BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008183
         (575 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359478768|ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/565 (68%), Positives = 460/565 (81%), Gaps = 17/565 (3%)

Query: 4   DLNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNH-IPSP 62
           +L         + +PR++HA+A+KS+  DRS YN+LIT YSKSNLLS ++R+F+H IPSP
Sbjct: 18  ELYTATTTSTPNCNPRLIHAQAIKSAITDRSFYNSLITLYSKSNLLSKAVRIFHHHIPSP 77

Query: 63  NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
           N+VSWTALISA++++  +L  F+SMLRHPTL   PNQRTLASL KTCASL  +  FGL L
Sbjct: 78  NVVSWTALISAYASTSFALLHFISMLRHPTL---PNQRTLASLLKTCASLP-SLSFGLQL 133

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           HSLSLKLSL  +PF  SALV+FYS+ R P  A +VFDEI ERD VC+ AMIVG AQN+R 
Sbjct: 134 HSLSLKLSLSAQPFVSSALVNFYSKCRLPLEACRVFDEITERDEVCFAAMIVGLAQNARP 193

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
           VD+L VF +M++ +VGSTMY VSGALRAA+ELAA+EQCR+IHGHAV +G D N+IVGT L
Sbjct: 194 VDALLVFGEMKACNVGSTMYSVSGALRAASELAALEQCRIIHGHAVSTGFDSNLIVGTAL 253

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           +DGYGKAG+V DARR+FDE L  LN +AWNAMMAGYAQQGDQ +V+ELF+ +E RG  PD
Sbjct: 254 VDGYGKAGLVLDARRIFDELLPSLNEVAWNAMMAGYAQQGDQRSVVELFNSMEARGLVPD 313

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           EYSFLA+LT+L NAGL GE+E W+ RMKV Y LEPGLEHYTCL+  MGRAG+LEDAERIA
Sbjct: 314 EYSFLAILTSLYNAGLVGEAEGWLTRMKVDYGLEPGLEHYTCLVGTMGRAGQLEDAERIA 373

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
           M MPFEPDAAVWRALLS  A+HG ADMA  MG+RL++++P DDSAYVIVANVL+  GRWD
Sbjct: 374 MTMPFEPDAAVWRALLSSCAMHGAADMAWAMGRRLMELDPQDDSAYVIVANVLATNGRWD 433

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
           EVAEVRK+MKDR V+KEGGRSWIEV+GKVHVFLAGDR HER+ +IY KL ELME+ E LG
Sbjct: 434 EVAEVRKMMKDRMVKKEGGRSWIEVRGKVHVFLAGDRRHERSHEIYAKLVELMEKIEELG 493

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVS-GAPRGKTLRIVKNLRICRDCHES 541
           Y            +  K+E LWYHSEKLA+AFG+VS  AP GK LRIVKNLRIC+DCHE+
Sbjct: 494 Y-----------KEGVKKETLWYHSEKLAVAFGVVSDAAPPGKALRIVKNLRICKDCHEA 542

Query: 542 FKYISRVVEREIVVRDVNRYHRFLN 566
           FKYIS VVEREI+VRDVNRYHRFLN
Sbjct: 543 FKYISCVVEREIIVRDVNRYHRFLN 567


>gi|449433225|ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
 gi|449487598|ref|XP_004157706.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/561 (63%), Positives = 448/561 (79%), Gaps = 5/561 (0%)

Query: 16  TDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           +DPRI HA+A+KS   +  +YNNLIT YSK+NLL YS RLFN IP P+IVSWTALISAHS
Sbjct: 27  SDPRIDHAQAIKSPATECVVYNNLITRYSKANLLHYSARLFNQIPFPDIVSWTALISAHS 86

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           ++ LSL  F+SMLR+PT    PN+RTLA LFKTCASL     FG +LHSL+ KLSL + P
Sbjct: 87  STFLSLRHFVSMLRYPTF---PNERTLAPLFKTCASLP-CVSFGFALHSLAYKLSLCNGP 142

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           + GSALV+FYS+ R  ++A KVFDEI  RD  CY A++VG AQN++ + +LS+F  M++S
Sbjct: 143 YSGSALVNFYSKCRLFNDACKVFDEISYRDEFCYSALVVGLAQNAQSIRALSMFRQMKAS 202

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           +V ST+Y VSGALRAAA+LAA+E+CRVIH HAVV+GLD NVIV T LIDGYGK+G++ DA
Sbjct: 203 EVASTIYSVSGALRAAADLAALERCRVIHSHAVVTGLDTNVIVQTALIDGYGKSGLIIDA 262

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R+VFDENL  +N + WNAM++ YAQQGDQ++ LE+F+ ++  G +PDEYSFLA+L++ CN
Sbjct: 263 RQVFDENLGCMNIVGWNAMLSSYAQQGDQNSTLEVFNSMKPFGMSPDEYSFLAILSSFCN 322

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           +GL  E + W+ RM V Y ++P LEH+TCLI A+GR G+LE+AER+AM MPF PD AVWR
Sbjct: 323 SGLVSEIKPWLRRMIVEYGVKPTLEHFTCLIDALGRTGKLEEAERVAMTMPFVPDEAVWR 382

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ALLS SA HG  DMA  M KRL+++N +DDSAYVIV+N LS   RW+EVA VRK+MK+R 
Sbjct: 383 ALLSSSASHGAGDMAWTMAKRLLELNQHDDSAYVIVSNALSVAARWEEVALVRKLMKERH 442

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           V+K  G+SWIEV+G+ HVFLAGDR HER E++  KL EL+ E E+LGYVPV  E LH VG
Sbjct: 443 VKKISGKSWIEVRGEAHVFLAGDRNHERAEEMNAKLKELVGEIEKLGYVPVCSETLHKVG 502

Query: 496 DREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
           ++E++EAL YHSEKLALA+G+++G AP GK LRI+KNLRICRDCH  FKY SRV+++EI+
Sbjct: 503 EKERKEALLYHSEKLALAYGILTGVAPPGKALRIIKNLRICRDCHLFFKYASRVLKKEII 562

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD+NRYHRF  GSCTC D+W
Sbjct: 563 VRDINRYHRFSYGSCTCADIW 583


>gi|356510837|ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/574 (61%), Positives = 446/574 (77%), Gaps = 19/574 (3%)

Query: 4   DLNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SP 62
           D N      + S DPR+ HARA+ S   DR+++NNLIT+YSKSNL SY++ LF+ +P  P
Sbjct: 5   DENDDEATMSMSMDPRVRHARAITSHAKDRAVWNNLITHYSKSNLSSYAVSLFHRLPFPP 64

Query: 63  NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
           N+VSWTALISAHSN+ LSL  FL+MLRH TL   PN RTLASLF TCA+L+ A  F LSL
Sbjct: 65  NVVSWTALISAHSNTLLSLRHFLAMLRHNTL---PNHRTLASLFATCAALT-AVSFALSL 120

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           HSL+LKL+L   PF  S+L+  Y++ R P NA+KVFDEI + D VC+ A++V  AQNSR 
Sbjct: 121 HSLALKLALAHHPFPASSLLSVYAKLRMPHNARKVFDEIPQPDNVCFSALVVALAQNSRS 180

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
           VD+LSVF+DMR     ST++ VSG LRAAA+LAA+EQCR++H HA+++GLD NV+VG+ +
Sbjct: 181 VDALSVFSDMRCRGFASTVHGVSGGLRAAAQLAALEQCRMMHAHAIIAGLDSNVVVGSAV 240

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           +DGYGKAG+V DARRVF+++L  +N   WNAMMAGYAQ GD  +  ELF  LE  G  PD
Sbjct: 241 VDGYGKAGVVDDARRVFEDSLDDMNIAGWNAMMAGYAQHGDYQSAFELFESLEGFGLVPD 300

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           EY+FLA+LTALCNAG+  E  +W  RM+V Y LEP LEHYTCL+ AM RAG LE AER+ 
Sbjct: 301 EYTFLAILTALCNAGMFLEIYRWFTRMRVDYGLEPSLEHYTCLVGAMARAGELERAERVV 360

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
           + MPFEPDAAVWRALLS  A  G+AD A  M KR++++ P+DD AYV VANVLS  GRWD
Sbjct: 361 LTMPFEPDAAVWRALLSVCAYRGEADKAWCMAKRVLELEPHDDYAYVSVANVLSSAGRWD 420

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
           +VAE+RK+MKDRRV+K+GGRSWIEV+G+VHVF+AGD  HER+++IY KLAELM + E+LG
Sbjct: 421 DVAELRKMMKDRRVKKKGGRSWIEVQGEVHVFVAGDWKHERSKEIYQKLAELMGDIEKLG 480

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDCHES 541
           Y              +++E+LWYHSEKLA+AFG++ G AP GK LRIVKNLRIC+DCHE+
Sbjct: 481 Y-------------EKRKESLWYHSEKLAVAFGVLCGSAPPGKPLRIVKNLRICKDCHEA 527

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           FKY++RV+EREI+VRDVNRYHRF+NG+CTC D+W
Sbjct: 528 FKYMTRVLEREIIVRDVNRYHRFVNGNCTCRDIW 561


>gi|356528186|ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/574 (62%), Positives = 442/574 (77%), Gaps = 19/574 (3%)

Query: 4   DLNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SP 62
           D N      + S DPR  HA+A+ S   DR+++NNLIT+YSKS+L SY++ LF  +P  P
Sbjct: 5   DENVNEAAMSMSMDPRARHAQAITSHIKDRAVWNNLITHYSKSDLSSYAVSLFQRLPFPP 64

Query: 63  NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
           N+VSWTALISAHSN+ LSL  FL+MLRH TL   PN RT+ASLF TCA+L+ A  F LSL
Sbjct: 65  NVVSWTALISAHSNTLLSLRHFLAMLRHNTL---PNHRTVASLFTTCAALT-AVSFALSL 120

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           HSL+LKLSL   PF  S+L+  Y++ R P NA+KVFDEI + D VC+ A+IV  AQNSR 
Sbjct: 121 HSLALKLSLSQHPFPASSLLSLYAKLRMPLNARKVFDEIPQPDNVCFSALIVALAQNSRS 180

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
           VD+ SVF++MR     ST++ VSG LRAAA+LAA+EQCR++H HAVV GLD NV+VG+ L
Sbjct: 181 VDASSVFSEMRGRGFASTVHSVSGVLRAAAQLAALEQCRMMHAHAVVLGLDSNVVVGSAL 240

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           +DGYGKAG+V+DARRVF++NL  +N + WNAMMAGYAQQGD  +  ELF  LE  G  PD
Sbjct: 241 VDGYGKAGVVNDARRVFEDNLDDMNVVGWNAMMAGYAQQGDYQSAFELFESLEGCGLVPD 300

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           EY+FLA+LTALCNAG+  E   W  RM+V Y LEP LEHYTCL+ AM RAG LE AER+ 
Sbjct: 301 EYTFLAILTALCNAGMFLEIAPWFTRMRVDYGLEPSLEHYTCLVGAMARAGELERAERVV 360

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
           + MP EPDAAVWRALLS  A  G+AD A  M KR++++ P DD AYV VANVLS  GRWD
Sbjct: 361 LTMPIEPDAAVWRALLSVCAYRGEADKAWSMAKRVLELEPNDDYAYVSVANVLSSAGRWD 420

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
           +VAE+RK+MKDRRV+K+GGRSWIEV+G+VHVF+AGD  HER+++IY KLAELM + E+LG
Sbjct: 421 DVAELRKMMKDRRVKKKGGRSWIEVQGEVHVFVAGDWKHERSKEIYQKLAELMGDIEKLG 480

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDCHES 541
           Y              +++EALWYHSEKLA+AFG++ G AP GK LRIVKNLRIC+DCHE+
Sbjct: 481 Y-------------EKRKEALWYHSEKLAVAFGVLCGPAPPGKPLRIVKNLRICKDCHEA 527

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           FKY++RV+EREI+VRDVNRYHRF+NG+CTC D+W
Sbjct: 528 FKYMTRVIEREIIVRDVNRYHRFVNGNCTCSDIW 561


>gi|357154677|ref|XP_003576863.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 574

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/564 (49%), Positives = 352/564 (62%), Gaps = 33/564 (5%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP-----SPNIVSWTALISAHS 75
           +HA  +K+S A R  YN L+  Y        S RL   +P     S    S  +L S  +
Sbjct: 35  LHAVLVKTSSASRDAYNLLLARYPPP----LSQRLLARLPFRARGSQLASSLASLTSPPA 90

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           ++P  L   L     P+L    +  +L  L     SL+       +  +LS        P
Sbjct: 91  SAPELLRRLLRASSPPSLLLADSPLSLL-LRSMPPSLAPHLHALAAKLALS------TSP 143

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
              S L+  YSR RSPD A+ +FDEI    RD VCY + IVG AQN+R   SLSVFA MR
Sbjct: 144 VSASCLITLYSRSRSPDAARHLFDEIPLAYRDTVCYTSTIVGLAQNARYEVSLSVFAAMR 203

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              + STMY +SGALRA A LAA+EQ R IH HAVV GLD NV VGT L+D YGKAG+V 
Sbjct: 204 YDALASTMYALSGALRATAGLAALEQTRGIHAHAVVVGLDGNVAVGTALVDAYGKAGVVH 263

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA +VFD+     N I WNA++A +AQQGD   V+ LFH +    F PD  +FLA+LTA 
Sbjct: 264 DAAKVFDDLAGDRNLITWNAILAAHAQQGDLEKVIALFHEMAGMHFVPDRLTFLALLTAC 323

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            NAG A ++E W+E M+++Y ++P L HYTC++ AM R GRLEDA+ I   MP +PDAAV
Sbjct: 324 SNAGAAADAEFWLEAMQLKYNVKPDLAHYTCVVGAMARVGRLEDADSIVCTMPCKPDAAV 383

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           WR LL+   +H KADMA  MG+RL++I+P DDSAYV++ANV S  GR D+VAE    M+D
Sbjct: 384 WRTLLAGCVVHHKADMAGVMGQRLLEIDPKDDSAYVMLANVYSAAGRSDDVAEAWTAMRD 443

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
             VRKEGGRSWIEV+G+VHVF+A D+ HE+  DIY KL EL++E E+LGY          
Sbjct: 444 HGVRKEGGRSWIEVRGQVHVFVANDKRHEQLLDIYEKLDELIKEVEKLGY---------- 493

Query: 494 VGDREKREALWYHSEKLALAFGLVSGA--PRGKTLRIVKNLRICRDCHESFKYISRVVER 551
              +E  E LW+HSE+LALA+GLVS    P GK LRIVKNLRIC  CHE FKY S V  R
Sbjct: 494 ---KEVDEGLWHHSERLALAYGLVSSGSVPSGKMLRIVKNLRICAHCHEFFKYASIVTGR 550

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
            IV+RDVNRYH    G C+C + W
Sbjct: 551 VIVIRDVNRYHTIKQGVCSCRNYW 574


>gi|226496697|ref|NP_001147836.1| vegetative storage protein [Zea mays]
 gi|195614038|gb|ACG28849.1| vegetative storage protein [Zea mays]
          Length = 563

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/457 (55%), Positives = 314/457 (68%), Gaps = 16/457 (3%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQN 179
           +H+L+ KL+L   P+  S L+  YSR RSP  A+ +FDEI    RD VCY + IVG AQN
Sbjct: 120 VHALAFKLALSSSPYSASCLITLYSRARSPACARHLFDEIPVANRDPVCYSSTIVGLAQN 179

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
               +SLSVFA MR++ V STM+ +SG+LRAAA LA +EQ   IH HAVV GLD NV VG
Sbjct: 180 GWYEESLSVFAGMRANGVDSTMHALSGSLRAAAGLAVLEQTCGIHAHAVVVGLDGNVAVG 239

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           T L+D YGKAG V DA +VF+      N I WNA+++ +AQQGD   V  LF+ +   GF
Sbjct: 240 TALVDAYGKAGDVDDAAKVFEGLGGDRNLITWNAVLSAHAQQGDVQEVTGLFNQMMELGF 299

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
           APD  +FLAVLT+  NAG A E++ W+E M+ +Y ++P LEHYTC++ AM R G LEDAE
Sbjct: 300 APDGLTFLAVLTSCSNAGAATEAKFWLEAMQSKYGVKPDLEHYTCVVGAMARVGHLEDAE 359

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419
             A  MP +PDAAVWR LL    +H + DMA  MG+RL++INP DDSAYV++ANV S  G
Sbjct: 360 SFACTMPCKPDAAVWRTLLMGCVVHRRVDMAESMGQRLLEINPKDDSAYVMLANVYSTAG 419

Query: 420 RWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE 479
           + DE AE    M+D  VRKEGGRSWIEV+G VHVF+A +R HE+  +IY KL EL++E E
Sbjct: 420 KTDEEAEAWTAMRDHGVRKEGGRSWIEVRGLVHVFVANERRHEQLLEIYDKLHELIQEVE 479

Query: 480 RLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDC 538
           +LGY             +E  E LW+HSE+LALA+GL+SG AP GK LRIVKNLRIC  C
Sbjct: 480 KLGY-------------KEADERLWHHSERLALAYGLISGAAPSGKVLRIVKNLRICAHC 526

Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           HE FKY S V++R IVVRDVNRYH    G C+C   W
Sbjct: 527 HEFFKYASMVIDRVIVVRDVNRYHTIKKGDCSCRGCW 563


>gi|414864741|tpg|DAA43298.1| TPA: vegetative storage protein [Zea mays]
          Length = 563

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 251/457 (54%), Positives = 314/457 (68%), Gaps = 16/457 (3%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQN 179
           +H+L+ KL+L   P+  S L+  YSR RSP  A+ +FDEI    RD VCY + IVG AQN
Sbjct: 120 VHALAFKLALSSSPYSASCLITLYSRARSPACARHLFDEIPVANRDSVCYSSTIVGLAQN 179

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
               +SLSVFA MR++ V STM+ +SG+LRAAA LA +EQ   IH HAVV GLD NV VG
Sbjct: 180 GWYEESLSVFAGMRANGVDSTMHALSGSLRAAAGLAVLEQTCGIHAHAVVVGLDGNVAVG 239

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           T L+D YGKAG V DA +VF+      N I WNA+++ +AQQGD   V  LF+ +   GF
Sbjct: 240 TALVDAYGKAGDVDDAAKVFEGLGGDRNLITWNAVLSAHAQQGDVQEVTGLFNQMMKLGF 299

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
           APD  +FLAVLT+  NAG A E++ W+E M+ +Y ++P LEHYTC++ AM R G LEDAE
Sbjct: 300 APDGLTFLAVLTSCSNAGAATEAKFWLEAMQSKYGVKPDLEHYTCVVGAMARVGHLEDAE 359

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419
             A  MP +PDAAVWR LL    +H + DMA  MG+RL++INP DDSAYV++ANV S  G
Sbjct: 360 SFACTMPCKPDAAVWRTLLMGCVVHRRVDMAESMGQRLLEINPKDDSAYVMLANVYSTAG 419

Query: 420 RWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE 479
           + +E AE    M+D  VRKEGGRSWIEV+G VHVF+A +R HE+  +IY KL EL++E E
Sbjct: 420 KTNEEAEAWTAMRDHGVRKEGGRSWIEVRGLVHVFVANERRHEQLLEIYDKLHELIQEVE 479

Query: 480 RLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDC 538
           +LGY             +E  E LW+HSE+LALA+GL+SG AP GK LRIVKNLRIC  C
Sbjct: 480 KLGY-------------KEADERLWHHSERLALAYGLISGAAPSGKVLRIVKNLRICAHC 526

Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           HE FKY S V++R IVVRDVNRYH    G C+C   W
Sbjct: 527 HEFFKYASMVIDRVIVVRDVNRYHTIKKGDCSCRGCW 563


>gi|413919886|gb|AFW59818.1| hypothetical protein ZEAMMB73_731783 [Zea mays]
          Length = 572

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/430 (56%), Positives = 298/430 (69%), Gaps = 16/430 (3%)

Query: 149 RSPDNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           RSP +A+ +FDEI    RD VCY + IVG AQN    +SLSVFA MR + V STMY +SG
Sbjct: 156 RSPASARHLFDEIPVANRDPVCYSSTIVGLAQNGWYEESLSVFAGMRVNAVDSTMYALSG 215

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           ALRAAA LA +EQ   IH HAVV GLD NV VGT L+D YGKAG V DA RVF    +  
Sbjct: 216 ALRAAAGLAVLEQTCGIHAHAVVVGLDGNVCVGTALVDAYGKAGGVDDAARVFKGLGADR 275

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N I WN +++ +AQQGD   V+ LF+ +   GFAPD  +FLAVLTA  NAG A E+E W+
Sbjct: 276 NLITWNTVLSAHAQQGDVQAVIGLFNQMMELGFAPDGLTFLAVLTACSNAGAATEAEFWL 335

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           E M+ +Y ++PGLEHYTC++ AM R GRLEDAE +A  MP +PDAAVWR LL    +H K
Sbjct: 336 ETMQSKYSVKPGLEHYTCVVGAMARMGRLEDAESVACTMPCKPDAAVWRTLLMGCVVHRK 395

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            D+A  MG+RL++INP DDSAYV++ANV S  G+ +E AE    M+D  VRKEGGRSWIE
Sbjct: 396 VDLAESMGQRLLEINPKDDSAYVLLANVYSAAGKKNEEAEAWTAMRDHGVRKEGGRSWIE 455

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           V+G VHVF+A +R HE+  +IY KL EL+ E E+LGY             +E  E   +H
Sbjct: 456 VRGLVHVFVANERRHEQLLEIYDKLTELILEVEKLGY-------------KETDEGFGHH 502

Query: 507 SEKLALAFGLVSG-APRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFL 565
           SE+LALA+GL+SG AP GK LRIVKNLRIC  CHE FKY S V++R IVVRDVNRYH   
Sbjct: 503 SERLALAYGLISGAAPSGKVLRIVKNLRICAHCHEFFKYASMVIDRVIVVRDVNRYHTIK 562

Query: 566 NGSCTCGDLW 575
            G C+C D W
Sbjct: 563 KGDCSCRDCW 572


>gi|242036981|ref|XP_002465885.1| hypothetical protein SORBIDRAFT_01g047580 [Sorghum bicolor]
 gi|241919739|gb|EER92883.1| hypothetical protein SORBIDRAFT_01g047580 [Sorghum bicolor]
          Length = 620

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 268/556 (48%), Positives = 347/556 (62%), Gaps = 43/556 (7%)

Query: 17  DPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRL-FNHIPSPNIVSWTALISAHS 75
           DP ++HA  +K++ + R+ YN L++ Y  S  L    RL F    +    S ++L ++  
Sbjct: 23  DPAVLHAVLVKTASSSRAAYNLLLSRYPPSLSLPLLSRLPFRPTAASLTSSLSSLSASSP 82

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            S L L   +  +    L+  P    L S+  + A L HA  F         KL+L   P
Sbjct: 83  ASALPLLRRVLGMSSALLADGPLSSLLRSMTPSLAPLVHALAF---------KLALSSSP 133

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
           +  S L+  YSR RSP +A+ +FDEI    RD VCY + IVG AQN +  +SLSVFA MR
Sbjct: 134 YSASCLITLYSRARSPASARHLFDEIPVANRDPVCYSSTIVGLAQNGQYEESLSVFAGMR 193

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           ++ V STMY +SGALRAAA LA +EQ   IH HA+V GLD NV VGT L+D YGKAG+V 
Sbjct: 194 ANAVDSTMYALSGALRAAAGLAVLEQTCGIHAHALVVGLDGNVAVGTALVDAYGKAGVVG 253

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA +VF+      N I WNA+++ +AQQGD   V+ LF+ +   GFAPD  +FLAVLTA 
Sbjct: 254 DAAKVFEGLGGDRNLITWNAVLSAHAQQGDVQAVIGLFNQMMELGFAPDGLTFLAVLTAC 313

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            NAG A E+E W+E M+ +Y ++PGLEHYTC++ AM R GRL DAE +A  MP +PDAAV
Sbjct: 314 SNAGAATEAEFWLEAMQSKYSVKPGLEHYTCVVGAMARVGRLVDAESVACTMPCKPDAAV 373

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           WR LL    +H K                 DDS YV++ANV S  G+ +E AE    M+D
Sbjct: 374 WRTLLMGCVVHRK-----------------DDSTYVMLANVYSAAGKKNEEAEAWTAMRD 416

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R VRKEGGRSWIEV+G+VHVF+A +R HE+  +IY KL EL+++ E+LGY          
Sbjct: 417 RGVRKEGGRSWIEVRGRVHVFVANERRHEQLLEIYDKLNELVQKVEKLGY---------- 466

Query: 494 VGDREKREALWYHSEKLALAFGLVSG-APRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
              +E  E  W+HSE+LALA+GL+SG AP GK LRIVKNLRIC  CHE FKY S V++R 
Sbjct: 467 ---KEADEGFWHHSERLALAYGLISGAAPSGKVLRIVKNLRICAHCHEFFKYASMVIDRV 523

Query: 553 IVVRDVNRYHRFLNGS 568
           IVVRDVNRYH    G+
Sbjct: 524 IVVRDVNRYHTIKKGT 539


>gi|255574899|ref|XP_002528356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532224|gb|EEF34028.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 356

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/332 (66%), Positives = 269/332 (81%), Gaps = 7/332 (2%)

Query: 10  QPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKS-NLL--SYSLRLFNHIPSPNIVS 66
           Q  +T+ DPRI+HA+A+KS   + S +N+LIT YS+S N L  SY+ RLF+ +PSPNIVS
Sbjct: 3   QLLHTNADPRILHAQAIKSPYTNLSCFNHLITLYSRSPNFLVFSYANRLFSLLPSPNIVS 62

Query: 67  WTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLS 126
           WT+LISAH++S LSL+ FLSMLR P    LPNQRTLASLFK C +LS A  FG SLHS++
Sbjct: 63  WTSLISAHTHSFLSLHHFLSMLRRP---ILPNQRTLASLFKACTNLS-ALSFGFSLHSMA 118

Query: 127 LKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186
           LKLSL  +PF GSALV+FYS+ R P+NA+KVFDE+ ERD VCYGA+IVG AQNSR +D+L
Sbjct: 119 LKLSLDTQPFSGSALVNFYSKCRLPENARKVFDEMPERDEVCYGALIVGLAQNSRAIDAL 178

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
           SVF +M+  +V ST+Y VSGALRAAA +AA+EQCRVIHGHAVVSGLDRNVI+G+ LIDGY
Sbjct: 179 SVFNEMKFCNVSSTVYSVSGALRAAAAMAALEQCRVIHGHAVVSGLDRNVIIGSSLIDGY 238

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
           GKAG++ DAR VFDE L  LN +AWNAMMA YAQQGD+++VLELF+ +   G  PDEYSF
Sbjct: 239 GKAGVIMDARMVFDELLPGLNMVAWNAMMAVYAQQGDKNSVLELFNAMRGEGLLPDEYSF 298

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           LA+LTA CNAGL  ESEKW++ MKV Y +EPG
Sbjct: 299 LAILTAFCNAGLYLESEKWLKSMKVEYGVEPG 330


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/561 (36%), Positives = 341/561 (60%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN- 76
           R +H+  +K   ++D  +   L+  YSK +LL  +   FN +P  ++++W A+IS +S  
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 77  --SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                +L++F+ M +   + F  NQ TL+++ K+ A L    +    +H LS+K   H  
Sbjct: 412 WEDMEALSLFVEMHKE-GIGF--NQTTLSTILKSTAGLQVVHVCR-QVHGLSVKSGFHSD 467

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +  ++L+  Y +    ++A+++F+E    D+V + +MI  +AQ  +  ++L +F +M+ 
Sbjct: 468 IYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQD 527

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            ++    +  S  L A A L+A EQ + +H H +  G   ++  G  L++ Y K G + D
Sbjct: 528 MELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDD 587

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A R F E L+    ++W+AM+ G AQ G     L+LF+ +   G +P+  + ++VL A  
Sbjct: 588 AGRAFSE-LTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN 646

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E++ + E M+  +  +P  EHY C+I  +GRAG++ +A  +   MPFE +A+VW
Sbjct: 647 HAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVW 706

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL  + IH   ++  +  + L  + P     +V++AN+ +  G+W+ VAEVR++M+D 
Sbjct: 707 GALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDS 766

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           +V+KE G SWIEVK KV+ FL GDR H R+++IY KL EL +  ++ GYVP+ +  LH+V
Sbjct: 767 KVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDV 826

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK   L++HSEKLA+AFGL++  P+G  +R+ KNLR+C DCH +FKYI ++V REI+
Sbjct: 827 EQSEKELLLYHHSEKLAVAFGLIA-TPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREII 885

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD+NR+H F +GSC+CGD W
Sbjct: 886 VRDINRFHHFKDGSCSCGDYW 906



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 161/360 (44%), Gaps = 32/360 (8%)

Query: 21  VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   KS  +D  SI N+LI  YSK     Y+ +L +    P++VSW+ALIS ++ + L
Sbjct: 78  IHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGL 137

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                ++      L    N+ T +S+ K C S+      G  +H + +        F  +
Sbjct: 138 GGGALMAFHEMHLLGVKCNEFTFSSVLKAC-SIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            LV  Y++     ++K++FDEI ER+VV + A+   + Q     +++ +F +M  S +  
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKP 256

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             + +S  + A   L    + ++IHG+ +  G D +      L+D Y K G ++DA  VF
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVF 316

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +   + ++WNA++AG          LEL                             
Sbjct: 317 -EKIKQPDIVSWNAVIAGCVLHEHHEQALELL---------------------------- 347

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           G+ ++ +    ++  +E  L     L+    +   LEDA R+A  +  E D   W A++S
Sbjct: 348 GQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDA-RMAFNLLPEKDLIAWNAIIS 406



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 154/337 (45%), Gaps = 16/337 (4%)

Query: 60  PSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119
           P+P ++      S    +   LN+          +F P   + + L   C + + +   G
Sbjct: 23  PAPKLIQTVPQFSEDPQTTAILNLI------DKGNFTPTSVSYSKLLSQCCT-TKSLRPG 75

Query: 120 LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
           L +H+   K  L D P   + L++ YS+ R    A+K+ DE  E D+V + A+I G+AQN
Sbjct: 76  LQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQN 135

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
                +L  F +M    V    +  S  L+A + +  +   + +HG  VVSG + +V V 
Sbjct: 136 GLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVA 195

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
             L+  Y K     D++R+FDE +   N ++WNA+ + Y Q       + LF+ + + G 
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDE-IPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGI 254

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIER---MKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            P+E+S  +++ A    GL   S   I     +K+ Y  +P       L+    + G L 
Sbjct: 255 KPNEFSLSSMVNAC--TGLRDSSRGKIIHGYLIKLGYDWDPF--SANALVDMYAKVGDLA 310

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           DA  +   +  +PD   W A+++   +H   + A ++
Sbjct: 311 DAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALEL 346



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 170/384 (44%), Gaps = 47/384 (12%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           + D  + N L+  Y+K +    S RLF+ IP  N+VSW AL S +        ++ +F  
Sbjct: 189 EGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYE 248

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M+        PN+ +L+S+   C  L  +   G  +H   +KL     PF  +ALV  Y+
Sbjct: 249 MVLS---GIKPNEFSLSSMVNACTGLRDSSR-GKIIHGYLIKLGYDWDPFSANALVDMYA 304

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +     +A  VF++I++ D+V + A+I G   +     +L +   M+             
Sbjct: 305 KVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK------------- 351

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
                         R +H   +   ++ ++ V  GL+D Y K  ++ DAR  F+  L   
Sbjct: 352 --------------RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNL-LPEK 396

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL-AGESEKW 325
           + IAWNA+++GY+Q  +    L LF  +   G   ++ +   +L +   AGL      + 
Sbjct: 397 DLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKS--TAGLQVVHVCRQ 454

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP----DAAVWRALLSFS 381
           +  + V+      +     LI + G+   +EDAERI     FE     D   + ++++  
Sbjct: 455 VHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERI-----FEECTIGDLVSFTSMITAY 509

Query: 382 AIHGKADMASKMGKRLIDINPYDD 405
           A +G+ + A K+   + D+    D
Sbjct: 510 AQYGQGEEALKLFLEMQDMELKPD 533


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/563 (35%), Positives = 325/563 (57%), Gaps = 9/563 (1%)

Query: 16  TDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
            + + +H + +KS    D  ++N+L+  Y+K    +Y+ ++F  IP  ++VSWTALI+  
Sbjct: 208 NEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGF 267

Query: 75  SNSPLS--LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
                   L IF  ML      F PN  T  S+ ++C+SLS   L G  +H+  +K SL 
Sbjct: 268 VAEGYGSGLRIFNQMLAE---GFNPNMYTFISILRSCSSLSDVDL-GKQVHAQIVKNSLD 323

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F G+ALV  Y++ R  ++A+ +F+ + +RD+  +  ++ G+AQ+ +   ++  F  M
Sbjct: 324 GNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQM 383

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           +   V    + ++ +L   + +A ++  R +H  A+ +G   ++ V + L+D Y K G V
Sbjct: 384 QREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCV 443

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DA  VFD  L   ++++WN ++ GY+Q G     L+ F  +   G  PDE +F+ VL+A
Sbjct: 444 EDAEVVFD-GLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSA 502

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL  E +K    +   Y + P +EHY C++  +GRAG+  + E     M    +  
Sbjct: 503 CSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVL 562

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W  +L    +HG  +   +   +L ++ P  DS Y++++N+ +  G WD+V  VR +M 
Sbjct: 563 IWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMS 622

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            R V+KE G SW+EV G+VHVFL+ D  H +  +I+ KL +L ++   +GY P  D +LH
Sbjct: 623 TRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLH 682

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           NV DREK+E L+YHSE+LALAF L+S + R KT+RI KNLRIC DCH+  K IS +  +E
Sbjct: 683 NVSDREKQELLFYHSERLALAFALLSTSTR-KTIRIFKNLRICGDCHDFMKSISEITNQE 741

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           +VVRD+N +H F NGSC+C + W
Sbjct: 742 LVVRDINCFHHFKNGSCSCQNFW 764



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 159/364 (43%), Gaps = 11/364 (3%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLN---IFLSML 88
           D  ++++L+  Y K   L  + ++   +P  ++  W   +S+ +NSP  L        ++
Sbjct: 23  DSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSS-ANSPYPLQEAVQLFYLM 81

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           RH  +    NQ   ASL    ASL     +G S+H+   K          +A V  Y + 
Sbjct: 82  RHTRIRL--NQFIFASLISAAASLGDNH-YGESIHACVCKYGFESDILISNAFVTMYMKT 138

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           +S +N  + F  +   ++     ++ GF           +   +        MY     L
Sbjct: 139 QSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISIL 198

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +  A    + + + IHG  + SG++ +  +   L++ Y K G  + A +VF E +   + 
Sbjct: 199 KTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGE-IPERDV 257

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++W A++ G+  +G  S  L +F+ +   GF P+ Y+F+++L + C++    +  K +  
Sbjct: 258 VSWTALITGFVAEGYGSG-LRIFNQMLAEGFNPNMYTFISILRS-CSSLSDVDLGKQVHA 315

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
             V+  L+      T L+    +   LEDAE I   +  + D   W  +++  A  G+ +
Sbjct: 316 QIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAGYAQDGQGE 374

Query: 389 MASK 392
            A K
Sbjct: 375 KAVK 378


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/561 (36%), Positives = 341/561 (60%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN- 76
           R +H+  +K   ++D  +   L+  YSK +LL  +   FN +P  ++++W A+IS +S  
Sbjct: 379 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 438

Query: 77  --SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                +L++F+ M +   + F  NQ TL+++ K+ A L    +    +H LS+K   H  
Sbjct: 439 WEDMEALSLFVEMHKE-GIGF--NQTTLSTILKSTAGLQVVHVC-RQVHGLSVKSGFHSD 494

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +  ++L+  Y +    ++A+++F+E    D+V + +MI  +AQ  +  ++L +F +M+ 
Sbjct: 495 IYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQD 554

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            ++    +  S  L A A L+A EQ + +H H +  G   ++  G  L++ Y K G + D
Sbjct: 555 MELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDD 614

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A R F E L+    ++W+AM+ G AQ G     L+LF+ +   G +P+  + ++VL A  
Sbjct: 615 AGRAFSE-LTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN 673

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E++ + E M+  +  +P  EHY C+I  +GRAG++ +A  +   MPFE +A+VW
Sbjct: 674 HAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVW 733

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL  + IH   ++  +  + L  + P     +V++AN+ +  G+W+ VAEVR++M+D 
Sbjct: 734 GALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDS 793

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           +V+KE G SWIEVK KV+ FL GDR H R+++IY KL EL +  ++ GYVP+ +  LH+V
Sbjct: 794 KVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDV 853

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK   L++HSEKLA+AFGL++  P+G  +R+ KNLR+C DCH +FKYI ++V REI+
Sbjct: 854 EQSEKELLLYHHSEKLAVAFGLIA-TPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREII 912

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD+NR+H F +GSC+CGD W
Sbjct: 913 VRDINRFHHFKDGSCSCGDYW 933



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 190/388 (48%), Gaps = 11/388 (2%)

Query: 15  STDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           S+  +I+H   +K     D    N L+  Y+K   L+ ++ +F  I  P+IVSW A+I+ 
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAG 333

Query: 74  ---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
              H +   +L +   M R       PN  TL+S  K CA +    L G  LHS  +K+ 
Sbjct: 334 CVLHEHHEQALELLGQMKRS---GICPNIFTLSSALKACAGMGLKEL-GRQLHSSLMKMD 389

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           +    F    LV  YS+    ++A+  F+ + E+D++ + A+I G++Q    +++LS+F 
Sbjct: 390 MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFV 449

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           +M    +G     +S  L++ A L  +  CR +HG +V SG   ++ V   LID YGK  
Sbjct: 450 EMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCS 509

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V DA R+F+E  ++ + +++ +M+  YAQ G     L+LF  ++     PD +   ++L
Sbjct: 510 HVEDAERIFEE-CTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLL 568

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  N   A E  K +    ++Y     +     L++   + G ++DA R A +   E  
Sbjct: 569 NACANLS-AFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGR-AFSELTERG 626

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLI 398
              W A++   A HG    A ++  +++
Sbjct: 627 IVSWSAMIGGLAQHGHGRQALQLFNQML 654



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 171/360 (47%), Gaps = 5/360 (1%)

Query: 21  VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   KS  +D  SI N+LI  YSK     Y+ +L +    P++VSW+ALIS ++ + L
Sbjct: 78  IHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGL 137

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                ++      L    N+ T +S+ K C S+      G  +H + +        F  +
Sbjct: 138 GGGALMAFHEMHLLGVKCNEFTFSSVLKAC-SIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            LV  Y++     ++K++FDEI ER+VV + A+   + Q     +++ +F +M  S +  
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKP 256

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             + +S  + A   L    + ++IHG+ +  G D +      L+D Y K G ++DA  VF
Sbjct: 257 NEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVF 316

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +   + ++WNA++AG          LEL   ++  G  P+ ++  + L A    GL 
Sbjct: 317 -EKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLK 375

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E  + +    ++  +E  L     L+    +   LEDA R+A  +  E D   W A++S
Sbjct: 376 -ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDA-RMAFNLLPEKDLIAWNAIIS 433



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 155/337 (45%), Gaps = 16/337 (4%)

Query: 60  PSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119
           P+P ++      S    +   LN+          +F P   + + L   C + + +   G
Sbjct: 23  PAPKLIQTVPQFSQDPQTTAILNLI------DKGNFTPTSVSYSKLLSQCCT-TKSLRPG 75

Query: 120 LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
           L +H+   K  L D P   + L++ YS+ R+   A+K+ DE  E D+V + A+I G+AQN
Sbjct: 76  LQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQN 135

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
                +L  F +M    V    +  S  L+A + +  +   + +HG  VVSG + +V V 
Sbjct: 136 GLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVA 195

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
             L+  Y K     D++R+FDE +   N ++WNA+ + Y Q       + LF+ + + G 
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDE-IPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGI 254

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIER---MKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            P+E+S  +++ A    GL   S   I     +K+ Y  +P       L+    + G L 
Sbjct: 255 KPNEFSLSSMVNAC--TGLRDSSRGKIIHGYLIKLGYDWDPF--SANALVDMYAKVGDLA 310

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           DA  +   +  +PD   W A+++   +H   + A ++
Sbjct: 311 DAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALEL 346


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/560 (36%), Positives = 331/560 (59%), Gaps = 8/560 (1%)

Query: 19  RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H+  +K  + +D      L+  YSK  ++  + R ++ +P  +I++W ALIS +S  
Sbjct: 304 RQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQC 363

Query: 78  PLSLNI--FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              L+     S +    + F  NQ TL+++ K+ ASL  A      +H++S+K  ++   
Sbjct: 364 GDHLDAVSLFSKMFSEDIDF--NQTTLSTVLKSVASL-QAIKVCKQIHTISIKSGIYSDF 420

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           +  ++L+  Y +    D A K+F+E    D+V Y +MI  ++Q     ++L ++  M+ +
Sbjct: 421 YVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDA 480

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           D+    +  S  L A A L+A EQ + +H HA+  G   ++     L++ Y K G + DA
Sbjct: 481 DIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDA 540

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            R F E +     ++W+AM+ GYAQ G     L LF+ +   G  P+  + ++VL A  +
Sbjct: 541 DRAFSE-IPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNH 599

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  E +++ E+M+V + ++P  EHY C+I  +GR+G+L +A  +  ++PFE D  VW 
Sbjct: 600 AGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWG 659

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ALL  + IH   ++  K  K L D+ P     +V++AN+ +  G W+ VA+VRK MKD +
Sbjct: 660 ALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSK 719

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           V+KE G SWIE+K KV+ F+ GDR H R+++IY KL +L +   + GY  + +  +HNV 
Sbjct: 720 VKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVD 779

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
             EK + L++HSEKLA+AFGL++  P G  +R+ KNLRIC DCH  FK++ ++V REI+V
Sbjct: 780 KSEKEKLLYHHSEKLAVAFGLIA-TPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIV 838

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD+NR+H F +GSC+CGD W
Sbjct: 839 RDINRFHHFKDGSCSCGDYW 858



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 193/384 (50%), Gaps = 11/384 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           R +H   LK     D+   N L+  YSK+  +  ++ +F  I  P++VSW A+I+    H
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLH 262

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             + L+L +   M    T    PN  TL+S  K CA++    L G  LHS  +K+  H  
Sbjct: 263 DCNDLALMLLDEMKGSGTR---PNMFTLSSALKACAAMGFKEL-GRQLHSSLIKMDAHSD 318

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F    LV  YS+    D+A++ +D + ++D++ + A+I G++Q    +D++S+F+ M S
Sbjct: 319 LFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFS 378

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            D+      +S  L++ A L A++ C+ IH  ++ SG+  +  V   L+D YGK   + +
Sbjct: 379 EDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDE 438

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A ++F+E  +  + +A+ +M+  Y+Q GD    L+L+  ++     PD +   ++L A  
Sbjct: 439 ASKIFEER-TWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACA 497

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           N   A E  K +    +++     +     L++   + G +EDA+R    +P       W
Sbjct: 498 NLS-AYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP-NRGIVSW 555

Query: 375 RALLSFSAIHGKADMASKMGKRLI 398
            A++   A HG    A ++  +++
Sbjct: 556 SAMIGGYAQHGHGKEALRLFNQML 579



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 174/386 (45%), Gaps = 9/386 (2%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA  +K   + D S+ N+L+T YSK     Y+ +L +     ++VSW++L+S +  +  
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                L       L    N+ T  S+ K C S+      G  +H +++        F  +
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKAC-SMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            LV  Y++    D+++++F  I ER+VV + A+   + Q+    +++ +F +M  S +  
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             + +S  L A A L   +  R IHG  +  GLD +      L+D Y KAG +  A  VF
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            ++++  + ++WNA++AG          L L   ++  G  P+ ++  + L A    G  
Sbjct: 242 -QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E  + +    ++      L     L+    +   ++DA R   +MP + D   W AL+S
Sbjct: 301 -ELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALIS 358

Query: 380 FSAIHGK----ADMASKMGKRLIDIN 401
             +  G       + SKM    ID N
Sbjct: 359 GYSQCGDHLDAVSLFSKMFSEDIDFN 384



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 128/271 (47%), Gaps = 3/271 (1%)

Query: 120 LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
           + LH+  +K      P   + LV  YS+ R    A+K+ DE  E DVV + +++ G+ QN
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
             + ++L VF +M    V    +     L+A +    +   R +HG AVV+G + +  V 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
             L+  Y K G++ D+RR+F   +   N ++WNA+ + Y Q       + LF  +   G 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFG-GIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
            P+E+S   +L A C     G+  + I  + ++  L+        L+    +AG +E A 
Sbjct: 180 MPNEFSISIILNA-CAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAV 238

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            +   +   PD   W A+++   +H   D+A
Sbjct: 239 AVFQDIA-HPDVVSWNAIIAGCVLHDCNDLA 268


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/559 (38%), Positives = 334/559 (59%), Gaps = 10/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   LK+  + D  +   L+  Y+K    +  LR+F  +P  +++ W+ +IS ++ S  
Sbjct: 164 VHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQ 223

Query: 80  S---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           S   + +F  M R   L   PNQ T AS+ ++CAS+ +  L G  +H   LK+ L    F
Sbjct: 224 SREAVELFGQMRRAFVL---PNQFTFASVLQSCASIENLQL-GKQVHCHVLKVGLDGNVF 279

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +AL+  Y++    DN+ K+F E+  R+ V +  MIVG+ Q+     +LS++ +M    
Sbjct: 280 VSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQ 339

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V ++    S  LRA A LAAME    IH  ++ +  D++V+VG  LID Y K G + +AR
Sbjct: 340 VQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNAR 399

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFD  LS  + I+WNAM++GY+  G     L+ F +++     P++ +F+++L+A  NA
Sbjct: 400 LVFDM-LSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNA 458

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL    + + + M   Y +EP +EHYTC++  +GR+G L+ A ++   +P EP+  VWRA
Sbjct: 459 GLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRA 518

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    IH   D+     ++++ I+P D++ +V+++N+ +   RW+ VA VRK MK++ V
Sbjct: 519 LLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGV 578

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE G SWIE +G VH F  GD  H   + I   L  L  + E+ GYVP  + +L +V D
Sbjct: 579 KKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVED 638

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK+  LW HSE+LALAFGL+    RG  +RI+KNLRIC DCH + K IS++V+R+I++R
Sbjct: 639 DEKKRHLWVHSERLALAFGLIRTPSRGH-IRILKNLRICTDCHSAIKLISKIVQRDIIIR 697

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D+NR+H F +G C+CGD W
Sbjct: 698 DMNRFHHFQDGICSCGDYW 716



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 162/342 (47%), Gaps = 6/342 (1%)

Query: 59  IPSPNIVSWTALISAHSNSPLSLNIFLSML-RHPTLSFLPNQRTLASLFKTCASLSHAFL 117
           +P  N VS+  LI  +  S   L+  + +  R        N     ++ K   S+  A L
Sbjct: 1   MPDRNTVSFVTLIQGYVQS-FQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAEL 59

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
              SLH+   KL      F G+AL+  Y+   S ++A++ FD I  +D+V +  M+  +A
Sbjct: 60  -AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYA 118

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           +N R  DSL +FA+MR        +  +G L+A   L A    + +HG  + +  + ++ 
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           VG GL+D Y K G  +D  RVF+E +   + I W+ M++ YAQ       +ELF  +   
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEE-MPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA 237

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
              P++++F +VL + C +    +  K +    ++  L+  +     L+    + GRL++
Sbjct: 238 FVLPNQFTFASVLQS-CASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDN 296

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           + ++ M +P   +   W  ++      G  D A  + K +++
Sbjct: 297 SMKLFMELP-NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLE 337


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/563 (37%), Positives = 334/563 (59%), Gaps = 13/563 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH  A+KS   +D S+ N+L+  YSK     ++  +FN +   +++SW ++IS+ + S L
Sbjct: 308 VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSL 367

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF----GLSLHSLSLKLSLH 132
              S+N+F+ +L H  L   P+  TLAS+    A+ +   L     G  +H+ ++K    
Sbjct: 368 EEESVNLFIDLL-HEGLK--PDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFD 424

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                 S ++  Y +     NA  VF+ I   D V + +MI G   N     +L ++  M
Sbjct: 425 SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM 484

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R S V    Y  +  ++A++ + A+EQ R +H + +      +  VGT L+D Y K G +
Sbjct: 485 RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNI 544

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DA R+F + ++V N   WNAM+ G AQ G+    + LF  ++  G  PD  SF+ +L+A
Sbjct: 545 EDAYRLF-KKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSA 603

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  E+ +++  M   Y +EP +EHY+CL+ A+GRAG +++A+++   MPF+  A+
Sbjct: 604 CSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 663

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           + RALL    I G  +   ++  RL  + P+D +AYV+++N+ +   RWD+V + RK+MK
Sbjct: 664 INRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMK 723

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            + V+K+ G SWI+VK  +H+F+  DR H + + IY K+ E+M+     GYVP  + +L 
Sbjct: 724 RKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLL 783

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V D EK  +L+YHSEKLA+A+GL+S  P   T+R++KNLR+C DCH + KYIS+V ERE
Sbjct: 784 DVEDEEKERSLYYHSEKLAIAYGLIS-TPASTTIRVIKNLRVCGDCHNAIKYISKVFERE 842

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IV+RD NR+H F +G C+CGD W
Sbjct: 843 IVLRDANRFHHFRDGVCSCGDYW 865



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 189/396 (47%), Gaps = 25/396 (6%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           +  HAR + S  A D  + NNL+T YSK   LS + ++F+  P  ++V+W A++ A++  
Sbjct: 97  KCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAAS 156

Query: 76  ------NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
                 N+   L++F  +LR    S    + TLA + K C + S        +H  ++K+
Sbjct: 157 VDSNDGNAQEGLHLF-RLLRASLGS--TTRMTLAPVLKLCLN-SGCLWAAEGVHGYAIKI 212

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
            L    F   ALV+ YS+     +A+ +FD +RERDVV +  M+ G+ Q     ++  +F
Sbjct: 213 GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 272

Query: 190 ADMRSS----DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           ++   S    D  S    ++G L A  +   +E  + +HG AV SGLD +V V   L++ 
Sbjct: 273 SEFHRSGLRPDEFSVQLILNGCLWAGTD--DLELGKQVHGIAVKSGLDSDVSVANSLVNM 330

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K G    AR VF++ +  L+ I+WN+M++  AQ   +   + LF  L   G  PD ++
Sbjct: 331 YSKMGCAYFAREVFND-MKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFT 389

Query: 306 F----LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
                LA     C   +  +  K I    ++   +  L   + ++    + G + +A  I
Sbjct: 390 LASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAG-I 448

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
                  PD   W +++S    +G  D A ++  R+
Sbjct: 449 VFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM 484



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 127/284 (44%), Gaps = 9/284 (3%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           L +T  S +H  L G   H+  +        F  + L+  YS+  S  +A++VFD   ER
Sbjct: 83  LLRTAIS-THNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPER 141

Query: 165 DVVCYGAMIVGFA-----QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
           D+V + A++  +A      +    + L +F  +R+S   +T   ++  L+       +  
Sbjct: 142 DLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 201

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
              +HG+A+  GL+ +V V   L++ Y K G + DAR +FD  +   + + WN M+ GY 
Sbjct: 202 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDW-MRERDVVLWNMMLKGYV 260

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPG 338
           Q G +    +LF      G  PDE+S   +L     AG    E  K +  + V+  L+  
Sbjct: 261 QLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSD 320

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
           +     L++   + G    A  +   M    D   W +++S  A
Sbjct: 321 VSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNSMISSCA 363


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/564 (37%), Positives = 334/564 (59%), Gaps = 13/564 (2%)

Query: 17  DPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           D R +HA  L  SQ   S++  N+LI  Y K   ++ + R+F+ +P+ ++ SWT+LI+ +
Sbjct: 82  DARAIHAH-LAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGY 140

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + + +   +L +   MLR     F PN  T ASL K  A  S +   G  +H+L++K   
Sbjct: 141 AQNDMPDEALGLLPGMLRG---RFKPNGFTFASLLKA-AGASASSGIGEQIHALTVKYDW 196

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           HD  + GSAL+  Y+R    D A  VFD++  ++ V + A+I GFA+      +L +FA+
Sbjct: 197 HDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAE 256

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+ +   +T +  S    A A + A+EQ + +H H + SG   +  VG  ++D Y K+G 
Sbjct: 257 MQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGS 316

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DAR+VFD  +   + + WN+M+  +AQ G     +  F  +   G   ++ +FL++LT
Sbjct: 317 MIDARKVFDR-VDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILT 375

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  E +++ + MK  Y LEP ++HY  ++  +GRAG L DA      MP +P A
Sbjct: 376 ACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTA 434

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           AVW ALL    +H  A +       + +++P D    V++ N+ +  G+WD  A VRK+M
Sbjct: 435 AVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMM 494

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           K   V+KE   SW+E++  VH+F+A D  H R+E+IY K  E+  +  + GYVP  D +L
Sbjct: 495 KATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVL 554

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            +V ++E++  L YHSEK+ALAF L++  P G T+RI+KN+RIC DCH +F+YIS+V +R
Sbjct: 555 LHVDEQERQAKLQYHSEKIALAFALIN-MPLGATIRIMKNIRICGDCHSAFRYISKVFKR 613

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EIVVRD NR+H F +GSC+CGD W
Sbjct: 614 EIVVRDTNRFHHFSSGSCSCGDYW 637



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 12/221 (5%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           + A A   +++  R IH H   S    +V +   LI  Y K G V+DARRVFD  +   +
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFD-GMPARD 129

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
             +W +++AGYAQ       L L   +    F P+ ++F ++L A   +  +G  E+ I 
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ-IH 188

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV-WRALLSFSAIHGK 386
            + V+Y     +   + L+    R GR++ A  IA+    E    V W AL++  A  G 
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMA--IAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 387 AD----MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            +    M ++M +   +   +    Y  V + ++G+G  ++
Sbjct: 247 GETTLLMFAEMQRNGFEATHF---TYSSVFSAIAGIGALEQ 284


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/556 (37%), Positives = 325/556 (58%), Gaps = 4/556 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH  ALK     D  +   L+  Y+KS  +  + RLF  +P  +++ W+ +I+ ++ S  
Sbjct: 259 VHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDR 318

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           S       LR    S +PN  T AS+ + CAS S +   G  +HS  LK  L+   F  +
Sbjct: 319 SKEALDLFLRMRQTSVVPNNFTFASVLQACAS-SVSLDLGKQIHSCVLKFGLNSNVFVSN 377

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           A++  Y++    +N+ K+F+E+ +R+ V +  +IVG+ Q      ++++F  M   D+  
Sbjct: 378 AIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQP 437

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T    S  LRA+A LAA+E    IH   + +  +++ +V   LID Y K G ++DAR  F
Sbjct: 438 TEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTF 497

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D+ ++  + ++WNAM+ GY+  G     L LF +++     P++ +F+ VL+A  NAGL 
Sbjct: 498 DK-MNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLL 556

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            + +   E M   Y ++P +EHYTC++  +GR GR ++A ++   + ++P   VWRALL 
Sbjct: 557 YKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLG 616

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IH K D+     + ++++ P+DD+ +V+++N+ +  GRWD VA VRK M+ ++VRKE
Sbjct: 617 ACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKE 676

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SW+E +G VH F  GD  H   + I   L  L ++    GYVP  + +L +V D EK
Sbjct: 677 PGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEK 736

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              LW HSE+LALA+GL+   P   ++RI+KNLRIC DCH   K IS+VV+REIV+RD+N
Sbjct: 737 ERHLWVHSERLALAYGLIR-TPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDIN 795

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 796 RFHHFRHGVCSCGDYW 811



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 180/385 (46%), Gaps = 7/385 (1%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LK  +  D    N L+  Y +SN L  + +LF+ +P  N +S+  L   +S    
Sbjct: 57  LHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQ 116

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                  +LR        N     +L K   S+  A L   +LH+   KL  H   F G+
Sbjct: 117 FHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHL-CWTLHACVYKLGHHADAFVGT 175

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  YS   + D A+ VFD+I  +D+V +  M+  +A+N    +SL +F  MR      
Sbjct: 176 ALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKP 235

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             + +SGAL++   L A    + +HG A+    D ++ VG  L++ Y K+G + DA+R+F
Sbjct: 236 NNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLF 295

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +E +   + I W+ M+A YAQ       L+LF  +      P+ ++F +VL A C + ++
Sbjct: 296 EE-MPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQA-CASSVS 353

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +  K I    +++ L   +     ++    + G +E++ ++   +P   D   W  ++ 
Sbjct: 354 LDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVT-WNTIIV 412

Query: 380 FSAIHGKADMASKMGKRLI--DINP 402
                G  + A  +   ++  D+ P
Sbjct: 413 GYVQLGDGERAMNLFTHMLEHDMQP 437



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 3/261 (1%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  LH   LK       F  + L++FY +  S  +A K+FDE+ + + + +  +  G+++
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           + +   +L     +         +  +  L+    +     C  +H      G   +  V
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           GT LID Y   G V  AR VFD+ +   + ++W  M+A YA+       L+LF+ + + G
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDD-ICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
           + P+ ++    L + C    A    K +    ++   +  L     L+    ++G + DA
Sbjct: 233 YKPNNFTISGALKS-CLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDA 291

Query: 359 ERIAMAMPFEPDAAVWRALLS 379
           +R+   MP + D   W  +++
Sbjct: 292 QRLFEEMP-KTDLIPWSLMIA 311


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/561 (36%), Positives = 331/561 (59%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H+  +K   + D  +   LI  YSK  LL  +  +F+ +P  +++ W ++IS +SN 
Sbjct: 309 RQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNC 368

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                ++++F +M +   L F  NQ TL+++ K+ A  S A  F   +H++S+K      
Sbjct: 369 GYDIEAMSLFTNMYKE-GLEF--NQTTLSTILKSTAG-SQANGFCEQVHTISIKSGYQYD 424

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +  ++L+  Y +    ++A KVF+     D+V Y +MI  ++Q     ++L ++  M+ 
Sbjct: 425 GYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQD 484

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            D+    +  S    A A L+A EQ + IH H +  GL  +V  G  L++ Y K G + D
Sbjct: 485 RDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDD 544

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F+E +S    ++W+AM+ G AQ G     L+LF+ +   G  P+  + ++VL+A  
Sbjct: 545 ASCIFNE-ISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACN 603

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E+ ++   M+  + + P  EHY C++  +GR GRL++A  +   MPF+  AAVW
Sbjct: 604 HAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVW 663

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL  + IH   ++     + L+ + P     ++++AN+ +  G WD VA+VR+ MK+ 
Sbjct: 664 GALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNS 723

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V+KE G SWIE+K KV+ F+ GDR H R+++IY KL +L E     GYVP+ +  LH+V
Sbjct: 724 LVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDV 783

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK + LW+HSEKLA+AFGL++  P G  +R+ KNLR+C DCH +FK+IS+V  REI+
Sbjct: 784 EQIEKEQLLWHHSEKLAVAFGLIA-TPPGAPIRVKKNLRVCIDCHTAFKFISKVASREII 842

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD+NR+H F +GSC+CGD W
Sbjct: 843 VRDINRFHHFRDGSCSCGDYW 863



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 151/303 (49%), Gaps = 4/303 (1%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN+ +L+++   CA L     +G+ +H   +KL     PF  +AL+  Y++   P+ A  
Sbjct: 186 PNEFSLSTVLNACAGLEDEN-YGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIA 244

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF EI + D+V + A+I G   + +   +L +   M S  V  +M+ +S AL+A A +  
Sbjct: 245 VFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGL 304

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           ++  R +H   +   ++ +  VG GLID Y K G++ DAR VFD  +   + I WN++++
Sbjct: 305 VKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDL-MPXKDVIVWNSIIS 363

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GY+  G     + LF  +   G   ++ +   +L +   +   G  E+ +  + ++   +
Sbjct: 364 GYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQ-VHTISIKSGYQ 422

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
                   L+ + G+   LEDA ++    P E D   + ++++  + +G  + A KM  R
Sbjct: 423 YDGYVANSLLDSYGKCCLLEDAAKVFEVCPAE-DLVAYTSMITAYSQYGLGEEALKMYLR 481

Query: 397 LID 399
           + D
Sbjct: 482 MQD 484



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 111/278 (39%), Gaps = 43/278 (15%)

Query: 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL--------------- 186
           V+ YS+ +    A+K+  +  E D+V + A+I G+ QN R  ++L               
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 187 -------------------------SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
                                    ++  +M S+ +    + +S  L A A L       
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
            +HG+ +  G D +      L+D Y K+G    A  VF E +   + ++WNA++AG    
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYE-IPKPDIVSWNAVIAGCVLH 267

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
                 L+L   +     AP  ++  + L A    GL  +  + +    ++  +EP    
Sbjct: 268 EKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLV-KLGRQLHSALMKMDMEPDSFV 326

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
              LI    + G L+DA  +   MP + D  VW +++S
Sbjct: 327 GVGLIDMYSKCGLLQDARMVFDLMPXK-DVIVWNSIIS 363



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 113/285 (39%), Gaps = 27/285 (9%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           LHSL   L    KPF  +  V + S  R  D +  + D       + Y  +++ F  +  
Sbjct: 6   LHSLRTVLRKPLKPFIVNTSVKYISNLRPNDVSGFILDSSSNPSSISYPKLLLQFTASKD 65

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
           +   +++ A +    +                L +  QC  +    V+   + +++  + 
Sbjct: 66  VSSGMAIHARIIRLGLLGLR-------NRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSA 118

Query: 242 LIDGYGKAGIVSDARRVFDE--------NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           LI GY + G   +A   + E        N    +S+     +    + G Q   + L   
Sbjct: 119 LISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTE 178

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR-YKLEPGLE----HYTCLISA 348
           +   G +P+E+S   VL A   AGL  E+      MKV  Y ++ G +        L+  
Sbjct: 179 MISTGISPNEFSLSTVLNAC--AGLEDENYG----MKVHGYLIKLGYDSDPFSANALLDM 232

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
             ++G  E A  +   +P +PD   W A+++   +H K D+A K+
Sbjct: 233 YAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLHEKNDLALKL 276


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 320/555 (57%), Gaps = 12/555 (2%)

Query: 19  RIVHARALKSSQADRS-IYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS- 75
           RIVHA  + S   D   +  N+I N Y+K   L  + R+F+ +P+ ++V+WTALI+  S 
Sbjct: 107 RIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQ 166

Query: 76  -NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
            N P  +L +F  MLR   L F PN  TL+SL K   S  H    G  LH+  LK     
Sbjct: 167 NNRPRDALLLFPQMLR---LGFQPNHFTLSSLLKASGS-EHGLDPGTQLHAFCLKYGYQS 222

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             + GSALV  Y+R    D A+  FD +  +  V + A+I G A+      +L +   M+
Sbjct: 223 SVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQ 282

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             +   T +  S  L A A + A+EQ + +H H + SGL     +G  L+D Y KAG + 
Sbjct: 283 RKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSID 342

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA+RVFD  L   + ++WN M+ G AQ G     L+ F  +   G  P+E SFL VLTA 
Sbjct: 343 DAKRVFDR-LVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTAC 401

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            ++GL  E   + E MK +YK+EP + HY   +  +GR G L+ AER    MP EP AAV
Sbjct: 402 SHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAV 460

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL    +H   ++     +R  +++P+D    ++++N+ +  GRW +VA+VRK+MK+
Sbjct: 461 WGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKE 520

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
             V+K+   SW+E++  VH+F+A D  H R ++I  K  E+  + + +GYVP    +L  
Sbjct: 521 SGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLLF 580

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V  +E+ E L YHSEKLALAF L++  P G  +RI KN+R+C DCH + K++S+VV+REI
Sbjct: 581 VDQQEREEKLQYHSEKLALAFALLN-TPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREI 639

Query: 554 VVRDVNRYHRFLNGS 568
           +VRD NR+HRF +GS
Sbjct: 640 IVRDTNRFHRFRDGS 654



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           S  L+    L  +EQ R++H H V S  LD ++++   +++ Y K G + DARR+FDE +
Sbjct: 91  SKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDE-M 149

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA-GLAGES 322
              + + W A++AG++Q       L LF  +   GF P+ ++  ++L A  +  GL   +
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGT 209

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
           +  +    ++Y  +  +   + L+    R G ++ A+     MP + + + W AL+S  A
Sbjct: 210 Q--LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS-WNALISGHA 266

Query: 383 IHGKADMA 390
             G+ + A
Sbjct: 267 RKGEGEHA 274


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/562 (37%), Positives = 333/562 (59%), Gaps = 13/562 (2%)

Query: 17  DPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           D R +HA  L  SQ   S++  N+LI  Y K   ++ + R+F+ +P+ ++ SWT+LI+ +
Sbjct: 82  DARAIHAH-LAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGY 140

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + + +   +L +   MLR     F PN  T ASL K  A  S +   G  +H+L++K   
Sbjct: 141 AQNDMPDEALGLLPGMLRG---RFKPNGFTFASLLKA-AGASASSGIGEQIHALTVKYDW 196

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           HD  + GSAL+  Y+R    D A  VFD++  ++ V + A+I GFA+      +L +FA+
Sbjct: 197 HDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAE 256

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+ +   +T +  S    A A + A+EQ + +H H + SG   +  VG  ++D Y K+G 
Sbjct: 257 MQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGS 316

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DAR+VFD  +   + + WN+M+  +AQ G     +  F  +   G   ++ +FL++LT
Sbjct: 317 MIDARKVFDR-VDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILT 375

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  E +++ + MK  Y LEP ++HY  ++  +GRAG L DA      MP +P A
Sbjct: 376 ACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTA 434

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           AVW ALL    +H  A +       + +++P D    V++ N+ +  G+WD  A VRK+M
Sbjct: 435 AVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMM 494

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           K   V+KE   SW+E++  VH+F+A D  H R+E+IY K  E+  +  + GYVP  D +L
Sbjct: 495 KATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVL 554

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            +V ++E++  L YHSEK+ALAF L++  P G T+RI+KN+RIC DCH +F+YIS+V +R
Sbjct: 555 LHVDEQERQAKLQYHSEKIALAFALIN-MPLGATIRIMKNIRICGDCHSAFRYISKVFKR 613

Query: 552 EIVVRDVNRYHRFLNGSCTCGD 573
           EIVVRD NR+H F +GSC+CGD
Sbjct: 614 EIVVRDTNRFHHFSSGSCSCGD 635



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 12/221 (5%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           + A A   +++  R IH H   S    +V +   LI  Y K G V+DARRVFD  +   +
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFD-GMPARD 129

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
             +W +++AGYAQ       L L   +    F P+ ++F ++L A   +  +G  E+ I 
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ-IH 188

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV-WRALLSFSAIHGK 386
            + V+Y     +   + L+    R GR++ A  IA+    E    V W AL++  A  G 
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMA--IAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 387 AD----MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            +    M ++M +   +   +    Y  V + ++G+G  ++
Sbjct: 247 GETTLLMFAEMQRNGFEATHF---TYSSVFSAIAGIGALEQ 284


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 319/559 (57%), Gaps = 10/559 (1%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA-HSNSP 78
            +HA   K   + D ++ N L+T Y K   +    R+F    + +++SW AL+S  H N  
Sbjct: 453  IHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNET 512

Query: 79   L--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
                L IF  ML      F PN  T  S+ ++C+SLS   L G  +H+  +K SL    F
Sbjct: 513  CDTGLRIFNQMLAE---GFNPNMYTFISILRSCSSLSDVDL-GKQVHAQIVKNSLDGNDF 568

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             G+ALV  Y++ R  ++A+ +F+ + +RD+  +  ++ G+AQ+ +   ++  F  M+   
Sbjct: 569  VGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREG 628

Query: 197  VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
            V    + ++ +L   + +A ++  R +H  A+ +G   ++ V + L+D Y K G V DA 
Sbjct: 629  VKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 688

Query: 257  RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             VFD  L   ++++WN ++ GY+Q G     L+ F  +   G  PDE +F+ VL+A  + 
Sbjct: 689  VVFD-GLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHM 747

Query: 317  GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            GL  E +K    +   Y + P +EHY C++  +GRAG+  + E     M    +  +W  
Sbjct: 748  GLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWET 807

Query: 377  LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            +L    +HG  +   +   +L ++ P  DS Y++++N+ +  G WD+V  VR +M  R V
Sbjct: 808  VLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGV 867

Query: 437  RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            +KE G SW+EV G+VHVFL+ D  H +  +I+ KL +L ++   +GY P  D +LHNV D
Sbjct: 868  KKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSD 927

Query: 497  REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            REK+E L+YHSE+LALAF L+S + R KT+RI KNLRIC DCH+  K IS +  +E+VVR
Sbjct: 928  REKQELLFYHSERLALAFALLSTSTR-KTIRIFKNLRICGDCHDFMKSISEITNQELVVR 986

Query: 557  DVNRYHRFLNGSCTCGDLW 575
            D+N +H F NGSC+C + W
Sbjct: 987  DINCFHHFKNGSCSCQNFW 1005



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 194/416 (46%), Gaps = 15/416 (3%)

Query: 19  RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           +IVH+ A++   + D  I   L+  YSK  L   +L++F  I  P++VSW+A+I+     
Sbjct: 350 QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQK 409

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL-HD 133
             S  +  +F  M RH  +  +PNQ TLASL      L   + +G S+H+   K    +D
Sbjct: 410 GQSREAAEVFKRM-RHSGV--IPNQFTLASLVSAATDLGDLY-YGESIHACVCKYGFEYD 465

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
              C +ALV  Y +  S  +  +VF+    RD++ + A++ GF  N      L +F  M 
Sbjct: 466 NTVC-NALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQML 524

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           +      MY     LR+ + L+ ++  + +H   V + LD N  VGT L+D Y K   + 
Sbjct: 525 AEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLE 584

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA  +F+  L   +  AW  ++AGYAQ G     ++ F  ++  G  P+E++  + L+  
Sbjct: 585 DAETIFNR-LIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSG- 642

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           C+     +S + +  M ++      +   + L+    + G +EDAE +   +    D   
Sbjct: 643 CSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVS 701

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           W  ++   + HG+   A K  + ++D     D    I   VLS       + E +K
Sbjct: 702 WNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFI--GVLSACSHMGLIEEGKK 755



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 181/370 (48%), Gaps = 15/370 (4%)

Query: 16  TDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS-- 72
            + + +H + +KS    D  ++N+L+  Y+K    +Y+ ++F  IP  ++VSWTALI+  
Sbjct: 145 NEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGF 204

Query: 73  -AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
            A      ++N+F  M R    +   N+ T A+  K C S+     FG  +H+ ++K+  
Sbjct: 205 VAEGYGSGAVNLFCEMRREGVEA---NEFTYATALKAC-SMCLDLEFGKQVHAEAIKVGD 260

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F GSALV  Y++      A++VF  + +++ V + A++ GFAQ       L++F  
Sbjct: 261 FSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCR 320

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M  S++  + + +S  L+  A    +   +++H  A+  G + +  +   L+D Y K G+
Sbjct: 321 MTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGL 380

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
             DA +VF   +   + ++W+A++    Q+G      E+F  +   G  P++++  ++++
Sbjct: 381 AGDALKVF-VRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVS 439

Query: 312 ALCNAG--LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           A  + G    GES   I     +Y  E        L++   + G ++D  R+  A     
Sbjct: 440 AATDLGDLYYGES---IHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATT-NR 495

Query: 370 DAAVWRALLS 379
           D   W ALLS
Sbjct: 496 DLISWNALLS 505



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 193/408 (47%), Gaps = 21/408 (5%)

Query: 21  VHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---N 76
           VHA A+K    +D  + + L+  Y+K   +  + R+F  +P  N VSW AL++  +   +
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +   LN+F  M     ++F  ++ TL+++ K CA+ S     G  +HSL++++      F
Sbjct: 311 AEKVLNLFCRM-TGSEINF--SKFTLSTVLKGCAN-SGNLRAGQIVHSLAIRIGCELDEF 366

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
               LV  YS+     +A KVF  I + DVV + A+I    Q  +  ++  VF  MR S 
Sbjct: 367 ISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSG 426

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    + ++  + AA +L  +     IH      G + +  V   L+  Y K G V D  
Sbjct: 427 VIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGC 486

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RVF E  +  + I+WNA+++G+       T L +F+ +   GF P+ Y+F+++L + C++
Sbjct: 487 RVF-EATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRS-CSS 544

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               +  K +    V+  L+      T L+    +   LEDAE I   +  + D   W  
Sbjct: 545 LSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTV 603

Query: 377 LLSFSAIHGKADMASK----MGKRLIDINPYDDSAYVIVANVLSGVGR 420
           +++  A  G+ + A K    M +  +  N +       +A+ LSG  R
Sbjct: 604 IVAGYAQDGQGEKAVKCFIQMQREGVKPNEF------TLASSLSGCSR 645



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 149/298 (50%), Gaps = 4/298 (1%)

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
           R  + + +TCAS       G ++H   +K  ++      ++LV+ Y++  S + A KVF 
Sbjct: 129 RQYSGMLRTCASKGD-LNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG 187

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
           EI ERDVV + A+I GF        ++++F +MR   V +  +  + AL+A +    +E 
Sbjct: 188 EIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEF 247

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            + +H  A+  G   ++ VG+ L+D Y K G +  A RVF   +   N+++WNA++ G+A
Sbjct: 248 GKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVF-LCMPKQNAVSWNALLNGFA 306

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q GD   VL LF  +        +++   VL    N+G    + + +  + +R   E   
Sbjct: 307 QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNL-RAGQIVHSLAIRIGCELDE 365

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
               CL+    + G   DA ++ + +  +PD   W A+++     G++  A+++ KR+
Sbjct: 366 FISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAIITCLDQKGQSREAAEVFKRM 422


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/559 (37%), Positives = 320/559 (57%), Gaps = 11/559 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LK     D   +N L+  Y KS+ L  + +LF+ +P  N +S+  LI  ++ S  
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++ +F+ + R      LPNQ T AS+ + CA++      G  +H   +K+ LH   F
Sbjct: 120 FLEAIELFVRLHR----EVLPNQFTFASVLQACATME-GLNLGNQIHCHVIKIGLHSDVF 174

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +AL+  Y++    +N+ ++F E   R+ V +  +IVG  Q      +L +F +M    
Sbjct: 175 VSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYR 234

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V +T    S ALRA A LAA+E    IH   V +  D++++V   LID Y K G + DAR
Sbjct: 235 VQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDAR 294

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFD  ++  + ++WNAM++GY+  G     L +F  ++     PD+ +F+ VL+A  NA
Sbjct: 295 LVFDL-MNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANA 353

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  + + +   M   + +EP +EHYTC++  +GR G L+ A ++   +PF+P   VWRA
Sbjct: 354 GLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRA 413

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    IH   ++     +R++++ P D + +V+++N+ +   RWD VA VRK MK + V
Sbjct: 414 LLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGV 473

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE G SWIE +G VH F  GD  H     I   L  L  + ++ GY+P ++ +L +V D
Sbjct: 474 KKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVED 533

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK   LW HSE+LAL+FG++   P G  +RI+KNLRIC DCH + K IS+VV+REIVVR
Sbjct: 534 EEKERLLWVHSERLALSFGIIR-TPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVR 592

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D+NR+H F  G C+CGD W
Sbjct: 593 DINRFHHFQEGLCSCGDYW 611


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/561 (37%), Positives = 317/561 (56%), Gaps = 8/561 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   +K+ +  D  +   L+  Y+K   L  + ++F+ +P  +++ W ALIS  S+ 
Sbjct: 326 RQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHD 385

Query: 78  PLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                 L++F  M R   L    N+ TLAS+ K+ AS S A      +H+L+ K+ L   
Sbjct: 386 GRHGEVLSLFHRM-RKEGLDLDVNRTTLASVLKSTAS-SEAICHTRQVHALAEKIGLLSD 443

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + L+  Y +    D A KVF E R  D++    M+   +Q     D++ +F  M  
Sbjct: 444 SHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLR 503

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +    + +S  L A   L+A EQ + +H H +      +V  G  L+  Y K G + D
Sbjct: 504 KGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIED 563

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F   L     ++W+AM+ G AQ G     L+LFH +   G AP+  +  +VL+A  
Sbjct: 564 ADMAF-SGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACN 622

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  +++K+ E MK  + ++   EHY C+I  +GRAG+LEDA  +   MPF+ +AAVW
Sbjct: 623 HAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVW 682

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL  S +H   ++     ++L  + P     +V++AN  +  G WDE+A+VRK+MKD 
Sbjct: 683 GALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDS 742

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V+KE   SW+E+K KVH F+ GD+ H  T DIY KLAEL +   + GYVP  +  LH+V
Sbjct: 743 NVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDV 802

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK   L +HSE+LA+AF L+S  P G  +R+ KNLRICRDCH +FKYIS++V REI+
Sbjct: 803 DRSEKELLLSHHSERLAVAFALIS-TPSGAPIRVKKNLRICRDCHVAFKYISKIVSREII 861

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD+NR+H F NG+C+CGD W
Sbjct: 862 IRDINRFHHFTNGTCSCGDYW 882



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 190/418 (45%), Gaps = 20/418 (4%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           +H+  LKS        N+L+T YS+  L S +  +F+ IP P  VSW++L++A+SN+ + 
Sbjct: 26  LHSHLLKSGLL-AGFSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMP 84

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
            +  L+           N+  L  + K    +     FG  +H+L++   L    F  +A
Sbjct: 85  RDALLAFRAMRGRGVPCNEFALPVVLKCAPDVR----FGAQVHALAVATRLVHDVFVANA 140

Query: 141 LVHFYSRFRSPDNAKKVFDEI----RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           LV  Y  F   D A+++FDE      ER+ V +  MI  + +N +  D++ VF +M  S 
Sbjct: 141 LVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSG 200

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                +  S  + A      +E  R +HG  V +G +++V     L+D Y K G +  A 
Sbjct: 201 ERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAA 260

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF E +   + ++WNA ++G    G     LEL   ++  G  P+ ++  +VL A   A
Sbjct: 261 TVF-EKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGA 319

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G A    + I    V+   +        L+    + G L+DA ++   MP   D  +W A
Sbjct: 320 G-AFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLILWNA 377

Query: 377 LLSFSAIHGK----ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           L+S  +  G+      +  +M K  +D+    D     +A+VL      + +   R+V
Sbjct: 378 LISGCSHDGRHGEVLSLFHRMRKEGLDL----DVNRTTLASVLKSTASSEAICHTRQV 431


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 327/561 (58%), Gaps = 12/561 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
           VHA  +K+  +    +   LI  Y+K   L  + R+ + +P  N+VSWTA+IS +S    
Sbjct: 32  VHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGY 91

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +  +L++F+ ML   T    PN+ T A++  +C S S  F  G  +HSL +K S     F
Sbjct: 92  ASEALHLFVEMLMSGTA---PNEFTFATVLTSCTS-SSGFQLGRQIHSLVIKTSFESHIF 147

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GS+L+  Y++      A++VFD + ERDVV   A+I G+AQ     ++L +F  ++   
Sbjct: 148 VGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREG 207

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           + S     +  L A + LAA++  R +H H + + L   V++   LID Y K G ++ +R
Sbjct: 208 MRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSR 267

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALCN 315
           R+FD ++     I+WNAM+ GY++ G     +ELF L+ E     PD  +FLAVL+   +
Sbjct: 268 RIFD-SMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 326

Query: 316 AGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            G+     E + E +  +   EP +EHY C++   GRAGR+E+A      MPFEP AA+W
Sbjct: 327 GGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW 386

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            +LL    +H    +   + +RL++I   +   YVI++N+ +  GRWD+V  VR++MK++
Sbjct: 387 GSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEK 446

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V KE GRSWIE+   +H F A DR H R E+++ K+ EL  + +  GYVP    +L++V
Sbjct: 447 AVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDV 506

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            D +K + L  HSEKLALAFGL+   P G  +RI+KNLRIC DCH   K++SRV  RE+ 
Sbjct: 507 DDEQKEKILQGHSEKLALAFGLIC-TPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVS 565

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD NR+H  + G+C+CGD W
Sbjct: 566 LRDKNRFHHIVGGTCSCGDYW 586



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 176/369 (47%), Gaps = 14/369 (3%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           S+   C S + A   G  +H+  +K       +  + L+  Y++ R   +A++V DE+ E
Sbjct: 15  SVLTECISQT-AIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPE 73

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           R+VV + AMI G++Q     ++L +F +M  S      +  +  L +    +  +  R I
Sbjct: 74  RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 133

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H   + +  + ++ VG+ L+D Y KAG + +ARRVFD  L   + ++  A+++GYAQ G 
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFD-GLPERDVVSCTAIISGYAQLGL 192

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPGLEHY 342
               L+LF  L+  G   +  ++ +VLTAL  +GLA  +  + +    +R KL   +   
Sbjct: 193 DEEALDLFRRLQREGMRSNYVTYASVLTAL--SGLAALDHGRQVHSHVLRAKLPFYVVLQ 250

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
             LI    + G L  + RI  +MP E     W A+L   + HG    A ++ K + + N 
Sbjct: 251 NSLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHGLGREAVELFKLMKEENK 309

Query: 403 YDDSAYVIVANVLSGV---GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG-KVHVFLAGD 458
               +   +A VLSG    G  D   E+   M +   +K+G    IE  G  V +F    
Sbjct: 310 VKPDSVTFLA-VLSGCSHGGMEDRGLEIFYEMVN---QKDGFEPEIEHYGCVVDLFGRAG 365

Query: 459 RMHERTEDI 467
           R+ E  E I
Sbjct: 366 RVEEAFEFI 374


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 311/549 (56%), Gaps = 9/549 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           ++D  + N LI  Y KS  +    ++F  + +P++VSW AL+S   +S        IF  
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           ML      F PN  T  S+ ++C+SL     FG  +H+  +K S  D  F G+ALV  Y+
Sbjct: 244 MLLE---GFKPNMFTFISVLRSCSSLLDP-EFGKQVHAHIIKNSSDDDDFVGTALVDMYA 299

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           + R  ++A   FD +  RD+  +  +I G+AQ  +   ++  F  M+   +    Y ++ 
Sbjct: 300 KARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLAS 359

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L   + +A +E  R +H  AV +G   ++ VG+ L+D YGK G +  A  +F + L   
Sbjct: 360 CLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIF-KGLISR 418

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + ++WN +++GY+Q G     LE F ++   G  PDE +F+ VL+A    GL  E +K  
Sbjct: 419 DIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRF 478

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           + M   Y + P +EHY C++  +GRAG+  + +     M   P + +W  +L    +HG 
Sbjct: 479 DSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGN 538

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            D   K  K+L ++ P  DS+Y++++N+ +  GRWD+V  +R +M  R ++KE G SW+E
Sbjct: 539 VDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVE 598

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           V G+VHVFL+ D  H +  +IY KL +L +    +GYVP  + +LHNV ++EK E L+YH
Sbjct: 599 VDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYH 658

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SE+LAL+F L+S     K +RI KNLRIC DCH+  K IS +  +EIVVRD+ R+H F  
Sbjct: 659 SERLALSFALLSTNAV-KPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKR 717

Query: 567 GSCTCGDLW 575
           G+C+C D W
Sbjct: 718 GTCSCQDRW 726



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 193/413 (46%), Gaps = 14/413 (3%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA-- 73
           + +++HA AL+S  + D  +  +L+  YSK   +  +L++F  I +P++V+W+A+I+   
Sbjct: 69  EGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLD 128

Query: 74  -HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
              +   +  +F  M R       PNQ TL+SL  T  ++     +G S+H    K    
Sbjct: 129 QQGHGQEAAELFHLMRRKGA---RPNQFTLSSLVSTATNMGD-LRYGQSIHGCICKYGFE 184

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                 + L+  Y + R  ++  KVF+ +   D+V + A++ GF  +        +F  M
Sbjct: 185 SDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQM 244

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
                   M+     LR+ + L   E  + +H H + +  D +  VGT L+D Y KA  +
Sbjct: 245 LLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCL 304

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DA   FD  L   +  +W  +++GYAQ       ++ F  ++  G  P+EY+  + L+ 
Sbjct: 305 EDAGVAFDR-LVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSG 363

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            C+     E+ + +  + V+      +   + L+   G+ G +E AE I   +    D  
Sbjct: 364 -CSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIV 421

Query: 373 VWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDE 423
            W  ++S  + HG+ + A +  + ++   I P D++ ++ V +  S +G  +E
Sbjct: 422 SWNTIISGYSQHGQGEKALEAFRMMLSEGIMP-DEATFIGVLSACSFMGLVEE 473



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 20/371 (5%)

Query: 54  RLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           RLF  +P  N VSW AL++ ++   +    L +F  M    T  F  ++ TL+++ K CA
Sbjct: 6   RLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECET-KF--SKFTLSTVLKGCA 62

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
           + + +   G  LH+L+L+       F G +LV  YS+  +  +A KVF +IR  DVV + 
Sbjct: 63  N-TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWS 121

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           AMI G  Q     ++  +F  MR        + +S  +  A  +  +   + IHG     
Sbjct: 122 AMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKY 181

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           G + + +V   LI  Y K+  V D  +VF E ++  + ++WNA+++G+           +
Sbjct: 182 GFESDNLVSNPLIMMYMKSRCVEDGNKVF-EAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           F+ + + GF P+ ++F++VL + C++ L  E  K +    ++   +      T L+    
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRS-CSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYA 299

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK----MGKRLIDINPYDDS 406
           +A  LEDA  +A       D   W  ++S  A   +A+ A K    M +  I  N Y   
Sbjct: 300 KARCLEDA-GVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEY--- 355

Query: 407 AYVIVANVLSG 417
               +A+ LSG
Sbjct: 356 ---TLASCLSG 363



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+++F  + E++ V + A++ G+AQ       L +F  M+  +   + + +S  L+  A 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
             ++ + +V+H  A+ SG + +  +G  L+D Y K G V DA +VF + +   + +AW+A
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTK-IRNPDVVAWSA 122

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG--LAGESEKWIERMKV 331
           M+ G  QQG      ELFHL+  +G  P++++  ++++   N G    G+S   I     
Sbjct: 123 MITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQS---IHGCIC 179

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           +Y  E        LI    ++  +ED  ++  AM   PD   W ALLS
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLS 226


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 327/561 (58%), Gaps = 12/561 (2%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
            VHA  +K+  +    +   LI  Y+K   L  + R+ + +P  N+VSWTA+IS +S    
Sbjct: 499  VHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGY 558

Query: 77   SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            +  +L++F+ ML   T    PN+ T A++  +C S S  F  G  +HSL +K S     F
Sbjct: 559  ASEALHLFVEMLMSGTA---PNEFTFATVLTSCTS-SSGFQLGRQIHSLVIKTSFESHIF 614

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             GS+L+  Y++      A++VFD + ERDVV   A+I G+AQ     ++L +F  ++   
Sbjct: 615  VGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREG 674

Query: 197  VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
            + S     +  L A + LAA++  R +H H + + L   V++   LID Y K G ++ +R
Sbjct: 675  MRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSR 734

Query: 257  RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALCN 315
            R+FD ++     I+WNAM+ GY++ G     +ELF L+ E     PD  +FLAVL+   +
Sbjct: 735  RIFD-SMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 793

Query: 316  AGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
             G+     E + E +  +   EP +EHY C++   GRAGR+E+A      MPFEP AA+W
Sbjct: 794  GGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW 853

Query: 375  RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
             +LL    +H    +   + +RL++I   +   YVI++N+ +  GRWD+V  VR++MK++
Sbjct: 854  GSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEK 913

Query: 435  RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
             V KE GRSWIE+   +H F A DR H R E+++ K+ EL  + +  GYVP    +L++V
Sbjct: 914  AVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDV 973

Query: 495  GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
             D +K + L  HSEKLALAFGL+   P G  +RI+KNLRIC DCH   K++SRV  RE+ 
Sbjct: 974  DDEQKEKILQGHSEKLALAFGLIC-TPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVS 1032

Query: 555  VRDVNRYHRFLNGSCTCGDLW 575
            +RD NR+H  + G+C+CGD W
Sbjct: 1033 LRDKNRFHHIVGGTCSCGDYW 1053



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 176/369 (47%), Gaps = 14/369 (3%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           S+   C S + A   G  +H+  +K       +  + L+  Y++ R   +A++V DE+ E
Sbjct: 482 SVLTECISQT-AIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPE 540

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           R+VV + AMI G++Q     ++L +F +M  S      +  +  L +    +  +  R I
Sbjct: 541 RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 600

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H   + +  + ++ VG+ L+D Y KAG + +ARRVFD  L   + ++  A+++GYAQ G 
Sbjct: 601 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFD-GLPERDVVSCTAIISGYAQLGL 659

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPGLEHY 342
               L+LF  L+  G   +  ++ +VLTAL  +GLA  +  + +    +R KL   +   
Sbjct: 660 DEEALDLFRRLQREGMRSNYVTYASVLTAL--SGLAALDHGRQVHSHVLRAKLPFYVVLQ 717

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
             LI    + G L  + RI  +MP E     W A+L   + HG    A ++ K + + N 
Sbjct: 718 NSLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHGLGREAVELFKLMKEENK 776

Query: 403 YDDSAYVIVANVLSGV---GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG-KVHVFLAGD 458
               +   +A VLSG    G  D   E+   M +   +K+G    IE  G  V +F    
Sbjct: 777 VKPDSVTFLA-VLSGCSHGGMEDRGLEIFYEMVN---QKDGFEPEIEHYGCVVDLFGRAG 832

Query: 459 RMHERTEDI 467
           R+ E  E I
Sbjct: 833 RVEEAFEFI 841


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/565 (35%), Positives = 327/565 (57%), Gaps = 22/565 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  A++S  ++D  + N L+  Y+K   ++ + +LF  +P  ++ SW A+I  +S    
Sbjct: 243 IHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYS---- 298

Query: 80  SLNIFLSMLRHPTLSFL---------PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
                L+   H  L+F          PN  T+ S+   CA L  A   G  +H  +++  
Sbjct: 299 -----LNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHL-FALEQGQQIHGYAIRSG 352

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                  G+ALV+ Y++  + ++A K+F+ + +++VV + A+I G++Q+    ++L++F 
Sbjct: 353 FESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFI 412

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           +M++  +    + +   L A A   A+EQ + IHG+ + SG + NV+VGTGL+D Y K G
Sbjct: 413 EMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCG 472

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V+ A+++F E +   + ++W  M+  Y   G     L LF  ++  G   D  +F A+L
Sbjct: 473 NVNTAQKLF-ERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAIL 531

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           TA  +AGL  +  ++ + MK  Y L P LEHY CL+  +GRAG L++A  I   M  EPD
Sbjct: 532 TACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPD 591

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A VW ALL    IH   ++  +  K L +++P +   YV+++N+ +   RW++VA++RK+
Sbjct: 592 ANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKM 651

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK++ V+K+ G S + V   V  FL GDR H ++E IY  L  L E+  + GYVP  +  
Sbjct: 652 MKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLA 711

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L +V +  K   L  HSEKLA++FG+++ +P G  +RI+KNLR+C DCH + K+IS++V 
Sbjct: 712 LQDVEEEAKENILSSHSEKLAISFGIINTSP-GIPIRIMKNLRVCSDCHNATKFISKIVG 770

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REI+VRD NR+H   NG C+CGD W
Sbjct: 771 REIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 197/404 (48%), Gaps = 5/404 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
           ++D  +   L + Y+K   L  + ++F+ +P  ++VSW A+I+ +S +            
Sbjct: 152 ESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSE 211

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                  PN  TL S+   CA L  A   G  +H  +++  +       + LV+ Y++  
Sbjct: 212 MQVNGIKPNSSTLVSVMPVCAHLL-ALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCG 270

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           + + A K+F+ +  RDV  + A+I G++ NS+  ++L+ F  M+   +      +   L 
Sbjct: 271 NVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLP 330

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A A L A+EQ + IHG+A+ SG + N +VG  L++ Y K G V+ A ++F E +   N +
Sbjct: 331 ACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLF-ERMPKKNVV 389

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           AWNA+++GY+Q G     L LF  ++ +G  PD ++ ++VL A C   LA E  K I   
Sbjct: 390 AWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPA-CAHFLALEQGKQIHGY 448

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
            +R   E  +   T L+    + G +  A+++   MP E D   W  ++    IHG  + 
Sbjct: 449 TIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIHGHGED 507

Query: 390 ASKMGKRLIDI-NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           A  +  ++ +     D  A+  +    S  G  D+  +  + MK
Sbjct: 508 ALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMK 551



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 162/326 (49%), Gaps = 10/326 (3%)

Query: 63  NIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119
           N V W   I  +  +     +L ++  M R       P++    S+ K C S S     G
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQR---TGINPDKLVFLSVIKACGSQSD-LQAG 139

Query: 120 LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
             +H   +          G+AL   Y++  S +NA++VFD + +RDVV + A+I G++QN
Sbjct: 140 RKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQN 199

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
            +  ++L++F++M+ + +      +   +   A L A+EQ + IH +A+ SG++ +V+V 
Sbjct: 200 GQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVV 259

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
            GL++ Y K G V+ A ++F E + + +  +WNA++ GY+        L  F+ +++RG 
Sbjct: 260 NGLVNMYAKCGNVNTAHKLF-ERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGI 318

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
            P+  + ++VL A C    A E  + I    +R   E        L++   + G +  A 
Sbjct: 319 KPNSITMVSVLPA-CAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAY 377

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHG 385
           ++   MP + +   W A++S  + HG
Sbjct: 378 KLFERMP-KKNVVAWNAIISGYSQHG 402


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/560 (35%), Positives = 326/560 (58%), Gaps = 8/560 (1%)

Query: 19  RIVHARALKSSQADRSIYN-NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H+  +K      S     LI  YSK N +  +  +F  +P  ++++W A+IS HS +
Sbjct: 232 RQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQN 291

Query: 78  PLSLNI--FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
                      ++    + F  NQ TL+++ K+ A+L   ++    +H+LSLK       
Sbjct: 292 EEDEEAASLFPLMHTEGIGF--NQTTLSTVLKSIAALQANYMC-RQIHALSLKSGFEFDN 348

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           +  ++L+  Y +    ++A +VF+E    D+V + +++  +AQ+ +  ++L ++ +M+  
Sbjct: 349 YVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDR 408

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +    +  S  L A A L+A EQ + +H H +  G   ++  G  L++ Y K G + DA
Sbjct: 409 GIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDA 468

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
              F   + V   ++W+AM+ G AQ G     L+LF  +   G  P+  + ++VL A  +
Sbjct: 469 SCAFSR-IPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNH 527

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  E++ +   MK+ + +EP  EHY C+I  +GRAG+LE A  +   MPF+ +A VW 
Sbjct: 528 AGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWG 587

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ALL  + IH   D+  +  + L+ + P     +V++AN+ + VG WD+VA VR++MKD +
Sbjct: 588 ALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGK 647

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           V+KE G SW+EVK KV+ F+ GDR H R+ +IY KL EL +  ++ GYVP+ +  LH+V 
Sbjct: 648 VKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVE 707

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
             EK + L++HSEKLA+AFGL++  P G  +R+ KNLRIC DCH   K+IS++V REI+V
Sbjct: 708 RSEKEQLLYHHSEKLAVAFGLIA-TPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIV 766

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H F  GSC+CG+ W
Sbjct: 767 RDTNRFHHFREGSCSCGEYW 786



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 205/426 (48%), Gaps = 13/426 (3%)

Query: 15  STDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           S   R +H   +K    +D    N L+  Y+K  +L  +  +F+ I  P+IVSW A+I+ 
Sbjct: 127 SVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAG 186

Query: 74  ---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
              H     +L +   M +       PN  TL+S  K CA ++   L G  LHS  +K+ 
Sbjct: 187 CVLHEYHHRALELLREMNKS---GMCPNMFTLSSALKACAGMALREL-GRQLHSSLIKMD 242

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           +    F G  L+  YS+  S D+A+ VF  + ERD++ + A+I G +QN    ++ S+F 
Sbjct: 243 MGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFP 302

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            M +  +G     +S  L++ A L A   CR IH  ++ SG + +  V   LID YGK G
Sbjct: 303 LMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCG 362

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V DA RVF+E+  +++ + + +++  YAQ G     L L+  ++ RG  PD +   ++L
Sbjct: 363 HVEDATRVFEES-PIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLL 421

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A C +  A E  K +    +++     +     L++   + G +EDA      +P    
Sbjct: 422 NA-CASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGI 480

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
            + W A++   A HG    A ++ K+++ +    +  ++ + +VL        VAE +  
Sbjct: 481 VS-WSAMIGGLAQHGYGKEALQLFKQMLKVGVPPN--HITLVSVLCACNHAGLVAEAKHY 537

Query: 431 MKDRRV 436
               ++
Sbjct: 538 FNSMKI 543



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 183/381 (48%), Gaps = 14/381 (3%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH 90
           +D  + N+L+  Y+K      +  LF+ IP  ++VSW AL S + +S +     +S+   
Sbjct: 43  SDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEA-VSLFHD 101

Query: 91  PTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
             LS + PN+ +L+S+   C  L  + + G  +H   +KL      F  +ALV  Y++  
Sbjct: 102 MVLSGIRPNEFSLSSMINVCTGLEDS-VQGRKIHGYLIKLGYDSDAFSANALVDMYAKVG 160

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
             ++A  VFDEI + D+V + A+I G   +     +L +  +M  S +   M+ +S AL+
Sbjct: 161 ILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALK 220

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A A +A  E  R +H   +   +  +  +G GLID Y K   + DAR VF + +   + I
Sbjct: 221 ACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVF-KLMPERDMI 279

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           AWNA+++G++Q  +      LF L+   G   ++ +   VL +     +A     ++ R 
Sbjct: 280 AWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKS-----IAALQANYMCRQ 334

Query: 330 KVRYKLEPGLEH----YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
                L+ G E        LI   G+ G +EDA R+    P   D  ++ +L++  A  G
Sbjct: 335 IHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPI-VDLVLFTSLVTAYAQDG 393

Query: 386 KADMASKMGKRLIDINPYDDS 406
           + + A ++   + D     DS
Sbjct: 394 QGEEALRLYLEMQDRGIKPDS 414



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 131/284 (46%), Gaps = 8/284 (2%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           N+    S+ K C +++   + G  +H + +        F  ++LV  Y++     +A+ +
Sbjct: 9   NEFAFPSVLKAC-TVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSL 67

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           FD I +R VV + A+   +  +    +++S+F DM  S +    + +S  +     L   
Sbjct: 68  FDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDS 127

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
            Q R IHG+ +  G D +      L+D Y K GI+ DA  VFDE ++  + ++WNA++AG
Sbjct: 128 VQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDE-IAKPDIVSWNAIIAG 186

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
                     LEL   +   G  P+ ++  + L A   AG+A   E   +      K++ 
Sbjct: 187 CVLHEYHHRALELLREMNKSGMCPNMFTLSSALKAC--AGMA-LRELGRQLHSSLIKMDM 243

Query: 338 GLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           G + +    LI    +   ++DA  +   MP E D   W A++S
Sbjct: 244 GSDSFLGVGLIDMYSKCNSMDDARLVFKLMP-ERDMIAWNAVIS 286


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/563 (36%), Positives = 318/563 (56%), Gaps = 34/563 (6%)

Query: 44  SKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLA 103
           SKS  L+Y+L +F+ IP P+   +  +   +    L+ N      R    S  PN+ T  
Sbjct: 65  SKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYP 124

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
            L + C  + +A   G  +H+  LK       F  + L+H Y  F+S + A++VFD + +
Sbjct: 125 PLIRACC-IDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQ 183

Query: 164 RDVVCYGAMIVGFAQ-------------------------------NSRLVDSLSVFADM 192
           RDVV + ++I G++Q                               ++RL ++ ++F  M
Sbjct: 184 RDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRM 243

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R  +V    +  +  L A   L A+EQ + IHG+   SG++ +  + T +ID Y K G +
Sbjct: 244 RLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCL 303

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A  VF+E L      +WN M+ G A  G     +ELF  +E    APD  +F+ VL+A
Sbjct: 304 EKASEVFNE-LPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSA 362

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++GL  E + + + M     L+PG+EH+ C++  +GRAG LE+A ++   MP  PDA 
Sbjct: 363 CAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAG 422

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           V  AL+    IHG  ++  ++GK++I++ P++   YV++AN+ +  GRW++VA+VRK+M 
Sbjct: 423 VLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMN 482

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           DR V+K  G S IE +  V  F+AG R H + ++IY KL E++E    +GYVP  D +LH
Sbjct: 483 DRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLH 542

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + EK   L+YHSEKLA+AFGL+   P G+TLRI KNLRICRDCH++ K IS+V +RE
Sbjct: 543 DIDEEEKENPLYYHSEKLAIAFGLLKTKP-GETLRISKNLRICRDCHQASKLISKVYDRE 601

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I++RD NR+H F  G C+C D W
Sbjct: 602 IIIRDRNRFHHFRMGGCSCKDYW 624



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 117/269 (43%), Gaps = 9/269 (3%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
           Q D   + +LIT YS+   +  +  +F  +P  N VSW A+I+A+  S      F    R
Sbjct: 183 QRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDR 242

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
               + + ++   AS+   C  L  A   G  +H    K  +       + ++  Y +  
Sbjct: 243 MRLENVVLDKFVAASMLSACTGLG-ALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCG 301

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
             + A +VF+E+ ++ +  +  MI G A + +   ++ +F +M    V          L 
Sbjct: 302 CLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLS 361

Query: 210 AAAELAAMEQCRVIHGHAV-VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-----NL 263
           A A    +E+ +    +   V GL   +     ++D  G+AG++ +AR++ +E     + 
Sbjct: 362 ACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDA 421

Query: 264 SVLNSIAWNAMMAGYAQQGDQ--STVLEL 290
            VL ++     + G  + G+Q    V+EL
Sbjct: 422 GVLGALVGACRIHGNTELGEQIGKKVIEL 450


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/561 (37%), Positives = 325/561 (57%), Gaps = 14/561 (2%)

Query: 19  RIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R+VH     +    ++ + N LI  Y K  LL  +  LF+ +P  N+VSWT +ISA+SNS
Sbjct: 36  RLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNS 95

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            L   +L+  + MLR       PN  T +S+ + C  L    L    LH   LK+ L   
Sbjct: 96  NLNHKALDFLILMLRE---GVRPNMYTYSSVLRACDGL----LNLRQLHGSILKVGLESD 148

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  SAL+  YS+     +A  VF+E+   D+V + ++I GFAQNS   ++L ++  M+ 
Sbjct: 149 VFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKR 208

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           +D  +    ++  LRA   LA +E  R +H H  V   D+++I+   L+D Y K G + D
Sbjct: 209 ADFVADQSTLTSVLRACTGLALLELGRQVHVH--VLKYDQDLILNNALLDMYCKCGSLED 266

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F   ++  + I+W+ M+AG AQ G  +  L+LF  ++ +G  P+  + L VL A  
Sbjct: 267 ANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACS 326

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  +   + + MK  + ++PG EHY C+I  +GRAG+L++A ++   M  EPDA  W
Sbjct: 327 HAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTW 386

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           R LL    +H   D+A    K ++ ++P D   Y++++N+ +   +W++VAEVR+ M+ R
Sbjct: 387 RILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTR 446

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V+K+ G SWIEV  +VH F+ GD  H R E+I  +L++L++   RLGYVP  + +L ++
Sbjct: 447 GVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDL 506

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              +  ++L YHSEKLA+ FGL+S  P  KT+ I KNLRIC DCH   K +S++  R IV
Sbjct: 507 EGEQMEDSLQYHSEKLAIVFGLMS-LPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIV 565

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD  RYH F  G C+CGD W
Sbjct: 566 IRDPIRYHHFRGGVCSCGDYW 586



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            A++Q R++H H   +G +    +   LI+ Y K G++ +AR +FDE +   N ++W  M
Sbjct: 30  GAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDE-MPDRNVVSWTTM 88

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           ++ Y+        L+   L+   G  P+ Y++ +VL A C+  L   + + +    ++  
Sbjct: 89  ISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA-CDGLL---NLRQLHGSILKVG 144

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           LE  +   + LI    + G   DA  +   M    D  VW +++   A +   D    + 
Sbjct: 145 LESDVFVRSALIDTYSKLGEQHDALNVFNEM-ITGDLVVWNSIIGGFAQNSDGDETLHLY 203

Query: 395 KRL 397
           KR+
Sbjct: 204 KRM 206


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/558 (36%), Positives = 310/558 (55%), Gaps = 4/558 (0%)

Query: 19   RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            R +H   ++S  Q D ++ N LI  Y +   L  +  +F+ +   N++SWTA+I   ++ 
Sbjct: 607  RQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQ 666

Query: 78   PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                  F    +     F P + T +S+ K C S S     G  + +  L          
Sbjct: 667  GEDRKAFELFWQMQNDGFKPVKSTFSSILKACMS-SACLDEGKKVIAHILNSGYELDTGV 725

Query: 138  GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            G+AL+  YS+  S  +A+KVFD++  RD++ +  MI G+AQN     +L     M+   V
Sbjct: 726  GNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGV 785

Query: 198  GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                +     L A +  +A+E+ + +H   V   +  +V VG  LI  Y K G + +A+ 
Sbjct: 786  VLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQE 845

Query: 258  VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            VFD N +  N + WNAM+  YAQ G  S  L+ F+ ++  G  PD  +F ++L+A  ++G
Sbjct: 846  VFD-NFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSG 904

Query: 318  LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
            L  E  +    ++ ++ L P +EHY CL+  +GRAGR ++AE +   MPF PDAAVW  L
Sbjct: 905  LVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETL 964

Query: 378  LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
            L    IHG   +A       + +N  + + YV+++NV +  GRWD+VA++R+VM+ R +R
Sbjct: 965  LGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIR 1024

Query: 438  KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
            KE GRSWIEV   +H F+A DR H  T +IY +L  L  E ER GY P    +LHN+   
Sbjct: 1025 KEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKE 1084

Query: 498  EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
             +  +L  HSE+LA+A+GL+   P G  +RI KNLRIC DCH + K+IS++V REI+ RD
Sbjct: 1085 HQETSLCTHSERLAIAYGLLK-TPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARD 1143

Query: 558  VNRYHRFLNGSCTCGDLW 575
             NR+H F NG C+C D W
Sbjct: 1144 SNRFHTFKNGKCSCEDFW 1161



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 192/379 (50%), Gaps = 11/379 (2%)

Query: 16  TDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           +D +++H   L+S  +++  + N L+  Y +   +  +  +F    + +I+SW ++I+ H
Sbjct: 503 SDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGH 562

Query: 75  SNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           +       +  +FL M +       P++ T AS+   C +   A   G  +H L ++  L
Sbjct: 563 AQHGSYEAAYKLFLEMKKE---GLEPDKITFASVLVGCKN-PEALELGRQIHMLIIESGL 618

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                 G+AL++ Y R  S  +A +VF  +R R+V+ + AMI GFA       +  +F  
Sbjct: 619 QLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQ 678

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M++          S  L+A    A +++ + +  H + SG + +  VG  LI  Y K+G 
Sbjct: 679 MQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGS 738

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           ++DAR+VFD+ +   + ++WN M+AGYAQ G   T L+  + ++ +G   +++SF+++L 
Sbjct: 739 MTDARKVFDK-MPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILN 797

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A C++  A E  K +    V+ K++  +     LIS   + G LE+A+ +      E + 
Sbjct: 798 A-CSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFT-EKNV 855

Query: 372 AVWRALLSFSAIHGKADMA 390
             W A+++  A HG A  A
Sbjct: 856 VTWNAMINAYAQHGLASKA 874



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 201/420 (47%), Gaps = 25/420 (5%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSM 87
           +D  I N+LI+ Y++   L  +  LFN +P  +++SW A+I+ ++   +   ++ ++  M
Sbjct: 418 SDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQM 477

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
               +    P + T   L   C + S A+  G  +H   L+  +       +AL++ Y R
Sbjct: 478 ---QSEGVKPGRVTFLHLLSACTN-SSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRR 533

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             S   A+ VF+  R RD++ + +MI G AQ+     +  +F +M+   +       +  
Sbjct: 534 CGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASV 593

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L       A+E  R IH   + SGL  +V +G  LI+ Y + G + DA  VF  +L   N
Sbjct: 594 LVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVF-HSLRHRN 652

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W AM+ G+A QG+     ELF  ++  GF P + +F ++L A  ++    E +K I 
Sbjct: 653 VMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIA 712

Query: 328 R-MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             +   Y+L+ G+ +   LISA  ++G + DA ++   MP   D   W  +++  A +G 
Sbjct: 713 HILNSGYELDTGVGN--ALISAYSKSGSMTDARKVFDKMP-NRDIMSWNKMIAGYAQNGL 769

Query: 387 A----DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV------RKVMKDRRV 436
                  A +M ++ + +N +   ++V + N  S     +E   V      RK+  D RV
Sbjct: 770 GGTALQFAYQMQEQGVVLNKF---SFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRV 826



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 181/396 (45%), Gaps = 5/396 (1%)

Query: 3   LDLNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPS 61
           +DL Q    + +  + + +HA+ +++        +NL+ N Y K   +S + ++F  +P 
Sbjct: 86  VDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPR 145

Query: 62  PNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
            +++SW +LIS ++        F       T  F+P++ T  S+   C S +    +G  
Sbjct: 146 RDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAE-LEYGKK 204

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +HS  ++      P   ++L++ Y +     +A++VF  I  RDVV Y  M+  +AQ + 
Sbjct: 205 IHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAY 264

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
           + + + +F  M S  +          L A    + +++ + IH  AV  GL+ ++ VGT 
Sbjct: 265 VEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTA 324

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           L   + + G V+ A++   E  +  + + +NA++A  AQ G      E ++ +   G   
Sbjct: 325 LATMFVRCGDVAGAKQAL-EAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVM 383

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           +  ++L+VL A C+   A  + + I            ++    LIS   R G L  A  +
Sbjct: 384 NRTTYLSVLNA-CSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRAREL 442

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
              MP + D   W A+++  A       A K+ K++
Sbjct: 443 FNTMP-KRDLISWNAIIAGYARREDRGEAMKLYKQM 477



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 172/381 (45%), Gaps = 19/381 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H++ +++  Q D  + N+L+  Y K   L  + ++F+ I   ++VS+  ++  ++    
Sbjct: 205 IHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAY 264

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASL---FKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
                    +  +    P++ T  +L   F T + L      G  +H L++   L+    
Sbjct: 265 VEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDE----GKRIHKLAVNEGLNSDIR 320

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+AL   + R      AK+  +   +RDVV Y A+I   AQ+    ++   +  MRS  
Sbjct: 321 VGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDG 380

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V          L A +   A+    +IH H    G   +V +G  LI  Y + G +  AR
Sbjct: 381 VVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRAR 440

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F+  +   + I+WNA++AGYA++ D+   ++L+  ++  G  P   +FL +L+A  N+
Sbjct: 441 ELFN-TMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNS 499

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP----DAA 372
             A    K I    +R  ++        L++   R G + +A+ +     FE     D  
Sbjct: 500 S-AYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNV-----FEGTRARDII 553

Query: 373 VWRALLSFSAIHGKADMASKM 393
            W ++++  A HG  + A K+
Sbjct: 554 SWNSMIAGHAQHGSYEAAYKL 574


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 317/551 (57%), Gaps = 13/551 (2%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--SPLSLNIF 84
           K  +    + N L+  Y K NLL  +  LF+ +P  N+VSWT +ISA+SN  +  +L   
Sbjct: 84  KGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCL 143

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
           + M R       PN  T +S+ + C  L +       LH   +K  L    F  SAL+  
Sbjct: 144 ILMFRE---GVRPNMFTYSSVLRACDGLPNL----RQLHCGIIKTGLESDVFVRSALIDV 196

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           YS++   DNA  VFDE+  RD+V + ++I GFAQNS   ++L++F  M+ +   +    +
Sbjct: 197 YSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATL 256

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           +  LRA   LA +E  R +H H  V   D+++I+   LID Y K G + DA   F   + 
Sbjct: 257 TSVLRACTGLALLELGRQVHVH--VLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVE 314

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             + I+W+ M+AG AQ G     LELF  ++  G  P+  + L VL A  +AGL  +   
Sbjct: 315 K-DVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWY 373

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
           +   MK  + ++PG EHY CLI  +GRAGRL++A ++   M  EPD+  WR LL    +H
Sbjct: 374 YFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVH 433

Query: 385 GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSW 444
              D+A    K++I++ P D   Y++++N+ +   RW++VAEVRK M +R +RK  G SW
Sbjct: 434 RNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSW 493

Query: 445 IEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALW 504
           IEV  ++HVF+ GD  H + E+I  +L +L+E    +GYVP  + +L ++   +K ++L 
Sbjct: 494 IEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLR 553

Query: 505 YHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF 564
           YHSEKLA+ FGL++   R KT+RI KNLRIC DCH   K +SR+  R IV+RD  RYH F
Sbjct: 554 YHSEKLAIMFGLMN-LSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHF 612

Query: 565 LNGSCTCGDLW 575
            +G C+CGD W
Sbjct: 613 QDGVCSCGDYW 623



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 144/309 (46%), Gaps = 15/309 (4%)

Query: 86  SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY 145
           +M RH   +   +  T + L K C S   A   G  +H          K F  + L++ Y
Sbjct: 45  AMERHGVFA---DAITYSELIK-CCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMY 100

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMRSSDVGSTMYCV 204
            +F   + A+ +FDE+ ER+VV +  MI  ++  ++L D +L     M    V   M+  
Sbjct: 101 VKFNLLEEAEDLFDEMPERNVVSWTTMISAYS--NKLNDKALKCLILMFREGVRPNMFTY 158

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           S  LRA   L  + Q   +H   + +GL+ +V V + LID Y K   + +A  VFDE + 
Sbjct: 159 SSVLRACDGLPNLRQ---LHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDE-MP 214

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             + + WN+++ G+AQ  D +  L LF  ++  GF  D+ +  +VL A C      E  +
Sbjct: 215 TRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRA-CTGLALLELGR 273

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
            +    +++  +  L +   LI    + G LEDA   A +   E D   W  +++  A +
Sbjct: 274 QVHVHVLKFDQDLILNN--ALIDMYCKCGSLEDANS-AFSRMVEKDVISWSTMVAGLAQN 330

Query: 385 GKADMASKM 393
           G +  A ++
Sbjct: 331 GYSRQALEL 339



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 11/264 (4%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAH 74
           R +H   +K+  ++D  + + LI  YSK + L  +L +F+ +P+ ++V W ++I   + +
Sbjct: 172 RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQN 231

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           S+   +LN+F  M R     FL +Q TL S+ + C  L+     G  +H   LK      
Sbjct: 232 SDGNEALNLFKRMKR---AGFLADQATLTSVLRACTGLA-LLELGRQVHVHVLKFD--QD 285

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +AL+  Y +  S ++A   F  + E+DV+ +  M+ G AQN     +L +F  M+ 
Sbjct: 286 LILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKE 345

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           S        V G L A +    +E+          + G+D        LID  G+AG + 
Sbjct: 346 SGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLD 405

Query: 254 DARRVFDENLSVLNSIAWNAMMAG 277
           +A ++  E     +S+ W  ++  
Sbjct: 406 EAVKLIHEMECEPDSVTWRTLLGA 429


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/548 (37%), Positives = 312/548 (56%), Gaps = 10/548 (1%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSM 87
           +D  +   L++ Y+K   L  + R+F  I   N+V+W A+I+A   H     +L  F ++
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           L+       PN  T  S+   C S S +   G  +H L +K  L       +ALV  +  
Sbjct: 506 LKE---GIKPNSSTFTSILNVCKS-SDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVN 561

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
                +AK +F+++ +RD+V +  +I GF Q+ +   +   F  M+ S +       +G 
Sbjct: 562 CGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGL 621

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A A   A+ + R +H     +  D +V+VGTGLI  Y K G + DA +VF   L   N
Sbjct: 622 LNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF-HKLPKKN 680

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
             +W +M+AGYAQ G     LELF+ ++  G  PD  +F+  L+A  +AGL  E     +
Sbjct: 681 VYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQ 740

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            MK  + +EP +EHY C++   GRAG L +A    + M  EPD+ VW ALL    +H   
Sbjct: 741 SMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNV 799

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
           ++A K  ++ ++++P D+  +VI++N+ +  G W EVA++RKVM DR V K+ G+SWIEV
Sbjct: 800 ELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEV 859

Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
            GKVH F + D+ H +TE+I+ +L  L  E  +LGYVP    +LH+V D EK +AL+YHS
Sbjct: 860 DGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHS 919

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           E+LA+ +GL+   P    + I KNLR+C DCH + K+IS++ +R+I+ RD NR+H F +G
Sbjct: 920 ERLAITYGLLKTPPLTPIV-ISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDG 978

Query: 568 SCTCGDLW 575
            C+CGD W
Sbjct: 979 VCSCGDFW 986



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 185/417 (44%), Gaps = 12/417 (2%)

Query: 12  QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           +N     RI +       Q D  + N LI  Y+K      + ++F+ +   ++ SW  L+
Sbjct: 124 KNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLL 183

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
             +    L    F    +    S  P++RT  S+   CA   +    G  L++L LK   
Sbjct: 184 GGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDK-GRELYNLILKAGW 242

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F G+AL++ + +     +A KVFD +  RD+V + +MI G A++ R   + ++F  
Sbjct: 243 DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQR 302

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M    V          LRA     A+EQ + +H      G D  + VGT ++  Y K G 
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGS 362

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA  VFD  +   N ++W AM+AG+AQ G        F+ +   G  P+  +F+++L 
Sbjct: 363 MEDALEVFDL-VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILG 421

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A C++  A +  + I+   +           T L+S   + G L+DA R+   +  + + 
Sbjct: 422 A-CSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNV 479

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSG-----VGRW 421
             W A+++    H + D A    + L+   I P + S +  + NV        +G+W
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKW 535



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 128/265 (48%), Gaps = 16/265 (6%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VH   +K+  ++D  + N L++ +     L  +  LFN +P  ++VSW  +I+    H  
Sbjct: 536 VHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGK 595

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + ++ + F  M++   +   P++ T   L   CAS   A   G  LH+L  + +      
Sbjct: 596 NQVAFDYF-KMMQESGIK--PDKITFTGLLNACAS-PEALTEGRRLHALITEAAFDCDVL 651

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+ L+  Y++  S ++A +VF ++ +++V  + +MI G+AQ+ R  ++L +F  M+   
Sbjct: 652 VGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEG 711

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV---IVGTG-LIDGYGKAGIV 252
           V        GAL A A    +E+      H   S  + N+   +   G ++D +G+AG++
Sbjct: 712 VKPDWITFVGALSACAHAGLIEEGL----HHFQSMKEFNIEPRMEHYGCMVDLFGRAGLL 767

Query: 253 SDARRVFDENLSVLNSIAWNAMMAG 277
           ++A     +     +S  W A++  
Sbjct: 768 NEAVEFIIKMQVEPDSRVWGALLGA 792



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 118/263 (44%), Gaps = 8/263 (3%)

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           R P     VF +I+  D     A++   ++  +  +++ V   + SS +       S  L
Sbjct: 60  RCPKGRCVVFADIK--DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALL 117

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +   +   +     I+ H   SG+  ++ +   LI+ Y K G    A+++FD+ +   + 
Sbjct: 118 QLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDD-MREKDV 176

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
            +WN ++ GY Q G      +L   +      PD+ +F+++L A  +A    +  + +  
Sbjct: 177 YSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRE-LYN 235

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           + ++   +  L   T LI+   + G + DA ++   +P   D   W ++++  A HG+  
Sbjct: 236 LILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFK 294

Query: 389 MASKMGKRLID--INPYDDSAYV 409
            A  + +R+ +  + P D  A+V
Sbjct: 295 QACNLFQRMEEEGVQP-DKVAFV 316



 Score = 39.7 bits (91), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           LN    P+   T+ R +HA   +++   D  +   LI+ Y+K   +  + ++F+ +P  N
Sbjct: 622 LNACASPE-ALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKN 680

Query: 64  IVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
           + SWT++I+    H     +L +F  M +       P+  T       CA   HA L   
Sbjct: 681 VYSWTSMIAGYAQHGRGKEALELFYQMQQE---GVKPDWITFVGALSACA---HAGLIEE 734

Query: 121 SLHSLSLKLSLHDKP 135
            LH        + +P
Sbjct: 735 GLHHFQSMKEFNIEP 749


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 328/557 (58%), Gaps = 6/557 (1%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  A+K+    +  +   L+  Y+K   +  +  +F  IP  +++ W+ LIS ++ S  
Sbjct: 273 IHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQ 332

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCG 138
           +   F   LR    S +PN+ +L+ + + CA++  AFL  G  +H+L +KL    + F G
Sbjct: 333 NEQAFEMFLRMMRSSVVPNEFSLSGVLQACANV--AFLDLGQQIHNLVIKLGYESELFVG 390

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +AL+  Y++ R+ +N+ ++F  +R+ + V +  +IVG+ Q+    D+LSVF +MR++ V 
Sbjct: 391 NALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVL 450

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           ST    S  LRA A  A+++    IH     S  + + IV   LID Y K G + DA +V
Sbjct: 451 STQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKV 510

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E++   + ++WNA+++GYA  G  +  LELF+ +      P++ +F+A+L+   + GL
Sbjct: 511 F-ESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGL 569

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             +       M + ++++P ++HYTC++  +GRAGRL DA +    +P  P   VWRALL
Sbjct: 570 VNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALL 629

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
           S   +H    +     +++++I P D++ YV+++N+ +  G  D+VA +RK M++  V+K
Sbjct: 630 SSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKK 689

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
           E G SW+E+KG+VH F  G   H     I   L  L  +  R GYVP  + +LH+V + E
Sbjct: 690 EVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEE 749

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K   LW HSE+LALA+GL S  P G  +RI+KNLR C DCH  FK IS++V+REIVVRD+
Sbjct: 750 KARMLWVHSERLALAYGL-SMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDI 808

Query: 559 NRYHRFLNGSCTCGDLW 575
           NR+H F  G C+CGD W
Sbjct: 809 NRFHHFDEGICSCGDYW 825



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 189/403 (46%), Gaps = 10/403 (2%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +HA A K    DR+ +  ++LI  YS    +S++  +F+ I   + V+WTA++S +S + 
Sbjct: 172 IHACACKLGH-DRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSEND 230

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
           +  +   +  +       PN   L S+ K    LS A L G  +H  ++K     +P  G
Sbjct: 231 IPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVL-GKGIHGCAVKTLCDTEPHVG 289

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
            AL+  Y++    ++A+ VF+ I   DV+ +  +I  +AQ+ +   +  +F  M  S V 
Sbjct: 290 GALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVV 349

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
              + +SG L+A A +A ++  + IH   +  G +  + VG  L+D Y K   + ++  +
Sbjct: 350 PNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEI 409

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F  +L   N ++WN ++ GY Q G     L +F  +        + +F +VL A  N   
Sbjct: 410 F-RSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTAS 468

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
              + + I  +  +            LI    + G + DA ++  ++  + D   W A++
Sbjct: 469 IKHTVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCDVVSWNAII 526

Query: 379 SFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGVG 419
           S  A+HG+A  A ++  R+   D  P +D  +V + +V    G
Sbjct: 527 SGYALHGRATDALELFNRMNKSDTKP-NDVTFVALLSVCGSTG 568



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 162/349 (46%), Gaps = 12/349 (3%)

Query: 19  RIVHARALKS---SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           R VHAR ++    +Q D    N L+  Y+K   L+ + RLF+ +P  N+VS+  L+  ++
Sbjct: 67  RAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYA 126

Query: 76  ---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
                  +  +F  + R        N   L ++ K   ++    L    +H+ + KL   
Sbjct: 127 LRGGFEEAAGLFRRLQRE---GHEVNHFVLTTILKVLVAMDAPGL-TCCIHACACKLGHD 182

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F GS+L+  YS   +  +A+ VFD I  +D V + AM+  +++N    D+L+ F+ M
Sbjct: 183 RNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKM 242

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R +      + ++  L+AA  L++    + IHG AV +  D    VG  L+D Y K G +
Sbjct: 243 RMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYI 302

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DAR VF E +   + I W+ +++ YAQ        E+F  +      P+E+S   VL A
Sbjct: 303 EDARTVF-EIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQA 361

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
             N       ++ I  + ++   E  L     L+    +   +E++  I
Sbjct: 362 CANVAFLDLGQQ-IHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEI 409


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/548 (36%), Positives = 311/548 (56%), Gaps = 10/548 (1%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSM 87
           +D  +   L++ Y+K   L  + R+F  I   N+V+W A+I+A   H     +L  F ++
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           L+       PN  T  S+   C S S +   G  +H L +K  L       +ALV  +  
Sbjct: 506 LKE---GIKPNSSTFTSILNVCKS-SDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVN 561

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
                +AK +F+++ +RD+V +  +I GF Q+ +   +   F  M+ S +       +G 
Sbjct: 562 CGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGL 621

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A A   A+ + R +H     +  D +V+VGTGLI  Y K G + DA +VF   L   N
Sbjct: 622 LNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF-HKLPKKN 680

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
             +W +M+ GYAQ G     LELF+ ++  G  PD  +F+  L+A  +AGL  E     +
Sbjct: 681 VYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQ 740

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            MK  + +EP +EHY C++   GRAG L +A    + M  EPD+ VW ALL    +H   
Sbjct: 741 SMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNV 799

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
           ++A K  ++ ++++P D+  +VI++N+ +  G W EVA++RKVM DR V K+ G+SWIEV
Sbjct: 800 ELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEV 859

Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
            GKVH F + D+ H +TE+I+ +L  L  E  +LGYVP    +LH+V D EK +AL+YHS
Sbjct: 860 DGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHS 919

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           E+LA+ +GL+   P    + I KNLR+C DCH + K+IS++ +R+I+ RD NR+H F +G
Sbjct: 920 ERLAITYGLLKTPPLTPIV-ISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDG 978

Query: 568 SCTCGDLW 575
            C+CGD W
Sbjct: 979 VCSCGDFW 986



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 186/417 (44%), Gaps = 12/417 (2%)

Query: 12  QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           +N     RI +       Q D  ++N LI  Y+K      + ++F+ +   ++ SW  L+
Sbjct: 124 KNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLL 183

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
             +    L    F    +    S  P++RT  S+   CA   +    G  L++L LK   
Sbjct: 184 GGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDK-GRELYNLILKAGW 242

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F G+AL++ + +     +A KVFD +  RD+V + +MI G A++ R   + ++F  
Sbjct: 243 DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQR 302

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M    V          LRA     A+EQ + +H      G D  + VGT ++  Y K G 
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGS 362

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA  VFD  +   N ++W AM+AG+AQ G        F+ +   G  P+  +F+++L 
Sbjct: 363 MEDALEVFDL-VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILG 421

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A C++  A +  + I+   +           T L+S   + G L+DA R+   +  + + 
Sbjct: 422 A-CSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNV 479

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSG-----VGRW 421
             W A+++    H + D A    + L+   I P + S +  + NV        +G+W
Sbjct: 480 VAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKW 535



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 128/265 (48%), Gaps = 16/265 (6%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VH   +K+  ++D  + N L++ +     L  +  LFN +P  ++VSW  +I+    H  
Sbjct: 536 VHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGK 595

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + ++ + F  M++   +   P++ T   L   CAS   A   G  LH+L  + +      
Sbjct: 596 NQVAFDYF-KMMQESGIK--PDKITFTGLLNACAS-PEALTEGRRLHALITEAAFDCDVL 651

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+ L+  Y++  S ++A +VF ++ +++V  + +MI G+AQ+ R  ++L +F  M+   
Sbjct: 652 VGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEG 711

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV---IVGTG-LIDGYGKAGIV 252
           V        GAL A A    +E+      H   S  + N+   +   G ++D +G+AG++
Sbjct: 712 VKPDWITFVGALSACAHAGLIEEGL----HHFQSMKEFNIEPRMEHYGCMVDLFGRAGLL 767

Query: 253 SDARRVFDENLSVLNSIAWNAMMAG 277
           ++A     +     +S  W A++  
Sbjct: 768 NEAVEFIIKMQVEPDSRVWGALLGA 792



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 118/263 (44%), Gaps = 8/263 (3%)

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           R P     VF +I+  D     A++   ++  +  +++ V   + SS +       S  L
Sbjct: 60  RCPKGRCVVFADIK--DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALL 117

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +   +   +     I+ H   SG+  ++ +   LI+ Y K G    A+++FD+ +   + 
Sbjct: 118 QLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDD-MREKDV 176

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
            +WN ++ GY Q G      +L   +      PD+ +F+++L A  +A    +  + +  
Sbjct: 177 YSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRE-LYN 235

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           + ++   +  L   T LI+   + G + DA ++   +P   D   W ++++  A HG+  
Sbjct: 236 LILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFK 294

Query: 389 MASKMGKRLID--INPYDDSAYV 409
            A  + +R+ +  + P D  A+V
Sbjct: 295 QACNLFQRMEEEGVQP-DKVAFV 316



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           LN    P+   T+ R +HA   +++   D  +   LI+ Y+K   +  + ++F+ +P  N
Sbjct: 622 LNACASPE-ALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKN 680

Query: 64  IVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
           + SWT++I+    H     +L +F  M +       P+  T       CA   HA L   
Sbjct: 681 VYSWTSMITGYAQHGRGKEALELFYQMQQE---GVKPDWITFVGALSACA---HAGLIEE 734

Query: 121 SLHSLSLKLSLHDKP 135
            LH        + +P
Sbjct: 735 GLHHFQSMKEFNIEP 749


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/561 (36%), Positives = 324/561 (57%), Gaps = 11/561 (1%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H+   +S  A D  + N+LI  Y K   +S +  +F+ IP+ ++VSWT LI+ ++ +
Sbjct: 82  RAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQN 141

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +   +L +   MLR     F P+  T  S  K   +     + G  +H+L++K +L + 
Sbjct: 142 DMPAEALGLLPDMLR---ARFRPSGFTFTSFLKAAGACGGRGI-GEQMHALAVKYNLDED 197

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            + GSAL+  Y+R +  D A +VFD +  ++ V + A+I GFA+      +L  FA+M+ 
Sbjct: 198 VYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQR 257

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           +  G+T +  S    A A + A+EQ R +H H + SG      V   ++  Y K+G + D
Sbjct: 258 NGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVD 317

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR+VFD  +   + + WN M+  +AQ G     +  F  +   G   ++ +FL+VLTA  
Sbjct: 318 ARKVFDR-VDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACS 376

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           + GL  E +++ + MK  Y +EP ++HY   +  +GRAG L++A      MP EP AAVW
Sbjct: 377 HGGLVKEGKQYFDMMK-DYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVW 435

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    +H  A +       + +++P D    V++ N+ +  G+WD+ A VRK+MK  
Sbjct: 436 GALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKAT 495

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V+KE   SW+E++  VH+F+A D  H ++E+IY    E+    ++ GYVP  D +L ++
Sbjct: 496 GVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHI 555

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            ++E+   L YHSEK+ALAF L++  P G T+RI+KN+RIC DCH +F+Y+S V +REIV
Sbjct: 556 KEQERETKLQYHSEKIALAFALIN-MPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIV 614

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+H F NGSC+CGD W
Sbjct: 615 VRDTNRFHHFSNGSCSCGDYW 635



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           + A A+   +   R IH H   S L  +  +   LI  Y K G VSDAR VFD  +   +
Sbjct: 69  ITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFD-GIPTRD 127

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W  ++ GYAQ    +  L L   +    F P  ++F + L A    G  G  E+ + 
Sbjct: 128 VVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ-MH 186

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            + V+Y L+  +   + L+    R  +++ A R+   +  + + + W AL++  A  G  
Sbjct: 187 ALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVS-WNALIAGFARKGDG 245

Query: 388 D 388
           +
Sbjct: 246 E 246


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 323/561 (57%), Gaps = 10/561 (1%)

Query: 19   RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
            R +H  ALK+   AD  +   LI  YSKS  +  +  LF +    ++  W A++  +   
Sbjct: 1026 RQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIG 1085

Query: 75   SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            ++   +L +F  + +    S   +Q TLA+  K C  L      G  +H+ ++K      
Sbjct: 1086 NDGKKALELFSLIHKSGEKS---DQITLATAAKACGCLV-LLDQGKQIHAHAIKAGFDSD 1141

Query: 135  PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
                S ++  Y +     NA  VF+ I   D V + +MI G   N     +L ++  MR 
Sbjct: 1142 LHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQ 1201

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            S V    Y  +  ++A++ + A+EQ R +H + +      +  VGT L+D Y K G + D
Sbjct: 1202 SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 1261

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            A R+F + ++V N   WNAM+ G AQ G+    + LF  ++  G  PD  SF+ +L+A  
Sbjct: 1262 AYRLF-KKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 1320

Query: 315  NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            +AGL  E+ +++  M   Y +EP +EHY+CL+ A+GRAG +++A+++   MPF+  A++ 
Sbjct: 1321 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 1380

Query: 375  RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            RALL    I G  +   ++  RL  + P+D +AYV+++N+ +   RWD+V + RK+MK +
Sbjct: 1381 RALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 1440

Query: 435  RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
             V+K+ G SWI+VK  +H+F+  DR H + + IY K+ E+M+     GYVP  + +L +V
Sbjct: 1441 NVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDV 1500

Query: 495  GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
             D EK  +L+YHSEKLA+A+GL+S  P   T+R++KNLR+C DCH + KYIS+V EREIV
Sbjct: 1501 EDEEKERSLYYHSEKLAIAYGLIS-TPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIV 1559

Query: 555  VRDVNRYHRFLNGSCTCGDLW 575
            +RD NR+H F +G C+CGD W
Sbjct: 1560 LRDANRFHHFRDGVCSCGDYW 1580



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 209/422 (49%), Gaps = 15/422 (3%)

Query: 19   RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            + VH  A+KS   +D S+ N+L+  YSK     ++  +FN +   +++SW ++IS+ + S
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 78   PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             L   S+N+F+ +L H  L   P+  TLAS+ + C+SL         +H  +LK      
Sbjct: 984  SLEEESVNLFIDLL-HEGLK--PDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIAD 1040

Query: 135  PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
             F  + L+  YS+    + A+ +F    + D+ C+ AM+ G+   +    +L +F+ +  
Sbjct: 1041 SFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHK 1100

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            S   S    ++ A +A   L  ++Q + IH HA+ +G D ++ V +G++D Y K G + +
Sbjct: 1101 SGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVN 1160

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA-L 313
            A  VF+  +S  + +AW +M++G    G++   L ++H +      PDEY+F  ++ A  
Sbjct: 1161 AGIVFNY-ISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 1219

Query: 314  CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            C   L    +     +K+    +P +   T L+    + G +EDA R+   M    + A+
Sbjct: 1220 CVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIAL 1276

Query: 374  WRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            W A+L   A HG A+ A  + K +    I P D  +++ + +  S  G   E  E    M
Sbjct: 1277 WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEP-DRVSFIGILSACSHAGLTSEAYEYLHSM 1335

Query: 432  KD 433
             +
Sbjct: 1336 PN 1337



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 134/281 (47%), Gaps = 4/281 (1%)

Query: 118  FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
             G  +H +++K  L       ++LV+ YS+      A++VF++++  D++ + +MI   A
Sbjct: 922  LGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 981

Query: 178  QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA-AMEQCRVIHGHAVVSGLDRNV 236
            Q+S   +S+++F D+    +    + ++  LRA + L   +   R IH HA+ +G   + 
Sbjct: 982  QSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADS 1041

Query: 237  IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
             V T LID Y K+G + +A  +F +N   L+   WNAMM GY    D    LELF L+  
Sbjct: 1042 FVATTLIDVYSKSGKMEEAEFLF-QNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHK 1100

Query: 297  RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
             G   D+ + LA     C   +  +  K I    ++   +  L   + ++    + G + 
Sbjct: 1101 SGEKSDQIT-LATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMV 1159

Query: 357  DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            +A  I       PD   W +++S    +G  D A ++  R+
Sbjct: 1160 NA-GIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM 1199



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 9/227 (3%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           L +T  S +H  L G   H+  +        F  + L+  YS+  S  +A++VFD   ER
Sbjct: 627 LLRTAIS-THNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPER 685

Query: 165 DVVCYGAMIVGFA-----QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
           D+V + A++  +A      +    + L +F  +R+S   +T   ++  L+       +  
Sbjct: 686 DLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 745

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
              +HG+A+  GL+ +V V   L++ Y K G + DAR +FD  +   + + WN M+ GY 
Sbjct: 746 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDW-MRERDVVLWNMMLKGYV 804

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           Q G +    +LF      G  PDE+S   +L  +       +  KW+
Sbjct: 805 QLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNW--DEGKWL 849



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 13/205 (6%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           +  HAR + S  A D  + NNL+T YSK   LS + ++F+  P  ++V+W A++ A++  
Sbjct: 641 KCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAAS 700

Query: 76  ------NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
                 N+   L++F  +LR    S    + TLA + K C + S        +H  ++K+
Sbjct: 701 VDSNDGNAQEGLHLF-RLLRASLGS--TTRMTLAPVLKLCLN-SGCLWAAEGVHGYAIKI 756

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
            L    F   ALV+ YS+     +A+ +FD +RERDVV +  M+ G+ Q     ++  +F
Sbjct: 757 GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLF 816

Query: 190 ADMRSSDVGSTMYCVSGALRAAAEL 214
           ++   S +    + V   L   +E+
Sbjct: 817 SEFHRSGLRPDEFSVQLILNGVSEV 841



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 10/198 (5%)

Query: 185  SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
            ++  F +M   ++      +   L A A    +E  + +HG AV SGLD +V V   L++
Sbjct: 888  AIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVN 947

Query: 245  GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
             Y K G    AR VF++ +  L+ I+WN+M++  AQ   +   + LF  L   G  PD +
Sbjct: 948  MYSKMGCAYFAREVFND-MKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHF 1006

Query: 305  SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LEHY--TCLISAMGRAGRLEDAER 360
            +  +VL A C++ + G +   I R    + L+ G   + +  T LI    ++G++E+AE 
Sbjct: 1007 TLASVLRA-CSSLIDGLN---ISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEF 1062

Query: 361  IAMAMPFEPDAAVWRALL 378
            +      + D A W A++
Sbjct: 1063 L-FQNKDDLDLACWNAMM 1079


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/544 (36%), Positives = 327/544 (60%), Gaps = 9/544 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           +YN LI    + + +  S +LF  +   + +SWTA+I+  + + L   ++++F  M R  
Sbjct: 210 MYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREM-RLE 268

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            L    +Q T  S+   C  +  A   G  +H+  ++    D  F GSALV  Y + +S 
Sbjct: 269 NLEM--DQYTFGSVLTACGGVM-ALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSI 325

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
            +A+ VF ++  ++VV + AM+VG+ QN    +++ +F DM+++ +    + +   + + 
Sbjct: 326 KSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSC 385

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A LA++E+    H  A+VSGL   + V   L+  YGK G + D+ R+F E +S ++ ++W
Sbjct: 386 ANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSE-MSYVDEVSW 444

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            A+++GYAQ G  +  L LF  +   GF PD+ +F+ VL+A   AGL  +  +  E M  
Sbjct: 445 TALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIK 504

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            +++ P  +HYTC+I    RAGRLE+A +    MPF PDA  W +LLS    H   ++  
Sbjct: 505 EHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGK 564

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              + L+ + P++ ++Y++++++ +  G+W+EVA +RK M+D+ +RKE G SWI+ K +V
Sbjct: 565 WAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQV 624

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H+F A D+ +  ++ IY++L +L  +  + GYVP  + +LH+V D EK + L +HSEKLA
Sbjct: 625 HIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLA 684

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL+   P G  +R+VKNLR+C DCH + KYIS++ +REI+VRD  R+H F +G C+C
Sbjct: 685 IAFGLIF-IPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSC 743

Query: 572 GDLW 575
           GD W
Sbjct: 744 GDFW 747



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 184/406 (45%), Gaps = 42/406 (10%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           RI +AR +      R++Y  N L+++YSK   L    R+F+ +P+ ++VSW +LISA++ 
Sbjct: 59  RITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAG 118

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                 S+  +  ML +   +     R   S     AS       GL +H   +K     
Sbjct: 119 RGFLLQSVKAYNLMLYNGPFNL---NRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQS 175

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F GS LV  YS+      A++ FDE+ E++VV Y  +I G  + SR+ DS  +F DM+
Sbjct: 176 YVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQ 235

Query: 194 SSD--------VGST-----------------------MYCVSGALRAAAELAAMEQCRV 222
             D         G T                        Y     L A   + A+++ + 
Sbjct: 236 EKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQ 295

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +H + + +    N+ VG+ L+D Y K   +  A  VF   ++  N ++W AM+ GY Q G
Sbjct: 296 VHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVF-RKMNCKNVVSWTAMLVGYGQNG 354

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                +++F  ++  G  PD+++  +V+++  N     E  ++  R  V   L   +   
Sbjct: 355 YSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVS-GLISFITVS 413

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
             L++  G+ G +ED+ R+   M +  D   W AL+S  A  GKA+
Sbjct: 414 NALVTLYGKCGSIEDSHRLFSEMSY-VDEVSWTALVSGYAQFGKAN 458



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 33/286 (11%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDV 197
           + L+  YS+       ++VF  +  RD+V + ++I  +A    L+ S+  +  M  +   
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 +S  L  A++   +     +HGH V  G    V VG+ L+D Y K G+V  AR+
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 258 VFDE----NLSVLN--------------------------SIAWNAMMAGYAQQGDQSTV 287
            FDE    N+ + N                          SI+W AM+AG+ Q G     
Sbjct: 199 AFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREA 258

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           ++LF  + +     D+Y+F +VLTA C   +A +  K +    +R   +  +   + L+ 
Sbjct: 259 IDLFREMRLENLEMDQYTFGSVLTA-CGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVD 317

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
              +   ++ AE +   M  + +   W A+L     +G ++ A K+
Sbjct: 318 MYCKCKSIKSAETVFRKMNCK-NVVSWTAMLVGYGQNGYSEEAVKI 362



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 22  HARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---S 77
           H RAL S      ++ N L+T Y K   +  S RLF+ +   + VSWTAL+S ++    +
Sbjct: 398 HCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKA 457

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
             +L +F SML H    F P++ T   +   C+
Sbjct: 458 NETLRLFESMLAH---GFKPDKVTFIGVLSACS 487



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 8/111 (7%)

Query: 217 MEQCR---VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           ++ CR    IH H + +  +  + +   L+  Y K   ++ ARRVFD+ +   N  +WN 
Sbjct: 22  LKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQ-MPQRNLYSWNT 80

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
           +++ Y++      +  +FH +  R    D  S+ ++++A    G   +S K
Sbjct: 81  LLSSYSKLACLPEMERVFHAMPTR----DMVSWNSLISAYAGRGFLLQSVK 127


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/561 (37%), Positives = 318/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSSQADRSIYN-NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + VH  A K+S  +       LI  Y KS  +  +L++F  +P  +++ W+ +I+ ++ S
Sbjct: 266 KAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQS 325

Query: 78  PLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             S   + +F  M R   L   PNQ TLASL + CASL    L G  +H   +K+ L   
Sbjct: 326 EQSEEAIEMFCRMRRGLVL---PNQFTLASLLQACASLVDLQL-GNQIHCHVVKVGLDMN 381

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  +AL+  Y++    +N+ ++F E      V +  +IVG+ Q      +L +F DM  
Sbjct: 382 VFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLE 441

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V  T    S  LRA A +AA+E    IH  +V +  D+N +VG  LID Y K G + D
Sbjct: 442 CQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKD 501

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR VFD  L   + ++WNAM++GY+  G     L+ F  +      PD+ +F+ +L+A  
Sbjct: 502 ARLVFDM-LREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACS 560

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           NAGL    + + + M   Y +EP  EHYTC++  +GR+G L+ A ++   +PFEP   VW
Sbjct: 561 NAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVW 620

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           RALLS   IH   ++     +R+++I P D++ +V+++N+ +   RW  VA +R  MK +
Sbjct: 621 RALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRK 680

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            +RKE G SWIE +G+VH F  GD  H  T+ I   L  L  +    GYVP +  +L +V
Sbjct: 681 GIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDV 740

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            D +K + LW HSE+LALA+GL+   P    LRI+KNLRIC DCH + K IS++V+R+I+
Sbjct: 741 EDVDKEQRLWVHSERLALAYGLIR-TPSISPLRIIKNLRICADCHAAIKLISKIVQRDII 799

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD+NR+H F  G C+CGD W
Sbjct: 800 IRDMNRFHHFHEGICSCGDYW 820



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 193/408 (47%), Gaps = 14/408 (3%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA   K    +D  +   LI  YS       + ++F+ I   ++VSWT +++ +  +  
Sbjct: 167 VHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENEC 226

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              SL +F  M     + F PN  T AS+ K C  L   F  G ++H  + K S  ++ F
Sbjct: 227 FEESLKLFSRM---RIVGFKPNNFTFASVLKACVGL-EVFNVGKAVHGCAFKTSYLEELF 282

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G  L+  Y +    D+A +VF+E+ + DV+ +  MI  +AQ+ +  +++ +F  MR   
Sbjct: 283 VGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGL 342

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    + ++  L+A A L  ++    IH H V  GLD NV V   L+D Y K G + ++ 
Sbjct: 343 VLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSL 402

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           ++F E+ +  + ++WN ++ GY Q G+    L LF  +        E ++ +VL A   A
Sbjct: 403 QLFSESPNCTD-VSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRAC--A 459

Query: 317 GLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           G+A  E    I  + V+   +        LI    + G ++DA R+   M  E D   W 
Sbjct: 460 GIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDA-RLVFDMLREHDQVSWN 518

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWD 422
           A++S  ++HG    A K  + +++     D   +V + +  S  G  D
Sbjct: 519 AMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLD 566



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 169/382 (44%), Gaps = 5/382 (1%)

Query: 19  RIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + +H   +K         NN++ N Y K + L  + +LF+ +P  N VS+  LI  +S  
Sbjct: 64  KYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQC 123

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                      R        N    +++ K   S   A L G S+H+   KL      F 
Sbjct: 124 LRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKL-GFSVHACVYKLGFDSDAFV 182

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  YS     + A++VFD I  +D+V +  M+  + +N    +SL +F+ MR    
Sbjct: 183 GTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGF 242

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               +  +  L+A   L      + +HG A  +     + VG  LID Y K+G V DA +
Sbjct: 243 KPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQ 302

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF+E +   + I W+ M+A YAQ       +E+F  +      P++++  ++L A C + 
Sbjct: 303 VFEE-MPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQA-CASL 360

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  +    I    V+  L+  +     L+    + GR+E++ ++    P   D + W  +
Sbjct: 361 VDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVS-WNTV 419

Query: 378 LSFSAIHGKADMASKMGKRLID 399
           +      G  + A  + K +++
Sbjct: 420 IVGYVQAGNGEKALILFKDMLE 441


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/556 (36%), Positives = 306/556 (55%), Gaps = 4/556 (0%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H R  +S  Q D ++ N LI  Y +   L  +  +F+ +   +++SWTA+I   ++   
Sbjct: 554  IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 80   SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
             +       +     F P + T +S+ K C S S     G  + +  L          G+
Sbjct: 614  DMKAIELFWQMQNEGFRPVKSTFSSILKVCTS-SACLDEGKKVIAYILNSGYELDTGVGN 672

Query: 140  ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            AL+  YS+  S  +A++VFD++  RD+V +  +I G+AQN     ++     M+  DV  
Sbjct: 673  ALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVP 732

Query: 200  TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
              +     L A +  +A+E+ + +H   V   L  +V VG  LI  Y K G   +A+ VF
Sbjct: 733  NKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVF 792

Query: 260  DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            D N+   N + WNAM+  YAQ G  S  L  F+ +E  G  PD  +F ++L+A  +AGL 
Sbjct: 793  D-NIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLV 851

Query: 320  GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             E  +    M+  Y + P +EHY CL+  +GRA R ++AE +   MPF PDAAVW  LL 
Sbjct: 852  LEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLG 911

Query: 380  FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
               IHG   +A       + +N  + + Y++++NV +  GRWD+VA++R+VM+ R +RKE
Sbjct: 912  ACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKE 971

Query: 440  GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
             GRSWIEV   +H F+A DR H  T +IY +L  L  E E  GY P    +LH++G   +
Sbjct: 972  PGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQ 1031

Query: 500  REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              +L  HSE+LA+A+GL+   P G  +RI KNLRIC DCH + K+IS++V REI+ RD N
Sbjct: 1032 ETSLCTHSERLAIAYGLIK-TPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSN 1090

Query: 560  RYHRFLNGSCTCGDLW 575
            R+H F NG C+C D W
Sbjct: 1091 RFHSFKNGKCSCEDYW 1106



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 200/418 (47%), Gaps = 21/418 (5%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSM 87
           +D  I N LI+ Y++   L  +  LF  +P  +++SW A+I+ ++   +   ++ ++  M
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM 422

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
               +    P + T   L   CA+ S A+  G  +H   L+  +       +AL++ Y R
Sbjct: 423 ---QSEGVKPGRVTFLHLLSACAN-SSAYADGKMIHEDILRSGIKSNGHLANALMNMYRR 478

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             S   A+ VF+  + RDV+ + +MI G AQ+     +  +F +M++ ++       +  
Sbjct: 479 CGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASV 538

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L       A+E  + IHG    SGL  +V +G  LI+ Y + G + DAR VF  +L   +
Sbjct: 539 LSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF-HSLQHRD 597

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W AM+ G A QG+    +ELF  ++  GF P + +F ++L    ++    E +K I 
Sbjct: 598 VMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIA 657

Query: 328 R-MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             +   Y+L+ G+ +   LISA  ++G + DA  +   MP   D   W  +++  A +G 
Sbjct: 658 YILNSGYELDTGVGN--ALISAYSKSGSMTDAREVFDKMP-SRDIVSWNKIIAGYAQNGL 714

Query: 387 ADMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDEVAEV------RKVMKDRRV 436
              A +   ++   D+ P +  ++V + N  S     +E   V      RK+  D RV
Sbjct: 715 GQTAVEFAYQMQEQDVVP-NKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRV 771



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 196/421 (46%), Gaps = 20/421 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H++ +K+  Q D  + N+L++ Y K   L  + ++F  I   ++VS+  ++  ++    
Sbjct: 150 IHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAY 209

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASL---FKTCASLSHAFLFGLSLHSLSLKLSLHD 133
               L +F  M    +    P++ T  +L   F T + L      G  +H L+++  L+ 
Sbjct: 210 VKECLGLFGQM---SSEGISPDKVTYINLLDAFTTPSMLDE----GKRIHKLTVEEGLNS 262

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               G+ALV    R    D+AK+ F    +RDVV Y A+I   AQ+   V++   +  MR
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           S  V          L A +   A+E  ++IH H    G   +V +G  LI  Y + G + 
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            AR +F   +   + I+WNA++AGYA++ D+   + L+  ++  G  P   +FL +L+A 
Sbjct: 383 KARELF-YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSAC 441

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            N+    +  K I    +R  ++        L++   R G L +A+ +        D   
Sbjct: 442 ANSSAYADG-KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVIS 499

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ++++  A HG  + A K+ + + +     D+  +  A+VLSG  +  E  E+ K +  
Sbjct: 500 WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN--ITFASVLSGC-KNPEALELGKQIHG 556

Query: 434 R 434
           R
Sbjct: 557 R 557



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 162/360 (45%), Gaps = 5/360 (1%)

Query: 21  VHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA+ +++        +NL+ N Y K   +  + ++F  +P  +++SW +LIS ++    
Sbjct: 49  IHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGF 108

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
               F          F+PN+ T  S+   C S +     G  +HS  +K      P   +
Sbjct: 109 KKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE-LENGKKIHSQIIKAGYQRDPRVQN 167

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +L+  Y +      A++VF  I  RDVV Y  M+  +AQ + + + L +F  M S  +  
Sbjct: 168 SLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISP 227

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                   L A    + +++ + IH   V  GL+ ++ VGT L+    + G V  A++ F
Sbjct: 228 DKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF 287

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            +  +  + + +NA++A  AQ G      E ++ +   G A +  ++L++L A C+   A
Sbjct: 288 -KGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNA-CSTSKA 345

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E+ K I            ++    LIS   R G L  A  +   MP + D   W A+++
Sbjct: 346 LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIA 404



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 83/147 (56%), Gaps = 6/147 (4%)

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           + + + IH   V + +  ++ +   LI+ Y K   V DA +VF E +   + I+WN++++
Sbjct: 43  LPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE-MPRRDVISWNSLIS 101

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI--ERMKVRYK 334
            YAQQG +    +LF  ++  GF P++ +++++LTA C +    E+ K I  + +K  Y+
Sbjct: 102 CYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTA-CYSPAELENGKKIHSQIIKAGYQ 160

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERI 361
            +P +++   L+S  G+ G L  A ++
Sbjct: 161 RDPRVQN--SLLSMYGKCGDLPRARQV 185


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/544 (36%), Positives = 326/544 (59%), Gaps = 9/544 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           +YN +IT   +S ++  S RLF+ +   + +SWT +I+    + L   ++++F  M R  
Sbjct: 206 MYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDM-RQE 264

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            ++   +Q T  S+   C  L  A   G  +H+L ++   +   F GSALV  Y + RS 
Sbjct: 265 GMAM--DQYTFGSVLTACGGL-RALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSV 321

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A+ VF  +  ++VV + AM+VG+ QN    +++ VF DM+ + +    + +   + + 
Sbjct: 322 RYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSC 381

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A LA++E+    H  A+VSGL   + V   LI  YGK G + D+ ++FDE +S  + ++W
Sbjct: 382 ANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDE-MSFRDEVSW 440

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            A+++GYAQ G  +  ++LF  + ++G  PD  +F+AVL+A   AGL    +++ E M  
Sbjct: 441 TALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLK 500

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            + + P  +HYTC+I   GRAGRLE+A+     MPF PD+  W  LLS   ++G  ++  
Sbjct: 501 DHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGK 560

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              + L++++P + + Y++++++ +  G+W  VA++R+ M+++  RKE G SWI+ K KV
Sbjct: 561 WAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKV 620

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           ++F A D+    ++ IY +L +L  +    GYVP    +LH+V D EK + L +HSEKLA
Sbjct: 621 YIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLA 680

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL+   P G  +R+VKNLR+C DCH + KYIS++ +REI+VRD  R+H F +G+C+C
Sbjct: 681 IAFGLLF-IPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGTCSC 739

Query: 572 GDLW 575
           GD W
Sbjct: 740 GDFW 743



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 205/471 (43%), Gaps = 74/471 (15%)

Query: 16  TDPRIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T  + +H   +KS +  +  +YNNLI  YSK   ++Y+  +F+ +P PN  SW  ++SA+
Sbjct: 22  TQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAY 81

Query: 75  S-----------------------NSPLS-----------LNIFLSMLRHPTLSFLPNQR 100
           S                       NS +S           +  + SM++   L+   N+ 
Sbjct: 82  SKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNL--NRI 139

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T +++    +S     L G  +H   +K       F GS+LV  Y++      A +VFDE
Sbjct: 140 TFSTMLLLVSSQGCVDL-GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDE 198

Query: 161 IRERDVVCYG-------------------------------AMIVGFAQNSRLVDSLSVF 189
           ++ER+VV Y                                 MI G  QN    +++ +F
Sbjct: 199 VQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLF 258

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            DMR   +    Y     L A   L A+++ + IH   + SG + NV VG+ L+D Y K 
Sbjct: 259 RDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKC 318

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
             V  A  VF + ++  N ++W AM+ GY Q G     + +F  ++  G  PD+++  +V
Sbjct: 319 RSVRYAEAVF-KRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSV 377

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           +++  N     E  ++  +  V   L   +     LI+  G+ G +ED+ ++   M F  
Sbjct: 378 ISSCANLASLEEGAQFHCQALVS-GLISFITVSNALITLYGKCGSIEDSNQLFDEMSFR- 435

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
           D   W AL+S  A  GKA+    + +R++ +      A   +A VLS   R
Sbjct: 436 DEVSWTALVSGYAQFGKANETIDLFERML-VQGLKPDAVTFIA-VLSACSR 484



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +   E     Q + +H   + S  +    +   LI+ Y K G ++ AR VFD+ +   NS
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDK-MPQPNS 71

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
            +WN M++ Y++ GD ST+ E+F ++  R
Sbjct: 72  FSWNTMLSAYSKSGDLSTMQEIFSIMPNR 100


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 320/595 (53%), Gaps = 40/595 (6%)

Query: 17  DPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           DP I      + +  + S +N LI+ Y +S     +   F  +P  +IVSW ++IS +S 
Sbjct: 192 DPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQ 251

Query: 77  SPLSLN---IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
              +L    IF  ML  P+L   P+  TLAS+   CA+L      G  +H+  L+     
Sbjct: 252 QGYNLEALVIFSKMLNEPSLK--PDNFTLASILSACANL-EKLNIGKQIHAYILRAETET 308

Query: 134 KPFCGSALVHF---------------------------------YSRFRSPDNAKKVFDE 160
               G+AL+                                   Y++  +   A+++F++
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           +R+RDVV + AMIVG+ QN    D+L +F  M +       Y ++  L  ++ L  +E  
Sbjct: 369 LRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHG 428

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           + IH  A+ +G      V   LI  Y K G ++ A+RVFD        ++W +M+   AQ
Sbjct: 429 KQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQ 488

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G     + LF  +   G  PD  +++ VL+A  + GL  +  K+   M   +++EP L 
Sbjct: 489 HGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLS 548

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           HY C+I   GRAG L++A     +MP EPD   W +LL+   IH  AD+A    +RL+ I
Sbjct: 549 HYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLI 608

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
           +P +  AY+ +ANV S  G+W+  A+ RK+MKDR VRKE G SWI +K +VH F   D +
Sbjct: 609 DPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVI 668

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGA 520
           H + ++IY  +AE+ EE +++G++P  + +LH++ +  K + L YHSEKLA+AFGL++  
Sbjct: 669 HPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLN-T 727

Query: 521 PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           P    LRI+KNLR+C DCH + K+IS++V REI+VRD  R+H F +GSC+C D W
Sbjct: 728 PENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 191/450 (42%), Gaps = 69/450 (15%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N LI+ Y+K      S RL   +P  + VSWTA+I  ++   L  N      +  +   
Sbjct: 79  WNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERV 138

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P+Q T++++  +CA+ +     G  +HS  +KL L       ++L++ Y++   P  AK
Sbjct: 139 PPSQFTVSNVLSSCAA-NQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAK 197

Query: 156 KVFD-------------------------------EIRERDVVCYGAMIVGFAQNSRLVD 184
            VFD                               ++ +RD+V + +MI G++Q    ++
Sbjct: 198 VVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLE 257

Query: 185 SLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIH--------------GHAVV 229
           +L +F+ M     +    + ++  L A A L  +   + IH              G+A++
Sbjct: 258 ALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALI 317

Query: 230 SGLDR-------------------NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
           S   +                   N+I  T L+DGY K G V  AR +F++ L   + +A
Sbjct: 318 SMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK-LRDRDVVA 376

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W AM+ GY Q G  +  LELF L+   G  P+ Y+  A+L+   +  +  E  K I    
Sbjct: 377 WTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTIL-EHGKQIHASA 435

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           ++            LI+   + G +  A+R+      + +   W +++   A HG    A
Sbjct: 436 IKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEA 495

Query: 391 SKMGKRLIDINPYDDS-AYVIVANVLSGVG 419
             + +R++ +    D   YV V +  + VG
Sbjct: 496 INLFERMLSVGMKPDHITYVGVLSACTHVG 525



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 12/305 (3%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  + L+  Y++  + + ++++  E+ + D V + A+IVG+ Q     +++ +FA M S 
Sbjct: 77  FSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V  + + VS  L + A    ++  R IH   V  GL   V V T L++ Y K G    A
Sbjct: 137 RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIA 196

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           + VFD  ++V N   WNA+++ Y Q G        F  +  R    D  S+ ++++    
Sbjct: 197 KVVFDR-MTVKNISTWNALISLYMQSGQFELAASQFEKMPDR----DIVSWNSMISGYSQ 251

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI---AMAMPFEPDAA 372
            G   E+     +M     L+P       ++SA     +L   ++I    +    E   A
Sbjct: 252 QGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGA 311

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           V  AL+S  A  G  ++A    + +++ N   +   +   ++L G  +   V   R++  
Sbjct: 312 VGNALISMYAKSGGVEIA----RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFN 367

Query: 433 DRRVR 437
             R R
Sbjct: 368 KLRDR 372



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           R +H   +  GL   V +   L+  Y K G +  A  VFDE + + ++ +WN +++GYA+
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDE-MPLKSTFSWNTLISGYAK 88

Query: 281 QGD 283
           QG+
Sbjct: 89  QGN 91


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 320/595 (53%), Gaps = 40/595 (6%)

Query: 17  DPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           DP I      + +  + S +N LI+ Y +S     +   F  +P  +IVSW ++IS +S 
Sbjct: 192 DPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQ 251

Query: 77  SPLSLN---IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
              +L    IF  ML  P+L   P+  TLAS+   CA+L      G  +H+  L+     
Sbjct: 252 QGYNLEALAIFSKMLNEPSLK--PDNFTLASILSACANL-EKLNIGKQIHAYILRAETET 308

Query: 134 KPFCGSALVHF---------------------------------YSRFRSPDNAKKVFDE 160
               G+AL+                                   Y++  +   A+++F++
Sbjct: 309 SGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK 368

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           +R+RDVV + AMIVG+ QN    D+L +F  M +       Y ++  L  ++ L  +E  
Sbjct: 369 LRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHG 428

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           + IH  A+ +G      V   LI  Y K G ++ A+RVFD        ++W +M+   AQ
Sbjct: 429 KQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQ 488

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G     + LF  +   G  PD  +++ VL+A  + GL  +  K+   M   +++EP L 
Sbjct: 489 HGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLS 548

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           HY C+I   GRAG L++A     +MP EPD   W +LL+   IH  AD+A    +RL+ I
Sbjct: 549 HYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLI 608

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
           +P +  AY+ +ANV S  G+W+  A+ RK+MKDR VRKE G SWI +K +VH F   D +
Sbjct: 609 DPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVI 668

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGA 520
           H + ++IY  +AE+ EE +++G++P  + +LH++ +  K + L YHSEKLA+AFGL++  
Sbjct: 669 HPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLN-T 727

Query: 521 PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           P    LRI+KNLR+C DCH + K+IS++V REI+VRD  R+H F +GSC+C D W
Sbjct: 728 PENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 192/450 (42%), Gaps = 69/450 (15%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N LI+ Y+K      S RL   +P  + VSWTA+I  ++   L  N      +  +   
Sbjct: 79  WNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERV 138

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P+Q T++++  +CA+ +     G  +HS  +KL L       ++L++ Y++   P  AK
Sbjct: 139 PPSQFTVSNVLSSCAA-NQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAK 197

Query: 156 KVFD-------------------------------EIRERDVVCYGAMIVGFAQNSRLVD 184
            VFD                               ++ +RD+V + +MI G++Q    ++
Sbjct: 198 VVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLE 257

Query: 185 SLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIH--------------GHAVV 229
           +L++F+ M     +    + ++  L A A L  +   + IH              G+A++
Sbjct: 258 ALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALI 317

Query: 230 SGLDR-------------------NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
           S   +                   N+I  T L+DGY K G V  AR +F++ L   + +A
Sbjct: 318 SMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNK-LRDRDVVA 376

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W AM+ GY Q G  +  LELF L+   G  P+ Y+  A+L+   +  +  E  K I    
Sbjct: 377 WTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTIL-EHGKQIHASA 435

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           ++            LI+   + G +  A+R+      + +   W +++   A HG    A
Sbjct: 436 IKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEA 495

Query: 391 SKMGKRLIDINPYDDS-AYVIVANVLSGVG 419
             + +R++ +    D   YV V +  + VG
Sbjct: 496 INLFERMLSVGMKPDHITYVGVLSACTHVG 525



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 12/305 (3%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  + L+  Y++  + + ++++  E+ + D V + A+IVG+ Q     +++ +FA M S 
Sbjct: 77  FSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISE 136

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V  + + VS  L + A    ++  R IH   V  GL   V V T L++ Y K G    A
Sbjct: 137 RVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIA 196

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           + VFD  ++V N   WNA+++ Y Q G        F  +  R    D  S+ ++++    
Sbjct: 197 KVVFDR-MTVKNISTWNALISLYMQSGQFELAASQFEKMPDR----DIVSWNSMISGYSQ 251

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI---AMAMPFEPDAA 372
            G   E+     +M     L+P       ++SA     +L   ++I    +    E   A
Sbjct: 252 QGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGA 311

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           V  AL+S  A  G  ++A    + +++ N   +   +   ++L G  +   V   R++  
Sbjct: 312 VGNALISMYAKSGGVEIA----RLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFN 367

Query: 433 DRRVR 437
             R R
Sbjct: 368 KLRDR 372



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           R +H   +  GL   V +   L+  Y K G +  A  VFDE + + ++ +WN +++GYA+
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDE-MPLKSTFSWNTLISGYAK 88

Query: 281 QGD 283
           QG+
Sbjct: 89  QGN 91


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/573 (36%), Positives = 336/573 (58%), Gaps = 20/573 (3%)

Query: 11  PQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
           P+  S   +I H  A+K++  AD  +   LI  YS++  +  +  LF    + ++V+W A
Sbjct: 437 PEGLSLSKQI-HVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNA 494

Query: 70  LISAHSNSP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF----GLSL 122
           ++S ++ S     +L +F  M +    S   +  TLA++ KTC      FLF    G  +
Sbjct: 495 MMSGYTQSHDGHKTLELFALMHKQGERS---DDFTLATVLKTCG-----FLFAINQGKQV 546

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           H+ ++K       +  S ++  Y +      A+  FD I   D V +  +I G  +N   
Sbjct: 547 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEE 606

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
             +L VF+ MR   V    + ++   +A++ L A+EQ R IH +A+      +  VGT L
Sbjct: 607 ERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSL 666

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           +D Y K G + DA  +F + + ++N  AWNAM+ G AQ G+    L+LF  +E  G  PD
Sbjct: 667 VDMYAKCGSIDDAYCLF-KRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPD 725

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           + +F+ VL+A  ++GL  E+ K+I  M   Y ++P +EHY+CL  A+GRAG +++AE + 
Sbjct: 726 KVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLI 785

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
            +M  E  A+++R LL+   + G  +   ++  +L+++ P D SAYV+++N+ +   +WD
Sbjct: 786 DSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWD 845

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
           E+   R +MK  +V+K+ G SWIEVK K+H+F+  DR + +TE IY K+ +++ + ++ G
Sbjct: 846 EMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEG 905

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           YVP  D  L +V + EK  AL+YHSEKLA+AFGL+S  P    +R++KNLR+C DCH + 
Sbjct: 906 YVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLS-TPPSTPIRVIKNLRVCGDCHNAM 964

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           KYIS+V +REIV+RD NR+HRF +G C+CGD W
Sbjct: 965 KYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 206/431 (47%), Gaps = 25/431 (5%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH  ALK       ++ N+LI  Y K   +  +  +FN++   +++SW ++I+  + S L
Sbjct: 344 VHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDL 403

Query: 80  SLN---IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            +    +F+ +LR       P+  T+ S+ K  +SL         +H  ++K +     F
Sbjct: 404 EVEAVCLFMQLLR---CGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSF 460

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +AL+  YSR R    A+ +F      D+V + AM+ G+ Q+     +L +FA M    
Sbjct: 461 VSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQG 519

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
             S  + ++  L+    L A+ Q + +H +A+ SG D ++ V +G++D Y K G +S A+
Sbjct: 520 ERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ 579

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA-LCN 315
             FD ++ V + +AW  +++G  + G++   L +F  + + G  PDE++   +  A  C 
Sbjct: 580 FAFD-SIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCL 638

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA----ERIAMAMPFEPDA 371
             L    +     +K+    +P +   T L+    + G ++DA    +RI M      + 
Sbjct: 639 TALEQGRQIHANALKLNCTSDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM-----NI 691

Query: 372 AVWRALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDEVAE-VR 428
             W A+L   A HG+   A ++ K++  + I P D   ++ V +  S  G   E  + +R
Sbjct: 692 TAWNAMLVGLAQHGEGKEALQLFKQMESLGIKP-DKVTFIGVLSACSHSGLVSEAYKYIR 750

Query: 429 KVMKDRRVRKE 439
            + +D  ++ E
Sbjct: 751 SMHRDYGIKPE 761



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 147/310 (47%), Gaps = 12/310 (3%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           +Q T   +  T   L  +   G  +H ++LKL L       ++L++ Y + R    A+ V
Sbjct: 321 DQVTFILVLATAVRLD-SLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTV 379

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA-A 216
           F+ + ERD++ + ++I G AQ+   V+++ +F  +    +    Y ++  L+AA+ L   
Sbjct: 380 FNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEG 439

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +   + IH HA+ +    +  V T LID Y +   + +A  +F  N    + +AWNAMM+
Sbjct: 440 LSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRN--NFDLVAWNAMMS 497

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GY Q  D    LELF L+  +G   D+++   VL   C    A    K +    ++   +
Sbjct: 498 GYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKT-CGFLFAINQGKQVHAYAIKSGYD 556

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA----SK 392
             L   + ++    + G +  A+    ++P  PD   W  L+S    +G+ + A    S+
Sbjct: 557 LDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGCIENGEEERALHVFSQ 615

Query: 393 MGKRLIDINP 402
           M  RL+ + P
Sbjct: 616 M--RLMGVLP 623



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 94/196 (47%), Gaps = 6/196 (3%)

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
            + G   H+  L L  + + F  + L+  YS+  S   A++VFD++ ERD+V + +++  
Sbjct: 62  LMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 176 FAQNSRLV-----DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           +AQ+S  V     ++  +F  +R   V ++   +S  L+       +      HG+A   
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKI 181

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           GLD +  V   L++ Y K G V + R +F+E +   + + WN M+  Y + G +   ++L
Sbjct: 182 GLDGDDFVAGALVNIYLKFGKVKEGRVLFEE-MPYRDVVLWNLMLKAYLEMGFKEEAIDL 240

Query: 291 FHLLEMRGFAPDEYSF 306
                  G  P+E + 
Sbjct: 241 SSAFHTSGLHPNEITL 256



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 11/168 (6%)

Query: 19  RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +  HAR L      +R + NNLI+ YSK   L+Y+ R+F+ +P  ++VSW ++++A++ S
Sbjct: 66  KCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQS 125

Query: 78  PLSL-------NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
              +        +   +LR   +    ++ TL+ + K C   S       S H  + K+ 
Sbjct: 126 SEGVVENVKEAFLLFRILRQDVV--YTSRMTLSPMLKLCLH-SGYVCASESFHGYACKIG 182

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           L    F   ALV+ Y +F      + +F+E+  RDVV +  M+  + +
Sbjct: 183 LDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLE 230



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 13/234 (5%)

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
           F + ++A  V  EI  R+ +  G +  G  Q S L   L  F DM  SD+          
Sbjct: 275 FENGNDASAV-SEIISRNKILSGYLHAG--QYSAL---LKCFMDMVESDLECDQVTFILV 328

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L  A  L ++   + +H  A+  GLD  + V   LI+ Y K   +  AR VF+ N+S  +
Sbjct: 329 LATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFN-NMSERD 387

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN--AGLAGESEKW 325
            I+WN+++AG AQ   +   + LF  L   G  PD Y+  +VL A  +   GL+   +  
Sbjct: 388 LISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIH 447

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           +  +K     +  +   T LI A  R   +++AE +     F  D   W A++S
Sbjct: 448 VHAIKTNNVADSFVS--TALIDAYSRNRCMKEAEVLFGRNNF--DLVAWNAMMS 497



 Score = 38.9 bits (89), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 18/164 (10%)

Query: 226 HAVVSGLDRNV--IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ--Q 281
           HA +  L+ N    +   LI  Y K G ++ ARRVFD+ +   + ++WN+++A YAQ  +
Sbjct: 69  HARILALEENPERFLVNNLISMYSKCGSLTYARRVFDK-MPERDLVSWNSILAAYAQSSE 127

Query: 282 GDQSTVLE---LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           G    V E   LF +L          +   +L    ++G    SE +       Y  + G
Sbjct: 128 GVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESF-----HGYACKIG 182

Query: 339 LEH----YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           L+        L++   + G++++   +   MP+  D  +W  +L
Sbjct: 183 LDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLML 225


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/545 (38%), Positives = 321/545 (58%), Gaps = 16/545 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           + N LI  Y K  LL  +  +F+ +P  N+VSWT +ISA+S + L   +L   + MLR  
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE- 60

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGL-SLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
                PN  T +S+ + C  L     F L  LH   +K+ L    F  SAL+  YSR+  
Sbjct: 61  --GVRPNMFTYSSVLRACDGL-----FNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGE 113

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            +NA +VFDE+   D+V + ++I GFAQNS   ++L +F  M+ +   +    ++  LRA
Sbjct: 114 LENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRA 173

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
              LA +E  R +H H  V   D+++I+   L+D Y K G + DA  VF   +   + I+
Sbjct: 174 CTGLALLELGRQVHVH--VLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEK-DVIS 230

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W+ M+AG AQ G     L+LF  +++ G  P+  + + VL A  +AGL  E   +   MK
Sbjct: 231 WSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMK 290

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             + ++PG EHY C+I  +GRAGRL +A  +   M  EPDA  WRALL+   +H   D+A
Sbjct: 291 ELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVA 350

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
               K+++ ++P D   YV+++N+ +   RW++VAEVR+ M +R ++KE G SWIEV  +
Sbjct: 351 IHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQ 410

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
           +H F+ GDR H +  +I  +L +L+ +   +GYVP  + +L ++   + +++L YHSEKL
Sbjct: 411 IHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKL 470

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+ FGL+S  PRG+T+RI KNLRIC DCH   K ++++ +R IV+RD  RYH F +G C+
Sbjct: 471 AIVFGLMS-LPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCS 529

Query: 571 CGDLW 575
           CGD W
Sbjct: 530 CGDFW 534



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 122/250 (48%), Gaps = 12/250 (4%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSM 87
           +D  + + LI  YS+   L  +LR+F+ + + ++V W+++I+    +S+   +L +F  M
Sbjct: 96  SDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRM 155

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYS 146
            R     FL  Q TL S+ + C  L+     G  +H   LK   +D+     +AL+  Y 
Sbjct: 156 KRA---GFLAQQTTLTSVLRACTGLA-LLELGRQVHVHVLK---YDQDLILNNALLDMYC 208

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +  S ++A  VF  + E+DV+ +  MI G AQN    ++L +F  M+   +      + G
Sbjct: 209 KCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVG 268

Query: 207 ALRAAAELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
            L A +    +E+     H    + G+D        +ID  G+AG +S+A  + +E    
Sbjct: 269 VLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECE 328

Query: 266 LNSIAWNAMM 275
            +++ W A++
Sbjct: 329 PDAVTWRALL 338


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/571 (34%), Positives = 329/571 (57%), Gaps = 12/571 (2%)

Query: 13  NTSTDPRI------VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV 65
           N  T+P +      VH    K+  + +  +  +L+  Y+K   +S +  +F+ +P  N+V
Sbjct: 205 NAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVV 264

Query: 66  SWTALISAHSNSPLSLNIFLSML-RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
           +WT LI+ ++     +++ L +L +       PN+ T  S+ + C +   A   G  +H 
Sbjct: 265 TWTLLIAGYAQQG-QVDVALELLEKMQQAEVAPNKITYTSILQGCTT-PLALEHGKKVHR 322

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
             ++     + +  +AL+  Y +      A+K+F ++  RDVV + AM+ G+AQ     +
Sbjct: 323 YIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDE 382

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           ++ +F  M+   +       + AL + +  A +++ + IH   V +G   +V + + L+ 
Sbjct: 383 AIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVS 442

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G + DAR VF++ +S  N +AW AM+ G AQ G     LE F  ++ +G  PD+ 
Sbjct: 443 MYAKCGSMDDARLVFNQ-MSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKV 501

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F +VL+A  + GL  E  K    M + Y ++P +EHY+C +  +GRAG LE+AE + + 
Sbjct: 502 TFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILT 561

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           MPF+P  +VW ALLS   IH   +   +  + ++ ++P DD AYV ++N+ +  GR+++ 
Sbjct: 562 MPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDA 621

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
            +VR+VM+ R V KE G+SWIEV GKVHVF   D+ H   ++IY +L +L E+ +  GYV
Sbjct: 622 EKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYV 681

Query: 485 PVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKY 544
           P    +LH+V + +K + L  HSE+LA+ +GL+   P G  +RIVKNLR+C DCH + K+
Sbjct: 682 PDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMK-TPPGTPIRIVKNLRVCGDCHTASKF 740

Query: 545 ISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IS+VV REI+ RD +R+H F++G C+CGD W
Sbjct: 741 ISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 198/411 (48%), Gaps = 14/411 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA  LKS  Q +R + N L++ Y+K   L+ + R+F+ I   NIVSWTA+I A    
Sbjct: 116 REVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAG 175

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L  +            P++ T  SL     +       G  +H    K  L  +P  
Sbjct: 176 NQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTN-PELLQVGQKVHMEIAKAGLELEPRV 234

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G++LV  Y++      A+ +FD++ E++VV +  +I G+AQ  ++  +L +   M+ ++V
Sbjct: 235 GTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEV 294

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                  +  L+      A+E  + +H + + SG  R + V   LI  Y K G + +AR+
Sbjct: 295 APNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARK 354

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F  +L   + + W AM+ GYAQ G     ++LF  ++ +G  PD+ +F + LT+  +  
Sbjct: 355 LFG-DLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPA 413

Query: 318 LAGESEKWIERM-KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
              E +   +++    Y L+  L+  + L+S   + G ++DA R+      E +   W A
Sbjct: 414 FLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSMDDA-RLVFNQMSERNVVAWTA 470

Query: 377 LLSFSAIHGKADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           +++  A HG+   A     +M K+   I P D   +  V +  + VG  +E
Sbjct: 471 MITGCAQHGRCREALEYFEQMKKQ--GIKP-DKVTFTSVLSACTHVGLVEE 518



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 140/293 (47%), Gaps = 4/293 (1%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           L + CA L  +   G  +H+  LK  +    +  + L+  Y++  S  +A++VFD IR+R
Sbjct: 102 LLQECARL-RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDR 160

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
           ++V + AMI  F   ++ +++   +  M+ +            L A      ++  + +H
Sbjct: 161 NIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVH 220

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
                +GL+    VGT L+  Y K G +S A+ +FD+ L   N + W  ++AGYAQQG  
Sbjct: 221 MEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDK-LPEKNVVTWTLLIAGYAQQGQV 279

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              LEL   ++    AP++ ++ ++L   C   LA E  K + R  ++      +     
Sbjct: 280 DVALELLEKMQQAEVAPNKITYTSILQG-CTTPLALEHGKKVHRYIIQSGYGREIWVVNA 338

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           LI+   + G L++A ++   +P   D   W A+++  A  G  D A  + +R+
Sbjct: 339 LITMYCKCGGLKEARKLFGDLPHR-DVVTWTAMVTGYAQLGFHDEAIDLFRRM 390



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 9/240 (3%)

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADM--RSSDVGSTMYCVSGALRAAAELAAME 218
            R+ D +     +    +  RL ++L +   M  + + V S ++   G L+  A L ++E
Sbjct: 56  FRKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVF--RGLLQECARLRSLE 113

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           Q R +H   + SG+  N  +   L+  Y K G ++DARRVFD  +   N ++W AM+  +
Sbjct: 114 QGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFD-GIRDRNIVSWTAMIEAF 172

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK-WIERMKVRYKLEP 337
                     + +  +++ G  PD+ +F+++L A  N  L    +K  +E  K   +LEP
Sbjct: 173 VAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEP 232

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            +   T L+    + G +  A+ I   +P E +   W  L++  A  G+ D+A ++ +++
Sbjct: 233 RVG--TSLVGMYAKCGDISKAQVIFDKLP-EKNVVTWTLLIAGYAQQGQVDVALELLEKM 289


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/565 (34%), Positives = 336/565 (59%), Gaps = 14/565 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSK---SNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           R  H   +KS    D  +  +L+  Y+K      +  + ++F+ +P  N++SWTA+I+ +
Sbjct: 165 RQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGY 224

Query: 75  SNSP----LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
             S      ++ +FL M++       PN  T +S+ K CA+LS  +L G  +++L +K+ 
Sbjct: 225 VQSGGCDREAIELFLEMVQGQVK---PNHFTFSSVLKACANLSDIWL-GEQVYALVVKMR 280

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           L      G++L+  YSR  + +NA+K FD + E+++V Y  ++  +A++    ++  +F 
Sbjct: 281 LASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFN 340

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           ++  +  G   +  +  L  A+ + A+ +   IH   + SG   N+ +   LI  Y + G
Sbjct: 341 EIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCG 400

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A +VF+E +   N I+W +M+ G+A+ G  +  LE FH +   G +P+E +++AVL
Sbjct: 401 NIEAAFQVFNE-MGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVL 459

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  + GL  E  K  + MKV + + P +EHY C++  +GR+G LE+A  +  +MPF+ D
Sbjct: 460 SACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKAD 519

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A V R  L    +HG  D+     + +++ +P+D +AY++++N+ +  G+W+EVAE+RK 
Sbjct: 520 ALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKK 579

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK+R + KE G SWIEV+ KVH F  GD  H + ++IY +L +L  + + LGY+P  D +
Sbjct: 580 MKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFV 639

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           LH+V + +K + L+ HSEK+A+A+G +S +   + +R+ KNLR+C DCH +FKY S V  
Sbjct: 640 LHDVEEEQKEQYLFQHSEKIAVAYGFISTST-SRPIRVFKNLRVCGDCHTAFKYFSIVRR 698

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           +EIV+RD NR+H F +G+C+C D W
Sbjct: 699 KEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 199/443 (44%), Gaps = 38/443 (8%)

Query: 63  NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
           ++VSW+ALIS ++N+  +     +        F PN+     +F+ C++  +  L G  +
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISL-GKII 64

Query: 123 HSLSLKLSLHDKPFC-GSALVHFYSRFRSP-DNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
               LK    +   C G AL+  + +     ++A KVFD + +R+VV +  MI  F Q  
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              D++ +F DM  S      + +SG + A AE+  +   R  H   + SGLD +V VG 
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGC 184

Query: 241 GLIDGYGKA---GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-QSTVLELFHLLEM 296
            L+D Y K    G V DAR+VFD  + V N ++W A++ GY Q G      +ELF  +  
Sbjct: 185 SLVDMYAKCVADGSVDDARKVFDR-MPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC----LISAMGRA 352
               P+ ++F +VL A  N      S+ W+        ++  L    C    LIS   R 
Sbjct: 244 GQVKPNHFTFSSVLKACANL-----SDIWLGEQVYALVVKMRLASINCVGNSLISMYSRC 298

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL----IDINPYDDSAY 408
           G +E+A R A  + FE +   +  +++  A    ++ A ++   +      +N +  ++ 
Sbjct: 299 GNMENA-RKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASL 357

Query: 409 VIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIY 468
           +  A+ +  +G+ +++          R+ K G       K  +H+  A   M+ R  +I 
Sbjct: 358 LSGASSIGAIGKGEQI--------HSRILKSG------FKSNLHICNALISMYSRCGNIE 403

Query: 469 TKLAELMEECERLGYVPVWDEML 491
                  E  +  G V  W  M+
Sbjct: 404 AAFQVFNEMGD--GNVISWTSMI 424



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 206/426 (48%), Gaps = 20/426 (4%)

Query: 19  RIVHARALKSS--QADRSIYNNLITNYSKSNL-LSYSLRLFNHIPSPNIVSWTALISAHS 75
           +I+    LK+   ++D  +   LI  + K N  L  + ++F+ +P  N+V+WT +I+   
Sbjct: 62  KIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQ 121

Query: 76  NSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
               S   +++FL M+      ++P++ TL+ +   CA +    L G   H L +K  L 
Sbjct: 122 QLGFSRDAVDLFLDMVLS---GYVPDRFTLSGVVSACAEMGLLSL-GRQFHCLVMKSGLD 177

Query: 133 DKPFCGSALVHFYSRF---RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL-VDSLSV 188
                G +LV  Y++     S D+A+KVFD +   +V+ + A+I G+ Q+     +++ +
Sbjct: 178 LDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIEL 237

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           F +M    V    +  S  L+A A L+ +     ++   V   L     VG  LI  Y +
Sbjct: 238 FLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSR 297

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G + +AR+ FD  L   N +++N ++  YA+  +     ELF+ +E  G   + ++F +
Sbjct: 298 CGNMENARKAFDV-LFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFAS 356

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           +L+   + G  G+ E+   R+ ++   +  L     LIS   R G +E A ++   M  +
Sbjct: 357 LLSGASSIGAIGKGEQIHSRI-LKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-D 414

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAE 426
            +   W ++++  A HG A  A +   ++++  ++P ++  Y+ V +  S VG   E  +
Sbjct: 415 GNVISWTSMITGFAKHGFATRALETFHKMLEAGVSP-NEVTYIAVLSACSHVGLISEGLK 473

Query: 427 VRKVMK 432
             K MK
Sbjct: 474 HFKSMK 479



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 107/235 (45%), Gaps = 16/235 (6%)

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +RD+V + A+I  +A N +  +++S F DM         YC +G  RA +    +   ++
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 223 IHGHAVVSG-LDRNVIVGTGLIDGYGKA-GIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           I G  + +G  + +V VG  LID + K  G +  A +VFD  +   N + W  M+  + Q
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDR-MPDRNVVTWTLMITRFQQ 122

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G     ++LF  + + G+ PD ++   V++A    GL       + R      ++ GL+
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLS-----LGRQFHCLVMKSGLD 177

Query: 341 HYTC----LISAMGRA---GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
              C    L+    +    G ++DA ++   MP   +   W A+++     G  D
Sbjct: 178 LDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAIITGYVQSGGCD 231


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/562 (37%), Positives = 328/562 (58%), Gaps = 14/562 (2%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           VHA  +K+      +Y    LI  Y+K   L  +  +F+ +   N+VSWTA+IS +S   
Sbjct: 32  VHAHMIKTCYLP-PVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRG 90

Query: 79  LS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +   L++F+ MLR  T    PN+ T A++  +C   S  F  G  +HS   K +  +  
Sbjct: 91  FASEALHLFVQMLRSDTE---PNEFTFATVLSSCTGFS-GFELGRQIHSHIFKRNYENHI 146

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F GS+L+  Y++      A+ VF+ + ERDVV   A+I G+AQ     ++L +F  ++  
Sbjct: 147 FVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQRE 206

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            + S     +  L A + LAA++  + +H H +   L   V++   LID Y K G ++ A
Sbjct: 207 GMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYA 266

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALC 314
           R++F+ N+ V   I+WNAM+ GY++ G    V++LF L+ E     PD  +FLAVL+   
Sbjct: 267 RKIFN-NMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCS 325

Query: 315 NAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           + GL  +  E + E M    ++E G+EHY C+I  +GRAGR+E+A  +   MPFEP AA+
Sbjct: 326 HGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAI 385

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W +LL    +H   ++   +G RL++I P +   YVI++N+ +  GRW++V  VR++M +
Sbjct: 386 WGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMME 445

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           + V KE GRSWIE+   +H F A DR H R E+++ K+ EL+ + +  GYVP    +L++
Sbjct: 446 KAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYD 505

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + +K + L  HSEKLALAFGL+S    G  LR++KNLRIC DCH   K++S+V  R++
Sbjct: 506 VDEEQKEKILLGHSEKLALAFGLIS-TSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQV 564

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
            +RD NR+H    G C+CGD W
Sbjct: 565 SIRDKNRFHHVAGGICSCGDYW 586



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 146/300 (48%), Gaps = 6/300 (2%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H+  +K       +  + L+  Y++      A+ VFDE+RER+VV + AMI G++Q
Sbjct: 29  GQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQ 88

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
                ++L +F  M  SD     +  +  L +    +  E  R IH H      + ++ V
Sbjct: 89  RGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFV 148

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           G+ L+D Y KAG + +AR VF E L   + ++  A+++GYAQ G     LELF  L+  G
Sbjct: 149 GSSLLDMYAKAGRIHEARGVF-ECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREG 207

Query: 299 FAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
            + +  ++ ++LTAL  +GLA  +  K +    +R +L   +     LI    + G L  
Sbjct: 208 MSSNYVTYASLLTAL--SGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNY 265

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           A +I   MP     + W A+L   + HGK     K+ K + + N     +   +A VLSG
Sbjct: 266 ARKIFNNMPVRTVIS-WNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLA-VLSG 323



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 5/203 (2%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+ + + +H H + +     V + T LI  Y K   +  AR VFDE +   N ++W AM+
Sbjct: 25  AVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDE-MRERNVVSWTAMI 83

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           +GY+Q+G  S  L LF  +      P+E++F  VL++ C      E  + I     +   
Sbjct: 84  SGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS-CTGFSGFELGRQIHSHIFKRNY 142

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           E  +   + L+    +AGR+ +A  +   +P E D     A++S  A  G  + A ++  
Sbjct: 143 ENHIFVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISGYAQLGLDEEALELFC 201

Query: 396 RLIDINPYDDSAYVIVANVLSGV 418
           RL        S YV  A++L+ +
Sbjct: 202 RLQREGM--SSNYVTYASLLTAL 222


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 324/561 (57%), Gaps = 10/561 (1%)

Query: 19   RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            R +H+R +K     D S+ N LI+ Y++   +  +  LFN +   +I+SWTA+I   + S
Sbjct: 466  REIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKS 525

Query: 78   PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             L   +L +F  M +       PN+ T  S+   C+S + A  +G  +H   ++  L   
Sbjct: 526  GLGAEALAVFQDMQQ---AGLKPNRVTYTSILNACSSPA-ALDWGRRIHQQVIEAGLATD 581

Query: 135  PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
                + LV+ YS   S  +A++VFD + +RD+V Y AMI G+A ++   ++L +F  ++ 
Sbjct: 582  AHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE 641

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
              +          L A A   ++E  + IH   +  G   +  +G  L+  Y K G  SD
Sbjct: 642  EGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSD 701

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            A  VFD+ +   N I+WNA++ G AQ G    VL+LF  ++M G  PD  +F+++L+A  
Sbjct: 702  ALLVFDKMMK-RNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACS 760

Query: 315  NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            +AGL  E  ++   M   + + P +EHY C++  +GRAG+L++ E +   MPF+ +  +W
Sbjct: 761  HAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIW 820

Query: 375  RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
             ALL    IHG   +A +  +  + ++P + + YV ++++ +  G WD  A++RK+M+ R
Sbjct: 821  GALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQR 880

Query: 435  RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
             V KE GRSWIEV  K+H F+A DR H  +E IY +L +L    +  GYVP    ++H+V
Sbjct: 881  GVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDV 940

Query: 495  GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
             + EK  A+ +HSE+LA+A+GL+S  P G  +RI KNLR+C DCH + K+I+++V+REIV
Sbjct: 941  DEGEKENAVCHHSERLAIAYGLISTLP-GTPIRIFKNLRVCPDCHTATKFITKIVDREIV 999

Query: 555  VRDVNRYHRFLNGSCTCGDLW 575
             RDVNR+H F +G C+CGD W
Sbjct: 1000 ARDVNRFHHFKDGVCSCGDYW 1020



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 183/383 (47%), Gaps = 11/383 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           + VH+  L +  ++D ++   L+  Y+K        ++F  + + ++++W  +I      
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 424

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            N   +  I+  M R      +PN+ T   L   C + + A  +G  +HS  +K      
Sbjct: 425 GNWEEASEIYHQMQRE---GMMPNKITYVILLNACVNPT-ALHWGREIHSRVVKDGFMFD 480

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +AL+  Y+R  S  +A+ +F+++  +D++ + AMI G A++    ++L+VF DM+ 
Sbjct: 481 ISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQ 540

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + +       +  L A +  AA++  R IH   + +GL  +  V   L++ Y   G V D
Sbjct: 541 AGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKD 600

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR+VFD  ++  + +A+NAM+ GYA        L+LF  L+  G  PD+ +++ +L A  
Sbjct: 601 ARQVFDR-MTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 659

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           N+G + E  K I  + ++            L+S   + G   DA  +   M  + +   W
Sbjct: 660 NSG-SLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISW 717

Query: 375 RALLSFSAIHGKADMASKMGKRL 397
            A++   A HG+     ++ +R+
Sbjct: 718 NAIIGGCAQHGRGQDVLQLFERM 740



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 158/359 (44%), Gaps = 12/359 (3%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHI--PSPNIVSWTALISAHSNSPL---SLNIFLS 86
           D+   N LI  Y +   +  + +++N +      + SW A++  +        +L +   
Sbjct: 175 DQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLRE 234

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M +H        + T   L  +C S S A   G  +H  ++K  L       + +++ Y+
Sbjct: 235 MQQH---GLALGRATTMRLLSSCKSPS-ALECGREIHVEAMKARLLFDVNVANCILNMYA 290

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +  S   A++VFD++  + VV +  +I G+A       +  +F  M+   V         
Sbjct: 291 KCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYIN 350

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A +  AA++  + +H H + +G + ++ VGT L+  Y K G   D R+VF E L   
Sbjct: 351 VLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVF-EKLVNR 409

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + IAWN M+ G A+ G+     E++H ++  G  P++ +++ +L A  N   A    + I
Sbjct: 410 DLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNP-TALHWGREI 468

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
               V+      +     LIS   R G ++DA R+        D   W A++   A  G
Sbjct: 469 HSRVVKDGFMFDISVQNALISMYARCGSIKDA-RLLFNKMVRKDIISWTAMIGGLAKSG 526


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/496 (39%), Positives = 302/496 (60%), Gaps = 8/496 (1%)

Query: 83  IFL-SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSAL 141
           IF+ S + H ++S  PN+ T   L + C  + +A   G  +H+  LK       F  + L
Sbjct: 79  IFMYSRMLHKSVS--PNKFTYPPLIRACC-IDYAIEEGKQIHAHVLKFGFGADGFSLNNL 135

Query: 142 VHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +H Y  F+S + A++VFD +  R+R+ V + AMI  + Q++RL ++ ++F  MR  +V  
Sbjct: 136 IHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL 195

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             +  +  L A   L A+EQ + IHG+   SG++ +  + T +ID Y K G +  A  VF
Sbjct: 196 DKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVF 255

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +E L      +WN M+ G A  G     +ELF  +E    APD  +F+ VL+A  ++GL 
Sbjct: 256 NE-LPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLV 314

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E + + + M     L+PG+EH+ C++  +GRAG LE+A ++   MP  PDA V  AL+ 
Sbjct: 315 EEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVG 374

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IHG  ++  ++GK++I++ P++   YV++AN+ +  GRW++VA+VRK+M DR V+K 
Sbjct: 375 ACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKA 434

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S IE +  V  F+AG R H + ++IY KL E++E    +GYVP  D +LH++ + EK
Sbjct: 435 PGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEK 494

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              L+YHSEKLA+AFGL+   P G+TLRI KNLRICRDCH++ K IS+V +REI++RD N
Sbjct: 495 ENPLYYHSEKLAIAFGLLKTKP-GETLRISKNLRICRDCHQASKLISKVYDREIIIRDRN 553

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F  G C+C D W
Sbjct: 554 RFHHFRMGGCSCKDYW 569



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 12/281 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPS--PNIVSWTALISAHSNS 77
           +HA  LK    AD    NNLI  Y     L  + R+F+++P    N VSW A+I+A+  S
Sbjct: 116 IHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQS 175

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                 F    R    + + ++   AS+   C  L  A   G  +H    K  +      
Sbjct: 176 NRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLG-ALEQGKWIHGYIEKSGIELDSKL 234

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + ++  Y +    + A +VF+E+ ++ +  +  MI G A + +   ++ +F +M    V
Sbjct: 235 ATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMV 294

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAV-VSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                     L A A    +E+ +    +   V GL   +     ++D  G+AG++ +AR
Sbjct: 295 APDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEAR 354

Query: 257 RVFDE-----NLSVLNSIAWNAMMAGYAQQGDQ--STVLEL 290
           ++ +E     +  VL ++     + G  + G+Q    V+EL
Sbjct: 355 KLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIEL 395


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/565 (36%), Positives = 319/565 (56%), Gaps = 15/565 (2%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D R +H     S  + D  + N+LI  Y K   +  + ++F+ +   ++VSWT+LI+ ++
Sbjct: 69  DARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYA 128

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            + +   ++ +   ML+     F PN  T ASL K   + + + + G  +H+L++K   H
Sbjct: 129 QNDMPAEAIGLLPGMLKG---RFKPNGFTFASLLKAAGAYADSGIGG-QIHALAVKCDWH 184

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           +  + GSAL+  Y+R    D A  VFD++  ++ V + A+I GFA+      +L VFA+M
Sbjct: 185 EDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEM 244

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           + +   +T +  S      A + A+EQ + +H H V S       VG  ++D Y K+G +
Sbjct: 245 QRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSM 304

Query: 253 SDARRVFDENLSVLNS--IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            DAR+VF+    VLN   + WN+M+  +AQ G     +  F  +   G   ++ +FL +L
Sbjct: 305 IDARKVFER---VLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCIL 361

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           TA  + GL  E + + + +K  Y LEP +EHY  ++  +GRAG L  A      MP EP 
Sbjct: 362 TACSHGGLVKEGKHYFDMIK-EYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPT 420

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           AAVW ALL+   +H  A +       +  ++P D    V++ N+ +  G WD  A VRK+
Sbjct: 421 AAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKM 480

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK   V+KE   SW+E+   VH+F+A D  H R E+IY    E+  +  + GYVP  D +
Sbjct: 481 MKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYV 540

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L +V ++E+   L YHSEK+ALAF L+   P G T+RI+KN+RIC DCH +FKYIS+V E
Sbjct: 541 LLHVDEQEREANLQYHSEKIALAFALIQ-MPAGATIRIMKNIRICGDCHSAFKYISKVFE 599

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REIVVRD NR+H F NGSC+CGD W
Sbjct: 600 REIVVRDTNRFHHFSNGSCSCGDYW 624



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 92/202 (45%), Gaps = 9/202 (4%)

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           + S ++  T       + A A+   ++  R IHGH   S  + +  +   LI  Y K G 
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGS 101

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           V +A +VFD+ +   + ++W +++AGYAQ    +  + L   +    F P+ ++F ++L 
Sbjct: 102 VVEAHKVFDK-MRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLK 160

Query: 312 ---ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
              A  ++G+ G+    I  + V+      +   + L+    R G+++ A  +   +   
Sbjct: 161 AAGAYADSGIGGQ----IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-S 215

Query: 369 PDAAVWRALLSFSAIHGKADMA 390
            +   W AL+S  A  G  + A
Sbjct: 216 KNGVSWNALISGFARKGDGETA 237


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/560 (37%), Positives = 326/560 (58%), Gaps = 11/560 (1%)

Query: 21  VHARALKSSQADRSIYNN--LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           VH  ALK    DR +Y    L+  Y+KS  ++ + + F  +P  +++ W+ +IS ++ S 
Sbjct: 227 VHGCALKVCY-DRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSD 285

Query: 79  LS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            S   L +F  M +   +  +PN  T AS+ + CASL    L G  +HS  LK+ L    
Sbjct: 286 KSKEALELFCRMRQSSVV--VPNNFTFASVLQACASLVLLNL-GNQIHSCVLKVGLDSNV 342

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  +AL+  Y++    +N+ K+F    E++ V +  +IVG+ Q      +L++F++M   
Sbjct: 343 FVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGL 402

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           D+  T    S  LRA+A L A+E  R IH   + +  +++ +V   LID Y K G + DA
Sbjct: 403 DIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDA 462

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R  FD+ +   + ++WNA++ GY+  G     L LF +++     P++ +F+ VL+A  N
Sbjct: 463 RLTFDK-MDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSN 521

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  +     + M   Y +EP +EHYTC++  +GR+G+ ++A ++   +PF+P   VWR
Sbjct: 522 AGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWR 581

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ALL    IH   D+     +R++++ P DD+ +V+++N+ +   RWD VA VRK MK ++
Sbjct: 582 ALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKK 641

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           V+KE G SW+E +G VH F  GD  H   + I+  L  L ++    GYVP    +L +V 
Sbjct: 642 VKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVE 701

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           D EK   LW HSE+LALAFGL+   P G ++RI+KNLRIC DCH   K +S++V+REIV+
Sbjct: 702 DDEKERLLWMHSERLALAFGLIQ-IPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVI 760

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD+NR+H F  G C+CGD W
Sbjct: 761 RDINRFHHFRQGVCSCGDYW 780



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 179/393 (45%), Gaps = 11/393 (2%)

Query: 17  DP---RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           DP   + +H   LK  +  D    N L+  Y     L  + +LF+ +P  N VS+  L  
Sbjct: 18  DPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQ 77

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
             S S         +LR     +  NQ    +L K   S+  A    LS+H+   KL   
Sbjct: 78  GFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADT-CLSVHAYVYKLGHQ 136

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F G+AL+  YS   + D A++VFD I  +D+V +  M+  +A+N    DSL +F  M
Sbjct: 137 ADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQM 196

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R        + +S AL++   L A +  + +HG A+    DR++ VG  L++ Y K+G +
Sbjct: 197 RIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEI 256

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLT 311
           ++A++ F+E +   + I W+ M++ YAQ       LELF  + +     P+ ++F +VL 
Sbjct: 257 AEAQQFFEE-MPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQ 315

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  +  L     + I    ++  L+  +     L+    + G +E++ ++      E + 
Sbjct: 316 ACASLVLLNLGNQ-IHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGST-EKNE 373

Query: 372 AVWRALLSFSAIHGKADMASKMGKRL--IDINP 402
             W  ++      G  + A  +   +  +DI P
Sbjct: 374 VAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQP 406


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/607 (34%), Positives = 331/607 (54%), Gaps = 39/607 (6%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           LN    P+  +   RI    + +  + D  + N LIT Y K N +  +  +F+ +   ++
Sbjct: 265 LNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDV 324

Query: 65  VSWTALISAHSNSPL----SLN-IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119
           +SW+A+I+ ++ S      S++ +F  + R       PN+ T  S+ + C +   A   G
Sbjct: 325 ISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHG-ALEQG 383

Query: 120 LSLHS------LSLKLSLHDKPF-----CGS--------------------ALVHFYSRF 148
             +H+        L  SL    F     CGS                    + +  Y + 
Sbjct: 384 RQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKC 443

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               +A+KVF E+  R+VV +  MI G+AQN  +V    + + M++         V   L
Sbjct: 444 GDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITIL 503

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A   LA +E+ +++H  AV  GL+ + +V T LI  Y K G V++AR VFD+ +S  ++
Sbjct: 504 EACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDK-MSNRDT 562

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           +AWNAM+AGY Q GD    ++LF  +     +P+E +  AV++A   AGL  E  +    
Sbjct: 563 VAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRM 622

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M+  +K+ P  +HY C++  +GRAGRL++AE    +MP EPD +VW ALL     H    
Sbjct: 623 MQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQ 682

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +A +    ++++ P   S Y+ ++N+ +  GRWD+  +VR+VM DR ++K+ G S IE+ 
Sbjct: 683 LAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEID 742

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
           G++H F+A D  H   + I+ +L  L +E +  GY P    +LH+V D +K +AL +HSE
Sbjct: 743 GRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSE 802

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           KLA+A+GL+   P G  +RI+KNLR+C DCH + K+IS++ +REIV RD NR+H F NG+
Sbjct: 803 KLAIAYGLLK-TPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGT 861

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 862 CSCGDFW 868



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 195/386 (50%), Gaps = 16/386 (4%)

Query: 17  DPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           D ++VH + L     +  IY  N+LI  YSK   ++ + ++F  +   ++V+W+++I+A+
Sbjct: 74  DGKMVH-KQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAY 132

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           + +      F +  R    +  PN+ T  S+ K C + S     G  +H++   + +   
Sbjct: 133 AGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYS-ILEKGRKIHTIVKAMGMETD 191

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +AL+  YS+      A +VF ++ ER+VV + A+I   AQ+ +L ++  ++  M  
Sbjct: 192 VAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQ 251

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + +          L +     A+ + R IH H    GL+ ++IV   LI  Y K   V +
Sbjct: 252 AGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQE 311

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQG--DQSTVLELFHLLE-MR--GFAPDEYSFLAV 309
           AR +FD  +S  + I+W+AM+AGYAQ G  D+ ++ E+F LLE MR  G  P++ +F+++
Sbjct: 312 AREIFDR-MSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSI 370

Query: 310 LTALCNAGLAGESEKWI--ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           L A C A  A E  + I  E  KV ++L+  L+  T + +   + G + +AE++   M  
Sbjct: 371 LRA-CTAHGALEQGRQIHAELSKVGFELDRSLQ--TAIFNMYAKCGSIYEAEQVFSKMA- 426

Query: 368 EPDAAVWRALLSFSAIHGKADMASKM 393
             +   W + LS     G    A K+
Sbjct: 427 NKNVVAWTSFLSMYIKCGDLSSAEKV 452



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 4/297 (1%)

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
            L N  T   + + CA  +  F  G  +H    +L +    + G++L++FYS+F    +A
Sbjct: 52  LLVNSNTYGCVIEHCAK-ARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASA 110

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           ++VF  +  RDVV + +MI  +A N+    +   F  M  +++          L+A    
Sbjct: 111 EQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNY 170

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           + +E+ R IH      G++ +V V T LI  Y K G +S A  VF   ++  N ++W A+
Sbjct: 171 SILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVF-HKMTERNVVSWTAI 229

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           +   AQ    +   EL+  +   G +P+  +F+++L + CN   A    + I        
Sbjct: 230 IQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNS-CNTPEALNRGRRIHSHISERG 288

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           LE  +     LI+   +   +++A  I   M  + D   W A+++  A  G  D  S
Sbjct: 289 LETDMIVANALITMYCKCNSVQEAREIFDRMS-KRDVISWSAMIAGYAQSGYKDKES 344


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/563 (37%), Positives = 311/563 (55%), Gaps = 11/563 (1%)

Query: 19  RIVHARALKS--SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH-S 75
           R  HA+ +K+  +     IYN+L+  YSK +  + +  L +  P+ ++V+WTALI+    
Sbjct: 26  RAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQ 85

Query: 76  NSPLSLNIF-LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           N   +  +F  S +R  ++   PN  T    FK   SL    L G  +H+L++K      
Sbjct: 86  NGRFTSALFHFSNMRRDSIQ--PNDFTFPCAFKASGSLRSP-LVGKQVHALAVKAGQISD 142

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F G +    YS+    + A+K+FDE+ ER++  + A +       R  D+L+ F + R 
Sbjct: 143 VFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARK 202

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +  T + VS  L A A L+ +E  + +H  AV + +  N+ VG+ L+D YGK G + D
Sbjct: 203 EGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIED 262

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG--FAPDEYSFLAVLTA 312
           A R FDE +   N + WNAM+ GYA QG     + LF  +       AP+  +F+ VL+A
Sbjct: 263 AERAFDE-MPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSA 321

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
              AG      +  E M+ RY +EPG EHY C++  +GRAG +E A +    MP  P  +
Sbjct: 322 CSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVS 381

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALL  S + GK+++       L +++P D   +V+++N+ +  GRW+E   VRK MK
Sbjct: 382 VWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMK 441

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           D  ++K  G SWI     VHVF A D  HER  +I   LA+L  E E  GY+P     L 
Sbjct: 442 DVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALF 501

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + EK   +WYHSEK+ALAFGL+S  P G  +RI KNLRIC DCH + K+IS +V RE
Sbjct: 502 DLEEEEKAMEVWYHSEKIALAFGLIS-IPAGVPIRITKNLRICGDCHSAIKFISGIVGRE 560

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD N +HRF +  C+C D W
Sbjct: 561 IIVRDNNLFHRFRDNQCSCRDYW 583


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/564 (37%), Positives = 322/564 (57%), Gaps = 13/564 (2%)

Query: 17  DPRIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           D R +HA  L SS+   D  + N+LI  Y K   +  +  +F+ +   ++VSWT+LI+ +
Sbjct: 69  DARKIHAH-LGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGY 127

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + + +   ++ +   ML+     F PN  T ASL K   + + +   G  +H+L++K   
Sbjct: 128 AQNDMPVEAIGLLPGMLKG---RFKPNGFTFASLLKAAGAYADSGT-GRQIHALAVKCGW 183

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           H+  + GSAL+  Y+R    D A  VFD++  ++ V + A+I GFA+      +L  FA+
Sbjct: 184 HEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAE 243

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M  +   +T +  S    + A L A+EQ + +H H + S       VG  L+D Y K+G 
Sbjct: 244 MLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGS 303

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DAR+VFD  +   + + WN+M+  +AQ G     +  F  +   G   ++ +FL +LT
Sbjct: 304 MIDARKVFDR-VDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILT 362

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  E +++ E MK  Y LEP ++HY  +++ +GRAG L  A      MP EP A
Sbjct: 363 ACSHGGLVKEGKRYFEMMK-EYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTA 421

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           AVW ALL+   +H  A +       + +++P D    V++ N+ +  G+WD  A VR +M
Sbjct: 422 AVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMM 481

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           K   V+KE   SW+E++  VH+F+A D  H + E+IY    E+ ++  + GYVP  D +L
Sbjct: 482 KTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVL 541

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            +V D+EK   L YHSEKLALAF L+   P G T+RI+KN+RIC DCH +FKYIS+V  R
Sbjct: 542 LHVDDQEKEANLQYHSEKLALAFALIE-MPAGATIRIMKNIRICGDCHSAFKYISKVFGR 600

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EIVVRD NR+H F +GSC+CGD W
Sbjct: 601 EIVVRDTNRFHHFSSGSCSCGDYW 624



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 3/183 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           + A A+   +E  R IH H   S    +  +   LI  Y K   V DAR VFD+ +   +
Sbjct: 58  ITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQ-MRRKD 116

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W +++AGYAQ       + L   +    F P+ ++F ++L A      +G   + I 
Sbjct: 117 MVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ-IH 175

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            + V+      +   + L+    R G+++ A  +   +    +   W AL+S  A  G  
Sbjct: 176 ALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-SKNGVSWNALISGFARKGDG 234

Query: 388 DMA 390
           + A
Sbjct: 235 ESA 237


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/563 (36%), Positives = 319/563 (56%), Gaps = 11/563 (1%)

Query: 17  DPRIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D R VHA    S  A D  + N+LI  Y K   +  + ++F+ +   ++VSWT+LI+ ++
Sbjct: 69  DARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYA 128

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            + +   ++ +   ML+     F PN  T ASL K   + + + + G  +H+L++K   H
Sbjct: 129 QNDMPEEAIGLLPGMLKG---RFKPNGFTFASLLKAAGAHADSGI-GRQIHALAVKCDWH 184

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           +  + GSAL+  Y+R    D A  VFD++  ++ V + A+I GFA+      +L  FA+M
Sbjct: 185 EDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEM 244

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             +   +T +  S    + A L A+EQ + +H H + S        G  L+D Y K+G +
Sbjct: 245 LRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSM 304

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DAR+VFD  +   + + WN M+  +AQ G     +  F  +   G   ++ +FL +LTA
Sbjct: 305 IDARKVFDR-VDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTA 363

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL  E +++ E MK  Y LEP ++H+  +++ +GRAG L  A      MP EP AA
Sbjct: 364 CSHGGLVKEGKRYFEMMK-EYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAA 422

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALL+   +H  A +       + +++P D    V++ N+ +  G+WD  A VR++MK
Sbjct: 423 VWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMK 482

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
              V+KE   SW+E++  VH+F+A D  H R E+IY    ++ ++  + GYVP  D +L 
Sbjct: 483 TTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLL 542

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
            V D+E+   L YHSEKLALAF L+   P G T+RI+KN+RIC DCH +FKYIS+V  RE
Sbjct: 543 RVDDQEREANLQYHSEKLALAFALIE-MPAGATIRIMKNIRICGDCHSAFKYISKVFGRE 601

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H F NGSC+C D W
Sbjct: 602 IVVRDTNRFHHFSNGSCSCADYW 624



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 7/185 (3%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           + A A+   +E  R +H H   S    +  +   LI  Y K G V +AR+VFDE +   +
Sbjct: 58  ITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDE-MRRKD 116

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES--EKW 325
            ++W +++AGYAQ       + L   +    F P+ ++F ++L A   AG   +S   + 
Sbjct: 117 MVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKA---AGAHADSGIGRQ 173

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           I  + V+      +   + L+    R G ++ A  +   +    +   W AL+S  A  G
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLD-SKNGVSWNALISGFARKG 232

Query: 386 KADMA 390
             + A
Sbjct: 233 DGETA 237


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/580 (36%), Positives = 332/580 (57%), Gaps = 29/580 (5%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN-- 76
           VHA  +K+     S++    LI  Y+K + L  +  +F+ +P  N+VSWTA+ISA+S   
Sbjct: 265 VHAHMIKTRYLP-SVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRG 323

Query: 77  -SPLSLNIF------------------LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
            +  +LN+F                  LS    P +   PN+ T A++  +C S S  F+
Sbjct: 324 YASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTS-SLGFI 382

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G  +HSL +KL+  D  F GS+L+  Y++      A+ VF+ + ERDVV   A+I G+A
Sbjct: 383 LGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYA 442

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           Q     ++L +F  ++   + S     +G L A + LAA++  + +H H + S +   V+
Sbjct: 443 QLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVV 502

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EM 296
           +   LID Y K G ++ +RR+FD  +     I+WNAM+ GY++ G+   VL+LF L+ E 
Sbjct: 503 LQNSLIDMYSKCGNLTYSRRIFD-TMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREE 561

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV-RYKLEPGLEHYTCLISAMGRAGRL 355
               PD  + LAVL+   + GL  +       M   + ++EP +EHY C++  +GR+GR+
Sbjct: 562 TKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRV 621

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
           E+A      MPFEP AA+W +LL    +H   D+    G++L++I P +   YVI++N+ 
Sbjct: 622 EEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLY 681

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           +  GRW++V+ +R +M  + V KE GRS IE+   +H F A DR H R E+I  K+ EL 
Sbjct: 682 ASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELS 741

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
              + +GYVP    +LH+V + +K + L  HSEKLAL+FGL++ +P    +R++KNLRIC
Sbjct: 742 TSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIA-SPASVPIRVIKNLRIC 800

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            DCH   KYIS+V  RE+ +RD NR+HR + G C+C D W
Sbjct: 801 VDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 144/325 (44%), Gaps = 27/325 (8%)

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
           AF  G  +H+  +K       F  + L+  Y++  S  +A  VFDE+ ER+VV + AMI 
Sbjct: 258 AFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMIS 317

Query: 175 GFAQNSRLVDSLSV-FADMRSSDVG--------------------STMYCVSGALRAAAE 213
            ++Q      +L++ FAD++ S  G                       +  +  L +   
Sbjct: 318 AYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTS 377

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
                  R IH   +    + +V VG+ L+D Y K G + +AR VF E L   + ++  A
Sbjct: 378 SLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVF-ECLPERDVVSCTA 436

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVR 332
           +++GYAQ G     LELF  L+  G   +  ++  VLTAL  +GLA  +  K +    +R
Sbjct: 437 IISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTAL--SGLAALDLGKQVHNHVLR 494

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
            ++   +     LI    + G L  + RI   M +E     W A+L   + HG+     K
Sbjct: 495 SEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTM-YERTVISWNAMLVGYSKHGEGREVLK 553

Query: 393 MGKRLIDINPYDDSAYVIVANVLSG 417
           +   + +       +  I+A VLSG
Sbjct: 554 LFTLMREETKVKPDSVTILA-VLSG 577


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/542 (35%), Positives = 319/542 (58%), Gaps = 5/542 (0%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           +YN LI    +   +  S RLF  +   + +SWT++I+  + + L  +  + + R   L 
Sbjct: 211 MYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDA-IDIFREMKLE 269

Query: 95  FLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            L  +Q T  S+   C  +  A   G  +H+  ++    D  F  SALV  Y + ++  +
Sbjct: 270 NLQMDQYTFGSVLTACGGV-MALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKS 328

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+ VF ++  ++VV + AM+VG+ QN    +++  F+DM+   +    + +   + + A 
Sbjct: 329 AEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCAN 388

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           LA++E+    H  A+ SGL   + V   L+  YGK G + D+ R+F+E +S  + + W A
Sbjct: 389 LASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNE-ISFKDEVTWTA 447

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           +++GYAQ G  +  + LF  +   G  PD+ +F+ VL+A   AGL  +  +  E M   +
Sbjct: 448 LVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEH 507

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            + P  +HYTC+I    RAGR+E+A      MPF PDA  W  LLS    +G  D+    
Sbjct: 508 GIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWA 567

Query: 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHV 453
            + L++++P++ ++YV++++V +  G+W+EVA +RK M+D+ +RKE G SWI+ K +VHV
Sbjct: 568 AEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHV 627

Query: 454 FLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALA 513
           F A D+ +  ++ IY++L +L  +  + GYVP  + +LH+VGD EK + L +HSEKLA+A
Sbjct: 628 FSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIA 687

Query: 514 FGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
           FGL+   P G  +R+VKNLR+C DCH + KYIS++  REI+VRD  R+H F +G+C+CGD
Sbjct: 688 FGLLF-IPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGD 746

Query: 574 LW 575
            W
Sbjct: 747 FW 748



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 194/443 (43%), Gaps = 79/443 (17%)

Query: 16  TDPRIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T  + +H+  +K+    +  + NNLI++Y+K   + Y+ ++F+ +P PN+ SW  ++SA+
Sbjct: 26  TKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAY 85

Query: 75  SN-----------------SPLSLNIFLS-----------------MLRHPTLSFLPNQR 100
           S                    +S N  +S                 ML++   SF  N+ 
Sbjct: 86  SKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDG-SFNLNRI 144

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T ++L    AS       G  +H   +K       F GS LV  YS+      A+KVFDE
Sbjct: 145 TFSTLL-ILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDE 203

Query: 161 I-------------------------------RERDVVCYGAMIVGFAQNSRLVDSLSVF 189
           +                               RERD + + +MI GF QN    D++ +F
Sbjct: 204 LPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIF 263

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            +M+  ++    Y     L A   + A+++ + +H + + +    N+ V + L+D Y K 
Sbjct: 264 REMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKC 323

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
             +  A  VF + ++  N ++W AM+ GY Q G     ++ F  ++  G  PD+++  +V
Sbjct: 324 KNIKSAEAVF-KKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSV 382

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHY----TCLISAMGRAGRLEDAERIAMAM 365
           +++  N     E  ++  R      L  GL  +      L++  G+ G +ED+ R+   +
Sbjct: 383 ISSCANLASLEEGAQFHAR-----ALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEI 437

Query: 366 PFEPDAAVWRALLSFSAIHGKAD 388
            F+ D   W AL+S  A  GKA+
Sbjct: 438 SFK-DEVTWTALVSGYAQFGKAN 459



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 129/293 (44%), Gaps = 34/293 (11%)

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           H   +  + ++  YS+       + +FD +  RD V + ++I G+A    +  S+  +  
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 192 MRSSDVGSTM--YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
           M  +D    +     S  L  A++   ++  R IHGH V  G    V VG+ L+D Y K 
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKM 191

Query: 250 GIVSDARRVFDE----NLSVLN--------------------------SIAWNAMMAGYA 279
           G++S AR+VFDE    N+ + N                          SI+W +M+ G+ 
Sbjct: 192 GMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFT 251

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G     +++F  +++     D+Y+F +VLTA C   +A +  K +    +R   +  +
Sbjct: 252 QNGLDRDAIDIFREMKLENLQMDQYTFGSVLTA-CGGVMALQEGKQVHAYIIRTDYKDNI 310

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
              + L+    +   ++ AE +   M  + +   W A+L     +G ++ A K
Sbjct: 311 FVASALVDMYCKCKNIKSAEAVFKKMTCK-NVVSWTAMLVGYGQNGYSEEAVK 362



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 22  HARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---S 77
           HARAL S      ++ N L+T Y K   +  S RLFN I   + V+WTAL+S ++    +
Sbjct: 399 HARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKA 458

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
             ++ +F SML H      P++ T   +   C+
Sbjct: 459 NETIGLFESMLAH---GLKPDKVTFIGVLSACS 488



 Score = 38.5 bits (88), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           YC    L+   E     + + +H H + +       +   LI  Y K G +  A +VFD+
Sbjct: 12  YC--ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQ 69

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            +   N  +WN +++ Y++ G  S +  LF  +  R    D  S+ ++++     GL  +
Sbjct: 70  -MPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRR----DGVSWNSLISGYAGCGLIYQ 124

Query: 322 SEK 324
           S K
Sbjct: 125 SVK 127


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/548 (38%), Positives = 315/548 (57%), Gaps = 12/548 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPL--SLNIFLSML 88
           D  I   L+  Y   + LS +  LF+ IP  NI  W  LI  ++ N P   ++ ++  M 
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMF 168

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
            +     +P+  T   + K CA+LS A   G  +H   ++       F G+AL+  Y++ 
Sbjct: 169 DY---GLVPDNFTFPFVLKACAALS-AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKC 224

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               +A++VFD+I  RD V + +M+  ++QN      LS+ ++M  + +  T   +  A+
Sbjct: 225 GCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAI 284

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A+A+ AA+ Q R +HG +     + +  V T L+D Y K G V  AR +F E L V   
Sbjct: 285 SASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLF-ERLGVKRV 343

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKWIE 327
           ++WNAM+ GYA  G  +  L+LF   EM   A PD  +F+ VL+A  + GL  E   + E
Sbjct: 344 VSWNAMITGYAMHGHATEALDLFE--EMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFE 401

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            M   YK++P ++HYTC++  +G +GRL++A  + M M   PD+ VW ALL+   IH   
Sbjct: 402 TMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANV 461

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
           ++     +RLI++ P D   YVI++N+ +  G+W+ VA++RK+M DRR++K    SWIEV
Sbjct: 462 ELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEV 521

Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
           K KVH FL+GD  H  +++IY++L  +    +  GY P    + H+V D EK   +  HS
Sbjct: 522 KNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHS 581

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           E+LA+AFGL+S  P G  L I KNLRIC DCH + K+IS++ EREI VRDVNRYH F +G
Sbjct: 582 ERLAIAFGLIS-TPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDG 640

Query: 568 SCTCGDLW 575
            C+CGD W
Sbjct: 641 VCSCGDYW 648


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/579 (35%), Positives = 318/579 (54%), Gaps = 38/579 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D S +N +I  + +   +  ++  F  +   +IV+W ++IS ++       +L++F  ML
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKML 270

Query: 89  RHPTLSFLPNQRTLASLFKTCASL----------SHAFLFGLSLHSLSLKLSLHDKPFCG 138
           R   LS  P++ TLAS+   CA+L          SH    G  +  + L   +     CG
Sbjct: 271 RDSMLS--PDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCG 328

Query: 139 ----------------------SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
                                 +AL+  Y +    + AK +FD +++RDVV + AMIVG+
Sbjct: 329 GVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGY 388

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
            Q+    +++++F  M   +     Y ++  L  A+ LA++   + IHG AV SG   +V
Sbjct: 389 EQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSV 448

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            V   LI  Y KAG ++ A R FD      ++++W +M+   AQ G     LELF  + M
Sbjct: 449 SVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLM 508

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            G  PD  +++ V +A  +AGL  +  ++ + MK   K+ P L HY C++   GRAG L+
Sbjct: 509 EGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQ 568

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A+     MP EPD   W +LLS   ++   D+     +RL+ + P +  AY  +AN+ S
Sbjct: 569 EAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYS 628

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
             G+W+E A++RK MKD RV+KE G SWIEVK KVH F   D +H +  +IY  + ++ +
Sbjct: 629 ACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWD 688

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
           E +++GYVP    +LH++ +  K + L +HSEKLA+AFGL+S  P   TLRI+KNLR+C 
Sbjct: 689 EIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIS-TPDKTTLRIMKNLRVCN 747

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH + K+IS++V REI+VRD  R+H F +G C+C D W
Sbjct: 748 DCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 202/485 (41%), Gaps = 79/485 (16%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +HAR L      R+ +  N +++ Y+K   +  S   F+ +P  + VSWT +I  + N  
Sbjct: 66  LHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIG 125

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               ++ I   M+R       P+Q TL ++  + A+ +     G  +HS  +KL L    
Sbjct: 126 QYHKAIRIMGEMMRE---GIEPSQFTLTNVLASVAA-TRCLETGKKVHSFIVKLGLRGNV 181

Query: 136 FCGSALVHFYSRFRSPDNAKKVFD-------------------------------EIRER 164
              ++L++ Y++   P  AK VFD                               ++ ER
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           D+V + +MI G+ Q    + +L +F+ M R S +    + ++  L A A L  +     I
Sbjct: 242 DIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQI 301

Query: 224 HGHAVVSGLDRNVIV---------------------------------GTGLIDGYGKAG 250
           H H V +G D + IV                                  T L+DGY K G
Sbjct: 302 HSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLG 361

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +++A+ +FD +L   + +AW AM+ GY Q G     + LF  +      P+ Y+  A+L
Sbjct: 362 DMNEAKNIFD-SLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAML 420

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +   +    G   K I    V+      +     LI+   +AG +  A R    +  E D
Sbjct: 421 SVASSLASLGHG-KQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERD 479

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
              W +++   A HG A+ A ++ + ++   + P D   YV V +  +  G  ++  +  
Sbjct: 480 TVSWTSMIIALAQHGHAEEALELFETMLMEGLRP-DHITYVGVFSACTHAGLVNQGRQYF 538

Query: 429 KVMKD 433
            +MKD
Sbjct: 539 DMMKD 543



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 94/189 (49%), Gaps = 11/189 (5%)

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           +++H   + SGL  +V +   L++ Y K G    AR++FDE + +  + +WN +++ YA+
Sbjct: 34  QLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDE-MPLRTAFSWNTVLSAYAK 92

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
           +GD  +  E F  L  R    D  S+  ++    N G   ++ + +  M +R  +EP   
Sbjct: 93  RGDMDSSCEFFDRLPQR----DSVSWTTMIVGYKNIGQYHKAIRIMGEM-MREGIEPSQF 147

Query: 341 HYTCLISAMGRAGRLEDAERI---AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
             T +++++     LE  +++    + +    + +V  +LL+  A  G   MA  +  R+
Sbjct: 148 TLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRM 207

Query: 398 I--DINPYD 404
           +  DI+ ++
Sbjct: 208 VVKDISSWN 216


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/540 (36%), Positives = 316/540 (58%), Gaps = 5/540 (0%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS-F 95
           N +IT   +  ++  S RLF  +   + +SWT +I+    + L     L M R   L+ F
Sbjct: 208 NTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREA-LDMFREMRLAGF 266

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
             +Q T  S+   C SL  A   G  +H+  ++    D  F GSALV  YS+ RS  +A+
Sbjct: 267 AMDQFTFGSVLTACGSLL-ALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAE 325

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            VF  + +++V+ + AM+VG+ QN    +++ +F +M+ + V    + +   + + A LA
Sbjct: 326 TVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLA 385

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           ++E+    H  A+VSGL   + V   LI  YGK G   ++ R+F E +++ + ++W A++
Sbjct: 386 SLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTE-MNIRDEVSWTALL 444

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           AGYAQ G  +  + LF  +   G  PD  +F+ VL+A   AGL  +  ++ E M   + +
Sbjct: 445 AGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGI 504

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
            P ++H TC+I  +GRAGRLE+A      MP  PD   W  LLS   +HG  ++      
Sbjct: 505 MPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAAD 564

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
            LI + P + ++YV+++++ +  G+WD+VA++R+ M+D+RVRKE G SWI+ KGKVHVF 
Sbjct: 565 SLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFS 624

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
           A D+       IY +L +L  +    GYVP    +LH+V + EK + L +HSEKLA+AFG
Sbjct: 625 ADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFG 684

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           L+   P G  +R++KNLR+C DCH + K+IS++ +REI+VRD  R+H F +G+C+CGD W
Sbjct: 685 LIF-VPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/477 (24%), Positives = 199/477 (41%), Gaps = 75/477 (15%)

Query: 10  QPQNTSTDPRIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           + QN  T  + +H   LK+  Q +  + NNLIT Y K   L+Y+  +F+HIP PN+ SW 
Sbjct: 17  ESQN-QTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWN 75

Query: 69  ALISAHSNSPL----------------------------------SLNIFLSMLRHPTLS 94
            ++S +S   L                                  ++ ++  ML+   ++
Sbjct: 76  TILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMN 135

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
              N+ T +++   C+      L G  ++   LK       F GS LV  Y++     +A
Sbjct: 136 L--NRITFSTMLILCSKFRCVDL-GRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDA 192

Query: 155 KKVFDE-------------------------------IRERDVVCYGAMIVGFAQNSRLV 183
           K+ FDE                               ++ERD + +  MI G  QN    
Sbjct: 193 KRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLER 252

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           ++L +F +MR +      +     L A   L A+ + + IH + + +    NV VG+ L+
Sbjct: 253 EALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALV 312

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           D Y K   +  A  VF + +   N I+W AM+ GY Q G     +++F  ++  G  PD+
Sbjct: 313 DMYSKCRSIKSAETVF-KRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDD 371

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
           ++  +V+++  N     E  ++  R  V   L   +     LI+  G+ G  E++ R+  
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCRALVS-GLISFITVSNALITLYGKCGSTENSHRLFT 430

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
            M    D   W ALL+  A  GKA+    + +R++      D    I   VLS   R
Sbjct: 431 EMNIR-DEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFI--GVLSACSR 484


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 320/561 (57%), Gaps = 11/561 (1%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA   +S  A D  + N+LI  Y K   +S +  +F+ +PS ++VSWT LI+ ++ +
Sbjct: 80  RAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQN 139

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +   ++ +   MLR     F PN  T  SL K   +     + G  +H+L++K +  + 
Sbjct: 140 YMPAEAIGLLPDMLR---ARFRPNGFTFTSLLKATGACGGCSI-GEQMHALAVKYNWDED 195

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            + GSAL+  Y+R    D A  VFD +  ++ V + A+I GFA+ +    +L  FA+M+ 
Sbjct: 196 VYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQR 255

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           +  G+T +  S    A A + A+EQ R +H H + SG      VG  ++  Y K+G + D
Sbjct: 256 NGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVD 315

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR+VFD  +   + + WN M+   AQ G     +  F  +   G   ++ +FL+VLTA  
Sbjct: 316 ARKVFDR-MDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACS 374

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           + GL  E + + + MK  Y ++P ++HY   +  +GRAG L++A      MP EP AAVW
Sbjct: 375 HGGLVKEGKHYFDMMK-DYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVW 433

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    +H  A M       + +++P D    V++ N+ +  G+W++ A VRK+MK  
Sbjct: 434 GALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKAT 493

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V+KE   SW++++  VH+F+A D  H ++ DIY    E+    ++ GYVP    +L ++
Sbjct: 494 GVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHI 553

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            ++E+   L YHSEK+ALAF L++  P G ++RI+KN+RIC DCH +FKY+S+V +REIV
Sbjct: 554 NEQERETKLKYHSEKIALAFALIN-MPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIV 612

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+H F  GSC+CGD W
Sbjct: 613 VRDTNRFHHFSEGSCSCGDYW 633



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           + A A+   +   R IH H   S L  +  +   LI  Y K G VSDAR VFD+ +   +
Sbjct: 67  IAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDK-MPSRD 125

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W  ++AGYAQ    +  + L   +    F P+ ++F ++L A    G     E+ + 
Sbjct: 126 VVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQ-MH 184

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
            + V+Y  +  +   + L+    R  +++ A
Sbjct: 185 ALAVKYNWDEDVYVGSALLDMYARCEQMDMA 215


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 328/559 (58%), Gaps = 10/559 (1%)

Query: 21   VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
            +HA ++K+    +R +Y  L+  Y+K   +  +   F  + + +++ W+ +IS ++    
Sbjct: 654  IHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQ 713

Query: 77   SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            +  +  +F+ M+R    S  PN+ +L+S+ + CA++    L G  +H+ ++K+    + F
Sbjct: 714  NEQAFELFIRMMRS---SVSPNEFSLSSVLQACANMPLLDL-GKQIHNHAIKIGHESELF 769

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             G+AL+  Y++    +++ ++F  +R+ + V +  +IVG++++     +LSVF +MR++ 
Sbjct: 770  VGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAAS 829

Query: 197  VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
            V ST    S  LRA A  A++     +H     S  + + IV   LID Y K G + DAR
Sbjct: 830  VPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAR 889

Query: 257  RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             +F E L   + ++WNA+++GYA  G  +   ELF ++       ++ +F+A+L+   + 
Sbjct: 890  EIF-ETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGST 948

Query: 317  GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            GL  +     + M++ + +EP +EHYTC++  +GRAGRL DA      +P  P A VWRA
Sbjct: 949  GLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRA 1008

Query: 377  LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            LLS   +H   ++     +++++I P D++ YV+++N+ S  G  D+VA  RK M++  V
Sbjct: 1009 LLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGV 1068

Query: 437  RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            RKE G SW+E+KG+VH F  G   H     I   L  L  +  R GYVP  DE+LH++ +
Sbjct: 1069 RKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEE 1128

Query: 497  REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             +K   LW HSE+LALA+GLV   P G  +RI+KNLR C DCH  FK IS++V++EI+VR
Sbjct: 1129 EQKVRMLWVHSERLALAYGLVM-TPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVR 1187

Query: 557  DVNRYHRFLNGSCTCGDLW 575
            D+NR+H F  G+C+CGD W
Sbjct: 1188 DINRFHHFEEGTCSCGDYW 1206



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 189/408 (46%), Gaps = 20/408 (4%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           VHA A K    DR+ +  + LI  YS   ++S + R+F+ I   + V+WTA++S +S + 
Sbjct: 553 VHACACKLGH-DRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSEND 611

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               +L IF  M     +S L N   L S+ +    LS   L G  +H+ S+K     + 
Sbjct: 612 CPENTLQIFSKM--RVAVSKL-NPFALTSVLRAAVCLSSVVL-GKGIHACSVKTLYDTER 667

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
               AL+  Y++  + ++A+  F+ +   DV+ +  MI  +AQ ++   +  +F  M  S
Sbjct: 668 HVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRS 727

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V    + +S  L+A A +  ++  + IH HA+  G +  + VG  LID Y K   +  +
Sbjct: 728 SVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESS 787

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             +F  +L  +N ++WN ++ GY++ G     L +F  +        + ++ +VL A C 
Sbjct: 788 LEIFS-SLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRA-CA 845

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           +  +      +  +  +            LI +  + G + DA  I   +  E D   W 
Sbjct: 846 STASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLK-ECDLVSWN 904

Query: 376 ALLSFSAIHGKADMASK----MGKRLIDINPYDDSAYVIVANVLSGVG 419
           A++S  A+HG+A MA +    M K  I  N   D  +V + +V    G
Sbjct: 905 AIISGYAVHGQAAMAQELFDMMSKNSIKAN---DITFVALLSVCGSTG 949



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 13/307 (4%)

Query: 19  RIVHARALKS---SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           R VH   ++S   ++ D    N L+  Y+K      + R+F+ +P  N+VS+  L+  H+
Sbjct: 448 RAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHA 507

Query: 76  --NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS--LHSLSLKLSL 131
                   +     LR        NQ  L ++ K   ++      GL+  +H+ + KL  
Sbjct: 508 LRGEFEEASALFQRLRWEGHEV--NQFVLTTVLKLVVAMD---TLGLAWGVHACACKLGH 562

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F GSAL+  YS      +A++VFD I  +D V + AM+  +++N    ++L +F+ 
Sbjct: 563 DRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSK 622

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR +      + ++  LRAA  L+++   + IH  +V +  D    V   L+D Y K G 
Sbjct: 623 MRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGN 682

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DAR  F E ++  + I W+ M++ YAQ        ELF  +     +P+E+S  +VL 
Sbjct: 683 IEDARLAF-EMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQ 741

Query: 312 ALCNAGL 318
           A  N  L
Sbjct: 742 ACANMPL 748



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 128/264 (48%), Gaps = 5/264 (1%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           FC + L++ Y++     +A +VFD + ER++V +  ++ G A      ++ ++F  +R  
Sbjct: 466 FCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWE 525

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                 + ++  L+    +  +     +H  A   G DRN  VG+ LID Y   G+VSDA
Sbjct: 526 GHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDA 585

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL-TALC 314
           RRVFD  +   +++AW AM++ Y++       L++F  + +     + ++  +VL  A+C
Sbjct: 586 RRVFD-GIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVC 644

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            + +     K I    V+   +     Y  L+    + G +EDA R+A  M    D  +W
Sbjct: 645 LSSVV--LGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDA-RLAFEMVTNDDVILW 701

Query: 375 RALLSFSAIHGKADMASKMGKRLI 398
             ++S  A   + + A ++  R++
Sbjct: 702 SLMISRYAQCNQNEQAFELFIRMM 725


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/560 (35%), Positives = 327/560 (58%), Gaps = 5/560 (0%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           + ++VH   L S+ + D  I N+L+  Y++   L  + RLF+ +P  ++VSWT++I+ ++
Sbjct: 92  EGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYA 151

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +  + +  L   R  +    PN+ TL+SL K C  ++ ++  G  +H+   K   H   
Sbjct: 152 QNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMA-SYNCGRQIHACCWKYGCHSNV 210

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F GS+LV  Y+R      A  VFD++  ++ V + A+I G+A+     ++L++F  M+  
Sbjct: 211 FVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQRE 270

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
               T +  S  L + + +  +EQ + +H H + S       VG  L+  Y K+G + DA
Sbjct: 271 GYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDA 330

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VFD+ + V + ++ N+M+ GYAQ G      + F  +   G  P++ +FL+VLTA  +
Sbjct: 331 EKVFDKLVKV-DVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSH 389

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           A L  E + +   M+ +Y +EP + HY  ++  +GRAG L+ A+     MP EP  A+W 
Sbjct: 390 ARLLDEGKHYFGLMR-KYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWG 448

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ALL  S +H   +M +   +R+ +++P     + ++AN+ +  GRW++VA+VRK+MKD  
Sbjct: 449 ALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSG 508

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           V+KE   SW+EV+  VHVF+A D  H + E I+    +L ++ + +GYVP    +L  V 
Sbjct: 509 VKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVD 568

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
            +EK   L YHSEKLAL+F L++  P G T+RI+KN+R+C DCH + KY+S VV+REI+V
Sbjct: 569 QQEKELNLQYHSEKLALSFALLN-TPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIV 627

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H F +G C+CGD W
Sbjct: 628 RDTNRFHHFCDGFCSCGDYW 647



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 90/190 (47%), Gaps = 3/190 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L+   +L  +++ +++H H + S    ++++   L+  Y + G +  ARR+FDE +   +
Sbjct: 81  LKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDE-MPHRD 139

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W +M+ GYAQ    S  L LF  +   G  P+E++ L+ L   C    +    + I 
Sbjct: 140 MVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT-LSSLVKCCGYMASYNCGRQIH 198

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
               +Y     +   + L+    R G L +A  +   +  + + + W AL++  A  G+ 
Sbjct: 199 ACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS-WNALIAGYARKGEG 257

Query: 388 DMASKMGKRL 397
           + A  +  R+
Sbjct: 258 EEALALFVRM 267


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/538 (36%), Positives = 317/538 (58%), Gaps = 5/538 (0%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           L+  Y+K   +  +  +F  IP  +++ W+ LIS ++ S  +   F   LR      +PN
Sbjct: 290 LLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPN 349

Query: 99  QRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           + +L+ + + CA++  AFL  G  +H+L++KL    + F G+AL+  Y++ R+ +N+ ++
Sbjct: 350 EFSLSGVLQACANI--AFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEI 407

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           F  +++ + V +  +IVG+ Q+    D+LSVF +MR++ + ST    S  LRA A  +++
Sbjct: 408 FSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSI 467

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
           +    IH     S  + + IV   LID Y K G + DA +VF E++   + ++WN++++ 
Sbjct: 468 KHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVF-ESIVECDVVSWNSIISA 526

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           YA  G  +  LELF  +       ++ +F+++L+   + GL  +       M + ++++P
Sbjct: 527 YALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKP 586

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            +EHYTC++  +GRAGRL DA +    +P  P   VWRALLS   +H    +     +++
Sbjct: 587 SMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKV 646

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
           +DI P+D++ YV+++N+ +  G  DEVA  RK M++  V+KE G SW+E+KG+VH F  G
Sbjct: 647 LDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVG 706

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
              H     I   L  L  +  R GYVP  + +LH+V + EK   LW HSE+LALA+GL 
Sbjct: 707 SADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGL- 765

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S  P G  +RI+KNLR C DCH  FK IS++V+REI+VRD+NR+H F  G C+CGD W
Sbjct: 766 SMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 197/425 (46%), Gaps = 17/425 (4%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +HA A K    DR+ +    LI  YS    + ++  +F+ I   + V+WTA++S +S + 
Sbjct: 170 IHACACKLGH-DRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSEND 228

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           +   +LN F  M       F PN   L S  K    LS A L G  +H  S+K     +P
Sbjct: 229 IPEYALNTFSKM---RMTGFKPNPFVLTSALKAAVCLSSALL-GKGIHGCSVKTLYDTEP 284

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             G AL+  Y++    ++A  +F+ I   DV+ +  +I  +AQ+ +   +  +F  M  S
Sbjct: 285 HVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRS 344

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V    + +SG L+A A +A +E    IH  A+  G +  + VG  L+D Y K   + ++
Sbjct: 345 FVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENS 404

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             +F  +L   N ++WN ++ GY Q G     L +FH +        + +F +VL A  N
Sbjct: 405 LEIF-SSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACAN 463

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
                 + + I  +  +            LI    + G + DA ++  ++  E D   W 
Sbjct: 464 TSSIKHAVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESI-VECDVVSWN 521

Query: 376 ALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDE-VAEVRKVMK 432
           +++S  A+HG+A  A ++  R+   DI   +D  +V + +V    G  ++ +     +M 
Sbjct: 522 SIISAYALHGRATNALELFDRMNKSDIKA-NDVTFVSLLSVCGSTGLVNQGLWLFNSMMM 580

Query: 433 DRRVR 437
           D R++
Sbjct: 581 DHRIK 585



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 164/350 (46%), Gaps = 14/350 (4%)

Query: 19  RIVHARALKS---SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           R VHAR ++    +Q D    N L+  Y+K   L+ + RLF+ +P  N VS+  L+  ++
Sbjct: 65  RAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYA 124

Query: 76  ---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
                  +L +F  + R        N   L ++ K   ++    L    +H+ + KL   
Sbjct: 125 LRGEFEEALELFRRLQRE---GHEVNHFVLTTILKVLVTMDAPGL-ACGIHACACKLGHD 180

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F G+AL+  YS   +  +A+ VFD I  +D V + AM+  +++N     +L+ F+ M
Sbjct: 181 RNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKM 240

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R +      + ++ AL+AA  L++    + IHG +V +  D    VG  L+D Y K G +
Sbjct: 241 RMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDI 300

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APDEYSFLAVLT 311
            DA  +F E +   + I W+ +++ YAQ        E+F L  MR F  P+E+S   VL 
Sbjct: 301 EDAHAIF-EMIPHDDVILWSFLISRYAQSCQNEQAFEMF-LRMMRSFVVPNEFSLSGVLQ 358

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           A  N       E+ I  + ++   E  L     L+    +   +E++  I
Sbjct: 359 ACANIAFLELGEQ-IHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEI 407



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 125/270 (46%), Gaps = 17/270 (6%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           FC + L++FY++      A+++FD + ER+ V +  ++ G+A      ++L +F  ++  
Sbjct: 83  FCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQRE 142

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                 + ++  L+    + A      IH  A   G DRN  VGT LID Y   G V  A
Sbjct: 143 GHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHA 202

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL----- 310
           R VFD  +   +++ W AM++ Y++       L  F  + M GF P+ +   + L     
Sbjct: 203 RCVFD-GIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVC 261

Query: 311 --TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
             +AL   G+ G S      +K  Y  EP +     L+    + G +EDA  I   +P +
Sbjct: 262 LSSALLGKGIHGCS------VKTLYDTEPHVG--GALLDMYAKCGDIEDAHAIFEMIPHD 313

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLI 398
            D  +W  L+S  A   + + A +M  R++
Sbjct: 314 -DVILWSFLISRYAQSCQNEQAFEMFLRMM 342


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/640 (33%), Positives = 344/640 (53%), Gaps = 75/640 (11%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-N 63
           L Q P    + +  + +HA+ L++S    S+ + +++ YS  NLL  SL +FN +PSP  
Sbjct: 11  LLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPT 70

Query: 64  IVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
            ++W ++I  +++  L   SL+ F+ ML        P+     S+ K+C +L     FG 
Sbjct: 71  TLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKY---PDHNVFPSVLKSC-TLMKDLRFGE 126

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA---KKVFDE----------------- 160
           S+H   ++L +    +  +AL++ YS+F S +     KKVFDE                 
Sbjct: 127 SVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYL 186

Query: 161 ---------IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
                    + +RD+V +  +I G AQN    D+L +  +M ++D+    + +S  L   
Sbjct: 187 GSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIF 246

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           AE   + + + IHG+A+ +G D +V +G+ LID Y K   V D+ RVF   L   + I+W
Sbjct: 247 AEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF-YMLPQHDGISW 305

Query: 272 NAMMAGYAQQGDQSTVLELF------------------------------------HLLE 295
           N+++AG  Q G     L+ F                                    +++ 
Sbjct: 306 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 365

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
           M G  P+  +F+AVLTA  +AGL  E+ K+   M   Y++ PGLEHY  +   +GR GRL
Sbjct: 366 MEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRL 425

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
           E+A      M  EP  +VW  LL+   +H   ++A K+ K+L  ++P +  AYV+++N+ 
Sbjct: 426 EEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIY 485

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           S  GRW +  ++R  M+D+ ++K+   SWIE+K KVH F+AGD+ H   + I   L  L+
Sbjct: 486 SAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLL 545

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
           E+ ER GYV    E+LH+V + +KR  L  HSE+LA+ FG++S  P G T+R+ KNLR+C
Sbjct: 546 EQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIIS-TPAGTTIRVTKNLRVC 604

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            DCH + K+IS++V REIVVRD +R+H F +G C+CGD W
Sbjct: 605 VDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 644


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/590 (36%), Positives = 313/590 (53%), Gaps = 45/590 (7%)

Query: 21  VHARALKSSQADRSIYN-NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   +       I N  L  +Y+    L YS+ LF    +P++  WTA+I  H+   L
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGL 108

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +LN +  ML   T    PN  T +S+ K C         G +LHS ++KL      +
Sbjct: 109 HEQALNFYAQML---TQGVEPNAFTFSSILKLCPIEP-----GKALHSQAVKLGFDSDLY 160

Query: 137 CGSALVHFYSR-------------------------------FRSPDNAKKVFDEIRERD 165
             + L+  Y+R                                   D A+ +FD + ERD
Sbjct: 161 VRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERD 220

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
            VC+  MI G+ QN    ++L +F  M  +        V   L A  +L A+E  R +H 
Sbjct: 221 GVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS 280

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           +   +G+  NV VGT L+D Y K G + DAR VFD+ +   + +AWN+M+ GYA  G   
Sbjct: 281 YIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDK-IDDKDVVAWNSMIVGYAMHGFSQ 339

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             L+LF  +   G  P   +F+ +L+A  ++G   E      +MK  Y +EP +EHY C+
Sbjct: 340 EALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCM 399

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           ++ +GRAG +E A  +   M  EPD  +W  LL    +HGK  +  K+ + L+D N  + 
Sbjct: 400 VNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANS 459

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             Y++++N+ + VG WD VA +R +MKD  V+KE G S IEV  KVH FLAG   H + +
Sbjct: 460 GTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRK 519

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT 525
           +IY  L E+    +  GY P  D +LH++G+ EK  +L  HSEKLA+AFGL++  P G T
Sbjct: 520 EIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQP-GTT 578

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++IVKNLR+C DCHE  K IS++  R+IVVRD NR+H F+NGSC+CGD W
Sbjct: 579 IKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 154/377 (40%), Gaps = 54/377 (14%)

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
           F+   R LA L     ++SH     L +H++  +  L   P     L   Y+     D +
Sbjct: 27  FISTNR-LAVLIDKSKTISHL----LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYS 81

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
             +F   +   V  + A+I G A       +L+ +A M +  V    +  S  L+    L
Sbjct: 82  VALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILK----L 137

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD-------------- 260
             +E  + +H  AV  G D ++ V TGL+D Y + G V  A+++FD              
Sbjct: 138 CPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAML 197

Query: 261 ----------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
                           + +   + + WN M+ GY Q G  +  L LF  +      P+E 
Sbjct: 198 TCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEV 257

Query: 305 SFLAVLTALCNAGLAGESEKW----IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
           + L+VL+A    G A ES +W    IE   +++ +  G    T L+    + G LEDA R
Sbjct: 258 TVLSVLSACGQLG-ALESGRWVHSYIENNGIQFNVHVG----TALVDMYSKCGSLEDA-R 311

Query: 361 IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
           +      + D   W +++   A+HG +  A ++ K +  +  +  +   I   +LS  G 
Sbjct: 312 LVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFI--GILSACGH 369

Query: 421 WDEVAE---VRKVMKDR 434
              V E   +   MKD 
Sbjct: 370 SGWVTEGWDIFNKMKDE 386


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/565 (34%), Positives = 326/565 (57%), Gaps = 5/565 (0%)

Query: 13  NTSTDPRIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           N   + +I+HA  L S   D  +  N + N Y+K   L Y+ +LF+ + S ++V+WTALI
Sbjct: 29  NKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALI 88

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL-SHAFLFGLSLHSLSLKLS 130
           + +S      +  L +     +   PNQ TLASL K  + + S   L G  LH L L+  
Sbjct: 89  TGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYG 148

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                +   A++  Y+R    + A+ +FD +  ++ V + A+I G+A+  +   +  +F+
Sbjct: 149 YDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFS 208

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           +M   +V  T +  S  L A A + ++EQ + +H   +  G      VG  L+D Y K+G
Sbjct: 209 NMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSG 268

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            + DA++VFD  L+  + ++WN+M+ GY+Q G     L+ F  +     AP++ +FL VL
Sbjct: 269 SIEDAKKVFDR-LAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVL 327

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           TA  +AGL  E   + + MK +Y +EP + HY  ++  +GRAG L+ A +    MP +P 
Sbjct: 328 TACSHAGLLDEGRHYFDMMK-KYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPT 386

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           AAVW ALL    +H   ++     + + +++ +    +V++ N+ +  GRW++ A+VRK+
Sbjct: 387 AAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKM 446

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK+  V+KE   SW+E++ +VHVF+A D  H +  +I+    ++ ++ + +GYVP    +
Sbjct: 447 MKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHV 506

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L  +  +E+   L YHSEKLALAF L++  P G T+RI KN+RIC DCH +FK++S++VE
Sbjct: 507 LLCMDQQEREAKLQYHSEKLALAFALLN-TPPGSTIRIKKNIRICGDCHSAFKFVSKLVE 565

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REI+VRD NR+H F +G+C+C D W
Sbjct: 566 REIIVRDTNRFHHFCDGACSCEDYW 590



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 3/184 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L+    L  + + ++IH   + S    ++++   L++ Y K G +  AR++FDE +S  +
Sbjct: 22  LKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDE-MSSRD 80

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE-KWI 326
            + W A++ GY+Q       L L   +   G  P++++  ++L A    G     + + +
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             + +RY  +  +     ++    R   LE+A+ I   M  + + + W AL++  A  G+
Sbjct: 141 HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVS-WNALIAGYARKGQ 199

Query: 387 ADMA 390
            D A
Sbjct: 200 GDKA 203


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/517 (37%), Positives = 306/517 (59%), Gaps = 4/517 (0%)

Query: 59  IPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           + + ++ SWT+LI+ ++ + +       +L      F PN  T ASL K  A  S +   
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKA-AGASASSGI 59

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H+L++K   HD  + GSAL+  Y+R    D A  VFD++  ++ V + A+I GFA+
Sbjct: 60  GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 119

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
                 +L +FA+M+ +   +T +  S    A A + A+EQ + +H H + SG   +  V
Sbjct: 120 KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV 179

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           G  ++D Y K+G + DAR+VFD ++   + + WN+M+  +AQ G     +  F  +   G
Sbjct: 180 GNTILDMYAKSGSMIDARKVFD-HVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCG 238

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
              ++ +FL++LTA  + GL  E +++ + MK  + LEP ++HY  ++  +GRAG L DA
Sbjct: 239 VHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EHNLEPEIDHYVTVVDLLGRAGLLNDA 297

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
                 MP +P AAVW ALL    +H  A +       + +++P D    V++ N+ +  
Sbjct: 298 LVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYAST 357

Query: 419 GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC 478
           G+WD  A VRK+MK   V+KE   SW+E++  VH+F+A D  H R+E+IY K  E+  + 
Sbjct: 358 GQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQI 417

Query: 479 ERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDC 538
            + GYVP  D +L +V ++E++  L YHSEK+ALAF L++  P G T+RI+KN+RIC DC
Sbjct: 418 RKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALIN-MPLGATIRIMKNIRICGDC 476

Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           H +F+YIS+V EREIVVRD NR+H F +GSC+CGD W
Sbjct: 477 HSAFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 16/243 (6%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---N 76
           +HA  +K     D  + + L+  Y++   +  ++ +F+ + S N VSW ALI+  +   +
Sbjct: 63  IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 122

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F  M R+    F     T +S+F   A +  A   G  +H+  +K       F
Sbjct: 123 GETTLLMFAEMQRN---GFEATHFTYSSVFSAIAGIG-ALEQGKWVHAHMIKSGERLSAF 178

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+ ++  Y++  S  +A+KVFD + ++D+V + +M+  FAQ     ++++ F +MR   
Sbjct: 179 VGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCG 238

Query: 197 VGSTMYCVSGALRAAAELAAMEQCR----VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           V          L A +    +++ +    ++  H +   +D  V V    +D  G+AG++
Sbjct: 239 VHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTV----VDLLGRAGLL 294

Query: 253 SDA 255
           +DA
Sbjct: 295 NDA 297


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 319/557 (57%), Gaps = 5/557 (0%)

Query: 21   VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            VH  A+K    + S  +  LI  YSK   +  +  L +     ++ SW A++  +  S  
Sbjct: 1020 VHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNK 1079

Query: 80   SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            S            +    ++ TLA+  K    L +    G  + + ++KL  ++  +  S
Sbjct: 1080 SRKALEHFSLMHEMGIPIDEITLATAIKASGCLIN-LKQGKQIQAYAIKLGFNNDLWVSS 1138

Query: 140  ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
             ++  Y +     NA ++F EI   D V +  MI G+ +N     +LSV+  MR S V  
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQP 1198

Query: 200  TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
              Y  +  ++A++ L A+EQ + IH + V      +  VGT L+D Y K G V DA RVF
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF 1258

Query: 260  DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
               + V   + WNAM+ G AQ G     L LF  ++  G  PD+ +F+ VL+A  ++GL 
Sbjct: 1259 -RKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLF 1317

Query: 320  GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             E+ K+ + M   Y + P +EHY+CL+ A+GRAGR+++AE +  +MPF+  A+++RALL 
Sbjct: 1318 SEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLG 1377

Query: 380  FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
                 G A+ A ++  +L+ ++P D SAYV+++N+ +   +WD+V + R +MK + V+K+
Sbjct: 1378 ACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKD 1437

Query: 440  GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG-YVPVWDEMLHNVGDRE 498
             G SWI+VK KVH+F+  DR H +   IY K+ +LM+     G YVP  D  L +V + E
Sbjct: 1438 PGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEE 1497

Query: 499  KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
            K  AL+YHSEKLA+AFGL+S  P   T+R++KNLR+C DCH + K IS++ +REIV+RD 
Sbjct: 1498 KERALYYHSEKLAIAFGLIS-TPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDA 1556

Query: 559  NRYHRFLNGSCTCGDLW 575
            NR+H F NG+C+CGD W
Sbjct: 1557 NRFHHFRNGTCSCGDYW 1573



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 210/421 (49%), Gaps = 19/421 (4%)

Query: 21   VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +HA  +KSS A    + N+L+  YSK+ ++  + + F + P  +++SW  +IS+++ + L
Sbjct: 916  IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNL 975

Query: 80   SLN---IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA--FLFGLSLHSLSLKLSLHDK 134
             +     F  +LR       P+Q TLAS+ + C++      F  G  +H  ++K  + + 
Sbjct: 976  EMEAICTFRDLLRD---GLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIND 1032

Query: 135  PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
             F  +AL+  YS+    D A+ +     + D+  + A++ G+ ++++   +L  F+ M  
Sbjct: 1033 SFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE 1092

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
              +      ++ A++A+  L  ++Q + I  +A+  G + ++ V +G++D Y K G + +
Sbjct: 1093 MGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPN 1152

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            A  +F E +S  + +AW  M++GY + GD+   L ++HL+ + G  PDEY+F A L    
Sbjct: 1153 ALELFGE-ISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTF-ATLIKAS 1210

Query: 315  NAGLAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            +   A E  K I    V  KL+  L+H+  T L+    + G ++DA R+   M       
Sbjct: 1211 SCLTALEQGKQIHANVV--KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VV 1267

Query: 373  VWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             W A+L   A HG  D A  + + +    I P D   ++ V +  S  G + E  +    
Sbjct: 1268 FWNAMLLGLAQHGHVDEALNLFRTMQSNGIQP-DKVTFIGVLSACSHSGLFSEAYKYFDA 1326

Query: 431  M 431
            M
Sbjct: 1327 M 1327



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 155/352 (44%), Gaps = 23/352 (6%)

Query: 50   SYSLRLFNHIPSPNIVSWTALISA--HSNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLF 106
            +Y++++F      NI +W   ++   H+   ++ ++ F ++LR    S + +      + 
Sbjct: 845  AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLR----STIGHDSVTLVII 900

Query: 107  KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166
             + A  +     G  +H+L +K S        ++L++ YS+      A+K F    E D+
Sbjct: 901  LSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDL 960

Query: 167  VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV---I 223
            + +  MI  +AQN+  ++++  F D+    +    + ++  LRA +     E   +   +
Sbjct: 961  ISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQV 1020

Query: 224  HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV----FDENLSVLNSIAWNAMMAGYA 279
            H +A+  G+  +  V T LID Y K G + +A  +    +D +L+     +WNA+M GY 
Sbjct: 1021 HVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLA-----SWNAIMFGYI 1075

Query: 280  QQGDQSTVLELFHLLEMRGFAPDEYSF-LAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
            +       LE F L+   G   DE +   A+  + C   L  +  K I+   ++      
Sbjct: 1076 KSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINL--KQGKQIQAYAIKLGFNND 1133

Query: 339  LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            L   + ++    + G + +A  +   +   PD   W  ++S    +G  D A
Sbjct: 1134 LWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISGYIENGDEDHA 1184



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 97/195 (49%), Gaps = 7/195 (3%)

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS-----RLVDSLSVFADMRSS 195
           L+  YS+  S  +A++VFD+  +RD+V + +++  +AQ +      +++   +F  +R  
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREF 711

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
               T   ++  L+       ++    +HG+AV  G + ++ V   L++ Y K G+V  A
Sbjct: 712 GFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R +FD+ +   +++ WN M+  Y +   Q   L  F      GF PD +S L  +    N
Sbjct: 772 RLLFDK-MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD-FSNLHCVIGGVN 829

Query: 316 AGLAGESEKWIERMK 330
           + ++   ++  E++K
Sbjct: 830 SDVSNNRKRHAEQVK 844



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 145/369 (39%), Gaps = 45/369 (12%)

Query: 22  HARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           HAR + S    DR + NNLIT YSK   L  + ++F+     ++V+W ++++A++    S
Sbjct: 634 HARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADS 693

Query: 81  -----LNIF--LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                L  F    +LR    S     R   +       LS       ++H  ++K+    
Sbjct: 694 SYENVLEGFRLFGLLREFGFSI---TRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFEL 750

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F   ALV+ Y ++     A+ +FD++ ERD V +  M+  + +NS   ++L  F+   
Sbjct: 751 DLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFH 810

Query: 194 SSDV---GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            S      S ++CV G + +            +  +A+                      
Sbjct: 811 RSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAM---------------------- 848

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
                   FD+  ++    AWN  +  +   G     ++ F  L       D  + + +L
Sbjct: 849 ----KMFPFDQGSNIF---AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A   A      E+ I  + ++    P +     L++   +AG +  AE+  +  P E D
Sbjct: 902 SAAVGADDLDLGEQ-IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELD 959

Query: 371 AAVWRALLS 379
              W  ++S
Sbjct: 960 LISWNTMIS 968


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 319/557 (57%), Gaps = 5/557 (0%)

Query: 21   VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            VH  A+K    + S  +  LI  YSK   +  +  L +     ++ SW A++  +  S  
Sbjct: 1020 VHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNK 1079

Query: 80   SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            S            +    ++ TLA+  K    L +    G  + + ++KL  ++  +  S
Sbjct: 1080 SRKALEHFSLMHEMGIPIDEITLATAIKASGCLIN-LKQGKQIQAYAIKLGFNNDLWVSS 1138

Query: 140  ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
             ++  Y +     NA ++F EI   D V +  MI G+ +N     +LSV+  MR S V  
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQP 1198

Query: 200  TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
              Y  +  ++A++ L A+EQ + IH + V      +  VGT L+D Y K G V DA RVF
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF 1258

Query: 260  DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
               + V   + WNAM+ G AQ G     L LF  ++  G  PD+ +F+ VL+A  ++GL 
Sbjct: 1259 -RKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLF 1317

Query: 320  GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             E+ K+ + M   Y + P +EHY+CL+ A+GRAGR+++AE +  +MPF+  A+++RALL 
Sbjct: 1318 SEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLG 1377

Query: 380  FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
                 G A+ A ++  +L+ ++P D SAYV+++N+ +   +WD+V + R +MK + V+K+
Sbjct: 1378 ACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKD 1437

Query: 440  GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG-YVPVWDEMLHNVGDRE 498
             G SWI+VK KVH+F+  DR H +   IY K+ +LM+     G YVP  D  L +V + E
Sbjct: 1438 PGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEE 1497

Query: 499  KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
            K  AL+YHSEKLA+AFGL+S  P   T+R++KNLR+C DCH + K IS++ +REIV+RD 
Sbjct: 1498 KERALYYHSEKLAIAFGLIS-TPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDA 1556

Query: 559  NRYHRFLNGSCTCGDLW 575
            NR+H F NG+C+CGD W
Sbjct: 1557 NRFHHFRNGTCSCGDYW 1573



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 210/421 (49%), Gaps = 19/421 (4%)

Query: 21   VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +HA  +KSS A    + N+L+  YSK+ ++  + + F + P  +++SW  +IS+++ + L
Sbjct: 916  IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNL 975

Query: 80   SLN---IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA--FLFGLSLHSLSLKLSLHDK 134
             +     F  +LR       P+Q TLAS+ + C++      F  G  +H  ++K  + + 
Sbjct: 976  EMEAICTFRDLLRD---GLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIND 1032

Query: 135  PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
             F  +AL+  YS+    D A+ +     + D+  + A++ G+ ++++   +L  F+ M  
Sbjct: 1033 SFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE 1092

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
              +      ++ A++A+  L  ++Q + I  +A+  G + ++ V +G++D Y K G + +
Sbjct: 1093 MGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPN 1152

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            A  +F E +S  + +AW  M++GY + GD+   L ++HL+ + G  PDEY+F A L    
Sbjct: 1153 ALELFGE-ISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTF-ATLIKAS 1210

Query: 315  NAGLAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            +   A E  K I    V  KL+  L+H+  T L+    + G ++DA R+   M       
Sbjct: 1211 SCLTALEQGKQIHANVV--KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VV 1267

Query: 373  VWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             W A+L   A HG  D A  + + +    I P D   ++ V +  S  G + E  +    
Sbjct: 1268 FWNAMLLGLAQHGHVDEALNLFRTMQSNGIQP-DKVTFIGVLSACSHSGLFSEAYKYFDA 1326

Query: 431  M 431
            M
Sbjct: 1327 M 1327



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 154/352 (43%), Gaps = 23/352 (6%)

Query: 50   SYSLRLFNHIPSPNIVSWTALISA--HSNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLF 106
            +Y++++F      NI +W   ++   H+   ++ ++ F ++LR    S + +      + 
Sbjct: 845  AYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLR----STIGHDSVTLVII 900

Query: 107  KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166
             + A  +     G  +H+L +K S        ++L++ YS+      A+K F    E D+
Sbjct: 901  LSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDL 960

Query: 167  VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV---I 223
            + +  MI  +AQN+  ++++  F D+    +    + ++  LRA +     E   +   +
Sbjct: 961  ISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQV 1020

Query: 224  HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV----FDENLSVLNSIAWNAMMAGYA 279
            H +A+  G+  +  V T LID Y K G + +A  +    +D +L+     +WNA+M GY 
Sbjct: 1021 HVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLA-----SWNAIMFGYI 1075

Query: 280  QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL-CNAGLAGESEKWIERMKVRYKLEPG 338
            +       LE F L+   G   DE +    + A  C   L  +  K I+   ++      
Sbjct: 1076 KSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINL--KQGKQIQAYAIKLGFNND 1133

Query: 339  LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            L   + ++    + G + +A  +   +   PD   W  ++S    +G  D A
Sbjct: 1134 LWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISGYIENGDEDHA 1184



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 97/195 (49%), Gaps = 7/195 (3%)

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS-----RLVDSLSVFADMRSS 195
           L+  YS+  S  +A++VFD+  +RD+V + +++  +AQ +      +++   +F  +R  
Sbjct: 652 LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREF 711

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
               T   ++  L+       ++    +HG+AV  G + ++ V   L++ Y K G+V  A
Sbjct: 712 GFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R +FD+ +   +++ WN M+  Y +   Q   L  F      GF PD +S L  +    N
Sbjct: 772 RLLFDK-MPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD-FSNLHCVIGGVN 829

Query: 316 AGLAGESEKWIERMK 330
           + ++   ++  E++K
Sbjct: 830 SDVSNNRKRHAEQVK 844



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 145/369 (39%), Gaps = 45/369 (12%)

Query: 22  HARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           HAR + S    DR + NNLIT YSK   L  + ++F+     ++V+W ++++A++    S
Sbjct: 634 HARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADS 693

Query: 81  -----LNIF--LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                L  F    +LR    S     R   +       LS       ++H  ++K+    
Sbjct: 694 SYENVLEGFRLFGLLREFGFSI---TRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFEL 750

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F   ALV+ Y ++     A+ +FD++ ERD V +  M+  + +NS   ++L  F+   
Sbjct: 751 DLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFH 810

Query: 194 SSDVG---STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            S      S ++CV G + +            +  +A+                      
Sbjct: 811 RSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAM---------------------- 848

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
                   FD+  ++    AWN  +  +   G     ++ F  L       D  + + +L
Sbjct: 849 ----KMFPFDQGSNIF---AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A   A      E+ I  + ++    P +     L++   +AG +  AE+  +  P E D
Sbjct: 902 SAAVGADDLDLGEQ-IHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELD 959

Query: 371 AAVWRALLS 379
              W  ++S
Sbjct: 960 LISWNTMIS 968


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 322/556 (57%), Gaps = 4/556 (0%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  A+K+ +  +  +   L+  Y+K   +  +   F  IP  +++  + +IS ++ S  
Sbjct: 266 IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQ 325

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +   F   LR    S LPN+ +L+S+ + C ++     FG  +H+ ++K+      F G+
Sbjct: 326 NEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ-LDFGKQIHNHAIKIGHESDLFVGN 384

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+ FY++    D++ K+F  +R+ + V +  ++VGF+Q+    ++LSVF +M+++ +  
Sbjct: 385 ALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPC 444

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T    S  LRA A  A++     IH     S  + + ++G  LID Y K G + DA +VF
Sbjct: 445 TQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF 504

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            ++L   + I+WNA+++GYA  G  +  LELF  +       ++ +F+A+L+  C+ GL 
Sbjct: 505 -QHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLV 563

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
                  + M++ + ++P +EHYTC++  +GRAGRL DA +    +P  P A VWRALLS
Sbjct: 564 NHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 623

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IH    +     +++++I P D++ YV+++N+ +  G  D+VA +RK M++  VRK 
Sbjct: 624 SCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKV 683

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SW+E+KG++H F  G   H     I   L  L  +  R GY+P  + +LH+V   +K
Sbjct: 684 PGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQK 743

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              LW HSE+LALA+GLV   P G  +RI+KNLR C DCH +F  IS++V+REI+VRD+N
Sbjct: 744 TRMLWVHSERLALAYGLVM-TPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDIN 802

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 803 RFHHFEDGKCSCGDYW 818



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 131/308 (42%), Gaps = 40/308 (12%)

Query: 19  RIVHARALKSS---QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           R VH   ++     + D    N L+  Y K   L+ + RLF+ +P  N+VS+  L+ AH+
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 76  N-----SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
                 +  +L   L    H       NQ  L ++ K   ++  A L G  +HS + KL 
Sbjct: 139 QRGDFEAAAALFRRLRWEGHEV-----NQFVLTTMLKLAIAMDAAGLAG-GVHSCAWKLG 192

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                F GS L+  YS      +A+ VF+ I  +D V + AM+  +++N           
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEND---------- 242

Query: 191 DMRSSDVGSTMYCVSGALRAA--AELAAMEQCRV-IHGHAVVSGLDRNVIVGTGLIDGYG 247
                       C   A R A    L A+   R  IHG A+ +  D    VG  L+D Y 
Sbjct: 243 ------------CPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYA 290

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G + DAR  F E +   + I  + M++ YAQ        ELF  L      P+EYS  
Sbjct: 291 KCGDIKDARLAF-EMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLS 349

Query: 308 AVLTALCN 315
           +VL A  N
Sbjct: 350 SVLQACTN 357



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 221 RVIHGHAVV-SGLDR-NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           R +HGH V   G+ R ++     L++ YGK G ++ ARR+FD  +   N +++  ++  +
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDR-MPERNMVSFVTLVQAH 137

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEY---SFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           AQ+GD      LF  L   G   +++   + L +  A+  AGLAG       ++   +  
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             G    + LI A      + DAE +   +    DA VW A++S
Sbjct: 198 FVG----SGLIDAYSLCSLVSDAEHVFNGI-VRKDAVVWTAMVS 236


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/541 (35%), Positives = 311/541 (57%), Gaps = 3/541 (0%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           +YN +IT   +   +  + +LF+++P  + +SWT +I+  + + L               
Sbjct: 206 VYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEG 265

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
           F  +Q T  S+   C     A   G  +H+  ++    D  F GSAL+  Y + R+   A
Sbjct: 266 FCMDQFTFGSVLTACGGFL-ALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYA 324

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           + VF ++R ++V+ + AM+VG+ QN    +++ +F DM+ +++    + +   + + A L
Sbjct: 325 EAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANL 384

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           A++E+    HG A+ SGL   V V   LI  YGK G +  A ++F E + + + ++W A+
Sbjct: 385 ASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHE-MKIRDEVSWTAL 443

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           ++GYAQ G  +  + LF  +   G  PD  +F+ VL+A   AGL  +   + E M   ++
Sbjct: 444 VSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHR 503

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           + P  +HYTC+I  + RAGRLE+A+     MPF PDA  W  LLS   ++G  ++     
Sbjct: 504 ITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAA 563

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           + L  + P + ++Y++++++ +  G+WD+VA++RK M++  V+KE G SWI+ K KVH+F
Sbjct: 564 ESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIF 623

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
            A DR    ++ IY KL  L  +    GYVP    +LH+V   EK + L +HSEKLA+AF
Sbjct: 624 SADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAF 683

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+   P G  +R+VKNLR+C DCH + KYISR+ +REI+VRD  R+H F +G C+CGD 
Sbjct: 684 GLLF-IPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDF 742

Query: 575 W 575
           W
Sbjct: 743 W 743



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 187/439 (42%), Gaps = 82/439 (18%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---- 75
           +H R +++ +  +  +YNNLI  Y K   L  +  +F+HIP PN+ SW  L+SA+S    
Sbjct: 27  LHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGY 86

Query: 76  -------------------NSPLS-----------LNIFLSMLRHPTLSFLPNQRTLASL 105
                              NS LS           + ++  ML+  +++   N+ T +++
Sbjct: 87  LQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNL--NRITFSTM 144

Query: 106 FKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
                S +  F+  G  +H    K       F GS LV  Y++    ++A ++F+EI E+
Sbjct: 145 L--ILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEK 202

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG------------------ 206
           ++V Y  MI G  +   +V++  +F +M   D  S    ++G                  
Sbjct: 203 NIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMG 262

Query: 207 -------------ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
                         L A     A+++ + IH + + +    N+ VG+ L+D Y K   V 
Sbjct: 263 IEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVK 322

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A  VF   +   N I+W AM+ GY Q G     + +F  ++     PD+++  +V+++ 
Sbjct: 323 YAEAVF-RKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSC 381

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHY----TCLISAMGRAGRLEDAERIAMAMPFEP 369
            N     E  ++  +      L  GL  +      LI+  G+ G LE A ++   M    
Sbjct: 382 ANLASLEEGAQFHGQ-----ALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIR- 435

Query: 370 DAAVWRALLSFSAIHGKAD 388
           D   W AL+S  A  GKA+
Sbjct: 436 DEVSWTALVSGYAQFGKAN 454



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 33/289 (11%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RS 194
           F  + L+  YS+     + ++VFD +   DVV + +++ G+A N  + +S+ V+  M + 
Sbjct: 72  FSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKD 131

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V       S  L  ++    ++  R IHG     G    + VG+ L+D Y K G ++D
Sbjct: 132 GSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIND 191

Query: 255 ARRVFDE----NLSVLN--------------------------SIAWNAMMAGYAQQGDQ 284
           A R+F+E    N+ V N                          SI+W  ++ G  Q G  
Sbjct: 192 ANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLF 251

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              ++ F  + + GF  D+++F +VLTA C   LA +  K I    +R   +  +   + 
Sbjct: 252 KEAVDKFKEMGIEGFCMDQFTFGSVLTA-CGGFLALDEGKQIHAYIIRTDYQDNIFVGSA 310

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           L+    +   ++ AE +   M    +   W A+L     +G ++ A ++
Sbjct: 311 LLDMYCKCRNVKYAEAVFRKMR-HKNVISWTAMLVGYGQNGYSEEAVRI 358



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 33/206 (16%)

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE--- 261
           + AL+   E     Q + +H   + +  +    +   LI+ YGK G + +AR VFD    
Sbjct: 9   TAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ 68

Query: 262 -NLSVLNS--------------------------IAWNAMMAGYAQQGDQSTVLELFHLL 294
            NL   N+                          ++WN++++GYA  G  S  + +++++
Sbjct: 69  PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMM 128

Query: 295 EMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
              G    +  +F  +L    N G   +  + I     ++  +  L   + L+    + G
Sbjct: 129 LKDGSVNLNRITFSTMLILSSNRGFV-DLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTG 187

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLS 379
            + DA RI   +P E +  V+  +++
Sbjct: 188 FINDANRIFEEIP-EKNIVVYNTMIT 212



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 22  HARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---S 77
           H +AL S      ++ N LIT Y K   L ++ +LF+ +   + VSWTAL+S ++    +
Sbjct: 394 HGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKA 453

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
             ++++F +ML H     +P+  T   +   C+
Sbjct: 454 NETISLFETMLAH---GIVPDGVTFVGVLSACS 483


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/510 (38%), Positives = 296/510 (58%), Gaps = 34/510 (6%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PNQ TL+++ K CAS++ +   G   H+  +K+         +ALVH Y+R  S ++A  
Sbjct: 8   PNQFTLSTVVKACASIA-SLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGH 66

Query: 157 VFD-------------------------------EIRERDVVCYGAMIVGFAQNSRLVDS 185
           VFD                               E+ ERDVV + A+I G+AQN    +S
Sbjct: 67  VFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDES 126

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           L+VF  MR + + S  + +   L A A+LAA+E  R  H + V SG   +++VG+ L+D 
Sbjct: 127 LNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDM 186

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K+G + DA +VFD+ +   N ++WN+++ G AQ G  +  + LF  +   G  P+E S
Sbjct: 187 YAKSGSMEDACQVFDK-MPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEIS 245

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           F+ VL+A  + GL  E   +   M   Y + P + HYTC+I  +GRAG L++AE     M
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           P EPD +VW ALL    IHG  ++A ++ + L+ +       YV+++N+ +  G+WD+ A
Sbjct: 306 PVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAA 365

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           +VRK+MKDR V K+ G SWIEVK  +H F+AG+  H + ++I+  L  L  + +  GYVP
Sbjct: 366 KVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVP 425

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
             + +L +V D EK  +L +HSEKLA+AFG+++  P G T+R+ KNLR+C DCH   K+I
Sbjct: 426 NKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNP-GTTIRVAKNLRVCGDCHTVIKFI 484

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S    R+IVVRD NR+H F +G C+CGD W
Sbjct: 485 SLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 142/311 (45%), Gaps = 17/311 (5%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNI 83
           K S+     +N +IT ++++  +  +L+LF  +   ++VSWTA+I+ ++ +     SLN+
Sbjct: 70  KMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNV 129

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M +    S   ++  + S+   CA L+ A   G   H+  ++         GSALV 
Sbjct: 130 FNQMRKTGMKS---DRFIMGSVLSACADLA-ALELGRQFHAYVVQSGFALDIVVGSALVD 185

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y++  S ++A +VFD++ +R+ V + ++I G AQ+ R  D++ +F  M  + +      
Sbjct: 186 MYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEIS 245

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
             G L A +    + + R        + G+  +V   T +ID  G+AG + +A    +  
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
               +   W A++      G+      +  HLL M      E     +   L N  +   
Sbjct: 306 PVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGM------EVQIAGIYVLLSN--IYAA 357

Query: 322 SEKWIERMKVR 332
           + +W +  KVR
Sbjct: 358 AGQWDDAAKVR 368



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 123/268 (45%), Gaps = 43/268 (16%)

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M    V    + +S  ++A A +A++EQ +  H + +  G + +V+V T L+  Y + G 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA  VFD+ +S  ++  WNAM+ G+AQ  D    L+LF+ +  R    D  S+ AV+ 
Sbjct: 61  LEDAGHVFDK-MSERSTRTWNAMITGHAQNRDMKKALKLFYEMSER----DVVSWTAVIA 115

Query: 312 ALCNAGLAGESEKWIERMKV------RY-------------KLEPGLEHY---------- 342
                G   ES     +M+       R+              LE G + +          
Sbjct: 116 GYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFAL 175

Query: 343 -----TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
                + L+    ++G +EDA ++   MP + +   W ++++  A HG+ + A  + +++
Sbjct: 176 DIVVGSALVDMYAKSGSMEDACQVFDKMP-QRNEVSWNSIITGCAQHGRGNDAVLLFEQM 234

Query: 398 ID--INPYDDSAYVIVANVLSGVGRWDE 423
           +   I P ++ ++V V +  S  G  +E
Sbjct: 235 LQAGIKP-NEISFVGVLSACSHTGLVNE 261


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 308/573 (53%), Gaps = 44/573 (7%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           + L  +Y+    L YS+ LF    +P++  WTA+I  H+   L   +LN +  ML   T 
Sbjct: 13  DKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQML---TQ 69

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR------ 147
              PN  T +S+ K C         G +LHS ++KL      +  + L+  Y+R      
Sbjct: 70  GVEPNAFTFSSILKLCPIEP-----GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVS 124

Query: 148 -------------------------FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
                                        D A+ +FD + ERD VC+  MI G+ QN   
Sbjct: 125 AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMP 184

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
            ++L +F  M  +        V   L A  +L A+E  R +H +   +G+  NV VGT L
Sbjct: 185 NEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTAL 244

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           +D Y K G + DAR VFD+ +   + +AWN+M+ GYA  G     L+LF  +   G  P 
Sbjct: 245 VDMYSKCGSLEDARLVFDK-IDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPT 303

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
             +F+ +L+A  ++G   E      +MK  Y +EP +EHY C+++ +GRAG +E A  + 
Sbjct: 304 NITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELV 363

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             M  EPD  +W  LL    +HGK  +  K+ + L+D N  +   Y++++N+ + VG WD
Sbjct: 364 KNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWD 423

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
            VA +R +MKD  V+KE G S IEV  KVH FLAG   H + ++IY  L E+    +  G
Sbjct: 424 GVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHG 483

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           Y P  D +LH++G+ EK  +L  HSEKLA+AFGL++  P G T++IVKNLR+C DCHE  
Sbjct: 484 YTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQP-GTTIKIVKNLRVCADCHEVT 542

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           K IS++  R+IVVRD NR+H F+NGSC+CGD W
Sbjct: 543 KLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/573 (35%), Positives = 333/573 (58%), Gaps = 20/573 (3%)

Query: 11  PQNTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
           P+  S   + VH  A+K ++ +D  +   LI  YS++  +  +  LF    + ++V+W A
Sbjct: 430 PEGLSLSKQ-VHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNA 487

Query: 70  LISAHSNSP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF----GLSL 122
           +++ ++ S     +L +F  M +    S   +  TLA++FKTC      FLF    G  +
Sbjct: 488 MMAGYTQSHDGHKTLKLFALMHKQGERS---DDFTLATVFKTCG-----FLFAINQGKQV 539

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           H+ ++K       +  S ++  Y +      A+  FD I   D V +  MI G  +N   
Sbjct: 540 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEE 599

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
             +  VF+ MR   V    + ++   +A++ L A+EQ R IH +A+      +  VGT L
Sbjct: 600 ERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSL 659

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           +D Y K G + DA  +F + + ++N  AWNAM+ G AQ G+    L+LF  ++  G  PD
Sbjct: 660 VDMYAKCGSIDDAYCLF-KRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPD 718

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           + +F+ VL+A  ++GL  E+ K +  M   Y ++P +EHY+CL  A+GRAG ++ AE + 
Sbjct: 719 KVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLI 778

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
            +M  E  A+++R LL+   + G  +   ++  +L+++ P D SAYV+++N+ +   +WD
Sbjct: 779 ESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWD 838

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
           E+   R +MK  +V+K+ G SWIEVK K+H+F+  DR + +TE IY K+ +++ + ++ G
Sbjct: 839 EMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEG 898

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           YVP  D  L +V + EK  AL+YHSEKLA+AFGL+S  P    +R++KNLR+C DCH + 
Sbjct: 899 YVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLS-TPPSTPIRVIKNLRVCGDCHNAM 957

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           KYI++V  REIV+RD NR+HRF +G C+CGD W
Sbjct: 958 KYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 198/421 (47%), Gaps = 23/421 (5%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH  ALK       ++ N+LI  Y K     ++  +F+++   +++SW ++I+  + + L
Sbjct: 337 VHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGL 396

Query: 80  SLN---IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            +    +F+ +LR       P+Q T+ S+ K  +SL         +H  ++K++     F
Sbjct: 397 EVEAVCLFMQLLR---CGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSF 453

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +AL+  YSR R    A+ +F E    D+V + AM+ G+ Q+     +L +FA M    
Sbjct: 454 VSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQG 512

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
             S  + ++   +    L A+ Q + +H +A+ SG D ++ V +G++D Y K G +S A+
Sbjct: 513 ERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ 572

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA-LCN 315
             FD ++ V + +AW  M++G  + G++     +F  + + G  PDE++   +  A  C 
Sbjct: 573 FAFD-SIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCL 631

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA----ERIAMAMPFEPDA 371
             L    +     +K+    +P +   T L+    + G ++DA    +RI M      + 
Sbjct: 632 TALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM-----NI 684

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
             W A+L   A HG+     ++ K++  +    D    I   VLS       V+E  K M
Sbjct: 685 TAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFI--GVLSACSHSGLVSEAYKHM 742

Query: 432 K 432
           +
Sbjct: 743 R 743



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 141/290 (48%), Gaps = 11/290 (3%)

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G  +H ++LKL L       ++L++ Y + R    A+ VFD + ERD++ + ++I G A
Sbjct: 333 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIA 392

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA-AMEQCRVIHGHAVVSGLDRNV 236
           QN   V+++ +F  +    +    Y ++  L+AA+ L   +   + +H HA+      + 
Sbjct: 393 QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDS 452

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            V T LID Y +   + +A  +F+ +    + +AWNAMMAGY Q  D    L+LF L+  
Sbjct: 453 FVSTALIDAYSRNRCMKEAEILFERH--NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHK 510

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
           +G   D+++ LA +   C    A    K +    ++   +  L   + ++    + G + 
Sbjct: 511 QGERSDDFT-LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 569

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA----SKMGKRLIDINP 402
            A+    ++P  PD   W  ++S    +G+ + A    S+M  RL+ + P
Sbjct: 570 AAQFAFDSIPV-PDDVAWTTMISGCIENGEEERAFHVFSQM--RLMGVLP 616



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 14/176 (7%)

Query: 14  TSTD---PRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
           TS+D    +  HAR L      +R + NNLI+ YSK   L+Y+ R+F+ +P  ++VSW +
Sbjct: 51  TSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNS 110

Query: 70  LISAHSNSPLSL--NI-----FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
           +++A++ S   +  NI        +LR   +    ++ TL+ + K C    + +    S 
Sbjct: 111 ILAAYAQSSECVVENIQQAFLLFRILRQDVV--YTSRMTLSPMLKLCLHSGYVWA-SESF 167

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           H  + K+ L    F   ALV+ Y +F      K +F+E+  RDVV +  M+  + +
Sbjct: 168 HGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLE 223



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 6/202 (2%)

Query: 110 ASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCY 169
           A  S   + G   H+  L    + + F  + L+  YS+  S   A++VFD++ +RD+V +
Sbjct: 49  AITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSW 108

Query: 170 GAMIVGFAQNSRLV-----DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
            +++  +AQ+S  V      +  +F  +R   V ++   +S  L+       +      H
Sbjct: 109 NSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFH 168

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           G+A   GLD +  V   L++ Y K G V + + +F+E +   + + WN M+  Y + G +
Sbjct: 169 GYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEE-MPYRDVVLWNLMLKAYLEMGFK 227

Query: 285 STVLELFHLLEMRGFAPDEYSF 306
              ++L       G  P+E + 
Sbjct: 228 EEAIDLSSAFHSSGLNPNEITL 249



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 7/196 (3%)

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           L  FADM  SDV          L  A ++ ++   + +H  A+  GLD  + V   LI+ 
Sbjct: 300 LKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINM 359

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K      AR VFD N+S  + I+WN+++AG AQ G +   + LF  L   G  PD+Y+
Sbjct: 360 YCKLRKFGFARTVFD-NMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYT 418

Query: 306 FLAVLTALCN--AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
             +VL A  +   GL+   +  +  +K+    +  +   T LI A  R   +++AE +  
Sbjct: 419 MTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVS--TALIDAYSRNRCMKEAEILFE 476

Query: 364 AMPFEPDAAVWRALLS 379
              F  D   W A+++
Sbjct: 477 RHNF--DLVAWNAMMA 490


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/565 (35%), Positives = 329/565 (58%), Gaps = 15/565 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           ++VH   + S  + D  I N+++  Y+K   L  + ++F+ +   ++V+WT++I+ +S  
Sbjct: 111 KLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQD 170

Query: 76  ----NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
               ++  +L +FL M+R       PN+  L+SL K C  L  + + G  +H    K   
Sbjct: 171 GYASSATTALVLFLEMVRD---GLRPNEFALSSLVKCCGFLG-SCVDGKQIHGCCWKYGF 226

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
            +  F GS+LV  Y+R      ++ VFDE+  ++ V + A+I GFA+     ++L +F  
Sbjct: 227 QENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVK 286

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+    G+T +  S  L +++   ++EQ + +H H + SG      VG  L+  Y K+G 
Sbjct: 287 MQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGN 346

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVL 310
           + DA++VFD  + V + ++ N+M+ GYAQ G     +ELF  ++      P++ +FL+VL
Sbjct: 347 ICDAKKVFDRLVKV-DVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVL 405

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           TA  +AGL  E   + E MK +Y LEP L HYT ++   GRAG L+ A+     MP EP+
Sbjct: 406 TACSHAGLLDEGLYYFELMK-KYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPN 464

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A +W ALL  S +H   +M +   +++++++P+   A+ +++N+ +  G+W +VA+VRK 
Sbjct: 465 ATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKE 524

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MKD  ++KE   SW+E++  VH+F A D  H +   +Y     L ++ + +GYVP    +
Sbjct: 525 MKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHV 584

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
              V  +EK   L YHSEKLALAF L++  P G  +RI+KN+R+C DCH + KY+S VV+
Sbjct: 585 HVFVDQQEKELNLQYHSEKLALAFALLNTKP-GSVIRIMKNIRVCGDCHSAIKYVSLVVK 643

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REI+VRD NR+H F +GSC+C D W
Sbjct: 644 REIIVRDTNRFHHFRDGSCSCRDYW 668



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 6/186 (3%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L+    L  ++Q +++H H + S    ++++   ++  Y K G +  AR+VFDE + V +
Sbjct: 98  LKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDE-MCVKD 156

Query: 268 SIAWNAMMAGYAQQG---DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
            + W +M+ GY+Q G     +T L LF  +   G  P+E++ L+ L   C    +    K
Sbjct: 157 VVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFA-LSSLVKCCGFLGSCVDGK 215

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
            I     +Y  +  +   + L+    R G L ++ R+        +   W AL+S  A  
Sbjct: 216 QIHGCCWKYGFQENVFVGSSLVDMYARCGELRES-RLVFDELESKNEVSWNALISGFARK 274

Query: 385 GKADMA 390
           G+ + A
Sbjct: 275 GEGEEA 280


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/560 (33%), Positives = 324/560 (57%), Gaps = 8/560 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +H++A++     DR +   LI  Y+K ++   +  + ++F+ I   N+ SWTA+I+ +  
Sbjct: 293 LHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQ 352

Query: 77  SPLSLNIFLSMLRHPTLS-FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
                   L + R   L+  +PN  T +S  K CA+L+ A   G  + + ++KL      
Sbjct: 353 KGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLA-ALRIGEQVFTHAVKLGFSSVN 411

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              ++L+  Y+R    D+A+K FD + E++++ Y  +I  +A+N    ++L +F ++   
Sbjct: 412 CVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQ 471

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +G++ +  +  L  AA +  + +   IH   + SGL  N  V   LI  Y + G +  A
Sbjct: 472 GMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESA 531

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VF E++   N I+W +++ G+A+ G  +  LELFH +   G  P+E +++AVL+A  +
Sbjct: 532 FQVF-EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSH 590

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            GL  E  K  + M   + + P +EHY C++  +GR+G L +A +   +MP++ DA VWR
Sbjct: 591 VGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWR 650

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
             L    +HG  ++     K +I+  P+D +AY++++N+ + + +WDEV+ +RK MK++ 
Sbjct: 651 TFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKX 710

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           + KE G SW+EV+ KVH F  GD  H +  +IY +L  L  + ++LGYVP  D +LH+V 
Sbjct: 711 LIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVE 770

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + +K + L+ HSEK+A+AFGL+S   + K +R+ KNLRIC DCH + KYIS    REI+V
Sbjct: 771 EEQKEKLLFQHSEKIAVAFGLIS-TSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIV 829

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H   +G C+C + W
Sbjct: 830 RDANRFHHIKDGRCSCNEYW 849



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 200/434 (46%), Gaps = 26/434 (5%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNS 77
           +VH +  +S  Q D    N+LI+ YSK      +  +F  + S  +++SW+A++S  +N+
Sbjct: 87  LVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANN 146

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            +     L+ +      + PN+   A+  + C++     + G S+    +K        C
Sbjct: 147 NMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSV-GDSIFGFVIKTGYLQSDVC 205

Query: 138 -GSALVHFYSRFRSP-DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            G  L+  + + R    +A KVF+++ ER+ V +  MI    Q     +++ +F DM  S
Sbjct: 206 VGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFS 265

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA---GIV 252
                 + +SG + A A +  +   + +H  A+  GL  +  VG  LI+ Y K    G +
Sbjct: 266 GYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSM 325

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVLT 311
             AR++FD+ L   N  +W AM+ GY Q+G      L+LF  + +    P+ ++F + L 
Sbjct: 326 CAARKIFDQILD-HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLK 384

Query: 312 ALCN-AGLAGESEKWIERMKVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMP 366
           A  N A L    + +   +K+      G     C    LIS   R+GR++DA R A  + 
Sbjct: 385 ACANLAALRIGEQVFTHAVKL------GFSSVNCVANSLISMYARSGRIDDA-RKAFDIL 437

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
           FE +   +  ++   A +  ++ A ++   + D      SA+   A++LSG      + +
Sbjct: 438 FEKNLISYNTVIDAYAKNLNSEEALELFNEIED-QGMGASAFTF-ASLLSGAASIGTIGK 495

Query: 427 VRKVMKDRRVRKEG 440
             ++    RV K G
Sbjct: 496 GEQI--HARVIKSG 507


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/574 (35%), Positives = 340/574 (59%), Gaps = 15/574 (2%)

Query: 11  PQNTS-TDPRIVHARALKSS-QADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIV 65
           P+ TS  + + + A ++K+  Q D  I   LI + +++     + Y+ +LF  IP P+IV
Sbjct: 34  PKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIV 93

Query: 66  SWTALISAHS--NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
            + ++   +S  N+PL ++++F+  L +   + LP+  T  SL K C  ++ AF  G  L
Sbjct: 94  LFNSMFRGYSRSNAPLKAISLFIKALNY---NLLPDDYTFPSLLKACV-VAKAFQQGKQL 149

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           H L++KL L++ P+    L++ Y+     D A++VFDEI E  VV Y A+I G+A++SR 
Sbjct: 150 HCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRP 209

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
            ++LS+F  +++  +      V   L + A L A++  + IH +   +GLD+ V V T L
Sbjct: 210 NEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTAL 269

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           ID Y K G +  A  VF E++SV ++ AW+AM+  YA  G    V+ +F  +      PD
Sbjct: 270 IDMYAKCGSLDGAISVF-ESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPD 328

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           E +FL +L A  + GL  E  ++   M   Y + PG++HY C++  +GRAG L +A +  
Sbjct: 329 EITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFI 388

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             +P +P   +WR LLS  + HG  ++A ++  ++++++      YVI++N+ +  G+W+
Sbjct: 389 DELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWE 448

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
           +V  +RK+M  +   K  G S IEV   VH F +GD +H  +  ++  L EL++E + +G
Sbjct: 449 DVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVG 508

Query: 483 YVPVWDEMLH-NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           YVP    ++H ++ D EK   L YHSEKLA++FGL++  P G T+R+VKNLR+C DCH +
Sbjct: 509 YVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLN-TPPGTTIRVVKNLRVCGDCHSA 567

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            K IS +++REI++RDV R+H F +G C+CGD W
Sbjct: 568 AKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/567 (34%), Positives = 325/567 (57%), Gaps = 11/567 (1%)

Query: 14  TSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           +S   R  HA+ ++   + D    N LI  YSK +L+  + + FN +P  ++VSW  +I 
Sbjct: 58  SSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIG 117

Query: 73  AHSNSPL---SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           A + +     +L + + M R  T    P N+ T++S+   CA    A L  + LH+ S+K
Sbjct: 118 ALTQNAEDREALKLLIQMQREGT----PFNEFTISSVLCNCA-FKCAILECMQLHAFSIK 172

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
            ++    F G+AL+H Y++  S  +A ++F+ + E++ V + +M+ G+ QN    ++L +
Sbjct: 173 AAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLI 232

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           F + +        + +S A+ A A LA + + + +H  +  SG   N+ V + LID Y K
Sbjct: 233 FRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAK 292

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G + +A  VF   L V + + WNAM++G+A+       + LF  ++ RGF PD+ +++ 
Sbjct: 293 CGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVC 352

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           VL A  + GL  E +K+ + M  ++ L P + HY+C+I  +GRAG +  A  +   MPF 
Sbjct: 353 VLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFN 412

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
             +++W +LL+   I+G  + A    K L ++ P +   ++++AN+ +   +WDEVA  R
Sbjct: 413 ATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVARAR 472

Query: 429 KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
           K++++  VRKE G SWIE+K K+H F  G+R H + +DIY KL  L+ E ++L Y     
Sbjct: 473 KLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTS 532

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
             LH+V +  K+  L +HSEKLA+ FGL+   PR   +RI+KNLRIC DCH   K +S+ 
Sbjct: 533 NDLHDVEENRKQMLLRHHSEKLAITFGLMC-LPRDIPIRIIKNLRICGDCHTFMKLVSKS 591

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
             REI+VRD NR+H F +G C+CG+ W
Sbjct: 592 TSREIIVRDTNRFHHFKDGFCSCGEFW 618


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 320/561 (57%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   +K+ + +D  I   L+  Y+K  LL  + ++F+ IP  ++V W ALIS  S+ 
Sbjct: 323 RQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHG 382

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                +L++F  M +     F  N+ TLA++ K+ ASL  A      +H+L+ KL     
Sbjct: 383 AQHAEALSLFCRMRKE---GFDVNRTTLAAVLKSTASLE-AISDTRQVHALAEKLGFLSD 438

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + L+  Y +    + A +VF++    D++ + +MI   +Q     D++ +F +M  
Sbjct: 439 SHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLR 498

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +    + +S  L A A L+A EQ + +H H +      +V  G  L+  Y K G + D
Sbjct: 499 KGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIED 558

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F   L     ++W+AM+ G AQ G     L++FH +     +P+  +  +VL A  
Sbjct: 559 ADLAF-SGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACN 617

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E++++   MK  + +E   EHY C+I  +GRAG+L+DA  +  +MPF+ +AAVW
Sbjct: 618 HAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVW 677

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL+ S +H   ++     ++L  + P     +V++AN  +  G WD+VA+VRK+MKD 
Sbjct: 678 GALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDS 737

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           +V+KE   SW+E+K KVH F+ GD+ H R  DIY KL EL +   + GYVP  +  LH+V
Sbjct: 738 KVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDV 797

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK   L +HSE+LA+AF L+S  P G  +R+ KNLRICRDCH +FK+IS +V REI+
Sbjct: 798 DKNEKELLLSHHSERLAVAFALIS-TPAGAPIRVKKNLRICRDCHAAFKFISDIVSREII 856

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD+NR+H F +G+C+C D W
Sbjct: 857 IRDINRFHHFRDGACSCRDYW 877



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 188/391 (48%), Gaps = 15/391 (3%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--- 73
           R VHA  +++   D+ ++  N L+  YSK   +  +  +F  +P  ++VSW A IS    
Sbjct: 222 RKVHAMVIRTGY-DKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVL 280

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           H +   +L + L M    +   +PN  TL+S+ K CA  S AF  G  +H   +K +   
Sbjct: 281 HGHDQHALELLLQM---KSSGLVPNVFTLSSILKACAG-SGAFNLGRQIHGFMVKANADS 336

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             +    LV  Y++    D+AKKVFD I +RD+V + A+I G +  ++  ++LS+F  MR
Sbjct: 337 DNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMR 396

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
                     ++  L++ A L A+   R +H  A   G   +  V  GLID Y K   ++
Sbjct: 397 KEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLN 456

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A RVF+++ S  + IA+ +M+   +Q       ++LF  +  +G  PD +   ++L A 
Sbjct: 457 YAYRVFEKHGS-YDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNA- 514

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           C +  A E  K +    ++ +    +     L+    + G +EDA+     +P E     
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLP-EKGVVS 573

Query: 374 WRALLSFSAIHGKADMASKMGKRLID--INP 402
           W A++   A HG    A  +  R++D  I+P
Sbjct: 574 WSAMIGGLAQHGHGKRALDVFHRMVDEHISP 604



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 193/415 (46%), Gaps = 19/415 (4%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           +HA  LKS        N+L++ YSK  L   + R+F+ IP P  VSW++L++A+SN+ + 
Sbjct: 26  IHAHLLKSGLF-AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMP 84

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
            +   +     + S   N+  L  + K CA  +    FG  LH+L++   L    F  +A
Sbjct: 85  RDALGAFRSMRSCSVRCNEFVLPVVLK-CAPDAG---FGTQLHALAMATGLGGDIFVANA 140

Query: 141 LVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           LV  Y  F   D A+ VFDE   ER+ V +  ++  + +N R   ++ VF +M    V  
Sbjct: 141 LVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQP 200

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             +  S  + A      +E  R +H   + +G D++V     L+D Y K G +  A  VF
Sbjct: 201 NEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVF 260

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            + +   + ++WNA ++G    G     LEL   ++  G  P+ ++  ++L A   +G A
Sbjct: 261 GK-VPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSG-A 318

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL- 378
               + I    V+   +        L+    + G L+DA+++   +P + D  +W AL+ 
Sbjct: 319 FNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIP-QRDLVLWNALIS 377

Query: 379 --SFSAIHGKA-DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             S  A H +A  +  +M K   D+N         +A VL      + +++ R+V
Sbjct: 378 GCSHGAQHAEALSLFCRMRKEGFDVN------RTTLAAVLKSTASLEAISDTRQV 426


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/607 (34%), Positives = 330/607 (54%), Gaps = 39/607 (6%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           LN    P+  +   RI    + +  + D  + N LIT Y K N +  +   F+ +   ++
Sbjct: 287 LNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDV 346

Query: 65  VSWTALISAHSNSPL----SLN-IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119
           +SW+A+I+ ++ S      SL+ +F  + R       PN+ T  S+ K C S+  A   G
Sbjct: 347 ISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKAC-SVHGALEQG 405

Query: 120 LSLHSLSLKL------SLHDKPF-----CGS--------------------ALVHFYSRF 148
             +H+   K+      SL    F     CGS                    +L+  Y + 
Sbjct: 406 RQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKC 465

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               +A+KVF E+  R+VV +  MI G+AQ+  +     + + M+          +   L
Sbjct: 466 GDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISIL 525

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A   L+A+E+ +++H  AV  GL+ + +V T LI  Y K G V++AR VFD+ +S  ++
Sbjct: 526 EACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDK-ISNRDT 584

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           +AWNAM+AGY Q G     ++LF  +      P+E +F AV++A   AGL  E  +    
Sbjct: 585 VAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRI 644

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M+  ++++PG +HY C++  +GRAGRL++AE     MP EPD +VW ALL     H    
Sbjct: 645 MQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQ 704

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +A      ++ + P + S YV ++N+ +  GRWD+  +VRKVM D+ ++K+ G S IE+ 
Sbjct: 705 LAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEID 764

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
           G++H F+A D  H   + I+ +L  L +E +  GY P    +LH+V + +K  AL +HSE
Sbjct: 765 GRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSE 824

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           KLA+A+GL+   P G  +RI+KNLR+C DCH + K+IS++ +REIV RD NR+H F NG+
Sbjct: 825 KLAIAYGLLK-TPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGT 883

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 884 CSCGDFW 890



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 195/455 (42%), Gaps = 47/455 (10%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLS 86
           + D ++   LIT YSK   +S +  +F  +   N+VSWTA+I A   H     +  ++  
Sbjct: 211 ETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEK 270

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           ML+       PN  T  SL  +C +   A   G  +HS   +  L       +AL+  Y 
Sbjct: 271 MLQ---AGISPNAVTFVSLLNSCNT-PEALNRGRRIHSHISERGLETDVVVANALITMYC 326

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN-----SRLVDSLSVFADMRSSDVGSTM 201
           +     +A++ FD + +RDV+ + AMI G+AQ+       L +   +   MR   V    
Sbjct: 327 KCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNK 386

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLD---------------------------- 233
                 L+A +   A+EQ R IH      G +                            
Sbjct: 387 VTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSK 446

Query: 234 ---RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
              +NV+    L+  Y K G ++ A +VF E +S  N ++WN M+AGYAQ GD + V EL
Sbjct: 447 MENKNVVAWASLLTMYIKCGDLTSAEKVFSE-MSTRNVVSWNLMIAGYAQSGDIAKVFEL 505

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
              +++ GF PD  + +++L A C A  A E  K +    V+  LE      T LI    
Sbjct: 506 LSSMKVEGFQPDRVTIISILEA-CGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYS 564

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYV 409
           + G + +A R         D   W A+L+    HG    A  + KR++    P ++  + 
Sbjct: 565 KCGEVTEA-RTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFT 623

Query: 410 IVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSW 444
            V +     G   E  E+ ++M++    K G + +
Sbjct: 624 AVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHY 658



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 192/385 (49%), Gaps = 14/385 (3%)

Query: 17  DPRIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D ++VH +  +   A D  + N+LI  YSK   ++   ++F  +   ++V+W+++I+A++
Sbjct: 96  DGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYA 155

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +      F +  R    +  PN+ T  S+ K C + S        +H++     +    
Sbjct: 156 GNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYS-MLEKAREIHTVVKASGMETDV 214

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +AL+  YS+      A ++F +++ER+VV + A+I   AQ+ +L ++  ++  M  +
Sbjct: 215 AVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQA 274

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +          L +     A+ + R IH H    GL+ +V+V   LI  Y K   + DA
Sbjct: 275 GISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDA 334

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQG--DQSTVLELFHLLE-MR--GFAPDEYSFLAVL 310
           R  FD  +S  + I+W+AM+AGYAQ G  D+ ++ E+F LLE MR  G  P++ +F+++L
Sbjct: 335 RETFD-RMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSIL 393

Query: 311 TALCNAGLAGESEKWI--ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
            A C+   A E  + I  E  KV ++ +  L+  T + +   + G + +AE++   M   
Sbjct: 394 KA-CSVHGALEQGRQIHAEISKVGFESDRSLQ--TAIFNMYAKCGSIYEAEQVFSKME-N 449

Query: 369 PDAAVWRALLSFSAIHGKADMASKM 393
            +   W +LL+     G    A K+
Sbjct: 450 KNVVAWASLLTMYIKCGDLTSAEKV 474



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 135/297 (45%), Gaps = 4/297 (1%)

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
            L N  T   + + CA L   F  G  +H    +L L    + G++L++FYS+F    + 
Sbjct: 74  LLVNSNTYGCIIEHCAKLRR-FEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASV 132

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           ++VF  +  RDVV + +MI  +A N+    +   F  M+ +++          L+A    
Sbjct: 133 EQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNY 192

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           + +E+ R IH     SG++ +V V T LI  Y K G +S A  +F + +   N ++W A+
Sbjct: 193 SMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIF-QKMKERNVVSWTAI 251

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           +   AQ    +   EL+  +   G +P+  +F+++L + CN   A    + I        
Sbjct: 252 IQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNS-CNTPEALNRGRRIHSHISERG 310

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           LE  +     LI+   +   ++DA      M  + D   W A+++  A  G  D  S
Sbjct: 311 LETDVVVANALITMYCKCNCIQDARETFDRMS-KRDVISWSAMIAGYAQSGYQDKES 366


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 324/562 (57%), Gaps = 14/562 (2%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           VH   +K+     S+Y    LI  Y+K + L  +  +F+ +P  N+VSWTA+ISA+S   
Sbjct: 112 VHTHMIKTCYLP-SVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRG 170

Query: 79  LS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +   LN+F+ MLR  T    PN  T A++  +C   S  F  G  +HS+++K +     
Sbjct: 171 FAFEALNLFVEMLRSDTE---PNHFTFATILTSCYG-SLGFETGRQIHSIAIKRNYESHM 226

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F GS+L+  Y++     +A  VF  + ERDVV   A+I G+AQ     ++L +F  ++  
Sbjct: 227 FVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIE 286

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            + S     +  L A + LAA+   + +H H + SG    V++   LID Y K G V  A
Sbjct: 287 GMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYA 346

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALC 314
           RR+FD ++     I+WNAM+ GY++ G    VLELF L+ E     PD  ++LAVL+   
Sbjct: 347 RRIFD-SMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS 405

Query: 315 NAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           +  L     E +   +  +  +EP + HY C++  +GRAGR+E+A      MPF P AA+
Sbjct: 406 HGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAI 465

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W +LL    +H   ++   +G++L+++ P +   YVI++N+ +  G+W+++  +R +M++
Sbjct: 466 WGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQE 525

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           + V KE GRSW+E+   VH F A D  H R E++  K+ EL  + +  GYVP    +L++
Sbjct: 526 KAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYD 585

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + +K + L  HSEKLALAFGL++  P G T+R++KNLRIC DCH   K++SR+  R +
Sbjct: 586 VDEEQKEKVLLGHSEKLALAFGLIA-TPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTV 644

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD NR+H  + G C+CGD W
Sbjct: 645 ILRDKNRFHNIVGGVCSCGDYW 666



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 153/318 (48%), Gaps = 13/318 (4%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           ++   C S   A   G  +H+  +K       +  + L+  Y++     +A+++FDE+ +
Sbjct: 95  TILNECVS-QRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQ 153

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           ++VV + AMI  ++Q     ++L++F +M  SD     +  +  L +       E  R I
Sbjct: 154 KNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQI 213

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H  A+    + ++ VG+ L+D Y K+G + DA  VF   L   + +A  A+++GYAQ G 
Sbjct: 214 HSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVF-HCLPERDVVACTAIISGYAQMGL 272

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               L+LF  L++ G   +  ++ +VLTAL  +GLA  +     +    + L  G   Y 
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYASVLTAL--SGLAALNHG---KQVHSHVLRSGQYSYV 327

Query: 344 CLISAM----GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
            L++++     + G +  A RI  +MP E     W A+L   + HG A    ++ K + +
Sbjct: 328 VLLNSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAMLVGYSKHGMAREVLELFKLMRE 386

Query: 400 INPYDDSAYVIVANVLSG 417
            N     +   +A VLSG
Sbjct: 387 ENKVKPDSITYLA-VLSG 403


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 319/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   +K+ + +D  I   L+  Y+K  LL  + ++F  IP  +++ W ALIS  S+ 
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHG 384

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                SL++F  M +  +     N+ TLA++ K+ ASL  A      +H+L+ K+     
Sbjct: 385 GCHGESLSLFCRMRKEGSD---INRTTLAAVLKSTASLE-AISDTTQVHALAEKIGFLSD 440

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + L+  Y +      A KVF+E    +++ + +MI   +Q     D++ +F +M  
Sbjct: 441 SHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLR 500

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +    + +S  L A A L+A EQ + +H H +      +V  G  L+  Y K G + D
Sbjct: 501 KGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIED 560

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F   L     ++W+AM+ G AQ G     L++F  +     AP+  +  +VL A  
Sbjct: 561 ADLAF-SGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACN 619

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E++ +   MK  + ++   EHY+C+I  +GRAG+L+DA  +  +MPFE +AAVW
Sbjct: 620 HAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVW 679

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL+ S +H   ++     ++L  + P     +V++AN  +  G WDEVA+VRK+MKD 
Sbjct: 680 GALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDS 739

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           +V+KE   SW+E+K +VH F+ GD+ H R  DIY KL EL +   + GYVP  +  LH+V
Sbjct: 740 KVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDV 799

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK   L +HSE+LA+AF L+S  P G  +R+ KNLRICRDCH +FK+IS++V REI+
Sbjct: 800 DKSEKELLLSHHSERLAVAFALIS-TPAGAPIRVKKNLRICRDCHVAFKFISKIVSREII 858

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD+NR+H F +G+C+CGD W
Sbjct: 859 IRDINRFHHFSDGACSCGDYW 879



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 185/391 (47%), Gaps = 21/391 (5%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--- 73
           R VHA  +++   D+ ++  N L+  YSK   +  +  +F  +P  ++VSW A IS    
Sbjct: 222 RKVHAMVVRTGY-DKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVL 280

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL-SLHSLSLKLSLH 132
           H +   +L + L M    +   +PN  TL+S+ K CA            +H   +K    
Sbjct: 281 HGHDQHALELLLQM---KSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACAD 337

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              + G ALV  Y+++   D+A+KVF+ I  +D++ + A+I G +      +SLS+F  M
Sbjct: 338 SDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRM 397

Query: 193 R--SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           R   SD+  T   ++  L++ A L A+     +H  A   G   +  V  GLID Y K  
Sbjct: 398 RKEGSDINRTT--LAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCN 455

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A +VF+E+ S  N IA+ +M+   +Q       ++LF  +  +G  PD +   ++L
Sbjct: 456 CLRYANKVFEEH-SSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLL 514

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A C +  A E  K +    ++ K    +     L+    + G +EDA+   +A    PD
Sbjct: 515 NA-CASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDAD---LAFSGLPD 570

Query: 371 AAV--WRALLSFSAIHGKADMASKMGKRLID 399
             V  W A++   A HG    A  + +R++D
Sbjct: 571 KGVVSWSAMIGGLAQHGHGKRALDVFRRMVD 601



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 178/387 (45%), Gaps = 13/387 (3%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           +HA  LKS     +  N+L++ YSK  L   + R+F+  P P  VSW++L++A+SN+ L 
Sbjct: 26  IHAHLLKSGLL-HAFRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALP 84

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
                +           N+  L  + K CA  +     G+ +H++++   L    F  +A
Sbjct: 85  REALAAFRAMRARGVRCNEFALPIVLK-CAPDAG---LGVQVHAVAVSTGLSGDIFVANA 140

Query: 141 LVHFYSRFRSPDNAKKVFDE-IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           LV  Y  F   D A++VFDE  R+R+ V +  M+  F +N R  D++ +F +M  S V  
Sbjct: 141 LVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRP 200

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             +  S  + A      +E  R +H   V +G D++V     L+D Y K G +  A  VF
Sbjct: 201 NEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVF 260

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL-TALCNAGL 318
            + +   + ++WNA ++G    G     LEL   ++  G  P+ ++  ++L         
Sbjct: 261 GK-VPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAG 319

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           A    + I    ++   +        L+    + G L+DA ++   +P   D  +W AL+
Sbjct: 320 AFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIP-RKDLLLWNALI 378

Query: 379 ---SFSAIHGKA-DMASKMGKRLIDIN 401
              S    HG++  +  +M K   DIN
Sbjct: 379 SGCSHGGCHGESLSLFCRMRKEGSDIN 405



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 171/402 (42%), Gaps = 45/402 (11%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISA---HS 75
           VHA A+ +    D  + N L+  Y     +  + R+F+      N VSW  ++SA   + 
Sbjct: 122 VHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKND 181

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               ++ +F  M+        PN+   + +   C   S     G  +H++ ++       
Sbjct: 182 RCSDAVELFGEMVWS---GVRPNEFGFSCVVNACTG-SRDLEAGRKVHAMVVRTGYDKDV 237

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  +ALV  YS+      A  VF ++ + DVV + A I G   +     +L +   M+SS
Sbjct: 238 FTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 196 DVGSTMYCVSGALR--AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
            +   ++ +S  L+  A A   A    R IHG  + +  D +  +G  L+D Y K G++ 
Sbjct: 298 GLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLD 357

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DAR+VF E +   + + WNA+++G +  G     L LF  +   G   +  +  AVL + 
Sbjct: 358 DARKVF-EWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKST 416

Query: 314 CN----------------AGLAGES-------EKWIERMKVRYKLEPGLEH-------YT 343
            +                 G   +S       + + +   +RY  +   EH       +T
Sbjct: 417 ASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFT 476

Query: 344 CLISAMGRAGRLEDAERIAMAM---PFEPDAAVWRALLSFSA 382
            +I+A+ +    EDA ++ M M     EPD  V  +LL+  A
Sbjct: 477 SMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACA 518


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/544 (35%), Positives = 315/544 (57%), Gaps = 11/544 (2%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N LI  Y K+  L  + +LF+ +P+ N+ +W A+++  +NS L   SL  F +M R   
Sbjct: 3   WNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRRE-- 60

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYSRFRSP 151
               P++  L SLF+ CA L    + G  +H+  ++  L D+  C GS+L H Y R    
Sbjct: 61  -GMQPDEYGLGSLFRCCAGLRDV-VSGRQVHAYVVRSGL-DRDMCVGSSLAHMYMRCGFL 117

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
            + +     +   ++V     I G  QN     +L  F  MR + V +       A+ + 
Sbjct: 118 RDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSC 177

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           ++LAA+ Q + IH  A+ +G+D+ V V T L+  Y + G + D+ RV  E  S  + +  
Sbjct: 178 SDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLE-YSGTDLVLC 236

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           +AM++ Y   G     + LF  +   G  P+E +FL +L A  ++GL  E     E M  
Sbjct: 237 SAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTK 296

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y L+P ++HYTC++  +GR+G L +AE + ++MP +PD  +W+ LLS      K DMA 
Sbjct: 297 TYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAE 356

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           ++ +R+I+++P+D ++YV+++N+ +   RW++V++VR+ M+++ VRKE G SW+E+KG++
Sbjct: 357 RIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQI 416

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F  GD  H R  +I   L E+M    + GY P    + H++ D EK  +L +HSEKLA
Sbjct: 417 HQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLA 476

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AF  +S  P G  +R++KNLR+C DCH + K +S+V+ REIVVRDV+R+H F +G C+C
Sbjct: 477 IAFAFLS-LPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSC 535

Query: 572 GDLW 575
           GD W
Sbjct: 536 GDYW 539


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 321/559 (57%), Gaps = 13/559 (2%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR L      R++  +N LI  Y K+  L  + +LF+ +P+ N+ +W A+++  +NS L 
Sbjct: 96  ARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLN 155

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             SL  F +M R       P++  L SLF+ CA L    + G  +H+  ++  L D+  C
Sbjct: 156 EESLGFFFAMRRE---GMQPDEYGLGSLFRCCAGLRDV-VSGRQVHAYVVRSGL-DRDMC 210

Query: 138 -GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GS+L H Y R     + +     +   ++V     I G  QN     +L  F  MR + 
Sbjct: 211 VGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAG 270

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V +       A+ + ++LAA+ Q + IH  A+ +G+D+ V V T L+  Y + G + D+ 
Sbjct: 271 VEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSE 330

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RV  E  S  + +  +AM++ Y   G     + LF  +   G  P+E +FL +L A  ++
Sbjct: 331 RVCLE-YSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHS 389

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E     E M   Y L+P ++HYTC++  +GR+G L +AE + ++MP +PD  +W+ 
Sbjct: 390 GLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKT 449

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LLS      K DMA ++ +R+I+++P+D ++YV+++N+ +   RW++V++VR+ M+++ V
Sbjct: 450 LLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNV 509

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           RKE G SW+E+KG++H F  GD  H R  +I   L E+M    + GY P    + H++ D
Sbjct: 510 RKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMED 569

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK  +L +HSEKLA+AF  +S  P G  +R++KNLR+C DCH + K +S+V+ REIVVR
Sbjct: 570 EEKEVSLAHHSEKLAIAFAFLS-LPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVR 628

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           DV+R+H F +G C+CGD W
Sbjct: 629 DVSRFHHFKDGKCSCGDYW 647



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           L+  Y   G    AR +F E +   N ++WN ++ GY + GD  T  +LF  +  R  A 
Sbjct: 83  LLLAYADLGDFPTARGLF-ERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVA- 140

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
              ++ A++  L N+GL  ES  +   M+ R  ++P
Sbjct: 141 ---TWNAMVAGLTNSGLNEESLGFFFAMR-REGMQP 172


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 312/559 (55%), Gaps = 10/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
           +H   +K     D  +  +L+  Y+K   L  + ++F+ IP  N+VSWTA+IS +     
Sbjct: 134 IHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGK 193

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++++F  +L    ++  P+  T+  +   C  L      G  +H   +++ +    F
Sbjct: 194 FREAIDMFRRLLE---MNLAPDSFTIVRVLSACTQLGD-LNSGEWIHKCIMEMGMVRNVF 249

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G++LV  Y++  + + A+ VFD + E+D+V +GAMI G+A N    +++ +F  M+  +
Sbjct: 250 VGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQREN 309

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    Y V G L A A L A+E    + G    +    N ++GT LID Y K G +S A 
Sbjct: 310 VKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAW 369

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF + +   + + WNA+++G A  G       LF  +E  G  PD  +F+ +L    +A
Sbjct: 370 EVF-KGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHA 428

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E  ++   M   + L P +EHY C++  +GRAG L++A ++   MP E +A VW A
Sbjct: 429 GLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGA 488

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    IH    +A    K+LI++ P++   YV+++N+ S   +WDE A+VR  M ++R+
Sbjct: 489 LLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRI 548

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G SWIEV G VH FL GD+ H  +E IY KL EL ++ +  GYVP  D +L ++ +
Sbjct: 549 QKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEE 608

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK   L  HSEKLA+AFGL+S  P    +R+VKNLR+C DCH + K IS +  REI VR
Sbjct: 609 EEKEHFLGCHSEKLAIAFGLISATPTA-VIRVVKNLRVCGDCHMAIKLISSITGREITVR 667

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F  GSC+C D W
Sbjct: 668 DNNRFHCFREGSCSCNDYW 686



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 167/346 (48%), Gaps = 11/346 (3%)

Query: 42  NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH-SNSPLSLNI-FLSMLRHPTLSFLPNQ 99
           ++S +N   Y+  LF+ I  PNI  W  +I    SN      I F  ++R     FLPN 
Sbjct: 58  DFSDTN---YTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSE--GFLPNN 112

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
            T   + K CA L    L G+ +H+L +K       F  ++LV  Y++    ++A KVFD
Sbjct: 113 FTFPFVLKACARLLDLQL-GVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFD 171

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
           +I +++VV + A+I G+    +  +++ +F  +   ++    + +   L A  +L  +  
Sbjct: 172 DIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNS 231

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
              IH   +  G+ RNV VGT L+D Y K G +  AR VFD  +   + ++W AM+ GYA
Sbjct: 232 GEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFD-GMPEKDIVSWGAMIQGYA 290

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
             G     ++LF  ++     PD Y+ + VL+A    G A E  +W+  +  R +     
Sbjct: 291 LNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLG-ALELGEWVSGLVDRNEFLYNP 349

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
              T LI    + G +  A  +   M  E D  VW A++S  A++G
Sbjct: 350 VLGTALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISGLAMNG 394


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 322/564 (57%), Gaps = 17/564 (3%)

Query: 19  RIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA    S+  D  +  N I N Y+K   L  +  LF+ +P+ ++VSWT LIS +S S
Sbjct: 125 RAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQS 184

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFK---TCASLSHAFLFGLSLHSLSLKLSL 131
                +L +F  ML    L F PN+ TL+SL K   T  S  H    G  LH+ SLK   
Sbjct: 185 GQASEALALFPKMLH---LGFQPNEFTLSSLLKASGTGPSDHH----GRQLHAFSLKYGY 237

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                 GS+L+  Y+R+     AK +F+ +  ++VV + A+I G A+       + +F  
Sbjct: 238 DMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQ 297

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M       T +  S    A A   ++EQ + +H H + SG      +G  LID Y K+G 
Sbjct: 298 MLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGS 357

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA++VF   L   + ++WN++++GYAQ G  +  L+LF  +      P+E +FL+VLT
Sbjct: 358 IKDAKKVF-RRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLT 416

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  ++GL  E + + E MK ++K+E  + H+  ++  +GRAGRL +A +    MP +P A
Sbjct: 417 ACSHSGLLDEGQYYFELMK-KHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTA 475

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           AVW ALL    +H   D+     +++ +++P+D   +V+++N+ +  GR  + A+VRK+M
Sbjct: 476 AVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMM 535

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           K+  V+KE   SW+E++ +VHVF+A D  H   E+I     ++  + + +GYVP    +L
Sbjct: 536 KESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVL 595

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
             +  +++   L YHSEKLALAF ++   P G T+RI KN+RIC DCH +FK+ SRV+ R
Sbjct: 596 FFMNQQDRELKLQYHSEKLALAFAVLK-TPPGLTIRIKKNIRICGDCHSAFKFASRVLGR 654

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD NR+H FL+G C+C D W
Sbjct: 655 EIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 179/347 (51%), Gaps = 8/347 (2%)

Query: 96  LPNQRTLAS-LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
           L  +RTL S +   C  L      G ++H+     +  D     + +++ Y++  S + A
Sbjct: 101 LEPERTLYSKMLNKCTYLR-KLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           + +FD++  +D+V +  +I G++Q+ +  ++L++F  M         + +S  L+A+   
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            +    R +H  ++  G D NV VG+ L+D Y +   + +A+ +F+ +L+  N ++WNA+
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFN-SLAAKNVVSWNAL 278

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           +AG+A++G+   V+ LF  +  +GF P  +++ +V TA  ++G + E  KW+    ++  
Sbjct: 279 IAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSG-SLEQGKWVHAHVIKSG 337

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
            +P       LI    ++G ++DA+++   +  + D   W +++S  A HG    A ++ 
Sbjct: 338 GQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAEALQLF 396

Query: 395 KRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
           ++++   + P ++  ++ V    S  G  DE     ++MK  ++  +
Sbjct: 397 EQMLKAKVQP-NEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQ 442


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/556 (34%), Positives = 321/556 (57%), Gaps = 4/556 (0%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  A+K+ +  +  +   L+  Y+K   +  +   F  IP  +++  + +IS ++ S  
Sbjct: 285 IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQ 344

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +   F   LR    S LPN+ +L+S+ + C ++     FG  +H+ ++K+      F G+
Sbjct: 345 NEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ-LDFGKQIHNHAIKIGHESDLFVGN 403

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+ FY++    D++ K+F  +R+ + V +  ++VGF+Q+    ++LSVF +M+++ +  
Sbjct: 404 ALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPC 463

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T    S  LRA A  A++     IH     S  + + ++G  LID Y K G + DA +VF
Sbjct: 464 TQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF 523

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            ++L   + I+WNA+++GYA  G  +  LELF  +       ++ +F+A+L+   + GL 
Sbjct: 524 -QHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLV 582

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
                  + M++ + ++P +EHYTC++  +GRAGRL DA +    +P  P A VWRALLS
Sbjct: 583 NHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 642

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IH    +     +++++I P D++ YV+++N+ +  G  D+VA +RK M++  VRK 
Sbjct: 643 SCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKV 702

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SW+E+KG++H F  G   H     I   L  L  +  R GY+P  + +LH+V   +K
Sbjct: 703 PGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQK 762

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              LW HSE+LALA+GLV   P G  +RI+KNLR C DCH +F  IS++V+REI+VRD+N
Sbjct: 763 TRMLWVHSERLALAYGLVM-TPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDIN 821

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 822 RFHHFEDGKCSCGDYW 837



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 178/389 (45%), Gaps = 11/389 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           + + LI  YS  +L+S +  +FN I   + V WTA++S +S +    N F    +     
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSG 258

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
             PN   L S+ K    L    L G  +H  ++K     +P  G AL+  Y++     +A
Sbjct: 259 CKPNPFALTSVLKAAVCLPSVVL-GKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 317

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           +  F+ I   DV+    MI  +AQ+++   +  +F  +  S V    Y +S  L+A   +
Sbjct: 318 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 377

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
             ++  + IH HA+  G + ++ VG  L+D Y K   +  + ++F  +L   N ++WN +
Sbjct: 378 VQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF-SSLRDANEVSWNTI 436

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL---AGESEKWIERMKV 331
           + G++Q G     L +F  ++       + ++ +VL A  +      AG+    IE+   
Sbjct: 437 VVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTF 496

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
                 G      LI    + G + DA ++   +  E D   W A++S  A+HG+A  A 
Sbjct: 497 NNDTVIG----NSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADAL 551

Query: 392 KMGKRLIDIN-PYDDSAYVIVANVLSGVG 419
           ++  R+   N   +D  +V + +V S  G
Sbjct: 552 ELFDRMNKSNVESNDITFVALLSVCSSTG 580



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 142/305 (46%), Gaps = 15/305 (4%)

Query: 19  RIVHARALKSS---QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           R VH   ++     + D    N L+  Y K   L+ + RLF+ +P  N+VS+  L+ AH+
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 76  N-----SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
                 +  +L   L    H       NQ  L ++ K   ++  A L G  +HS + KL 
Sbjct: 139 QRGDFEAAAALFRRLRWEGHEV-----NQFVLTTMLKLAIAMDAAGLAG-GVHSCAWKLG 192

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                F GS L+  YS      +A+ VF+ I  +D V + AM+  +++N    ++  VF+
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            MR S      + ++  L+AA  L ++   + IHG A+ +  D    VG  L+D Y K G
Sbjct: 253 KMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCG 312

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            + DAR  F E +   + I  + M++ YAQ        ELF  L      P+EYS  +VL
Sbjct: 313 DIKDARLAF-EMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVL 371

Query: 311 TALCN 315
            A  N
Sbjct: 372 QACTN 376



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 221 RVIHGHAVV-SGLDR-NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           R +HGH V   G+ R ++     L++ YGK G ++ ARR+FD  +   N +++  ++  +
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDR-MPERNMVSFVTLVQAH 137

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEY---SFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           AQ+GD      LF  L   G   +++   + L +  A+  AGLAG       ++   +  
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             G    + LI A      + DAE +   +    DA VW A++S
Sbjct: 198 FVG----SGLIDAYSLCSLVSDAEHVFNGI-VRKDAVVWTAMVS 236


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 312/563 (55%), Gaps = 29/563 (5%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPLS---LNIFLSML 88
           +N ++  YS+S     +  LF ++   NI    V+WTA+I+ +S    S   LN+F  M+
Sbjct: 341 WNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMI 400

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK--LSLHDKPFCG-------- 138
              +L   PN  T+ S+   CASL  AF  G  +H+ SLK  L   D  F G        
Sbjct: 401 FSGSL---PNCVTIISVLSACASLG-AFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 456

Query: 139 SALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           +AL+  YS+ RS   A+ +FD+I   ER+VV +  MI G AQ     D+L +F +M S  
Sbjct: 457 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 516

Query: 197 VG--STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN--VIVGTGLIDGYGKAGIV 252
            G     Y +S  L A A LAA+   + IH + +      +    V   LID Y K G V
Sbjct: 517 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 576

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD ++S  ++I+W +MM GY   G  S  L++F  +   GF PD+ +FL VL A
Sbjct: 577 DTARHVFD-SMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 635

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  +   + + M   Y L P  EHY C I  + R+GRL+ A R    MP EP A 
Sbjct: 636 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAV 695

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALLS   +H   ++A     +L+++N  +D +Y +++N+ +  GRW +VA +R +MK
Sbjct: 696 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMK 755

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
              ++K  G SW++ +     F  GDR H  +  IY  L  L++  + +GYVP  +  LH
Sbjct: 756 KSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALH 815

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V + EK   L  HSEKLALA+GL++ +P G  +RI KNLR+C DCH +F YIS++V+ E
Sbjct: 816 DVDEEEKNNLLVEHSEKLALAYGLLTTSP-GCPIRITKNLRVCGDCHSAFTYISKIVDHE 874

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD +R+H F NGSC+CG  W
Sbjct: 875 IVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 20/342 (5%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHI-PSPNIVSWTALISAHSNS---PLSLNIFLSML 88
           RS+   ++ +Y       Y+L +   + PSP  V W  LI  H        ++N+   ML
Sbjct: 96  RSLGTGVVASYLACGATDYALLVLERVTPSP-AVWWNLLIREHIKQGRLDSAINVSCRML 154

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R  T    P+  TL  + K C  L  ++  G + H L          F  +ALV  YSR 
Sbjct: 155 RAGTR---PDHFTLPHVLKACGELP-SYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 210

Query: 149 RSPDNAKKVFDEIRER---DVVCYGAMIVGFAQNSRLVDSLSVFADM------RSSDVGS 199
            S + A  +FDEI +R   DV+ + +++    ++S    +L +F+ M      + ++  S
Sbjct: 211 GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 270

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            +  +   L A   L A+ Q + +HG+A+ +G   +V VG  LID Y K G++ +A +VF
Sbjct: 271 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF 330

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +  +   + ++WNAM+AGY+Q G+     ELF  +       D  ++ AV+      G +
Sbjct: 331 NM-MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCS 389

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
            E+     +M     L P       ++SA    G       I
Sbjct: 390 HEALNLFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGTEI 430



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS---NSPLSLNIFLS 86
           D  +YN LI  YSK      +  +F+ IP    N+V+WT +I  H+   +S  +L +F+ 
Sbjct: 452 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 511

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--FCGSALVHF 144
           M+  P     PN  T++ +   CA L+ A   G  +H+  L+   ++    F  + L+  
Sbjct: 512 MISEP-YGVAPNAYTISCILMACAHLA-AIRIGKQIHAYVLRHHRYESSAYFVANCLIDM 569

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           YS+    D A+ VFD + ++  + + +M+ G+  + R  ++L +F  MR +
Sbjct: 570 YSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA 620


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 312/563 (55%), Gaps = 29/563 (5%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPLS---LNIFLSML 88
           +N ++  YS+S     +  LF ++   NI    V+WTA+I+ +S    S   LN+F  M+
Sbjct: 334 WNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMI 393

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK--LSLHDKPFCG-------- 138
              +L   PN  T+ S+   CASL  AF  G  +H+ SLK  L   D  F G        
Sbjct: 394 FSGSL---PNCVTIISVLSACASLG-AFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 449

Query: 139 SALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           +AL+  YS+ RS   A+ +FD+I   ER+VV +  MI G AQ     D+L +F +M S  
Sbjct: 450 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 509

Query: 197 VG--STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN--VIVGTGLIDGYGKAGIV 252
            G     Y +S  L A A LAA+   + IH + +      +    V   LID Y K G V
Sbjct: 510 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 569

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD ++S  ++I+W +MM GY   G  S  L++F  +   GF PD+ +FL VL A
Sbjct: 570 DTARHVFD-SMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 628

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  +   + + M   Y L P  EHY C I  + R+GRL+ A R    MP EP A 
Sbjct: 629 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAV 688

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALLS   +H   ++A     +L+++N  +D +Y +++N+ +  GRW +VA +R +MK
Sbjct: 689 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMK 748

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
              ++K  G SW++ +     F  GDR H  +  IY  L  L++  + +GYVP  +  LH
Sbjct: 749 KSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALH 808

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V + EK   L  HSEKLALA+GL++ +P G  +RI KNLR+C DCH +F YIS++V+ E
Sbjct: 809 DVDEEEKNNLLVEHSEKLALAYGLLTTSP-GCPIRITKNLRVCGDCHSAFTYISKIVDHE 867

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD +R+H F NGSC+CG  W
Sbjct: 868 IVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 20/342 (5%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHI-PSPNIVSWTALISAHSNS---PLSLNIFLSML 88
           RS+   ++ +Y       Y+L +   + PSP  V W  LI  H        ++N+   ML
Sbjct: 89  RSLGTGVVASYLACGATDYALLVLERVTPSP-AVWWNLLIREHIKQGRLDSAINVSCRML 147

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R  T    P+  TL  + K C  L  ++  G + H L          F  +ALV  YSR 
Sbjct: 148 RAGTR---PDHFTLPHVLKACGELP-SYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 203

Query: 149 RSPDNAKKVFDEIRER---DVVCYGAMIVGFAQNSRLVDSLSVFADM------RSSDVGS 199
            S + A  +FDEI +R   DV+ + +++    ++S    +L +F+ M      + ++  S
Sbjct: 204 GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 263

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            +  +   L A   L A+ Q + +HG+A+ +G   +V VG  LID Y K G++ +A +VF
Sbjct: 264 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF 323

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +  +   + ++WNAM+AGY+Q G+     ELF  +       D  ++ AV+      G +
Sbjct: 324 NM-MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCS 382

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
            E+     +M     L P       ++SA    G       I
Sbjct: 383 HEALNLFRQMIFSGSL-PNCVTIISVLSACASLGAFSQGTEI 423



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS---NSPLSLNIFLS 86
           D  +YN LI  YSK      +  +F+ IP    N+V+WT +I  H+   +S  +L +F+ 
Sbjct: 445 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 504

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--FCGSALVHF 144
           M+  P     PN  T++ +   CA L+ A   G  +H+  L+   ++    F  + L+  
Sbjct: 505 MISEP-YGVAPNAYTISCILMACAHLA-AIRIGKQIHAYVLRHHRYESSAYFVANCLIDM 562

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           YS+    D A+ VFD + ++  + + +M+ G+  + R  ++L +F  MR +
Sbjct: 563 YSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA 613


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 310/561 (55%), Gaps = 11/561 (1%)

Query: 19  RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           R +H R +K+    D  +   L++ Y+K   L  +  +F  I   N+V+W A+I+A   H
Sbjct: 427 RQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQH 486

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                ++  F ++L+       P+  T  S+   C S   A   G  + SL ++      
Sbjct: 487 EKYDNAVATFQALLKE---GIKPDSSTFTSILNVCKS-PDALELGKWVQSLIIRAGFESD 542

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +ALV  +       +A  +F+++ ERD+V +  +I GF Q+     +   F  M+ 
Sbjct: 543 LHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQE 602

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           S V       +G L A A   A+ + R +H     + LD +V+VGTGLI  Y K G + D
Sbjct: 603 SGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDD 662

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  VF  NL   N  +W +M+ GYAQ G     LELF  ++  G  PD  +F+  L+A  
Sbjct: 663 AHLVF-HNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACA 721

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E     E MK  + +EP +EHY C++   GRAG L +A      M  +PD+ +W
Sbjct: 722 HAGLIKEGLHHFESMK-DFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLW 780

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    +H   ++A K+ ++ ++++P DD  YVI++N+ +  G W EV ++RKVM DR
Sbjct: 781 GALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDR 840

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V K+ G+SWIEV G+VH+F + D+ H + E+I+ +L  L  E ++LGYVP    +LH+V
Sbjct: 841 GVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDV 900

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            D EK  AL +HSE+LA+A+GL+   P    + I KNLR+C DCH + K IS++ +R+I+
Sbjct: 901 EDSEKEHALCHHSERLAIAYGLLKTPPLTPIV-ISKNLRVCGDCHTATKLISKITKRQII 959

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
            RD NR+H F +G C+CGD W
Sbjct: 960 ARDSNRFHHFKDGVCSCGDFW 980



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 174/363 (47%), Gaps = 10/363 (2%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSM 87
            D  +   LI  + K   +  +L++FN++P  ++++WT++I+    H     + N+F  M
Sbjct: 238 TDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVM 297

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
                    P++    SL K C +   A   G  +H+   ++ L  + + G+AL+  Y++
Sbjct: 298 EEE---GVQPDKVAFVSLLKAC-NHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTK 353

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             S ++A +VF+ ++ R+VV + AMI GFAQ+ R+ ++   F  M  S +          
Sbjct: 354 CGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSI 413

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A +  +A++Q R IH   + +G   +  V T L+  Y K G + DAR VF E +S  N
Sbjct: 414 LGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVF-ERISKQN 472

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            +AWNAM+  Y Q       +  F  L   G  PD  +F ++L  +C +  A E  KW++
Sbjct: 473 VVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILN-VCKSPDALELGKWVQ 531

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            + +R   E  L     L+S     G L  A  +   MP E D   W  +++    HG+ 
Sbjct: 532 SLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHGEN 590

Query: 388 DMA 390
             A
Sbjct: 591 QFA 593



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 188/429 (43%), Gaps = 22/429 (5%)

Query: 12  QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           +N     RI +       Q D  ++N LI+ Y+K    + + ++F+ +P  ++ SW  L+
Sbjct: 118 KNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLL 177

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
             +         F    +       P++ T   +   CA   +    G  L SL L    
Sbjct: 178 GGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGG-ELFSLILNAGW 236

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F G+AL++ + +    D+A KVF+ +  RD++ + +MI G A++ +   + ++F  
Sbjct: 237 DTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQV 296

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M    V          L+A     A+EQ + +H      GLD  + VGT L+  Y K G 
Sbjct: 297 MEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGS 356

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA  VF+  +   N ++W AM+AG+AQ G        F+ +   G  P+  +F+++L 
Sbjct: 357 MEDALEVFNL-VKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILG 415

Query: 312 ALCNAGLAGESEKWIER-MKVRYKLEPGLEHYTCLISAMGRAGRLEDA----ERIAMAMP 366
           A        +  +  +R +K  Y  +  +   T L+S   + G L DA    ERI+    
Sbjct: 416 ACSRPSALKQGRQIHDRIIKAGYITDDRVR--TALLSMYAKCGSLMDARNVFERIS---- 469

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSG-----VG 419
            + +   W A+++    H K D A    + L+   I P D S +  + NV        +G
Sbjct: 470 -KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKP-DSSTFTSILNVCKSPDALELG 527

Query: 420 RWDEVAEVR 428
           +W +   +R
Sbjct: 528 KWVQSLIIR 536



 Score = 38.9 bits (89), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           LN    P+   T+ R +HA   +++   D  +   LI+ Y+K   +  +  +F+++P  N
Sbjct: 616 LNACASPE-ALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKN 674

Query: 64  IVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
           + SWT++I+    H     +L +F  M +       P+  T       CA   HA L   
Sbjct: 675 VYSWTSMITGYAQHGRGKEALELFCQMQQE---GVKPDWITFVGALSACA---HAGLIKE 728

Query: 121 SLH 123
            LH
Sbjct: 729 GLH 731


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 324/562 (57%), Gaps = 14/562 (2%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           VH   +K+     S+Y    LI  Y+K + L  +  +F+ +P  N+VSWTA+ISA+S   
Sbjct: 84  VHTHMIKTCYLP-SVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRG 142

Query: 79  LS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +   LN+F+ MLR  T    PN  T A++  +C   S  F  G  +HS+++K +     
Sbjct: 143 FAFEALNLFVEMLRSDTE---PNHFTFATILTSCYG-SLGFETGRQIHSIAIKRNYESHM 198

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F GS+L+  Y++     +A  VF  + ERDVV   A+I G+AQ     ++L +F  ++  
Sbjct: 199 FVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIE 258

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            + S     +  L A + LAA+   + +H H + SG    V++   LID Y K G V  A
Sbjct: 259 GMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYA 318

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALC 314
           RR+FD ++     I+WNAM+ GY++ G    VLELF L+ E     PD  ++LAVL+   
Sbjct: 319 RRIFD-SMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS 377

Query: 315 NAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           +  L     E +   +  +  +EP + HY C++  +GRAGR+E+A      MPF P AA+
Sbjct: 378 HGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAI 437

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W +LL    +H   ++   +G++L+++ P +   YVI++N+ +  G+W+++  +R +M++
Sbjct: 438 WGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQE 497

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           + V KE GRSW+E+   VH F A D  H R E++  K+ EL  + +  GYVP    +L++
Sbjct: 498 KAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYD 557

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + +K + L  HSEKLALAFGL++  P G T+R++KNLRIC DCH   K++SR+  R +
Sbjct: 558 VDEEQKEKVLLGHSEKLALAFGLIA-TPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTV 616

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD NR+H  + G C+CGD W
Sbjct: 617 ILRDKNRFHNIVGGVCSCGDYW 638



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 179/389 (46%), Gaps = 30/389 (7%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPT 92
           R ++ + ++ Y+ S  +S+S       PSPN+ +  +          S  +  ++L+   
Sbjct: 13  RHLFLSPVSRYTFSRQISFS-------PSPNLKTLCS----------SGQLKEALLQMAI 55

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           L          S+   C S   A   G  +H+  +K       +  + L+  Y++     
Sbjct: 56  LGREVKFEGYDSILNECVS-QRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLG 114

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A+ +FDE+ +R+VV + AMI  ++Q     ++L++F +M  SD     +  +  L +  
Sbjct: 115 DARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCY 174

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
                E  R IH  A+    + ++ VG+ L+D Y K+G + DA  VF   L   + +A  
Sbjct: 175 GSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVF-HCLPERDVVACT 233

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           A+++GYAQ G     L+LF  L++ G   +  ++ +VLTAL  +GLA  +     +    
Sbjct: 234 AIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTAL--SGLAALNHG---KQVHS 288

Query: 333 YKLEPGLEHYTCLISAM----GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           + L  G   Y  L++++     + G +  A RI  +MP E     W A+L   + HG A 
Sbjct: 289 HVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAMLVGYSKHGMAR 347

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSG 417
              ++ K + + N     +   +A VLSG
Sbjct: 348 EVLELFKLMREENKVKPDSITYLA-VLSG 375


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/596 (35%), Positives = 338/596 (56%), Gaps = 29/596 (4%)

Query: 3   LDLN----QQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNH 58
           L+LN    Q+ Q  +     + VHA+ L +  + ++ Y + + N S     +Y+  +FNH
Sbjct: 2   LNLNHPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFASTYAFTIFNH 61

Query: 59  IPSPNIVSWTALISA---HSNS-PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSH 114
           IP+P +  +  LIS+   HS+   L+ +++  +L H TL   PN  T  SLFK CAS  H
Sbjct: 62  IPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQ--PNSFTFPSLFKACAS--H 117

Query: 115 AFL-FGLSLHSLSLK-LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
            +L  G  LH+  LK L     PF  ++L++FY+++     ++ +FD+I E D+  +  M
Sbjct: 118 PWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTM 177

Query: 173 IVGFAQNSRLV-------------DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
           +  +AQ++  V             ++L +F DM+ S +      +   + A + L A+ Q
Sbjct: 178 LAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQ 237

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
               HG+ + + L  N  VGT L+D Y K G ++ A ++FDE LS  ++  +NAM+ G+A
Sbjct: 238 GAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDE-LSDRDTFCYNAMIGGFA 296

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
             G  +  LEL+  +++    PD  + +  + A  + GL  E  +  E MK  + +EP L
Sbjct: 297 VHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKL 356

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           EHY CLI  +GRAGRL++AE     MP +P+A +WR+LL  + +HG  +M     K LI+
Sbjct: 357 EHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIE 416

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDR 459
           + P     YV+++N+ + +GRW++V  VR +MKD  V K  G S +E+ G +H FL GD+
Sbjct: 417 LEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDK 476

Query: 460 MHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG 519
            H  +++IY+K+ E+       G+ P   E+L +V + +K + L YHSE+LA+AF L++ 
Sbjct: 477 AHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIAS 536

Query: 520 APRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +     +RI+KNLR+C DCH   K IS   +R+I+VRD NR+H F +GSC+C D W
Sbjct: 537 S-SSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 204/595 (34%), Positives = 331/595 (55%), Gaps = 38/595 (6%)

Query: 11  PQNTSTDPRIVHARALKSSQADRSIYNNLITN--------------YSKSNLLSYSLRLF 56
           P  +S  P +      K+    + ++ ++IT                S + + +++L +F
Sbjct: 4   PNPSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIF 63

Query: 57  NHIPSPNIVSWTALISAHSN----SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS- 111
           NHIP+P I  +  LIS+ +N    + ++ +++  +L H TL   PN  T  SLFK C S 
Sbjct: 64  NHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLK--PNGFTFPSLFKACGSQ 121

Query: 112 --LSHAFLFGLSLHSLSLK-LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
             L H    G +LH+  LK L     PF  +AL+++Y++       + +F++I + D+  
Sbjct: 122 PWLRH----GRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLAS 177

Query: 169 YGAMIVGFAQNSRLV--------DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           + +++  +  NS  +        + L++F +M+ S + +    +   + A AEL A+ Q 
Sbjct: 178 WNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQG 237

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
              H + +   L  N  VGT LID Y K G +  A ++FD+ L   +++ +NAM+ G+A 
Sbjct: 238 AWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQ-LPHRDTLCYNAMIGGFAI 296

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G     L+LF  + + G APD+ + +  + +  + GL  E     E MK  Y +EP LE
Sbjct: 297 HGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLE 356

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           HY CL+  +GRAGRL +AE   + MP +P+A +WR+LL  + +HG  ++   + K LI +
Sbjct: 357 HYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQL 416

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
            P     YV+++N+ + + RWD+V  VRK+MKD  + K  G S +EV G +H FL GD+ 
Sbjct: 417 EPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKT 476

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGA 520
           H R+++IY KL E+       G+ P   E+L ++ + EK +AL YHSE+LA+AF L++ +
Sbjct: 477 HPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIA-S 535

Query: 521 PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
                +RI+KNLR+C DCH S K IS++ EREI+VRD NR+H F  G+C+C D W
Sbjct: 536 HHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 308/549 (56%), Gaps = 10/549 (1%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSM 87
           +D  I N LI+ Y++   L  +  LF  +P  +++SW A+I+ ++   +   ++ ++  M
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM 422

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
               +    P + T   L   CA+ S A+  G  +H   L+  +       +AL++ Y R
Sbjct: 423 ---QSEGVKPGRVTFLHLLSACAN-SSAYADGKMIHEDILRSGIKSNGHLANALMNMYRR 478

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             S   A+ VF+  + RDV+ + +MI G AQ+     +  +F +M++ ++       +  
Sbjct: 479 CGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASV 538

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L       A+E  + IHG    SGL  +V +G  LI+ Y + G + DAR VF  +L   +
Sbjct: 539 LSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF-HSLQHRD 597

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAGLAGESEKWI 326
            ++W AM+ G A QG+    +ELF  ++  GF  PD  +F ++L+A  +AGL  E  +  
Sbjct: 598 VMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIF 657

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             M+  Y + P +EHY CL+  +GRA R ++AE +   MPF PDAAVW  LL    IHG 
Sbjct: 658 SSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGN 717

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
             +A       + +N  + + Y++++NV +  GRWD+VA++R+VM+ R +RKE GRSWIE
Sbjct: 718 IALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIE 777

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           V   +H F+A DR H  T +IY +L  L  E E  GY P    +LH++G   +  +L  H
Sbjct: 778 VDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTH 837

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SE+LA+A+GL+   P G  +RI KNLRIC DCH + K+IS++V REI+ RD NR+H F N
Sbjct: 838 SERLAIAYGLIK-TPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKN 896

Query: 567 GSCTCGDLW 575
           G C+C D W
Sbjct: 897 GKCSCEDYW 905



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 197/421 (46%), Gaps = 20/421 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H++ +K+  Q D  + N+L++ Y K   L  + ++F  I   ++VS+  ++  ++    
Sbjct: 150 IHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAY 209

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASL---FKTCASLSHAFLFGLSLHSLSLKLSLHD 133
               L +F  M    +    P++ T  +L   F T + L      G  +H L+++  L+ 
Sbjct: 210 VKECLGLFGQM---SSEGISPDKVTYINLLDAFTTPSMLDE----GKRIHKLTVEEGLNS 262

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               G+ALV    R    D+AK+ F  I +RDVV Y A+I   AQ+   V++   +  MR
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           S  V          L A +   A+E  ++IH H    G   +V +G  LI  Y + G + 
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            AR +F   +   + I+WNA++AGYA++ D+   + L+  ++  G  P   +FL +L+A 
Sbjct: 383 KARELF-YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSAC 441

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            N+    +  K I    +R  ++        L++   R G L +A+ +        D   
Sbjct: 442 ANSSAYADG-KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVIS 499

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ++++  A HG  + A K+ + + +     D+  +  A+VLSG  +  E  E+ K +  
Sbjct: 500 WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN--ITFASVLSGC-KNPEALELGKQIHG 556

Query: 434 R 434
           R
Sbjct: 557 R 557



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 173/396 (43%), Gaps = 24/396 (6%)

Query: 4   DLNQQPQPQNTSTD-------------------PRIVHARALKSSQADRSIYNNLITN-Y 43
           D++   QP+ T TD                    + +HA+ +++        +NL+ N Y
Sbjct: 13  DVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMY 72

Query: 44  SKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLA 103
            K   +  + ++F  +P  +++SW +LIS ++        F          F+PN+ T  
Sbjct: 73  VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYI 132

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           S+   C S +     G  +HS  +K      P   ++L+  Y +      A++VF  I  
Sbjct: 133 SILTACYSPAE-LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISP 191

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           RDVV Y  M+  +AQ + + + L +F  M S  +          L A    + +++ + I
Sbjct: 192 RDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRI 251

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H   V  GL+ ++ VGT L+    + G V  A++ F + ++  + + +NA++A  AQ G 
Sbjct: 252 HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF-KGIADRDVVVYNALIAALAQHGH 310

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
                E ++ +   G A +  ++L++L A C+   A E+ K I            ++   
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNA-CSTSKALEAGKLIHSHISEDGHSSDVQIGN 369

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            LIS   R G L  A  +   MP + D   W A+++
Sbjct: 370 ALISMYARCGDLPKARELFYTMP-KRDLISWNAIIA 404


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 192/544 (35%), Positives = 319/544 (58%), Gaps = 9/544 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           +YN +IT   +  ++  + RLF  +   + ++WT +++  + + L   +L IF  M R  
Sbjct: 208 MYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRM-RFQ 266

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            ++   +Q T  S+   C +LS A   G  +H+  ++    D  F GSALV  YS+ RS 
Sbjct: 267 GIAI--DQYTFGSILTACGALS-ALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSI 323

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A+ VF  +  ++++ + A+IVG+ QN    +++ VF++M+   +    Y +   + + 
Sbjct: 324 KLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSC 383

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A LA++E+    H  A+VSGL   + V   L+  YGK G + DA R+FDE +S  + ++W
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDE-MSFHDQVSW 442

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            A+++GYAQ G     ++LF  +  +G  PD  +F+ VL+A   AG   +   +   M+ 
Sbjct: 443 TALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQK 502

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            + + P  +HYTC+I    R+G+L++AE     MP  PDA  W  LLS   + G  ++  
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGK 562

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              + L++I+P + ++YV++ ++ +  G+W+EVA++R+ M+DR+V+KE G SWI+ K KV
Sbjct: 563 WAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKV 622

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H+F A D+ H  ++ IY KL  L  +    GY P    +LH+V D +K   + +HSEKLA
Sbjct: 623 HIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLA 682

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL+   P+   +RIVKNLR+C DCH + K+IS++  R+I+VRD  R+H+F +G C+C
Sbjct: 683 IAFGLIF-VPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSC 741

Query: 572 GDLW 575
           GD W
Sbjct: 742 GDFW 745



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 133/507 (26%), Positives = 220/507 (43%), Gaps = 67/507 (13%)

Query: 22  HARALKSSQA----DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           HARA +   A    +   YN L++  + + LLS    LF  +   +IVS+ A+I+  S  
Sbjct: 57  HARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGG 116

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                ++ ++L++L+  + S  P++ T++++    ++L    L G   H   L+L     
Sbjct: 117 GSHAQAVRVYLALLQADS-SVRPSRITMSTMVMAASALGDRAL-GKQFHCQILRLGFGAN 174

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI--------------------- 173
            F GS LV  Y++     +AK+ FDE+  ++VV Y  MI                     
Sbjct: 175 AFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTD 234

Query: 174 ----------VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
                      GF QN    ++L +F  MR   +    Y     L A   L+A+EQ + I
Sbjct: 235 RDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQI 294

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H + + +  D NV VG+ L+D Y K   +  A  VF   ++  N I+W A++ GY Q G 
Sbjct: 295 HAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVF-RRMTCKNIISWTALIVGYGQNGC 353

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY- 342
               + +F  ++  G  PD+Y+  +V+++  N     E  ++         L  GL HY 
Sbjct: 354 SEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQF-----HCLALVSGLMHYI 408

Query: 343 ---TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
                L++  G+ G +EDA R+   M F  D   W AL+S  A  G+A     + ++++ 
Sbjct: 409 TVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVSGYAQFGRAKETIDLFEKMLA 467

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDR 459
                D    I   VLS   R   V              E GRS+     K H  +  D 
Sbjct: 468 KGVKPDGVTFI--GVLSACSRAGFV--------------EKGRSYFHSMQKDHGIVPIDD 511

Query: 460 MHERTEDIYTKLAELMEECERLGYVPV 486
            +    D+Y++  +L E  E +  +P+
Sbjct: 512 HYTCMIDLYSRSGKLKEAEEFIKQMPM 538


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 321/559 (57%), Gaps = 10/559 (1%)

Query: 21   VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
            +HA A+K+    D  +   LI  YSK   +  +  LF +    ++ SW A++  +    +
Sbjct: 1059 IHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGD 1118

Query: 77   SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             P +L +++ M      S   +Q TL +  K    L      G  +H++ +K   +   F
Sbjct: 1119 FPKALRLYILMQESGERS---DQITLVNAAKAAGGLV-GLKQGKQIHAVVVKRGFNLDLF 1174

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
              S ++  Y +    ++A++VF EI   D V +  MI G  +N +   +L  +  MR S 
Sbjct: 1175 VTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSK 1234

Query: 197  VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
            V    Y  +  ++A + L A+EQ R IH + V      +  V T L+D Y K G + DAR
Sbjct: 1235 VQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDAR 1294

Query: 257  RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             +F +  +     +WNAM+ G AQ G+    L+ F  ++ RG  PD  +F+ VL+A  ++
Sbjct: 1295 GLF-KRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHS 1353

Query: 317  GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            GL  E+ +    M+  Y +EP +EHY+CL+ A+ RAGR+E+AE++  +MPFE  A+++R 
Sbjct: 1354 GLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRT 1413

Query: 377  LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            LL+   +    +   ++ ++L+ + P D +AYV+++NV +   +W+ VA  R +M+   V
Sbjct: 1414 LLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNV 1473

Query: 437  RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            +K+ G SW+++K KVH+F+AGDR HE T+ IY K+  +M+     GYVP  D  L +V +
Sbjct: 1474 KKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEE 1533

Query: 497  REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             +K  +L+YHSEKLA+A+GL+   P   TLR++KNLR+C DCH + KYIS+V +REIV+R
Sbjct: 1534 EDKECSLYYHSEKLAIAYGLMK-TPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLR 1592

Query: 557  DVNRYHRFLNGSCTCGDLW 575
            D NR+H F NG C+CGD W
Sbjct: 1593 DANRFHHFRNGICSCGDYW 1611



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 179/369 (48%), Gaps = 13/369 (3%)

Query: 34   SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
            S+ N LI  Y K+  +S +  +F  +   +++SW  +IS  + S L   S+ +F+ +LR 
Sbjct: 971  SVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRD 1030

Query: 91   PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
               S LP+Q T+AS+ + C+SL   +     +H+ ++K  +    F  +AL+  YS+   
Sbjct: 1031 ---SLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGK 1087

Query: 151  PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
             + A+ +F      D+  + A++ G+  +     +L ++  M+ S   S    +  A +A
Sbjct: 1088 MEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKA 1147

Query: 211  AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A  L  ++Q + IH   V  G + ++ V +G++D Y K G +  ARRVF E +   + +A
Sbjct: 1148 AGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSE-IPSPDDVA 1206

Query: 271  WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER-- 328
            W  M++G  + G +   L  +H + +    PDEY+F A L   C+   A E  + I    
Sbjct: 1207 WTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTF-ATLVKACSLLTALEQGRQIHANI 1265

Query: 329  MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
            +K+    +P +   T L+    + G +EDA R           A W A++   A HG A 
Sbjct: 1266 VKLNCAFDPFV--MTSLVDMYAKCGNIEDA-RGLFKRTNTRRIASWNAMIVGLAQHGNAK 1322

Query: 389  MASKMGKRL 397
             A +  K +
Sbjct: 1323 EALQFFKYM 1331



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 168/376 (44%), Gaps = 51/376 (13%)

Query: 22   HARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN--IVSWTALIS---AHS 75
            HAR L S    DR + NNLIT Y+K   LS + +LF+  P  N  +V+W A++S   AH+
Sbjct: 679  HARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHA 738

Query: 76   NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +          +LR   +S    + TLA +FK C  LS +     SLH  ++K+ L    
Sbjct: 739  DKSHDGFHLFRLLRRSVVS--TTRHTLAPVFKMCL-LSASPSASESLHGYAVKIGLQWDV 795

Query: 136  FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD---- 191
            F   ALV+ Y++F     A+ +FD +  RDVV +  M+  +       +++ +F++    
Sbjct: 796  FVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRT 855

Query: 192  -MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
              R  DV  T+  +S  ++    +  ++Q +                  T L        
Sbjct: 856  GFRPDDV--TLRTLSRVVKCKKNILELKQFKAY---------------ATKLF------- 891

Query: 251  IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
                   ++D++ S  + I WN  ++ + Q+G+    ++ F  +     A D  +F+ +L
Sbjct: 892  -------MYDDDGS--DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVML 942

Query: 311  TALCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
            T +  AGL   E  K I  + +R  L+  +    CLI+   +AG +  A  +   M  E 
Sbjct: 943  TVV--AGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMN-EV 999

Query: 370  DAAVWRALLSFSAIHG 385
            D   W  ++S   + G
Sbjct: 1000 DLISWNTMISGCTLSG 1015



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 155/368 (42%), Gaps = 35/368 (9%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H  A+K   Q D  +   L+  Y+K  L+  +  LF+ +   ++V W  ++ A+ ++ L
Sbjct: 782  LHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCL 841

Query: 80   SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 L         F P+  TL +L +      +         + + KL ++D    GS
Sbjct: 842  EYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELK-QFKAYATKLFMYDDD--GS 898

Query: 140  ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
                                     DV+ +   +  F Q     +++  F DM +S V  
Sbjct: 899  -------------------------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVAC 933

Query: 200  TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                    L   A L  +E  + IHG  + SGLD+ V VG  LI+ Y KAG VS AR VF
Sbjct: 934  DGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVF 993

Query: 260  DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN--AG 317
             + ++ ++ I+WN M++G    G +   + +F  L      PD+++  +VL A  +   G
Sbjct: 994  GQ-MNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGG 1052

Query: 318  LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
                ++     MK    L+  +   T LI    + G++E+AE + +      D A W A+
Sbjct: 1053 YYLATQIHACAMKAGVVLDSFVS--TALIDVYSKRGKMEEAEFLFVNQD-GFDLASWNAI 1109

Query: 378  LSFSAIHG 385
            +    + G
Sbjct: 1110 MHGYIVSG 1117



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 4/192 (2%)

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVG 175
            G   H+  L    H   F  + L+  Y++  S  +A+K+FD   +  RD+V + A++  
Sbjct: 674 LGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSA 733

Query: 176 FAQNS-RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
            A ++ +  D   +F  +R S V +T + ++   +     A+      +HG+AV  GL  
Sbjct: 734 LAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQW 793

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           +V V   L++ Y K G++ +AR +FD  ++V + + WN MM  Y     +   + LF   
Sbjct: 794 DVFVAGALVNIYAKFGLIREARVLFD-GMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEF 852

Query: 295 EMRGFAPDEYSF 306
              GF PD+ + 
Sbjct: 853 HRTGFRPDDVTL 864



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 6/174 (3%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV-L 266
           LR A   + +   +  H   + SG   +  V   LI  Y K G +S AR++FD       
Sbjct: 663 LRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNR 722

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEM--RGFAPDEYSFLAVLTALCNAGLAGESEK 324
           + + WNA+++  A   D+S   + FHL  +  R         LA +  +C    +  + +
Sbjct: 723 DLVTWNAILSALAAHADKSH--DGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
            +    V+  L+  +     L++   + G + +A  +   M    D  +W  ++
Sbjct: 781 SLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVR-DVVLWNVMM 833


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/548 (35%), Positives = 316/548 (57%), Gaps = 11/548 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D  + N  +  Y+K + L  + R+F  +    + SW ALI AH+ +     SL++FL M+
Sbjct: 435 DELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMM 494

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
                   P++ T+ SL   CA L   FL  G  +H   L+  L    F G +L+  Y +
Sbjct: 495 DS---GMDPDRFTIGSLLLACARLK--FLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQ 549

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             S    K +FD++  + +VC+  MI GF+QN    ++L  F  M S  +      V+G 
Sbjct: 550 CSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGV 609

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A ++++A+   + +H  A+ + L  +  V   LID Y K G +  ++ +FD  ++  +
Sbjct: 610 LGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDR-VNEKD 668

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
              WN ++AGY   G     +ELF L++ +G  PD ++FL VL A  +AGL  E  K++ 
Sbjct: 669 EAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLG 728

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
           +M+  Y ++P LEHY C++  +GRAG+L +A ++   MP EPD+ +W +LLS    +G  
Sbjct: 729 QMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDL 788

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
           ++  ++ K+L+++ P     YV+++N+ +G+G+WDEV +VR+ MK+  + K+ G SWIE+
Sbjct: 789 EIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEI 848

Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
            G V+ FL  D     ++ I     +L ++  ++GY P    +LH + +  K + L  HS
Sbjct: 849 GGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHS 908

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           EKLA++FGL++ A +G TLR+ KNLRIC DCH + K +S+VV+R+I+VRD  R+H F NG
Sbjct: 909 EKLAISFGLLNTA-KGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNG 967

Query: 568 SCTCGDLW 575
            CTCGD W
Sbjct: 968 LCTCGDFW 975



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 177/376 (47%), Gaps = 15/376 (3%)

Query: 19  RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R VHA    S +   D  +   +I  YS     S S  +F+     ++  + AL+S +S 
Sbjct: 112 RKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSR 171

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + L   ++++FL +L    L+  P+  TL  + K CA ++   L G ++H+L+LK     
Sbjct: 172 NALFRDAISLFLELLSATDLA--PDNFTLPCVAKACAGVADVEL-GEAVHALALKAGGFS 228

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F G+AL+  Y +    ++A KVF+ +R R++V + +++   ++N    +   VF  + 
Sbjct: 229 DAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLL 288

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCR---VIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            S+    +  V+  +      AA+ + R   V+HG A   G+   V V   L+D Y K G
Sbjct: 289 ISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCG 348

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM-RGFAPDEYSFLAV 309
            + +AR +FD N    N ++WN ++ GY+++GD   V EL   ++       +E + L V
Sbjct: 349 YLGEARALFDMN-GGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNV 407

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A C+      S K I     R+            ++A  +   L+ AER+   M  + 
Sbjct: 408 LPA-CSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKT 466

Query: 370 DAAVWRALLSFSAIHG 385
             + W AL+   A +G
Sbjct: 467 -VSSWNALIGAHAQNG 481



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 159/372 (42%), Gaps = 14/372 (3%)

Query: 20  IVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +VH  A K    +  ++ N+L+  YSK   L  +  LF+     N+VSW  +I  +S   
Sbjct: 320 VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEG 379

Query: 79  LSLNIF---LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               +F     M R   +    N+ T+ ++   C+   H  L    +H  + +       
Sbjct: 380 DFRGVFELLQEMQREEKVRV--NEVTVLNVLPACSG-EHQLLSLKEIHGYAFRHGFLKDE 436

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +A V  Y++  S D A++VF  +  + V  + A+I   AQN     SL +F  M  S
Sbjct: 437 LVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDS 496

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +    + +   L A A L  +   + IHG  + +GL+ +  +G  L+  Y +   +   
Sbjct: 497 GMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLG 556

Query: 256 RRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           + +FD  EN S+   + WN M+ G++Q       L+ F  +   G  P E +   VL A 
Sbjct: 557 KLIFDKMENKSL---VCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGA- 612

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           C+   A    K +    ++  L         LI    + G +E ++ I   +  E D AV
Sbjct: 613 CSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVN-EKDEAV 671

Query: 374 WRALLSFSAIHG 385
           W  +++   IHG
Sbjct: 672 WNVIIAGYGIHG 683



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 121/244 (49%), Gaps = 8/244 (3%)

Query: 80  SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSL-SLKLSLHDKPFC 137
           +LN+  S  ++ T+S    ++  +  L + C    +  + G  +H+L S    L +    
Sbjct: 72  ALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHV-GRKVHALVSASHKLRNDVVL 130

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SD 196
            + ++  YS   SP +++ VFD  +E+D+  Y A++ G+++N+   D++S+F ++ S +D
Sbjct: 131 STRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATD 190

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +    + +    +A A +A +E    +H  A+ +G   +  VG  LI  YGK G V  A 
Sbjct: 191 LAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAV 250

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL---EMRGFAPDEYSFLAVLTAL 313
           +VF E +   N ++WN++M   ++ G       +F  L   E  G  PD  + + V+ A 
Sbjct: 251 KVF-ETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPAC 309

Query: 314 CNAG 317
              G
Sbjct: 310 AAVG 313


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 322/560 (57%), Gaps = 8/560 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +H++A++     DR +   LI  Y+K ++   +  + ++F+ I   N+ SWTA+I+ +  
Sbjct: 293 LHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQ 352

Query: 77  SPLSLNIFLSMLRHPTLS-FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
                   L + R   L+  +PN  T +S  K CA+L+ A   G  + + ++KL      
Sbjct: 353 KGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLA-ALRIGEQVFTHAVKLGFSSVN 411

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              ++L+  Y+R    D+A+K FD + E++++ Y  +I  +A+N    ++L +F ++   
Sbjct: 412 CVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQ 471

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +G++ +  +  L  AA +  + +   IH   + SGL  N  V   LI  Y + G +  A
Sbjct: 472 GMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESA 531

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VF E++   N I+W +++ G+A+ G  +  LELFH +   G  P+  +++AVL+A  +
Sbjct: 532 FQVF-EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSH 590

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            GL  E  K  + M   + + P +EHY C++  +GR+G L +A +   +MP++ DA VWR
Sbjct: 591 VGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWR 650

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
             L    +HG  ++     K +I+  P+D +AY++++N+ +   +WDEV+ +RK MK++ 
Sbjct: 651 TFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKN 710

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           + KE G SW+EV+ KVH F  GD  H +  +IY +L  L  + ++LGYVP  D +LH+V 
Sbjct: 711 LIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVE 770

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + +K + L+ HSEK+A+AFGL+S   + K +R+ KNLRIC DCH + KYIS    REI+V
Sbjct: 771 EEQKEKLLFQHSEKIAVAFGLIS-TSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIV 829

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H   +G C+C + W
Sbjct: 830 RDANRFHHIKDGRCSCNEYW 849



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 200/434 (46%), Gaps = 26/434 (5%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNS 77
           +VH +  +S  Q D    N+LI+ YSK      +  +F  + S  +++SW+A++S  +N+
Sbjct: 87  LVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANN 146

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            +     L+ +      + PN+   A+  + C++     + G S+    +K        C
Sbjct: 147 NMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSV-GDSIFGFVVKTGYLQSDVC 205

Query: 138 -GSALVHFYSRFRSP-DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            G  L+  + + R    +A KVF+++ ER+ V +  MI    Q     +++ +F +M  S
Sbjct: 206 VGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILS 265

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA---GIV 252
                 + +SG + A A +  +   + +H  A+  GL  +  VG  LI+ Y K    G +
Sbjct: 266 GYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSM 325

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVLT 311
             AR++FD+ L   N  +W AM+ GY Q+G      L+LF  + +    P+ ++F + L 
Sbjct: 326 CAARKIFDQILD-HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLK 384

Query: 312 ALCN-AGLAGESEKWIERMKVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMP 366
           A  N A L    + +   +K+      G     C    LIS   R+GR++DA R A  + 
Sbjct: 385 ACANLAALRIGEQVFTHAVKL------GFSSVNCVANSLISMYARSGRIDDA-RKAFDIL 437

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
           FE +   +  ++   A +  ++ A ++   + D      SA+   A++LSG      + +
Sbjct: 438 FEKNLISYNTVIDAYAKNLNSEEALELFNEIED-QGMGASAFTF-ASLLSGAASIGTIGK 495

Query: 427 VRKVMKDRRVRKEG 440
             ++    RV K G
Sbjct: 496 GEQI--HARVIKSG 507


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/559 (36%), Positives = 313/559 (55%), Gaps = 11/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSNS 77
           +HA  +KS  Q    + + LI  YSK+ L   S ++F      +  +W+++IS  A +  
Sbjct: 76  IHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEE 135

Query: 78  P-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           P L++  F  M+     +  P+     S  K CA L    + G S+H L +K       F
Sbjct: 136 PVLAIQYFCRMIGE---NLCPDDHIFPSATKACAILGRCDV-GKSVHCLVIKTGYDVDVF 191

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GS+LV  Y++      A+ VFDE+  R+VV +  MI G+ Q     +++ +F +     
Sbjct: 192 VGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEG 251

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +    + +S  +R       +E  + IHG    +  D +  VG+ LI  Y K G++  A 
Sbjct: 252 LDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAY 311

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RVFDE + + N   WNAM+   AQ        +LF  +E  G  P+  +FL VL A  +A
Sbjct: 312 RVFDE-VPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHA 370

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E +K+   MK +Y++EPG +HY  ++  +GRAG+L++A  +   MP EP  +VW A
Sbjct: 371 GLVEEGKKYFALMK-KYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGA 429

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            ++   IHG  D+A+    ++ ++       +V+++N  +  GR+++ A+ RK+++DR V
Sbjct: 430 FITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGV 489

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE G SWIE   +VH F AGDR H R ++IY KL +L EE ER GYV     +L  VG 
Sbjct: 490 KKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGS 549

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK + + YHSE+LA+AFGL+S  P G+ +RI+KNLR+C DCH + K+IS++  R I+VR
Sbjct: 550 EEKNQTIRYHSERLAIAFGLIS-IPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVR 608

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+HRF +G C+C D W
Sbjct: 609 DNNRFHRFEDGKCSCADYW 627



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 138/287 (48%), Gaps = 11/287 (3%)

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
           S + L G  +H+  +K  L   P     L++FYS+ + P  + +VF+E   +    + ++
Sbjct: 67  SRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSV 126

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           I  FAQN   V ++  F  M   ++    +    A +A A L   +  + +H   + +G 
Sbjct: 127 ISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGY 186

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
           D +V VG+ L+D Y K G + +AR VFDE +   N ++W+ M+ GY Q G+    + LF 
Sbjct: 187 DVDVFVGSSLVDMYAKCGDIKEARNVFDE-MPHRNVVSWSGMIYGYTQLGEHEEAMRLFK 245

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM--KVRYKLEPGLEHYTCLISAMG 350
              + G   ++++  +V+  +C +    E  K I  +  K  Y L   +   + LIS   
Sbjct: 246 EALLEGLDVNDFTLSSVIR-VCGSATLLELGKQIHGLCFKTSYDLSGFVG--SSLISLYS 302

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA----DMASKM 393
           + G +E A R+   +P + +  +W A+L   A H       D+ +KM
Sbjct: 303 KCGLIEGAYRVFDEVPIK-NLGMWNAMLIACAQHAHTKEAFDLFTKM 348


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 313/556 (56%), Gaps = 4/556 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H+R  K+   +D  + N LI+ YS+   +  +  +F+ +   +++SWTA+I   + S  
Sbjct: 350 IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGF 409

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                            PN+ T  S+   C+S + A  +G  +H   ++  L      G+
Sbjct: 410 GAEALTVYQEMQQAGVEPNRVTYTSILNACSSPA-ALEWGRRIHQQVVEAGLATDAHVGN 468

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            LV+ YS   S  +A++VFD + +RD+V Y AMI G+A ++   ++L +F  ++   +  
Sbjct: 469 TLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKP 528

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                   L A A   ++E  R IH      G   +  VG  L+  Y K G  SDA  VF
Sbjct: 529 DKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVF 588

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E ++  N I+WNA++ G AQ G     L+LF  ++M G  PD  +F+++L+A  +AGL 
Sbjct: 589 -EKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLL 647

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E  ++   M   + + P +EHY C++  +GRAG+L++AE +   MPF+ +  +W ALL 
Sbjct: 648 EEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLG 707

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IHG   +A +  +  + ++  +   YV ++++ +  G WD  A++RK+M+ R V KE
Sbjct: 708 ACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKE 767

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            GRSWI+V  K+H F+A DR H ++E IY +L  L    +  GYVP    ++H+V + EK
Sbjct: 768 PGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEK 827

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             A+ +HSE+LA+A+GL+S  P G  + I KNLR+C DCH + K+IS++V+REI+ RDVN
Sbjct: 828 ENAVCHHSERLAIAYGLIS-TPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVN 886

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 887 RFHHFKDGVCSCGDYW 902



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 186/387 (48%), Gaps = 19/387 (4%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + VH+R L +  ++D ++   L+  Y+K        ++F  + + ++++W  +I   +  
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                +  ++  M R      +PN+ T   L   C + S A  +G  +HS   K      
Sbjct: 307 GYWEEASEVYNQMQRE---GVMPNKITYVILLNACVN-SAALHWGKEIHSRVAKAGFTSD 362

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +AL+  YSR  S  +A+ VFD++  +DV+ + AMI G A++    ++L+V+ +M+ 
Sbjct: 363 IGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQ 422

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + V       +  L A +  AA+E  R IH   V +GL  +  VG  L++ Y   G V D
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKD 482

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR+VFD  +   + +A+NAM+ GYA        L+LF  L+  G  PD+ +++ +L A  
Sbjct: 483 ARQVFDRMIQ-RDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 541

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYT----CLISAMGRAGRLEDAERIAMAMPFEPD 370
           N+G    S +W   +    + + G    T     L+S   + G   DA  +   M  + +
Sbjct: 542 NSG----SLEWAREIHTLVR-KGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT-KRN 595

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRL 397
              W A++  SA HG+   A ++ +R+
Sbjct: 596 VISWNAIIGGSAQHGRGQDALQLFERM 622



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 168/374 (44%), Gaps = 15/374 (4%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS 75
           R VH   ++  +  D+   N LI  Y +   +  + +++  +      + SW A++  + 
Sbjct: 43  RQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYI 102

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
                  +L +   M +H      P++ T+ S   +C S   A  +G  +H  +++  L 
Sbjct: 103 QYGYIEKALKLLRQMQQH---GLAPDRTTIMSFLSSCKSPG-ALEWGREIHFQAMQAGLL 158

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                 + +++ Y++  S + A++VFD++ ++ VV +   I G+A   R   +  +F  M
Sbjct: 159 FDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKM 218

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
               V          L A +  AA++  + +H   + +G + +  VGT L+  Y K G  
Sbjct: 219 EQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSY 278

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            D R+VF E L   + IAWN M+ G A+ G      E+++ ++  G  P++ +++ +L A
Sbjct: 279 KDCRQVF-EKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNA 337

Query: 313 LCN-AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
             N A L    E      K  +  + G+++   LIS   R G ++DA R+        D 
Sbjct: 338 CVNSAALHWGKEIHSRVAKAGFTSDIGVQN--ALISMYSRCGSIKDA-RLVFDKMVRKDV 394

Query: 372 AVWRALLSFSAIHG 385
             W A++   A  G
Sbjct: 395 ISWTAMIGGLAKSG 408


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 331/572 (57%), Gaps = 13/572 (2%)

Query: 13  NTSTDPRI------VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV 65
           N  T+P +      VH   +++  + +  +  +L+  Y+K   +S +  +F+ +P  N+V
Sbjct: 156 NAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVV 215

Query: 66  SWTALISAHSNSPLSLNIFLSMLRH-PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
           +WT LI+ ++     +++ L +L         PN+ T AS+ + C + + A   G  +H 
Sbjct: 216 TWTLLIAGYAQQG-QVDVALELLETMQQAEVAPNKITFASILQGCTTPA-ALEHGKKVHR 273

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
             ++     + +  ++L+  Y +    + A+K+F ++  RDVV + AM+ G+AQ     +
Sbjct: 274 YIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDE 333

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           ++++F  M+   +       +  L + +  A +++ + IH   V +G + +V + + L+ 
Sbjct: 334 AINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVS 393

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY-AQQGDQSTVLELFHLLEMRGFAPDE 303
            Y K G + DA  VF++ +S  N +AW A++ G  AQ G     LE F  ++ +G  PD+
Sbjct: 394 MYAKCGSMDDASLVFNQ-MSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDK 452

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            +F +VL+A  + GL  E  K    M + Y ++P +EHY+C +  +GRAG LE+AE + +
Sbjct: 453 VTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVIL 512

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           +MPF P  +VW ALLS   +H   +   +  + ++ ++P DD AYV ++++ +  GR+++
Sbjct: 513 SMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYED 572

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
             +VR+VM+ R V KE G+SWIEV GKVHVF   D+ H  +E IY +L +L E+ + +GY
Sbjct: 573 AEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGY 632

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           VP    +LH+V + +K   L+ HSE+LA+ +GL+   P G  +RIVKNLR+C DCH + K
Sbjct: 633 VPDTRFVLHDVDEEQKERILFSHSERLAITYGLMK-TPPGMPIRIVKNLRVCGDCHTATK 691

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +IS+VV REI+ RD  R+H F +G C+CGD W
Sbjct: 692 FISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 200/412 (48%), Gaps = 15/412 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA  LKS  Q +R + N L++ Y+K   L+ + R+F+ I   NIVSWTA+I A    
Sbjct: 67  REVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAG 126

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L  F            P++ T  SL     +       G  +H   ++  L  +P  
Sbjct: 127 NKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTN-PELLQLGQKVHMEIVEAGLELEPRV 185

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G++LV  Y++      A+ +FD + E++VV +  +I G+AQ  ++  +L +   M+ ++V
Sbjct: 186 GTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEV 245

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                  +  L+     AA+E  + +H + + SG  R + V   LI  Y K G + +AR+
Sbjct: 246 APNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARK 305

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F  +L   + + W AM+ GYAQ G     + LF  ++ +G  PD+ +F +VLT+  +  
Sbjct: 306 LFS-DLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPA 364

Query: 318 LAGESEKWIERM-KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
              E ++  +++    Y L+  L+  + L+S   + G ++DA  +   M  E +   W A
Sbjct: 365 FLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTA 421

Query: 377 LLS-FSAIHGKADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           +++   A HG+   A     +M K+   I P D   +  V +  + VG  +E
Sbjct: 422 IITGCCAQHGRCREALEYFDQMKKQ--GIKP-DKVTFTSVLSACTHVGLVEE 470



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 4/293 (1%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           L + CA L  +   G  +H+  LK  +    +  + L+  Y++  S  +A++VFD IR+R
Sbjct: 53  LLQECARL-RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDR 111

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
           ++V + AMI  F   ++ +++   +  M+ +            L A      ++  + +H
Sbjct: 112 NIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVH 171

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
              V +GL+    VGT L+  Y K G +S AR +FD  L   N + W  ++AGYAQQG  
Sbjct: 172 MEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFD-RLPEKNVVTWTLLIAGYAQQGQV 230

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              LEL   ++    AP++ +F ++L   C    A E  K + R  ++      L     
Sbjct: 231 DVALELLETMQQAEVAPNKITFASILQG-CTTPAALEHGKKVHRYIIQSGYGRELWVVNS 289

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           LI+   + G LE+A ++   +P   D   W A+++  A  G  D A  + +R+
Sbjct: 290 LITMYCKCGGLEEARKLFSDLPHR-DVVTWTAMVTGYAQLGFHDEAINLFRRM 341



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 9/221 (4%)

Query: 176 FAQNSRLVDSLSVFADM--RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
             +  RL ++L +   M  + + V S ++   G L+  A L ++EQ R +H   + SG+ 
Sbjct: 22  LCKTGRLKEALGIMNTMILQGTRVYSDVF--RGLLQECARLRSLEQGREVHAAILKSGIQ 79

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
            N  +   L+  Y K G ++DARRVFD ++   N ++W AM+  +          + +  
Sbjct: 80  PNRYLENTLLSMYAKCGSLTDARRVFD-SIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEK-WIERMKVRYKLEPGLEHYTCLISAMGRA 352
           +++ G  PD+ +F+++L A  N  L    +K  +E ++   +LEP +   T L+    + 
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKC 196

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           G +  A  I   +P E +   W  L++  A  G+ D+A ++
Sbjct: 197 GDISKARVIFDRLP-EKNVVTWTLLIAGYAQQGQVDVALEL 236


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 193/580 (33%), Positives = 323/580 (55%), Gaps = 40/580 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D S +N +I+ + +      +L LF+ +  P+IVSW ++I+ + +      +L  F  ML
Sbjct: 210 DTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFML 269

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR- 147
           +  +L   P++ TL S+   CA+   +   G  +H+  ++  +      G+AL+  Y++ 
Sbjct: 270 KSSSLK--PDKFTLGSVLSACAN-RESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKS 326

Query: 148 ----------------------FRS----------PDNAKKVFDEIRERDVVCYGAMIVG 175
                                 F S           D A+ +FD ++ RDVV + AMIVG
Sbjct: 327 GAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVG 386

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           +AQN  + D+L +F  M         Y ++  L   + LA+++  + +H  A+      +
Sbjct: 387 YAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSS 446

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           V VG  LI  Y ++G + DAR++F+   S  +++ W +M+   AQ G  +  +ELF  + 
Sbjct: 447 VSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKML 506

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
                PD  +++ VL+A  + GL  + + +   MK  + +EP   HY C+I  +GRAG L
Sbjct: 507 RINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLL 566

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
           E+A      MP EPD   W +LLS   +H   D+A    ++L+ I+P +  AY+ +AN L
Sbjct: 567 EEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTL 626

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           S  G+W++ A+VRK MKD+ V+KE G SW+++K KVH+F   D +H + + IY  ++++ 
Sbjct: 627 SACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIW 686

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
           +E +++G++P  + +LH++    K + L +HSEKLA+AF L++  P+  T+RI+KNLR+C
Sbjct: 687 KEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALIN-TPKHTTVRIMKNLRVC 745

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            DCH + +YIS +VEREI+VRD  R+H F +GSC+C D W
Sbjct: 746 NDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 217/496 (43%), Gaps = 75/496 (15%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           LN   +  ++S   R+     LK++ +    +N +++ ++K+  L  + R+F+ IP P+ 
Sbjct: 55  LNLYVKTGSSSDAHRLFDEMPLKTTFS----WNTILSAHAKAGNLDSARRVFDEIPQPDS 110

Query: 65  VSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
           VSWT +I  +++  L  +   + LR  +    P Q T  ++  +CA+ + A   G  +HS
Sbjct: 111 VSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAA-AQALDVGKKVHS 169

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
             +KL         ++L++ Y++      AK VFD +R +D   +  MI    Q  +   
Sbjct: 170 FVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDL 229

Query: 185 SLSVFADMRSSDVGS-----TMYCVSG---------------------------ALRAAA 212
           +L++F  M   D+ S     T YC  G                            L A A
Sbjct: 230 ALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACA 289

Query: 213 ELAAMEQCRVIHGHAVVSGLD---------------------------------RNVIVG 239
              +++  + IH H V + +D                                  NVI  
Sbjct: 290 NRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAF 349

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           T L+DGY K G +  AR +FD +L   + +AW AM+ GYAQ G  S  L LF L+   G 
Sbjct: 350 TSLLDGYFKIGDIDPARAIFD-SLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGP 408

Query: 300 APDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
            P+ Y+  AVL+ +  + LA  +  K +  + +R +    +     LI+   R+G ++DA
Sbjct: 409 KPNNYTLAAVLSVI--SSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDA 466

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSG 417
            +I   +    D   W +++   A HG  + A ++ ++++ IN   D   YV V +  + 
Sbjct: 467 RKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTH 526

Query: 418 VGRWDEVAEVRKVMKD 433
           VG  ++      +MK+
Sbjct: 527 VGLVEQGKSYFNLMKN 542



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 221 RVIHGHAVVSGLDR-NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
           R IH   +  GL    V +   L++ Y K G  SDA R+FDE + +  + +WN +++ +A
Sbjct: 32  RCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDE-MPLKTTFSWNTILSAHA 90

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           + G+  +   +F  +      PD  S+  ++    + GL   +     RM V   + P  
Sbjct: 91  KAGNLDSARRVFDEIPQ----PDSVSWTTMIVGYNHLGLFKSAVHAFLRM-VSSGISPTQ 145

Query: 340 EHYTCLISAMGRAGRLEDAERI 361
             +T ++++   A  L+  +++
Sbjct: 146 FTFTNVLASCAAAQALDVGKKV 167


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 315/559 (56%), Gaps = 5/559 (0%)

Query: 19  RIVHAR-ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA  + + ++ D S+ N L+T Y++   L  + ++F  +P  ++VSW+A+I+A + +
Sbjct: 241 RKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAET 300

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L         +       PN  T AS+   CAS+      G ++H   L          
Sbjct: 301 DLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD-LRAGRAVHDQILGNGYKITLVN 359

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSD 196
           G+ALV  Y+ + S D A+ +FD+I  RD   +  +I G+++       L ++ +M+ ++ 
Sbjct: 360 GTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTK 419

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V +T    S  + A A L A    R  H      G+  + ++ T L++ Y + G +  AR
Sbjct: 420 VPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESAR 479

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VFD+ +S  +++AW  ++AGYA+ G+    L L+  +E+ G  P E +F+ VL A  +A
Sbjct: 480 QVFDK-MSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHA 538

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  + ++    ++  Y + P + HY+C+I  + RAGRL DAE +  AMP EP+   W +
Sbjct: 539 GLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSS 598

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL  S IH     A+    ++  ++P D ++YV+++NV +  G    +A VR  M  R V
Sbjct: 599 LLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGV 658

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G SWIEV  ++H F  GD  H R ++I+ +L  L  + +  GYVP  +E+LH+VG+
Sbjct: 659 KKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGE 718

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
           +EK   L  HSEKLA+AFGL++ AP G TLRI   LRIC DCH + K+IS +  REI+VR
Sbjct: 719 KEKELLLRLHSEKLAIAFGLIATAP-GTTLRIFNTLRICHDCHSAVKFISAIARREIIVR 777

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D +R+H+F +G C+CGD W
Sbjct: 778 DSSRFHKFRDGQCSCGDYW 796



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 150/304 (49%), Gaps = 16/304 (5%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           R +H R   ++ A+  + N ++  Y K   ++ +   F+ I   N  SW ++++A++ + 
Sbjct: 44  RQIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNG 103

Query: 79  ---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS-LSLKLSLHDK 134
               +L+++  M         PN     ++   CAS+  A   G ++HS +S    L   
Sbjct: 104 HYRAALDLYKRM------DLQPNPVVYTTVLGACASI-EALEEGKAIHSRISGTKGLKLD 156

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               ++L+  Y++  S ++AK++F+ +   R V  + AMI  +AQ+    +++ ++ DM 
Sbjct: 157 VILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM- 215

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             DV  ++   +  L A + L  ++Q R IH      G + ++ +   L+  Y +   + 
Sbjct: 216 --DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLD 273

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA ++F + L   + ++W+AM+A +A+       +E +  +++ G  P+ Y+F +VL A 
Sbjct: 274 DAAKIF-QRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLAC 332

Query: 314 CNAG 317
            + G
Sbjct: 333 ASVG 336



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 11/246 (4%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F G+ +V  Y +  S  +A+  FD I  ++   +G+M+  +AQN     +L ++  M   
Sbjct: 59  FLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM--- 115

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGH-AVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           D+       +  L A A + A+E+ + IH   +   GL  +VI+   L+  Y K G + D
Sbjct: 116 DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLED 175

Query: 255 ARRVFDENLSVLNSIA-WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           A+R+F E +S   S++ WNAM+A YAQ G     + L+  +++    P   +F +VL+A 
Sbjct: 176 AKRLF-ERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE---PSVRTFTSVLSAC 231

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            N GL  +  K I  +      E  L     L++   R   L+DA +I   +P   D   
Sbjct: 232 SNLGLLDQGRK-IHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLP-RRDVVS 289

Query: 374 WRALLS 379
           W A+++
Sbjct: 290 WSAMIA 295



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 10/228 (4%)

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           ALR   +L   E  R IH   +      NV +G  ++  YGK G V+ AR  FD  ++  
Sbjct: 33  ALRQCQDL---ESVRQIHDR-ISGAASANVFLGNEIVRAYGKCGSVASARVAFDA-IARK 87

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N  +W +M+  YAQ G     L+L+  ++++   P+   +  VL A  +     E +   
Sbjct: 88  NDYSWGSMLTAYAQNGHYRAALDLYKRMDLQ---PNPVVYTTVLGACASIEALEEGKAIH 144

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
            R+     L+  +     L++   + G LEDA+R+   M      + W A+++  A  G 
Sbjct: 145 SRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGH 204

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            + A ++ + + D+ P     +  V +  S +G  D+  ++  ++  R
Sbjct: 205 FEEAIRLYEDM-DVEP-SVRTFTSVLSACSNLGLLDQGRKIHALISSR 250


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 207/564 (36%), Positives = 323/564 (57%), Gaps = 18/564 (3%)

Query: 19  RIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA    S+  D  +  N I N Y+K   L  +  LF+ +P+ ++VSWT LIS +S S
Sbjct: 125 RAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQS 184

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFK---TCASLSHAFLFGLSLHSLSLKLSL 131
                +L +F  ML    L F PN+ TL+SL K   T  S  H    G  LH+ SLK   
Sbjct: 185 GQASEALALFPKMLH---LGFQPNEFTLSSLLKASGTGPSDHH----GRQLHAFSLKYGY 237

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                 GS+L+  Y+R+     AK +F+ +  ++VV + A+I G A+       + +F  
Sbjct: 238 DMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQ 297

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M       T +  S  L A A   ++EQ + +H H + SG      +G  LID Y K+G 
Sbjct: 298 MLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGS 356

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA++VF   L   + ++WN++++GYAQ G  +  L+LF  +      P+E +FL+VLT
Sbjct: 357 IKDAKKVF-RRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLT 415

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  ++GL  E + + E MK ++K+E  + H+  ++  +GRAGRL +A +    MP +P A
Sbjct: 416 ACSHSGLLDEGQYYFELMK-KHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTA 474

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           AVW ALL    +H   D+     +++ +++P+D   +V+++N+ +  GR  + A+VRK+M
Sbjct: 475 AVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMM 534

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           K+  V+KE   SW+E++ +VHVF+A D  H   E+I     ++  + + +GYVP    +L
Sbjct: 535 KESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVL 594

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
             +  +++   L YHSEKLALAF ++   P G T+RI KN+RIC DCH +FK+ SRV+ R
Sbjct: 595 FFMNQQDRELKLQYHSEKLALAFAVLK-TPPGLTIRIKKNIRICGDCHSAFKFASRVLGR 653

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD NR+H FL+G C+C D W
Sbjct: 654 EIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 177/347 (51%), Gaps = 9/347 (2%)

Query: 96  LPNQRTLAS-LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
           L  +RTL S +   C  L      G ++H+     +  D     + +++ Y++  S + A
Sbjct: 101 LEPERTLYSKMLNKCTYLR-KLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           + +FD++  +D+V +  +I G++Q+ +  ++L++F  M         + +S  L+A+   
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            +    R +H  ++  G D NV VG+ L+D Y +   + +A+ +F+ +L+  N ++WNA+
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFN-SLAAKNVVSWNAL 278

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           +AG+A++G+   V+ LF  +  +GF P  +++ +VL   C +  + E  KW+    ++  
Sbjct: 279 IAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLA--CASSGSLEQGKWVHAHVIKSG 336

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
            +P       LI    ++G ++DA+++   +  + D   W +++S  A HG    A ++ 
Sbjct: 337 GQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQHGLGAEALQLF 395

Query: 395 KRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
           ++++   + P ++  ++ V    S  G  DE     ++MK  ++  +
Sbjct: 396 EQMLKAKVQP-NEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQ 441


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 315/559 (56%), Gaps = 5/559 (0%)

Query: 19  RIVHAR-ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA  + + ++ D S+ N L+T Y++   L  + ++F  +P  ++VSW+A+I+A + +
Sbjct: 240 RKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAET 299

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L         +       PN  T AS+   CAS+      G ++H   L          
Sbjct: 300 DLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD-LRAGRAVHDQILGNGYKITLVN 358

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSD 196
           G+ALV  Y+ + S D A+ +FD+I  RD   +  +I G+++       L ++ +M+ ++ 
Sbjct: 359 GTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTK 418

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V +T    S  + A A L A    R  H      G+  + ++ T L++ Y + G +  AR
Sbjct: 419 VPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESAR 478

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VFD+ +S  +++AW  ++AGYA+ G+    L L+  +E+ G  P E +F+ VL A  +A
Sbjct: 479 QVFDK-MSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHA 537

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  + ++    ++  Y + P + HY+C+I  + RAGRL DAE +  AMP EP+   W +
Sbjct: 538 GLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSS 597

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL  S IH     A+    ++  ++P D ++YV+++NV +  G    +A VR  M  R V
Sbjct: 598 LLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGV 657

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G SWIEV  ++H F  GD  H R ++I+ +L  L  + +  GYVP  +E+LH+VG+
Sbjct: 658 KKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGE 717

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
           +EK   L  HSEKLA+AFGL++ AP G TLRI   LRIC DCH + K+IS +  REI+VR
Sbjct: 718 KEKELLLRLHSEKLAIAFGLIATAP-GTTLRIFNTLRICHDCHSAVKFISAIARREIIVR 776

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D +R+H+F +G C+CGD W
Sbjct: 777 DSSRFHKFRDGQCSCGDYW 795



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 150/303 (49%), Gaps = 15/303 (4%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           R +H R   ++ A+  + N ++  Y K   ++ +   F+ I   N  SW ++++A++ + 
Sbjct: 44  RQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNG 103

Query: 79  ---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS-LSLKLSLHDK 134
               +L+++  M         PN     ++   CAS+  A   G ++HS +S    L   
Sbjct: 104 HYRAALDLYKRM------DLQPNPVVYTTVLGACASIK-ALEEGKAIHSRISGTKGLKLD 156

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               ++L+  Y++  S ++AK++F+ +  R V  + AMI  +AQ+    +++ ++ DM  
Sbjct: 157 VILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM-- 214

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            DV  ++   +  L A + L  ++Q R IH      G + ++ +   L+  Y +   + D
Sbjct: 215 -DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDD 273

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A ++F + L   + ++W+AM+A +A+       +E +  +++ G  P+ Y+F +VL A  
Sbjct: 274 AAKIF-QRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACA 332

Query: 315 NAG 317
           + G
Sbjct: 333 SVG 335


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 189/537 (35%), Positives = 304/537 (56%), Gaps = 7/537 (1%)

Query: 43  YSKSNLLSYSL----RLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           YSK    SY L    ++F  +P  +IVSW  +IS ++ + +  +  + +         P+
Sbjct: 176 YSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPD 235

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
             TL+S+    A   +  L G  +H  +++       F GS+L+  Y++    D++ +VF
Sbjct: 236 SFTLSSVLPIFAEYVN-LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF 294

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
             + + D + + ++I G  QN    + L  F  M  + +       S  + A A L  + 
Sbjct: 295 YMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLH 354

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
             + +HG+ + S  D NV + + L+D Y K G +  AR +FD+ + + + ++W AM+ GY
Sbjct: 355 LGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDK-MELYDMVSWTAMIMGY 413

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A  G     + LF  +E+ G  P+  +F+AVLTA  +AGL  E+ K+   M   Y++ PG
Sbjct: 414 ALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPG 473

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           LEHY  +   +GR GRLE+A      M  EP  +VW  LL+   +H   ++A K+ K+L 
Sbjct: 474 LEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLF 533

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
            ++P +  AYV+++N+ S  GRW +  ++R  M+D+ ++K+   SWIE+K KVH F+AGD
Sbjct: 534 TVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGD 593

Query: 459 RMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVS 518
           + H   + I   L  L+E+ ER GYV    E+LH+V + +KR  L  HSE+LA+ FG++S
Sbjct: 594 KSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIIS 653

Query: 519 GAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             P G T+R+ KNLR+C DCH + K+IS++V REIVVRD +R+H F +G C+CGD W
Sbjct: 654 -TPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 219/467 (46%), Gaps = 42/467 (8%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PN 63
           L Q P    + +  + +HA+ L++S    S+ + +++ YS  NLL  SL +FN +PS P 
Sbjct: 11  LLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPT 70

Query: 64  IVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
            ++W ++I  +++  L   SL+ F+ ML        P+     S+ K+C +L     FG 
Sbjct: 71  TLAWKSIIRCYTSHGLFLHSLSFFIQMLASGK---YPDHNVFPSVLKSC-TLMKDLRFGE 126

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA---KKVFDE----------------- 160
           S+H   ++L +    +  +AL++ YS+F S +     KKVFDE                 
Sbjct: 127 SVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYL 186

Query: 161 ---------IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
                    + +RD+V +  +I G AQN    D+L +  +M ++D+    + +S  L   
Sbjct: 187 GSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIF 246

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           AE   + + + IHG+A+ +G D +V +G+ LID Y K   V D+ RVF   L   + I+W
Sbjct: 247 AEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF-YMLPQHDGISW 305

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N+++AG  Q G     L+ F  + +    P+  SF +++ A C         K +    +
Sbjct: 306 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPA-CAHLTTLHLGKQLHGYII 364

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           R + +  +   + L+    + G +  A  I   M    D   W A++   A+HG A  A 
Sbjct: 365 RSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGHAYDAI 423

Query: 392 KMGKRL-IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM-KDRRV 436
            + KR+ ++    +  A++ V    S  G  DE  +    M +D R+
Sbjct: 424 SLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRI 470


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 193/536 (36%), Positives = 307/536 (57%), Gaps = 10/536 (1%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQ 99
           Y K   +S +  +F+ +PS ++VSWT LI+ ++ + +   ++ +   MLR     F PN 
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLR---ARFRPNG 58

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
            T  SL K   +     + G  +H+L++K +  +  + GSAL+  Y+R    D A  VFD
Sbjct: 59  FTFTSLLKATGACGGCSI-GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFD 117

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
            +  ++ V + A+I GFA+ +    +L  FA+M+ +  G+T +  S    A A + A+EQ
Sbjct: 118 RLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQ 177

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            R +H H + SG      VG  ++  Y K+G + DAR+VFD  +   + + WN M+   A
Sbjct: 178 GRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDR-MDKRDLVTWNTMLTALA 236

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G     +  F  +   G   ++ +FL+VLTA  + GL  E + + + MK  Y ++P +
Sbjct: 237 QYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMK-DYNVQPEI 295

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           +HY   +  +GRAG L++A      MP EP AAVW ALL    +H  A M       + +
Sbjct: 296 DHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFE 355

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDR 459
           ++P D    V++ N+ +  G+W++ A VRK+MK   V+KE   SW++++  VH+F+A D 
Sbjct: 356 LDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDD 415

Query: 460 MHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG 519
            H ++ DIY    E+    ++ GYVP    +L ++ ++E+   L YHSEK+ALAF L++ 
Sbjct: 416 THPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALIN- 474

Query: 520 APRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            P G ++RI+KN+RIC DCH +FKY+S+V +REIVVRD NR+H F  GSC+CGD W
Sbjct: 475 MPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 115/244 (47%), Gaps = 18/244 (7%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HS 75
           +HA A+K +  D  +Y  + L+  Y++   +  ++ +F+ + S N VSW ALI+     +
Sbjct: 80  MHALAVKYNW-DEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKA 138

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           +   +L  F  M R+    F     T +S+F   A +  A   G  +H+  +K       
Sbjct: 139 DGETTLMKFAEMQRN---GFGATHFTYSSMFSAFARIG-ALEQGRWVHAHLIKSGQKLTA 194

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F G+ ++  Y++  S  +A+KVFD + +RD+V +  M+   AQ     ++++ F ++R  
Sbjct: 195 FVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKC 254

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCR----VIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
            +          L A +    +++ +    ++  + V   +D  V      +D  G+AG+
Sbjct: 255 GIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYV----SFVDLLGRAGL 310

Query: 252 VSDA 255
           + +A
Sbjct: 311 LKEA 314


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 321/562 (57%), Gaps = 14/562 (2%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN-- 76
           VHA  +K+      +Y    LI  Y K + L  +  +F+ +P  N+VSWTA+ISA+S   
Sbjct: 80  VHAHMIKTHYLP-CVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRG 138

Query: 77  -SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +  +L++F+ MLR  T    PN+ T A++  +C   S  F+ G  +HS  +KL+     
Sbjct: 139 YASQALSLFVQMLRSGTE---PNEFTFATVLTSCIG-SSGFVLGRQIHSHIIKLNYEAHV 194

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           + GS+L+  Y++      A+ +F  + ERDVV   A+I G+AQ     ++L +F  ++  
Sbjct: 195 YVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQRE 254

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            + S     +  L A + LAA++  + +H H + S +   V++   LID Y K G ++ A
Sbjct: 255 GMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYA 314

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALC 314
           RR+FD  L     I+WNAM+ GY++ G+   VLELF+L+ +     PD  + LAVL+   
Sbjct: 315 RRIFD-TLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCS 373

Query: 315 NAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           + GL  +  + + +    +  ++P  +HY C++  +GRAGR+E A      MPFEP AA+
Sbjct: 374 HGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAI 433

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W  LL   ++H   D+   +G +L+ I P +   YVI++N+ +  GRW++V  +R +M  
Sbjct: 434 WGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLK 493

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           + V KE GRSWIE+   +H F A D  H R E++  K+ EL    +  GYVP    +LH+
Sbjct: 494 KAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHD 553

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + +K + L  HSEKLAL FGL++  P    +R++KNLRIC DCH   KY S++  RE+
Sbjct: 554 VDEEQKEKILLSHSEKLALTFGLIA-TPESVPIRVIKNLRICVDCHNFAKYTSKIYGREV 612

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
            +RD NR+HR + G C+CGD W
Sbjct: 613 SLRDKNRFHRIVGGKCSCGDYW 634



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 142/300 (47%), Gaps = 6/300 (2%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H+  +K       +  + L+ FY +  S  +A+ VFD + ER+VV + AMI  ++Q
Sbjct: 77  GQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQ 136

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
                 +LS+F  M  S      +  +  L +    +     R IH H +    + +V V
Sbjct: 137 RGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYV 196

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           G+ L+D Y K G + +AR +F + L   + ++  A+++GYAQ G     LELF  L+  G
Sbjct: 197 GSSLLDMYAKDGKIHEARGIF-QCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREG 255

Query: 299 FAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
              +  ++ +VLTAL  +GLA  +  K +    +R ++   +     LI    + G L  
Sbjct: 256 MQSNYVTYTSVLTAL--SGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTY 313

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           A RI   +  E     W A+L   + HG+     ++   +ID N     +  ++A VLSG
Sbjct: 314 ARRIFDTL-HERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLA-VLSG 371



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 4/213 (1%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+ + + +H H + +     V + T LI  Y K   + DAR VFD  +   N ++W AM+
Sbjct: 73  AIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDV-MPERNVVSWTAMI 131

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           + Y+Q+G  S  L LF  +   G  P+E++F  VLT+ C         + I    ++   
Sbjct: 132 SAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTS-CIGSSGFVLGRQIHSHIIKLNY 190

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           E  +   + L+    + G++ +A  I   +P E D     A++S  A  G  + A ++ +
Sbjct: 191 EAHVYVGSSLLDMYAKDGKIHEARGIFQCLP-ERDVVSCTAIISGYAQLGLDEEALELFR 249

Query: 396 RLIDINPYDD-SAYVIVANVLSGVGRWDEVAEV 427
           RL       +   Y  V   LSG+   D   +V
Sbjct: 250 RLQREGMQSNYVTYTSVLTALSGLAALDHGKQV 282


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 198/546 (36%), Positives = 308/546 (56%), Gaps = 3/546 (0%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
           ++D  +   L+  Y K   ++ + R+F+++ + +I+SWT +I A++ S      +  ML+
Sbjct: 161 ESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQ 220

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                F PN  T  S+   CAS   A  +   +H  +L   L      G+ALV  Y++  
Sbjct: 221 MEQEGFKPNAITYVSILNACAS-EGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSG 279

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           S D+A+ VFD ++ RDVV +  MI  FA++ R  ++  +F  M++             L 
Sbjct: 280 SIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILN 339

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A A   A+E  + IH HA+ SGL+ +V VGT L+  Y K+G + DAR VFD  + V N +
Sbjct: 340 ACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDR-MKVRNVV 398

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +WNAM++G AQ G     LE+F  +   G  PD  +F+AVL+A  +AGL  E       M
Sbjct: 399 SWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAM 458

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
              Y +EP + H  C++  +GRAGRL +A+     M  +PD A W ALL     +G  ++
Sbjct: 459 TQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVEL 518

Query: 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG 449
              + K  + ++P + + YV+++N+ +  G+WD V+ VR +M++R +RKE GRSWIEV  
Sbjct: 519 GELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDN 578

Query: 450 KVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEK 509
           K+H FL  D  H   ++I     +++E+ +  GY+P    +L N   ++K   +  HSEK
Sbjct: 579 KIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEK 638

Query: 510 LALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSC 569
           LA+ +GL+   P G  +R+ KNLR+C DCH + K IS+V  REI+VRD NR+H F +G C
Sbjct: 639 LAIVYGLMH-TPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVC 697

Query: 570 TCGDLW 575
           +CGD W
Sbjct: 698 SCGDYW 703



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 206/433 (47%), Gaps = 22/433 (5%)

Query: 1   MALDLNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHI 59
           M +++ ++   Q      + VH   +KS  + +  + NNL+  Y +   L  +  +F+ +
Sbjct: 30  MYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDAL 89

Query: 60  PSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
              +  SW A+I+    H ++  ++ +F  M         PN  T   + K CASLS A 
Sbjct: 90  VKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHE---GVQPNAGTYMIILKACASLS-AL 145

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
            +G  +H+      L      G+AL+  Y +  S + A+++FD +   D++ +  MI  +
Sbjct: 146 KWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAY 205

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           AQ+    ++  +   M               L A A   A++  + +H HA+ +GL+ +V
Sbjct: 206 AQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDV 265

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            VGT L+  Y K+G + DAR VFD  + V + ++WN M+  +A+ G      +LF  ++ 
Sbjct: 266 RVGTALVQMYAKSGSIDDARVVFDR-MKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQT 324

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE----HYTCLISAMGRA 352
            G  PD   FL++L A  +AG    + +W++++  R+ L+ GLE      T L+    ++
Sbjct: 325 EGCKPDAIMFLSILNACASAG----ALEWVKKIH-RHALDSGLEVDVRVGTALVHMYSKS 379

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVI 410
           G ++DA  +   M    +   W A++S  A HG    A ++ +R+    + P D   +V 
Sbjct: 380 GSIDDARVVFDRMKVR-NVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKP-DRVTFVA 437

Query: 411 VANVLSGVGRWDE 423
           V +  S  G  DE
Sbjct: 438 VLSACSHAGLVDE 450


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 323/560 (57%), Gaps = 12/560 (2%)

Query: 21   VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
            +HA A+K+    D  +   LI  YSKS  +  +  LF +    ++ SW A++  +    +
Sbjct: 1030 IHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGD 1089

Query: 77   SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             P +L +++ M      +   NQ TLA+  K    L      G  + ++ +K   +   F
Sbjct: 1090 FPKALRLYILMQESGERA---NQITLANAAKAAGGLV-GLKQGKQIQAVVVKRGFNLDLF 1145

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
              S ++  Y +    ++A+++F+EI   D V +  MI G  +N +   +L  +  MR S 
Sbjct: 1146 VISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSK 1205

Query: 197  VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
            V    Y  +  ++A + L A+EQ R IH + V      +  V T L+D Y K G + DAR
Sbjct: 1206 VQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDAR 1265

Query: 257  RVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             +F   N S + S  WNAM+ G AQ G+    L+ F  ++ RG  PD  +F+ VL+A  +
Sbjct: 1266 GLFKRTNTSRIAS--WNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSH 1323

Query: 316  AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            +GL  E+ +    M+  Y +EP +EHY+CL+ A+ RAGR+ +AE++  +MPFE  A+++R
Sbjct: 1324 SGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYR 1383

Query: 376  ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
             LL+   +    +   ++ ++L+ + P D +AYV+++NV +   +W+ VA  R +M+   
Sbjct: 1384 TLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKAN 1443

Query: 436  VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
            V+K+ G SW+++K KVH+F+AGDR HE T+ IY K+  +M+     GY+P  D  L +V 
Sbjct: 1444 VKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVE 1503

Query: 496  DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
            + +K  +L+YHSEKLA+A+GL+   P   TLR++KNLR+C DCH + KYIS+V ERE+V+
Sbjct: 1504 EEDKECSLYYHSEKLAIAYGLMK-TPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVL 1562

Query: 556  RDVNRYHRFLNGSCTCGDLW 575
            RD NR+H F +G C+CGD W
Sbjct: 1563 RDANRFHHFRSGVCSCGDYW 1582



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 174/362 (48%), Gaps = 13/362 (3%)

Query: 34   SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
            S+ N LI  Y K+  +S +  +F  +   ++VSW  +IS  + S L   S+ +F+ +LR 
Sbjct: 942  SVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRG 1001

Query: 91   PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
                 LP+Q T+AS+ + C+SL         +H+ ++K  +    F  + L+  YS+   
Sbjct: 1002 ---GLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGK 1058

Query: 151  PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
             + A+ +F      D+  + AM+ G+  +     +L ++  M+ S   +    ++ A +A
Sbjct: 1059 MEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKA 1118

Query: 211  AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A  L  ++Q + I    V  G + ++ V +G++D Y K G +  ARR+F+E +   + +A
Sbjct: 1119 AGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNE-IPSPDDVA 1177

Query: 271  WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
            W  M++G  + G +   L  +H + +    PDEY+F A L   C+   A E  + I    
Sbjct: 1178 WTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTF-ATLVKACSLLTALEQGRQIHANT 1236

Query: 331  VRYKLEPGLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
            V  KL    + +  T L+    + G +EDA R           A W A++   A HG A+
Sbjct: 1237 V--KLNCAFDPFVMTSLVDMYAKCGNIEDA-RGLFKRTNTSRIASWNAMIVGLAQHGNAE 1293

Query: 389  MA 390
             A
Sbjct: 1294 EA 1295



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 168/373 (45%), Gaps = 44/373 (11%)

Query: 22  HARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHSNSP 78
           HAR L S    DR + NNLIT YSK   LS + +LF+  P  S ++V+W A++SAH++  
Sbjct: 649 HARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKA 708

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
                   +LR   +S    + TLA +FK C  LS +     SLH  ++K+ L    F  
Sbjct: 709 RDGFHLFRLLRRSFVS--ATRHTLAPVFKMCL-LSASPSAAESLHGYAVKIGLQWDVFVA 765

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD-----MR 193
            ALV+ Y++F     A+ +FD +  RDVV +  M+  +       ++L +F++     +R
Sbjct: 766 GALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLR 825

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             DV  T+  ++  +++   +   +             L +    GT L   Y      S
Sbjct: 826 PDDV--TLCTLARVVKSKQNVLEWQ-------------LKQLKAYGTKLF-MYDDDDDGS 869

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           D              IAWN  ++ + Q+G+    ++ F  +     A D  +F+ +L+ +
Sbjct: 870 DV-------------IAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVV 916

Query: 314 CNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             AGL   E  K I  + VR  L+  +    CLI+   + G +  A  +   M  E D  
Sbjct: 917 --AGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMN-EVDLV 973

Query: 373 VWRALLSFSAIHG 385
            W  ++S  A+ G
Sbjct: 974 SWNTMISGCALSG 986



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 157/369 (42%), Gaps = 33/369 (8%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H  A+K   Q D  +   L+  Y+K   +  +  LF+ +   ++V W  ++ A+ ++ L
Sbjct: 749  LHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGL 808

Query: 80   SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL-SLHSLSLKLSLHDKPFCG 138
                 L           P+  TL +L +   S  +   + L  L +   KL ++D    G
Sbjct: 809  EYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDG 868

Query: 139  SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
            S                         DV+ +   +  F Q     +++  F DM +S V 
Sbjct: 869  S-------------------------DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVA 903

Query: 199  STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                     L   A L  +E  + IHG  V SGLD+ V VG  LI+ Y K G VS AR V
Sbjct: 904  CDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTV 963

Query: 259  FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
            F + ++ ++ ++WN M++G A  G +   + +F  L   G  PD+++  +VL A  + G 
Sbjct: 964  FWQ-MNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGG 1022

Query: 319  AGESEKWIE--RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
                   I    MK    L+  +   T LI    ++G++E+AE + +      D A W A
Sbjct: 1023 GCHLATQIHACAMKAGVVLDSFVS--TTLIDVYSKSGKMEEAEFLFVNQD-GFDLASWNA 1079

Query: 377  LLSFSAIHG 385
            ++    + G
Sbjct: 1080 MMHGYIVSG 1088



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 10/219 (4%)

Query: 95  FLPNQRTLASLFKTCASLSHAFL-----FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
           F+P    + S+ +  + L HA        G   H+  L    H   F  + L+  YS+  
Sbjct: 616 FIPPAHLIHSIPQWFSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCG 675

Query: 150 SPDNAKKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
           S  +A+K+FD   +  RD+V + A++   A  +R  D   +F  +R S V +T + ++  
Sbjct: 676 SLSSARKLFDTTPDTSRDLVTWNAILSAHADKAR--DGFHLFRLLRRSFVSATRHTLAPV 733

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
            +     A+      +HG+AV  GL  +V V   L++ Y K G + +AR +FD  + + +
Sbjct: 734 FKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFD-GMGLRD 792

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            + WN MM  Y   G +   L LF      G  PD+ + 
Sbjct: 793 VVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL 831


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 183/478 (38%), Positives = 286/478 (59%), Gaps = 3/478 (0%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           +Q TLA+  K C  L      G  +H+ ++K          S ++  Y +     NA  V
Sbjct: 29  DQITLATAAKACGCLV-LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIV 87

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           F+ I   D V + +MI G   N     +L ++  MR S V    Y  +  ++A++ + A+
Sbjct: 88  FNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTAL 147

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
           EQ R +H + +      +  VGT L+D Y K G + DA R+F + ++V N   WNAM+ G
Sbjct: 148 EQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLF-KKMNVRNIALWNAMLVG 206

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
            AQ G+    + LF  ++  G  PD  SF+ +L+A  +AGL  E+ +++  M   Y +EP
Sbjct: 207 LAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEP 266

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            +EHY+CL+ A+GRAG +++A+++   MPF+  A++ RALL    I G  +   ++  RL
Sbjct: 267 EIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRVAARL 326

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
             + P+D +AYV+++N+ +   RWD+V + RK+MK + V+K+ G SWI+VK  +H+F+  
Sbjct: 327 FALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVD 386

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
           DR H + + IY K+ E+M+     GYVP  + +L +V D EK  +L+YHSEKLA+A+GL+
Sbjct: 387 DRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLI 446

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S  P   T+R++KNLR+C DCH + KYIS+V EREIV+RD NR+H F +G C+CGD W
Sbjct: 447 S-TPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 503



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 138/269 (51%), Gaps = 11/269 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +HA A+K+   +D  + + ++  Y K   +  +  +FN+I +P+ V+WT++IS    + N
Sbjct: 52  IHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGN 111

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L I+  M +      +P++ T A+L K  + ++ A   G  LH+  +KL     PF
Sbjct: 112 EDQALRIYHRMRQS---RVMPDEYTFATLIKASSCVT-ALEQGRQLHANVIKLDCVSDPF 167

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G++LV  Y++  + ++A ++F ++  R++  + AM+VG AQ+    +++++F  M+S  
Sbjct: 168 VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG 227

Query: 197 VGSTMYCVSGALRAAAELA-AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           +        G L A +      E    +H      G++  +   + L+D  G+AG+V +A
Sbjct: 228 IEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEA 287

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQ-QGD 283
            +V  E +    S + N  + G  + QGD
Sbjct: 288 DKVI-ETMPFKASASINRALLGACRIQGD 315



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 5/227 (2%)

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           M+ G+   +    +L +F+ +  S   S    ++ A +A   L  ++Q + IH HA+ +G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
            D ++ V +G++D Y K G + +A  VF+  +S  + +AW +M++G    G++   L ++
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNY-ISAPDDVAWTSMISGCVDNGNEDQALRIY 119

Query: 292 HLLEMRGFAPDEYSFLAVLTA-LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           H +      PDEY+F  ++ A  C   L    +     +K+    +P +   T L+    
Sbjct: 120 HRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYA 177

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           + G +EDA R+   M    + A+W A+L   A HG A+ A  + K +
Sbjct: 178 KCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEAVNLFKSM 223


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 212/590 (35%), Positives = 330/590 (55%), Gaps = 26/590 (4%)

Query: 5   LNQQPQPQN----------TSTDPR--IVHARALKSS-QADRSIYNNLITNYSKSNLLSY 51
            NQQP  +N          + + P+   +HA  +K   Q    + ++LI  YSK++L   
Sbjct: 14  FNQQPLYRNLCNTLLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYS 73

Query: 52  SLRLFNHIPSPNIVSWTALIS--AHSNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKT 108
           SL++F+  P  +  +W+++IS  A ++ PL SLN F  MLR       P+     S  K+
Sbjct: 74  SLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQ---GVPPDDHIFPSATKS 130

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
           C  LS +      LH  +LK + H   F GS+++  Y++      A  VFDE+  R+VV 
Sbjct: 131 CGILS-SLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVS 189

Query: 169 YGAMIVGFAQNSRLVDSLSVFAD--MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
           +  +I G+ Q     +SL +F    +   + G   + +S  LR       ++  R+IHG 
Sbjct: 190 WSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGL 249

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
           +  +  D +  V + LI  Y K G+V +A  VF+E ++V N   WNAM+   AQ      
Sbjct: 250 SFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEE-VTVRNLGMWNAMLIACAQHAHTDK 308

Query: 287 VLELFHLLE-MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             ELF  ++ + G   +  +FL VL A  +AGL  + + + E MK  Y +EPG +HY+ +
Sbjct: 309 TFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFELMK-DYGIEPGTQHYSTM 367

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +  +GRAG+L DA ++   MP EP  +VW ALL+   +HG   +AS +  R+ ++     
Sbjct: 368 VDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSS 427

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             +V+++N  +  GRW+E A+ RK+M+DR ++KE G SW+E   ++H F AGDR H ++ 
Sbjct: 428 GLHVMLSNAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSV 487

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT 525
           +IY KL EL EE ++ GYV     +L  V   EK  ++ YHSE+LA+AFG ++  P G+ 
Sbjct: 488 EIYDKLDELGEEMDKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFIT-FPHGQP 546

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +R++KNLR+C DCH + K+IS+   R I+VRD NR+HRF +G CTCGD W
Sbjct: 547 IRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 196/552 (35%), Positives = 317/552 (57%), Gaps = 28/552 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D+  +N +IT Y+++ LLS + RLF  +P  ++ +WTA++S    +         ML   
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQN--------GMLDEA 296

Query: 92  TLSF--LPNQRTLASLFKTCASLSHAFLFG-LSLHSLSLKLSLHDK-----PFCGSALVH 143
           T  F  +P +  ++          +A + G +    +     L D+         + +V 
Sbjct: 297 TRIFEEMPEKNEVSW---------NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVT 347

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y++  + D AK +FDE+ +RD + + AMI G+AQ+ +  ++L +F  M+          
Sbjct: 348 GYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSA 407

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           ++ AL + AE+AA+E  + +HG  V +G     I G  L+  YGK G + +A  VF E++
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVF-EDI 466

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
           +  + ++WN M+AGYA+ G     L LF  ++M    PD+ + + VL+A  + GL  +  
Sbjct: 467 TEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGM 525

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           ++   M   Y +    +HYTC+I  +GRAGRL++A  +  +MPF PDAA W ALL  S I
Sbjct: 526 EYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRI 585

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           HG  ++  K  +++ ++ P +   YV+++N+ +  GRW EV E+R  M+D+ V+K  G S
Sbjct: 586 HGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYS 645

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
           W+E++ K H+F  GD  H   E IY  L EL  E ++ G+V     +LH+V + EK   L
Sbjct: 646 WVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHML 705

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
            YHSEKLA+AFG++S  P G+ +R++KNLR+C DCH + K+IS++ +R+I+VRD NR+H 
Sbjct: 706 KYHSEKLAVAFGILS-IPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHH 764

Query: 564 FLNGSCTCGDLW 575
           F  GSC+CGD W
Sbjct: 765 FSEGSCSCGDYW 776



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 185/433 (42%), Gaps = 45/433 (10%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR +     DR +  +N +++ Y K+  LS +  LFN +P  ++VSW A++S  + +   
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +  IF  ML    +S+      L S +     +  A     S     +          
Sbjct: 170 EEARKIFDQMLVKNEISW----NGLLSAYVQNGRIEDARRLFDSKMDWEI--------VS 217

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + L+  Y R +  D+A+ +FD +  RD + +  MI G+AQN  L ++  +F ++   DV
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV 277

Query: 198 GSTMYCVSGALR------AAAELAAMEQCRVIHGHAVVSGL-----------------DR 234
            +    VSG ++      A      M +   +  +A+++G                   R
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR 337

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           N      ++ GY + G +  A+ +FDE +   + I+W AM++GYAQ G     L LF  +
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKILFDE-MPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
           +  G   +  S LA   + C    A E  K +    V+   + G      L++  G+ G 
Sbjct: 397 KRDGGILNR-SALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGS 455

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIVAN 413
           +E+A  +   +  E D   W  +++  A HG    A  + + + + I P DD   V V +
Sbjct: 456 IEEAFDVFEDIT-EKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKP-DDVTLVGVLS 513

Query: 414 VLSGVGRWDEVAE 426
             S  G  D+  E
Sbjct: 514 ACSHTGLVDKGME 526



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 19/241 (7%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +A++  Y      D A+KVF+++ +RD++ +  M+ G+ +N  L  + ++F  M   DV 
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV 154

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           S    +SG     A+   +E+ R I    +V    +N I   GL+  Y + G + DARR+
Sbjct: 155 SWNAMLSG----FAQNGFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRL 206

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD  +     ++WN +M GY ++        LF  + +R    D+ S+  ++T     GL
Sbjct: 207 FDSKMD-WEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGL 261

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E+ +  E + +R      +  +T ++S   + G L++A RI   MP E +   W A++
Sbjct: 262 LSEARRLFEELPIR-----DVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMI 315

Query: 379 S 379
           +
Sbjct: 316 A 316



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 148/327 (45%), Gaps = 26/327 (7%)

Query: 19  RIVHARALKSSQADR--SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +I  AR L      R  S +N ++T Y++   +  +  LF+ +P  + +SW A+IS ++ 
Sbjct: 323 QIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQ 382

Query: 77  SPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           S  S   L++F+ M R   +    N+  LA    +CA ++ A   G  LH   +K     
Sbjct: 383 SGQSEEALHLFIKMKRDGGI---LNRSALACALSSCAEIA-ALELGKQLHGRLVKAGFQT 438

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               G+AL+  Y +  S + A  VF++I E+D+V +  MI G+A++    ++L++F  M+
Sbjct: 439 GYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMK 498

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            + +      + G L A +    +++     +      G+  N    T +ID  G+AG +
Sbjct: 499 MT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRL 557

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGD----QSTVLELFHLLEMRGFAPDEYSFLA 308
            +A  +        ++  W A++      GD    +    ++F +       PD      
Sbjct: 558 DEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEM------EPDNSGMYV 611

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKL 335
           +L+ L  A     S +W E  ++R K+
Sbjct: 612 LLSNLYAA-----SGRWREVREMRSKM 633


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 209/564 (37%), Positives = 303/564 (53%), Gaps = 18/564 (3%)

Query: 21  VHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA A+K+ Q +D  +  +    YSK+ L   + ++F+ +P  NI +W A +S   NS L
Sbjct: 130 VHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLS---NSVL 186

Query: 80  ------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                 +L  F+   RH    + PN  T  +    CA  S+  L G  LH   L+     
Sbjct: 187 EGRYDDALTAFIE-FRHE--GWEPNLITFCAFLNACAGASYLRL-GRQLHGFVLQSGFEA 242

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + L+ FY +      ++ +F  I + + V + +MIV + QN     +  VF   R
Sbjct: 243 DVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRAR 302

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              +  T + VS  L A A L+ +E  + +H  AV + +  N+ VG+ L+D YGK G + 
Sbjct: 303 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 362

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG--FAPDEYSFLAVLT 311
           DA R FDE +   N + WNAM+ GYA QG     + LF  +       AP+  +F+ VL+
Sbjct: 363 DAERAFDE-MPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLS 421

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A   AG      +  E M+ RY +EPG EHY C++  +GRAG +E A +    MP  P  
Sbjct: 422 ACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTV 481

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           +VW ALL  S + GK+++       L +++P D   +V+++N+ +  GRW+E   VRK M
Sbjct: 482 SVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEM 541

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           KD  ++K  G SWI     VHVF A D  HER  +I   LA+L  E E  GY+P     L
Sbjct: 542 KDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFAL 601

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            ++ + EK   +WYHSEK+ALAFGL+S  P G  +RI KNLRIC DCH + K+IS +V R
Sbjct: 602 FDLEEEEKAMEVWYHSEKIALAFGLIS-IPAGVPIRITKNLRICGDCHSAIKFISGIVGR 660

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD N +HRF +  C+C D W
Sbjct: 661 EIIVRDNNLFHRFRDNQCSCRDYW 684



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 195/424 (45%), Gaps = 12/424 (2%)

Query: 19  RIVHARALKS--SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH-S 75
           R  HA+ +K+  +     IYN+L+  YSK +  + +  L +  P+ ++V+WTALI+    
Sbjct: 26  RAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQ 85

Query: 76  NSPLSLNIF-LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           N   +  +F  S +R  ++   PN  T    FK   SL    L G  +H+L++K      
Sbjct: 86  NGRFTSALFHFSNMRRDSIQ--PNDFTFPCAFKASGSLRSP-LVGKQVHALAVKAGQISD 142

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F G +    YS+    + A+K+FDE+ ER++  + A +       R  D+L+ F + R 
Sbjct: 143 VFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRH 202

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                 +      L A A  + +   R +HG  + SG + +V V  GLID YGK   V  
Sbjct: 203 EGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGC 262

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           +  +F   +S  N ++W +M+  Y Q  ++     +F      G  P ++   +VL+A  
Sbjct: 263 SEIIFS-GISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSAC- 320

Query: 315 NAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            AGL+  E  K +  + V+  +   +   + L+   G+ G +EDAER    MP E +   
Sbjct: 321 -AGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVT 378

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W A++   A  G+ADMA  +   +   +      YV    VLS   R   V    ++ + 
Sbjct: 379 WNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFES 438

Query: 434 RRVR 437
            R R
Sbjct: 439 MRGR 442



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 118/251 (47%), Gaps = 12/251 (4%)

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP-FCGSALVHFYSRFR 149
           P LS  PN  +LASL ++  S   + L G + H+  +K   +  P F  + LV+ YS+  
Sbjct: 2   PFLS--PN--SLASLVESAVSTQCSRL-GRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLD 56

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
            P++A+ +      R VV + A+I G  QN R   +L  F++MR   +    +    A +
Sbjct: 57  RPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFK 116

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A+  L +    + +H  AV +G   +V VG    D Y KAG+  +AR++FDE +   N  
Sbjct: 117 ASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDE-MPERNIA 175

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            WNA ++    +G     L  F      G+ P+  +F A L A      AG S   + R 
Sbjct: 176 TWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNA-----CAGASYLRLGRQ 230

Query: 330 KVRYKLEPGLE 340
              + L+ G E
Sbjct: 231 LHGFVLQSGFE 241


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 205/579 (35%), Positives = 314/579 (54%), Gaps = 38/579 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D S +N +I  + +   +  ++  F  +   +IV+W ++IS  +       +L+IF  ML
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270

Query: 89  RHPTLSFLPNQRTLASLFKTCASL----------SHAFLFGLSLHSLSLKLSLHDKPFCG 138
           R   LS  P++ TLAS+   CA+L          SH    G  +  + L   +     CG
Sbjct: 271 RDSLLS--PDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCG 328

Query: 139 ----------------------SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
                                 +AL+  Y +    + AK +F  +++RDVV + AMIVG+
Sbjct: 329 GVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGY 388

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
            Q+    +++++F  M         Y ++  L  A+ LA++   + IHG AV SG   +V
Sbjct: 389 EQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSV 448

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            V   LI  Y KAG ++ A R FD      ++++W +M+   AQ G     LELF  + M
Sbjct: 449 SVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLM 508

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            G  PD  +++ V +A  +AGL  +  ++ + MK   K+ P L HY C++   GRAG L+
Sbjct: 509 EGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQ 568

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A+     MP EPD   W +LLS   +H   D+     +RL+ + P +  AY  +AN+ S
Sbjct: 569 EAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYS 628

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
             G+W+E A++RK MKD RV+KE G SWIEVK KVHVF   D  H    +IY  + ++ +
Sbjct: 629 ACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWD 688

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
           E +++GYVP    +LH++ +  K + L +HSEKLA+AFGL+S  P   TLRI+KNLR+C 
Sbjct: 689 EIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIS-TPDKTTLRIMKNLRVCN 747

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH + K+IS++V REI+VRD  R+H F +G C+C D W
Sbjct: 748 DCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 120/528 (22%), Positives = 212/528 (40%), Gaps = 103/528 (19%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSP 62
           L +     N     ++VH R +KS     S+Y  NNL+  YSK+    ++ +LF+ +P  
Sbjct: 20  LQKSVNKSNGRFTAQLVHCRVIKSGLM-FSVYLMNNLMNVYSKTGYALHARKLFDEMPLR 78

Query: 63  NIVSWTALISAHS---NSPLSLNIFLSMLRHPTLSFL----------------------- 96
              SW  ++SA+S   +   +   F  + +  ++S+                        
Sbjct: 79  TAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMV 138

Query: 97  -----PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                P Q TL ++  + A+ +     G  +HS  +KL L       ++L++ Y++   P
Sbjct: 139 KEGIEPTQFTLTNVLASVAA-TRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDP 197

Query: 152 DNAKKVFD-------------------------------EIRERDVVCYGAMIVGFAQNS 180
             AK VFD                               ++ ERD+V + +MI GF Q  
Sbjct: 198 MMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRG 257

Query: 181 RLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
             + +L +F+ M R S +    + ++  L A A L  +   + IH H V +G D + IV 
Sbjct: 258 YDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVL 317

Query: 240 TGLIDGYGKAGIVSDARRVFDE--------------------------------NLSVLN 267
             LI  Y + G V  ARR+ ++                                +L   +
Sbjct: 318 NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRD 377

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            +AW AM+ GY Q G     + LF  +   G  P+ Y+ LA + ++ ++  +    K I 
Sbjct: 378 VVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYT-LAAMLSVASSLASLSHGKQIH 436

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
              V+      +     LI+   +AG +  A R    +  E D   W +++   A HG A
Sbjct: 437 GSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 496

Query: 388 DMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           + A ++ + ++   + P D   YV V +  +  G  ++  +   +MKD
Sbjct: 497 EEALELFETMLMEGLRP-DHITYVGVFSACTHAGLVNQGRQYFDMMKD 543


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 311/541 (57%), Gaps = 8/541 (1%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPLSLNIFLSMLRHPTLSF 95
             L+  Y   N L+ +  LF+ I   N+  W  +I  ++ N P  L I L   +      
Sbjct: 40  TKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISL-YYQMRDYGL 98

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           +P++ T   + K C++LS A   G  +H   ++  L    F G+AL+  Y++    ++A+
Sbjct: 99  VPDKFTFPFVLKACSALS-AMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESAR 157

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           +VFD+I ERDVVC+ +M+  ++QN +  +SL++   M  + +  T      ++ A+A+  
Sbjct: 158 QVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNG 217

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            + Q + +HG++   G + N  V T L+D Y K+G V+ AR +F E L     ++WNAM+
Sbjct: 218 LLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLF-ELLEEKRVVSWNAMI 276

Query: 276 AGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
            GYA  G  +  L+LF   EM+G   PD  +F+ VL A  + GL  E +     M   + 
Sbjct: 277 TGYAMHGHANEALDLFK--EMKGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFN 334

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           + P ++HYTC+I  +G  GRLE+A ++ M M  EPDA VW ALL    IHG  +M     
Sbjct: 335 IWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELAL 394

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           ++L+++ P D   YVI++N+ +  G+WD VA +R +M ++ ++K    SWIEV  KVH F
Sbjct: 395 EKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAF 454

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
           L+ D  H ++E IY +L    +  +  GY P    + H+V D EK + +  HSE+LA+AF
Sbjct: 455 LSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAF 514

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+S +  G  L I+KNLRIC DCH + K+IS++ EREI +RDVNRYH F +G C+CGD 
Sbjct: 515 GLISTSA-GTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKDGVCSCGDF 573

Query: 575 W 575
           W
Sbjct: 574 W 574



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 146/295 (49%), Gaps = 4/295 (1%)

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           ASL ++C  +  A   G  LH+   ++ +   P   + LV+ Y    S  NA  +FD I 
Sbjct: 5   ASLLQSCV-VRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +R++  +  MI G+A N     ++S++  MR   +    +     L+A + L+AME+ + 
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH   + SGL+ +V VG  LID Y K G V  AR+VFD+ +   + + WN+M+A Y+Q G
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDK-IDERDVVCWNSMLATYSQNG 182

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                L L  ++   G  P E +F+  + A  + GL  + ++ +     R+  E   +  
Sbjct: 183 QPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKE-LHGYSWRHGFESNDKVK 241

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           T L+    ++G +  A R    +  E     W A+++  A+HG A+ A  + K +
Sbjct: 242 TALMDMYAKSGSVNVA-RSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM 295


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 327/563 (58%), Gaps = 14/563 (2%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSK---SNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +H+R ++   A D  +  +L+  Y+K      +  S ++F  +P  N++SWTA+I+A++ 
Sbjct: 78  LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQ 137

Query: 77  S----PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           S      ++ +F  M+   +    PN  + +S+ K C +LS  +  G  ++S ++KL + 
Sbjct: 138 SGECDKEAIELFCKMI---SGHIRPNHFSFSSVLKACGNLSDPYT-GEQVYSYAVKLGIA 193

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                G++L+  Y+R    ++A+K FD + E+++V Y A++ G+A+N +  ++  +F ++
Sbjct: 194 SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 253

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             + +G + +  +  L  AA + AM +   IHG  +  G   N  +   LI  Y + G +
Sbjct: 254 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 313

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A +VF+E +   N I+W +M+ G+A+ G  +  LE+FH +   G  P+E +++AVL+A
Sbjct: 314 EAAFQVFNE-MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 372

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  E +K    M   + + P +EHY C++  +GR+G L +A     +MP   DA 
Sbjct: 373 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 432

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VWR LL    +HG  ++     + +++  P D +AY++++N+ +  G+W +V ++RK MK
Sbjct: 433 VWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMK 492

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           +R + KE G SWIEV+ +VH F  G+  H +   IY +L +L  + + +GY+P  D +LH
Sbjct: 493 ERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLH 552

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + +K + L+ HSEK+A+AFGL+S   + K +RI KNLR+C DCH + KYIS    RE
Sbjct: 553 DIEEEQKEQFLFQHSEKIAVAFGLIS-TSQSKPIRIFKNLRVCGDCHTAIKYISMATGRE 611

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H   NG C+C D W
Sbjct: 612 IVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 187/382 (48%), Gaps = 23/382 (6%)

Query: 54  RLFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           ++F+ +P  N+V+WT +I+  +    +  ++++FL M       ++P++ T +S+   C 
Sbjct: 11  KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM---ELSGYVPDRFTYSSVLSACT 67

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR---SPDNAKKVFDEIRERDVV 167
            L      G  LHS  ++L L      G +LV  Y++     S D+++KVF+++ E +V+
Sbjct: 68  ELG-LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 126

Query: 168 CYGAMIVGFAQNSRL-VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
            + A+I  +AQ+     +++ +F  M S  +    +  S  L+A   L+       ++ +
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
           AV  G+     VG  LI  Y ++G + DAR+ FD  L   N +++NA++ GYA+      
Sbjct: 187 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFD-ILFEKNLVSYNAIVDGYAKNLKSEE 245

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC-- 344
              LF+ +   G     ++F ++L+   + G  G+ E+   R+     L+ G +   C  
Sbjct: 246 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCIC 300

Query: 345 --LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
             LIS   R G +E A ++   M  + +   W ++++  A HG A  A +M  ++++   
Sbjct: 301 NALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 359

Query: 403 Y-DDSAYVIVANVLSGVGRWDE 423
             ++  YV V +  S VG   E
Sbjct: 360 KPNEITYVAVLSACSHVGMISE 381



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 139/283 (49%), Gaps = 19/283 (6%)

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A KVFD++ ER++V +  MI  FAQ     D++ +F DM  S      +  S  L A  E
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA---GIVSDARRVFDENLSVLNSIA 270
           L  +   + +H   +  GL  +V VG  L+D Y K    G V D+R+VF E +   N ++
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF-EQMPEHNVMS 127

Query: 271 WNAMMAGYAQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           W A++  YAQ G+     +ELF  +      P+ +SF +VL A  N      S+ +    
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL-----SDPYTGEQ 182

Query: 330 KVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
              Y ++ G+    C    LIS   R+GR+EDA R A  + FE +   + A++   A + 
Sbjct: 183 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDA-RKAFDILFEKNLVSYNAIVDGYAKNL 241

Query: 386 KADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           K++ A    +++    I I+ +  ++ +  A  +  +G+ +++
Sbjct: 242 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 284


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 202/578 (34%), Positives = 308/578 (53%), Gaps = 40/578 (6%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +  +I  Y +++ L  +  L + +  P  V+W A+IS +    L    F +  R  ++  
Sbjct: 220 WTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGI 279

Query: 96  LPNQRTLASLFKTCASLSHA---FLFGLSLHSLSLKL----SLHDKPFCGSALVHFYSRF 148
             ++ T  SL   C S +     F  G  +H   L+     S H      +AL+ FY+++
Sbjct: 280 QEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKY 339

Query: 149 RSPDNAKKVFD-------------------------------EIRERDVVCYGAMIVGFA 177
                A++VFD                               E+ ER+V+ +  MI G A
Sbjct: 340 DRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLA 399

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN    + L +F  M+S  +    Y  +GA+ A + L +++  + IH   +  G D  + 
Sbjct: 400 QNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLS 459

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
            G  LI  Y + G+V  A  VF   +  ++S++WNAM+A  AQ G     +ELF  +   
Sbjct: 460 AGNALITMYSRCGVVESAESVF-LTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKE 518

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
              PD  +FL +LTA  +AGL  E   + + M  RY + PG +HY  LI  + RAG    
Sbjct: 519 DILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLK 578

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           A+ +  +MPFE  A +W ALL+   IHG  ++  +   RL+++ P  D  Y+I++N+ + 
Sbjct: 579 AQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAA 638

Query: 418 VGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEE 477
           +G+WDEVA VR +M++R V+KE G SW+EV+  VHVFL  D  H   + +YT L +L+ E
Sbjct: 639 LGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNE 698

Query: 478 CERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRD 537
            ++LGYVP    +LH++    K  +L  HSEKLA+ +G++   P G T+R+ KNLRIC D
Sbjct: 699 MKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMK-LPLGATIRVFKNLRICGD 757

Query: 538 CHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           CH +FKYIS+VVEREIVVRD  R+H F NG C+CG+ W
Sbjct: 758 CHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 129/518 (24%), Positives = 213/518 (41%), Gaps = 126/518 (24%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           L Q      T    R VHA  L S  + +  I N LI  Y KS+ ++Y+ +LF+ IP P+
Sbjct: 11  LTQLNHVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPD 70

Query: 64  IVSWTALISAHSNS-------------PLS-----------------------LNIFLSM 87
           IV+ T L+SA+S+S             PL+                       LN+F+ M
Sbjct: 71  IVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQM 130

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
            R+    FLP+  T +S+    + ++        LH   +KL     P   +AL+  Y  
Sbjct: 131 KRY---GFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVC 187

Query: 148 FRSPD---------NAKKVFDE------------------IRERDV-------------- 166
             S           +A+KVFDE                  +R  D+              
Sbjct: 188 CASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPI 247

Query: 167 -VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA---ELAAMEQC-R 221
            V + AMI G+ +     ++   F  M S  +    Y  +  + A     E   M  C R
Sbjct: 248 DVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGR 307

Query: 222 VIHGHAVVSGLDRN----VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
            +HG+ + + ++ +    + V   LI  Y K   + +ARRVFD+ + V + I+WNA+++G
Sbjct: 308 QVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDK-MPVRDIISWNAVLSG 366

Query: 278 Y-------------------------------AQQGDQSTVLELFHLLEMRGFAPDEYSF 306
           Y                               AQ G     L+LF+ ++  G  P +Y+F
Sbjct: 367 YVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAF 426

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
              +TA C+   + ++ + I    +R   + GL     LI+   R G +E AE + + MP
Sbjct: 427 AGAITA-CSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMP 485

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINP 402
           +  D+  W A+++  A HG    A ++ ++++  DI P
Sbjct: 486 Y-VDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILP 522


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 315/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           + VHA+ + +   D   +   LI  Y     +  + R+F+ +   ++VSWT +I  +   
Sbjct: 283 KAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAEN 342

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           SN   +  +F +M         P++ T   +   CAS S        +HS  ++      
Sbjct: 343 SNIEDAFGLFATMQEE---GIQPDRITYIHIINACAS-SADLSLAREIHSQVVRAGFGTD 398

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +ALVH Y++  +  +A++VFD +  RDVV + AMI  + +N    ++   F  M+ 
Sbjct: 399 LLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKR 458

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           ++V   +      L A   L A++    I+  A+ + L  ++ VG  LI+   K G +  
Sbjct: 459 NNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIER 518

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR +F EN+   + + WN M+ GY+  G+    L+LF  +    F P+  +F+ VL+A  
Sbjct: 519 ARYIF-ENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACS 577

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            AG   E  ++   +     + P +E Y C++  +GRAG L++AE +   MP +P++++W
Sbjct: 578 RAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIW 637

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
             LL+   I+G  D+A +  +R +   PYD + YV ++++ +  G W+ VA+VRKVM+ R
Sbjct: 638 STLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESR 697

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            VRKE G +WIEV+GK+H F+  DR H +  +IY +LA LM   +R GY+PV   +LHNV
Sbjct: 698 GVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNV 757

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
           G++EK EA+ YHSEKLA+A+G++S  P G  +RI KNLR+C DCH + K+IS+V  REI+
Sbjct: 758 GEQEKEEAISYHSEKLAIAYGVLS-LPSGAPIRIFKNLRVCGDCHSASKFISKVTGREII 816

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
            RD +R+H F NG C+CGD W
Sbjct: 817 ARDASRFHHFKNGVCSCGDYW 837



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 189/409 (46%), Gaps = 7/409 (1%)

Query: 22  HARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           HA+ +K    +D  I   L++ Y K   +  + ++F+ +   ++ ++  +I  ++ S   
Sbjct: 185 HAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDG 244

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
              F    R     F PN+ +  S+   C S   A  +G ++H+  +   L D     +A
Sbjct: 245 EKAFQLFYRMQQEGFKPNRISFLSILDGC-STPEALAWGKAVHAQCMNTGLVDDVRVATA 303

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           L+  Y    S + A++VFD+++ RDVV +  MI G+A+NS + D+  +FA M+   +   
Sbjct: 304 LIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPD 363

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
                  + A A  A +   R IH   V +G   +++V T L+  Y K G + DAR+VFD
Sbjct: 364 RITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFD 423

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
             +S  + ++W+AM+  Y + G      E FHL++     PD  +++ +L A  + G A 
Sbjct: 424 A-MSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLG-AL 481

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           +    I    ++  L   +     LI+   + G +E A  I   M  + D   W  ++  
Sbjct: 482 DLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGG 540

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
            ++HG A  A  +  R++      +S  V    VLS   R   V E R+
Sbjct: 541 YSLHGNAREALDLFDRMLKERFRPNS--VTFVGVLSACSRAGFVEEGRR 587



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 150/343 (43%), Gaps = 4/343 (1%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N LI  +S    +  + + F+ + +  +V+W A+I+ ++        F    +    +  
Sbjct: 100 NTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAME 159

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+  T   +   C+S +     G   H+  +K+        G+ALV  Y +  S D A++
Sbjct: 160 PSIITFLIVLDACSSPA-GLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQ 218

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VFD + +RDV  +  MI G+A++     +  +F  M+              L   +   A
Sbjct: 219 VFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEA 278

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +   + +H   + +GL  +V V T LI  Y   G +  ARRVFD+ + V + ++W  M+ 
Sbjct: 279 LAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDK-MKVRDVVSWTVMIR 337

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GYA+  +      LF  ++  G  PD  +++ ++ A C +       + I    VR    
Sbjct: 338 GYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINA-CASSADLSLAREIHSQVVRAGFG 396

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             L   T L+    + G ++DA ++  AM    D   W A++ 
Sbjct: 397 TDLLVDTALVHMYAKCGAIKDARQVFDAMS-RRDVVSWSAMIG 438



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQ 280
           +  H + SG   N+     LI  +   G + +AR+ FD  EN +V   + WNA++AGYAQ
Sbjct: 83  VRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTV---VTWNAIIAGYAQ 139

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN-AGLAGESEKWIERMKVRYKLEPGL 339
            G       LF  +      P   +FL VL A  + AGL    E   + +KV +  +   
Sbjct: 140 LGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSD--F 197

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
              T L+S   + G ++ A ++   + ++ D + +  ++   A  G  + A ++  R+
Sbjct: 198 RIGTALVSMYVKGGSMDGARQVFDGL-YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRM 254


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 315/561 (56%), Gaps = 16/561 (2%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISAH---S 75
           +H + +K+ S  D +I   L+  YSK + +  + +LF  +    N+VSWTA+IS +    
Sbjct: 316 LHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNG 375

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +  ++N+F  M R       PN  T +++    A++S +      +H+L +K +  + P
Sbjct: 376 RTDRAMNLFCQMRRE---GVRPNHFTYSTILTANAAVSPS-----QIHALVVKTNYENSP 427

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             G+AL   YS+    + A K+F+ I E+D+V + AM+ G+AQ   +  ++ +F  +   
Sbjct: 428 SVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKE 487

Query: 196 DVGSTMYCVSGALRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            V    +  S  L A AA  A++EQ +  H  ++ SG    + V + L+  Y K G +  
Sbjct: 488 GVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIES 547

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  VF   +   + ++WN+M++GYAQ G     L++F  +  +    D  +F+ V++A  
Sbjct: 548 ANEVFKRQVD-RDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACT 606

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E +++ + M   Y + P +EHY+C++    RAG LE A  +   MPF   A +W
Sbjct: 607 HAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIW 666

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           R LL+   +H    +     ++LI + P D +AYV+++N+ +  G W E A+VRK+M  +
Sbjct: 667 RTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMK 726

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           +V+KE G SWIEVK K   F+AGD  H +++ IY KL EL    +  GY P    +LH+V
Sbjct: 727 KVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDV 786

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            +  K   L  HSE+LA+AFGL++  P G  ++IVKNLR+C DCH   K IS++  R+IV
Sbjct: 787 EEEHKEVILSQHSERLAIAFGLIA-TPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIV 845

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+H F  GSC+CGD W
Sbjct: 846 VRDSNRFHHFKGGSCSCGDYW 866



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 178/377 (47%), Gaps = 14/377 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH + +K     D S+  +L+  Y K+  +    R+F+ +   N+VSWT+L++ +  + L
Sbjct: 114 VHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGL 173

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F  M         PN  T A++    A+   A   G+ +H++ +K  L    F
Sbjct: 174 NEQALKLFSQMQLE---GIKPNPFTFAAVLGGLAA-DGAVEKGVQVHTMVIKSGLDSTIF 229

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+++V+ YS+     +AK VFD +  R+ V + +MI GF  N   +++  +F  MR   
Sbjct: 230 VGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG 289

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V  T    +  ++  A +  M   + +H   + +G D ++ + T L+  Y K   + DA 
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           ++F     V N ++W A+++GY Q G     + LF  +   G  P+ +++  +LTA  NA
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA--NA 407

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            +   S   I  + V+   E      T L  +  + G   +A +I   +  E D   W A
Sbjct: 408 AV---SPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKI-FELIDEKDIVAWSA 463

Query: 377 LLSFSAIHGKADMASKM 393
           +LS  A  G  + A K+
Sbjct: 464 MLSGYAQMGDIEGAVKI 480



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 166/345 (48%), Gaps = 13/345 (3%)

Query: 51  YSLRLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRH--PTLSFLPNQRTLASL 105
           +S +LF+  P   +     L+   S +  +  +LN+FL + R   PT     +  +L+ +
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPT-----DGSSLSCV 98

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K C  L    + G  +H   +K    +    G++LV  Y +  S ++ ++VFDE+R ++
Sbjct: 99  LKVCGCLFDR-IVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN 157

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           VV + +++ G+ QN     +L +F+ M+   +    +  +  L   A   A+E+   +H 
Sbjct: 158 VVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT 217

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
             + SGLD  + VG  +++ Y K+ +VSDA+ VFD ++   N+++WN+M+AG+   G   
Sbjct: 218 MVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFD-SMENRNAVSWNSMIAGFVTNGLDL 276

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
              ELF+ + + G    +  F A +  LC         K +    ++   +  L   T L
Sbjct: 277 EAFELFYRMRLEGVKLTQTIF-ATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTAL 335

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           + A  +   ++DA ++   M    +   W A++S    +G+ D A
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRA 380


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 327/563 (58%), Gaps = 14/563 (2%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSK---SNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +H+R ++   A D  +  +L+  Y+K      +  S ++F  +P  N++SWTA+I+A++ 
Sbjct: 73  LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQ 132

Query: 77  S----PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           S      ++ +F  M+   +    PN  + +S+ K C +LS  +  G  ++S ++KL + 
Sbjct: 133 SGECDKEAIELFCKMI---SGHIRPNHFSFSSVLKACGNLSDPYT-GEQVYSYAVKLGIA 188

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                G++L+  Y+R    ++A+K FD + E+++V Y A++ G+A+N +  ++  +F ++
Sbjct: 189 SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 248

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             + +G + +  +  L  AA + AM +   IHG  +  G   N  +   LI  Y + G +
Sbjct: 249 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 308

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A +VF+E +   N I+W +M+ G+A+ G  +  LE+FH +   G  P+E +++AVL+A
Sbjct: 309 EAAFQVFNE-MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 367

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  E +K    M   + + P +EHY C++  +GR+G L +A     +MP   DA 
Sbjct: 368 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 427

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VWR LL    +HG  ++     + +++  P D +AY++++N+ +  G+W +V ++RK MK
Sbjct: 428 VWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMK 487

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           +R + KE G SWIEV+ +VH F  G+  H +   IY +L +L  + + +GY+P  D +LH
Sbjct: 488 ERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLH 547

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + +K + L+ HSEK+A+AFGL+S   + K +RI KNLR+C DCH + KYIS    RE
Sbjct: 548 DIEEEQKEQFLFQHSEKIAVAFGLIS-TSQSKPIRIFKNLRVCGDCHTAIKYISMATGRE 606

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H   NG C+C D W
Sbjct: 607 IVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 187/382 (48%), Gaps = 23/382 (6%)

Query: 54  RLFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           ++F+ +P  N+V+WT +I+  +    +  ++++FL M       ++P++ T +S+   C 
Sbjct: 6   KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM---ELSGYVPDRFTYSSVLSACT 62

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR---SPDNAKKVFDEIRERDVV 167
            L      G  LHS  ++L L      G +LV  Y++     S D+++KVF+++ E +V+
Sbjct: 63  ELG-LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 121

Query: 168 CYGAMIVGFAQNSRL-VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
            + A+I  +AQ+     +++ +F  M S  +    +  S  L+A   L+       ++ +
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
           AV  G+     VG  LI  Y ++G + DAR+ FD  L   N +++NA++ GYA+      
Sbjct: 182 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFD-ILFEKNLVSYNAIVDGYAKNLKSEE 240

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC-- 344
              LF+ +   G     ++F ++L+   + G  G+ E+   R+     L+ G +   C  
Sbjct: 241 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCIC 295

Query: 345 --LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
             LIS   R G +E A ++   M  + +   W ++++  A HG A  A +M  ++++   
Sbjct: 296 NALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 354

Query: 403 Y-DDSAYVIVANVLSGVGRWDE 423
             ++  YV V +  S VG   E
Sbjct: 355 KPNEITYVAVLSACSHVGMISE 376



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 139/283 (49%), Gaps = 19/283 (6%)

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A KVFD++ ER++V +  MI  FAQ     D++ +F DM  S      +  S  L A  E
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA---GIVSDARRVFDENLSVLNSIA 270
           L  +   + +H   +  GL  +V VG  L+D Y K    G V D+R+VF E +   N ++
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF-EQMPEHNVMS 122

Query: 271 WNAMMAGYAQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           W A++  YAQ G+     +ELF  +      P+ +SF +VL A  N      S+ +    
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL-----SDPYTGEQ 177

Query: 330 KVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
              Y ++ G+    C    LIS   R+GR+EDA R A  + FE +   + A++   A + 
Sbjct: 178 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDA-RKAFDILFEKNLVSYNAIVDGYAKNL 236

Query: 386 KADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           K++ A    +++    I I+ +  ++ +  A  +  +G+ +++
Sbjct: 237 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQI 279


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 186/541 (34%), Positives = 307/541 (56%), Gaps = 4/541 (0%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           +YN+L+       ++  +L+LF  +   + VSW A+I   + + L+              
Sbjct: 207 MYNSLMGGLLACGMIEDALQLFRGMEKDS-VSWAAMIKGLAQNGLAKEAIECFREMKVQG 265

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
              +Q    S+   C  L  A   G  +H+  ++ +  D  + GSAL+  Y + +    A
Sbjct: 266 LKMDQYPFGSVLPACGGLG-AINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYA 324

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           K VFD +++++VV + AM+VG+ Q  R  +++ +F DM+ S +    Y +  A+ A A +
Sbjct: 325 KTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANV 384

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           +++E+    HG A+ SGL   V V   L+  YGK G + D+ R+F+E ++V ++++W AM
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE-MNVRDAVSWTAM 443

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           ++ YAQ G     ++LF  +   G  PD  +   V++A   AGL  + +++ + M   Y 
Sbjct: 444 VSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYG 503

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           + P + HY+C+I    R+GRLE+A R    MPF PDA  W  LLS     G  ++     
Sbjct: 504 IVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAA 563

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           + LI+++P+  + Y +++++ +  G+WD VA++R+ M+++ V+KE G+SWI+ KGK+H F
Sbjct: 564 ESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSF 623

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
            A D      + IY KL EL  +    GY P    + H+V +  K + L YHSE+LA+AF
Sbjct: 624 SADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAF 683

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+   P G+ +R+ KNLR+C DCH + K+IS V  REI+VRD  R+HRF +G+C+CGD 
Sbjct: 684 GLIF-VPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDF 742

Query: 575 W 575
           W
Sbjct: 743 W 743



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 204/473 (43%), Gaps = 62/473 (13%)

Query: 9   PQPQNTSTDPRIVHARAL-KSSQADRSIY-----------NNLITNYSKSNLLSYSLRLF 56
           P P+ T     IVHA AL KSS   R ++           NNL+  YSK+ L+S     F
Sbjct: 37  PYPE-TFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTF 95

Query: 57  NHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
             +P  + V+W  LI  +S S L   ++  + +M+R  + +    + TL ++ K  +S  
Sbjct: 96  EKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANL--TRVTLMTMLKLSSSNG 153

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCY---- 169
           H  L G  +H   +KL        GS L++ Y+      +AKKVF  + +R+ V Y    
Sbjct: 154 HVSL-GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLM 212

Query: 170 --------------------------GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
                                      AMI G AQN    +++  F +M+   +    Y 
Sbjct: 213 GGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYP 272

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
               L A   L A+ + + IH   + +    ++ VG+ LID Y K   +  A+ VFD  +
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDR-M 331

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              N ++W AM+ GY Q G     +++F  ++  G  PD Y+    ++A  N     E  
Sbjct: 332 KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGS 391

Query: 324 KWIERMKVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           ++  +      +  GL HY      L++  G+ G ++D+ R+   M    DA  W A++S
Sbjct: 392 QFHGK-----AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVS 445

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
             A  G+A    ++  +++      D   V +  V+S   R   V + ++  K
Sbjct: 446 AYAQFGRAVETIQLFDKMVQHGLKPDG--VTLTGVISACSRAGLVEKGQRYFK 496



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 122/273 (44%), Gaps = 41/273 (15%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H   ++   + + F  + +VH Y+  +S   A++VFD I + ++  +  +++ +++   
Sbjct: 28  IHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGL 87

Query: 182 LVDSLSVFADMRSSDVGSTM------YCVSGALRAAAE-----------------LAAME 218
           + +  S F  +   D G T       Y +SG + AA +                 L  M 
Sbjct: 88  ISEMESTFEKLPDRD-GVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTML 146

Query: 219 QC----------RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +           + IHG  +  G +  ++VG+ L+  Y   G +SDA++VF   L   N+
Sbjct: 147 KLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVF-YGLDDRNT 205

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           + +N++M G    G     L+LF     RG   D  S+ A++  L   GLA E+ +    
Sbjct: 206 VMYNSLMGGLLACGMIEDALQLF-----RGMEKDSVSWAAMIKGLAQNGLAKEAIECFRE 260

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           MKV+  L+     +  ++ A G  G + + ++I
Sbjct: 261 MKVQ-GLKMDQYPFGSVLPACGGLGAINEGKQI 292


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 198/541 (36%), Positives = 306/541 (56%), Gaps = 4/541 (0%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           + NNLI  YSKS L   S R F   P  +  +W+++IS  + + L       + +    S
Sbjct: 52  VANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGS 111

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
             P+   L S  K+C  LS   + G S+H LS+K       F GS+LV  Y++      A
Sbjct: 112 LRPDDHVLPSATKSCGILSRCDI-GKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYA 170

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           +K+FDE+  R+VV +  M+ G+AQ     ++L +F +    ++    Y  S  +   A  
Sbjct: 171 RKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANS 230

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
             +E  R I G  + S  D +  VG+ L+  Y K G +  A +VFDE + + N   WNAM
Sbjct: 231 TLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDE-VPMRNLGIWNAM 289

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           +   AQ      V+ELF  +++ G  P+  +FL VL A  +AGL  E + + + MK   +
Sbjct: 290 LKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFDLMK-ESR 348

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           +EP  +HY  L+  +GRAG+LE+A  I   MP +P  +VW ALL+   IH   ++A+   
Sbjct: 349 IEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAA 408

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
            ++ ++ P     ++ ++N  +  GR+++ A+ RK+++DR  +KE G SW+E + KVH F
Sbjct: 409 DKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTF 468

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
            AG+R HER+++IY KLAEL EE E+ GYV     +L  V   EK + + YHSE+LA+AF
Sbjct: 469 AAGERRHERSKEIYEKLAELGEEMEKAGYVADTSYVLREVDGDEKNQTIRYHSERLAIAF 528

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL++  P  + +R++KNLR+C DCH + K++S    R I+VRD NR+HRF +G C+C D 
Sbjct: 529 GLIT-FPADRPIRVMKNLRVCGDCHNAIKFMSICTRRVIIVRDNNRFHRFEDGKCSCNDY 587

Query: 575 W 575
           W
Sbjct: 588 W 588



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 166/346 (47%), Gaps = 9/346 (2%)

Query: 95  FLP--NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           F+P  N   +  L  + A  S + + GL LH   +K  L   P   + L++FYS+ + P 
Sbjct: 9   FVPCHNYNQICDLLLSSAR-SRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPF 67

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           ++++ F++  ++    + ++I  FAQN     SL     M +  +    + +  A ++  
Sbjct: 68  DSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCG 127

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
            L+  +  + +H  ++ +G D +V VG+ L+D Y K G +  AR++FDE + + N + W+
Sbjct: 128 ILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDE-MPLRNVVTWS 186

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
            MM GYAQ G+    L LF        A ++YSF  V++   N+ L  E  + I+ + ++
Sbjct: 187 GMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLL-ELGRQIQGLCIK 245

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
              +      + L+S   + G LE A ++   +P   +  +W A+L   A H       +
Sbjct: 246 SSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMR-NLGIWNAMLKACAQHSHTQKVIE 304

Query: 393 MGKR--LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           + KR  L  + P +   ++ V N  S  G  DE      +MK+ R+
Sbjct: 305 LFKRMKLSGMKP-NFITFLNVLNACSHAGLVDEGKYYFDLMKESRI 349



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 113/242 (46%), Gaps = 8/242 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
           VH  ++K+   AD  + ++L+  Y+K   + Y+ ++F+ +P  N+V+W+ ++  ++    
Sbjct: 138 VHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGE 197

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +  +L +F   L     +   N  + +++   CA+ S     G  +  L +K S     F
Sbjct: 198 NEEALWLFKEALFE---NLAVNDYSFSTVISVCAN-STLLELGRQIQGLCIKSSFDSSSF 253

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GS+LV  YS+    + A +VFDE+  R++  + AM+   AQ+S     + +F  M+ S 
Sbjct: 254 VGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSG 313

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +          L A +    +++ +        S ++        L+D  G+AG + +A 
Sbjct: 314 MKPNFITFLNVLNACSHAGLVDEGKYYFDLMKESRIEPTDKHYASLVDMLGRAGKLEEAL 373

Query: 257 RV 258
            +
Sbjct: 374 EI 375


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 195/552 (35%), Positives = 316/552 (57%), Gaps = 28/552 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D+  +N +IT Y+++ LLS + RLF  +P  ++ +WTA++S    +         ML   
Sbjct: 245 DKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQN--------GMLDEA 296

Query: 92  TLSF--LPNQRTLASLFKTCASLSHAFLFG-LSLHSLSLKLSLHDK-----PFCGSALVH 143
           T  F  +P +  ++          +A + G +    +     L D+         + +V 
Sbjct: 297 TRIFEEMPEKNEVSW---------NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVT 347

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y++  + D AK +FDE+ +RD + + AMI G+AQ+ +  ++L +F  M+          
Sbjct: 348 GYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSA 407

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           ++ AL + AE+AA+E  + +HG  V +G     I G  L+  YGK G + +A  VF E++
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVF-EDI 466

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
           +  + ++WN M+AGYA+ G     L LF  ++M    PD+ + + VL+A  + G   +  
Sbjct: 467 TEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGM 525

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           ++   M   Y +    +HYTC+I  +GRAGRL++A  +  +MPF PDAA W ALL  S I
Sbjct: 526 EYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRI 585

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           HG  ++  K  +++ ++ P +   YV+++N+ +  GRW EV E+R  M+D+ V+K  G S
Sbjct: 586 HGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYS 645

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
           W+E++ K H+F  GD  H   E IY  L EL  E ++ G+V     +LH+V + EK   L
Sbjct: 646 WVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHML 705

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
            YHSEKLA+AFG++S  P G+ +R++KNLR+C DCH + K+IS++ +R+I+VRD NR+H 
Sbjct: 706 KYHSEKLAVAFGILS-IPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHH 764

Query: 564 FLNGSCTCGDLW 575
           F  GSC+CGD W
Sbjct: 765 FSEGSCSCGDYW 776



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 185/433 (42%), Gaps = 45/433 (10%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR +     DR +  +N +++ Y K+  LS +  LFN +P  ++VSW A++S  + +   
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +  IF  ML    +S+      L S +     +  A     S     +          
Sbjct: 170 EEARKIFDQMLVKNEISW----NGLLSAYVQNGRIEDARRLFDSKMDWEI--------VS 217

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + L+  Y R +  D+A+ +FD +  RD + +  MI G+AQN  L ++  +F ++   DV
Sbjct: 218 WNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV 277

Query: 198 GSTMYCVSGALR------AAAELAAMEQCRVIHGHAVVSGL-----------------DR 234
            +    VSG ++      A      M +   +  +A+++G                   R
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR 337

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           N      ++ GY + G +  A+ +FDE +   + I+W AM++GYAQ G     L LF  +
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKILFDE-MPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
           +  G   +  S LA   + C    A E  K +    V+   + G      L++  G+ G 
Sbjct: 397 KRDGGILNR-SALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGS 455

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIVAN 413
           +E+A  +   +  E D   W  +++  A HG    A  + + + + I P DD   V V +
Sbjct: 456 IEEAFDVFEDIT-EKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKP-DDVTLVGVLS 513

Query: 414 VLSGVGRWDEVAE 426
             S  G  D+  E
Sbjct: 514 ACSHTGFVDKGME 526



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 19/241 (7%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +A++  Y      D A+KVF+++ +RD++ +  M+ G+ +N  L  + ++F  M   DV 
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV 154

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           S    +SG     A+   +E+ R I    +V    +N I   GL+  Y + G + DARR+
Sbjct: 155 SWNAMLSG----FAQNGFVEEARKIFDQMLV----KNEISWNGLLSAYVQNGRIEDARRL 206

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD  +     ++WN +M GY ++        LF  + +R    D+ S+  ++T     GL
Sbjct: 207 FDSKMD-WEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGL 261

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E+ +  E + +R      +  +T ++S   + G L++A RI   MP E +   W A++
Sbjct: 262 LSEARRLFEELPIR-----DVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMI 315

Query: 379 S 379
           +
Sbjct: 316 A 316



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 148/327 (45%), Gaps = 26/327 (7%)

Query: 19  RIVHARALKSSQADR--SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +I  AR L      R  S +N ++T Y++   +  +  LF+ +P  + +SW A+IS ++ 
Sbjct: 323 QIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQ 382

Query: 77  SPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           S  S   L++F+ M R   +    N+  LA    +CA ++ A   G  LH   +K     
Sbjct: 383 SGQSEEALHLFIKMKRDGGI---LNRSALACALSSCAEIA-ALELGKQLHGRLVKAGFQT 438

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               G+AL+  Y +  S + A  VF++I E+D+V +  MI G+A++    ++L++F  M+
Sbjct: 439 GYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMK 498

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            + +      + G L A +    +++     +      G+  N    T +ID  G+AG +
Sbjct: 499 MT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRL 557

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGD----QSTVLELFHLLEMRGFAPDEYSFLA 308
            +A  +        ++  W A++      GD    +    ++F +       PD      
Sbjct: 558 DEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEM------EPDNSGMYV 611

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKL 335
           +L+ L  A     S +W E  ++R K+
Sbjct: 612 LLSNLYAA-----SGRWREVREMRSKM 633


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 201/561 (35%), Positives = 316/561 (56%), Gaps = 10/561 (1%)

Query: 20  IVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           +V A+ L      R +  +N +I  Y+K   L  + +LF+ +P  +  SW A IS    H
Sbjct: 138 LVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTH 197

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           +    +L +F  M RH   S   N+ TL+S     A++      G  +H   ++  L+  
Sbjct: 198 NQPREALELFRVMQRHERSS--SNKFTLSSALAASAAIP-CLRLGKEIHGYLIRTELNLD 254

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               SAL+  Y +  S D A+ +FD++++RDVV +  MI    ++ R  +   +F D+  
Sbjct: 255 EVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQ 314

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           S V    Y  +G L A A+ AA    + +HG+ + +G D      + L+  Y K G    
Sbjct: 315 SGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRV 374

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           ARRVF+E +   + ++W +++ GYAQ G     L  F LL   G  PD+ +++ VL+A  
Sbjct: 375 ARRVFNE-MHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACT 433

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  +  ++   +K ++ L    +HY C+I  + R+GR ++AE I   MP +PD  +W
Sbjct: 434 HAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLW 493

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            +LL    IHG  ++A +  K L +I P + + Y+ +AN+ +  G W EVA VRK M + 
Sbjct: 494 ASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNM 553

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            + K+ G+SWIE+K +VHVFL GD  H +T DI+  L EL ++ +  GYVP  + +LH+V
Sbjct: 554 GIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDV 613

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + +K + L YHSEKLA+ FG++S  P G  +++ KNLR C DCH + KYIS++V+R+I 
Sbjct: 614 EEEQKEQNLVYHSEKLAVVFGIISTPP-GTPIKVFKNLRTCVDCHTAIKYISKIVQRKIT 672

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+H F +GSC+C D W
Sbjct: 673 VRDSNRFHCFEDGSCSCKDYW 693



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 156/371 (42%), Gaps = 37/371 (9%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+ R  ++L   C     A   G  +H+ +   +     F  + L+  Y++  S  +A+ 
Sbjct: 85  PSARVYSTLIAACVR-HRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQM 143

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +FDE+  RD+  +  MIVG+A+  RL  +  +F +M   D  S    +SG +       A
Sbjct: 144 LFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREA 203

Query: 217 MEQCRV--------------------------------IHGHAVVSGLDRNVIVGTGLID 244
           +E  RV                                IHG+ + + L+ + +V + L+D
Sbjct: 204 LELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLD 263

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            YGK G + +AR +FD+ +   + ++W  M+    + G +     LF  L   G  P+EY
Sbjct: 264 LYGKCGSLDEARGIFDQ-MKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEY 322

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F  VL A C    A    K +    +    +PG    + L+    + G    A R+   
Sbjct: 323 TFAGVLNA-CADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNE 381

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDE 423
           M  +PD   W +L+   A +G+ D A    + L+      D   YV V +  +  G  D+
Sbjct: 382 M-HQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDK 440

Query: 424 VAEVRKVMKDR 434
             E    +K++
Sbjct: 441 GLEYFHSIKEK 451


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 321/572 (56%), Gaps = 18/572 (3%)

Query: 18  PRIVHARALKSSQA---------DRSIYNNLITNYSKSNLLSYSLR----LFNHIPSPNI 64
           P+    R LK  QA         D S+    I N+   N  + S++    LF+ IP P+I
Sbjct: 28  PKCTSLRELKQLQAFAIKTHLHSDLSVLTKFI-NFCSLNPTTTSMQHAHHLFDQIPQPDI 86

Query: 65  VSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
           V +  +   ++ +   L  F    +       P+  T  SL K CAS   A   G  LH 
Sbjct: 87  VLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCK-ALEEGRQLHC 145

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
           L++KL L +  +    L++ Y+     D A++VFD+I E  VV Y AMI G+A+ SR  +
Sbjct: 146 LAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNE 205

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +LS+F ++++ ++  T   +   L + A L A++  + +H +   +G +R V V T LID
Sbjct: 206 ALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALID 265

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G + DA  VF EN++V ++ AW+AM+  YA  G     + LF  +   G  PDE 
Sbjct: 266 MYAKCGSLDDAVCVF-ENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEI 324

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +FL +L A  + GL  E  ++   M+ +Y + PG++HY C++  +GRAGRLE+A    + 
Sbjct: 325 TFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVG 384

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           +P  P   +WR LLS    HG  ++  ++ +++ +++      Y+I++N+ +  GRW++V
Sbjct: 385 LPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDV 444

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
             VRK+M +R V K  G S +EV   VH F +GD +H  +  ++  L EL++E + +GYV
Sbjct: 445 NYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYV 504

Query: 485 PVWDEMLH-NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           P    + H ++ D EK   L YHSEKLA+ FGL++  P G T+R+VKNLR+C DCH + K
Sbjct: 505 PNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLN-TPPGTTIRVVKNLRVCGDCHSAAK 563

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            IS + +R+I++RDV R+H F +G C+C D W
Sbjct: 564 LISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 195/561 (34%), Positives = 324/561 (57%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSSQADRSI-YNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +++H+ ++K++  DR + +NN L+  YSK   L+ ++R+F  +    +VSWT++I+ +  
Sbjct: 372 KVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVR 431

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             LS           +   +P+   + S+   CA ++     G  +H    + +L    F
Sbjct: 432 EGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACA-INGNLKSGKIVHDYIRENNLETNSF 490

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR--S 194
             +AL   Y++  S  +A  VF  ++++DV+ +  MI G+ +NS   ++L++FA+M+  S
Sbjct: 491 VSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES 550

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
              G+T+ C+   L A A LAA+++ R IHG+A+ +G   +  V   ++D Y K G++  
Sbjct: 551 KPDGTTVACI---LPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVL 607

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR +FD  +   + ++W  M+AGY   G  S  +  F+ + M G  PDE SF+++L A  
Sbjct: 608 ARSLFDM-IPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACS 666

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++GL  E  K    MK   ++EP LEHY C++  + R G L  A +   AMP +PDA +W
Sbjct: 667 HSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIW 726

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    IH    +A K+ +R+ ++ P +   YV++AN+ +   +W+EV ++RK +  R
Sbjct: 727 GALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQR 786

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++K  G SWIE+KGK+++F+AGD    + + I   L  L  + +  GY P     L N 
Sbjct: 787 GLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNA 846

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            +REK  AL  HSEKLA+AFG+++  P GKT+R+ KNLR+C DCHE  K++S+   REI+
Sbjct: 847 DEREKEVALCGHSEKLAMAFGMLN-LPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREII 905

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD +R+H F +GSC+C   W
Sbjct: 906 LRDSSRFHHFKDGSCSCRGYW 926



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 156/344 (45%), Gaps = 11/344 (3%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHPTLSF 95
           L+  Y K   L     +F+ +    I  W  +IS +S   N   S+N+F  ML    L  
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE---LGI 247

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            PN  T +S+ K  A+++     G  +H L  KL  +      ++L+ FY   R    A+
Sbjct: 248 KPNSYTFSSILKCFAAVARVEE-GRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQ 306

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           K+FDE+ +RDV+ + +MI G+ +N      + +F  M    V   +  +     A A + 
Sbjct: 307 KLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIG 366

Query: 216 AMEQCRVIHGHAV-VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            +   +V+H +++  + LDR V     L+D Y K G ++ A RVF E +     ++W +M
Sbjct: 367 TLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVF-ERMDEKTVVSWTSM 425

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + GY ++G     ++LF  ++ RG  PD Y+  ++L A C      +S K +        
Sbjct: 426 ITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNA-CAINGNLKSGKIVHDYIRENN 484

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           LE        L     + G ++DA  +   M  + D   W  ++
Sbjct: 485 LETNSFVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMI 527



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 187/405 (46%), Gaps = 15/405 (3%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
           ++ N+LI+ Y     +  + +LF+ +   +++SW ++IS +  + L    + IF+ ML  
Sbjct: 287 TVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKML-- 344

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF-CGSALVHFYSRFR 149
                  +  T+ ++F  CA++    L G  LHS S+K +  D+     + L+  YS+  
Sbjct: 345 -VFGVDIDLATMVNVFVACANIG-TLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCG 402

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
             ++A +VF+ + E+ VV + +MI G+ +      ++ +F +M+S  V   +Y V+  L 
Sbjct: 403 DLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILN 462

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A A    ++  +++H +   + L+ N  V   L D Y K G + DA  VF  ++   + I
Sbjct: 463 ACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFS-HMKKKDVI 521

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +WN M+ GY +    +  L LF  ++ R   PD  +   +L A C +  A +  + I   
Sbjct: 522 SWNTMIGGYTKNSLPNEALTLFAEMQ-RESKPDGTTVACILPA-CASLAALDKGREIHGY 579

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
            +R            ++    + G L  A  +   +P   D   W  +++   +HG    
Sbjct: 580 ALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIP-NKDLVSWTVMIAGYGMHGYGSE 638

Query: 390 ASKM--GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           A       R+  I P D+ +++ +    S  G  DE  ++  +MK
Sbjct: 639 AINTFNQMRMTGIEP-DEVSFISILYACSHSGLLDEGWKIFNIMK 682



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 114/259 (44%), Gaps = 8/259 (3%)

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G  LV  Y +       + VFD++ E  +  +  MI  ++ +    +S+++F  M    +
Sbjct: 188 GVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGI 247

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               Y  S  L+  A +A +E+ R +HG     G +    V   LI  Y     V  A++
Sbjct: 248 KPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQK 307

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FDE L+  + I+WN+M++GY + G     +E+F  + + G   D  + + V  A  N G
Sbjct: 308 LFDE-LTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIG 366

Query: 318 --LAGESEKWIERMKVR-YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
             L G   K +    ++   L+  +     L+    + G L  A R+   M  E     W
Sbjct: 367 TLLLG---KVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSW 422

Query: 375 RALLSFSAIHGKADMASKM 393
            ++++     G +D A K+
Sbjct: 423 TSMITGYVREGLSDGAIKL 441



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 5/147 (3%)

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           IV F +   L +++ +    ++S+     YC    L+  AE  ++   R +      SG+
Sbjct: 124 IVEFCEVGDLKNAMELLCSSQNSNFDLGAYC--SILQLCAERKSIRDGRRVRSIIESSGV 181

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
             + I+G  L+  Y K G + + R VFD+ LS      WN M++ Y+  G+    + LF 
Sbjct: 182 MIDGILGVKLVFMYVKCGDLKEGRMVFDK-LSESKIFLWNLMISEYSGSGNYGESINLFK 240

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLA 319
            +   G  P+ Y+F ++L   C A +A
Sbjct: 241 QMLELGIKPNSYTFSSILK--CFAAVA 265


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 203/562 (36%), Positives = 318/562 (56%), Gaps = 13/562 (2%)

Query: 21  VHARALKSSQADRSIYNNLI---TNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + A A+KS Q D S    LI   T     + +SY+  LF+ +  P+IV + ++   +S S
Sbjct: 50  IQAYAIKSHQEDVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRS 109

Query: 78  --PLSL-NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             PL + N+F+ +L       LP+  T  SL K CA ++ A   G  LH LS+KL + D 
Sbjct: 110 TNPLEVFNLFVEILED---DLLPDNYTFPSLLKACA-VAKALEEGRQLHCLSMKLGVDDN 165

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +    L++ Y+     D A+ VFD I E  VVCY AMI G+A+ +R  ++LS+F +M+ 
Sbjct: 166 VYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQG 225

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            ++      +   L + A L +++  + IH +A   G  + V V T LID + K G + D
Sbjct: 226 KNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDD 285

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F EN+   ++ AW+AM+  YA  G     + +F  +      PDE +FL +L A  
Sbjct: 286 AVSIF-ENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACS 344

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           + GL  E  ++   M   + + P ++HY  ++  +GRAG LEDA      +P  P   +W
Sbjct: 345 HTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLW 404

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           R LL+  + H   ++A K+ +R+++++      YVI++N+ +   +W+ V  +RKVMKDR
Sbjct: 405 RILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDR 464

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH-N 493
           +  K  G S IEV   VH F +GD +   T  ++  L E+++E +  GYVP    ++H +
Sbjct: 465 KAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHAD 524

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           +GD+EK   L YHSEKLA+AFGL++  P G T+R+VKNLR+CRDCH + K IS +  R++
Sbjct: 525 MGDQEKEITLRYHSEKLAIAFGLLNTPP-GTTIRVVKNLRVCRDCHSAAKLISLIFGRKV 583

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           V+RDV R+H F +G C+C D W
Sbjct: 584 VLRDVQRFHHFEDGKCSCRDFW 605


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 195/544 (35%), Positives = 309/544 (56%), Gaps = 11/544 (2%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N L   Y K+  L  + +LF+ +P  N+ +W A+++  +N      SL  FL M R   
Sbjct: 172 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRRE-- 229

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYSRFRSP 151
               P++  L S+F+ CA L    + G  +H+  ++  L D+  C GS+L H Y R    
Sbjct: 230 -GMHPDEFGLGSVFRCCAGLRDV-VTGRQVHAYVVRSGL-DRDMCVGSSLAHMYMRCGCL 286

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
              + V   +    +V    +I G  QN     +L  F  MRS  V + +     A+ + 
Sbjct: 287 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 346

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           ++LAA+ Q + IHG  + +G+D+ V V T L+  Y + G + D+ RVF       ++   
Sbjct: 347 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGS-DTFLL 405

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           +AM++ Y   G     +ELF  +   G  P + +FLA+L A  ++GL  E     E M  
Sbjct: 406 SAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 465

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y ++P ++HYTC++  +GR+G L++AE + ++MP  PD  +W+ LLS        DMA 
Sbjct: 466 TYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAE 525

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           ++ KR+I+++P+D ++YV+++N+ +   RW +V+EVRK M+D  VRKE G SW+E+KG +
Sbjct: 526 RIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHI 585

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F  GD  H R ++I   L E+M +  + GY P    +LH++ D EK  +L +HSEKLA
Sbjct: 586 HQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLA 645

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AF  +S  P G  +R++KNLR+C DCH + K +S+V  REIVVRDV+R+H F +G C+C
Sbjct: 646 IAFAFLS-LPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSC 704

Query: 572 GDLW 575
            D W
Sbjct: 705 RDYW 708



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 41/186 (22%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+   R +H  A  SG   +      L+  Y   G ++ AR +F E +   N ++WN + 
Sbjct: 118 ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELF-ERIPRRNVMSWNILF 176

Query: 276 AGYAQQGDQSTVLELFH-----------------------------LLEMR--GFAPDEY 304
            GY + GD     +LF                               L+MR  G  PDE+
Sbjct: 177 GGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEF 236

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG----RAGRLEDAER 360
              +V    C AGL    +    R    Y +  GL+   C+ S++     R G L++ E 
Sbjct: 237 GLGSVFR--CCAGL---RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEA 291

Query: 361 IAMAMP 366
           +   +P
Sbjct: 292 VLRMLP 297


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 326/563 (57%), Gaps = 14/563 (2%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSK---SNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +H+R ++   A D  +  +L+  Y+K      +  S ++F  +P  N++SWTA+I+A+  
Sbjct: 253 LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQ 312

Query: 77  S----PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           S      ++ +F  M+   +    PN  + +S+ K C +LS  +  G  ++S ++KL + 
Sbjct: 313 SGECDKEAIELFCKMI---SGHIRPNHFSFSSVLKACGNLSDPYT-GEQVYSYAVKLGIA 368

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                G++L+  Y+R    ++A+K FD + E+++V Y A++ G+A+N +  ++  +F ++
Sbjct: 369 SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 428

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             + +G + +  +  L  AA + AM +   IHG  +  G   N  +   LI  Y + G +
Sbjct: 429 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 488

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A +VF+E +   N I+W +M+ G+A+ G  +  LE+FH +   G  P+E +++AVL+A
Sbjct: 489 EAAFQVFNE-MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 547

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  E +K    M   + + P +EHY C++  +GR+G L +A     +MP   DA 
Sbjct: 548 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 607

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VWR LL    +HG  ++     + +++  P D +AY++++N+ +  G+W +V ++RK MK
Sbjct: 608 VWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMK 667

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           +R + KE G SWIEV+ +VH F  G+  H +   IY +L +L  + + +GY+P  D +LH
Sbjct: 668 ERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLH 727

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + +K + L+ HSEK+A+AFGL+S   + K +RI KNLR+C DCH + KYIS    RE
Sbjct: 728 DIEEEQKEQFLFQHSEKIAVAFGLIS-TSQSKPIRIFKNLRVCGDCHTAIKYISMATGRE 786

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H   NG C+C D W
Sbjct: 787 IVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 201/411 (48%), Gaps = 22/411 (5%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSN 76
           ++VH + ++S  + D  + N LI+ YSK      +  +F  + +  ++VSW+A++S  +N
Sbjct: 46  KLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFAN 105

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + +      + L    L F PN+   A++ + C++ ++A++ G  ++   +K    +   
Sbjct: 106 NSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWV-GEIIYGFVVKTGYLEADV 164

Query: 137 C-GSALVHFYSRFRSP-DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
           C G  L+  + +      +A KVFD++ ER++V +  MI  FAQ     D++ +F DM  
Sbjct: 165 CVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMEL 224

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA---GI 251
           S      +  S  L A  EL  +   + +H   +  GL  +V VG  L+D Y K    G 
Sbjct: 225 SGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGS 284

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVL 310
           V D+R+VF E +   N ++W A++  Y Q G+     +ELF  +      P+ +SF +VL
Sbjct: 285 VDDSRKVF-EQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 343

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMP 366
            A  N      S+ +       Y ++ G+    C    LIS   R+GR+EDA R A  + 
Sbjct: 344 KACGNL-----SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA-RKAFDIL 397

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           FE +   + A++   A + K++ A  +   + D      SA+   A++LSG
Sbjct: 398 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG-IGISAFTF-ASLLSG 446



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 14/206 (6%)

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
           RL  + S    M   +    +   S  L++       +  +++H   + SGL+ + +V  
Sbjct: 6   RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 65

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG-DQSTVLELFHLLEMRGF 299
            LI  Y K G    AR +F+   +  + ++W+AM++ +A    +   +     +LE+ GF
Sbjct: 66  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL-GF 124

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTC----LISAMGR-AG 353
            P+EY F AV+ A  NA  A     W+  +   + ++ G LE   C    LI    + +G
Sbjct: 125 YPNEYCFAAVIRACSNANYA-----WVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 179

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLS 379
            L  A ++   MP E +   W  +++
Sbjct: 180 DLGSAYKVFDKMP-ERNLVTWTLMIT 204


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 326/563 (57%), Gaps = 14/563 (2%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSK---SNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +H+R ++   A D  +  +L+  Y+K      +  S ++F  +P  N++SWTA+I+A+  
Sbjct: 271 LHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQ 330

Query: 77  S----PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           S      ++ +F  M+   +    PN  + +S+ K C +LS  +  G  ++S ++KL + 
Sbjct: 331 SGECDKEAIELFCKMI---SGHIRPNHFSFSSVLKACGNLSDPYT-GEQVYSYAVKLGIA 386

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                G++L+  Y+R    ++A+K FD + E+++V Y A++ G+A+N +  ++  +F ++
Sbjct: 387 SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 446

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             + +G + +  +  L  AA + AM +   IHG  +  G   N  +   LI  Y + G +
Sbjct: 447 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 506

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A +VF+E +   N I+W +M+ G+A+ G  +  LE+FH +   G  P+E +++AVL+A
Sbjct: 507 EAAFQVFNE-MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 565

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  E +K    M   + + P +EHY C++  +GR+G L +A     +MP   DA 
Sbjct: 566 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 625

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VWR LL    +HG  ++     + +++  P D +AY++++N+ +  G+W +V ++RK MK
Sbjct: 626 VWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMK 685

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           +R + KE G SWIEV+ +VH F  G+  H +   IY +L +L  + + +GY+P  D +LH
Sbjct: 686 ERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLH 745

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + +K + L+ HSEK+A+AFGL+S   + K +RI KNLR+C DCH + KYIS    RE
Sbjct: 746 DIEEEQKEQFLFQHSEKIAVAFGLIS-TSQSKPIRIFKNLRVCGDCHTAIKYISMATGRE 804

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H   NG C+C D W
Sbjct: 805 IVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 201/411 (48%), Gaps = 22/411 (5%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSN 76
           ++VH + ++S  + D  + N LI+ YSK      +  +F  + +  ++VSW+A++S  +N
Sbjct: 64  KLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFAN 123

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + +      + L    L F PN+   A++ + C++ ++A++ G  ++   +K    +   
Sbjct: 124 NSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWV-GEIIYGFVVKTGYLEADV 182

Query: 137 C-GSALVHFYSRFRSP-DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
           C G  L+  + +      +A KVFD++ ER++V +  MI  FAQ     D++ +F DM  
Sbjct: 183 CVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMEL 242

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA---GI 251
           S      +  S  L A  EL  +   + +H   +  GL  +V VG  L+D Y K    G 
Sbjct: 243 SGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGS 302

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVL 310
           V D+R+VF E +   N ++W A++  Y Q G+     +ELF  +      P+ +SF +VL
Sbjct: 303 VDDSRKVF-EQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 361

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMP 366
            A  N      S+ +       Y ++ G+    C    LIS   R+GR+EDA R A  + 
Sbjct: 362 KACGNL-----SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA-RKAFDIL 415

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           FE +   + A++   A + K++ A  +   + D      SA+   A++LSG
Sbjct: 416 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG-IGISAFTF-ASLLSG 464



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 14/206 (6%)

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
           RL  + S    M   +    +   S  L++       +  +++H   + SGL+ + +V  
Sbjct: 24  RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 83

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG-DQSTVLELFHLLEMRGF 299
            LI  Y K G    AR +F+   +  + ++W+AM++ +A    +   +     +LE+ GF
Sbjct: 84  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL-GF 142

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTC----LISAMGR-AG 353
            P+EY F AV+ A  NA  A     W+  +   + ++ G LE   C    LI    + +G
Sbjct: 143 YPNEYCFAAVIRACSNANYA-----WVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 197

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLS 379
            L  A ++   MP E +   W  +++
Sbjct: 198 DLGSAYKVFDKMP-ERNLVTWTLMIT 222


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 307/563 (54%), Gaps = 14/563 (2%)

Query: 22  HARALKSSQADRSIYNNLITN------YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           H +AL      RS  N ++        Y+K   L Y+ ++F+ +   N VSW+A+I  + 
Sbjct: 228 HGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYV 287

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            S     +L +F  M+    +   P   TL S+ + CA L+     G  LH   +KL   
Sbjct: 288 ASDCMKEALELFDQMILKDAMD--PTPVTLGSVLRACAKLTD-LSRGRKLHCYIIKLGSV 344

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                G+ L+  Y++    D+A + FDE+  +D V + A++ G  QN     +LS+F  M
Sbjct: 345 LDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMM 404

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           + S +   +  + G L A + LAA++     HG+ +V G   + ++   LID Y K G +
Sbjct: 405 QLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKI 464

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           S AR VF+  +   + ++WNAM+ GY   G     L LFH L   G  PD+ +F+ +L++
Sbjct: 465 SFAREVFNR-MDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++GL  E   W + M   + + P +EH  C++  +GRAG +++A      MPFEPD  
Sbjct: 524 CSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVR 583

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W ALLS   IH   ++  ++ K++  + P     +V+++N+ S  GRWD+ A +R   K
Sbjct: 584 IWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQK 643

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           D  ++K  G SWIE+ G VH F+ GD+ H +   I  KL EL+ E +RLGY      +  
Sbjct: 644 DWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQ 703

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V + EK + L YHSEKLA+AFG+++    G+ + + KNLR+C DCH + K+++ + +RE
Sbjct: 704 DVEEEEKEQILLYHSEKLAIAFGILN-LKAGRPILVTKNLRVCGDCHTAIKFMTLITKRE 762

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I VRD NR+H F NG+C CGD W
Sbjct: 763 ITVRDANRFHHFKNGTCNCGDFW 785



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 189/397 (47%), Gaps = 20/397 (5%)

Query: 16  TDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T+ + +H   LK +S AD S+ + L   Y   N +  + RLF+ IP+P+++ W  +I A+
Sbjct: 25  TEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAY 84

Query: 75  S-NSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + N P   +++++ SML    L   PN+ T   + K C+ L  A   G+ +HS +    L
Sbjct: 85  AWNGPFDGAIDLYHSMLH---LGVRPNKYTYPFVLKACSGLL-AIEDGVEIHSHAKMFGL 140

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F  +ALV FY++      A+++F  +  RDVV + AMI G +      D++ +   
Sbjct: 141 ESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQ 200

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+   +      + G L    E  A+   + +HG+ V    D  V+VGTGL+D Y K   
Sbjct: 201 MQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQC 260

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVL 310
           +  AR++FD  + V N ++W+AM+ GY         LELF  + ++    P   +  +VL
Sbjct: 261 LLYARKIFDV-MGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVL 319

Query: 311 TALCNAGLAGESEK---WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            A           K   +I ++     +  G      L+S   + G ++DA R    M  
Sbjct: 320 RACAKLTDLSRGRKLHCYIIKLGSVLDILLG----NTLLSMYAKCGVIDDAIRFFDEMN- 374

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGK--RLIDINP 402
             D+  + A++S    +G A +A  + +  +L  I+P
Sbjct: 375 PKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDP 411



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 138/296 (46%), Gaps = 8/296 (2%)

Query: 139 SALVHFYSRFRSPDN----AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
           S+++H  +R     N    A+++FDEI    V+ +  +I  +A N     ++ ++  M  
Sbjct: 43  SSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLH 102

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V    Y     L+A + L A+E    IH HA + GL+ +V V T L+D Y K GI+ +
Sbjct: 103 LGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVE 162

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A+R+F  ++S  + +AWNAM+AG +  G     ++L   ++  G  P+  + + VL  + 
Sbjct: 163 AQRLF-SSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVG 221

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            A   G   K +    VR   + G+   T L+    +   L  A +I   M    + + W
Sbjct: 222 EAKALGHG-KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVS-W 279

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
            A++           A ++  ++I  +  D +  V + +VL    +  +++  RK+
Sbjct: 280 SAMIGGYVASDCMKEALELFDQMILKDAMDPTP-VTLGSVLRACAKLTDLSRGRKL 334



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 9/215 (4%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE--NLSV 265
           L A  +  ++ + + IH H + +  + +  V   L   Y     V  ARR+FDE  N SV
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
              I WN ++  YA  G     ++L+H +   G  P++Y++  VL A C+  LA E    
Sbjct: 75  ---ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKA-CSGLLAIEDGVE 130

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           I      + LE  +   T L+    + G L +A+R+  +M    D   W A+++  +++G
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLYG 189

Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
             D A ++  ++ +     +S+ ++   VL  VG 
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIV--GVLPTVGE 222


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 311/559 (55%), Gaps = 10/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   K   + D ++ N L+T Y K+  +    +L+  +   +++SW A +S   +  +
Sbjct: 437 IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGM 496

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               L IF  ML      F+PN  T  S+  +C+ L     +G  +H+  +K  L D  F
Sbjct: 497 YDRPLTIFYHMLEE---GFIPNMYTFISILGSCSCLFDVH-YGRQVHAHIIKNQLDDNNF 552

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +AL+  Y++    ++A   F+ +  RD+  +  +I  +AQ ++   +L+ F  M+   
Sbjct: 553 VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG 612

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    + ++G L   + LA++E  + +H     SG   ++ VG+ L+D Y K G + +A 
Sbjct: 613 VKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F E L   ++IAWN ++ GYAQ G  +  L  F ++   G +PD  +F  +L+A  + 
Sbjct: 673 ALF-EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQ 731

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E ++    M   + + P ++H  C++  +GR G+ ++ E     M    +A +W  
Sbjct: 732 GLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWET 791

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           +L  S +H    +  K   +L ++ P ++S+Y++++N+ +  GRWD+V  VR +M  + V
Sbjct: 792 VLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGV 851

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE G SW+E  G+VH F++ D  H + ++I+ KL EL  E   + YVP  + +LHNVG+
Sbjct: 852 KKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGE 911

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK+E L +HSE+LAL F L+S +   K +RI KNLRICRDCH+  K+IS +  +EIVVR
Sbjct: 912 TEKKENLRFHSERLALGFALISTSSE-KKIRIFKNLRICRDCHDVMKHISSITNQEIVVR 970

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           DV R+H F NG+C+C D W
Sbjct: 971 DVRRFHHFKNGACSCNDFW 989



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 173/353 (49%), Gaps = 14/353 (3%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS---AHSNSPLSLNIFLSML 88
           D  ++ +L+  Y+K    +Y+  +   +P  ++VSWTALI    A   +  S+ +F  M 
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                  +PN+ TLA+  K C SL  A   G  +H+ + KL L    F GSALV  Y++ 
Sbjct: 206 NE---GIMPNEFTLATGLKAC-SLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKC 261

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              + A K+F  + E++ V +  ++ G+AQ   +   L +F  M   DV    + ++  L
Sbjct: 262 GEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVL 321

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +  A    ++Q +VIH   +  G + N  +G GL+D Y K G+  DA  VF + +   + 
Sbjct: 322 KGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF-KTIKKPDI 380

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG--LAGESEKWI 326
           + W+A++    QQG     ++LFHL+ +    P++Y+  ++L+A  N G    G+S   I
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQS---I 437

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
                +Y  E  +     L++   + G + D  ++  +M  + D   W A LS
Sbjct: 438 HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLS 489



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 182/414 (43%), Gaps = 14/414 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           +++H+  +K   + +  I   L+  YSK  L   ++ +F  I  P+IV W+ALI+     
Sbjct: 334 QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQ 393

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             S  S+ +F  M    TL   PNQ T+ SL  + A+ +    +G S+H+   K      
Sbjct: 394 GQSEESIKLFHLMRLGDTL---PNQYTICSLL-SAATNTGNLQYGQSIHACVWKYGFETD 449

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +ALV  Y +     +  K+++ + +RD++ + A + G          L++F  M  
Sbjct: 450 VAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLE 509

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                 MY     L + + L  +   R +H H + + LD N  V T LID Y K   + D
Sbjct: 510 EGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLED 569

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F+  LSV +   W  ++  YAQ       L  F  ++  G  P+E++    L+  C
Sbjct: 570 ADVAFNR-LSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSG-C 627

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++  + E  + +  M  +      +   + L+    + G +E+AE +  A+    D   W
Sbjct: 628 SSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAW 686

Query: 375 RALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAE 426
             ++   A +G+ + A    + ++D  I+P D   +  + +  S  G  +E  E
Sbjct: 687 NTIICGYAQNGQGNKALTAFRMMLDEGISP-DGVTFTGILSACSHQGLVEEGKE 739



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 145/295 (49%), Gaps = 6/295 (2%)

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
           +  +S+ + CAS   +     ++H L +K  ++       +LV+ Y++ R    A+ V  
Sbjct: 113 KYYSSMLRECAS-KRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLA 171

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
           ++ +RDVV + A+I G        DS+ +F +M++  +    + ++  L+A +   A++ 
Sbjct: 172 KMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDL 231

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            + +H  A   GL  ++ VG+ L+D Y K G +  A ++F   +   N + WN ++ GYA
Sbjct: 232 GKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFI-GMPEQNDVTWNVLLNGYA 290

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q+GD + VL+LF  +       +E++   VL    N+    + +  I  + ++   E G 
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQV-IHSLIIKCGYE-GN 348

Query: 340 EHYTC-LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           E   C L+    + G   DA  +   +  +PD  VW AL++     G+++ + K+
Sbjct: 349 EFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQSEESIKL 402


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 194/571 (33%), Positives = 314/571 (54%), Gaps = 35/571 (6%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N LIT Y ++ +++ +  LF+ +P  N +SW  +I+ ++ +  S      +        
Sbjct: 356 WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           LP+  +L S+F  C+++  A   G  +HSL++K+      F  +AL+  Y + R+ + A+
Sbjct: 416 LPSLSSLTSIFFACSNIV-ALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYAR 474

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS---------------- 199
           +VF  +  +D+V + + +    QN  L ++ + F +M S D  S                
Sbjct: 475 QVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNE 534

Query: 200 ------TMYC---------VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
                 TM+C         ++  L     L A +  + IH  A+  G+D  +IV   LI 
Sbjct: 535 AMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS 594

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G  +D+RR+FD  +   +   WN ++ GYAQ G     ++++  +E  G  P+E 
Sbjct: 595 MYFKCG-CADSRRIFDL-MEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEV 652

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F+ +L A  +AGL  E  K+ + M   Y L P  EHY C++  +GR G ++ AE+    
Sbjct: 653 TFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYD 712

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           MP EPD  +W ALL    IH  A++  +  ++L  I P +   YV+++N+ S +G W EV
Sbjct: 713 MPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEV 772

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
           AEVRK+MK + V KE G SW ++K K+H F+ GD+ HE+ E+I   L EL    +  GYV
Sbjct: 773 AEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYV 832

Query: 485 PVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKY 544
           P  + +LH++ + +K  +L YHSEKLA+A+ L++  P+G  ++I+KNLRIC DCH   K+
Sbjct: 833 PDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLA-TPKGMPIQILKNLRICGDCHTFIKF 891

Query: 545 ISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +S V +R+I +RD NR+H F NGSC+C D W
Sbjct: 892 VSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/372 (19%), Positives = 152/372 (40%), Gaps = 60/372 (16%)

Query: 55  LFNHIPSPNIVSWTALISA--HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112
           +F+ +P  +I++W ++ISA  H+  P +       +         N RT A L      L
Sbjct: 56  VFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGG------NMRTGAILLSGYGRL 109

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
                       +     L       +A++  Y +      A+++FD +  RDV  + +M
Sbjct: 110 GRVLEARRVFDGM-----LERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSM 164

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG-------------------------- 206
           + G+  + ++VD+ ++F  M   ++ S    +SG                          
Sbjct: 165 LTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQ 224

Query: 207 --------ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                   A++    L  +E  RV+   A+ +G +R+V++GT +++ Y +   V D    
Sbjct: 225 SNFASALSAVKGLGNLDVLESLRVL---ALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E++   N   W+ M+A  +  G     + ++    ++  A       A++T L   G 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRT----ALITGLAQCGR 337

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             ++    E++      EP +  +  LI+   + G + +A+ +   MPF  +   W  ++
Sbjct: 338 IDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMI 391

Query: 379 SFSAIHGKADMA 390
           +  A +G+++ A
Sbjct: 392 AGYAQNGRSEEA 403



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 49/213 (23%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           SA +    R      A++VFD +  RD++ + +MI                         
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMI------------------------- 72

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
            + YC +G   AA +L           +  +SG   N+  G  L+ GYG+ G V +ARRV
Sbjct: 73  -SAYCHNGMPDAARDL-----------YDAISG--GNMRTGAILLSGYGRLGRVLEARRV 118

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD  L   N++AWNAM++ Y Q GD +    LF  +  R    D  S+ ++LT  C++  
Sbjct: 119 FDGMLE-RNTVAWNAMISCYVQNGDITMARRLFDAMPSR----DVSSWNSMLTGYCHSLQ 173

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             ++    E+M      E  L  +T +IS  GR
Sbjct: 174 MVDARNLFEKMP-----ERNLVSWTVMISGYGR 201



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 130/321 (40%), Gaps = 48/321 (14%)

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV---------------------- 174
           C +AL+   ++    D+A+ +F++I E  VV + A+I                       
Sbjct: 324 CRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRN 383

Query: 175 ---------GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
                    G+AQN R  ++L +  ++  S +  ++  ++    A + + A+E    +H 
Sbjct: 384 TISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS 443

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
            AV  G   N      LI  YGK   +  AR+VF   +   + ++WN+ +A   Q     
Sbjct: 444 LAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSR-MVTKDIVSWNSFLAALVQNDLLD 502

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
                F  +  R    D+ S+  +++A  +A  + E+    + M   ++L P     T L
Sbjct: 503 EARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTIL 557

Query: 346 ISAMGRAGRLEDAERI---AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
           +   G  G  +  ++I   A+ +  + +  V  AL+S     G AD      +R+ D+  
Sbjct: 558 LGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-----SRRIFDLME 612

Query: 403 YDDS---AYVIVANVLSGVGR 420
             D      +I      G+GR
Sbjct: 613 ERDIFTWNTIITGYAQHGLGR 633


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 203/590 (34%), Positives = 319/590 (54%), Gaps = 41/590 (6%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   K   +++  +   LI  YS    +  +  +F+ I   ++VSWT +++  + +  
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F  M     + F PN  T AS+FK C  L  AF  G S+H  +LK       +
Sbjct: 221 FKEALKLFSQM---RMVGFKPNNFTFASVFKACLGLE-AFDVGKSVHGCALKSRYELDLY 276

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G AL+  Y++    D+A++ F+EI ++DV+ +  MI  +AQ+ +  +++ +F  MR + 
Sbjct: 277 VGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQAL 336

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    +  +  L+A A +  +     IH H +  GL  +V V   L+D Y K G + ++ 
Sbjct: 337 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSM 396

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFA--------------- 300
            +F E+    N + WN ++ G+ Q GD    L LF ++LE R  A               
Sbjct: 397 ELFAESPH-RNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASL 455

Query: 301 ---------------PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
                          PD+ +F+ VL+A  NAGL  + + +   M   + +EP +EHYTC+
Sbjct: 456 AALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCM 515

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +  +GR G L+ A ++   +PF+P   VWRALL    IH   ++     +R++++ P D 
Sbjct: 516 VWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDK 575

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
           + +V+++N+ +   RWD VA VRK MK + V+KE G SWIE +G VH F  GD  H    
Sbjct: 576 ATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVR 635

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT 525
            I   L  L  + ++ GY+P ++ +L +V D EK   LW HSE+LAL+FG++   P G  
Sbjct: 636 VINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIR-TPSGSP 694

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +RI+KNLRIC DCH + K IS+VV+REIVVRD+NR+H F  G C+CGD W
Sbjct: 695 IRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 161/359 (44%), Gaps = 5/359 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LK     D   +N L+  Y KS+ L  + +LF+ +P  N +S+  LI  ++ S  
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            L      +R        N     ++ K   S     L G  +H+   KL      F G+
Sbjct: 120 FLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGEL-GWGIHACIFKLGHESNAFVGT 178

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  YS     D A++VFD I  +D+V +  M+  FA+N    ++L +F+ MR      
Sbjct: 179 ALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKP 238

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             +  +   +A   L A +  + +HG A+ S  + ++ VG  L+D Y K+G + DARR F
Sbjct: 239 NNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAF 298

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +E +   + I W+ M+A YAQ       +E+F  +      P++++F +VL A C     
Sbjct: 299 EE-IPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQA-CATMEG 356

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
                 I    ++  L   +     L+    + GR+E++  +    P   D   W  ++
Sbjct: 357 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVT-WNTVI 414


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 191/540 (35%), Positives = 305/540 (56%), Gaps = 3/540 (0%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N LI  + +   L  ++++F+ +   N+ +W A++S       + N          L F
Sbjct: 26  HNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGF 85

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           LP++ TL S+ + CA L  ++  G  +H+  LK         GS+L H Y +  S    +
Sbjct: 86  LPDEFTLGSVLRGCAGLRASYA-GKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGE 144

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           KV   +R R+VV +  +I G AQN      L ++  M+ S +      +   + ++AELA
Sbjct: 145 KVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELA 204

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            + Q + IH  A+ +G +  V V + LI  Y K G + D+ +    +    +S+ W++M+
Sbjct: 205 TLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKAL-LDCEHPDSVLWSSMI 263

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           A Y   G     + LF  +E  G   ++ +FL++L A  + GL  +   + + M  +Y L
Sbjct: 264 AAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGL 323

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           +P LEHYTC++  +GR+G L++AE +  +MP E D  +W+ LLS   IH  ADMA++  +
Sbjct: 324 KPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAE 383

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
            ++ +NP D + YV+++N+ +   RW +V++VR  M+DR V+KE G SW+EVK +V  F 
Sbjct: 384 EILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFS 443

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
            GD+ H  +E+I   L ELMEE +  GYVP    + H+    EK  +L  HSEKLA+AFG
Sbjct: 444 MGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFG 503

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           L++  P G  +R++KNLRIC DCH + K IS +  REI+VRD +R+H F +G C+CGD W
Sbjct: 504 LMN-IPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           RN++    LI+G+ + G +  A +VFDE L   N   WNAM++G  Q       L LF  
Sbjct: 21  RNIMSHNILINGHVQHGDLDSAIKVFDEMLE-RNVATWNAMVSGLIQFEFNENGLFLFRE 79

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           +   GF PDE++  +VL   C    A  + K +    ++Y  E  L   + L     ++G
Sbjct: 80  MHELGFLPDEFTLGSVLRG-CAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSG 138

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
            L + E++  AM    +   W  L++ +A +G
Sbjct: 139 SLGEGEKVIKAMRIR-NVVAWNTLIAGNAQNG 169


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 189/541 (34%), Positives = 309/541 (57%), Gaps = 3/541 (0%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           +YN LIT   +  ++  +  LF  +   + ++WT +++  + + L L       R     
Sbjct: 214 MYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG 273

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
              +Q T  S+   C +L+ A   G  +H+   +    D  F GSALV  YS+ RS   A
Sbjct: 274 VGIDQYTFGSILTACGALA-ASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLA 332

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           + VF  +  R+++ + AMIVG+ QN+   +++  F++M+   +    + +   + + A L
Sbjct: 333 EAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANL 392

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           A++E+    H  A+VSGL R + V   L+  YGK G + DA R+FDE +S  + ++W A+
Sbjct: 393 ASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDE-MSFHDQVSWTAL 451

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + GYAQ G     ++LF  + + G  PD  +F+ VL+A   AGL  +   + + M+  + 
Sbjct: 452 VTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHD 511

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           + P  +HYTC+I    R+GR ++AE     MP  PDA  W  LLS   + G  ++     
Sbjct: 512 IVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAA 571

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           + L++ +P + ++YV++ ++ +  G+W EVA +R+ M+DR+V+KE G SWI+ K KVH+F
Sbjct: 572 ENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIF 631

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
            A D+ H  +  IY KL  L  +    GY P    +LH+V D +K   + +HSEKLA+AF
Sbjct: 632 SADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAF 691

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+   P+   +RIVKNLR+C DCH + K+IS++  R+I+VRD  R+H+F +G+C+CGD 
Sbjct: 692 GLIF-VPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDF 750

Query: 575 W 575
           W
Sbjct: 751 W 751



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 219/507 (43%), Gaps = 66/507 (13%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR +     D +++  N L++  + S L+    RLF  +P  + VS+ ALI+  S+
Sbjct: 63  RLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSS 122

Query: 77  --SPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
             SP  S+ ++ ++LR  ++   P + TL+++    ++LS   L G S+H   L+L    
Sbjct: 123 TGSPARSVQLYRALLREESVR--PTRITLSAMIMVASALSDRAL-GHSVHCQVLRLGFGA 179

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIR------------------------------- 162
             F GS LV  Y++     +A++VF E+                                
Sbjct: 180 YAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMV 239

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +RD + +  M+ G  QN   +++L VF  MR+  VG   Y     L A   LAA E+ + 
Sbjct: 240 DRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQ 299

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH +   +  + NV VG+ L+D Y K   +  A  VF   ++  N I+W AM+ GY Q  
Sbjct: 300 IHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF-RRMTCRNIISWTAMIVGYGQNA 358

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                +  F  ++M G  PD+++  +V+++  N     E  ++         L  GL  Y
Sbjct: 359 CSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQF-----HCLALVSGLMRY 413

Query: 343 ----TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
                 L++  G+ G +EDA R+   M F  D   W AL++  A  GKA     + ++++
Sbjct: 414 ITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVTGYAQFGKAKETIDLFEKML 472

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
                 D    I   VLS   R   V              E G  + +   K H  +  D
Sbjct: 473 VNGLKPDGVTFI--GVLSACSRAGLV--------------EKGCDYFDSMQKDHDIVPID 516

Query: 459 RMHERTEDIYTKLAELMEECERLGYVP 485
             +    D+Y++     E  E +  +P
Sbjct: 517 DHYTCMIDLYSRSGRFKEAEEFIKQMP 543


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 189/541 (34%), Positives = 308/541 (56%), Gaps = 3/541 (0%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           +YN LIT   +  ++  +  LF  +   + ++WT +++  + + L L       R     
Sbjct: 214 MYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEG 273

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
              +Q T  S+   C +L+ A   G  +H+   +    D  F GSALV  YS+ RS   A
Sbjct: 274 VGIDQYTFGSILTACGALA-ALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLA 332

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           + VF  +  R+++ + AMIVG+ QN+   +++  F++M+   +    + +   + + A L
Sbjct: 333 EAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANL 392

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           A++E+    H  A+VSGL R + V   L+  YGK G + DA R+FDE +S  + ++W A+
Sbjct: 393 ASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDE-MSFHDQVSWTAL 451

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + GYAQ G     ++LF  +   G  PD  +F+ VL+A   AGL  +   + + M+  + 
Sbjct: 452 VTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHG 511

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           + P  +HYTC+I    R+GR ++AE     MP  PDA  W  LLS   + G  ++     
Sbjct: 512 IVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAA 571

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           + L++ +P + ++YV++ ++ +  G+W EVA +R+ M+DR+V+KE G SWI+ K KVH+F
Sbjct: 572 ENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIF 631

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
            A D+ H  +  IY KL  L  +    GY P    +LH+V D +K   + +HSEKLA+AF
Sbjct: 632 SADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAF 691

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+   P+   +RIVKNLR+C DCH + K+IS++  R+I+VRD  R+H+F +G+C+CGD 
Sbjct: 692 GLIF-VPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDF 750

Query: 575 W 575
           W
Sbjct: 751 W 751



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 220/507 (43%), Gaps = 66/507 (13%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR +     D +++  N L++  + S L+    RLF  +P  + VS+ ALI+  S+
Sbjct: 63  RLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSS 122

Query: 77  --SPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
             SP  S+ ++ ++LR  ++   P + TL+++    ++LS   L G S+H   L+L    
Sbjct: 123 TGSPARSVQLYRALLREESVR--PTRITLSAMIMVASALSDRAL-GHSVHCQVLRLGFGA 179

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIR------------------------------- 162
             F GS LV  Y++     +A++VF E+                                
Sbjct: 180 YAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMV 239

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +RD + +  M+ G  QN   +++L VF  MR+  VG   Y     L A   LAA+E+ + 
Sbjct: 240 DRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQ 299

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH +   +  + NV VG+ L+D Y K   +  A  VF   ++  N I+W AM+ GY Q  
Sbjct: 300 IHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF-RRMTCRNIISWTAMIVGYGQNA 358

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                +  F  ++M G  PD+++  +V+++  N     E  ++         L  GL  Y
Sbjct: 359 CSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQF-----HCLALVSGLMRY 413

Query: 343 ----TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
                 L++  G+ G +EDA R+   M F  D   W AL++  A  GKA     + ++++
Sbjct: 414 ITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVTGYAQFGKAKETIDLFEKML 472

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
                 D    I   VLS   R   V              E G  + +   K H  +  D
Sbjct: 473 ANGLKPDGVTFI--GVLSACSRAGLV--------------EKGCDYFDSMQKDHGIVPID 516

Query: 459 RMHERTEDIYTKLAELMEECERLGYVP 485
             +    D+Y++     E  E +  +P
Sbjct: 517 DHYTCMIDLYSRSGRFKEAEEFIKQMP 543


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 195/544 (35%), Positives = 309/544 (56%), Gaps = 11/544 (2%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N L   Y K+  L  + +LF+ +P  N+ +W A+++  +N      SL  FL M R   
Sbjct: 110 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRRE-- 167

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYSRFRSP 151
               P++  L S+F+ CA L    + G  +H+  ++  L D+  C GS+L H Y R    
Sbjct: 168 -GMHPDEFGLGSVFRCCAGLRDV-VTGRQVHAYVVRSGL-DRDMCVGSSLAHMYMRCGCL 224

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
              + V   +    +V    +I G  QN     +L  F  MRS  V + +     A+ + 
Sbjct: 225 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 284

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           ++LAA+ Q + IHG  + +G+D+ V V T L+  Y + G + D+ RVF       ++   
Sbjct: 285 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGS-DTFLL 343

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           +AM++ Y   G     +ELF  +   G  P + +FLA+L A  ++GL  E     E M  
Sbjct: 344 SAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y ++P ++HYTC++  +GR+G L++AE + ++MP  PD  +W+ LLS        DMA 
Sbjct: 404 TYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAE 463

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           ++ KR+I+++P+D ++YV+++N+ +   RW +V+EVRK M+D  VRKE G SW+E+KG +
Sbjct: 464 RIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHI 523

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F  GD  H R ++I   L E+M +  + GY P    +LH++ D EK  +L +HSEKLA
Sbjct: 524 HQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLA 583

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AF  +S  P G  +R++KNLR+C DCH + K +S+V  REIVVRDV+R+H F +G C+C
Sbjct: 584 IAFAFLS-LPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSC 642

Query: 572 GDLW 575
            D W
Sbjct: 643 RDYW 646



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 41/186 (22%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+   R +H  A  SG   +      L+  Y   G ++ AR +F E +   N ++WN + 
Sbjct: 56  ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELF-ERIPRRNVMSWNILF 114

Query: 276 AGYAQQGDQSTVLELF-----------------------------HLLEMR--GFAPDEY 304
            GY + GD     +LF                               L+MR  G  PDE+
Sbjct: 115 GGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEF 174

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG----RAGRLEDAER 360
              +V    C AGL    +    R    Y +  GL+   C+ S++     R G L++ E 
Sbjct: 175 GLGSVFR--CCAGL---RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEA 229

Query: 361 IAMAMP 366
           +   +P
Sbjct: 230 VLRMLP 235


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 206/582 (35%), Positives = 311/582 (53%), Gaps = 38/582 (6%)

Query: 29  SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSML 88
           ++ D   +  +I  Y ++  L  + +  + +    +V+W A+IS + +    L       
Sbjct: 221 TERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFR 280

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH----------SLSLKLSLHDKPF-- 136
           +   L    ++ T  S+   CA+    FL G  +H          SL   LS+++     
Sbjct: 281 KMYLLGIQWDEFTYTSVLSACANAGF-FLHGKQVHAYILRTEPRPSLDFSLSVNNALATL 339

Query: 137 ---CG--------------------SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
              CG                    +A++  Y      D AK  F+E+ ER+++ +  MI
Sbjct: 340 YWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMI 399

Query: 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
            G AQN    +SL +F  M+S       Y  +GA+ A A LAA+   R +H   V  G D
Sbjct: 400 SGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFD 459

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
            ++  G  LI  Y K G+V  A  +F   +  L+S++WNAM+A   Q G  +  LELF L
Sbjct: 460 SSLSAGNALITMYAKCGVVEAAHCLF-LTMPYLDSVSWNAMIAALGQHGHGAQALELFEL 518

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           +      PD  +FL VL+   +AGL  E  ++ + M   Y + PG +HY  +I  + RAG
Sbjct: 519 MLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAG 578

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           +  +A+ +   MP EP   +W ALL+   IHG  D+  +  +RL ++ P  D  YV+++N
Sbjct: 579 KFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSN 638

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + + VGRWD+VA+VRK+M+D+ V+KE G SWIEV+ KVHVFL  D +H   + +Y  L E
Sbjct: 639 MYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEE 698

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L  +  +LGY+P    +LH++   +K   L  HSEKLA+ FGL+   P G T+R+ KNLR
Sbjct: 699 LGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLK-LPLGATVRVFKNLR 757

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IC DCH +FK++S+VVEREIVVRD  R+H F NG C+CG+ W
Sbjct: 758 ICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 128/537 (23%), Positives = 207/537 (38%), Gaps = 131/537 (24%)

Query: 7   QQPQPQN--TSTDPRIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           QQ  P N  + +  R VHA  + S    R  I N LI  Y KS+ L  +  LF+ I  P+
Sbjct: 21  QQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPD 80

Query: 64  IVSWTALISAHS---NSPLSLNIFLS---------------------------------M 87
           IV+ T LI+AHS   NS L+  IF +                                 +
Sbjct: 81  IVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDL 140

Query: 88  LRHPTLSFLPNQRTLASLF----------KTCASLSHAFL---FGLSLHSLSLKLSLHDK 134
           LR+    F P+  T  S+           K C  +  A +    G     L+  LS+   
Sbjct: 141 LRN---GFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSV--- 194

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERD----------------------------- 165
            F   A     S       A+K+FDE+ ERD                             
Sbjct: 195 -FVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTE 253

Query: 166 --VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
             VV + AMI G+  +   +++L +F  M    +    +  +  L A A        + +
Sbjct: 254 KLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQV 313

Query: 224 HGHAVVS----GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY- 278
           H + + +     LD ++ V   L   Y K G V +AR+VF++ + V + ++WNA+++GY 
Sbjct: 314 HAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQ-MPVKDLVSWNAILSGYV 372

Query: 279 ------------------------------AQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
                                         AQ G     L+LF+ ++  GF P +Y+F  
Sbjct: 373 NAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAG 432

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
            + A C    A    + +    VR   +  L     LI+   + G +E A  + + MP+ 
Sbjct: 433 AIIA-CAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY- 490

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDE 423
            D+  W A+++    HG    A ++ + ++  DI P D   ++ V +  S  G  +E
Sbjct: 491 LDSVSWNAMIAALGQHGHGAQALELFELMLKEDILP-DRITFLTVLSTCSHAGLVEE 546



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 152/383 (39%), Gaps = 80/383 (20%)

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           L NQ   A L + C     ++    ++H+  +      + +  + L+  Y +     +A 
Sbjct: 12  LANQYA-AQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAH 70

Query: 156 KVFDEIRE---------------------------------RDVVCYGAMIVGFAQNSRL 182
            +FDEIR+                                 RD VCY AMI G++ N+  
Sbjct: 71  HLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDG 130

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME-QCRVIHGHAVVSG---------- 231
             ++ +F D+  +      +  +  L A A +   E QC+ IH   V SG          
Sbjct: 131 FGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNA 190

Query: 232 ------------------------------LDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
                                          +R+ +  T +I GY + G + DA R F +
Sbjct: 191 LLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGEL-DAARQFLD 249

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL--- 318
            ++    +AWNAM++GY   G     LE+F  + + G   DE+++ +VL+A  NAG    
Sbjct: 250 GMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLH 309

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             +   +I R + R  L+  L     L +   + G++++A ++   MP + D   W A+L
Sbjct: 310 GKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAIL 368

Query: 379 SFSAIHGKADMASKMGKRLIDIN 401
           S     G+ D A    + + + N
Sbjct: 369 SGYVNAGRIDEAKSFFEEMPERN 391


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/571 (33%), Positives = 314/571 (54%), Gaps = 35/571 (6%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N LIT Y ++ +++ +  LF+ +P  N +SW  +I+ ++ +  S      +        
Sbjct: 356 WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           LP+  +L S+F  C+++  A   G  +HSL++K+      F  +AL+  Y + R+ + A+
Sbjct: 416 LPSLSSLTSIFFACSNIV-ALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYAR 474

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS---------------- 199
           +VF  +  +D+V + + +    QN  L ++ + F +M S D  S                
Sbjct: 475 QVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNE 534

Query: 200 ------TMYC---------VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
                 TM+C         ++  L     L A +  + IH  A+  G+D  +IV   LI 
Sbjct: 535 AMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS 594

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G  +D+RR+FD  +   +   WN ++ GYAQ G     ++++  +E  G  P+E 
Sbjct: 595 MYFKCG-CADSRRIFDL-MEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEV 652

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F+ +L A  +AGL  E  K+ + M   Y L P  EHY C++  +GR G ++ AE+    
Sbjct: 653 TFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYD 712

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           MP EPD  +W ALL    IH  A++  +  ++L  I P +   YV+++N+ S +G W EV
Sbjct: 713 MPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEV 772

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
           AEVRK+MK + V KE G SW ++K K+H F+ GD+ HE+ E+I   L EL    +  GYV
Sbjct: 773 AEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYV 832

Query: 485 PVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKY 544
           P  + +LH++ + +K  +L YHSEKLA+A+ L++  P+G  ++I+KNLRIC DCH   K+
Sbjct: 833 PDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLA-TPKGMPIQILKNLRICGDCHTFIKF 891

Query: 545 ISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +S V +R+I +RD NR+H F NGSC+C D W
Sbjct: 892 VSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/372 (19%), Positives = 152/372 (40%), Gaps = 60/372 (16%)

Query: 55  LFNHIPSPNIVSWTALISA--HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112
           +F+ +P  +I++W ++ISA  H+  P +       +         N RT A L      L
Sbjct: 56  VFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGG------NMRTGAILLSGYGRL 109

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
                       +     L       +A++  Y +      A+++FD +  RDV  + +M
Sbjct: 110 GRVLEARRVFDGM-----LERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSM 164

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG-------------------------- 206
           + G+  + ++VD+ ++F  M   ++ S    +SG                          
Sbjct: 165 LTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQ 224

Query: 207 --------ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                   A++    L  +E  RV+   A+ +G +R+V++GT +++ Y +   V D    
Sbjct: 225 SNFASALSAVKGLGNLDVLESLRVL---ALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E++   N   W+ M+A  +  G     + ++    ++  A       A++T L   G 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRT----ALITGLAQCGR 337

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             ++    E++      EP +  +  LI+   + G + +A+ +   MPF  +   W  ++
Sbjct: 338 IDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMI 391

Query: 379 SFSAIHGKADMA 390
           +  A +G+++ A
Sbjct: 392 AGYAQNGRSEEA 403



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 49/213 (23%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           SA +    R      A++VFD +  RD++ + +MI                         
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMI------------------------- 72

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
            + YC +G   AA +L           +  +SG   N+  G  L+ GYG+ G V +ARRV
Sbjct: 73  -SAYCHNGMPDAARDL-----------YDAISG--GNMRTGAILLSGYGRLGRVLEARRV 118

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD  L   N++AWNAM++ Y Q GD +    LF  +  R    D  S+ ++LT  C++  
Sbjct: 119 FDGMLE-RNTVAWNAMISCYVQNGDITMARRLFDAMPSR----DVSSWNSMLTGYCHSLQ 173

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             ++    E+M      E  L  +T +IS  GR
Sbjct: 174 MVDARNLFEKMP-----ERNLVSWTVMISGYGR 201



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 130/321 (40%), Gaps = 48/321 (14%)

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV---------------------- 174
           C +AL+   ++    D+A+ +F++I E  VV + A+I                       
Sbjct: 324 CRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRN 383

Query: 175 ---------GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
                    G+AQN R  ++L +  ++  S +  ++  ++    A + + A+E    +H 
Sbjct: 384 TISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS 443

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
            AV  G   N      LI  YGK   +  AR+VF   +   + ++WN+ +A   Q     
Sbjct: 444 LAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSR-MVTKDIVSWNSFLAALVQNDLLD 502

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
                F  +  R    D+ S+  +++A  +A  + E+    + M   ++L P     T L
Sbjct: 503 EARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTIL 557

Query: 346 ISAMGRAGRLEDAERI---AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
           +   G  G  +  ++I   A+ +  + +  V  AL+S     G AD      +R+ D+  
Sbjct: 558 LGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-----SRRIFDLME 612

Query: 403 YDDS---AYVIVANVLSGVGR 420
             D      +I      G+GR
Sbjct: 613 ERDIFTWNTIITGYAQHGLGR 633


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 313/561 (55%), Gaps = 14/561 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H+  +K+    D  +  +L++ Y K +    +L++F+ IP  N+VSWTA+I+ + +S  
Sbjct: 136 IHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGH 195

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 +  +   +   P+  +L  +   CA L      G  +        +    F  +
Sbjct: 196 FREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC-TSGEWIDRYISDSGMGRNVFVAT 254

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +L+  Y +  + + A  +F  + E+D+V +  MI G+A N     +L +F  M+S ++  
Sbjct: 255 SLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKP 314

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN-----VIVGTGLIDGYGKAGIVSD 254
             Y + G L A A L A++      G    S +DRN      ++GT LID Y K G V+ 
Sbjct: 315 DCYTMVGVLSACATLGALDL-----GIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQ 369

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F   +   + + WNAMM G +  G    V  LF L+E  G  PDE +F+ +L    
Sbjct: 370 AWEIFTA-MKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCT 428

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           + G   E  ++   MK  + L P +EHY C++  +GRAG L +A ++   MP +P+A VW
Sbjct: 429 HGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVW 488

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    +H    +A ++ K+LI++ P++   YV ++N+ SG  RW+E  ++R  MK++
Sbjct: 489 GALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQ 548

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           +++K    SWIE+ G VH FL GD+ H  +E IY KL EL  E + +G+VP  + +L ++
Sbjct: 549 QIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDI 608

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + EK   L YHSEKLA+AFGL++ +P    +R+VKNLR+C DCH++ K IS++ +REI+
Sbjct: 609 EEEEKEHFLGYHSEKLAVAFGLIA-SPPNHVIRVVKNLRVCGDCHDAIKLISKITKREII 667

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD NR+H F++GSC+C D W
Sbjct: 668 IRDTNRFHTFIDGSCSCRDYW 688



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 170/374 (45%), Gaps = 17/374 (4%)

Query: 21  VHARALKSSQADRSIYNNLIT----NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +HAR L+      +   NLI     ++  +N   YS  +F+ +  PNI  W  +I    +
Sbjct: 35  IHARLLRLHLDQDNYLLNLILCCALDFGSTN---YSKLVFSQVKEPNIFLWNTMIRGLVS 91

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                 +++++ SM       FLPN  T+  + K CA      L GL +HSL +K     
Sbjct: 92  KDCFDDAIHLYGSMRGG---GFLPNNFTIPFVLKACARKLDVRL-GLKIHSLLVKAGYDH 147

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F  ++L+  Y +  + D+A KVFD+I +++VV + A+I G+  +    +++  F  + 
Sbjct: 148 DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              +    + +   L A A L        I  +   SG+ RNV V T L+D Y K G + 
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLE 267

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A  +F   +   + ++W+ M+ GYA  G     L+LF  ++     PD Y+ + VL+A 
Sbjct: 268 RANLIFSA-MPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G A +   W   +  R +        T LI    + G +  A  I  AM  + D  V
Sbjct: 327 ATLG-ALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK-KKDRVV 384

Query: 374 WRALLSFSAIHGKA 387
           W A++   +++G A
Sbjct: 385 WNAMMVGLSMNGHA 398


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 203/562 (36%), Positives = 319/562 (56%), Gaps = 11/562 (1%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-N 76
           R +H R L S    D  +   L+  Y+   L+ ++ RLF+ +P  N+  W  LI A++ +
Sbjct: 82  RQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARD 141

Query: 77  SP--LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            P  +++ ++  M+ +      P+  T     K   +       G  +H   L     + 
Sbjct: 142 GPHEVAIQLYRGMVDY---GVEPDNFTYPLALKA-CAALLDLETGREVHERVLGTHWGED 197

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  + LV  Y++    D+A+ VFD IR RD V + +MI  + QN R +++LS+  DM +
Sbjct: 198 MFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAA 257

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + VG T+  +   + AAA+ AA+ + R +HG     G DR   + T L+D Y K+G V  
Sbjct: 258 NGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQV 317

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTAL 313
           AR +F E L     ++WNAM+ GY   G     L+LF+ + +     PD  +F+ VL+A 
Sbjct: 318 ARVLF-EQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSAC 376

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            + G+  E++++   M   Y ++P ++H+TCL+  +G AGR E+A  +   MP +PD+ +
Sbjct: 377 NHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGI 436

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL+   IH   ++     ++LI++ P D   YV+++N+ +  G+W++ A VRK+M +
Sbjct: 437 WGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTN 496

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R ++K  G SWIE+KGK H FL GD  H R+ +IY +L  L       GY+P    + H+
Sbjct: 497 RGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHD 556

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           VGD EKR  +  HSE+LA+AFGL+S  P G  L + KNLR+C DCH   K IS++V+REI
Sbjct: 557 VGDDEKRNMMRSHSERLAIAFGLIS-TPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREI 615

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RDVNRYH F+NG C+C D W
Sbjct: 616 IIRDVNRYHHFVNGECSCKDYW 637



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 148/339 (43%), Gaps = 18/339 (5%)

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
            S+ ++C + S +   G  LH   L   L       + LV  Y+      +A+++FD + 
Sbjct: 66  TSVLQSCVA-SRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +R+V  +  +I  +A++     ++ ++  M    V    +    AL+A A L  +E  R 
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +H   + +    ++ V  GL+D Y K G V DAR VFD  + V +S+ WN+M+A Y Q G
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDR-IRVRDSVVWNSMIAAYGQNG 243

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA-----GLAGESEKWIERMKVRYKLEP 337
                L L   +   G  P   + ++ ++A  +A     G       W      + KL+ 
Sbjct: 244 RPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLK- 302

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
                T L+    ++G ++ A R+      + +   W A++    +HG  D A K+  ++
Sbjct: 303 -----TSLVDMYAKSGWVQVA-RVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKM 356

Query: 398 ---IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
                + P D+  +V V +  +  G   E  E   +M D
Sbjct: 357 RVEAQVTP-DNITFVGVLSACNHGGMVKEAKEFFGLMVD 394


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 182/541 (33%), Positives = 304/541 (56%), Gaps = 37/541 (6%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           I+N L   Y+K   +  +  LF+ +   N+VSW  +IS ++ +             P   
Sbjct: 192 IWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG-----------QP--- 237

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
                       + C  L         LH + L   + D+    S ++  Y +    D A
Sbjct: 238 ------------EKCIGL---------LHQMRLSGHMPDQ-VTMSTIIAAYCQCGRVDEA 275

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           ++VF E +E+D+VC+ AM+VG+A+N R  D+L +F +M    +    Y +S  + + A+L
Sbjct: 276 RRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKL 335

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           A++   + +HG ++++GL+ N++V + LID Y K G + DAR VF+  +   N ++WNAM
Sbjct: 336 ASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNL-MPTRNVVSWNAM 394

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + G AQ G     LELF  +  + F PD  +F+ +L+A  +     + +++ + +  ++ 
Sbjct: 395 IVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHG 454

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           + P L+HY C+++ +GR GR+E A  +   M  +PD  +W  LLS  +  G    A    
Sbjct: 455 MTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAA 514

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           + L +++P     Y++++N+ + +GRW +VA VR +MK + V+K  G SWIE+  +VH F
Sbjct: 515 RHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRF 574

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
            + DR H  +EDIY KL  L+ + +  G+ P  + +LH+VG+ EK +++ +HSEKLALAF
Sbjct: 575 TSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAF 634

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+        +RI+KN+RIC DCHE  K+ SR++ R+I++RD NR+H F  G C+C D 
Sbjct: 635 GLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDN 694

Query: 575 W 575
           W
Sbjct: 695 W 695



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 159/362 (43%), Gaps = 38/362 (10%)

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           L  PT SFL NQ  L  L+     L  A        +L  K+   D  F  +AL+  Y++
Sbjct: 52  LFQPTDSFLHNQ--LLHLYAKFGKLRDA-------QNLFDKMLKRDX-FSWNALLSAYAK 101

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             S  N K  FD +  RD V Y   I GF+ NS   +SL +F  M+      T Y +   
Sbjct: 102 SGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSI 161

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A+A+L  +   + IHG  +V     NV +   L D Y K G +  AR +FD  L+  N
Sbjct: 162 LNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFD-CLTKKN 220

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++WN M++GYA+ G     + L H + + G  PD+ +   ++ A C  G   E+ +   
Sbjct: 221 LVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS 280

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM---PFEPDAAVWRALLSF---- 380
             K     E  +  +T ++    + GR EDA  +   M     EPD+    +++S     
Sbjct: 281 EFK-----EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKL 335

Query: 381 ------SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
                  A+HGK+ +A      L+       SA +   ++ S  G  D+   V  +M  R
Sbjct: 336 ASLHHGQAVHGKSILAGLNNNLLV------SSALI---DMYSKCGFIDDARSVFNLMPTR 386

Query: 435 RV 436
            V
Sbjct: 387 NV 388



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 153/389 (39%), Gaps = 76/389 (19%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS------------- 77
            D  ++N L+  Y+K   L  +  LF+ +   +  SW AL+SA++ S             
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRM 115

Query: 78  PL---------------------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
           P                      SL +F  M R     F P + T+ S+    A L    
Sbjct: 116 PFRDSVSYNTTIAGFSGNSCPQESLELFKRMQRE---GFEPTEYTIVSILNASAQLLD-L 171

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
            +G  +H   +  +     F  +AL   Y++    + A+ +FD + ++++V +  MI G+
Sbjct: 172 RYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGY 231

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           A+N +    + +   MR                                   +SG   + 
Sbjct: 232 AKNGQPEKCIGLLHQMR-----------------------------------LSGHMPDQ 256

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
           +  + +I  Y + G V +ARRVF E     + + W AMM GYA+ G +   L LF+ + +
Sbjct: 257 VTMSTIIAAYCQCGRVDEARRVFSE-FKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLL 315

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
               PD Y+  +V+++ C    +    + +    +   L   L   + LI    + G ++
Sbjct: 316 EHIEPDSYTLSSVVSS-CAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFID 374

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           DA  +   MP   +   W A++   A +G
Sbjct: 375 DARSVFNLMPTR-NVVSWNAMIVGCAQNG 402



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 120/269 (44%), Gaps = 10/269 (3%)

Query: 20  IVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           ++H   L     D+   + +I  Y +   +  + R+F+     +IV WTA++  ++ +  
Sbjct: 243 LLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGR 302

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
             +  L           P+  TL+S+  +CA L+ +   G ++H  S+   L++     S
Sbjct: 303 EEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLA-SLHHGQAVHGKSILAGLNNNLLVSS 361

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  YS+    D+A+ VF+ +  R+VV + AMIVG AQN    D+L +F +M       
Sbjct: 362 ALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKP 421

Query: 200 TMYCVSGALRAAAELAAMEQCR-----VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                 G L A      +EQ +     + + H +   LD        +++  G+ G +  
Sbjct: 422 DNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYAC----MVNLLGRTGRIEQ 477

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           A  +        + + W+ +++  + +GD
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGD 506


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/561 (35%), Positives = 322/561 (57%), Gaps = 16/561 (2%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS-- 77
           +H+  ++S  A D  +   L+  Y+KS  +  S ++FN +   N++SWTALIS +  S  
Sbjct: 270 LHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQ 329

Query: 78  -PLSLNIFLSMLR-HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              ++ +F +ML  H T    PN  T +S+ K CASL   F  G  LH  ++KL L    
Sbjct: 330 EQEAIKLFCNMLHGHVT----PNCFTFSSVLKACASLPD-FGIGKQLHGQTIKLGLSTIN 384

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA-DMRS 194
             G++L++ Y+R  + + A+K F+ + E++++ Y         N++ +DS   F  ++  
Sbjct: 385 CVGNSLINMYARSGTMECARKAFNILFEKNLISYNT---AADANAKALDSDESFNHEVEH 441

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + VG++ +  +  L  AA +  + +   IH   V SG   N+ +   LI  Y K G    
Sbjct: 442 TGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEA 501

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A +VF++ +   N I W ++++G+A+ G  +  LELF+ +   G  P+E +++AVL+A  
Sbjct: 502 ALQVFND-MGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACS 560

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           + GL  E+ K    M   + + P +EHY C++  +GR+G L +A     +MPF+ DA VW
Sbjct: 561 HVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVW 620

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           R  L    +H    +     K++++  P+D + Y++++N+ +  GRWD+VA +RK MK +
Sbjct: 621 RTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQK 680

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           ++ KE G SWIEV  +VH F  GD  H +   IY +L EL  + + LGY+P  D +LH+V
Sbjct: 681 KLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDV 740

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            D +K + L+ HSEK+A+A+ L+S  P+ K +R+ KNLR+C DCH + KYIS V  REIV
Sbjct: 741 EDEQKEQYLFQHSEKIAVAYALIS-TPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIV 799

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+H   +G C+C D W
Sbjct: 800 VRDANRFHHIKDGKCSCNDYW 820



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 182/364 (50%), Gaps = 20/364 (5%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS 75
           +++H + + S    D  + N+LIT YSK      +L +F ++     ++VSW+A+IS  +
Sbjct: 59  KLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFA 118

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           N+ +   +L  FL ML+       PN+    +L ++C++    F  GL++ +  LK    
Sbjct: 119 NNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSN-PLFFTTGLAIFAFLLKTGYF 177

Query: 133 DKPFC-GSALVHFYSR-FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           D   C G AL+  +++      +A+ VFD+++ +++V +  MI  ++Q   L D++ +F 
Sbjct: 178 DSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFC 237

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            +  S+     + ++  L A  EL      + +H   + SGL  +V VG  L+D Y K+ 
Sbjct: 238 RLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSA 297

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V ++R++F+  L   N ++W A+++GY Q   +   ++LF  +      P+ ++F +VL
Sbjct: 298 AVENSRKIFNTMLH-HNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVL 356

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMP 366
            A      A   +  I +      ++ GL    C    LI+   R+G +E A R A  + 
Sbjct: 357 KA-----CASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECA-RKAFNIL 410

Query: 367 FEPD 370
           FE +
Sbjct: 411 FEKN 414



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 182/390 (46%), Gaps = 14/390 (3%)

Query: 39  LITNYSKSNLLSYSLRL-FNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLS 94
           LI  ++K  L   S R+ F+ +   N+V+WT +I+ +S   L   ++++F  +L      
Sbjct: 187 LIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLL---VSE 243

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
           + P++ TL SL   C  L   F  G  LHS  ++  L    F G  LV  Y++  + +N+
Sbjct: 244 YTPDKFTLTSLLSACVELEF-FSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENS 302

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           +K+F+ +   +V+ + A+I G+ Q+ +  +++ +F +M    V    +  S  L+A A L
Sbjct: 303 RKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASL 362

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
                 + +HG  +  GL     VG  LI+ Y ++G +  AR+ F+  L   N I++N  
Sbjct: 363 PDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNI-LFEKNLISYNTA 421

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
               A+  D        H +E  G     +++  +L+     G   + E+ I  + V+  
Sbjct: 422 ADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQ-IHALIVKSG 478

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
               L     LIS   + G  E A ++   M +  +   W +++S  A HG A  A ++ 
Sbjct: 479 FGTNLCINNALISMYSKCGNKEAALQVFNDMGYR-NVITWTSIISGFAKHGFATKALELF 537

Query: 395 KRLIDIN-PYDDSAYVIVANVLSGVGRWDE 423
             +++I    ++  Y+ V +  S VG  DE
Sbjct: 538 YEMLEIGVKPNEVTYIAVLSACSHVGLIDE 567



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 113/251 (45%), Gaps = 16/251 (6%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           ++L+  YS+    +NA  +F  +   +RD+V + A+I  FA NS    +L  F  M    
Sbjct: 78  NSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCS 137

Query: 197 ---VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGI- 251
              +    YC +  LR+ +          I    + +G  D +V VG  LID + K G+ 
Sbjct: 138 RNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLD 197

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  AR VFD+ +   N + W  M+  Y+Q G     ++LF  L +  + PD+++  ++L+
Sbjct: 198 IQSARMVFDK-MQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLS 256

Query: 312 ALCNA---GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           A        L  +   W+ R  +   +  G      L+    ++  +E++ +I   M   
Sbjct: 257 ACVELEFFSLGKQLHSWVIRSGLASDVFVGCT----LVDMYAKSAAVENSRKIFNTM-LH 311

Query: 369 PDAAVWRALLS 379
            +   W AL+S
Sbjct: 312 HNVMSWTALIS 322


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 182/541 (33%), Positives = 304/541 (56%), Gaps = 37/541 (6%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           I+N L   Y+K   +  +  LF+ +   N+VSW  +IS ++ +             P   
Sbjct: 192 IWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG-----------QP--- 237

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
                       + C  L         LH + L   + D+    S ++  Y +    D A
Sbjct: 238 ------------EKCIGL---------LHQMRLSGHMPDQ-VTMSTIIAAYCQCGRVDEA 275

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           ++VF E +E+D+VC+ AM+VG+A+N R  D+L +F +M    +    Y +S  + + A+L
Sbjct: 276 RRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKL 335

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           A++   + +HG ++++GL+ N++V + LID Y K G + DAR VF+  +   N ++WNAM
Sbjct: 336 ASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNL-MPTRNVVSWNAM 394

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + G AQ G     LELF  +  + F PD  +F+ +L+A  +     + +++ + +  ++ 
Sbjct: 395 IVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHG 454

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           + P L+HY C+++ +GR GR+E A  +   M  +PD  +W  LLS  +  G    A    
Sbjct: 455 MTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAA 514

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           + L +++P     Y++++N+ + +GRW +VA VR +MK + V+K  G SWIE+  +VH F
Sbjct: 515 RHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRF 574

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
            + DR H  +EDIY KL  L+ + +  G+ P  + +LH+VG+ EK +++ +HSEKLALAF
Sbjct: 575 TSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAF 634

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+        +RI+KN+RIC DCHE  K+ SR++ R+I++RD NR+H F  G C+C D 
Sbjct: 635 GLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDN 694

Query: 575 W 575
           W
Sbjct: 695 W 695



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           L  PT SFL NQ  L  L+     L  A     +L    LK  +    F  +AL+  Y++
Sbjct: 52  LFQPTDSFLHNQ--LLHLYAKFGKLRDA----QNLFDKMLKRDI----FSWNALLSAYAK 101

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             S  N K  FD +  RD V Y   I GF+ NS   +SL +F  M+      T Y +   
Sbjct: 102 SGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSI 161

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A+A+L+ +   + IHG  +V     NV +   L D Y K G +  AR +FD  L+  N
Sbjct: 162 LNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFD-CLTKKN 220

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++WN M++GYA+ G     + L H + + G  PD+ +   ++ A C  G   E+ +   
Sbjct: 221 LVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS 280

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM---PFEPDAAVWRALLSF---- 380
             K     E  +  +T ++    + GR EDA  +   M     EPD+    +++S     
Sbjct: 281 EFK-----EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKL 335

Query: 381 ------SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
                  A+HGK+ +A      L+       SA +   ++ S  G  D+   V  +M  R
Sbjct: 336 ASLHHGQAVHGKSILAGLNNNLLV------SSALI---DMYSKCGFIDDARSVFNLMPTR 386

Query: 435 RV 436
            V
Sbjct: 387 NV 388



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 155/389 (39%), Gaps = 76/389 (19%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS------------- 77
            D  ++N L+  Y+K   L  +  LF+ +   +I SW AL+SA++ S             
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRM 115

Query: 78  PL---------------------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
           P                      SL +F  M R     F P + T+ S+    A LS   
Sbjct: 116 PFRDSVSYNTTIAGFSGNSCPQESLELFKRMQRE---GFEPTEYTIVSILNASAQLSD-L 171

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
            +G  +H   +  +     F  +AL   Y++    + A+ +FD + ++++V +  MI G+
Sbjct: 172 RYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGY 231

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           A+N +    + +   MR                                   +SG   + 
Sbjct: 232 AKNGQPEKCIGLLHQMR-----------------------------------LSGHMPDQ 256

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
           +  + +I  Y + G V +ARRVF E     + + W AMM GYA+ G +   L LF+ + +
Sbjct: 257 VTMSTIIAAYCQCGRVDEARRVFSE-FKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLL 315

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
               PD Y+  +V+++ C    +    + +    +   L   L   + LI    + G ++
Sbjct: 316 EHIEPDSYTLSSVVSS-CAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFID 374

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           DA  +   MP   +   W A++   A +G
Sbjct: 375 DARSVFNLMPTR-NVVSWNAMIVGCAQNG 402



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 120/269 (44%), Gaps = 10/269 (3%)

Query: 20  IVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           ++H   L     D+   + +I  Y +   +  + R+F+     +IV WTA++  ++ +  
Sbjct: 243 LLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGR 302

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
             +  L           P+  TL+S+  +CA L+ +   G ++H  S+   L++     S
Sbjct: 303 EEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLA-SLHHGQAVHGKSILAGLNNNLLVSS 361

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  YS+    D+A+ VF+ +  R+VV + AMIVG AQN    D+L +F +M       
Sbjct: 362 ALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKP 421

Query: 200 TMYCVSGALRAAAELAAMEQCR-----VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                 G L A      +EQ +     + + H +   LD        +++  G+ G +  
Sbjct: 422 DNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYAC----MVNLLGRTGRIEQ 477

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           A  +        + + W+ +++  + +GD
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGD 506


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 313/561 (55%), Gaps = 14/561 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H+  +K+    D  +  +L++ Y K +    +L++F+ IP  N+VSWTA+I+ + +S  
Sbjct: 136 IHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGH 195

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 +  +   +   P+  +L  +   CA L      G  +        +    F  +
Sbjct: 196 FREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC-TSGEWIDRYISDSGMGRNVFVAT 254

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +L+  Y +  + + A  +F  + E+D+V +  MI G+A N     +L +F  M+S ++  
Sbjct: 255 SLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKP 314

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN-----VIVGTGLIDGYGKAGIVSD 254
             Y + G L A A L A++      G    S +DRN      ++GT LID Y K G V+ 
Sbjct: 315 DCYTMVGVLSACATLGALDL-----GIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQ 369

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F   +   + + WNAMM G +  G    V  LF L+E  G  PDE +F+ +L    
Sbjct: 370 AWEIFTA-MKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCT 428

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           + G   E  ++   MK  + L P +EHY C++  +GRAG L +A ++   MP +P+A VW
Sbjct: 429 HGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVW 488

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    +H    +A ++ K+LI++ P++   YV ++N+ SG  RW+E  ++R  MK++
Sbjct: 489 GALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQ 548

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           +++K    SWIE+ G VH FL GD+ H  +E IY KL EL  E + +G+VP  + +L ++
Sbjct: 549 QIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDI 608

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + EK   L YHSEKLA+AFGL++ +P    +R+VKNLR+C DCH++ K IS++ +REI+
Sbjct: 609 EEEEKEHFLGYHSEKLAVAFGLIA-SPPNHVIRVVKNLRVCGDCHDAIKLISKITKREII 667

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD NR+H F++GSC+C D W
Sbjct: 668 IRDTNRFHTFIDGSCSCRDYW 688



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 169/374 (45%), Gaps = 17/374 (4%)

Query: 21  VHARALKSSQADRSIYNNLIT----NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +HAR L+      +   NLI     ++  +N   YS  +F+ +  PNI  W  +I    +
Sbjct: 35  IHARLLRLHLDQDNYLLNLILCCALDFGSTN---YSKLVFSQVKEPNIFLWNTMIRGLVS 91

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                 +++++ SM       FLPN  T+  + K CA      L GL +HSL +K     
Sbjct: 92  KDCFDDAIHLYGSMRGG---GFLPNNFTIPFVLKACARKLDVRL-GLKIHSLLVKAGYDH 147

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F  ++L+  Y +  + D+A KVFD+I +++VV + A+I G+  +    +++  F  + 
Sbjct: 148 DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              +    + +   L A A L        I  +   SG+ RNV V T L+D Y K G + 
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLE 267

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A  +F   +   + ++W+ M+ GYA  G     L+LF  ++     PD Y+ + VL+A 
Sbjct: 268 RANLIFSA-MPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G A +   W   +  R +        T LI    + G +  A  I  AM    D  V
Sbjct: 327 ATLG-ALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK-RKDRVV 384

Query: 374 WRALLSFSAIHGKA 387
           W A++   +++G A
Sbjct: 385 WNAMMVGLSMNGHA 398


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 213/563 (37%), Positives = 311/563 (55%), Gaps = 29/563 (5%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPLS---LNIFLSML 88
           +N ++  YS+S     +  LF ++   NI    V+WTA+I+ +S    S   LN+F  M+
Sbjct: 296 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 355

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK--LSLHDKPFCG-------- 138
              +L   PN  T+ S+   CASL  AF  G+ +H+ SLK  L   D  F G        
Sbjct: 356 FSGSL---PNCVTIISVLSACASLG-AFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 139 SALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           +AL+  YS+ RS   A+ +FD+I   ER+VV +  MI G AQ     D+L +F +M S  
Sbjct: 412 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 471

Query: 197 VG--STMYCVSGALRAAAELAAMEQCRVIHGHAVVS-GLDRNV-IVGTGLIDGYGKAGIV 252
            G     Y +S  L A A LAA+   + IH + +     D +   V   LI+ Y K G V
Sbjct: 472 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDV 531

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD ++S  ++I+W +MM GY   G  S  L++F  +   GF PD+ +FL VL A
Sbjct: 532 DTARHVFD-SMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 590

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  +   + + M   Y L P  EHY   I  + R GRL+ A +    MP EP A 
Sbjct: 591 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAV 650

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALLS   +H   ++A     +L+++N  +D +Y +++N+ +  GRW +VA +R +MK
Sbjct: 651 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMK 710

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
              ++K  G SW++ +     F  GDR H  +  IY  L  L++  + +GYVP  +  LH
Sbjct: 711 KSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALH 770

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V + EK   L  HSEKLALA+GL++  P G  +RI KNLR+C DCH +F YIS++V+ E
Sbjct: 771 DVDEEEKNNLLVEHSEKLALAYGLLTTFP-GCPIRITKNLRVCGDCHSAFTYISKIVDHE 829

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD +R+H F NGSC+CG  W
Sbjct: 830 IVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 202/457 (44%), Gaps = 79/457 (17%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAH---SNSPLSLNIF--LS 86
           I N L+  YS+   L  +  +F+ I      +++SW +++SAH   SN+  +L++F  ++
Sbjct: 154 ICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT 213

Query: 87  MLRH--PTLSFLPNQRT----LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
           ++ H  PT     N+R+    + ++   C SL  A      +H  +++       F G+A
Sbjct: 214 LIVHEKPT-----NERSDIISIVNILPACGSLK-AVPQTKEVHGNAIRNGTFLDVFVGNA 267

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV--- 197
           L+  Y++    +NA KVF+ +  +DVV + AM+ G++Q+     +  +F +MR  ++   
Sbjct: 268 LIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLD 327

Query: 198 ------------------------------GSTMYCVS--GALRAAAELAAMEQCRVIHG 225
                                         GS   CV+    L A A L A  Q   IH 
Sbjct: 328 MVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHA 387

Query: 226 HAV----------VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAM 274
           +++            G D +++V   LID Y K      AR +FD+  L   N + W  M
Sbjct: 388 YSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVM 447

Query: 275 MAGYAQQGDQSTVLELF--HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           + G+AQ GD +  L+LF   + E  G AP+ Y+   +L A C    A    K I    +R
Sbjct: 448 IGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA-CAHLAAIRIGKQIHAYVLR 506

Query: 333 YKLEPGLEHYT--CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA--- 387
           +       ++   CLI+   + G ++ A  +  +M  +  A  W ++++   +HG+    
Sbjct: 507 HHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGRGSEA 565

Query: 388 -DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            D+  KM  R     P DD  +++V    S  G  D+
Sbjct: 566 LDIFDKM--RKAGFVP-DDITFLVVLYACSHCGMVDQ 599



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 146/310 (47%), Gaps = 19/310 (6%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHI-PSPNIVSWTALISAHSNS---PLSLNIFLSML 88
           RS+   ++ +Y       Y+L +   + PSP  V W  LI  H        ++N+   ML
Sbjct: 51  RSLGTGVVASYLACGATDYALLVLERVTPSP-AVWWNLLIREHIKQGRLDSAINVSCRML 109

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R  T     +  TL  + K C  L  ++  G + H L          F  +ALV  YSR 
Sbjct: 110 RAGTRL---DHFTLPHVLKACGELP-SYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 165

Query: 149 RSPDNAKKVFDEIRER---DVVCYGAMIVGFAQNSRLVDSLSVFADM------RSSDVGS 199
            S + A  +FDEI +R   DV+ + +++    ++S    +L +F+ M      + ++  S
Sbjct: 166 GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 225

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            +  +   L A   L A+ Q + +HG+A+ +G   +V VG  LID Y K G++ +A +VF
Sbjct: 226 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 285

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +  +   + ++WNAM+AGY+Q G+     ELF  +       D  ++ AV+      G +
Sbjct: 286 NM-MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCS 344

Query: 320 GESEKWIERM 329
            E+     +M
Sbjct: 345 HEALNVFRQM 354



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS---NSPLSLNIFLS 86
           D  +YN LI  YSK      +  +F+ IP    N+V+WT +I  H+   +S  +L +F+ 
Sbjct: 407 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 466

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--FCGSALVHF 144
           M+  P     PN  T++ +   CA L+ A   G  +H+  L+   +D    F  + L++ 
Sbjct: 467 MISEP-YGVAPNAYTISCILMACAHLA-AIRIGKQIHAYVLRHHQYDSSAYFVANCLINM 524

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           YS+    D A+ VFD + ++  + + +M+ G+  + R  ++L +F  MR +
Sbjct: 525 YSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA 575



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 16/163 (9%)

Query: 21  VHARALKSSQADRSIY---NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           +HA  L+  Q D S Y   N LI  YSK   +  +  +F+ +   + +SWT++++    H
Sbjct: 500 IHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH 559

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF--GLS-LHSLSLKLSL 131
                +L+IF  M +     F+P+  T   +   C   SH  +   GLS   S+S    L
Sbjct: 560 GRGSEALDIFDKMRK---AGFVPDDITFLVVLYAC---SHCGMVDQGLSYFDSMSADYGL 613

Query: 132 HDKPFCGSALVHFYSRFRSPDNA-KKVFDEIRERDVVCYGAMI 173
             +    +  +   +RF   D A K V D   E   V + A++
Sbjct: 614 TPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALL 656


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 213/563 (37%), Positives = 311/563 (55%), Gaps = 29/563 (5%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPLS---LNIFLSML 88
           +N ++  YS+S     +  LF ++   NI    V+WTA+I+ +S    S   LN+F  M+
Sbjct: 189 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 248

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK--LSLHDKPFCG-------- 138
              +L   PN  T+ S+   CASL  AF  G+ +H+ SLK  L   D  F G        
Sbjct: 249 FSGSL---PNCVTIISVLSACASLG-AFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 304

Query: 139 SALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           +AL+  YS+ RS   A+ +FD+I   ER+VV +  MI G AQ     D+L +F +M S  
Sbjct: 305 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 364

Query: 197 VG--STMYCVSGALRAAAELAAMEQCRVIHGHAVVS-GLDRNV-IVGTGLIDGYGKAGIV 252
            G     Y +S  L A A LAA+   + IH + +     D +   V   LI+ Y K G V
Sbjct: 365 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDV 424

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD ++S  ++I+W +MM GY   G  S  L++F  +   GF PD+ +FL VL A
Sbjct: 425 DTARHVFD-SMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 483

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  +   + + M   Y L P  EHY   I  + R GRL+ A +    MP EP A 
Sbjct: 484 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAV 543

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALLS   +H   ++A     +L+++N  +D +Y +++N+ +  GRW +VA +R +MK
Sbjct: 544 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMK 603

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
              ++K  G SW++ +     F  GDR H  +  IY  L  L++  + +GYVP  +  LH
Sbjct: 604 KSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALH 663

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V + EK   L  HSEKLALA+GL++  P G  +RI KNLR+C DCH +F YIS++V+ E
Sbjct: 664 DVDEEEKNNLLVEHSEKLALAYGLLTTFP-GCPIRITKNLRVCGDCHSAFTYISKIVDHE 722

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD +R+H F NGSC+CG  W
Sbjct: 723 IVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 202/457 (44%), Gaps = 79/457 (17%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAH---SNSPLSLNIF--LS 86
           I N L+  YS+   L  +  +F+ I      +++SW +++SAH   SN+  +L++F  ++
Sbjct: 47  ICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMT 106

Query: 87  MLRH--PTLSFLPNQRT----LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
           ++ H  PT     N+R+    + ++   C SL  A      +H  +++       F G+A
Sbjct: 107 LIVHEKPT-----NERSDIISIVNILPACGSLK-AVPQTKEVHGNAIRNGTFLDVFVGNA 160

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV--- 197
           L+  Y++    +NA KVF+ +  +DVV + AM+ G++Q+     +  +F +MR  ++   
Sbjct: 161 LIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLD 220

Query: 198 ------------------------------GSTMYCVS--GALRAAAELAAMEQCRVIHG 225
                                         GS   CV+    L A A L A  Q   IH 
Sbjct: 221 MVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHA 280

Query: 226 HAV----------VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAM 274
           +++            G D +++V   LID Y K      AR +FD+  L   N + W  M
Sbjct: 281 YSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVM 340

Query: 275 MAGYAQQGDQSTVLELF--HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           + G+AQ GD +  L+LF   + E  G AP+ Y+   +L A C    A    K I    +R
Sbjct: 341 IGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA-CAHLAAIRIGKQIHAYVLR 399

Query: 333 YKLEPGLEHYT--CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA--- 387
           +       ++   CLI+   + G ++ A  +  +M  +  A  W ++++   +HG+    
Sbjct: 400 HHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGRGSEA 458

Query: 388 -DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            D+  KM  R     P DD  +++V    S  G  D+
Sbjct: 459 LDIFDKM--RKAGFVP-DDITFLVVLYACSHCGMVDQ 492



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 11/238 (4%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           TL  + K C  L  ++  G + H L          F  +ALV  YSR  S + A  +FDE
Sbjct: 12  TLPHVLKACGELP-SYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE 70

Query: 161 IRER---DVVCYGAMIVGFAQNSRLVDSLSVFADM------RSSDVGSTMYCVSGALRAA 211
           I +R   DV+ + +++    ++S    +L +F+ M      + ++  S +  +   L A 
Sbjct: 71  ITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 130

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
             L A+ Q + +HG+A+ +G   +V VG  LID Y K G++ +A +VF+  +   + ++W
Sbjct: 131 GSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM-MEFKDVVSW 189

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           NAM+AGY+Q G+     ELF  +       D  ++ AV+      G + E+     +M
Sbjct: 190 NAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 247



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 9/171 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS---NSPLSLNIFLS 86
           D  +YN LI  YSK      +  +F+ IP    N+V+WT +I  H+   +S  +L +F+ 
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 359

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--FCGSALVHF 144
           M+  P     PN  T++ +   CA L+ A   G  +H+  L+   +D    F  + L++ 
Sbjct: 360 MISEP-YGVAPNAYTISCILMACAHLA-AIRIGKQIHAYVLRHHQYDSSAYFVANCLINM 417

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           YS+    D A+ VFD + ++  + + +M+ G+  + R  ++L +F  MR +
Sbjct: 418 YSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA 468



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 16/163 (9%)

Query: 21  VHARALKSSQADRSIY---NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           +HA  L+  Q D S Y   N LI  YSK   +  +  +F+ +   + +SWT++++    H
Sbjct: 393 IHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH 452

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF--GLS-LHSLSLKLSL 131
                +L+IF  M +     F+P+  T   +   C   SH  +   GLS   S+S    L
Sbjct: 453 GRGSEALDIFDKMRK---AGFVPDDITFLVVLYAC---SHCGMVDQGLSYFDSMSADYGL 506

Query: 132 HDKPFCGSALVHFYSRFRSPDNA-KKVFDEIRERDVVCYGAMI 173
             +    +  +   +RF   D A K V D   E   V + A++
Sbjct: 507 TPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALL 549


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 201/561 (35%), Positives = 316/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + VH   LK++ + D  +   L+  Y++      + R F  +P  +++ W+ +IS  + S
Sbjct: 167 KTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQS 226

Query: 78  PLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             S   L IF  M R   +   PNQ T +S+ +  A +  +     ++H  +LK  L   
Sbjct: 227 GQSEKALEIFCQMRRAFVI---PNQFTFSSVLQASADI-ESLDLSKTIHGHALKAGLSTD 282

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  +AL+  Y++    + + ++F+ + +R+ V +  +IV + Q      +LS+F++M  
Sbjct: 283 VFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLR 342

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V +T    S  LRA A LAA+E    +H     +   ++V VG  LID Y K G + D
Sbjct: 343 YQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKD 402

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR +FD  L + + ++WNA++ GY+  G     +++F+L++     PDE +F+ VL+A  
Sbjct: 403 ARFMFDM-LDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACS 461

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           N G   E +++   MK  Y +EP +EHYTC++  MGR+G L+ A +    +PFEP   +W
Sbjct: 462 NTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIW 521

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           RALL    IH   ++     +R++++ P D++++V+++N+ +   RW  VA VRK MK +
Sbjct: 522 RALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRK 581

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V+KE G SWIE +G VH F   D  H   + I   L  L  +  + GY P  + +L +V
Sbjct: 582 GVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDV 641

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            D EK   LW HSE+LALAFGLV   P G  +RI+KNLRIC DCH   K IS++V R+I+
Sbjct: 642 EDDEKERLLWLHSERLALAFGLVR-MPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDII 700

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD+NR+H F NGSC+C D W
Sbjct: 701 VRDMNRFHHFENGSCSCADYW 721



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 196/418 (46%), Gaps = 10/418 (2%)

Query: 19  RIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-N 76
           RIVH   LK      + I   LI  YS S  +S +  +F+ I S ++VSWT +I++++ N
Sbjct: 66  RIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAEN 125

Query: 77  SPLSLNI-FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              S  + F S +R     F PN  T A + K C  L + F  G ++H   LK +     
Sbjct: 126 DCFSEALEFFSQMR--VAGFKPNNFTFAGVLKACLGLQN-FDAGKTVHCSVLKTNYERDL 182

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           + G  L+  Y+R    D+A + F ++ + DV+ +  MI  FAQ+ +   +L +F  MR +
Sbjct: 183 YVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRA 242

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V    +  S  L+A+A++ +++  + IHGHA+ +GL  +V V   L+  Y K G +  +
Sbjct: 243 FVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQS 302

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             +F E LS  N ++WN ++  Y Q GD    L LF  +        E ++ ++L A C 
Sbjct: 303 MELF-EALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRA-CA 360

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
              A E    +  +  +      +     LI    + G ++DA R    M    D   W 
Sbjct: 361 TLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDA-RFMFDMLDLRDKVSWN 419

Query: 376 ALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           A++   ++HG    A KM   + +     D+  +V V +  S  GR DE  +    MK
Sbjct: 420 AIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMK 477



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 124/258 (48%), Gaps = 2/258 (0%)

Query: 55  LFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSH 114
           +F+ +P  N VS+  LI  ++ S   +  F    R        N     ++ K   S+  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
           A L G  +H   LK+      F G+AL+  YS       A++VFDEI  +D+V +  MI 
Sbjct: 62  AEL-GRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
            +A+N    ++L  F+ MR +      +  +G L+A   L   +  + +H   + +  +R
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           ++ VG GL++ Y + G   DA R F + +   + I W+ M++ +AQ G     LE+F  +
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGD-MPKNDVIPWSFMISRFAQSGQSEKALEIFCQM 239

Query: 295 EMRGFAPDEYSFLAVLTA 312
                 P++++F +VL A
Sbjct: 240 RRAFVIPNQFTFSSVLQA 257


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 306/563 (54%), Gaps = 14/563 (2%)

Query: 22  HARALKSSQADRSIYNNLITN------YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           H +AL      RS  N ++        Y+K   L Y+ ++F+ +   N VSW+A+I  + 
Sbjct: 228 HGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYV 287

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            S     +L +F  M+    +   P   TL S+ + CA L+     G  LH   +KL   
Sbjct: 288 XSDCMKEALELFDQMILKDAMD--PTPVTLGSVLRACAKLTD-LSRGRKLHCYIIKLGXV 344

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                G+ L+  Y++    D+A + FD +  +D V + A++ G  QN     +LS+F  M
Sbjct: 345 LDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMM 404

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           + S +   +  + G L A + LAA++     HG+ +V G   + ++   LID Y K G +
Sbjct: 405 QLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKI 464

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           S AR VF+  +   + ++WNAM+ GY   G     L LFH L   G  PD+ +F+ +L++
Sbjct: 465 SFAREVFNR-MDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++GL  E   W + M   + + P +EH  C++  +GRAG +++A      MPFEPD  
Sbjct: 524 CSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVR 583

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W ALLS   IH   ++  ++ K++  + P     +V+++N+ S  GRWD+ A +R   K
Sbjct: 584 IWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQK 643

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           D  ++K  G SWIE+ G VH F+ GD+ H +   I  KL EL+ E +RLGY      +  
Sbjct: 644 DWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQ 703

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V + EK + L YHSEKLA+AFG+++    G+ + + KNLR+C DCH + K+++ + +RE
Sbjct: 704 DVEEEEKEQILLYHSEKLAIAFGILN-LKAGRPILVTKNLRVCGDCHAAIKFMTVITKRE 762

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I VRD NR+H F NG+C CGD W
Sbjct: 763 ITVRDANRFHHFKNGTCNCGDFW 785



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 189/397 (47%), Gaps = 20/397 (5%)

Query: 16  TDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T+ + +H   LK +S AD S+ + L   Y   N +  + RLF+ IP+P+++ W  +I A+
Sbjct: 25  TEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAY 84

Query: 75  S-NSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + N P   +++++ SML    L   PN+ T   + K C+ L  A   G+ +HS +    L
Sbjct: 85  AWNGPFDGAIDLYHSMLH---LGVRPNKYTYPFVLKACSGLL-AIEDGVEIHSHAKMFGL 140

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F  +ALV FY++      A+++F  +  RDVV + AMI G +      D++ +   
Sbjct: 141 ESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQ 200

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+   +      + G L    E  A+   + +HG+ V    D  V+VGTGL+D Y K   
Sbjct: 201 MQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQC 260

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVL 310
           +  AR++FD  + V N ++W+AM+ GY         LELF  + ++    P   +  +VL
Sbjct: 261 LLYARKIFDV-MGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVL 319

Query: 311 TALCNAGLAGESEK---WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            A           K   +I ++     +  G      L+S   + G ++DA R    M  
Sbjct: 320 RACAKLTDLSRGRKLHCYIIKLGXVLDILLG----NTLLSMYAKCGVIDDAIRFFDXMN- 374

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGK--RLIDINP 402
             D+  + A++S    +G A +A  + +  +L  I+P
Sbjct: 375 PKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDP 411


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 211/617 (34%), Positives = 328/617 (53%), Gaps = 54/617 (8%)

Query: 9   PQPQNTSTDPRIVHARALKSSQADRSIYNNLIT------NYSKSNLLS-----------Y 51
           P PQ     P + H  + K+ +    I+   IT      N+  S +LS           Y
Sbjct: 28  PTPQLLCKYPILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPY 87

Query: 52  SLRLFNHIPSPNIVSWTALISAHSNSPLSLN--IFLSMLRHPTLSFLPNQRTLASLFKTC 109
           +  LF  I  P+I     LI A++ SP  ++  +F S +   ++ F P+  T   L K C
Sbjct: 88  ARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVF-PDVHTFPLLLKAC 146

Query: 110 ASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF-----------RSPD------ 152
           + +  +   G ++HS   KL    +    + LV  Y+             R+P+      
Sbjct: 147 SEIP-SLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASW 205

Query: 153 --------------NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
                         +A+++F+ + +RDVV +  MI G+ Q SR  + L +F DM    + 
Sbjct: 206 NIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIE 265

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                +  AL A A L AMEQ + I  +     +   V +GT LID Y K G V  A  V
Sbjct: 266 PNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEV 325

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F + +   N +AW+AM+ G A  G     L LF  +EM+G  P+E +F+ +L A  ++ L
Sbjct: 326 FHK-MKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKL 384

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E   +   M   Y L+P   H+ C++   GRAG L+ A+ +  +MPF+P++A+W ALL
Sbjct: 385 VDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALL 444

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
           +   IHG  ++  ++GKRL++++P     YV+++N+ +  GRWD VAE+R++M++R+V K
Sbjct: 445 NACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSK 504

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
             G S+I++   +H F+AGD  H + E IY KL E+ +E +  GY P   ++L ++ + E
Sbjct: 505 TPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEE 564

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K  AL +HSEKLA+AFGL+   P G T+RI KNLR+C DCH + K IS++  REI+VRD 
Sbjct: 565 KETALCHHSEKLAIAFGLIKTDP-GTTIRITKNLRVCADCHSATKLISKIYNREIIVRDR 623

Query: 559 NRYHRFLNGSCTCGDLW 575
            R+H F +GSC+C D W
Sbjct: 624 CRFHHFRDGSCSCMDFW 640


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 314/559 (56%), Gaps = 15/559 (2%)

Query: 21  VHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH     +    ++   N++ N Y K NLL  +  LF+ +P  N+VSWT +ISA+SN+ L
Sbjct: 307 VHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQL 366

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++ +   M R      +PN  T +S+ + C  L         LHS  +K+ L    F
Sbjct: 367 NDRAMRLLAFMFRD---GVMPNMFTFSSVLRACERLYDL----KQLHSWIMKVGLESDVF 419

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             SAL+  YS+      A KVF E+   D V + ++I  FAQ+S   ++L ++  MR   
Sbjct: 420 VRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVG 479

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
             +    ++  LRA   L+ +E  R  H H  V   D+++I+   L+D Y K G + DA+
Sbjct: 480 FPADQSTLTSVLRACTSLSLLELGRQAHVH--VLKFDQDLILNNALLDMYCKCGSLEDAK 537

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F+  ++  + I+W+ M+AG AQ G     L LF  ++++G  P+  + L VL A  +A
Sbjct: 538 FIFNR-MAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHA 596

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E   +   M   Y ++PG EHY C++  +GRA +L+D  ++   M  EPD   WR 
Sbjct: 597 GLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRT 656

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL         D+A+   K ++ ++P D  AYV+++N+ +   RW++VAEVR+ MK R +
Sbjct: 657 LLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGI 716

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           RKE G SWIEV  ++H F+ GD+ H + ++I  +L + +      GYVP  + +L ++  
Sbjct: 717 RKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEG 776

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            ++ ++L YHSEKLA+ FG++S  P+ KT+RI KNL+IC DCH+  K I+ + +R IV+R
Sbjct: 777 EQREDSLRYHSEKLAIVFGIMS-FPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIR 835

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  RYH F +G C+CGD W
Sbjct: 836 DPIRYHHFQDGVCSCGDYW 854



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 150/310 (48%), Gaps = 16/310 (5%)

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSH-AFLFGLSLHSLSLKLSLHDKPF 136
           P ++++  SM R    +   +  T + L K C  L+H A   G  +H        H K F
Sbjct: 267 PSAMHVLDSMERRGVWA---DSITYSELIKCC--LAHGAVREGKRVHRHIFSNGYHPKTF 321

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMRSS 195
             + L++ Y +F   + A+ +FD++ ER+VV +  MI  ++ N++L D ++ + A M   
Sbjct: 322 LTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYS-NAQLNDRAMRLLAFMFRD 380

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V   M+  S  LRA   L  ++Q   +H   +  GL+ +V V + LID Y K G + +A
Sbjct: 381 GVMPNMFTFSSVLRACERLYDLKQ---LHSWIMKVGLESDVFVRSALIDVYSKMGELLEA 437

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VF E ++  +S+ WN+++A +AQ  D    L L+  +   GF  D+ +  +VL A  +
Sbjct: 438 LKVFREMMTG-DSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTS 496

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             L     +    + V  K +  L     L+    + G LEDA+ I   M  + D   W 
Sbjct: 497 LSLLELGRQ--AHVHV-LKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMA-KKDVISWS 552

Query: 376 ALLSFSAIHG 385
            +++  A +G
Sbjct: 553 TMIAGLAQNG 562



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 7/231 (3%)

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
           L  ++ V   M    V +     S  ++      A+ + + +H H   +G      +   
Sbjct: 266 LPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNI 325

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           LI+ Y K  ++ +A+ +FD+ +   N ++W  M++ Y+        + L   +   G  P
Sbjct: 326 LINMYVKFNLLEEAQVLFDK-MPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMP 384

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           + ++F +VL A        +   WI  MKV   LE  +   + LI    + G L +A ++
Sbjct: 385 NMFTFSSVLRACERLYDLKQLHSWI--MKV--GLESDVFVRSALIDVYSKMGELLEALKV 440

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIV 411
              M    D+ VW ++++  A H   D A  + K +  +  P D S    V
Sbjct: 441 FREM-MTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSV 490


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 307/559 (54%), Gaps = 11/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH  A++    +D  + +  +  Y +   +  +  +F+ +   N+ +W A+I   +    
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKC 416

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L++FL M R     F P+  T  ++         A  +   +HS ++   L D   
Sbjct: 417 GREALSLFLQMRRE---GFFPDATTFVNILSANVG-EEALEWVKEVHSYAIDAGLVDLRV 472

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+ALVH Y++  +   AK+VFD++ ER+V  +  MI G AQ+    ++ S+F  M    
Sbjct: 473 -GNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG 531

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +          L A A   A+E  + +H HAV +GL  ++ VG  L+  Y K G V DAR
Sbjct: 532 IVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDAR 591

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RVFD+ L   +  +W  M+ G AQ G     L+LF  +++ GF P+ YSF+AVL+A  +A
Sbjct: 592 RVFDDMLE-RDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHA 650

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E  +    +   Y +EP +EHYTC++  +GRAG+LE+A+   + MP EP  A W A
Sbjct: 651 GLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGA 710

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL     +G  +MA    K  + + P   S YV+++N+ +  G W++   VR +M+ R +
Sbjct: 711 LLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGI 770

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           RKE GRSWIEV  ++H F+ GD  H  +++IY KL +L++  +  GYVP    +L N   
Sbjct: 771 RKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQ 830

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K +AL  HSEKLA+ +GL+   P    +R+ KNLR+C DCH + K+IS+V  REIV R
Sbjct: 831 EYKEQALCSHSEKLAIVYGLMH-TPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVAR 889

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F +G C+CGD W
Sbjct: 890 DAKRFHHFKDGVCSCGDYW 908



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 171/362 (47%), Gaps = 7/362 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA  ++S  Q+D  +   L+  Y K   +  +  +F+ +   N++SWT +I   ++   
Sbjct: 52  IHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGR 111

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
               F   L+     F+PN  T  S+    AS + A  +   +HS ++   L      G+
Sbjct: 112 GQEAFHRFLQMQREGFIPNSYTYVSILNANAS-AGALEWVKEVHSHAVNAGLALDLRVGN 170

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALVH Y++  S D+A+ VFD + ERD+  +  MI G AQ+ R  ++ S+F  M       
Sbjct: 171 ALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLP 230

Query: 200 TMYCVSGALRAAA--ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +      L A+A     A+E  + +H HA  +G   ++ VG  LI  Y K G + DAR 
Sbjct: 231 NLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARL 290

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VFD  +   + I+WNAM+ G AQ G       +F  ++  GF PD  ++L++L    + G
Sbjct: 291 VFD-GMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTG 349

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
            A E  K + +  V   L   L   +  +    R G ++DA+ I   +    +   W A+
Sbjct: 350 -AWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAM 407

Query: 378 LS 379
           + 
Sbjct: 408 IG 409



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 196/417 (47%), Gaps = 21/417 (5%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VH+ A+ +  A D  + N L+  Y+KS  +  +  +F+ +   +I SWT +I     H  
Sbjct: 153 VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGR 212

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKP 135
              + ++FL M R   L   PN  T  S+    A  S   L +   +H  + K       
Sbjct: 213 GQEAFSLFLQMERGGCL---PNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDL 269

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             G+AL+H Y++  S D+A+ VFD + +RDV+ + AMI G AQN    ++ ++F  M+  
Sbjct: 270 RVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQE 329

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                       L       A E  + +H HAV  GL  ++ VG+  +  Y + G + DA
Sbjct: 330 GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDA 389

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           + +FD+ L+V N   WNAM+ G AQQ      L LF  +   GF PD  +F+ +L+A  N
Sbjct: 390 QLIFDK-LAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA--N 446

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHY---TCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            G   E+ +W++ +   Y ++ GL        L+    + G    A+++   M  E +  
Sbjct: 447 VG--EEALEWVKEVH-SYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDM-VERNVT 502

Query: 373 VWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            W  ++S  A HG    A  +  +++   I P D + YV + +  +  G  + V EV
Sbjct: 503 TWTVMISGLAQHGCGHEAFSLFLQMLREGIVP-DATTYVSILSACASTGALEWVKEV 558



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 154/336 (45%), Gaps = 7/336 (2%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN+ T  S+ K C S   +  +G  +H+  ++          +ALV+ Y +  S D+A+ 
Sbjct: 28  PNEITYLSILKACCS-PVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQL 86

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +FD++ ER+V+ +  MI G A   R  ++   F  M+        Y     L A A   A
Sbjct: 87  IFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGA 146

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +E  + +H HAV +GL  ++ VG  L+  Y K+G + DAR VFD  +   +  +W  M+ 
Sbjct: 147 LEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFD-GMVERDIFSWTVMIG 205

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL--TALCNAGLAGESEKWIERMKVRYK 334
           G AQ G       LF  +E  G  P+  ++L++L  +A+ + G A E  K + +   +  
Sbjct: 206 GLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTG-ALEWVKEVHKHAGKAG 264

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
               L     LI    + G ++DA  +   M  + D   W A++   A +G    A  + 
Sbjct: 265 FISDLRVGNALIHMYAKCGSIDDARLVFDGMC-DRDVISWNAMIGGLAQNGCGHEAFTIF 323

Query: 395 KRLIDINPYDDS-AYVIVANVLSGVGRWDEVAEVRK 429
            ++       DS  Y+ + N     G W+ V EV K
Sbjct: 324 LKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHK 359



 Score = 42.0 bits (97), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 15/161 (9%)

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK--- 330
           M+ GYA+ G     ++++  +   G  P+E ++L++L A C+      S KW +++    
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSP----VSLKWGKKIHAHI 56

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           ++   +  +   T L++   + G ++DA+ I   M  E +   W  ++   A +G+   A
Sbjct: 57  IQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKM-VERNVISWTVMIGGLAHYGRGQEA 115

Query: 391 S----KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
                +M +     N Y    YV + N  +  G  + V EV
Sbjct: 116 FHRFLQMQREGFIPNSY---TYVSILNANASAGALEWVKEV 153


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 205/573 (35%), Positives = 328/573 (57%), Gaps = 14/573 (2%)

Query: 11  PQNTST-DPRIVHARALKSSQADRSIYNNLITNYSKSNL----LSYSLRLFNHIPSPNIV 65
           P+ TS  + + + A  +K+ Q + ++   LI N+  SN     + ++ R+F+ IP P+IV
Sbjct: 43  PKCTSLRELKQIQAYTIKTHQNNPTVLTKLI-NFCTSNPTIASMDHAHRMFDKIPQPDIV 101

Query: 66  SWTALISAHS--NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
            +  +   ++  + PL   +  S +    L  LP+  T +SL K CA L  A   G  LH
Sbjct: 102 LFNTMARGYARFDDPLRAILLCSQVLCSGL--LPDDYTFSSLLKACARLK-ALEEGKQLH 158

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
            L++KL + D  +    L++ Y+     D A++VFD+I E  VV Y A+I   A+NSR  
Sbjct: 159 CLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPN 218

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           ++L++F +++ S +  T   +  AL + A L A++  R IH +   +G D+ V V T LI
Sbjct: 219 EALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALI 278

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           D Y K G + DA  VF +++   ++ AW+AM+  YA  G  S  + +   ++     PDE
Sbjct: 279 DMYAKCGSLDDAVSVF-KDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDE 337

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            +FL +L A  + GL  E  ++   M   Y + P ++HY C+I  +GRAGRLE+A +   
Sbjct: 338 ITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFID 397

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            +P +P   +WR LLS  + HG  +MA  + +R+ +++      YVI++N+ +  GRWD+
Sbjct: 398 ELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDD 457

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
           V  +RK+M D+   K  G S IEV   VH F +GD +H  +  ++  L EL++E +  GY
Sbjct: 458 VNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGY 517

Query: 484 VPVWDEMLH-NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           VP    + + ++ D EK   L YHSEKLA+ +GL++  P G T+R+VKNLR+C DCH + 
Sbjct: 518 VPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLN-TPPGTTIRVVKNLRVCVDCHNAA 576

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           K+IS +  R+I++RDV R+H F +G C+CGD W
Sbjct: 577 KFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 213/603 (35%), Positives = 324/603 (53%), Gaps = 64/603 (10%)

Query: 21  VHARALKSSQADRSIYN-NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA  L+       I N  L  +Y+    L +S+ LF+  P+PN+  WT +I+AH++  L
Sbjct: 42  IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDL 101

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTC------ASLSHAFLFGLSLHSLSLKLS 130
              +L+ +  ML HP     PN  TL+SL K C      A  SHA  FGLS H       
Sbjct: 102 FHHALSYYSQMLTHP---IQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHL------ 152

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                +  + LV  Y+R     +A+K+FD + ER +V Y AM+  +A++  L ++  +F 
Sbjct: 153 -----YVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFE 207

Query: 191 DMRSSDVGSTMYCVSG--------------------------------------ALRAAA 212
            M   DV      + G                                       L +  
Sbjct: 208 GMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCG 267

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           ++ A+E  + +H +   +G+  NV VGT L+D Y K G + DAR+VFD  +   + +AWN
Sbjct: 268 QVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDV-MEGKDVVAWN 326

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           +M+ GY   G     L+LFH +   G  P + +F+AVLTA  +AGL  +  +  + MK  
Sbjct: 327 SMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDG 386

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y +EP +EHY C+++ +GRAGR+++A  +  +M  EPD  +W  LL    IH    +  +
Sbjct: 387 YGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEE 446

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
           + + L+         YV+++N+ +    W  VA+VR +MK   V KE G S IEVK +VH
Sbjct: 447 IAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVH 506

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
            F+AGDR H R++DIY+ L ++    +   Y P  D +LH++G++EK ++L  HSEKLAL
Sbjct: 507 EFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLAL 566

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AFGL+S +P G  ++IVKNLR+C DCH   K +S++  R+I++RD NR+H F NGSC+C 
Sbjct: 567 AFGLISTSP-GAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCR 625

Query: 573 DLW 575
           D W
Sbjct: 626 DYW 628



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 149/375 (39%), Gaps = 50/375 (13%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           ++  LA L     S  H     L +H+  L+  LH  P     L   Y+      ++  +
Sbjct: 22  DKDNLALLIDNSKSTHHL----LQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTL 77

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           F      +V  +  +I   A       +LS ++ M +  +    + +S  L+A      +
Sbjct: 78  FHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKA----CTL 133

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD----------------- 260
              R +H HA+  GL  ++ V TGL+D Y + G V+ A+++FD                 
Sbjct: 134 HPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCY 193

Query: 261 -------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-------LLEMRGFA 300
                        E + + + + WN M+ GYAQ G  +  L  F                
Sbjct: 194 AKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVR 253

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
           P+E + +AVL++    G A E  KW+        ++  +   T L+    + G LEDA +
Sbjct: 254 PNEITVVAVLSSCGQVG-ALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARK 312

Query: 361 IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGV 418
           +   M  + D   W +++    IHG +D A ++   +  I + P  D  +V V    +  
Sbjct: 313 VFDVMEGK-DVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKP-SDITFVAVLTACAHA 370

Query: 419 GRWDEVAEVRKVMKD 433
           G   +  EV   MKD
Sbjct: 371 GLVSKGWEVFDSMKD 385


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 311/580 (53%), Gaps = 40/580 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D   +  +IT Y K+N L  +    N       V+W A+IS +++  L L  F  M R  
Sbjct: 222 DELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAF-EMFRKM 280

Query: 92  TLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG----SALVHFYS 146
            +S +  ++ T  S+   CA+ +  F  G  +H+  LK   +  P       +AL+ FY 
Sbjct: 281 IMSKIQLDEFTFTSVISVCAN-AGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYW 339

Query: 147 RFRSPDNAKKVFDEIRERDVVCYG-------------------------------AMIVG 175
           +    D A+++F+++ ERD+V +                                 MI G
Sbjct: 340 KCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISG 399

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
            AQ     ++L  F  M+        Y  +GA+ + + L +++  R +H   V  G + +
Sbjct: 400 LAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESS 459

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           +  G  LI  Y + G+V  A  +F  N+  +++I+WNAM+A   Q G  +  +ELF  + 
Sbjct: 460 LSAGNALITMYARCGVVDAAHCLFI-NMPCVDAISWNAMIAALGQHGQGTQAIELFEEML 518

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G  PD  SFL V++A  +AGL  E  K+ + M   Y + P  EHY  +I  + RAG+ 
Sbjct: 519 KEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKF 578

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
            +A+ +  +MPFEP A +W ALL+   IHG  D+  +  +RL ++ P  D  YV+++N+ 
Sbjct: 579 SEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMY 638

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           +  G+W+++A+VRK+M+DR V+KE G SWIEV+ KVH FL GD  H     IY  L +L+
Sbjct: 639 AVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLV 698

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
            E  ++GYVP    +LH+V    K   L  HSEKLA+A+G +   P G T+R+ KNLRIC
Sbjct: 699 LEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMK-LPHGATVRVFKNLRIC 757

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            DCH +FK++S+VV REIVVRD  R+H F +G C+CGD W
Sbjct: 758 GDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 127/592 (21%), Positives = 222/592 (37%), Gaps = 142/592 (23%)

Query: 19  RIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           R VHA  + S    R  I N LI  YSKS+ L+Y+  LF+ IP P+IV+ T LI+A+   
Sbjct: 33  RPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAA 92

Query: 75  ----------SNSPL-----------------------SLNIFLSMLRHPTLSFLPNQRT 101
                     S++PL                       ++ +F  M R    +F P+  T
Sbjct: 93  GDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRD---NFRPDNYT 149

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD--------- 152
             S+    A ++        LH   +K          +AL+  Y +  +           
Sbjct: 150 FTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMA 209

Query: 153 NAKKVFDEIRERDV-------------------------------VCYGAMIVGFAQNSR 181
            A+K+FDE+  RD                                V + AMI G+A    
Sbjct: 210 EARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGL 269

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS----GLDRNVI 237
            +++  +F  M  S +    +  +  +   A        + +H + + +      D  + 
Sbjct: 270 YLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMP 329

Query: 238 VGTGLIDGYGKAGIVSDARRVF------------------------DENLSVLNS----- 268
           V   LI  Y K G V  A+ +F                        DE  S  N      
Sbjct: 330 VNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKN 389

Query: 269 -IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W  M++G AQ G     L+ F+ ++++GF P +Y+F   + + C+   + +  + + 
Sbjct: 390 ILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIIS-CSVLGSLKHGRQLH 448

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
              VRY  E  L     LI+   R G ++ A  + + MP   DA  W A+++    HG+ 
Sbjct: 449 AQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-VDAISWNAMIAALGQHGQG 507

Query: 388 DMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445
             A ++ + ++   I P D  +++ V +  S  G   E                 GR + 
Sbjct: 508 TQAIELFEEMLKEGILP-DRISFLTVISACSHAGLVKE-----------------GRKYF 549

Query: 446 EVKGKVHVFLAGDRMHERTEDI------YTKLAELMEECERLGYVPVWDEML 491
           +    V+     +  + R  D+      +++  E+ME        P+W+ +L
Sbjct: 550 DSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALL 601



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 126/315 (40%), Gaps = 6/315 (1%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLS 86
           K  + D   +N +++ Y     +  +   FN +P  NI+SW  +IS  +    +      
Sbjct: 353 KMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKF 412

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
             R     F P     A    +C+ L  +   G  LH+  ++         G+AL+  Y+
Sbjct: 413 FNRMKLQGFEPCDYAFAGAIISCSVLG-SLKHGRQLHAQVVRYGYESSLSAGNALITMYA 471

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           R    D A  +F  +   D + + AMI    Q+ +   ++ +F +M    +         
Sbjct: 472 RCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLT 531

Query: 207 ALRAAAELAAMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
            + A +    +++ R        V G++ +      +ID   +AG  S+A+ V +     
Sbjct: 532 VISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFE 591

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             +  W A++AG    G+    +E    L E++      Y  L+ + A+  AG   +  K
Sbjct: 592 PGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAV--AGQWNDMAK 649

Query: 325 WIERMKVR-YKLEPG 338
             + M+ R  K EPG
Sbjct: 650 VRKLMRDRGVKKEPG 664


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 199/564 (35%), Positives = 314/564 (55%), Gaps = 12/564 (2%)

Query: 19  RIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
            +V+AR +  KSS  D   +  LIT Y+    L  +  LF+ IP  ++VSW A+IS ++ 
Sbjct: 178 ELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQ 237

Query: 77  S---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           S     ++  F  M R       PN  T+ S+   CA    +   G  + S      L  
Sbjct: 238 SGRVEEAMAFFEEMRR---AKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGS 294

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + L+  Y +    + A  +F++I++++VV +  MI G+   S   ++L +F  M 
Sbjct: 295 NIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMM 354

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA--VVSGLDRNVIVGTGLIDGYGKAGI 251
            S++          L A A L A++  + +H +    +  +   V + T LID Y K G 
Sbjct: 355 QSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGD 414

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           ++ A+R+FD  ++  +   WNAM++G+A  G   T L LF  +   GF PD+ +F+ VLT
Sbjct: 415 LAVAKRIFD-CMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLT 473

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  +AGL     ++   M   YK+ P L HY C+I   GRAG  ++AE +   M  +PD 
Sbjct: 474 ACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDG 533

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           A+W +LL    IH + ++A  + K L ++ P + SAYV+++N+ +G GRW++VA++R  +
Sbjct: 534 AIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRL 593

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
            D R++K  G S IEV   VH FL GD++H ++ +IY  L E+    E+ G+VP   E+L
Sbjct: 594 NDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVL 653

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           +++ +  K   L +HSEKLA+AFGL+S  P G T+RI+KNLR+C +CH + K IS++  R
Sbjct: 654 YDMDEEWKEGVLSHHSEKLAIAFGLISTKP-GTTIRIMKNLRVCGNCHSATKLISKIFNR 712

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+ RD NR+H F +GSC+C D W
Sbjct: 713 EIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 183/390 (46%), Gaps = 52/390 (13%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALIS--AHSNSP-LSLNIFLSMLRHPTLSFLPNQRTLASL 105
           LSY+L LF  I +PN V W  +I   + S SP L+L  ++ M+   T    PN+ T  S+
Sbjct: 78  LSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGT---EPNEYTFPSI 134

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY---------------SRFRS 150
           FK+C  +  A   G  +H+  LKL L    F  ++L++ Y               S  R 
Sbjct: 135 FKSCTKIRGAHE-GKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRD 193

Query: 151 P----------------DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
                            D A+++FDEI  RDVV + AMI G+AQ+ R+ ++++ F +MR 
Sbjct: 194 AVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRR 253

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS-----GLDRNVIVGTGLIDGYGKA 249
           + V   +  +   L A A+  +  Q     G+ V S     GL  N+ +  GLID Y K 
Sbjct: 254 AKVTPNVSTMLSVLSACAQSGSSLQL----GNWVRSWIEDRGLGSNIRLVNGLIDMYVKC 309

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G + +A  +F E +   N ++WN M+ GY         L LF  +      P++ +FL++
Sbjct: 310 GDLEEASNLF-EKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSI 368

Query: 310 LTALCNAGLAGESEKWIERM--KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           L A  N G A +  KW+     K    ++  +  +T LI    + G L  A+RI   M  
Sbjct: 369 LPACANLG-ALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNT 427

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           +   A W A++S  A+HG  D A  +  R+
Sbjct: 428 K-SLATWNAMISGFAMHGHTDTALGLFSRM 456



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 127/266 (47%), Gaps = 22/266 (8%)

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
           HP+L+ L N +TL +L +              +HS  +K  LH+  F  S L+ F +   
Sbjct: 29  HPSLTLLSNCKTLQTLKQ--------------IHSQIIKTGLHNTHFALSKLIEFCAVSP 74

Query: 150 SPD--NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             D   A  +F  IR  + V +  MI G + +     +L  +  M SS      Y     
Sbjct: 75  HGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSI 134

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
            ++  ++    + + +H H +  GL+ N  V T LI+ Y + G + +AR VFD++ S+ +
Sbjct: 135 FKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKS-SMRD 193

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
           ++++ A++ GYA +G      ELF  + +R    D  S+ A+++    +G   E+  + E
Sbjct: 194 AVSFTALITGYASKGFLDEARELFDEIPVR----DVVSWNAMISGYAQSGRVEEAMAFFE 249

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAG 353
            M+ R K+ P +     ++SA  ++G
Sbjct: 250 EMR-RAKVTPNVSTMLSVLSACAQSG 274


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 192/545 (35%), Positives = 313/545 (57%), Gaps = 13/545 (2%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPT 92
           +N LI  Y +   L  + +LF+ +   NI +W A+I+  +    +  +L++F  M     
Sbjct: 131 FNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMY---G 187

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           L FLP++ TL S+ + CA L  + L G  +H+  LK         GS+L H Y +  S  
Sbjct: 188 LGFLPDEFTLGSVLRGCAGL-RSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLS 246

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           + +K+   +  R VV +  +I G AQN    + L+ +  M+ +            L A +
Sbjct: 247 DGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACS 306

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF--DENLSVLNSIA 270
           ELA + Q + IH   + +G    + V + LI  Y ++G + D+ + F   EN  V   + 
Sbjct: 307 ELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDV---VL 363

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W++M+A Y   G     LELFH +E      +E +FL++L A  ++GL  +  ++ + M 
Sbjct: 364 WSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMV 423

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            +YKL+P +EHYTC++  +GRAGRLE+AE +  +MP +PD  +W+ LL+   +H +A+MA
Sbjct: 424 KKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMA 483

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
            ++ + +I ++P D ++YV+++N+ +    W  V+++RK M+DR VRKE G SW+E+K  
Sbjct: 484 ERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNL 543

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
           VH F  GD+ H +  +I   L ELM E ++ GYVP    +LH++ + EK   L +HSEK 
Sbjct: 544 VHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKF 603

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AF L++       +R++KNLR+C DCH + K ISR+  REI+VRD +R+H F +G C+
Sbjct: 604 AIAFALMN-TSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECS 662

Query: 571 CGDLW 575
           CG+ W
Sbjct: 663 CGNYW 667



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 42/230 (18%)

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           D  +S++ S     S  L++  +L ++   + +H   + SG  ++  +   L++ Y K G
Sbjct: 52  DTFTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLG 111

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR------------- 297
               +  +F  N+   N +++N ++ GY Q GD  +  +LF  +  R             
Sbjct: 112 QFKSSLVLFS-NMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLT 170

Query: 298 ------------------GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
                             GF PDE++  +VL      G AG       +      L+ G 
Sbjct: 171 QFEFNKQALSLFKEMYGLGFLPDEFTLGSVLR-----GCAGLRSLLAGQEVHACLLKCGF 225

Query: 340 EHYTCLISAMG----RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           E  + + S++     ++G L D E++  +MP     A W  L++  A +G
Sbjct: 226 ELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVA-WNTLIAGKAQNG 274


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 201/556 (36%), Positives = 300/556 (53%), Gaps = 40/556 (7%)

Query: 55  LFN-HIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
           LFN ++   N+ SW ++I+  + S  S+    +      LS  PN+ T     K+C++L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 114 --HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
             H+   G   H  +L        F  SALV  YS+     +A+ +FDEI  R++V + +
Sbjct: 91  DLHS---GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTS 147

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDV-----------------------------GSTMY 202
           MI G+ QN     +L VF  M   DV                             G   Y
Sbjct: 148 MITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINY 207

Query: 203 ---CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               +S  L A A   +    + IH   +  GL+ NV VGT +ID Y K G V  AR+ F
Sbjct: 208 NAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAF 267

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D  +   N  +W+AM+AGY   G     LE+F+ + M G  P+  +F++VL A  +AGL 
Sbjct: 268 DR-MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLL 326

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E   W + M   + +EPG+EHY C++  +GRAG L++A  +   M   PD  VW ALL 
Sbjct: 327 EEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLG 386

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +H   D+     ++L +++P +   YV+++N+ +  GRW++V  +R +MK+  + K 
Sbjct: 387 ACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKP 446

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S +++KG+VHVFL GDR H + E IY  L +L  + + +GYVP    +LH+VG  EK
Sbjct: 447 PGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEK 506

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              L  HSEKLA+AFG+++  P G T+ I+KNLR+C DCH + K+IS++V+REIVVRD  
Sbjct: 507 EMVLRVHSEKLAVAFGIMNTVP-GTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSK 565

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 566 RFHHFRDGLCSCGDYW 581



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 105/202 (51%), Gaps = 8/202 (3%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR L    + R+I  + ++IT Y +++    +LR+F+ +   +++SW ++I+ ++ + + 
Sbjct: 130 ARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMS 189

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S+ IF  M++   +++  N  TL+++   CA  S +   G  +H   +K+ L    F 
Sbjct: 190 TESMEIFHRMVKDGEINY--NAVTLSAVLLACAH-SGSQRLGKCIHDQVIKMGLESNVFV 246

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G++++  Y +    + A+K FD +RE++V  + AM+ G+  +    ++L VF +M  + V
Sbjct: 247 GTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGV 306

Query: 198 GSTMYCVSGALRAAAELAAMEQ 219
                     L A +    +E+
Sbjct: 307 KPNYITFVSVLAACSHAGLLEE 328


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 190/544 (34%), Positives = 312/544 (57%), Gaps = 9/544 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           +YN +IT   +  ++  + RLF  +   + ++WT +++  + + L   +LN F  M R  
Sbjct: 208 MYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRM-RFQ 266

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            ++   +Q T  S+   C +LS A   G  +H+  ++    D  F GSALV  YS+ RS 
Sbjct: 267 GIAI--DQYTFGSILTACGALS-ALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSI 323

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A+  F  +  ++++ + A+IVG+ QN    +++ VF++M+   +    + +   + + 
Sbjct: 324 KPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSC 383

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A LA++E+    H  A+VSGL   + V   L+  YGK G + DA R+FDE L   + ++W
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEML-FHDQVSW 442

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            A++ GYAQ G     ++LF  +  +   PD  +F+ VL+A   AG   +   +   M+ 
Sbjct: 443 TALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQK 502

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            + + P  +HYTC+I    R+GRL++AE     MP  PDA  W  LLS   + G  ++  
Sbjct: 503 DHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQ 562

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              + L++I+P + ++YV++ ++ +  G W++VA++R+ M+DR+V+KE G SWI+ K KV
Sbjct: 563 WAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKV 622

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H+F A D+ H  ++ IY KL  L  +    GY P    +LH+V D +K   + +HSEKLA
Sbjct: 623 HIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLA 682

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL+   P    +RIVKNLR+C DCH + K IS++  R+I+VRD  R+H+F NG C+C
Sbjct: 683 IAFGLMF-VPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSC 741

Query: 572 GDLW 575
           GD W
Sbjct: 742 GDFW 745



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 129/522 (24%), Positives = 219/522 (41%), Gaps = 96/522 (18%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           + N+L+T Y K+   + + R+F+  P PN+ ++ AL+S  +++ L     ++F SM +  
Sbjct: 43  LLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRD 102

Query: 92  TLSF------------------------------LPNQRTLASLFKTCASLSHAFLFGLS 121
           T+S+                               P++ T++++    ++L    L G  
Sbjct: 103 TVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRAL-GRQ 161

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI-------- 173
            H   L+L      F GS LV  Y++     +AK+VFDE+  ++VV Y  MI        
Sbjct: 162 FHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKM 221

Query: 174 -----------------------VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
                                   GF QN     +L+ F  MR   +    Y     L A
Sbjct: 222 VEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTA 281

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
              L+A+EQ + IH + + +  D NV VG+ L+D Y K   +  A   F   +S  N I+
Sbjct: 282 CGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAF-RRMSCKNIIS 340

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W A++ GY Q G     + +F  ++  G  PD+++  +V+++  N     E  ++     
Sbjct: 341 WTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQF----- 395

Query: 331 VRYKLEPGLEHY----TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
               L  GL HY      L++  G+ G +EDA R+   M F  D   W AL++  A  G+
Sbjct: 396 HCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFH-DQVSWTALVTGYAQFGR 454

Query: 387 ADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSW 444
           A     + ++++  D+ P D   ++    VLS   R   V              E G S+
Sbjct: 455 AKETIDLFEKMLAKDVKP-DGVTFI---GVLSACSRAGFV--------------EKGCSY 496

Query: 445 IEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
                K H  +  D  +    D+Y++   L E  E +  +P+
Sbjct: 497 FHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPM 538


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 201/601 (33%), Positives = 318/601 (52%), Gaps = 50/601 (8%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPS----PNIVSWTALIS 72
           RI+ AR L     DR +  ++ +I  YS+  L+  +  LF  + S    PN+VSW  +++
Sbjct: 154 RILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLA 213

Query: 73  AHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
              N+     ++ +F  ML      F P+  T++ +      L    + G  +H   +K 
Sbjct: 214 GFGNNGFYDEAVGMFRMMLVQ---GFWPDGSTVSCVLPAVGCLEDVVV-GAQVHGYVIKQ 269

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD------------------------ 165
            L    F  SA++  Y +        +VFDE+ E +                        
Sbjct: 270 GLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVF 329

Query: 166 -----------VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
                      VV + ++I   +QN + +++L +F DM++  V      +   + A   +
Sbjct: 330 NKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNI 389

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           +A+   + IH  ++  G+  +V VG+ LID Y K G +  ARR FD+ +S LN ++WNA+
Sbjct: 390 SALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDK-MSALNLVSWNAV 448

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           M GYA  G     +E+FH++   G  PD  +F  VL+A    GL  E  +    M   + 
Sbjct: 449 MKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHG 508

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           +EP +EHY CL++ + R G+LE+A  I   MPFEPDA VW ALLS   +H    +     
Sbjct: 509 IEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAA 568

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           ++L  + P +   Y++++N+ +  G WDE   +R+VMK + +RK  G SWIEV  KVH+ 
Sbjct: 569 EKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHML 628

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
           LAGD+ H + +DI  KL +L  + ++ GY+P  + +L +V +++K + L  HSEKLA+  
Sbjct: 629 LAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVL 688

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL++ +P G+ L+++KNLRIC DCH   K ISR+  REI VRD NR+H F +G C+CGD 
Sbjct: 689 GLLNTSP-GQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDF 747

Query: 575 W 575
           W
Sbjct: 748 W 748



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 192/457 (42%), Gaps = 88/457 (19%)

Query: 16  TDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLS---YSLRLFNHIPSPNIVSWTALI 71
           +  R  HA  L+ +  +D  +  +L++ Y+ +  LS    SL L +H+P P + S+++LI
Sbjct: 17  SQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLI 76

Query: 72  SAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
            A + S   P  L  F  +  HP L  +P+   L S  K+CASL  A   G  LH+ +  
Sbjct: 77  HAFARSHHFPHVLTTFSHL--HP-LRLIPDAFLLPSAIKSCASL-RALDPGQQLHAFAAA 132

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
                     S+L H Y +     +A+K+FD + +RDVV + AMI G+++   + ++  +
Sbjct: 133 SGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKEL 192

Query: 189 FADMRSSDV--------------------------------------GSTMYCVSGALRA 210
           F +MRS  V                                      GST+ CV  A+  
Sbjct: 193 FGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGC 252

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE--------- 261
             ++    Q   +HG+ +  GL  +  V + ++D YGK G V +  RVFDE         
Sbjct: 253 LEDVVVGAQ---VHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSL 309

Query: 262 ---------------NLSV----------LNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
                           L V          LN + W +++A  +Q G     LELF  ++ 
Sbjct: 310 NAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQA 369

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            G  P+  +  +++ A C    A    K I    +R  +   +   + LI    + GR++
Sbjct: 370 YGVEPNAVTIPSLIPA-CGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQ 428

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            A R    M    +   W A++   A+HGKA    +M
Sbjct: 429 LARRCFDKMS-ALNLVSWNAVMKGYAMHGKAKETMEM 464


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/563 (35%), Positives = 329/563 (58%), Gaps = 14/563 (2%)

Query: 21  VHARALKSS-QADRSIYNNLI---TNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AH 74
           + A  +K++ Q+D S+   LI   T    ++ + ++  LF+ I   +I+ +  +    A 
Sbjct: 48  IQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYAR 107

Query: 75  SNSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           SNSP L+ ++F  +L       LP+  T +SL K CAS S A   G+ LH  ++KL L+ 
Sbjct: 108 SNSPYLAFSLFGELL---CSGLLPDDYTFSSLLKACAS-SKALREGMGLHCFAVKLGLNH 163

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             +    L++ Y+     + A+ VFDE+ +  +V Y A+I G+A++S+  ++LS+F +++
Sbjct: 164 NIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQ 223

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           +S++  T   +   + + A L A++  + IH +    G D+ V V T LID + K G ++
Sbjct: 224 ASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLT 283

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA  +F E + V ++ AW+AM+  +A  GD    + +F  ++  G  PDE +FL +L A 
Sbjct: 284 DAISIF-EGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYAC 342

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            +AGL  +   +   M   Y + PG++HY C++  +GRAG L++A      +  +    +
Sbjct: 343 SHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPIL 402

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           WR LLS  + HG  +MA ++ +R+ +++      YVI++N+ + VGRW++V  +RK+MKD
Sbjct: 403 WRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKD 462

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R V K  G S +EV   VH F +GD +H  + ++   L ELM+E + +GYVP    + H 
Sbjct: 463 RGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHA 522

Query: 494 VGDREKRE-ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
             + E +E  L YHSEKLA+AFGL++  P G T+R+ KNLRIC DCH + K IS +  R+
Sbjct: 523 DMEEEGKELVLRYHSEKLAMAFGLLN-TPPGTTIRVAKNLRICGDCHNAAKLISFIFGRK 581

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IV+RDV R+HRF +G C+CGD W
Sbjct: 582 IVIRDVQRFHRFEDGKCSCGDFW 604


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 193/556 (34%), Positives = 309/556 (55%), Gaps = 4/556 (0%)

Query: 21  VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA  L+S+       NN L+  YSK + L    RLF+ +P  + VS+  +I+A++ +  
Sbjct: 258 VHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQC 317

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +  +         L F       A++     SL    + G  +H+  + L L  +   G+
Sbjct: 318 AATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHI-GKQIHAQLVLLGLASEDLLGN 376

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  YS+    D AK  F    E+  + + A+I G+ QN +  ++L +F+DMR + +  
Sbjct: 377 ALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRP 436

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                S  ++A++ LA +   R +H + + SG   +V  G+ L+D Y K G + +A R F
Sbjct: 437 DRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTF 496

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           DE +   NSI+WNA+++ YA  G+    +++F  +   GF PD  +FL+VL A  + GLA
Sbjct: 497 DE-MPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLA 555

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E  K+   MK +Y + P  EHY C+I  +GR G     +++ + MPF+ D  +W ++L 
Sbjct: 556 DECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILH 615

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IHG  ++A     +L  + P D + YVI++N+ +  G+W++ A V+K+M+DR VRKE
Sbjct: 616 SCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKE 675

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SW+E+K K++ F + D      ++I  +L  L +E ++ GY P     LH V    K
Sbjct: 676 SGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELK 735

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
            E+L YHSE+LA+AF L++  P G  +RI+KNL  C DCH   K IS++V R+I+VRD  
Sbjct: 736 LESLKYHSERLAIAFALMN-TPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSR 794

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 795 RFHHFKDGVCSCGDYW 810



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 173/378 (45%), Gaps = 21/378 (5%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NS 77
           ARA+      ++I+  N +++ YS S  L  +  LF   P  N  +WT ++ AH+    +
Sbjct: 62  ARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRT 121

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L++F +ML       +P++ T+ ++               SLH  ++K  L    F 
Sbjct: 122 SDALSLFRAMLGE---GVIPDRVTVTTVLNLPGCTVP------SLHPFAIKFGLDTHVFV 172

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + L+  Y +      A++VF E+ ++D V Y AM++G ++      +L +FA MR + +
Sbjct: 173 CNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGI 232

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +T +  S  L  AA +A +     +H   + S    NV V   L+D Y K   + D RR
Sbjct: 233 PATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRR 292

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FDE +   +++++N ++A YA     +TVL LF  ++  GF   +   L   T L  AG
Sbjct: 293 LFDE-MPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF---DRQVLPYATMLSVAG 348

Query: 318 LAGESE--KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
              +    K I    V   L         LI    + G L DA +   +   E  A  W 
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGML-DAAKSNFSNRSEKSAISWT 407

Query: 376 ALLSFSAIHGKADMASKM 393
           AL++    +G+ + A ++
Sbjct: 408 ALITGYVQNGQHEEALQL 425


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 191/580 (32%), Positives = 318/580 (54%), Gaps = 40/580 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           + S +N +I+ +     +  +L  F  +   +IVSW ++I+    H     +L  F S+L
Sbjct: 172 NTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSIL 231

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR- 147
           +  +L   P++ +LAS    CA+L     FG  +H   ++         G+AL+  Y++ 
Sbjct: 232 KDTSLK--PDRFSLASALSACANL-EKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKS 288

Query: 148 ----------------------FRSPDN----------AKKVFDEIRERDVVCYGAMIVG 175
                                 F +  N          A+++F+ +++ DVV + AMIVG
Sbjct: 289 GGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVG 348

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           + QN    D++ VF  M S       + ++  L A++ + ++   + IH  A+ SG   +
Sbjct: 349 YVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALS 408

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
             VG  L   Y KAG ++ AR+VF+      ++++W +M+   AQ G     +ELF  + 
Sbjct: 409 PSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQML 468

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G  PD  +++ VL+A  + GL  +   + + MK  +K++P L HY C++   GRAG L
Sbjct: 469 TLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLL 528

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
           ++A +    MP EPD   W +LLS   ++   D+A    +RL+ I P +  AY  +ANV 
Sbjct: 529 QEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVY 588

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           S  G+WD+ A++RK+MK R V+KE G SW++++ K HVF   D +H + ++IY  + ++ 
Sbjct: 589 SSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIW 648

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
           +E +++G+ P  + +LH++    K + L YHSEKLA+AFG++S  P   TLRI+KNLR+C
Sbjct: 649 KEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIIS-TPENTTLRIMKNLRVC 707

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            DCH + K+IS++V+REI+VRD  R+H F +GSC+C D W
Sbjct: 708 NDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 208/486 (42%), Gaps = 92/486 (18%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N +++ Y+K   L  + ++F+ IP  + VSWT +I  ++       ++ IF+ M++   
Sbjct: 44  WNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKV 103

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
              LP Q TL ++  +CA+     + G  +HS  +KL LH      ++L++ Y++     
Sbjct: 104 ---LPTQFTLTNVLASCAATGSRGI-GKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLK 159

Query: 153 NAKKVFDEIR-------------------------------ERDVVCYGAMIVGFAQNSR 181
            AK VFD ++                               ERD+V + +MI G  Q+  
Sbjct: 160 MAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGF 219

Query: 182 LVDSLSVFAD-MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
             ++L  F+  ++ + +    + ++ AL A A L  +   + IHG+ V +  D +  VG 
Sbjct: 220 DNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN 279

Query: 241 GLIDGYGKAGIVSDARRVFDEN----------LSVLNS---------------------- 268
            LI  Y K+G V  ARR+ +++           ++LN                       
Sbjct: 280 ALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDV 339

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           +AW AM+ GY Q G  +  +E+F  +   G  P+ ++  A+L+A  ++  +    K I  
Sbjct: 340 VAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSA-SSSVTSLNHGKQIHA 398

Query: 329 MKVRY--KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             +R    L P + +   L +   +AG +  A ++   +    D   W +++   A HG 
Sbjct: 399 SAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGL 456

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            + A ++ ++++ +    D  ++    VLS       V              E GRS+ +
Sbjct: 457 GEEAIELFEQMLTLGIKPD--HITYVGVLSACTHGGLV--------------EQGRSYFD 500

Query: 447 VKGKVH 452
           +   VH
Sbjct: 501 LMKNVH 506



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 141/316 (44%), Gaps = 13/316 (4%)

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
           F L  H L  ++ +    F  + ++  Y++    + A +VFD I  RD V +  +IVG+ 
Sbjct: 25  FHLDAHDLFNEMPVK-TTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYN 83

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           Q  R  D++ +F DM    V  T + ++  L + A   +    + +H   V  GL   V 
Sbjct: 84  QMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVP 143

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           V   L++ Y K G +  A+ VFD  + + N+ +WNAM++ +   G     L  F LL  R
Sbjct: 144 VANSLLNMYAKTGDLKMAKVVFDR-MKLRNTSSWNAMISLHMNCGRVDLALAQFELLSER 202

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
               D  S+ +++      G   E+ ++   +     L+P        +SA     +L  
Sbjct: 203 ----DIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSF 258

Query: 358 AERI---AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414
            ++I    +   F+   AV  AL+S  A  G  ++A    +R+I+ +   D   +    +
Sbjct: 259 GKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIA----RRIIEQSGISDLDVIAFTAL 314

Query: 415 LSGVGRWDEVAEVRKV 430
           L+G  +  ++   R++
Sbjct: 315 LNGYVKLGDITPARQI 330



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 133/264 (50%), Gaps = 13/264 (4%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           RI+    +  S  D   +  L+  Y K   ++ + ++FN +  P++V+WTA+I  +  + 
Sbjct: 296 RIIEQSGI--SDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNG 353

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           L   ++ +F +M+        PN  TLA++    +S++ +   G  +H+ +++      P
Sbjct: 354 LNNDAIEVFKTMVSEGP---RPNSFTLAAMLSASSSVT-SLNHGKQIHASAIRSGEALSP 409

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
             G+AL   Y++  S + A+KVF+ +R+ RD V + +MI+  AQ+    +++ +F  M +
Sbjct: 410 SVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLT 469

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHG-HAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             +        G L A      +EQ R        V  +D  +     ++D +G+AG++ 
Sbjct: 470 LGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQ 529

Query: 254 DARRVFDENLSV-LNSIAWNAMMA 276
           +A + F EN+ +  + IAW ++++
Sbjct: 530 EAYK-FVENMPMEPDVIAWGSLLS 552



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 34/191 (17%)

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           GL  +V +   L++ Y K G   DA  +F+E + V  + +WN +++GYA+QG      ++
Sbjct: 5   GLTFSVYLMNNLMNLYAKTGFHLDAHDLFNE-MPVKTTFSWNTILSGYAKQGKLEKAHQV 63

Query: 291 FHLLEMR----------GF---------------------APDEYSFLAVLTALCNAGLA 319
           F L+ +R          G+                      P +++   VL +    G  
Sbjct: 64  FDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSR 123

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           G  +K +    V+  L   +     L++   + G L+ A+ +   M    + + W A++S
Sbjct: 124 GIGKK-VHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-NTSSWNAMIS 181

Query: 380 FSAIHGKADMA 390
                G+ D+A
Sbjct: 182 LHMNCGRVDLA 192


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 318/560 (56%), Gaps = 11/560 (1%)

Query: 21  VHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +H  AL+    Q+D  + N  +  Y+K   L Y+  +F  + S  + SW ALI  H  + 
Sbjct: 422 IHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNG 481

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               +L+++L ++R   L   P+  T+ASL   CA L  +   G  +H   L+       
Sbjct: 482 FPRKALDLYL-LMRGSGLE--PDLFTIASLLSACARLK-SLSCGKEIHGSMLRNGFELDE 537

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F   +LV  Y +      AK  FD + E+++VC+  MI GF+QN    D+L +F  M SS
Sbjct: 538 FICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSS 597

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +      + GAL A ++++A+   + +H  AV S L  +  V   LID Y K G +  +
Sbjct: 598 KIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQS 657

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           + +FD  + +   + WN ++ GY   G     +ELF  ++  GF PD  +F+A+LTA  +
Sbjct: 658 QNIFDR-VHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNH 716

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  E  +++ +M+  + ++P LEHY C++  +GRAGRL +A  +   +P +PD+ +W 
Sbjct: 717 AGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWS 776

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           +LLS    +   D+  K+  +L+++ P     YV+++N  + +G+WDEV ++R+ MK+  
Sbjct: 777 SLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIG 836

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           ++K+ G SWIE+ GKV  FL GD    ++  I     EL ++  ++GY P    +LH + 
Sbjct: 837 LQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELE 896

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + EK + L  HSEKLA++FGL++ A +G TLR+ KNLRIC DCH + K +S++ +REI+V
Sbjct: 897 EDEKIKILRNHSEKLAISFGLLNTA-KGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIV 955

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD  R+H F NG C+CGD W
Sbjct: 956 RDNKRFHHFKNGFCSCGDYW 975



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 164/359 (45%), Gaps = 20/359 (5%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           Q D  +   L+T YS  +    S  +FN     N+  W AL+S +  + L   ++ +F+ 
Sbjct: 126 QNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVE 185

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M+      F+P+  TL  + K C  +    L G ++H  +LK  +    F G+AL+  Y 
Sbjct: 186 MI--SLTEFVPDNFTLPCVIKACVGVYDVRL-GEAVHGFALKTKVLSDVFVGNALIAMYG 242

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG-----STM 201
           +F   ++A KVFD++ +R++V + +++    +N    +S  +F  + + D G     +TM
Sbjct: 243 KFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATM 302

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
             V   +   A    +    V HG A+  GL   + V + L+D Y K G + +AR +FD 
Sbjct: 303 VTV---IPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT 359

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAG 320
           N    N I+WN+M+ GY++  D     EL   ++M      +E + L VL  +C   +  
Sbjct: 360 NEK--NVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVL-PVCEEEIQF 416

Query: 321 ESEKWIERMKVRYKLEPGLEHY-TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
              K I    +R+      E      ++   + G L  AE +   M      + W AL+
Sbjct: 417 LKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGME-SKMVSSWNALI 474


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 319/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   +K+ + +D  I   L+  Y+K++ L  ++++F+ +   +++ W ALIS  S+ 
Sbjct: 230 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 289

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                + +IF   LR   L    N+ TLA++ K+ ASL  A      +H+L+ K+     
Sbjct: 290 GRHDEAFSIFYG-LRKEGLGV--NRTTLAAVLKSTASLEAASA-TRQVHALAEKIGFIFD 345

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + L+  Y +     +A +VF+E    D++   +MI   +Q      ++ +F +M  
Sbjct: 346 AHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLR 405

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +    + +S  L A A L+A EQ + +H H +      +   G  L+  Y K G + D
Sbjct: 406 KGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIED 465

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F  +L     ++W+AM+ G AQ G     LELF  +   G  P+  +  +VL A  
Sbjct: 466 AELAF-SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN 524

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E++++   MK  + ++   EHY+C+I  +GRAG+L+DA  +  +MPF+ +A+VW
Sbjct: 525 HAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVW 584

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL  S +H   ++     ++L  + P     +V++AN  +  G W+EVA+VRK+MKD 
Sbjct: 585 GALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDS 644

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++KE   SW+EVK KVH F+ GD+ H  T++IY+KL EL +   + GY+P  D  LH++
Sbjct: 645 NIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDL 704

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK   L +HSE+LA+AF L+S  P G  +R+ KNLRICRDCH +FK+IS +V REI+
Sbjct: 705 DRSEKELLLSHHSERLAVAFALLS-TPPGAPIRVKKNLRICRDCHMAFKFISNIVSREII 763

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD+NR+H F +G+C+CGD W
Sbjct: 764 IRDINRFHHFRDGTCSCGDYW 784



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 182/392 (46%), Gaps = 17/392 (4%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---- 73
           R VHA  ++   + D    N L+  Y K   +  +  +F  +P  ++VSW ALIS     
Sbjct: 129 RQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 188

Query: 74  -HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            H +  + L     +L+  +   +PN   L+S+ K CA  + AF  G  +H   +K +  
Sbjct: 189 GHDHRAIEL-----LLQMKSSGLVPNVFMLSSILKACAG-AGAFDLGRQIHGFMIKANAD 242

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              + G  LV  Y++    D+A KVFD +  RD++ + A+I G +   R  ++ S+F  +
Sbjct: 243 SDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGL 302

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R   +G     ++  L++ A L A    R +H  A   G   +  V  GLID Y K   +
Sbjct: 303 RKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCL 362

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           SDA RVF+E  S  + IA  +M+   +Q       ++LF  +  +G  PD +   ++L A
Sbjct: 363 SDAIRVFEE-CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 421

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            C +  A E  K +    ++ +          L+    + G +EDAE    ++P E    
Sbjct: 422 -CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVV 479

Query: 373 VWRALLSFSAIHGKADMASKMGKRLID--INP 402
            W A++   A HG    A ++  R++D  INP
Sbjct: 480 SWSAMIGGLAQHGHGKRALELFGRMVDEGINP 511



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 10/297 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSP 78
           VHA A+ +   +D  + N L+  Y     +  + R+F+   S  N VSW  L+SA+  + 
Sbjct: 29  VHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKND 88

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               ++ +F  M+        P +   + +   C   S     G  +H++ +++      
Sbjct: 89  QCGDAIQVFGEMVWS---GIQPTEFGFSCVVNACTG-SRNIDAGRQVHAMVVRMGYEKDV 144

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  +ALV  Y +    D A  +F+++ + DVV + A+I G   N     ++ +   M+SS
Sbjct: 145 FTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSS 204

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +   ++ +S  L+A A   A +  R IHG  + +  D +  +G GL+D Y K   + DA
Sbjct: 205 GLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 264

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +VFD  +S  + I WNA+++G +  G       +F+ L   G   +  +  AVL +
Sbjct: 265 MKVFDW-MSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 320



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 126/274 (45%), Gaps = 4/274 (1%)

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI-RERDVVCYGAMIVGF 176
            G  +H++++        F  +ALV  Y  F   D+A++VFDE   ER+ V +  ++  +
Sbjct: 25  LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAY 84

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
            +N +  D++ VF +M  S +  T +  S  + A      ++  R +H   V  G +++V
Sbjct: 85  VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDV 144

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
                L+D Y K G V  A  +F E +   + ++WNA+++G    G     +EL   ++ 
Sbjct: 145 FTANALVDMYVKMGRVDIASVIF-EKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 203

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            G  P+ +   ++L A   AG A +  + I    ++   +        L+    +   L+
Sbjct: 204 SGLVPNVFMLSSILKACAGAG-AFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 262

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           DA ++   M    D  +W AL+S  +  G+ D A
Sbjct: 263 DAMKVFDWMSHR-DLILWNALISGCSHGGRHDEA 295


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/566 (35%), Positives = 325/566 (57%), Gaps = 19/566 (3%)

Query: 19  RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSL-RLFNHIPSPNIVSWTALISAH-- 74
           +I+H  A K    +D  + N LI  Y K  L+  ++ R+F+ + +  + SW AL+  +  
Sbjct: 228 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQ 287

Query: 75  -SNSPLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            S+   +L+++L M    T S L P+  T+ SL   C+ +  +  +G  +H  +L+  L 
Sbjct: 288 NSDPRKALDLYLQM----TDSGLDPDWFTIGSLLLACSRMK-SLHYGEEIHGFALRNGLA 342

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
             PF G +L+  Y     P  A+ +FD +  R +V +  MI G++QN    +++++F  M
Sbjct: 343 VDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM 402

Query: 193 RSSDVGS---TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            S  +      + CV GA    ++L+A+   + +H  A+ + L  ++ V + +ID Y K 
Sbjct: 403 LSDGIQPYEIAIMCVCGA---CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKG 459

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  ++R+FD  L   +  +WN ++AGY   G     LELF  +   G  PD+++F  +
Sbjct: 460 GCIGLSQRIFDR-LREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGI 518

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  +AGL  +  ++  +M   + +EP LEHYTC++  +GRAGR++DA R+   MP +P
Sbjct: 519 LMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDP 578

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           D+ +W +LLS   IHG   +  K+  +L+++ P     YV+++N+ +G G+WD+V  VR 
Sbjct: 579 DSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRG 638

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
            MKD  ++K+ G SWIEV GKVH FL GD M    E++      L  +   +GY P    
Sbjct: 639 RMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGS 698

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +LH++ + +K   L  HSEKLA++FGL++ A +G  +R+ KNLRIC DCH + K+IS+VV
Sbjct: 699 VLHDLEEEDKIGILRGHSEKLAISFGLLNTA-KGLPVRVYKNLRICGDCHNAAKFISKVV 757

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
            R+IVVRD  R+H F +G C+CGD W
Sbjct: 758 NRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 184/389 (47%), Gaps = 18/389 (4%)

Query: 19  RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R +H     S+Q   D  +   +IT YS     S S  +F+ +   N+  W A++SA++ 
Sbjct: 125 RRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTR 184

Query: 77  SPL---SLNIF---LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           + L   +++IF   +S+  H      P+  TL  + K CA L    L G  +H ++ K+ 
Sbjct: 185 NELFEDAMSIFSELISVTEHK-----PDNFTLPCVIKACAGLLDLGL-GQIIHGMATKMD 238

Query: 131 LHDKPFCGSALVHFYSRFRSPDNA-KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
           L    F G+AL+  Y +    + A K+VFD +  + V  + A++ G+AQNS    +L ++
Sbjct: 239 LVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLY 298

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
             M  S +    + +   L A + + ++     IHG A+ +GL  +  +G  L+  Y   
Sbjct: 299 LQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICC 358

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G    A+ +FD  +   + ++WN M+AGY+Q G     + LF  +   G  P E + + V
Sbjct: 359 GKPFAAQVLFD-GMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCV 417

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
             A C+   A    K +    ++  L   +   + +I    + G +  ++RI   +  E 
Sbjct: 418 CGA-CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR-EK 475

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLI 398
           D A W  +++   IHG+   A ++ ++++
Sbjct: 476 DVASWNVIIAGYGIHGRGKEALELFEKML 504


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 319/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   +K+ + +D  I   L+  Y+K++ L  ++++F+ +   +++ W ALIS  S+ 
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHG 382

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                + +IF   LR   L    N+ TLA++ K+ ASL  A      +H+L+ K+     
Sbjct: 383 GRHDEAFSIFYG-LRKEGLGV--NRTTLAAVLKSTASLEAASA-TRQVHALAEKIGFIFD 438

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + L+  Y +     +A +VF+E    D++   +MI   +Q      ++ +F +M  
Sbjct: 439 AHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLR 498

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +    + +S  L A A L+A EQ + +H H +      +   G  L+  Y K G + D
Sbjct: 499 KGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIED 558

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F  +L     ++W+AM+ G AQ G     LELF  +   G  P+  +  +VL A  
Sbjct: 559 AELAF-SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN 617

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E++++   MK  + ++   EHY+C+I  +GRAG+L+DA  +  +MPF+ +A+VW
Sbjct: 618 HAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVW 677

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL  S +H   ++     ++L  + P     +V++AN  +  G W+EVA+VRK+MKD 
Sbjct: 678 GALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDS 737

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++KE   SW+EVK KVH F+ GD+ H  T++IY+KL EL +   + GY+P  D  LH++
Sbjct: 738 NIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDL 797

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK   L +HSE+LA+AF L+S  P G  +R+ KNLRICRDCH +FK+IS +V REI+
Sbjct: 798 DRSEKELLLSHHSERLAVAFALLS-TPPGAPIRVKKNLRICRDCHMAFKFISNIVSREII 856

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD+NR+H F +G+C+CGD W
Sbjct: 857 IRDINRFHHFRDGTCSCGDYW 877



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 182/392 (46%), Gaps = 17/392 (4%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---- 73
           R VHA  ++   + D    N L+  Y K   +  +  +F  +P  ++VSW ALIS     
Sbjct: 222 RQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 281

Query: 74  -HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            H +  + L     +L+  +   +PN   L+S+ K CA  + AF  G  +H   +K +  
Sbjct: 282 GHDHRAIEL-----LLQMKSSGLVPNVFMLSSILKACAG-AGAFDLGRQIHGFMIKANAD 335

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              + G  LV  Y++    D+A KVFD +  RD++ + A+I G +   R  ++ S+F  +
Sbjct: 336 SDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGL 395

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R   +G     ++  L++ A L A    R +H  A   G   +  V  GLID Y K   +
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           SDA RVF+E  S  + IA  +M+   +Q       ++LF  +  +G  PD +   ++L A
Sbjct: 456 SDAIRVFEE-CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            C +  A E  K +    ++ +          L+    + G +EDAE    ++P E    
Sbjct: 515 -CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVV 572

Query: 373 VWRALLSFSAIHGKADMASKMGKRLID--INP 402
            W A++   A HG    A ++  R++D  INP
Sbjct: 573 SWSAMIGGLAQHGHGKRALELFGRMVDEGINP 604



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 171/371 (46%), Gaps = 9/371 (2%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           +HA  LKS     S+ N+LI+ YSK      + R+F+ IP P  VSW++L++A+SN+ L 
Sbjct: 26  LHANLLKSGFL-ASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLP 84

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
            +   +           N+  L  + K           G  +H++++        F  +A
Sbjct: 85  RSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQ----LGAQVHAMAMATGFGSDVFVANA 140

Query: 141 LVHFYSRFRSPDNAKKVFDEI-RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           LV  Y  F   D+A++VFDE   ER+ V +  ++  + +N +  D++ VF +M  S +  
Sbjct: 141 LVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T +  S  + A      ++  R +H   V  G +++V     L+D Y K G V  A  +F
Sbjct: 201 TEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIF 260

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +   + ++WNA+++G    G     +EL   ++  G  P+ +   ++L A   AG A
Sbjct: 261 -EKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAG-A 318

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +  + I    ++   +        L+    +   L+DA ++   M    D  +W AL+S
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALIS 377

Query: 380 FSAIHGKADMA 390
             +  G+ D A
Sbjct: 378 GCSHGGRHDEA 388



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 139/297 (46%), Gaps = 10/297 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSP 78
           VHA A+ +   +D  + N L+  Y     +  + R+F+   S  N VSW  L+SA+  + 
Sbjct: 122 VHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKND 181

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               ++ +F  M+        P +   + +   C   S     G  +H++ +++      
Sbjct: 182 QCGDAIQVFGEMVWS---GIQPTEFGFSCVVNACTG-SRNIDAGRQVHAMVVRMGYEKDV 237

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  +ALV  Y +    D A  +F+++ + DVV + A+I G   N     ++ +   M+SS
Sbjct: 238 FTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSS 297

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +   ++ +S  L+A A   A +  R IHG  + +  D +  +G GL+D Y K   + DA
Sbjct: 298 GLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +VFD  +S  + I WNA+++G +  G       +F+ L   G   +  +  AVL +
Sbjct: 358 MKVFDW-MSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 413


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/553 (35%), Positives = 318/553 (57%), Gaps = 17/553 (3%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLS 86
           Q++  + N  I  Y++   L  S R+F+ + +  + SW AL+  +   S+   +L+++L 
Sbjct: 339 QSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQ 398

Query: 87  MLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY 145
           M    T S L P+  T+ SL   C+ +  +  +G  +H  +L+  L   PF G +L+  Y
Sbjct: 399 M----TDSGLDPDWFTIGSLLLACSRMK-SLHYGEEIHGFALRNGLAVDPFIGISLLSLY 453

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS---TMY 202
                P  A+ +FD +  R +V +  MI G++QN    +++++F  M S  +      + 
Sbjct: 454 ICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIM 513

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
           CV GA    ++L+A+   + +H  A+ + L  ++ V + +ID Y K G +  ++R+FD  
Sbjct: 514 CVCGA---CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDR- 569

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
           L   +  +WN ++AGY   G     LELF  +   G  PD+++F  +L A  +AGL  + 
Sbjct: 570 LREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDG 629

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
            ++  +M   + +EP LEHYTC++  +GRAGR++DA R+   MP +PD+ +W +LLS   
Sbjct: 630 LEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCR 689

Query: 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGR 442
           IHG   +  K+  +L+++ P     YV+++N+ +G G+WD+V  VR  MKD  ++K+ G 
Sbjct: 690 IHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGC 749

Query: 443 SWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREA 502
           SWIEV GKVH FL GD M    E++      L  +   +GY P    +LH++ + +K   
Sbjct: 750 SWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGI 809

Query: 503 LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562
           L  HSEKLA++FGL++ A +G  +R+ KNLRIC DCH + K+IS+VV R+IVVRD  R+H
Sbjct: 810 LRGHSEKLAISFGLLNTA-KGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFH 868

Query: 563 RFLNGSCTCGDLW 575
            F +G C+CGD W
Sbjct: 869 HFRDGICSCGDYW 881



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 183/376 (48%), Gaps = 29/376 (7%)

Query: 19  RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R +H     S+Q   D  +   +IT YS     S S  +F+ +   N+  W A++SA++ 
Sbjct: 18  RRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTR 77

Query: 77  SPL---SLNIF---LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           + L   +++IF   +S+  H      P+  TL  + K CA L    L G  +H ++ K+ 
Sbjct: 78  NELFEDAMSIFSELISVTEHK-----PDNFTLPCVIKACAGLLDLGL-GQIIHGMATKMD 131

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           L    F G+AL+  Y +    + A KVF+ + ER++V + ++I GF++N  L +S + F 
Sbjct: 132 LVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFR 191

Query: 191 DM---RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           +M     S V      V+  L   A    +E+   +HG AV  GL+  ++V   LID Y 
Sbjct: 192 EMLVGEESFVPDVATLVT-VLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYS 250

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-----EMRGFAPD 302
           K   +S+A+ +FD+N    N ++WN+M+ GYA++ D   V   F+LL     E      D
Sbjct: 251 KCRFLSEAQLLFDKN-DKKNIVSWNSMIGGYAREED---VCRTFYLLQKMQTEDAKMKAD 306

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           E++ L VL  +C      +S K +     R+ L+         I+A  R G L  +ER+ 
Sbjct: 307 EFTILNVL-PVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVF 365

Query: 363 MAMPFEPDAAVWRALL 378
             M  +   + W ALL
Sbjct: 366 DLMDTKT-VSSWNALL 380



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 175/382 (45%), Gaps = 9/382 (2%)

Query: 21  VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH  A+K    +  + NN LI  YSK   LS +  LF+     NIVSW ++I  ++    
Sbjct: 226 VHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREED 285

Query: 80  SLNIF--LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL-SLHSLSLKLSLHDKPF 136
               F  L  ++        ++ T+ ++   C  L  + L  L  LH  S +  L     
Sbjct: 286 VCRTFYLLQKMQTEDAKMKADEFTILNVLPVC--LERSELQSLKELHGYSWRHGLQSNEL 343

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +A +  Y+R  +  ++++VFD +  + V  + A++ G+AQNS    +L ++  M  S 
Sbjct: 344 VANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG 403

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +    + +   L A + + ++     IHG A+ +GL  +  +G  L+  Y   G    A+
Sbjct: 404 LDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQ 463

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +FD  +   + ++WN M+AGY+Q G     + LF  +   G  P E + + V  A C+ 
Sbjct: 464 VLFD-GMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGA-CSQ 521

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
             A    K +    ++  L   +   + +I    + G +  ++RI   +  E D A W  
Sbjct: 522 LSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNV 580

Query: 377 LLSFSAIHGKADMASKMGKRLI 398
           +++   IHG+   A ++ ++++
Sbjct: 581 IIAGYGIHGRGKEALELFEKML 602


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 211/561 (37%), Positives = 322/561 (57%), Gaps = 13/561 (2%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSNS 77
           +H + +K   +A   + ++LI  YSK+NL   SL+LF+  P  +  +W+++IS  A ++ 
Sbjct: 29  LHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQNDL 88

Query: 78  PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           PL +L  F  MLRH     LP+  TL +  K+  +   +    LSLH+LSLK + H   F
Sbjct: 89  PLPALRFFRRMLRH---GLLPDDHTLPTAAKS-VAALSSLPLALSLHALSLKTAHHHDVF 144

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF--ADMRS 194
            GS+LV  Y++    + A+KVFDE+  ++VV +  MI G++Q     ++L++F  A  + 
Sbjct: 145 VGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQD 204

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            D+    + +S  LR  +     E  + +HG    +  D +  V + LI  Y K G+V  
Sbjct: 205 YDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEG 264

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
             +VF+E + V N   WNAM+   AQ        ELF  +E  G  P+  +FL +L A  
Sbjct: 265 GYKVFEE-VKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACS 323

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  + E     MK  + +EPG +HY  L+  +GRAG+LE+A  +   MP +P  +VW
Sbjct: 324 HAGLVEKGEHCFGLMK-EHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVW 382

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL+   IHG  ++AS +  ++ ++        V+++N  +  GRW+E A  RK+M+D+
Sbjct: 383 GALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARKMMRDQ 442

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++KE G SW+E   +VH F AGDR H +T +IY KL EL EE  + GYV     +L  V
Sbjct: 443 GIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSFVLKEV 502

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK + + YHSE+LA+AFGL++  P    +R++KNLR+C DCH + K+IS+   R I+
Sbjct: 503 DGDEKSQTIRYHSERLAIAFGLITFPPEWP-IRVMKNLRVCGDCHTAIKFISKCTGRVII 561

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+HRF +G CTCGD W
Sbjct: 562 VRDNNRFHRFEDGKCTCGDYW 582



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 126/268 (47%), Gaps = 5/268 (1%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           GL LH   +KL     P     L++FYS+   P ++ K+FD    +    + ++I  FAQ
Sbjct: 26  GLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQ 85

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N   + +L  F  M    +    + +  A ++ A L+++     +H  ++ +    +V V
Sbjct: 86  NDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFV 145

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH--LLEM 296
           G+ L+D Y K G V+ AR+VFDE +   N ++W+ M+ GY+Q G     L LF   L + 
Sbjct: 146 GSSLVDTYAKCGDVNLARKVFDE-MPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQD 204

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
                ++++  +VL  +C+A    E  K +  +  +   +      + LIS   + G +E
Sbjct: 205 YDIRVNDFTLSSVLR-VCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVE 263

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIH 384
              ++   +    +  +W A+L   A H
Sbjct: 264 GGYKVFEEVKVR-NLGMWNAMLIACAQH 290


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/564 (34%), Positives = 316/564 (56%), Gaps = 16/564 (2%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           + VHA+ + +   D   +  +LI  Y+    +  + R+F+++   ++VSWT +I  ++  
Sbjct: 279 KAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAEN 338

Query: 76  -NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA---SLSHAFLFGLSLHSLSLKLSL 131
            N   +  +F +M         P++ T   +   CA   +L+HA      +HS       
Sbjct: 339 GNIEDAFGLFATMQEE---GIQPDRITYMHIMNACAISANLNHA----REIHSQVDIAGF 391

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                  +ALVH Y++  +  +A++VFD +  RDVV + AMI  + +N    ++   F  
Sbjct: 392 GTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHL 451

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+ S++          L A   L A++    I+  A+ + L  +V +G  LI    K G 
Sbjct: 452 MKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGS 511

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           V  AR +FD  +   + I WNAM+ GY+  G+    L LF  +    F P+  +F+ VL+
Sbjct: 512 VERARYIFD-TMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLS 570

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A   AG   E  ++   +     + P ++ Y C++  +GRAG L++AE +  +MP +P +
Sbjct: 571 ACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTS 630

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           ++W +LL    IHG  D+A +  +R + I+PYD + YV ++++ +  G W+ VA+VRKVM
Sbjct: 631 SIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVM 690

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           + R +RKE G +WIEV GKVH F+  DR H    +IY +LA LM   +R GY+P+   +L
Sbjct: 691 ESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVL 750

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H+VG+++K EA+ YHSEKLA+A+G++S  P G  +RI KNLR+C DCH + K+IS+V  R
Sbjct: 751 HDVGEQQKEEAISYHSEKLAIAYGVLS-LPSGTPIRIYKNLRVCSDCHSASKFISKVTGR 809

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+ RD +R+H F +G C+CGD W
Sbjct: 810 EIIARDASRFHHFKDGVCSCGDYW 833



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 193/428 (45%), Gaps = 10/428 (2%)

Query: 3   LDLNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPS 61
           LD    P   N   +   VHA+ + +   +D  I   L++ Y K   +  + ++F+ +  
Sbjct: 165 LDACSSPAGLNWGKE---VHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHI 221

Query: 62  PNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
            ++ ++  ++  ++ S      F    R   +   PN+ +  S+   C +   A  +G +
Sbjct: 222 RDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWT-PEALAWGKA 280

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H+  +   L D     ++L+  Y+   S + A++VFD ++ RDVV +  MI G+A+N  
Sbjct: 281 VHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGN 340

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
           + D+  +FA M+   +          + A A  A +   R IH    ++G   +++V T 
Sbjct: 341 IEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTA 400

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           L+  Y K G + DAR+VFD  +   + ++W+AM+  Y + G  +   E FHL++     P
Sbjct: 401 LVHMYAKCGAIKDARQVFDA-MPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEP 459

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           D  +++ +L A  + G A +    I    ++  L   +     LI    + G +E A  I
Sbjct: 460 DGVTYINLLNACGHLG-ALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYI 518

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
              M    D   W A++   ++HG A  A  +  R++      +S  V    VLS   R 
Sbjct: 519 FDTM-VRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNS--VTFVGVLSACSRA 575

Query: 422 DEVAEVRK 429
             V E R+
Sbjct: 576 GFVDEGRR 583



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 174/394 (44%), Gaps = 9/394 (2%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N LI  YS    ++ + ++F+ + +  +V+W ALI+ ++        F    +       
Sbjct: 96  NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLE 155

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+  T  S+   C+S +    +G  +H+  +          G+ALV  Y +  S D+A++
Sbjct: 156 PSIITFLSVLDACSSPA-GLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQ 214

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VFD +  RDV  +  M+ G+A++     +  +F  M+   +          L       A
Sbjct: 215 VFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEA 274

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +   + +H   + +GL  ++ V T LI  Y   G +  ARRVFD N+ V + ++W  M+ 
Sbjct: 275 LAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFD-NMKVRDVVSWTVMIE 333

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GYA+ G+      LF  ++  G  PD  +++ ++ A   +     + +   ++ +     
Sbjct: 334 GYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIA-GFG 392

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK---M 393
             L   T L+    + G ++DA ++  AMP   D   W A++     +G    A +   +
Sbjct: 393 TDLLVSTALVHMYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGAYVENGYGTEAFETFHL 451

Query: 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            KR  +I P D   Y+ + N    +G  D   E+
Sbjct: 452 MKRS-NIEP-DGVTYINLLNACGHLGALDVGMEI 483



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 4/293 (1%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           + RT   LF+ C  L  A L G  +    ++       +  + L+  YS   +   A+++
Sbjct: 56  DSRTYVKLFQRCTELRDAAL-GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQI 114

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           FD +  + VV + A+I G+AQ   + ++ ++F  M    +  ++      L A +  A +
Sbjct: 115 FDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGL 174

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
              + +H   V +G   +  +GT L+  Y K G + DAR+VFD  L + +   +N M+ G
Sbjct: 175 NWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFD-GLHIRDVSTFNVMVGG 233

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           YA+ GD     ELF+ ++  G  P++ SFL++L   C    A    K +    +   L  
Sbjct: 234 YAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDG-CWTPEALAWGKAVHAQCMNAGLVD 292

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            +   T LI      G +E A R+   M    D   W  ++   A +G  + A
Sbjct: 293 DIRVATSLIRMYTTCGSIEGARRVFDNMKVR-DVVSWTVMIEGYAENGNIEDA 344


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 203/556 (36%), Positives = 297/556 (53%), Gaps = 43/556 (7%)

Query: 21  VHARALKSSQADRSIYN-NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   +       I N  L  +Y+    L YS+ LF    +P++  WTA+I  H+    
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHA---- 104

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                   LR   +S          LF T    S   L                     +
Sbjct: 105 --------LRGDVVS-------AQQLFDTMPEKSLVSL---------------------T 128

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           A++  Y++    D A+ +FD + ERD VC+  MI G+ QN    ++L +F  M  +    
Sbjct: 129 AMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKP 188

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               V   L A  +L A+E  R +H +   +G+  NV VGT L+D Y K G + DAR VF
Sbjct: 189 NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVF 248

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D+ +   + +AWN+M+ GYA  G     L+LF  +   G  P   +F+ +L+A  ++G  
Sbjct: 249 DK-IDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWV 307

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E      +MK  Y +EP +EHY C+++ +GRAG +E A  +   M  EPD  +W  LL 
Sbjct: 308 TEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLG 367

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +HGK  +  K+ + L+D N  +   Y++++N+ + VG WD VA +R +MKD  V+KE
Sbjct: 368 ACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKE 427

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S IEV  KVH FLAG   H + ++IY  L E+    +  GY P  D +LH++G+ EK
Sbjct: 428 PGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEK 487

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             +L  HSEKLA+AFGL++  P G T++IVKNLR+C DCHE  K IS++  R+IVVRD N
Sbjct: 488 ERSLEVHSEKLAIAFGLINTQP-GTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRN 546

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F+NGSC+CGD W
Sbjct: 547 RFHHFVNGSCSCGDYW 562


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 202/573 (35%), Positives = 309/573 (53%), Gaps = 24/573 (4%)

Query: 21  VHARALKSSQ-ADRSIYNNLITNYSK--------------SNLLSYSLRLFNHIPSPNIV 65
           +HA AL+S   ADR   N L+  Y K              + +L    ++F+ +P  ++V
Sbjct: 80  LHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVV 139

Query: 66  SWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
           SW  L+   + S     +L +   M R       P+  TL+S+    A  +     G+ L
Sbjct: 140 SWNTLVLGCAESGRHGEALGLVREMWRD---GCKPDSFTLSSVLPIFAEGADVRR-GMEL 195

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           H  + +   HD  F GS+L+  Y+     D + KVFD +  RD + + +M+ G AQN  +
Sbjct: 196 HGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSV 255

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
            ++L +F  M  S +       S  + A   LA++   + +H + +  G D NV + + L
Sbjct: 256 DEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSL 315

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           ID Y K G VS ARR+FD  +   + ++W AM+ G+A  G     L LF  +E+    P+
Sbjct: 316 IDMYCKCGNVSIARRIFDR-IQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPN 374

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
             +FLAVLTA  +AGL  +  K+   M   Y + P LEH+  L   +GR G+LE+A    
Sbjct: 375 HITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFI 434

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             M  +P A+VW  LL    +H    +A ++ K++ D+ P    +++I++N  S  GRW+
Sbjct: 435 SGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWN 494

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
           E A +RK M+ + ++KE   SWIEVK K HVF+A D+ H   E I   L    E+  R G
Sbjct: 495 EAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQG 554

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           YVP  D++  ++ + +K   L  HSEKLA+ FG++S  P G T+R++KNLR+C DCH   
Sbjct: 555 YVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIIS-TPPGTTIRVMKNLRVCVDCHTVT 613

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           K+IS++V REIV+RD NR+H F +G C+CGD W
Sbjct: 614 KFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 315/572 (55%), Gaps = 13/572 (2%)

Query: 13  NTSTDPRIVHARALKSSQADRSIYNNL--------ITNYSKSNLLSYSLRLFNHIPSPNI 64
           + S   R   A+ L+     RS Y  +        I + S S  +    ++F  +P  ++
Sbjct: 206 DVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDL 265

Query: 65  VSWTALISAHSNSPLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLH 123
           VSW  +I+ ++ + L     L+M+R    + L P+  TL+S+    A  +     G  +H
Sbjct: 266 VSWNTIIAGNARNGLYGET-LTMVREMGGANLKPDSFTLSSVLPLIAE-NVDISKGKEIH 323

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
             S++  L  + +  S+L+  Y++     ++ +VF  + ERD + + ++I G  QN    
Sbjct: 324 GCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFD 383

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           + L  F  M  + +    Y  S  + A A L  +   + +HG+   +G D N+ + + L+
Sbjct: 384 EGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLV 443

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           D Y K G +  AR++FD  + + + ++W AM+ G A  G     +ELF  ++  G  P+ 
Sbjct: 444 DMYAKCGNIRTARQIFDR-MRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNY 502

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            +F+AVLTA  +AGL  E+ K+   M + + + PG+EHY  +   +GRAGRLE+A     
Sbjct: 503 VAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFIC 562

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            MP  P  +VW  LLS   +H   DMA K+  R+++++P +  AY+++AN+ S   RW E
Sbjct: 563 GMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKE 622

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
            A+ R  ++   +RK    SWIEV+ KV+ F+AGD  H   E I   +  LME  E+ GY
Sbjct: 623 AAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGY 682

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           VP   E+ H+V + +K+  +  HSE+LA+ FG+++  P G T+R+ KNLR+C DCH + K
Sbjct: 683 VPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIIN-TPAGTTIRVTKNLRVCTDCHTATK 741

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +IS++V REIVVRD +R+H F NG+C+CGD W
Sbjct: 742 FISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 170/405 (41%), Gaps = 36/405 (8%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           L + P    + +  + +HA+ LK   +     + L++ YS  NLL  SLRLFN +  P  
Sbjct: 14  LLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFPPA 73

Query: 65  VSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
           ++W ++I  +++  L   SL  F+ ML        P+     S+ K CA L    L G S
Sbjct: 74  LAWKSVIRCYTSHGLPHKSLGSFIGML---ASGLYPDHNVFPSVLKACAMLMDLNL-GES 129

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN-------AKKVFDEIRERDVVCYGAMIV 174
           LH   +++ L    + G+AL++ YS+ R           A +V DE+ ER      A ++
Sbjct: 130 LHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVL 189

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
              Q  ++ D  +   D+           +    +  +E   ME C              
Sbjct: 190 VGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACN------------- 236

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
              +G  + D    +  V   R++F E +   + ++WN ++AG A+ G     L +   +
Sbjct: 237 ---LGQQIKD-ISHSMSVDSVRKIF-EMMPEKDLVSWNTIIAGNARNGLYGETLTMVREM 291

Query: 295 EMRGFAPDEYSFLAVLTALC-NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
                 PD ++  +VL  +  N  ++   E  I    +R  L+  +   + LI    +  
Sbjct: 292 GGANLKPDSFTLSSVLPLIAENVDISKGKE--IHGCSIRQGLDAEVYVASSLIDMYAKCT 349

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           R+ D+ R+   +  E D   W ++++    +G  D   K  ++++
Sbjct: 350 RVVDSYRV-FTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQML 393


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/556 (34%), Positives = 309/556 (55%), Gaps = 4/556 (0%)

Query: 21  VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA  L+S+       NN L+  YSK + L    RLF+ +P  + VS+  +I+A++ +  
Sbjct: 258 VHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQC 317

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +  +         L F       A++     SL    + G  +H+  + L L  +   G+
Sbjct: 318 AATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHI-GKQIHAQLVLLGLASEDLLGN 376

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  YS+    D AK  F    E+  + + A+I G+ QN +  ++L +F+DMR + +  
Sbjct: 377 ALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRP 436

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                S  ++A++ LA +   R +H + + SG   +V  G+ L+D Y K G + +A R F
Sbjct: 437 DRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTF 496

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           DE +   NSI+WNA+++ YA  G+    +++F  +   GF PD  +FL+VL A  + GLA
Sbjct: 497 DE-MPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLA 555

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E  K+   MK +Y + P  EHY C+I  +GR G     +++ + MPF+ D  +W ++L 
Sbjct: 556 DECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILH 615

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IHG  ++A     +L  + P D + YVI++N+ +  G+W++ A V+K+M+DR VRKE
Sbjct: 616 SCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKE 675

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SW+E+K K++ F + D      ++I  +L  L +E ++ GY P     LH V    K
Sbjct: 676 SGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELK 735

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
            E+L YHSE+LA+AF L++  P G  +RI+KNL  C DCH   K IS++V R+I+VRD  
Sbjct: 736 LESLKYHSERLAIAFALMN-TPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSR 794

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 795 RFHHFKDGVCSCGDYW 810



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 173/378 (45%), Gaps = 21/378 (5%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NS 77
           ARA+      ++I+  N +++ YS S  L  +  LF   P  N  +WT ++ AH+    +
Sbjct: 62  ARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRT 121

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L++F +ML       +P++ T+ ++               SLH  ++K  L    F 
Sbjct: 122 SDALSLFRAMLGE---GVIPDRVTVTTVLNLPGCTVP------SLHPFAIKFGLDTHVFV 172

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + L+  Y +      A++VF E+ ++D V Y AM++G ++      +L +FA MR + +
Sbjct: 173 CNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGI 232

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +T +  S  L  AA +A +     +H   + S    NV V   L+D Y K   + D RR
Sbjct: 233 PATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRR 292

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FDE +   +++++N ++A YA     +TVL LF  ++  GF   +   L   T L  AG
Sbjct: 293 LFDE-MPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF---DRQVLPYATMLSVAG 348

Query: 318 LAGESE--KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
              +    K I    V   L         LI    + G L DA +   +   E  A  W 
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGML-DAAKSNFSNRSEKSAISWT 407

Query: 376 ALLSFSAIHGKADMASKM 393
           AL++    +G+ + A ++
Sbjct: 408 ALITGYVQNGQHEEALQL 425


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/561 (34%), Positives = 316/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAH 74
           R VH  ALK+    D  +   LI  YSK   +  +  LF++    ++ SW A++   +  
Sbjct: 419 RQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVS 478

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            N   +L +F  M      +   +Q T A+  K    L      G  +H++ +K+  H  
Sbjct: 479 DNYREALRLFSLMHERGEKA---DQITFANAAKAAGCLVR-LQQGKQIHAVVIKMRFHYD 534

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  S ++  Y +     +A+KVF++I   D V +  +I G  +N     +L  +  MR 
Sbjct: 535 LFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRL 594

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + V    Y  +  ++A + L A+EQ + IH + +      +  V T L+D Y K G + D
Sbjct: 595 AGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIED 654

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F   ++  +   WNAM+ G AQ G+    L  F+ ++ RG  PD  +F+ VL+A  
Sbjct: 655 AYGLF-RRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACS 713

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++GL  ++ K  + M+  Y +EP +EHY+CL+ A+ RAG +++AE++  +MPFE  A ++
Sbjct: 714 HSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMY 773

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           R LL+   + G  +   ++ ++L  ++P D +AYV+++N+ +   +W+     R +MK  
Sbjct: 774 RTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRV 833

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V+KE G SWI++K KVH+F+AGDR HE T+ IY K+  +M+  +  GYVP  +  L ++
Sbjct: 834 NVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDI 893

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + +K  AL YHSEKLA+A+GL+   P   TLR++KNLR+C DCH + KYIS V +REIV
Sbjct: 894 EEEDKESALSYHSEKLAIAYGLMK-TPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIV 952

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD NR+H F +G C+CGD W
Sbjct: 953 LRDANRFHHFRSGICSCGDYW 973



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 182/362 (50%), Gaps = 13/362 (3%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
           S+ N+ I  Y K+  ++Y+ R+F  +   +++SW  +IS  + S L   SL +F+ +LR 
Sbjct: 333 SVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRS 392

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
                LP+Q T+ S+ + C+SL  ++  G  +H+ +LK  +    F  +AL+  YS+   
Sbjct: 393 ---GLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGK 449

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            + A+ +F      D+  + AM+ GF  +    ++L +F+ M      +     + A +A
Sbjct: 450 MEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKA 509

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
           A  L  ++Q + IH   +      ++ V +G++D Y K G +  AR+VF++ +   + +A
Sbjct: 510 AGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQ-IPSPDDVA 568

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER-- 328
           W  +++G  + G++   L  +H + + G  PDEY+F A L   C+   A E  K I    
Sbjct: 569 WTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTF-ATLVKACSLLTALEQGKQIHANI 627

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           MK+    +P +   T L+    + G +EDA  +   M      A+W A++   A HG A+
Sbjct: 628 MKLNCAFDPFV--MTSLVDMYAKCGNIEDAYGLFRRMNTRS-VALWNAMIVGLAQHGNAE 684

Query: 389 MA 390
            A
Sbjct: 685 EA 686



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 166/362 (45%), Gaps = 19/362 (5%)

Query: 50  SYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLP-NQRTLASL 105
           +Y+ +LF      ++  W   +S++  +     +++ F  M++    S +P +  T   +
Sbjct: 248 AYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIK----SRVPCDSLTYIVI 303

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
               ASL+H  L G  +H   ++          ++ ++ Y +  S + A+++F +++E D
Sbjct: 304 LSVVASLNHLEL-GKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVD 362

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC--RVI 223
           ++ +  +I G A++     SL +F D+  S +    + ++  LRA + L     C  R +
Sbjct: 363 LISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEE-SYCVGRQV 421

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H  A+ +G+  +  V T LID Y K G + +A  +F  N    +  +WNAMM G+    +
Sbjct: 422 HTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLF-HNQDGFDLASWNAMMHGFTVSDN 480

Query: 284 QSTVLELFHLLEMRGFAPDEYSFL-AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
               L LF L+  RG   D+ +F  A   A C   L  +  K I  + ++ +    L   
Sbjct: 481 YREALRLFSLMHERGEKADQITFANAAKAAGCLVRL--QQGKQIHAVVIKMRFHYDLFVI 538

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA--SKMGKRLIDI 400
           + ++    + G ++ A ++   +P  PD   W  ++S    +G+ + A  +    RL  +
Sbjct: 539 SGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGV 597

Query: 401 NP 402
            P
Sbjct: 598 QP 599



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 12/223 (5%)

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMI 173
            + G   H++ +   L+   +  + L+  Y++  S  +A+K+FD     +RD+V Y A++
Sbjct: 29  LILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAIL 88

Query: 174 VGFAQNSRLVD------SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
             +A    L D      +  +F  +R S + +T + +S   +      +      + G+A
Sbjct: 89  AAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYA 148

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
           V  GL  +V V   L++ Y K   + +AR +FD  + V + + WN MM  Y + G    V
Sbjct: 149 VKIGLQWDVFVAGALVNIYAKFQRIREARVLFDR-MPVRDVVLWNVMMKAYVEMGAGDEV 207

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           L LF      G  PD    ++V T L   G     E+ +E+++
Sbjct: 208 LGLFSAFHRSGLRPD---CVSVRTILMGVGKKTVFERELEQVR 247



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 151/374 (40%), Gaps = 63/374 (16%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN--IVSWTALISAHSNSPL---------S 80
           DR + NNLIT Y+K   L  + +LF+  P  +  +V++ A+++A++++           +
Sbjct: 47  DRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEA 106

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL-----SLHSLSLKLSLHDKP 135
            +IF  +LR   +  L  + TL+ LFK C       L+G      +L   ++K+ L    
Sbjct: 107 FHIF-RLLRQSVM--LTTRHTLSPLFKLC------LLYGSPSASEALQGYAVKIGLQWDV 157

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F   ALV+ Y++F+    A+ +FD +  RDVV +  M+  + +     + L +F+    S
Sbjct: 158 FVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRS 217

Query: 196 ----DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
               D  S    + G  +       +EQ R       V   D +V V             
Sbjct: 218 GLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTV------------- 264

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
                              WN  ++ Y Q G+    ++ F  +       D  +++ +L+
Sbjct: 265 -------------------WNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILS 305

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
            + +     E  K I    VR+  +  +      I+   +AG +  A R+   M  E D 
Sbjct: 306 VVASLNHL-ELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMK-EVDL 363

Query: 372 AVWRALLSFSAIHG 385
             W  ++S  A  G
Sbjct: 364 ISWNTVISGCARSG 377


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 193/552 (34%), Positives = 308/552 (55%), Gaps = 9/552 (1%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNI 83
           K  Q D  +   +I  Y+K   +  +  +F+ +   N++SW+A+I+A   H     +L++
Sbjct: 160 KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 219

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  ML   +   LP++ TLASL   C+ L +    G  +H +  K  L    F  +ALV 
Sbjct: 220 FRMML---SSGMLPDKITLASLLYACSDLKN-LQMGRLIHHIVYKFGLDLDHFVCAALVD 275

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y + R  ++A+ +FD++ ERD+V +  MI G+A+     +SL +F  MR   V      
Sbjct: 276 MYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVA 335

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           +   + A A+L AM + R I  +        +VI+GT +ID + K G V  AR +FD  +
Sbjct: 336 MVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFD-RM 394

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              N I+W+AM+A Y   G     L+LF ++   G  P++ + +++L A  +AGL  E  
Sbjct: 395 EEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGL 454

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           ++   M   Y +   ++HYTC++  +GRAGRL++A ++  +M  E D  +W A L     
Sbjct: 455 RFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRT 514

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           H    +A K    L+++ P +   Y++++N+ +  GRW++VA+ R +M  RR++K  G +
Sbjct: 515 HKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWT 574

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
           WIEV  K H F  GD  H R+++IY  L  L  + E +GYVP  + +LH+V +  K   L
Sbjct: 575 WIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGIL 634

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
           + HSEKLA+AFGL++  P    +RI+KNLR+C DCH   K +S +  R I+VRD NR+H 
Sbjct: 635 YSHSEKLAIAFGLIA-TPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHH 693

Query: 564 FLNGSCTCGDLW 575
           F  G+C+CGD W
Sbjct: 694 FKEGACSCGDYW 705



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 147/294 (50%), Gaps = 8/294 (2%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+  TL  + + C  L +    G  +H +  K  L    F  +ALV  Y + R  ++A+ 
Sbjct: 28  PDNYTLPFVIRACRDLKN-LQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARF 86

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +FD+++ERD+V +  MI G+A+  +  +SL +F  MR   V      +   + A A+L A
Sbjct: 87  LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGA 146

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           M + R+I  +        +VI+GT +ID Y K G V  AR +FD  +   N I+W+AM+A
Sbjct: 147 MHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFD-RMEEKNVISWSAMIA 205

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
            Y   G     L+LF ++   G  PD+ +  ++L A C+     +  + I  +  ++ L+
Sbjct: 206 AYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYA-CSDLKNLQMGRLIHHIVYKFGLD 264

Query: 337 PGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
             L+H+ C  L+   G+   +EDA  +   MP E D   W  ++   A  G A+
Sbjct: 265 --LDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGGYAECGNAN 315



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 190/417 (45%), Gaps = 44/417 (10%)

Query: 10  QPQNTSTDPRIVHARALKSSQADRSIYN---------------NLITNYSKSNLLSYSLR 54
           +P N +    I   R LK+ Q  R I++                L+  Y K   +  +  
Sbjct: 27  RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARF 86

Query: 55  LFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           LF+ +   ++V+WT +I  ++    +  SL +F  M        +P++  + ++   CA 
Sbjct: 87  LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREE---GVVPDKVAMVTVVFACAK 143

Query: 112 LS---HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
           L     A +    +     +L +      G+A++  Y++    ++A+++FD + E++V+ 
Sbjct: 144 LGAMHKARIIDDYIQRKKFQLDV----ILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 199

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           + AMI  +  + +   +L +F  M SS +      ++  L A ++L  ++  R+IH    
Sbjct: 200 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVY 259

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
             GLD +  V   L+D YGK   + DAR +FD+ +   + + W  M+ GYA+ G+ +  L
Sbjct: 260 KFGLDLDHFVCAALVDMYGKCREIEDARFLFDK-MPERDLVTWTVMIGGYAECGNANESL 318

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES---EKWIERMKVRYKLEPGLEHYTCL 345
            LF  +   G  PD+ + + V+ A    G   ++   + +I+R K +  +  G    T +
Sbjct: 319 VLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG----TAM 374

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
           I    + G +E A  I   M  E +   W A+++    HG+       G++ +D+ P
Sbjct: 375 IDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ-------GRKALDLFP 423



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           M+ GFA+    ++    F ++         Y +   +RA  +L  ++  R+IH      G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           LD +  V   L+D Y K   + DAR +FD+ +   + + W  M+ GYA+ G  +  L LF
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDK-MQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGES---EKWIERMKVRYKLEPGLEHYTCLISA 348
             +   G  PD+ + + V+ A    G   ++   + +I+R K +  +  G    T +I  
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDM 175

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             + G +E A  I   M  E +   W A+++    HG+   A
Sbjct: 176 YAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKA 216


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 191/573 (33%), Positives = 308/573 (53%), Gaps = 20/573 (3%)

Query: 18  PRIVHARALKSSQADRSIY------------NNLITNYSKSNLLSYSLRLFNHIPSPNIV 65
           P I  A AL   +A  + Y              L+  Y+K +LL Y+ ++FN +   N V
Sbjct: 218 PTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDV 277

Query: 66  SWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
            W+A+I     H +   +L ++  ML    L+  P   TLA++ + CA L+     G  L
Sbjct: 278 CWSAMIGGYVLHDSISDALALYDDMLCIYGLN--PTPATLATMLRACAQLT-DLKRGKKL 334

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           H   +K  +      G++L+  Y++    DNA    DE+  +D V Y A+I G  QN   
Sbjct: 335 HCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYA 394

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
             +L +F  M+SS +   +  +   L A + LAA++     HG+ VV G   +  +   +
Sbjct: 395 EKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAI 454

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           ID Y K G ++ +R +FD  +   + I+WN M+ GY   G     L LF  L+  G  PD
Sbjct: 455 IDMYSKCGKITISREIFDR-MQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPD 513

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           + + +AVL+A  ++GL  E + W   M   + ++P + HY C++  + RAG L++A    
Sbjct: 514 DVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFI 573

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             MPF P+  +W ALL+    H   +M  ++ K++  + P     +V+++N+ S VGRWD
Sbjct: 574 QRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWD 633

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
           + A +R + +    +K  G SW+E+ G +HVF+ G + H ++  I  KL EL+ + ++LG
Sbjct: 634 DAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLG 693

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           Y      +LH+V + EK + L YHSEK+A+AFG+++ +P  + L + KNLRIC DCH + 
Sbjct: 694 YRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRIL-VTKNLRICVDCHSAI 752

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           K+I+ + EREI VRD +R+H F +G C C D W
Sbjct: 753 KFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 188/411 (45%), Gaps = 11/411 (2%)

Query: 19  RIVHARA-LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN--IVSWTALISAHS 75
           R++H  A +     D  +   L+  Y+K   L  +  LFN I   +  IV+W A+I+A S
Sbjct: 127 RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFS 186

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              L      S+ +       PN  TL S+  T    ++A   G ++H+  ++    D  
Sbjct: 187 FHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQ-ANALHQGKAIHAYYIRNFFFDNV 245

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS- 194
              +AL+  Y++      A+K+F+ + +++ VC+ AMI G+  +  + D+L+++ DM   
Sbjct: 246 VLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCI 305

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +  T   ++  LRA A+L  +++ + +H H + SG+D +  VG  LI  Y K GI+ +
Sbjct: 306 YGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDN 365

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A    DE ++  ++++++A+++G  Q G     L +F  ++  G AP   + +A+L A C
Sbjct: 366 AVGFLDEMIAK-DTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPA-C 423

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +   A +         V             +I    + G++  +  I   M    D   W
Sbjct: 424 SHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQ-NRDIISW 482

Query: 375 RALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDE 423
             ++    IHG    A  + + L  + + P DD   + V +  S  G   E
Sbjct: 483 NTMIIGYGIHGLCVEALSLFQELQALGLKP-DDVTLIAVLSACSHSGLVTE 532



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 170/365 (46%), Gaps = 15/365 (4%)

Query: 47  NLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPL--SLNIFLSMLRHPTLSFLPNQRTLA 103
           N +  +  +F+ IP P++V W  +I  ++ + P   S+ ++L ML+   L   P   T  
Sbjct: 55  NEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQ---LGVTPTNFTFP 111

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI-- 161
            L K C+SL  A   G  +H+ +  L L    +  +AL+H Y++      A+ +F+ I  
Sbjct: 112 FLLKACSSLQ-ALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISH 170

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
           ++RD+V + AMI  F+ ++    ++   A M+ + V      +   L    +  A+ Q +
Sbjct: 171 QDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGK 230

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
            IH + + +    NV++ T L+D Y K  ++  AR++F+  ++  N + W+AM+ GY   
Sbjct: 231 AIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFN-TVNKKNDVCWSAMIGGYVLH 289

Query: 282 GDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
              S  L L+  +L + G  P   +   +L A C      +  K +    ++  ++    
Sbjct: 290 DSISDALALYDDMLCIYGLNPTPATLATMLRA-CAQLTDLKRGKKLHCHMIKSGMDLDTT 348

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID- 399
               LIS   + G +++A      M    D   + A++S    +G A+ A  + +++   
Sbjct: 349 VGNSLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSS 407

Query: 400 -INPY 403
            I PY
Sbjct: 408 GIAPY 412


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 190/554 (34%), Positives = 310/554 (55%), Gaps = 3/554 (0%)

Query: 22   HARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSL 81
            H+R+  +S  +  + N+L+  YSK + L    RLF+ +P  + VS+  +I+A++ +  + 
Sbjct: 458  HSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAA 517

Query: 82   NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSAL 141
             +         L F       A++     SL    + G  +H+  + L L  +   G+AL
Sbjct: 518  TVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHI-GKQIHAQLVLLGLASEDLLGNAL 576

Query: 142  VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201
            +  YS+    D AK  F    E+  + + A+I G+ QN +  ++L +F+DMR + +    
Sbjct: 577  IDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDR 636

Query: 202  YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
               S  ++A++ LA +   R +H + + SG   +V  G+ L+D Y K G + +A R FDE
Sbjct: 637  ATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDE 696

Query: 262  NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
             +   NSI+WNA+++ YA  G+    +++F  +   GF PD  +FL+VL A  + GLA E
Sbjct: 697  -MPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADE 755

Query: 322  SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
              K+   MK +Y + P  EHY C+I  +GR G     +++ + MPF+ D  +W ++L   
Sbjct: 756  CMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSC 815

Query: 382  AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
             IHG  ++A     +L  + P D + YVI++N+ +  G+W++ A V+K+M+DR VRKE G
Sbjct: 816  RIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESG 875

Query: 442  RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
             SW+E+K K++ F + D      ++I  +L  L +E ++ GY P     LH V    K E
Sbjct: 876  YSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLE 935

Query: 502  ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
            +L YHSE+LA+AF L++  P G  +RI+KNL  C DCH   K IS++V R+I+VRD  R+
Sbjct: 936  SLKYHSERLAIAFALMN-TPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRF 994

Query: 562  HRFLNGSCTCGDLW 575
            H F +G C+CGD W
Sbjct: 995  HHFKDGVCSCGDYW 1008



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 131/282 (46%), Gaps = 31/282 (10%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NS 77
           ARA+      ++I+  N +++ YS S  L  +  LF   P  N  +WT ++ AH+    +
Sbjct: 276 ARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRT 335

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L++F +ML       +P++ T+ ++               SLH  ++K  L    F 
Sbjct: 336 SDALSLFRAMLGE---GVIPDRVTVTTVLNLPGCTVP------SLHPFAIKFGLDTHVFV 386

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + L+  Y +      A++VF E+ ++D V Y AM++G ++      +L +FA MR    
Sbjct: 387 CNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMR---- 442

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                      RA      +   +  H  +  + +  NV V   L+D Y K   + D RR
Sbjct: 443 -----------RAGYSRHPLHLLQYSHSRSRSTSV-LNVFVNNSLLDFYSKCDCLDDMRR 490

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           +FDE +   +++++N ++A YA     +TVL LF  ++  GF
Sbjct: 491 LFDE-MPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 531


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 191/565 (33%), Positives = 328/565 (58%), Gaps = 18/565 (3%)

Query: 19  RIVHARAL-KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAH 74
           +  HA+ L    + D    N LI  YSK   + ++ ++F+ +PS ++VSW  +I   + +
Sbjct: 84  KACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQN 143

Query: 75  SNSPLSLNIFLSMLRHPTLSFLP-NQRTLASLFKTCAS---LSHAFLFGLSLHSLSLKLS 130
                +L++ L M R  T    P ++ T++S+   CA+   LS   L    LH+ ++K +
Sbjct: 144 GEENEALDLLLQMQREGT----PFSEFTISSVLCACAAKCALSECQL----LHAFAIKAA 195

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           +    F  +AL+  Y++     +A  VF+ + +R VV + +M  G+ QN     +L++F 
Sbjct: 196 MDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFR 255

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
               + +    + +S  + A A LAAM + + ++     SG   N+ V + LID Y K G
Sbjct: 256 KAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCG 315

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            + ++ +VF  ++   N + WNAM++G ++      V+ LF  ++  G +P++ +F++VL
Sbjct: 316 GIEESYKVF-RDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVL 374

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  + GL  + +K+ + M   + L P + HY+C++  + RAG++ +A  +   +PF   
Sbjct: 375 SACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNAS 434

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A++W +LL+    HG  ++A    K+L DI P++   Y++++N+ +  G+WDEVA++RK+
Sbjct: 435 ASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKL 494

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           +K+  V+KE G+SWIE+K KVH+F+ G+R H +  +IY+KL E+M+E ++LGY       
Sbjct: 495 LKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHD 554

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           LH VG+  K+E L +HSEKLA   GL+   P    +RI+KNLRIC DCH   K  S+   
Sbjct: 555 LHQVGESIKQELLRHHSEKLAFTMGLLFLPPNA-PIRIMKNLRICGDCHSFMKLASKFFC 613

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           R+++VRD NR+H F NG C+CGD W
Sbjct: 614 RDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 156/328 (47%), Gaps = 12/328 (3%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           + K CA      L G + H+  L + L       + L++ YS+  S D A++VFDE+  R
Sbjct: 70  ILKLCAK-RKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSR 128

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
            +V +  MI    QN    ++L +   M+      + + +S  L A A   A+ +C+++H
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLH 188

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
             A+ + +D NV V T L+D Y K G++ DA  VF E++   + + W++M AGY Q    
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVF-ESMPDRSVVTWSSMAAGYVQNEMY 247

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE-KWIERMKVRYKLEPGLEHYT 343
              L LF      G   D++   +V+ A   AGLA   E K +  +  +      +   +
Sbjct: 248 EQALALFRKAWETGLKHDQFLMSSVICAC--AGLAAMIEGKQVNALLSKSGFCSNIFVAS 305

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL--IDIN 401
            LI    + G +E++ ++   +  + +  +W A++S  + H ++     + +++  + ++
Sbjct: 306 SLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLS 364

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           P D    V   +VLS  G    V + +K
Sbjct: 365 PND----VTFVSVLSACGHMGLVKKGQK 388


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 183/555 (32%), Positives = 309/555 (55%), Gaps = 10/555 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   K   + D ++ N L+T Y K+  +    +L+  +   +++SW A +S   +  +
Sbjct: 437 IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGM 496

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               L IF  ML      F+PN  T  S+  +C+ L     +G  +H+  +K  L D  F
Sbjct: 497 YDRPLTIFYHMLEE---GFIPNMYTFISILGSCSCLFDVH-YGRQVHAHIIKNQLDDNNF 552

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +AL+  Y++    ++A   F+ +  RD+  +  +I  +AQ ++   +L+ F  M+   
Sbjct: 553 VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEG 612

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    + ++G L   + LA++E  + +H     SG   ++ VG+ L+D Y K G + +A 
Sbjct: 613 VKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F E L   ++IAWN ++ GYAQ G  +  L  F ++   G +PD  +F  +L+A  + 
Sbjct: 673 ALF-EALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQ 731

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E ++    M   + + P ++H  C++  +GR G+ ++ E     M    +A +W  
Sbjct: 732 GLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWET 791

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           +L  S +H    +  K   +L ++ P ++S+Y++++N+ +  GRWD+V  VR +M  + V
Sbjct: 792 VLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGV 851

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE G SW+E  G+VH F++ D  H + ++I+ KL EL  E   + YVP  + +LHNVG+
Sbjct: 852 KKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGE 911

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK+E L +HSE+LAL F L+S +   K +RI KNLRICRDCH+  K+IS +  +EIVVR
Sbjct: 912 TEKKENLRFHSERLALGFALISTSSE-KKIRIFKNLRICRDCHDVMKHISSITNQEIVVR 970

Query: 557 DVNRYHRFLNGSCTC 571
           DV R+H F NG+C+C
Sbjct: 971 DVRRFHHFKNGACSC 985



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 173/353 (49%), Gaps = 14/353 (3%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS---AHSNSPLSLNIFLSML 88
           D  ++ +L+  Y+K    +Y+  +   +P  ++VSWTALI    A   +  S+ +F  M 
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                  +PN+ TLA+  K C SL  A   G  +H+ + KL L    F GSALV  Y++ 
Sbjct: 206 NE---GIMPNEFTLATGLKAC-SLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKC 261

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              + A K+F  + E++ V +  ++ G+AQ   +   L +F  M   DV    + ++  L
Sbjct: 262 GEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVL 321

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +  A    ++Q +VIH   +  G + N  +G GL+D Y K G+  DA  VF + +   + 
Sbjct: 322 KGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF-KTIKKPDI 380

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG--LAGESEKWI 326
           + W+A++    QQG     ++LFHL+ +    P++Y+  ++L+A  N G    G+S   I
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQS---I 437

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
                +Y  E  +     L++   + G + D  ++  +M  + D   W A LS
Sbjct: 438 HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLS 489



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 182/414 (43%), Gaps = 14/414 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           +++H+  +K   + +  I   L+  YSK  L   ++ +F  I  P+IV W+ALI+     
Sbjct: 334 QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQ 393

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             S  S+ +F  M    TL   PNQ T+ SL  + A+ +    +G S+H+   K      
Sbjct: 394 GQSEESIKLFHLMRLGDTL---PNQYTICSLL-SAATNTGNLQYGQSIHACVWKYGFETD 449

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +ALV  Y +     +  K+++ + +RD++ + A + G          L++F  M  
Sbjct: 450 VAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLE 509

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                 MY     L + + L  +   R +H H + + LD N  V T LID Y K   + D
Sbjct: 510 EGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLED 569

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F+  LSV +   W  ++  YAQ       L  F  ++  G  P+E++    L+  C
Sbjct: 570 ADVAFNR-LSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSG-C 627

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++  + E  + +  M  +      +   + L+    + G +E+AE +  A+    D   W
Sbjct: 628 SSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAW 686

Query: 375 RALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAE 426
             ++   A +G+ + A    + ++D  I+P D   +  + +  S  G  +E  E
Sbjct: 687 NTIICGYAQNGQGNKALTAFRMMLDEGISP-DGVTFTGILSACSHQGLVEEGKE 739



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 145/295 (49%), Gaps = 6/295 (2%)

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
           +  +S+ + CAS   +     ++H L +K  ++       +LV+ Y++ R    A+ V  
Sbjct: 113 KYYSSMLRECAS-KRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLA 171

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
           ++ +RDVV + A+I G        DS+ +F +M++  +    + ++  L+A +   A++ 
Sbjct: 172 KMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDL 231

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            + +H  A   GL  ++ VG+ L+D Y K G +  A ++F   +   N + WN ++ GYA
Sbjct: 232 GKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFI-GMPEQNDVTWNVLLNGYA 290

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q+GD + VL+LF  +       +E++   VL    N+    + +  I  + ++   E G 
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQV-IHSLIIKCGYE-GN 348

Query: 340 EHYTC-LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           E   C L+    + G   DA  +   +  +PD  VW AL++     G+++ + K+
Sbjct: 349 EFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALITCLDQQGQSEESIKL 402


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 206/559 (36%), Positives = 319/559 (57%), Gaps = 11/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
           +HA  LK   Q    + +NLI  YSK+ L  +SL++F+  P  +  +W+++ISA + +  
Sbjct: 47  LHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEA 106

Query: 79  --LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             L+L  F  ML        P+     S  K C  L  + + G S+H L++K   +   F
Sbjct: 107 PLLALQFFRRMLND---GVRPDDHIYPSATKACGFLRRSDV-GKSVHCLAVKTGYYCDVF 162

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GS+LV  Y++     +A+ +FDE+ ER+VV +  MI G+AQ    V++L++F      D
Sbjct: 163 VGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIED 222

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    +  S  +R  +    +E  ++IHG  +    D +  VG+ LI  Y K G++  A 
Sbjct: 223 VDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAY 282

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VFDE +   N   WN+M+   AQ      V  LF  +   G  P+  SFL+VL A  +A
Sbjct: 283 QVFDE-IPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHA 341

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  +  ++   M+  Y +EP  EHY  L+  +GRAG+L++A  +   MP  P  +VW A
Sbjct: 342 GLVEKGREYFSLMR-DYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGA 400

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+   IH   +MA+ +  R+++++      +V+++N  +  GR++E A +RK+++DR V
Sbjct: 401 LLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGV 460

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE G SW+E   KVH F AGDR H +  +IY KL EL EE E+ GYV     +L  V  
Sbjct: 461 KKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDG 520

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK E + YHSE+LA+AFGL++  P G+ +R++KNLR+C DCH + K++S+   R ++VR
Sbjct: 521 EEKNETIRYHSERLAIAFGLITFPP-GRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVR 579

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+HRF +G C+CGD W
Sbjct: 580 DNNRFHRFEDGKCSCGDYW 598



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 163/350 (46%), Gaps = 11/350 (3%)

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
           SF  N R + +L  +  + S +   GL LH+  LK  L   P     L++ YS+ + P  
Sbjct: 20  SFEQNYRQICNLLLS-FTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLF 78

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           + +VFDE  ++    + ++I  FAQN   + +L  F  M +  V    +    A +A   
Sbjct: 79  SLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGF 138

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           L   +  + +H  AV +G   +V VG+ L+D Y K G + DAR +FDE +   N ++W+ 
Sbjct: 139 LRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDE-MPERNVVSWSG 197

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           M+ GYAQ  D    L LF    +     ++++F +V+  +C++    E  K I  + ++ 
Sbjct: 198 MIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIR-VCSSSTFLELGKLIHGLCLKM 256

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD----M 389
             +      + LIS   + G +E A ++   +P   +  +W ++L   A H        +
Sbjct: 257 SFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTR-NLGLWNSMLIACAQHAHTQRVFGL 315

Query: 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
             +MG   + + P +  +++ V    S  G  ++  E   +M+D  +  E
Sbjct: 316 FEEMGN--VGMKP-NFISFLSVLYACSHAGLVEKGREYFSLMRDYGIEPE 362


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 198/567 (34%), Positives = 315/567 (55%), Gaps = 13/567 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           R  H +AL    + D  + + L+  YSK   L  +  LF+ I   NIVSWT++I+ +   
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231

Query: 75  SNSPLSLNIFLSMLRHPTLS-----FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
            ++  +L +F   L   + S        +   + S+   C+ +S   +    +H   +K 
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITE-GVHGFLIKR 290

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
                    + L+  Y++      +++VFD + ERDV+ + ++I  +AQN    +S+ +F
Sbjct: 291 GFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIF 350

Query: 190 ADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
             M +  ++      +S  L A A   +    + IH   +  GL+ NV VGT +ID Y K
Sbjct: 351 HRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCK 410

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G V  AR+ FD  +   N  +W+AM+AGY   G     LE+F+ + M G  P+  +F++
Sbjct: 411 CGKVEMARKAFDR-MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVS 469

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           VL A  +AGL  E   W + M   + +EPG+EHY C++  +GRAG L++A  +   M   
Sbjct: 470 VLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR 529

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
           PD  VW ALL    +H   D+     ++L +++P +   YV+++N+ +  GRW++V  +R
Sbjct: 530 PDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMR 589

Query: 429 KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
            +MK+  + K  G S +++KG+VHVFL GDR H + E IY  L +L  + + +GYVP   
Sbjct: 590 ILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMT 649

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
            +LH+VG  EK   L  HSEKLA+AFG+++  P G T+ I+KNLR+C DCH + K+IS++
Sbjct: 650 SVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVP-GTTIHIIKNLRVCGDCHTAIKFISKI 708

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
           V+REIVVRD  R+H F +G C+CGD W
Sbjct: 709 VDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 163/348 (46%), Gaps = 18/348 (5%)

Query: 55  LFN-HIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL- 112
           LFN ++   N+ SW ++I+  + S  S+    +      LS  PN+ T     K+C++L 
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 113 -SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
             H+   G   H  +L        F  SALV  YS+     +A+ +FDEI  R++V + +
Sbjct: 167 DLHS---GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTS 223

Query: 172 MIVGFAQNSRLVDSLSVFADM---RSSDVGSTMYCVS-----GALRAAAELAAMEQCRVI 223
           MI G+ QN     +L +F +     S   G    CV        L A + ++       +
Sbjct: 224 MITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGV 283

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           HG  +  G + ++ V   L+D Y K G +  +RRVFD  ++  + I+WN+++A YAQ G 
Sbjct: 284 HGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFD-GMAERDVISWNSIIAVYAQNGM 342

Query: 284 QSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
            +  +E+FH +   G    +  +  AVL A  ++G +    K I    ++  LE  +   
Sbjct: 343 STESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG-SQRLGKCIHDQVIKMGLESNVFVG 401

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           T +I    + G++E A R A     E +   W A+++   +HG A  A
Sbjct: 402 TSIIDMYCKCGKVEMA-RKAFDRMREKNVKSWSAMVAGYGMHGHAKEA 448



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 136/292 (46%), Gaps = 14/292 (4%)

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDE-IRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           +  C  A++    R+ +  N   +F++ + + +V  + ++I   A++   V++L  F+ M
Sbjct: 86  RSICAGAVLR--RRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSM 143

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R   +         A+++ + L  +   R  H  A++ G + ++ V + L+D Y K G +
Sbjct: 144 RKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGEL 203

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH--LLEMRG------FAPDEY 304
            DAR +FDE +S  N ++W +M+ GY Q  D    L LF   L+E  G         D  
Sbjct: 204 RDARTLFDE-ISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPI 262

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           + ++VL+A C+        + +    ++   E  L     L+ A  + G L  + R+   
Sbjct: 263 AMVSVLSA-CSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDG 321

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           M  E D   W ++++  A +G +  + ++  R++     + +A  + A +L+
Sbjct: 322 MA-ERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLA 372


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 204/569 (35%), Positives = 315/569 (55%), Gaps = 17/569 (2%)

Query: 19   RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            R+ H +A     + D  + + LI  YSK   L  +  LF+ IP  N+VSWT++I+ +  +
Sbjct: 2035 RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQN 2094

Query: 78   PLSLN---IFLSMLRHPTL----SFLP-NQRTLASLFKTCASLSHAFLFGLS--LHSLSL 127
              + N   +F   L   T     + +P +   + S+   C+ +S     G++  +H   +
Sbjct: 2095 EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK---GITEGVHGFVV 2151

Query: 128  KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
            K         G+ L+  Y++   P  +KKVFD + E+D + + +MI  +AQ+    ++L 
Sbjct: 2152 KKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALE 2211

Query: 188  VFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
            VF  M R   V      +S  L A A   A+   + IH   +   L+ NV VGT +ID Y
Sbjct: 2212 VFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMY 2271

Query: 247  GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
             K G V  A++ FD  +   N  +W AM+AGY   G     L++F+ +   G  P+  +F
Sbjct: 2272 CKCGRVEMAKKTFDR-MKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITF 2330

Query: 307  LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
            ++VL A  +AGL  E   W   MK +Y +EPG+EHY C++   GRAG L +A  +   M 
Sbjct: 2331 VSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMK 2390

Query: 367  FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
             +PD  VW +LL    IH   D+     ++L +++P +   YV+++N+ +  GRW +V  
Sbjct: 2391 MKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVER 2450

Query: 427  VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
            +R +MK+R++ K  G S +E+KG+VHVFL GD+ H   E IY  L +L  E +++GYVP 
Sbjct: 2451 MRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPN 2510

Query: 487  WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
               +LH+V + EK   L  HSEKLA+AFG+++ AP G T+ I+KNLR+C DCH   K IS
Sbjct: 2511 MTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAP-GTTINIIKNLRVCGDCHTVIKLIS 2569

Query: 547  RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            ++V R+ VVRD  R+H F +G C+CGD W
Sbjct: 2570 KLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 163/372 (43%), Gaps = 34/372 (9%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA+ ++S  + D+ +   LI  YS    ++Y++ LF  I +P   +W  +I A++ +
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            LS    +            ++ T   + K C +     L G  +H   +K       F 
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDL-GKVVHGSLIKYGFSGDVFV 162

Query: 138 GSALVHFY-----SRFR--------------------------SPDNAKKVFDEIRERDV 166
            + L+ FY     +RF                               A+++FDEI  ++V
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
           V + AMI G+ +N +  ++L +F  M++ ++    Y +   ++A  E+  +   R IH +
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
           A+ + ++  V +GT LID Y K G + DA  VF E +   +   WN+M+      G    
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF-ETMPRKSLPTWNSMITSLGVHGLGQE 341

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            L LF  +E     PD  +F+ VL A  +     E   +  RM   Y + P  EHY C+ 
Sbjct: 342 ALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMT 401

Query: 347 SAMGRAGRLEDA 358
               R+  L++A
Sbjct: 402 ELYARSNNLDEA 413



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 166/354 (46%), Gaps = 16/354 (4%)

Query: 46   SNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASL 105
            SNL ++    + ++   N+ SW ++I+  +    S+    +      L  +P + +    
Sbjct: 1965 SNLATW---FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCT 2021

Query: 106  FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
             K+C++L    + G   H  +         F  SAL+  YS+     +A+ +FDEI  R+
Sbjct: 2022 IKSCSALCD-LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 2080

Query: 166  VVCYGAMIVGFAQNSRLVDSLSVFADM--------RSSDVGSTMYCVSGALRAAAELAAM 217
            VV + +MI G+ QN +  ++L +F D           ++V      +   L A + ++  
Sbjct: 2081 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 2140

Query: 218  EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
                 +HG  V  G D ++ VG  L+D Y K G    +++VFD  +   + I+WN+M+A 
Sbjct: 2141 GITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDW-MEEKDDISWNSMIAV 2199

Query: 278  YAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
            YAQ G     LE+FH ++   G   +  +  AVL A  +AG A  + K I    ++  LE
Sbjct: 2200 YAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAG-ALRAGKCIHDQVIKMDLE 2258

Query: 337  PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
              +   T +I    + GR+E A++    M  E +   W A+++   +HG+A  A
Sbjct: 2259 YNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMHGRAKEA 2311



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 134/337 (39%), Gaps = 38/337 (11%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           L + C +  H       +H+  ++  L +       L+H YS       A  +F +I+  
Sbjct: 33  LLQNCKNFKHL----RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
               +  +I     N     +L ++ +M    + +  +     ++A     +++  +V+H
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAG----------------IVS--------------- 253
           G  +  G   +V V   LID Y K G                +VS               
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ 208

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +ARR+FDE +   N ++W AM+ GY +       LELF  ++     P+EY+ ++++ A 
Sbjct: 209 EARRIFDE-IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G+     + I    ++  +E G+   T LI    + G ++DA  +   MP       
Sbjct: 268 TEMGILTLG-RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPT 325

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           W ++++   +HG    A  +   +  +N   D+   I
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFI 362


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 196/601 (32%), Positives = 324/601 (53%), Gaps = 41/601 (6%)

Query: 12   QNTSTDPRIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
            Q      R +HA  ++++     I    L+  YS+   L+Y+  +FN +   N  SW ++
Sbjct: 492  QRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSM 551

Query: 71   ISAHSNSPLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
            I  +  +  +    L + +   L+ + P+  +L+S+  +C SLS +   G  LH+  ++ 
Sbjct: 552  IEGYQQNGETQEA-LRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDS-QKGRELHNFIVRN 609

Query: 130  SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD----- 184
            ++ ++      LV  Y++  S D A KV+D+  ++DV+    M+  F  + R  D     
Sbjct: 610  TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLF 669

Query: 185  --------------------------SLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
                                      S + F +M  SD+   +  +   +   + L A+E
Sbjct: 670  DQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALE 729

Query: 219  QCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
                +H   +  G ++ +V++ T L+D Y K G ++ AR VFD N++  N ++WNAM++G
Sbjct: 730  HGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFD-NMNGKNIVSWNAMISG 788

Query: 278  YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
            Y++ G     L L+  +  +G  P+E +FLA+L+A  + GL  E  +    M+  Y +E 
Sbjct: 789  YSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEA 848

Query: 338  GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
              EHYTC++  +GRAGRLEDA+     MP EP+ + W ALL    +H   DM     +RL
Sbjct: 849  KAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRL 908

Query: 398  IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
             +++P +   YVI++N+ +  GRW EV ++R++MK + V+K+ G SWIE+  ++ +F AG
Sbjct: 909  FELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAG 968

Query: 458  DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWY---HSEKLALAF 514
             + H +TE+IY  L  L  + + LGY+P    +L NV D ++ E   Y   HSE+LAL+ 
Sbjct: 969  SKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSL 1028

Query: 515  GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
            GL+S  P+  T+R+ KNLRIC DCH + K+IS++  R I+ RD NR+H F NG C+CGD 
Sbjct: 1029 GLIS-LPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDY 1087

Query: 575  W 575
            W
Sbjct: 1088 W 1088



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 183/363 (50%), Gaps = 11/363 (3%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSF 95
           L+  Y++   +  ++   + I   ++V+W A+I+ +        +  IF  ML+   +  
Sbjct: 216 LVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLK---IGV 272

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P+  T AS  + C +L  +   G  +HS  +        F G+AL+  Y++    ++  
Sbjct: 273 CPDNFTFASALRVCGAL-RSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCL 331

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           KVFDE+ ER+ V + ++I   AQ     D+L +F  M+ S   S  + +   L A+A LA
Sbjct: 332 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLA 391

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            + + R +HGH V + L+ ++I+G+ L+D Y K G+V +A +VF  +L   N +++NA++
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVF-RSLLERNEVSYNALL 450

Query: 276 AGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           AGY Q+G     LEL+H ++   G  PD+++F  +LT LC         + I    +R  
Sbjct: 451 AGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLT-LCANQRNDNQGRQIHAHLIRAN 509

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           +   +   T L+      GRL  A+ I   M  E +A  W +++     +G+   A ++ 
Sbjct: 510 ITKNIIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEGYQQNGETQEALRLF 568

Query: 395 KRL 397
           K++
Sbjct: 569 KQM 571



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 172/383 (44%), Gaps = 26/383 (6%)

Query: 28  SSQADRSIYNNLITN---------------YSKSNLLS---YSLRLFNHIPSPNIVSWTA 69
           S Q  +SI+  +I+N               Y++S  L    Y+ +LF  +P  N+ +W  
Sbjct: 86  SFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNT 145

Query: 70  LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL-SLHSLSLK 128
           +I A++     + +     R        ++ T  S+ K C ++    + G+  L S  +K
Sbjct: 146 MILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMED--MGGVRQLQSSVVK 203

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
             L+   F G ALV  Y+RF   D+A    DEI    VV + A+I G+ +     ++  +
Sbjct: 204 AGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGI 263

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           F  M    V    +  + ALR    L + +  + +H   +  G   +  VG  LID Y K
Sbjct: 264 FDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAK 323

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
                   +VFDE +   N + WN++++  AQ G  +  L LF  ++  G+  + ++  +
Sbjct: 324 CDDEESCLKVFDE-MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGS 382

Query: 309 VLTALCNAGLAGESE-KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           +L A  +AGLA   + + +    VR  L   +   + L+    + G +E+A ++  ++  
Sbjct: 383 ILMA--SAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSL-L 439

Query: 368 EPDAAVWRALLSFSAIHGKADMA 390
           E +   + ALL+     GKA+ A
Sbjct: 440 ERNEVSYNALLAGYVQEGKAEEA 462


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 196/541 (36%), Positives = 307/541 (56%), Gaps = 14/541 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           + N LI  Y K NLL+ + +LF+ +P  N++SWT +ISA+S   +   +L + + MLR  
Sbjct: 50  LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD- 108

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                PN  T +S+ + C  +S   +    LH   +K  L    +  SAL+  +++   P
Sbjct: 109 --GVRPNVYTYSSVLRACNGMSDVRM----LHCGIIKEGLESDVYVRSALIDVFAKLGEP 162

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           ++A  VFDE+   D + + ++I GFAQNSR   +L +F  M+ +   +    ++  LRA 
Sbjct: 163 EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC 222

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
             LA +E     H H V    D+++I+   L+D Y K G + DARRVF++ +   + I W
Sbjct: 223 TGLALLELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDARRVFNQ-MKERDVITW 279

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           + M++G AQ G     L+LF L++  G  P+  + + VL A  +AGL  +   +   MK 
Sbjct: 280 STMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKK 339

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y + PG EHY C+I  +G+AG+L+DA ++   M  EPDA  WR LL    +     +A 
Sbjct: 340 LYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE 399

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              K++I ++P D   Y +++N+ +   +WD V E+RK M+D  ++KE G SWIEV  ++
Sbjct: 400 YAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQI 459

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F+ GD  H +  ++  KL +L+     +GYVP  + +L ++   +  ++L +HSEKLA
Sbjct: 460 HAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLA 519

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           LAFGL++  P  K +RI KNLRIC DCH   K  S++  R IV+RD  RYH F +G C+C
Sbjct: 520 LAFGLMT-LPSEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSC 578

Query: 572 G 572
           G
Sbjct: 579 G 579



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 8/183 (4%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+ +  +I  H   +G    + +   LI+ Y K  +++DA ++FD+ +   N I+W  M+
Sbjct: 28  AVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQ-MPQRNVISWTTMI 86

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE-KWIERMKVRYK 334
           + Y++       LEL  L+   G  P+ Y++ +VL A CN    G S+ + +    ++  
Sbjct: 87  SAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA-CN----GMSDVRMLHCGIIKEG 141

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           LE  +   + LI    + G  EDA  +   M    DA VW +++   A + ++D+A ++ 
Sbjct: 142 LESDVYVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELF 200

Query: 395 KRL 397
           KR+
Sbjct: 201 KRM 203


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 204/569 (35%), Positives = 315/569 (55%), Gaps = 17/569 (2%)

Query: 19   RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            R+ H +A     + D  + + LI  YSK   L  +  LF+ IP  N+VSWT++I+ +  +
Sbjct: 1162 RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQN 1221

Query: 78   PLSLN---IFLSMLRHPTL----SFLP-NQRTLASLFKTCASLSHAFLFGLS--LHSLSL 127
              + N   +F   L   T     + +P +   + S+   C+ +S     G++  +H   +
Sbjct: 1222 EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK---GITEGVHGFVV 1278

Query: 128  KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
            K         G+ L+  Y++   P  +KKVFD + E+D + + +MI  +AQ+    ++L 
Sbjct: 1279 KKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALE 1338

Query: 188  VFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
            VF  M R   V      +S  L A A   A+   + IH   +   L+ NV VGT +ID Y
Sbjct: 1339 VFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMY 1398

Query: 247  GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
             K G V  A++ FD  +   N  +W AM+AGY   G     L++F+ +   G  P+  +F
Sbjct: 1399 CKCGRVEMAKKTFDR-MKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITF 1457

Query: 307  LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
            ++VL A  +AGL  E   W   MK +Y +EPG+EHY C++   GRAG L +A  +   M 
Sbjct: 1458 VSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMK 1517

Query: 367  FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
             +PD  VW +LL    IH   D+     ++L +++P +   YV+++N+ +  GRW +V  
Sbjct: 1518 MKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVER 1577

Query: 427  VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
            +R +MK+R++ K  G S +E+KG+VHVFL GD+ H   E IY  L +L  E +++GYVP 
Sbjct: 1578 MRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPN 1637

Query: 487  WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
               +LH+V + EK   L  HSEKLA+AFG+++ AP G T+ I+KNLR+C DCH   K IS
Sbjct: 1638 MTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAP-GTTINIIKNLRVCGDCHTVIKLIS 1696

Query: 547  RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            ++V R+ VVRD  R+H F +G C+CGD W
Sbjct: 1697 KLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 163/372 (43%), Gaps = 34/372 (9%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA+ ++S  + D+ +   LI  YS    ++Y++ LF  I +P   +W  +I A++ +
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            LS    +            ++ T   + K C +     L G  +H   +K       F 
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDL-GKVVHGSLIKYGFSGDVFV 162

Query: 138 GSALVHFY-----SRFR--------------------------SPDNAKKVFDEIRERDV 166
            + L+ FY     +RF                               A+++FDEI  ++V
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV 222

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
           V + AMI G+ +N +  ++L +F  M++ ++    Y +   ++A  E+  +   R IH +
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
           A+ + ++  V +GT LID Y K G + DA  VF E +   +   WN+M+      G    
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF-ETMPRKSLPTWNSMITSLGVHGLGQE 341

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            L LF  +E     PD  +F+ VL A  +     E   +  RM   Y + P  EHY C+ 
Sbjct: 342 ALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMT 401

Query: 347 SAMGRAGRLEDA 358
               R+  L++A
Sbjct: 402 ELYARSNNLDEA 413



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 170/362 (46%), Gaps = 16/362 (4%)

Query: 46   SNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASL 105
            SNL ++    + ++   N+ SW ++I+  +    S+    +      L  +P + +    
Sbjct: 1092 SNLATW---FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCT 1148

Query: 106  FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
             K+C++L    + G   H  +         F  SAL+  YS+     +A+ +FDEI  R+
Sbjct: 1149 IKSCSALCD-LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 1207

Query: 166  VVCYGAMIVGFAQNSRLVDSLSVFADM--------RSSDVGSTMYCVSGALRAAAELAAM 217
            VV + +MI G+ QN +  ++L +F D           ++V      +   L A + ++  
Sbjct: 1208 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 1267

Query: 218  EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
                 +HG  V  G D ++ VG  L+D Y K G    +++VFD  +   + I+WN+M+A 
Sbjct: 1268 GITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDW-MEEKDDISWNSMIAV 1326

Query: 278  YAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
            YAQ G     LE+FH ++   G   +  +  AVL A  +AG A  + K I    ++  LE
Sbjct: 1327 YAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAG-ALRAGKCIHDQVIKMDLE 1385

Query: 337  PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
              +   T +I    + GR+E A++    M  E +   W A+++   +HG+A  A  +  +
Sbjct: 1386 YNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMHGRAKEALDIFYK 1444

Query: 397  LI 398
            ++
Sbjct: 1445 MV 1446



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 134/337 (39%), Gaps = 38/337 (11%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           L + C +  H       +H+  ++  L +       L+H YS       A  +F +I+  
Sbjct: 33  LLQNCKNFKHL----RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
               +  +I     N     +L ++ +M    + +  +     ++A     +++  +V+H
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAG----------------IVS--------------- 253
           G  +  G   +V V   LID Y K G                +VS               
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ 208

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +ARR+FDE +   N ++W AM+ GY +       LELF  ++     P+EY+ ++++ A 
Sbjct: 209 EARRIFDE-IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G+     + I    ++  +E G+   T LI    + G ++DA  +   MP       
Sbjct: 268 TEMGILTLG-RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPT 325

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           W ++++   +HG    A  +   +  +N   D+   I
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFI 362


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 196/544 (36%), Positives = 309/544 (56%), Gaps = 14/544 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           + N LI  Y K NLL+ + +LF+ +P  N++SWT +ISA+S   +   +L + + MLR  
Sbjct: 98  LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD- 156

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
             +  PN  T +S+ ++C  +S   +    LH   +K  L    F  SAL+  +++   P
Sbjct: 157 --NVRPNVYTYSSVLRSCNGMSDVRM----LHCGIIKEGLESDVFVRSALIDVFAKLGEP 210

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           ++A  VFDE+   D + + ++I GFAQNSR   +L +F  M+ +   +    ++  LRA 
Sbjct: 211 EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC 270

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
             LA +E     H H V    D+++I+   L+D Y K G + DA RVF++ +   + I W
Sbjct: 271 TGLALLELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDALRVFNQ-MKERDVITW 327

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           + M++G AQ G     L+LF  ++  G  P+  + + VL A  +AGL  +   +   MK 
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKK 387

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y ++P  EHY C+I  +G+AG+L+DA ++   M  EPDA  WR LL    +     +A 
Sbjct: 388 LYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE 447

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              K++I ++P D   Y +++N+ +   +WD V E+R  M+DR ++KE G SWIEV  ++
Sbjct: 448 YAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F+ GD  H +  ++  KL +L+     +GYVP  + +L ++   +  ++L +HSEKLA
Sbjct: 508 HAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLA 567

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           LAFGL++  P  K +RI KNLRIC DCH   K  S++  R IV+RD  RYH F +G C+C
Sbjct: 568 LAFGLMT-LPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSC 626

Query: 572 GDLW 575
           GD W
Sbjct: 627 GDYW 630



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 91/183 (49%), Gaps = 8/183 (4%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+ +  +I  H   +G    + +   LI+ Y K  +++DA ++FD+ +   N I+W  M+
Sbjct: 76  AVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQ-MPQRNVISWTTMI 134

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE-KWIERMKVRYK 334
           + Y++       LEL  L+      P+ Y++ +VL + CN    G S+ + +    ++  
Sbjct: 135 SAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS-CN----GMSDVRMLHCGIIKEG 189

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           LE  +   + LI    + G  EDA  +   M    DA VW +++   A + ++D+A ++ 
Sbjct: 190 LESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELF 248

Query: 395 KRL 397
           KR+
Sbjct: 249 KRM 251



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 36/199 (18%)

Query: 22  HARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSL 81
           H   +K  Q D  + N L+  Y K   L  +LR+FN +   ++++W+ +IS  + +  S 
Sbjct: 283 HVHIVKYDQ-DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQ 341

Query: 82  NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSAL 141
                  R  +    PN  T+  +   C   SHA L             L D        
Sbjct: 342 EALKLFERMKSSGTKPNYITIVGVLFAC---SHAGL-------------LEDG------- 378

Query: 142 VHFYSRFRSPDNAKKVF--DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
              +  FRS    KK++  D +RE     YG MI    +  +L D++ +  +M       
Sbjct: 379 ---WYYFRS---MKKLYGIDPVREH----YGCMIDLLGKAGKLDDAVKLLNEMECEPDAV 428

Query: 200 TMYCVSGALRAAAELAAME 218
           T   + GA R    +   E
Sbjct: 429 TWRTLLGACRVQRNMVLAE 447


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 315/549 (57%), Gaps = 9/549 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSNSP-LSLNIFLS 86
           Q D  + N  +  Y+K  +L  + R+F  + +  + SW ALI   A +  P  +LN+++ 
Sbjct: 268 QYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQ 327

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M        +P+  T+ SL    A L  +  +G  +H   L+  L    F G +L+  Y 
Sbjct: 328 MTYS---GLVPDWFTIGSLLLASAHLK-SLRYGKEVHGFVLRHGLEIDSFIGISLLSLYI 383

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
                 +A+ +FD + E+  V + AMI G++QN    D+L +F  + S     +   V  
Sbjct: 384 HCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVS 443

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A ++ +A+   +  H +A+ + L  +V V    ID Y K+G + ++R VFD  L   
Sbjct: 444 VLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFD-GLKNK 502

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           +  +WNA++A Y   GD    +ELF  +   G  PD ++F+ +LT   +AGL  E  K+ 
Sbjct: 503 DLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYF 562

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             M+  + +EP LEHY C++  +GRAGRL+DA R+   MP +PD+ VW +LLSF    G+
Sbjct: 563 NEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGE 622

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++   + ++L+++ P +   YV ++N+ +G GRWD+V  VR+++KD  ++K+ G SWIE
Sbjct: 623 LEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIE 682

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           + GKVH F+AGD +  +++++     +L ++  ++GY P    +LH+V + +K E L  H
Sbjct: 683 LGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGH 742

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+ FGL++   +G TLRI KNLRIC DCH + K++S V  REI++RD  R+H F +
Sbjct: 743 SEKLAICFGLLN-TTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKD 801

Query: 567 GSCTCGDLW 575
           G C+CGD W
Sbjct: 802 GLCSCGDYW 810



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 145/298 (48%), Gaps = 6/298 (2%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            ++H   +K     D  + N LI  Y K   +  ++++F+++P  N+VSW ++IS  S +
Sbjct: 51  EVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSEN 110

Query: 78  PLSLNIF--LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
             S + F  L  +       LP+  TL ++   CA      + G+ +H L++KL L +  
Sbjct: 111 GFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQM-GIRIHGLAVKLGLSEDV 169

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-S 194
              ++LV  YS+      A+ +FD+   ++ V +  MI G      + ++ ++F +M+  
Sbjct: 170 RVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQ 229

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            D+      V   L A  E++ +   + +HG+++  G   + +V  G +  Y K G++  
Sbjct: 230 EDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLIC 289

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           A RVF  ++      +WNA++ G AQ GD    L L+  +   G  PD ++  ++L A
Sbjct: 290 AERVF-YSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLA 346



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 181/408 (44%), Gaps = 11/408 (2%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  A+K   + D  + N+L+  YSK   L+ +  LF+     N VSW  +I        
Sbjct: 156 IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGY 215

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              + N+F  M     +    N+ T+ ++   C  +S        LH  S++        
Sbjct: 216 IFEAFNLFREMQMQEDIEV--NEVTVLNILPACLEISQLRSLK-ELHGYSIRHGFQYDEL 272

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +  V  Y++      A++VF  +  + V  + A+I G AQN     +L+++  M  S 
Sbjct: 273 VANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSG 332

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +    + +   L A+A L ++   + +HG  +  GL+ +  +G  L+  Y   G  S AR
Sbjct: 333 LVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSAR 392

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +FD  +   +S++WNAM++GY+Q G     L LF  L   GF P + + ++VL A C+ 
Sbjct: 393 LLFD-GMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGA-CSQ 450

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
             A    K      ++  L   +      I    ++G ++++  +   +    D A W A
Sbjct: 451 QSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNA 509

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDE 423
           +++   +HG  + + ++ +R+  +    D   ++ +  V S  G  +E
Sbjct: 510 IIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEE 557



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 148/321 (46%), Gaps = 13/321 (4%)

Query: 71  ISAHSNSPLS--LNIFLSMLRHPTLSFLPNQRTLASLFKTC-ASLSHAFLFGLSLHSLSL 127
           ++ H N   S  +++F+ ++      F  +  T   + K C  SL      G  +H + +
Sbjct: 3   VAVHRNELYSDAIDMFVKLITDT--EFNADNFTFPCVIKACTGSLDRGL--GEVIHGMVI 58

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
           K+ L    F G+AL+  Y +F   D A KVF  +  R++V + ++I GF++N    D   
Sbjct: 59  KMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFD 118

Query: 188 VFADMRSSDVG--STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           +  +M + + G    +  +   L   A    ++    IHG AV  GL  +V V   L+D 
Sbjct: 119 MLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDM 178

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEY 304
           Y K G +++A+ +FD+N +  N+++WN M+ G   +G       LF  ++M+     +E 
Sbjct: 179 YSKCGYLTEAQMLFDKN-NRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEV 237

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           + L +L A C       S K +    +R+  +         ++A  + G L  AER+  +
Sbjct: 238 TVLNILPA-CLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYS 296

Query: 365 MPFEPDAAVWRALLSFSAIHG 385
           M  +     W AL+   A +G
Sbjct: 297 METKT-VNSWNALIGGCAQNG 316


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 205/593 (34%), Positives = 314/593 (52%), Gaps = 44/593 (7%)

Query: 20  IVHARALKSSQADRSIYNNLITN------YSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           + H   + +S   R +Y+N I N      Y+    L  S+ +FN    PN+ S++A+I +
Sbjct: 60  VAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHS 119

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           H  S L    F    +  +    PN  T +S+ K+C+  S     G  LH  ++KL L  
Sbjct: 120 HVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLES-----GKVLHCQAIKLGLGS 174

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDE-------------------------------IR 162
             +  + LV  Y+R      A+++FD+                               ++
Sbjct: 175 DLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMK 234

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           ERDVVC+  MI G+AQ+    +SL +F  M  +        V   L A  +L A+E  R 
Sbjct: 235 ERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRW 294

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH +    G+  NV VGT LID Y K G + DAR VFD  +   + +AWN+M+ GYA  G
Sbjct: 295 IHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDR-IRDKDVVAWNSMIVGYAMHG 353

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                L+LF  +   G  P + +F+ +L+A  + GL  E   +   M+ +Y +EP +EHY
Sbjct: 354 FSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHY 413

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
            C+++ +GRAG LE+A  +   M    D  +W  LL    +H    +  ++ K L+D   
Sbjct: 414 GCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKL 473

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
            +   YV+++N+ +  G W+ VA++R +MK+  + KE G S IEV  KVH F+AG+R H 
Sbjct: 474 ANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHP 533

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
           ++++IY  L E+    +  GY P  D +LH++ + +K ++L  HSEKLA+AFGL+S  P 
Sbjct: 534 KSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKP- 592

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           G T++IVKNLR+C DCH   K IS +  R+IV+RD NR+H F +G C+CGD W
Sbjct: 593 GTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 199/561 (35%), Positives = 314/561 (55%), Gaps = 11/561 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           RIVHA  L+S  + D  + N L+  Y+K   L  + ++F  +P  + V+WT LIS +S  
Sbjct: 80  RIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQH 139

Query: 76  NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           + P  +L  F  MLR     + PN+ TL+S+ K  A+       G  LH   +K      
Sbjct: 140 DRPCDALLFFNQMLR---FGYSPNEFTLSSVIKAAAAERRGCC-GHQLHGFCVKCGFDSN 195

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              GSAL+  Y+R+   D+A+ VFD +  R+ V + A+I G A+ S    +L +F  M  
Sbjct: 196 VHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLR 255

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                + +  +    A +    +EQ + +H + + SG       G  L+D Y K+G + D
Sbjct: 256 DGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHD 315

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR++FD  L+  + ++WN+++  YAQ G     +  F  +   G  P+E SFL+VLTA  
Sbjct: 316 ARKIFDR-LAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++GL  E   + E MK +  + P   HY  ++  +GRAG L  A R    MP EP AA+W
Sbjct: 375 HSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIW 433

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           +ALL+   +H   ++ +   + + +++P D   +VI+ N+ +  GRW++ A VRK MK+ 
Sbjct: 434 KALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKES 493

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V+KE   SW+E++  +H+F+A D  H + E+I  K  E++ + + LGYVP    ++ +V
Sbjct: 494 GVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHV 553

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
             +E+   L YHSEK+ALAF L++  P G T+ I KN+R+C DCH + K  S+VV REI+
Sbjct: 554 DQQEREVNLQYHSEKIALAFALLNTPP-GSTIHIKKNIRVCGDCHTAIKLASKVVGREII 612

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+H F +G+C+C D W
Sbjct: 613 VRDTNRFHHFKDGNCSCKDYW 633



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 170/344 (49%), Gaps = 12/344 (3%)

Query: 94  SFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           S++P ++R   +L K C ++    + G  +H+  L+         G+ L++ Y++  S +
Sbjct: 54  SYIPADRRFYNTLLKKC-TVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLE 112

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
            A+KVF+++ +RD V +  +I G++Q+ R  D+L  F  M         + +S  ++AAA
Sbjct: 113 EARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172

Query: 213 ELAAMEQC--RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
             A    C    +HG  V  G D NV VG+ L+D Y + G++ DA+ VFD  L   N ++
Sbjct: 173 --AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDA-LESRNDVS 229

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WNA++AG+A++      LELF  +   GF P  +S+ ++  A  + G   E  KW+    
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFL-EQGKWVHAYM 288

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           ++   +        L+    ++G + DA +I   +  + D   W +LL+  A HG    A
Sbjct: 289 IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHGFGKEA 347

Query: 391 SKMGK--RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
               +  R + I P ++ +++ V    S  G  DE     ++MK
Sbjct: 348 VWWFEEMRRVGIRP-NEISFLSVLTACSHSGLLDEGWHYYELMK 390



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 96/204 (47%), Gaps = 5/204 (2%)

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           F  N  L+ + S   D+  S + +     +  L+       + Q R++H H + S    +
Sbjct: 37  FPSNDLLLRTSS--NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHD 94

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           +++G  L++ Y K G + +AR+VF E +   + + W  +++GY+Q       L  F+ + 
Sbjct: 95  IVMGNTLLNMYAKCGSLEEARKVF-EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G++P+E++  +V+ A   A   G     +    V+   +  +   + L+    R G +
Sbjct: 154 RFGYSPNEFTLSSVIKAAA-AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM 212

Query: 356 EDAERIAMAMPFEPDAAVWRALLS 379
           +DA+ +  A+    D + W AL++
Sbjct: 213 DDAQLVFDALESRNDVS-WNALIA 235


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/565 (33%), Positives = 328/565 (58%), Gaps = 18/565 (3%)

Query: 19  RIVHARAL-KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAH 74
           +  HA+ L    + D    N LI  YSK   + ++ ++F+ +PS ++VSW  +I   + +
Sbjct: 84  KACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQN 143

Query: 75  SNSPLSLNIFLSMLRHPTLSFLP-NQRTLASLFKTCAS---LSHAFLFGLSLHSLSLKLS 130
                +L++ L M R  T    P ++ T++S+   CA+   LS   L    LH+ ++K +
Sbjct: 144 GEENEALDLLLQMQREGT----PFSEFTISSVLCACAAKCALSECQL----LHAFAIKAA 195

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           +    F  +AL+  Y++     +A  VF+ + +R VV + +M  G+ QN     +L++F 
Sbjct: 196 MDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFR 255

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
               + +    + +S  + A A LAAM + + ++     SG   N+ V + LID Y K G
Sbjct: 256 KAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCG 315

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            + ++ +VF  ++   N + WNAM++G ++      V+ LF  ++  G +P++ +F++VL
Sbjct: 316 GIEESYKVF-RDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVL 374

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  + GL  + +K+ + M   + L P + HY+C++  + RAG++ +A  +   +PF   
Sbjct: 375 SACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNAS 434

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A++W +LL+    HG  ++A    K+L DI P++   Y++++N+ +  G+WDEVA++RK+
Sbjct: 435 ASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKL 494

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           +K+  V+KE G+SWIE+K KVH+F+ G+R H +  +IY+KL E+M+E ++LGY       
Sbjct: 495 LKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHD 554

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           LH VG+  K+E L +HSEKLA   GL+   P    +RI+KNLRIC DCH   K  S+   
Sbjct: 555 LHQVGESIKQELLRHHSEKLAFTMGLLFLPPNA-PIRIMKNLRICGDCHSFMKLASKFFC 613

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           R+++VRD NR+H F NG C+CGD W
Sbjct: 614 RDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 156/328 (47%), Gaps = 12/328 (3%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           + K CA      L G + H+  L + L       + L++ YS+  S D A++VFDE+  R
Sbjct: 70  ILKLCAK-RKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSR 128

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
            +V +  MI    QN    ++L +   M+      + + +S  L A A   A+ +C+++H
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLH 188

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
             A+ + +D NV V T L+D Y K G++ DA  VF E++   + + W++M AGY Q    
Sbjct: 189 AFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVF-ESMPDRSVVTWSSMAAGYVQNEMY 247

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE-KWIERMKVRYKLEPGLEHYT 343
              L LF      G   D++   +V+ A   AGLA   E K +  +  +      +   +
Sbjct: 248 EQALALFRKAWETGLKHDQFLMSSVICAC--AGLAAMIEGKQMNALLSKSGFCSNIFVAS 305

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL--IDIN 401
            LI    + G +E++ ++   +  + +  +W A++S  + H ++     + +++  + ++
Sbjct: 306 SLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLS 364

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           P D    V   +VLS  G    V + +K
Sbjct: 365 PND----VTFVSVLSACGHMGLVRKGQK 388


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 305/559 (54%), Gaps = 11/559 (1%)

Query: 21   VHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            VH  A+++   +D  + +  I  Y +   +  +  LF+ +   ++ +W A+I   +    
Sbjct: 546  VHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRC 605

Query: 80   ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               +L++FL M R     F+P+  T  ++         A  +   +HS +    L D   
Sbjct: 606  GREALSLFLQMQRE---GFIPDATTFINILSANVD-EEALEWVKEVHSHATDAGLVDLRV 661

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             G+ALVH YS+  +   AK+VFD++ ER+V  +  MI G AQ+    D+ S F  M    
Sbjct: 662  -GNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREG 720

Query: 197  VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
            +          L A A   A+E  + +H HAV +GL  ++ VG  L+  Y K G + DAR
Sbjct: 721  IVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDAR 780

Query: 257  RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             VFD+ +   +  +W  M+ G AQ G     L+ F  ++  GF P+ YS++AVLTA  +A
Sbjct: 781  SVFDDMVE-RDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHA 839

Query: 317  GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            GL  E  +    M   Y +EP +EHYTC++  +GRAG LE+AE   + MP EPD A W A
Sbjct: 840  GLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGA 899

Query: 377  LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            LL     +G  +MA    K  + + P   S YV+++N+ +  G+W++   VR +M+ + +
Sbjct: 900  LLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGI 959

Query: 437  RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            RKE GRSWIEV  ++H F+ GD  H  +++IY +L +L+E  +  GYVP    +L N   
Sbjct: 960  RKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQ 1019

Query: 497  REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
              K +AL  HSEKLA+ +GL+    +   +R+ KNLR+C DCH + K+IS++  REIV R
Sbjct: 1020 EHKEQALCSHSEKLAIVYGLMHTQSK-DPIRVYKNLRVCSDCHTATKFISKITGREIVAR 1078

Query: 557  DVNRYHRFLNGSCTCGDLW 575
            D  R+H F +G C+CGD W
Sbjct: 1079 DAKRFHHFKDGVCSCGDYW 1097



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 197/416 (47%), Gaps = 19/416 (4%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VH+ A+ +  A D  + N L+  Y+KS  +  +  +F+ +   +I SWT +I     H  
Sbjct: 342 VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGR 401

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL-HSLSLKLSLHDKP 135
              + ++FL M R+  L   PN  T  S+    A  S + L  + + H  + +       
Sbjct: 402 GQEAFSLFLQMQRNGCL---PNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDL 458

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             G+AL+H Y++  S D+A+ VFD + +RDV+ + AM+ G AQN    ++ +VF  M+  
Sbjct: 459 RIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQE 518

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +          L       A+E    +H HAV +GL  +  VG+  I  Y + G + DA
Sbjct: 519 GLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDA 578

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R +FD+ LSV +   WNAM+ G AQQ      L LF  ++  GF PD  +F+ +L+    
Sbjct: 579 RLLFDK-LSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILS---- 633

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHY---TCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
           A +  E+ +W++ +   +  + GL        L+    + G ++ A+++   M  E +  
Sbjct: 634 ANVDEEALEWVKEVH-SHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDM-VERNVT 691

Query: 373 VWRALLSFSAIHGKA-DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            W  ++   A HG   D  S   + L +    D + YV + +  +  G  + V EV
Sbjct: 692 TWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEV 747



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 177/373 (47%), Gaps = 17/373 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---N 76
           VH   +KS  + +  + N L+  Y +   L  + ++F+ +   NI  WT +I  ++   +
Sbjct: 140 VHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGH 199

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +  ++ ++  M +       PN+ T  S+ K C    +   +G  +H+  ++        
Sbjct: 200 AEDAMRVYDKMRQECGQ---PNEITYLSILKACCCPVN-LKWGKKIHAHIIQSGFQSDVR 255

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +ALV+ Y +  S ++A+ +FD++ ER+V+ +  MI G A   R  ++  +F  M+   
Sbjct: 256 VETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREG 315

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                Y     L A A   A+E  + +H HAV +GL  ++ VG  L+  Y K+G + DAR
Sbjct: 316 FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDAR 375

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFD  ++  +  +W  M+ G AQ G       LF  ++  G  P+  ++L++L A  +A
Sbjct: 376 VVFD-GMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA--SA 432

Query: 317 GLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +  + +W++ +  ++  E G    L     LI    + G ++DA R+      + D  
Sbjct: 433 IASTSALEWVKVVH-KHAEEAGFISDLRIGNALIHMYAKCGSIDDA-RLVFDGMCDRDVI 490

Query: 373 VWRALLSFSAIHG 385
            W A++   A +G
Sbjct: 491 SWNAMMGGLAQNG 503



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 125/275 (45%), Gaps = 3/275 (1%)

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
            L    +H   +K  +    +  + L+  Y R      A++VFD++ ++++  +  MI G
Sbjct: 134 ILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGG 193

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           +A+     D++ V+  MR              L+A      ++  + IH H + SG   +
Sbjct: 194 YAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSD 253

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           V V T L++ Y K G + DA+ +FD+ +   N I+W  M+ G A  G       LF  ++
Sbjct: 254 VRVETALVNMYVKCGSIEDAQLIFDKMVE-RNVISWTVMIGGLAHYGRGQEAFHLFLQMQ 312

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             GF P+ Y+++++L A  +AG A E  K +    V   L   L     L+    ++G +
Sbjct: 313 REGFIPNSYTYVSILNANASAG-ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSI 371

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           +DA  +   M  E D   W  ++   A HG+   A
Sbjct: 372 DDARVVFDGMT-ERDIFSWTVMIGGLAQHGRGQEA 405


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 201/558 (36%), Positives = 311/558 (55%), Gaps = 7/558 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA  + S     RS+   LI+    +  ++Y+ RLF  +P+P+   + +L+   S    
Sbjct: 46  VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 105

Query: 80  SLNIFLSMLRHPTLSFLPNQR-TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
           S++  L   R    S  P    T  S+ K CA LS A   G  +HS  +        +  
Sbjct: 106 SIDTVL-FYRRMLFSGAPQSNYTFTSVIKACADLS-ALRLGKEIHSHVMVCGYGSDMYVQ 163

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +AL+  Y++      AKKVFD + +R ++ + ++I G+ QN    +S+ +F  M  S   
Sbjct: 164 AALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQ 223

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                +   L + ++L A++    +H +A  +G D NV++GT LI+ Y + G VS AR V
Sbjct: 224 PDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREV 283

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD ++   N + W AM++GY   G     +ELF  +   G  P+  +F+AVL+A  ++GL
Sbjct: 284 FD-SMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGL 342

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA-ERIAMAMPFEPDAAVWRAL 377
             +  +    MK  Y L PG+EH  C++   GRAG L DA + I   +P EP  AVW ++
Sbjct: 343 IDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSM 402

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    +H   D+  K+ + ++ + P +   YV+++N+ +  GR D V  VR +M  RR++
Sbjct: 403 LGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLK 462

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K+ G S IE+  K ++F  GD+ H +T  IY  L ELM  C   GYVP  + ++H++ + 
Sbjct: 463 KQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEE 522

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           E+  AL YHSEKLALAFGL+    +G+T+RIVKNLRIC DCH + K+IS + +REI+VRD
Sbjct: 523 ERDYALRYHSEKLALAFGLLK-TNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRD 581

Query: 558 VNRYHRFLNGSCTCGDLW 575
             R+H F +GSC+C D W
Sbjct: 582 KFRFHHFKDGSCSCLDYW 599


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/558 (34%), Positives = 316/558 (56%), Gaps = 5/558 (0%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           R VH    +++ ++  + N+L+  YSK + L    +LF+ +   + VS+  +I+ ++ + 
Sbjct: 261 RQVHGLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNR 320

Query: 79  LSLNIFLSMLRH-PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            + +I L + R   +LSF       ASL     S+ H  + G  +H+  + L L  +   
Sbjct: 321 CA-SIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGI-GKQIHAQLVLLGLSSEDLV 378

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  YS+    D AK  F    ++  V + AMI G  QN +  ++L +F  MR + +
Sbjct: 379 GNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGL 438

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                  S  ++A++ LA +   R +H + + SG   +V  G+ L+D Y K G + +A +
Sbjct: 439 SPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQ 498

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            FDE +   NSI+WNA+++ YA  G     +++F  +   GF PD  +FL+VL+A  + G
Sbjct: 499 TFDE-MPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNG 557

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           LA E  K+ E M+  Y + P  EHY+C+I  +GR GR +  + +   MPFE D  +W ++
Sbjct: 558 LAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSI 617

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L     HG  D+A    ++L  +   D + YVI++N+ +  G+W++ A V+K+M+DR +R
Sbjct: 618 LHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLR 677

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           KE G SW+EVK KV+ F + D+ +    +I  +L  L +E ++ GY P     L  V D 
Sbjct: 678 KETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDD 737

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            K E+L YHSE+LA+AF L++  P G  +R++KNL  C DCH + K +S++V R+I+VRD
Sbjct: 738 IKLESLKYHSERLAIAFALIN-TPPGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRD 796

Query: 558 VNRYHRFLNGSCTCGDLW 575
            +R+H F +G C+CGD W
Sbjct: 797 SSRFHHFKDGFCSCGDYW 814



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 185/403 (45%), Gaps = 30/403 (7%)

Query: 19  RIVHARALKSSQADRS---IYNNLITNYSKSNLLSYSLRLFNHIPSPNI---VSWTALIS 72
           R+  ARAL      R+     N +++ YS+S  LS +  LF   P P++   V+WT +I 
Sbjct: 49  RLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSP-PHLRDAVTWTVMIG 107

Query: 73  AHSNSPLS-----LNIFLSMLRHPTLSFLPNQRTLASLFK--TCASLSHAFLFGLSLHSL 125
           A +++P +     +++F  MLR       P++ T+A++      +  + A +   SLH  
Sbjct: 108 AFASAPGARASDAVSLFRDMLRE---GVAPDRVTVATVLNLPPASGGTAAAIIIASLHPF 164

Query: 126 SLKLSL-HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
           +LKL L H      + L+  Y +      A++VF E+  RD V Y AM++G ++     +
Sbjct: 165 ALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAE 224

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L +FA MR   + +T +  S  L  A  +  +   R +HG  V      NV V   L+D
Sbjct: 225 ALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHG-LVARATSSNVFVNNSLLD 283

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF---AP 301
            Y K   + + +++F E +   N +++N M+AGYA     S VL LF  ++   F   A 
Sbjct: 284 FYSKCDCLDEMKKLFHEMIERDN-VSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQAL 342

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
              S L+V  ++ + G+     K I    V   L         LI    + G L DA + 
Sbjct: 343 PYASLLSVAGSVPHIGIG----KQIHAQLVLLGLSSEDLVGNALIDMYSKCGML-DAAKT 397

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKM--GKRLIDINP 402
                 +     W A+++    +G+ + A ++  G R   ++P
Sbjct: 398 NFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSP 440


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 308/568 (54%), Gaps = 7/568 (1%)

Query: 11  PQNTSTDPRIVHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           P+ ++  P+I HA AL+      D  +    +  Y K+  L  + RLF  +P+ N+++W 
Sbjct: 126 PRCSTVGPQI-HALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWN 184

Query: 69  ALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           A+++        L  F +         +PN  ++ + F  CA      L G   H   + 
Sbjct: 185 AVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSL-GEQFHGFVVT 243

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
                     +A+V FY + R    A+ VFD +R R+ V + +MIV +AQ+    D+L+V
Sbjct: 244 CGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAV 303

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           +   R++    T + VS  L   A L  +   R +H  AV S +D N+ V + L+D YGK
Sbjct: 304 YMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGK 363

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFL 307
            G V DA +VF  ++   N + WNAM+ GYA  GD    L +F  ++   G +P+  + +
Sbjct: 364 CGGVEDAEQVF-LDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLV 422

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            V+TA    GL  +  +  + M+ R+ +EP  EHY C++  +GRAG  E A  I   MP 
Sbjct: 423 NVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPM 482

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            P  +VW ALL    +HGK ++     ++L +++P D   +V+++N+L+  GRW E  +V
Sbjct: 483 RPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDV 542

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           RK MK+  ++KE G SWI  K  VHVF A D  H+R  +I   LA+L ++ +  GY+P  
Sbjct: 543 RKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMPDT 602

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
              L++V + EK   ++ HSEKLALAFGL+   P    +RI KNLRIC DCH +FK++S 
Sbjct: 603 QYSLYDVEEEEKETEVFQHSEKLALAFGLIH-IPPSVPIRITKNLRICVDCHRAFKFVSG 661

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +V REI+VRD NR+H F    C+C D W
Sbjct: 662 IVGREIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 132/508 (25%), Positives = 221/508 (43%), Gaps = 27/508 (5%)

Query: 14  TSTDPRI---VHARALK--SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           +S  PR+    HARAL+  S      I  +L+  YSK +L + +       P+P +VS+T
Sbjct: 21  SSRSPRLGRAAHARALRLLSPGLPPFICAHLVNLYSKLDLPAAAASALASDPNPTVVSFT 80

Query: 69  ALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA-SLSHAFLFGLSLHS 124
           A IS    H+    +L+ F +MLR   +   PN  T  S FK  A +       G  +H+
Sbjct: 81  AFISGAAQHARPLAALSAFAAMLR---VGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHA 137

Query: 125 LSLKLS-LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
           L+L+   L   PF   A +  Y +      A+++F+E+  R+V+ + A++     + R +
Sbjct: 138 LALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPL 197

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           ++   +  +R +     +  V     A A    +      HG  V  G D +V V   ++
Sbjct: 198 ETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMV 257

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           D YGK      AR VFD  + V NS++W +M+  YAQ G +   L ++      G  P +
Sbjct: 258 DFYGKCRCAGKARAVFD-GMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTD 316

Query: 304 YSFLAVLTALCNAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           +   +VLT    AGL G +  + +  + VR  ++  +   + L+   G+ G +EDAE++ 
Sbjct: 317 FMVSSVLTTC--AGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVF 374

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
           + MP E +   W A++   A  G A  A  +   +I       + ++ + NV++   R  
Sbjct: 375 LDMP-ERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPN-HITLVNVITACSRGG 432

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
              +  ++    R R  G     E    V   L    M ER  +I  ++           
Sbjct: 433 LTKDGYELFDTMRERF-GVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPS------ 485

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKL 510
            + VW  +L       K E     SEKL
Sbjct: 486 -ISVWGALLGACKMHGKTELGRIASEKL 512


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 201/558 (36%), Positives = 311/558 (55%), Gaps = 7/558 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA  + S     RS+   LI+    +  ++Y+ RLF  +P+P+   + +L+   S    
Sbjct: 110 VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 169

Query: 80  SLNIFLSMLRHPTLSFLPNQR-TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
           S++  L   R    S  P    T  S+ K CA LS A   G  +HS  +        +  
Sbjct: 170 SIDTVL-FYRRMLFSGAPQSNYTFTSVIKACADLS-ALRLGKEIHSHVMVCGYGSDMYVQ 227

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +AL+  Y++      AKKVFD + +R ++ + ++I G+ QN    +S+ +F  M  S   
Sbjct: 228 AALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQ 287

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                +   L + ++L A++    +H +A  +G D NV++GT LI+ Y + G VS AR V
Sbjct: 288 PDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREV 347

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD ++   N + W AM++GY   G     +ELF  +   G  P+  +F+AVL+A  ++GL
Sbjct: 348 FD-SMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGL 406

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA-ERIAMAMPFEPDAAVWRAL 377
             +  +    MK  Y L PG+EH  C++   GRAG L DA + I   +P EP  AVW ++
Sbjct: 407 IDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSM 466

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    +H   D+  K+ + ++ + P +   YV+++N+ +  GR D V  VR +M  RR++
Sbjct: 467 LGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLK 526

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K+ G S IE+  K ++F  GD+ H +T  IY  L ELM  C   GYVP  + ++H++ + 
Sbjct: 527 KQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEE 586

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           E+  AL YHSEKLALAFGL+    +G+T+RIVKNLRIC DCH + K+IS + +REI+VRD
Sbjct: 587 ERDYALRYHSEKLALAFGLLK-TNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRD 645

Query: 558 VNRYHRFLNGSCTCGDLW 575
             R+H F +GSC+C D W
Sbjct: 646 KFRFHHFKDGSCSCLDYW 663


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 193/567 (34%), Positives = 317/567 (55%), Gaps = 9/567 (1%)

Query: 12  QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           Q TS     + A  L+ ++    I   L+  Y+K   L Y+ R+F+ +P  N V+W+ALI
Sbjct: 220 QGTSIHAYCLRA-CLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALI 278

Query: 72  SAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
                      + N+F  ML    L FL +  ++AS  + CASL+   + G  LH+L  K
Sbjct: 279 GGFVLCDRMTEAFNLFKDMLVE-GLCFL-SATSVASALRVCASLADLHM-GTQLHALIAK 335

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
             +H      ++L+  Y++    + A   FDEI  +D + YGA++ G  QN +  ++  V
Sbjct: 336 SGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLV 395

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           F  M++ ++   +  +   + A + LAA++  +  HG  ++ GL     +   LID Y K
Sbjct: 396 FKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAK 455

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G +  +R+VFD+ +   + ++WN M+AGY   G       LF  ++ +GFAPD+ +F+ 
Sbjct: 456 CGKIDLSRQVFDK-MPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFIC 514

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           ++ A  ++GL  E + W + M  +Y + P +EHY C++  + R G L++A +   +MP +
Sbjct: 515 LIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLK 574

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
            D  VW ALL    IH   D+  ++ + +  + P     +V+++N+ S  GR+DE AEVR
Sbjct: 575 ADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVR 634

Query: 429 KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
            + K +  +K  G SWIE+ G +H F+ GD+ H  + DIY +L  +M + ++LGY     
Sbjct: 635 IIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTS 694

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
            +L ++ + EK +AL YHSEKLA+AFG++S     KT+ + KNLR+C DCH + KY++ V
Sbjct: 695 FVLQDLEEEEKEKALLYHSEKLAIAFGVLS-LNEDKTIFVTKNLRVCGDCHTAIKYMTLV 753

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
             R I+VRD NR+H F NG C+CG+ W
Sbjct: 754 RNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 178/390 (45%), Gaps = 21/390 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPL--SLNIFLSML 88
           D+  +   +  +     L+ + ++F+ IP+P+  ++ ALI A+S   P   +++++ SML
Sbjct: 33  DKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R       PN+ T   + K C++L      G ++H+ +    LH   F  +AL+  Y R 
Sbjct: 93  R---FRVAPNKYTFPFVLKACSALVD-LRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRC 148

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGA 207
                A+ VF ++  RDVV + AM+ G+A +     +++   DM+    +      +   
Sbjct: 149 ARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSL 208

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRN---VIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           L   A+  A+ Q   IH + + + L++N   V++GT L+D Y K   +  A RVF   + 
Sbjct: 209 LPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVF-HGMP 267

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF----APDEYSFLAVLTALCNAGLAG 320
           V N + W+A++ G+      +    LF  + + G     A    S L V  +L +  +  
Sbjct: 268 VRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGT 327

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           +    I +  +   L         L+S   +AG + +A      +  + D   + ALLS 
Sbjct: 328 QLHALIAKSGIHADLTAS----NSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSG 382

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVI 410
              +GKA+ A  + K++   N   D A ++
Sbjct: 383 CVQNGKAEEAFLVFKKMQACNMEPDIATMV 412


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 193/567 (34%), Positives = 317/567 (55%), Gaps = 9/567 (1%)

Query: 12  QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           Q TS     + A  L+ ++    I   L+  Y+K   L Y+ R+F+ +P  N V+W+ALI
Sbjct: 220 QGTSIHAYCLRA-CLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALI 278

Query: 72  SAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
                      + N+F  ML    L FL +  ++AS  + CASL+   + G  LH+L  K
Sbjct: 279 GGFVLCDRMTEAFNLFKDMLVE-GLCFL-SATSVASALRVCASLADLHM-GTQLHALIAK 335

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
             +H      ++L+  Y++    + A   FDEI  +D + YGA++ G  QN +  ++  V
Sbjct: 336 SGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLV 395

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           F  M++ ++   +  +   + A + LAA++  +  HG  ++ GL     +   LID Y K
Sbjct: 396 FKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAK 455

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G +  +R+VFD+ +   + ++WN M+AGY   G       LF  ++ +GFAPD+ +F+ 
Sbjct: 456 CGKIDLSRQVFDK-MPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFIC 514

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           ++ A  ++GL  E + W + M  +Y + P +EHY C++  + R G L++A +   +MP +
Sbjct: 515 LIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLK 574

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
            D  VW ALL    IH   D+  ++ + +  + P     +V+++N+ S  GR+DE AEVR
Sbjct: 575 ADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVR 634

Query: 429 KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
            + K +  +K  G SWIE+ G +H F+ GD+ H  + DIY +L  +M + ++LGY     
Sbjct: 635 IIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTS 694

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
            +L ++ + EK +AL YHSEKLA+AFG++S     KT+ + KNLR+C DCH + KY++ V
Sbjct: 695 FVLQDLEEEEKEKALLYHSEKLAIAFGVLS-LNEDKTIFVTKNLRVCGDCHTAIKYMTLV 753

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
             R I+VRD NR+H F NG C+CG+ W
Sbjct: 754 RNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 178/390 (45%), Gaps = 21/390 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPL--SLNIFLSML 88
           D+  +   +  +     L+ + ++F+ IP+P+  ++ ALI A+S   P   +++++ SML
Sbjct: 33  DKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R       PN+ T   + K C++L      G ++H+ +    LH   F  +AL+  Y R 
Sbjct: 93  R---FRVAPNKYTFPFVLKACSALVD-LRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRC 148

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGA 207
                A+ VF ++  RDVV + AM+ G+A +     +++   DM+    +      +   
Sbjct: 149 ARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSL 208

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRN---VIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           L   A+  A+ Q   IH + + + L++N   V++GT L+D Y K   +  A RVF   + 
Sbjct: 209 LPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVF-HGMP 267

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF----APDEYSFLAVLTALCNAGLAG 320
           V N + W+A++ G+      +    LF  + + G     A    S L V  +L +  +  
Sbjct: 268 VRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGT 327

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           +    I +  +   L         L+S   +AG + +A      +  + D   + ALLS 
Sbjct: 328 QLHALIAKSGIHADLTAS----NSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSG 382

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVI 410
              +GKA+ A  + K++   N   D A ++
Sbjct: 383 CVQNGKAEEAFLVFKKMQACNMEPDIATMV 412


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/548 (35%), Positives = 304/548 (55%), Gaps = 17/548 (3%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS---AHSNSPLSLNIFLSMLRHP 91
           +   LI+ YSK   ++ +  LF  I  P+++++ A+IS   A+  +  S+ +F  +L   
Sbjct: 246 VLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELL--- 302

Query: 92  TLSFLPNQR----TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
                  +R    T+  L    +   H  L   S+H   +K  +   P   +A    Y++
Sbjct: 303 ----FSGERVSSSTIVGLIPLHSPFGHLHL-ACSIHGFCVKSGIILNPTVSTAFTAIYNK 357

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
               D A+ +FDE  E+ VV + AMI G+ QN     ++S+F +M  ++       ++  
Sbjct: 358 LNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTI 417

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A A+L ++   + +H       L+ N+ V T L+D Y K G +S+A ++FD ++S  N
Sbjct: 418 LSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFD-SMSEKN 476

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
           ++ WN M+ GY   G     L+L++ +   G+ P   +FL+VL A  +AGL GE E+   
Sbjct: 477 TVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFH 536

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            M  +Y++EP +EHY C++  +GR+G+LE A      MP EP  AVW  LL    IH   
Sbjct: 537 NMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDT 596

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
           D+A    +RL +++P     YV+++N+ S    + + A +R+V+K R++ K  G + IEV
Sbjct: 597 DIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEV 656

Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
            G  HVF++GDR H    DIY KL +L  +   +GY       LH+V + EK  A+  HS
Sbjct: 657 NGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHS 716

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           EKLA+AFGL++  P G  +RI+KNLR+C DCH + K+IS++ ER IVVRD NR+H F +G
Sbjct: 717 EKLAIAFGLITTEP-GNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDG 775

Query: 568 SCTCGDLW 575
            C+CGD W
Sbjct: 776 ICSCGDYW 783



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 172/398 (43%), Gaps = 12/398 (3%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSF 95
           L+  Y K + + Y+ ++F+ +P  + V W  +I+    +     S+ +F  M+       
Sbjct: 149 LVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVAD---GV 205

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
             +  T+ ++    A L      G+ +  L+LK+      +  + L+  YS+    + A+
Sbjct: 206 RVDSSTVTAVLPAAAELQE-LKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTAR 264

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            +F  I   D++ Y AMI GF  N     S+ +F ++  S    +   + G +   +   
Sbjct: 265 LLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFG 324

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            +     IHG  V SG+  N  V T     Y K   +  AR +FDE+      +AWNAM+
Sbjct: 325 HLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEK-TVVAWNAMI 383

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           +GY Q G   T + LF  +    F P+  +   +L+A    G +    KW+  +     L
Sbjct: 384 SGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG-SLSFGKWVHHLIKSENL 442

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           EP +   T L+    + G + +A ++  +M  E +   W  ++    +HG    A K+  
Sbjct: 443 EPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNTVTWNTMIFGYGLHGYGHEALKLYN 501

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
            ++ +  Y+ SA V   +VL        V E  ++  +
Sbjct: 502 EMLHLG-YNPSA-VTFLSVLYACSHAGLVGEGEEIFHN 537



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 197/497 (39%), Gaps = 57/497 (11%)

Query: 55  LFNHIPSPNIVSWTALISAHS--NSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           LF  +P P+I  +  L+   S  +SP S ++++  + R+  LS  P+  T A     C++
Sbjct: 66  LFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLS--PDNFTYAFAVAACSN 123

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
             H  L    LH+ S+        F GSALV  Y +F     A+KVFD + ERD V +  
Sbjct: 124 DKHLML----LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNT 179

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           MI G  +N    DS+ +F +M +  V      V+  L AAAEL  ++    I   A+  G
Sbjct: 180 MINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIG 239

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
                 V TGLI  Y K G V+ AR +F   ++  + IA+NAM++G+   G     ++LF
Sbjct: 240 FGFCDYVLTGLISLYSKCGDVNTARLLF-RRINRPDLIAYNAMISGFTANGGTECSVKLF 298

Query: 292 HLLEMRG--------------FAPDEYSFLA------------VLTALCNAGLAGESEKW 325
             L   G               +P  +  LA            +L    +        K 
Sbjct: 299 RELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKL 358

Query: 326 IERMKVRYKLEPGLEH----YTCLISAMGRAGRLEDAERI---AMAMPFEPDAAVWRALL 378
            E    R+  +   E     +  +IS   + G  E A  +    M   F P+A     +L
Sbjct: 359 NEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTIL 418

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA---------NVLSGVGRWDEVAEVRK 429
           S  A  G      K    LI     + + YV  A         N+      +D ++E   
Sbjct: 419 SACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNT 477

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
           V  +  +   G   +    G   + L  + +H            ++  C   G V   +E
Sbjct: 478 VTWNTMIFGYGLHGY----GHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEE 533

Query: 490 MLHNVGDREKREALWYH 506
           + HN+ ++ + E L  H
Sbjct: 534 IFHNMVNKYRIEPLIEH 550


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 201/537 (37%), Positives = 301/537 (56%), Gaps = 12/537 (2%)

Query: 19  RIVHARALKSSQADRS-IYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS- 75
           RIVHA  + S   D   +  N+I N Y+K   L  + R+F+ +P+ ++V+WTALI+  S 
Sbjct: 107 RIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQ 166

Query: 76  -NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
            N P  +L +F  MLR   L   PN  TL+SL K   S  H    G  LH+  LK     
Sbjct: 167 NNRPRDALLLFPQMLR---LGLQPNHFTLSSLLKASGS-EHGLDPGTQLHAFCLKYGYQS 222

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             + GSALV  Y+R    D A+  FD +  +  V + A+I G A+      +L +   M+
Sbjct: 223 SVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQ 282

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             +   T +  S    A A + A+EQ + +H H + SGL     +G  L+D Y KAG + 
Sbjct: 283 RKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSID 342

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA+RVFD  L   + ++WN M+ G AQ G     L+ F  +   G  P+E SFL VLTA 
Sbjct: 343 DAKRVFDR-LVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTAC 401

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            ++GL  E   + E MK +YK+EP + HY   +  +GR G L+ AER    MP EP AAV
Sbjct: 402 SHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAV 460

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL    +H   ++     +R  +++P+D    ++++N+ +  GRW +VA+VRK+MK+
Sbjct: 461 WGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKE 520

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
             V+K+   SW+E++  VH+F+A D  H + ++I  K  E+  + + +GYVP    +L  
Sbjct: 521 SGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVLLF 580

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           V  +E+ E L YHSEKLALAF L++  P G  +RI KN+R+C DCH + K++S++ E
Sbjct: 581 VDQQEREEKLQYHSEKLALAFALLN-TPTGSPIRIKKNIRVCGDCHAAIKFVSKIYE 636



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 95/188 (50%), Gaps = 6/188 (3%)

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           S  L+    L  +EQ R++H H V S  LD ++++   +++ Y K G + DARR+FDE +
Sbjct: 91  SKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDE-M 149

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA-GLAGES 322
              + + W A++AG++Q       L LF  +   G  P+ ++  ++L A  +  GL   +
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGT 209

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
           +  +    ++Y  +  +   + L+    R G ++ A+     MP + + + W AL+S  A
Sbjct: 210 Q--LHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS-WNALISGHA 266

Query: 383 IHGKADMA 390
             G+ + A
Sbjct: 267 RKGEGEHA 274


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/559 (34%), Positives = 300/559 (53%), Gaps = 8/559 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  ALK     D  +  +    Y K+     +  +F+ +P  N+ +W A IS       
Sbjct: 130 IHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRR 189

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           SL+  ++      +   PN  T  +    C  +    L G  LH+  ++    +     +
Sbjct: 190 SLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNL-GRQLHAFIVRCGYKEDVSVAN 248

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
            L+ FY +     +A+ VF+ I  R +VV + +M+    QN     +  VF   R  +V 
Sbjct: 249 GLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARK-EVE 307

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
            T + +S  L A AEL  +E  R +H  AV + ++ N+ VG+ L+D YGK G + +A +V
Sbjct: 308 PTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQV 367

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM--RGFAPDEYSFLAVLTALCNA 316
           F E L   N + WNAM+ GYA QGD    L LF  + +   G  P   + +++L+     
Sbjct: 368 FSE-LPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRV 426

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G      +  E M++ Y +EPG EH+ C++  +GR+G ++ A      M  +P  +VW A
Sbjct: 427 GAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGA 486

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    +HGK ++     ++L +++  D   +V+++N+L+  GRW+E   VRK MKD  +
Sbjct: 487 LLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGI 546

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G SWI VK ++HVF A D  H+R  +I   L +L    +  GYVP  +  L ++ D
Sbjct: 547 KKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLED 606

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK   +WYHSEK+ALAFGL++  P+G  +RI KNLRIC DCH + K+ISR+V REI+VR
Sbjct: 607 EEKASEVWYHSEKIALAFGLIA-LPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVR 665

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D +R+HRF +G C+C D W
Sbjct: 666 DNHRFHRFKDGCCSCKDYW 684



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 195/424 (45%), Gaps = 14/424 (3%)

Query: 19  RIVHARALKS--SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--H 74
           R +HA  +++  +     + N+L+  YSK +LL+ +  + +      +V+WT+LIS   H
Sbjct: 26  RTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVH 85

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           +   L   +  + +R   +   PN  T   +FK  A +    + G  +H L+LK  +   
Sbjct: 86  NRRFLPALLHFTNMRRDNVQ--PNDFTFPCVFKASAFVQIP-MTGKQIHGLALKGGMIYD 142

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F G +    Y +     +A  +FDE+ +R++  + A I    Q+ R +D++  F +   
Sbjct: 143 VFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLC 202

Query: 195 --SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
              +  S  +C    L A  ++  +   R +H   V  G   +V V  GLID YGK G +
Sbjct: 203 VHGEPNSITFC--AFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDI 260

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A  VF+   +  N ++W +M+A   Q  ++     +F L   +   P ++   +VL+A
Sbjct: 261 VSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVF-LQARKEVEPTDFMISSVLSA 319

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
               G   E  + +  + V+  +E  +   + L+   G+ G +E+AE++   +P E +  
Sbjct: 320 CAELG-GLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELP-ERNLV 377

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            W A++   A  G  DMA ++ + +   +     +YV + ++LS   R   V    ++ +
Sbjct: 378 TWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFE 437

Query: 433 DRRV 436
             R+
Sbjct: 438 SMRL 441



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 4/282 (1%)

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP-FCGSALVHFYSRFRSPDNAKKV 157
           Q  L SL ++  S +H  + G ++H+  ++  +   P F  + LV+ YS+    ++A+ V
Sbjct: 6   QNLLGSLLESAVS-THCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHV 64

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
                 R VV + ++I G   N R + +L  F +MR  +V    +      +A+A +   
Sbjct: 65  LSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIP 124

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
              + IHG A+  G+  +V VG    D Y K G   DA  +FDE +   N   WNA ++ 
Sbjct: 125 MTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDE-MPQRNLATWNAYISN 183

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
             Q       +  F         P+  +F A L A C   +     + +    VR   + 
Sbjct: 184 AVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNA-CVDMVRLNLGRQLHAFIVRCGYKE 242

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +     LI   G+ G +  AE +   +    +   W ++L+
Sbjct: 243 DVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLA 284


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 317/563 (56%), Gaps = 18/563 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSN---LLSYSLRLFNHIPSPNIVSWTALISAH-- 74
           +H+ AL+   ++D  +   L+  Y+KS+    L  +  +FN +P  N+++WTAL+S +  
Sbjct: 277 LHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQ 336

Query: 75  --SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
             S     + +F  ML        PN  T +S+ K CA+L      G  +H+  +K +L 
Sbjct: 337 RGSQDNQVMILFCKMLNE---GIRPNHITYSSMLKACANLGDQD-SGRQIHTHCVKSNLA 392

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           D    G+ALV  Y+   S + A+  FD++ E+++V +   + G  +++   D       +
Sbjct: 393 DLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDY-----QI 447

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
              ++G + +     + AAA +  + + + +H  ++ +G   +  +G  L+  Y + G +
Sbjct: 448 ERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYL 507

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DA +VFDE ++  N I+W +M++G A+ G  +  LELFH +   G  P++ +++AVL+A
Sbjct: 508 VDACQVFDE-MNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSA 566

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  E ++    M+  + L P +EHY C++  +GR+G +EDA      MP + DA 
Sbjct: 567 CSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDAL 626

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW+ LL     H   D+       +I + P D + YV+++N+ +  G WD+VA +R +M+
Sbjct: 627 VWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMR 686

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           D+ + KE G SW+ V   +H F AGD  H + E+IYTKL  L+ E + +GYVP    +LH
Sbjct: 687 DKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLH 746

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ D  K   L  HSEK+A+AFGL+S     K +RI KNLR+C DCH + KY+S+   RE
Sbjct: 747 DMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGRE 806

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I++RD NR+HR  +G C+CG+ W
Sbjct: 807 IILRDSNRFHRMKDGECSCGEYW 829



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 164/339 (48%), Gaps = 15/339 (4%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP--NIVSWTALISAHSNSPL---SLNIF 84
           + D  + N+L+T YSK + ++ +  +F+ +P    ++VSWTA+ S  S +     +L +F
Sbjct: 81  ETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLF 140

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF-CGSALVH 143
              L       LPN  TL +  + C +     L G ++  L  KL         G AL+ 
Sbjct: 141 GETLEE---GLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALID 197

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            +++       ++VFD + ER VV +  +I  +AQ+    +++ +F DM  +      Y 
Sbjct: 198 MFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYT 257

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA---GIVSDARRVFD 260
           +S  L A  EL +    + +H  A+  GL+ +  V  GL+D Y K+     + +AR VF+
Sbjct: 258 LSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFN 317

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQ-STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
             +   N +AW A+++GY Q+G Q + V+ LF  +   G  P+  ++ ++L A  N G  
Sbjct: 318 R-MPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLG-D 375

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
            +S + I    V+  L         L+S    +G +E+A
Sbjct: 376 QDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEA 414



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 18/200 (9%)

Query: 221 RVIHGHAVVSG--LDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAG 277
           R + GH + +G  L+ + +V   L+  Y K   V+ AR VFD   + + + ++W AM + 
Sbjct: 67  RALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASC 126

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG----LAGESEKWIERMKVRY 333
            ++ G ++  L LF      G  P+ ++  A  T  C A     LAG +      + + +
Sbjct: 127 LSRNGAEAEALRLFGETLEEGLLPNAFTLCAA-TQACFASELFHLAGGA-----VLGLVF 180

Query: 334 KL---EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           KL      +     LI    + G L    R+   + FE    VW  L++  A  G +D A
Sbjct: 181 KLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGL-FERTVVVWTLLITRYAQSGYSDEA 239

Query: 391 SKMGKRLIDINPYDDSAYVI 410
            ++   +++ N +    Y +
Sbjct: 240 VELFLDMLE-NGFQPDQYTL 258


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/565 (35%), Positives = 313/565 (55%), Gaps = 31/565 (5%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSN---SPLSLNIFLSML 88
           +N ++T Y++S     +  LF ++   NI    ++W+A+I+ ++    S  +L+ F  M+
Sbjct: 328 WNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMI 387

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK---LSLHDKP---------F 136
              +    PN  T+ SL   CASL  A   G+ +H+ SLK   LSL +            
Sbjct: 388 LDGSE---PNSVTIISLLSACASLG-ALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLM 443

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
             +AL+  YS+ RS   A+ +FD I  RER+VV +  MI G+AQ     D+L +F++M S
Sbjct: 444 VYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMIS 503

Query: 195 SD--VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI--VGTGLIDGYGKAG 250
               V    Y +S  L A A LAA+   + IH +          +  V   LID Y K G
Sbjct: 504 KPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCG 563

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V  AR VFD ++   N ++W +MM+GY   G     L++F  ++  GF PD+ SFL +L
Sbjct: 564 DVDTARNVFD-SMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  ++G+  +   + + M+  Y +    EHY C+I  + R GRL+ A +    MP EP 
Sbjct: 623 YACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPS 682

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A +W ALLS   +H   ++A     +L+++   +D +Y +++N+ +   RW +VA +R++
Sbjct: 683 AVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQL 742

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK   ++K  G SW++ K     F  GDR H  + +IY+ L  L+   + +GYVP  +  
Sbjct: 743 MKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFA 802

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           LH+V D EK   L  HSEKLALA+GL++ +P G  +RI KNLR+C DCH +F YIS++V+
Sbjct: 803 LHDVDDEEKNNLLSEHSEKLALAYGLLTTSP-GCPIRITKNLRVCGDCHSAFTYISKIVD 861

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
            EI+VRD +R+H F NGSC+CG  W
Sbjct: 862 HEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 154/342 (45%), Gaps = 20/342 (5%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHI-PSPNIVSWTALISAH---SNSPLSLNIFLSML 88
           +S+   ++ +Y        +L +   + PSP  V W  L+  H    +   ++ +   ML
Sbjct: 83  KSLGTGVVASYLACGATKDALSVLERVTPSP-AVWWNLLVREHIKEGHLDRAIGVSCRML 141

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R  T    P+  TL    K C  L  ++  G +LH L          F  +ALV  YSR 
Sbjct: 142 RAGTK---PDHFTLPYALKACGELP-SYCCGRALHGLICCNGFESNVFVCNALVAMYSRC 197

Query: 149 RSPDNAKKVFDEIRER---DVVCYGAMIVGFAQNSRLVDSLSVFADM------RSSDVGS 199
            S ++A  VFDEI  +   DV+ + +++    + S    +L +F++M      ++++  S
Sbjct: 198 GSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERS 257

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            +  +   L A A L A+ Q + IH +A+ +G   +  V   LID Y K G ++DA +VF
Sbjct: 258 DIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVF 317

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +  +   + ++WNAM+ GY Q G+     ELF  +       D  ++ AV+      G +
Sbjct: 318 NV-MEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCS 376

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
            E+    ++M +    EP       L+SA    G L     I
Sbjct: 377 QEALDAFQQM-ILDGSEPNSVTIISLLSACASLGALSQGMEI 417



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS---NSPLSLNIFLSMLR 89
           +YN LI  YSK      +  +F+ IP    N+V+WT +I  ++   +S  +L IF  M+ 
Sbjct: 444 VYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMIS 503

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--FCGSALVHFYSR 147
            P  +  PN  T++ +   CA L+ A   G  +H+   +   ++    F  + L+  YS+
Sbjct: 504 KP-YAVAPNAYTISCILMACAHLA-ALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSK 561

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
               D A+ VFD + +R+ V + +M+ G+  + R  ++L +F  M+ +
Sbjct: 562 CGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKA 609



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 111/250 (44%), Gaps = 10/250 (4%)

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+ +V  Y    +  +A  V + +     V +  ++    +   L  ++ V   M  +  
Sbjct: 86  GTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGT 145

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               + +  AL+A  EL +    R +HG    +G + NV V   L+  Y + G + DA  
Sbjct: 146 KPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASL 205

Query: 258 VFDE--NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM--RGFAPDEYSFLAVLTAL 313
           VFDE     + + I+WN+++A + +  +  T LELF  + M     A +E S +  +  +
Sbjct: 206 VFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNI 265

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGL--EHYTC--LISAMGRAGRLEDAERIAMAMPFEP 369
             A  + ++   I+ +   Y +  G   + + C  LI    + G + DA ++   M F+ 
Sbjct: 266 LPACASLKALPQIKEIH-SYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK- 323

Query: 370 DAAVWRALLS 379
           D   W A+++
Sbjct: 324 DVVSWNAMVT 333



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 21  VHARALKSSQADRSIY---NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           +HA   +  + + S+Y   N LI  YSK   +  +  +F+ +P  N VSWT+++S    H
Sbjct: 534 IHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMH 593

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
                +L+IF  M +     F+P+  +   L   C+
Sbjct: 594 GRGKEALDIFDKMQK---AGFVPDDISFLVLLYACS 626


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 192/562 (34%), Positives = 316/562 (56%), Gaps = 12/562 (2%)

Query: 21  VHARALKS----SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH-- 74
           VHA  L++    ++    I   L+  Y+K   L Y+ R+F+ +   N V+W+ALI     
Sbjct: 223 VHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVL 282

Query: 75  -SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                 + N+F  ML    + FL +  ++AS  + CASL+     G  LH+L  K  +H 
Sbjct: 283 CDRMTEAFNLFKDMLVE-GMCFL-SATSVASALRVCASLAD-LRMGTQLHALLAKSGIHA 339

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               G++L+  Y++    + A  +FDEI  +D + YGA++ G+ QN +  ++  VF  M+
Sbjct: 340 DLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQ 399

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           + +V   +  +   + A + LAA++  R  HG  ++ GL     +   LID Y K G + 
Sbjct: 400 ACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRID 459

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            +R+VFD+ +   + ++WN M+AGY   G       LF  ++ +GF PD+ +F+ ++ A 
Sbjct: 460 LSRQVFDK-MPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAAC 518

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            ++GL  E + W + M  +Y + P +EHY C++  + R G L++A +   +MP + D  V
Sbjct: 519 SHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRV 578

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL    IH   D+  ++ + +  + P     +V+++N+ S  GR+DE AEVR + K 
Sbjct: 579 WGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKV 638

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           +  +K  G SWIE+ G +H F+ GD+ H  + DIY +L  ++ + ++LGY      +L +
Sbjct: 639 KGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQD 698

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           + + EK +AL YHSEKLA+AFG++S     KT+ + KNLR+C DCH + KY++ V  R I
Sbjct: 699 LEEEEKEKALLYHSEKLAIAFGVLS-LNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTI 757

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           +VRD NR+H F NG C+CGD W
Sbjct: 758 IVRDANRFHHFKNGQCSCGDFW 779



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 178/375 (47%), Gaps = 25/375 (6%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHS-NSPL--SLNIFLSML--RHPTLSFLPNQRTLA 103
           L+ + ++F+ IP+P+  ++ ALI A+S   P   +++++ SML  R P     PN+ T  
Sbjct: 49  LALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVP-----PNKYTFP 103

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
            + K C++L+     G ++H+ +  + LH   F  +AL+  Y R      A  VF ++  
Sbjct: 104 FVLKACSALAD-LCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPM 162

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGALRAAAELAAMEQCRV 222
           RDVV + AM+ G+A +     +++   DM+    +      +   L   A+  A+ Q   
Sbjct: 163 RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTS 222

Query: 223 IHGHAVVSGLDRN---VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
           +H + + + LD+N   V++GT L+D Y K   +  A RVF   ++V N + W+A++ G+ 
Sbjct: 223 VHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVF-HGMTVRNEVTWSALIGGFV 281

Query: 280 QQGDQSTVLELFHLLEMRGF----APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
                +    LF  + + G     A    S L V  +L +  +  +    + +  +   L
Sbjct: 282 LCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADL 341

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
             G      L+S   +AG + +A  +   +  + D   + ALLS    +GKA+ A  + K
Sbjct: 342 TAG----NSLLSMYAKAGLINEATMLFDEIAIK-DTISYGALLSGYVQNGKAEEAFLVFK 396

Query: 396 RLIDINPYDDSAYVI 410
           ++   N   D A ++
Sbjct: 397 KMQACNVQPDIATMV 411


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 205/559 (36%), Positives = 318/559 (56%), Gaps = 11/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
           +HA  LK   Q    + +NLI  YSK+ L  +SL++F+  P  +  +W+++ISA + +  
Sbjct: 47  LHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEA 106

Query: 79  --LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             L+L  F  ML        P+     S  K C  L  + + G S+H L++K   +   F
Sbjct: 107 PLLALQFFRRMLND---GVRPDDHIYPSATKACGFLRRSDV-GKSVHCLAVKTGYYCDVF 162

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GS+LV  Y++     +A+ +FDE+ ER+VV +  MI G+AQ    V++L++F      D
Sbjct: 163 VGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIED 222

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    +  S  +R  +    +E  ++IHG  +    D +  VG+ LI  Y K G++  A 
Sbjct: 223 VDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAY 282

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VFDE +   N   WN+M+   AQ      V  LF  +   G  P+   FL+VL A  +A
Sbjct: 283 QVFDE-IPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHA 341

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  +  ++   M+  Y +EP  EHY  L+  +GRAG+L++A  +   MP  P  +VW A
Sbjct: 342 GLVEKGREYFSLMR-DYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGA 400

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+   IH   +MA+ +  R+++++      +V+++N  +  GR++E A +RK+++DR V
Sbjct: 401 LLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGV 460

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE G SW+E   KVH F AGDR H +  +IY KL EL EE E+ GYV     +L  V  
Sbjct: 461 KKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDG 520

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK E + YHSE+LA+AFGL++  P G+ +R++KNLR+C DCH + K++S+   R ++VR
Sbjct: 521 EEKNETIRYHSERLAIAFGLITFPP-GRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVR 579

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+HRF +G C+CGD W
Sbjct: 580 DNNRFHRFEDGKCSCGDYW 598



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 4/291 (1%)

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
           SF  N R + +L  +  + S +   GL LH+  LK  L   P     L++ YS+ + P  
Sbjct: 20  SFEQNYRQICNLLLS-FTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLF 78

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           + +VFDE  ++    + ++I  FAQN   + +L  F  M +  V    +    A +A   
Sbjct: 79  SLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGF 138

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           L   +  + +H  AV +G   +V VG+ L+D Y K G + DAR +FDE +   N ++W+ 
Sbjct: 139 LRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDE-MPERNVVSWSG 197

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           M+ GYAQ  D    L LF    +     ++++F +V+  +C++    E  K I  + ++ 
Sbjct: 198 MIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIR-VCSSSTFLELGKLIHGLCLKM 256

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
             +      + LIS   + G +E A ++   +P   +  +W ++L   A H
Sbjct: 257 SFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTR-NLGLWNSMLIACAQH 306


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 184/541 (34%), Positives = 304/541 (56%), Gaps = 4/541 (0%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           +YN L+       ++  +L+LF  +   + VSW+A+I   + + +               
Sbjct: 204 MYNTLMGGLLACGMIEDALQLFRGMEKDS-VSWSAMIKGLAQNGMEKEAIECFREMKIEG 262

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
              +Q    S+   C  L  A   G  +H+  ++ +L D  + GSAL+  Y + +    A
Sbjct: 263 LKMDQYPFGSVLPACGGLG-AINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYA 321

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           K VFD +++++VV + AM+VG+ Q  R  +++ +F DM+ S +    Y +  A+ A A +
Sbjct: 322 KTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANI 381

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           +++E+    HG A+ +GL   + V   L+  YGK G + D+ R+F+E ++V + ++W AM
Sbjct: 382 SSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNE-MNVRDEVSWTAM 440

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           ++ YAQ G     ++LF  +   G  PD  +   V++A   AGL  + +++ E M   Y 
Sbjct: 441 VSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYG 500

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           + P   HY+C+I    R+GR+E+A      MPF PDA  W  LLS     G  ++     
Sbjct: 501 IVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAA 560

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           + LI+++P+  + Y +++++ +  G+WD VA++R+ MK++ VRKE G+SWI+ KGK+H F
Sbjct: 561 ESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSF 620

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
            A D     ++ IY KL EL ++    GY P    + H+V +  K + L  HSE+LA+AF
Sbjct: 621 SADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSERLAIAF 680

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+   P G  +R+ KNLR+C DCH + K+IS V  REI+VRD  R+HRF +G+C+CGD 
Sbjct: 681 GLIF-VPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDF 739

Query: 575 W 575
           W
Sbjct: 740 W 740



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 200/461 (43%), Gaps = 62/461 (13%)

Query: 9   PQPQNTSTDPRIVHARAL-KSSQADRSIY-----------NNLITNYSKSNLLSYSLRLF 56
           P P+ T     IVHA AL +SS   R ++           NNL+  YSKS  LS   R F
Sbjct: 34  PHPE-TFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTF 92

Query: 57  NHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
             +P  + V+W  LI  +S S L   ++  + +M++  + +    + TL ++ K  +S  
Sbjct: 93  EKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNL--TRVTLMTMLKLSSSNG 150

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG--- 170
           H  L G  +H   +KL        GS L+  YS+     +AKKVF  + +R+ V Y    
Sbjct: 151 HVSL-GKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLM 209

Query: 171 ---------------------------AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
                                      AMI G AQN    +++  F +M+   +    Y 
Sbjct: 210 GGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYP 269

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
               L A   L A+   R IH   + + L  ++ VG+ LID Y K   +  A+ VFD  +
Sbjct: 270 FGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDR-M 328

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              N ++W AM+ GY Q G     +++F  ++  G  PD Y+    ++A  N     E  
Sbjct: 329 KQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGS 388

Query: 324 KWIERMKVRYKLEPGLEHY----TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           ++  +      +  GL HY      L++  G+ G ++D+ R+   M    D   W A++S
Sbjct: 389 QFHGK-----AITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DEVSWTAMVS 442

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
             A  G+A  A ++  +++ +    D   V +  V+S   R
Sbjct: 443 AYAQFGRAVEAIQLFDKMVQLGLKPDG--VTLTGVISACSR 481



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 139/334 (41%), Gaps = 65/334 (19%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H   ++   H + F  + +VH Y+  RS   A++VFD I + ++  +  +++ ++++  
Sbjct: 25  IHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGH 84

Query: 182 LVDSLSVFADMRSSDVGSTM------YCVSGALRAAAE-----------------LAAME 218
           L +    F  +   D G T       Y +SG + AA +                 L  M 
Sbjct: 85  LSEMERTFEKLPDRD-GVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTML 143

Query: 219 QC----------RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF----DENLS 264
           +           + IHG  +  G +  ++VG+ L+D Y K G +SDA++VF    D N  
Sbjct: 144 KLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTV 203

Query: 265 VLN-------------------------SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           + N                         S++W+AM+ G AQ G +   +E F  +++ G 
Sbjct: 204 MYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGL 263

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
             D+Y F +VL A    G   +  + I    +R  L+  +   + LI    +   L  A+
Sbjct: 264 KMDQYPFGSVLPACGGLGAINDGRQ-IHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAK 322

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            +   M  + +   W A++      G+A  A K+
Sbjct: 323 TVFDRMK-QKNVVSWTAMVVGYGQTGRAGEAVKI 355


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 178/425 (41%), Positives = 263/425 (61%), Gaps = 2/425 (0%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           D+A+ +FD + ER++V + AM+ G+ +  R +D+L VF +MR+  V   ++  + A+ A 
Sbjct: 182 DDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVAC 241

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIA 270
               A+ + R +H     SG+  +  + T ++D Y K G V +A RVF+   L+      
Sbjct: 242 TGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTT 301

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WN M+ G+A  G     L+LF  +E  G APD+ + + VLTA  +AG+  E   +   + 
Sbjct: 302 WNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVP 361

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            RY +EP +EHY C++   GRAGRLE+A+++   MP EPD  V  AL   S IHG  D+ 
Sbjct: 362 QRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVLGALFGASKIHGDVDLG 421

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
             +G R+I+++P +   YV++AN+L+  GRW++VA VR++M +R V KE GRS IEV+G+
Sbjct: 422 EAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVIEVQGE 481

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
           V  F  G   H R E++Y    ++M E    GYVP   ++LH + + EK   L YHSEKL
Sbjct: 482 VCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVPDTRDVLHAIAEEEKETPLLYHSEKL 541

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AFGL+   P G T+RI KNLR+CRDCHE+ K++SRV ER+IVVRD NR+H F +G C+
Sbjct: 542 AIAFGLLHTRP-GDTMRITKNLRVCRDCHEATKFVSRVFERQIVVRDRNRFHHFKDGQCS 600

Query: 571 CGDLW 575
           C D W
Sbjct: 601 CKDYW 605



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 4/229 (1%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +  ++    K  L   +  LF+ +P  N+VSW A++S +  +   L+             
Sbjct: 168 WTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGV 227

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
             N    A+    C   + A   G  +H    +  +       +A+V  Y +    + A 
Sbjct: 228 DGNVFVAATAVVACTG-AGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAW 286

Query: 156 KVFD--EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           +VF+   +  + +  +  MI GFA + R  D+L +F  M    V      +   L A A 
Sbjct: 287 RVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTACAH 346

Query: 214 LAAMEQCRVIHGHAVVS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
              + + R    +     G++  +     ++D YG+AG + +A++V  +
Sbjct: 347 AGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQD 395


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 319/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   +K+ + +D  I   L+  Y+K++ L  + ++F+ +   +++   ALIS  S+ 
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHG 382

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                +L++F   LR   L    N+ TLA++ K+ ASL  A      +H+L++K+     
Sbjct: 383 GRHDEALSLFYE-LRKEGLGV--NRTTLAAVLKSTASLEAAST-TRQVHALAVKIGFIFD 438

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + L+  Y +     +A +VF+E    D++   +MI   +Q      ++ +F +M  
Sbjct: 439 AHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLR 498

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +    + +S  L A A L+A EQ + +H H +      +   G  L+  Y K G + D
Sbjct: 499 KGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIED 558

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F  +L     ++W+AM+ G AQ G     LELF  +   G  P+  +  +VL A  
Sbjct: 559 AELAF-SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN 617

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E++++   MK  + ++   EHY+C+I  +GRAG+L+DA  +  +MPF+ +A++W
Sbjct: 618 HAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIW 677

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL  S +H   ++     ++L  + P     +V++AN  +  G W+EVA+VRK+MKD 
Sbjct: 678 GALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDS 737

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++KE   SWIEVK KVH F+ GD+ H  T++IY KL EL +   + G+VP  D  LH++
Sbjct: 738 NIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDL 797

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK   L +HSE+LA+AF L+S  P G  +R+ KNLRICRDCH +FK+IS++V REI+
Sbjct: 798 DRSEKELLLSHHSERLAVAFALLS-TPPGAPIRVKKNLRICRDCHVAFKFISKIVSREII 856

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD+NR+H F +G+C+CGD W
Sbjct: 857 IRDINRFHHFRDGTCSCGDYW 877



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 197/420 (46%), Gaps = 23/420 (5%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--- 73
           R VHA  ++    D+ ++  N L+  Y K   +  +  +F  +P  ++VSW ALIS    
Sbjct: 222 RQVHAMVVRMGY-DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 74  --HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
             H +  + L     +L+      +PN  TL+S+ K C+  + AF  G  +H   +K + 
Sbjct: 281 NGHDHRAIEL-----LLQMKYSGLVPNVFTLSSILKACSG-AGAFDLGRQIHGFMIKANA 334

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               + G  LV  Y++    D+A+KVFD +  RD++   A+I G +   R  ++LS+F +
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYE 394

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           +R   +G     ++  L++ A L A    R +H  AV  G   +  V  GLID Y K   
Sbjct: 395 LRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSC 454

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +SDA RVF+E  S  + IA  +M+   +Q       ++LF  +  +G  PD +   ++L 
Sbjct: 455 LSDANRVFEE-CSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLN 513

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A C +  A E  K +    ++ +          L+    + G +EDAE    ++P E   
Sbjct: 514 A-CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGV 571

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
             W A++   A HG    A ++  R++D  INP     ++ + +VL        V E ++
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINP----NHITMTSVLCACNHAGLVDEAKR 627



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 171/371 (46%), Gaps = 9/371 (2%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           +HA  LKS     S  N+LI+ YSK      + R+F+ IP P  VSW++L++A+SN+ L 
Sbjct: 26  LHASLLKSGSL-ASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLP 84

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
            +   +           N+  L  + K           G  +H++++        F  +A
Sbjct: 85  RSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR----LGAQVHAMAMATGFGSDVFVANA 140

Query: 141 LVHFYSRFRSPDNAKKVFDEI-RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           LV  Y  F   D+A++VF+E   ER+ V +  ++  + +N +  D++ VF +M  S +  
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T +  S  + A      +E  R +H   V  G D++V     L+D Y K G V  A  +F
Sbjct: 201 TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIF 260

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +   + ++WNA+++G    G     +EL   ++  G  P+ ++  ++L A   AG A
Sbjct: 261 -EKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG-A 318

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +  + I    ++   +        L+    +   L+DA ++   M F  D  +  AL+S
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALIS 377

Query: 380 FSAIHGKADMA 390
             +  G+ D A
Sbjct: 378 GCSHGGRHDEA 388



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 155/347 (44%), Gaps = 13/347 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSP 78
           VHA A+ +   +D  + N L+  Y     +  + R+FN   S  N VSW  L+SA+  + 
Sbjct: 122 VHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKND 181

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               ++ +F  M+        P +   + +   C   S     G  +H++ +++      
Sbjct: 182 QCGDAIQVFGEMVWS---GIQPTEFGFSCVVNACTG-SRNIEAGRQVHAMVVRMGYDKDV 237

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  +ALV  Y +    D A  +F+++ + DVV + A+I G   N     ++ +   M+ S
Sbjct: 238 FTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYS 297

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +   ++ +S  L+A +   A +  R IHG  + +  D +  +G GL+D Y K   + DA
Sbjct: 298 GLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R+VFD      + I  NA+++G +  G     L LF+ L   G   +  +  AVL +   
Sbjct: 358 RKVFDWMFH-RDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS--T 414

Query: 316 AGL-AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           A L A  + + +  + V+            LI +  +   L DA R+
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRV 461


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 177/425 (41%), Positives = 264/425 (62%), Gaps = 2/425 (0%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           D+A+ +FD + ER++V + AM+ G+ +  R +D+L VF +MR+  V   ++  + A+ A 
Sbjct: 182 DDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVAC 241

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIA 270
               A+ + R +H     SG+  +  + T ++D Y K G V +A RVF+   L+      
Sbjct: 242 TGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTT 301

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WN M+ G+A  G     L+LF  +E  G APD+ + + VLTA  +AG+  E   +   + 
Sbjct: 302 WNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVP 361

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            RY +EP +EHY C++   GRAGRLE+A+++   MP EPD  V  AL   S IHG  D+ 
Sbjct: 362 QRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVLGALFGASKIHGDVDLG 421

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
             +G R+I+++P +   YV++AN+L+  GRW++VA VR++M +R V KE GRS IEV+G+
Sbjct: 422 EAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDERNVSKEAGRSVIEVQGE 481

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
           V  F  G   H R E++Y   +++M +    GYVP   ++LH + + EK   L YHSEKL
Sbjct: 482 VCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTRDVLHAIAEEEKETPLLYHSEKL 541

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AFGL+   P G T+RI KNLR+CRDCHE+ K++SRV ER+IVVRD NR+H F +G C+
Sbjct: 542 AIAFGLLHTRP-GDTMRITKNLRVCRDCHEATKFVSRVFERQIVVRDRNRFHHFKDGQCS 600

Query: 571 CGDLW 575
           C D W
Sbjct: 601 CKDYW 605



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 4/229 (1%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +  ++    K  L   +  LF+ +P  N+VSW A++S +  +   L+             
Sbjct: 168 WTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGV 227

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
             N    A+    C   + A   G  +H    +  +       +A+V  Y +    + A 
Sbjct: 228 DGNVFVAATAVVACTG-AGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAW 286

Query: 156 KVFD--EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           +VF+   +  + +  +  MI GFA + R  D+L +F  M    V      +   L A A 
Sbjct: 287 RVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTACAH 346

Query: 214 LAAMEQCRVIHGHAVVS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
              + + R    +     G++  +     ++D YG+AG + +A++V  +
Sbjct: 347 AGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQD 395


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 191/542 (35%), Positives = 310/542 (57%), Gaps = 9/542 (1%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           N +IT   +  +++ +  LF  I   + ++WT +++  + + L   +L++F  M R   +
Sbjct: 215 NTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRM-RAEGV 273

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
               +Q T  S+   C +L+ A   G  +H+   +    D  F GSALV  YS+ RS   
Sbjct: 274 GI--DQYTFGSILTACGALA-ALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRL 330

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+ VF  +  ++++ + AMIVG+ QN    +++ VF++M+   +    + +   + + A 
Sbjct: 331 AEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCAN 390

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           LA++E+    H  A+VSGL   V V   L+  YGK G + DA R+FDE +S  + ++W A
Sbjct: 391 LASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDE-MSFHDQVSWTA 449

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           ++ GYAQ G     ++LF  +  +G  PD  +F+ VL+A   +GL  +   +   M+  +
Sbjct: 450 LVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDH 509

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            + P  +HYTC+I    R+G L+ AE     MP  PDA  W  LLS   + G  ++    
Sbjct: 510 DIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWA 569

Query: 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHV 453
            + L+ ++P + ++YV++ ++ +  G W++VA++R+ M+DR+V+KE G SWI+ K KVH+
Sbjct: 570 AENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHI 629

Query: 454 FLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALA 513
           F A D+ H  +  IY KL  L  +    GY P    +LH+V D EK   L +HSEKLA+A
Sbjct: 630 FSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIA 689

Query: 514 FGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
           FGL+   P    +RIVKNLR+C DCH + K+IS++  R+I+VRD  R+H+F NG C+CGD
Sbjct: 690 FGLIFVPPE-MPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGD 748

Query: 574 LW 575
            W
Sbjct: 749 FW 750



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 130/531 (24%), Positives = 221/531 (41%), Gaps = 86/531 (16%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           VHA  L++       Y  N L+T Y+ S LL ++ R+F+ +P  N+V+  +L+SA + + 
Sbjct: 32  VHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAG 91

Query: 79  LSLN---IFLSMLRHPTLSF------------------------------LPNQRTLASL 105
           L  +   +F S+ +   +S+                               P++ T++ +
Sbjct: 92  LVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGV 151

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR--- 162
               ++L    L G  +H   L+L      F GS LV  Y++     +A++VFDE+    
Sbjct: 152 VMVASALGDRAL-GRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKN 210

Query: 163 ----------------------------ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
                                       ERD + +  M+ G  QN    ++L VF  MR+
Sbjct: 211 VVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRA 270

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             VG   Y     L A   LAA+E+ + IH +   +  + NV VG+ L+D Y K   V  
Sbjct: 271 EGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRL 330

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  VF   +   N I+W AM+ GY Q G     + +F  ++  G  PD+++  +V+++  
Sbjct: 331 AEAVF-RRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCA 389

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           N     E  ++   + +   L P +     L++  G+ G +EDA R+   M F  D   W
Sbjct: 390 NLASLEEGAQF-HCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSW 447

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            AL+   A  GKA     + ++++      D    I   VLS   R   V          
Sbjct: 448 TALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFI--GVLSACSRSGLV---------- 495

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
               + GRS+     + H  +  D  +    D+Y++   L +  E +  +P
Sbjct: 496 ----DKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMP 542


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 299/549 (54%), Gaps = 8/549 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLS 86
           + D   +N LI+ Y+K  LL  +  LF+ +P  +  SWTA+IS    H     +L +F  
Sbjct: 133 ERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRM 192

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M R        N+ T++S     A++      G  +H   ++  L       SAL   Y 
Sbjct: 193 MKRSDNSK--SNKFTVSSALAAAAAVP-CLRIGKEIHGYIMRTGLDSDEVVWSALSDMYG 249

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +  S + A+ +FD++ +RD+V + AMI  + Q+ R  +   +FAD+  S +    +  SG
Sbjct: 250 KCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSG 309

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A A   + E  + +HG+    G D      + L+  Y K G +  A RVF E     
Sbjct: 310 VLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQP- 368

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           +  +W +++AGYAQ G     +  F LL   G  PD  +F+ VL+A  +AGL  +   + 
Sbjct: 369 DLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYF 428

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             +K +Y L    +HY C+I  + R+G+ ++AE I   M  +PD  +W +LL    IHG 
Sbjct: 429 HSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGN 488

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
             +A +  + L +I P + + YV +AN+ +  G W EVA++RK M DR V K+ G SWI 
Sbjct: 489 LKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIA 548

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           +K  VHVFL GD  H ++++I   L +L +  +  G+VP  + +LH+V D +K + L YH
Sbjct: 549 IKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYH 608

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+AFG++S  P G  +++ KNLR C DCH + K+IS++  R+I+VRD NR+H F +
Sbjct: 609 SEKLAVAFGIIS-TPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFED 667

Query: 567 GSCTCGDLW 575
           G C+C D W
Sbjct: 668 GHCSCRDYW 676



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 142/314 (45%), Gaps = 37/314 (11%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  + L+  Y++  S  +++K+FDE+ ERD+  +  +I G+A+   L ++ S+F  M   
Sbjct: 106 FILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPER 165

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRV--------------------------------I 223
           D  S    +SG +R      A+E  R+                                I
Sbjct: 166 DNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEI 225

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           HG+ + +GLD + +V + L D YGK G + +AR +FD+ +   + + W AM+  Y Q G 
Sbjct: 226 HGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVD-RDIVTWTAMIDRYFQDGR 284

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
           +    +LF  L   G  P+E++F  VL A C    + E  K +     R   +P     +
Sbjct: 285 RKEGFDLFADLLRSGIRPNEFTFSGVLNA-CANQTSEELGKKVHGYMTRVGFDPFSFAAS 343

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
            L+    + G +  AER+    P +PD   W +L++  A +G+ D A +  + L+     
Sbjct: 344 ALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQ 402

Query: 404 DDSAYVIVANVLSG 417
            D  ++    VLS 
Sbjct: 403 PD--HITFVGVLSA 414



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 178 QNSRLVDSLSVF--ADMRSSDVGSTMY--CVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
           Q +RL ++L +    D  S+ V ST+   C+   L        ++Q + +H H  +SG  
Sbjct: 51  QQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRL--------LQQGKKVHQHIKLSGFV 102

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
             + +   L++ Y K   + D++++FDE +   +  +WN +++GYA+ G       LF  
Sbjct: 103 PGLFILNRLLEMYAKCDSLMDSQKLFDE-MPERDLCSWNILISGYAKMGLLQEAKSLFDK 161

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           +  R    D +S+ A+++         E+ +    MK
Sbjct: 162 MPER----DNFSWTAMISGYVRHDRPNEALELFRMMK 194


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 319/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   +K+ + +D  I   L+  Y+K++ L  + ++F+ +   +++   ALIS  S+ 
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHG 382

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                +L++F   LR   L    N+ TLA++ K+ ASL  A      +H+L++K+     
Sbjct: 383 GRHDEALSLFYE-LRKEGLGV--NRTTLAAVLKSTASLEAAST-TRQVHALAVKIGFIFD 438

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + L+  Y +     +A +VF+E    D++   +MI   +Q      ++ +F +M  
Sbjct: 439 AHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLR 498

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +    + +S  L A A L+A EQ + +H H +      +   G  L+  Y K G + D
Sbjct: 499 KGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIED 558

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F  +L     ++W+AM+ G AQ G     LELF  +   G  P+  +  +VL A  
Sbjct: 559 AELAF-SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACN 617

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E++++   MK  + ++   EHY+C+I  +GRAG+L+DA  +  +MPF+ +A++W
Sbjct: 618 HAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIW 677

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL  S +H   ++     ++L  + P     +V++AN  +  G W+EVA+VRK+MKD 
Sbjct: 678 GALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDS 737

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++KE   SWIEVK KVH F+ GD+ H  T++IY KL EL +   + G+VP  D  LH++
Sbjct: 738 NIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDL 797

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
              EK   L +HSE+LA+AF L+S  P G  +R+ KNLRICRDCH +FK+IS++V REI+
Sbjct: 798 DRSEKELLLSHHSERLAVAFALLS-TPPGAPIRVKKNLRICRDCHVAFKFISKIVSREII 856

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD+NR+H F +G+C+CGD W
Sbjct: 857 IRDINRFHHFRDGTCSCGDYW 877



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 197/420 (46%), Gaps = 23/420 (5%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--- 73
           R VHA  ++    D+ ++  N L+  Y K   +  +  +F  +P  ++VSW ALIS    
Sbjct: 222 RQVHAMVVRMGY-DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 74  --HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
             H +  + L     +L+      +PN  TL+S+ K C+  + AF  G  +H   +K + 
Sbjct: 281 NGHDHRAIEL-----LLQMKYSGLVPNVFTLSSILKACSG-AGAFDLGRQIHGFMIKANA 334

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               + G  LV  Y++    D+A+KVFD +  RD++   A+I G +   R  ++LS+F +
Sbjct: 335 DSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYE 394

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           +R   +G     ++  L++ A L A    R +H  AV  G   +  V  GLID Y K   
Sbjct: 395 LRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSC 454

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +SDA RVF+E  S  + IA  +M+   +Q       ++LF  +  +G  PD +   ++L 
Sbjct: 455 LSDANRVFEE-CSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLN 513

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A C +  A E  K +    ++ +          L+    + G +EDAE    ++P E   
Sbjct: 514 A-CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGV 571

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
             W A++   A HG    A ++  R++D  INP     ++ + +VL        V E ++
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINP----NHITMTSVLCACNHAGLVDEAKR 627



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 170/371 (45%), Gaps = 9/371 (2%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           +HA  LKS     S  N+LI+ YSK      + R F+ IP P  VSW++L++A+SN+ L 
Sbjct: 26  LHASLLKSGSL-ASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLP 84

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
            +   +           N+  L  + K           G  +H++++        F  +A
Sbjct: 85  RSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR----LGAQVHAMAMATGFGSDVFVANA 140

Query: 141 LVHFYSRFRSPDNAKKVFDEI-RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           LV  Y  F   D+A++VF+E   ER+ V +  ++  + +N +  D++ VF +M  S +  
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T +  S  + A      +E  R +H   V  G D++V     L+D Y K G V  A  +F
Sbjct: 201 TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIF 260

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +   + ++WNA+++G    G     +EL   ++  G  P+ ++  ++L A   AG A
Sbjct: 261 -EKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG-A 318

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +  + I    ++   +        L+    +   L+DA ++   M F  D  +  AL+S
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNALIS 377

Query: 380 FSAIHGKADMA 390
             +  G+ D A
Sbjct: 378 GCSHGGRHDEA 388



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 155/347 (44%), Gaps = 13/347 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSP 78
           VHA A+ +   +D  + N L+  Y     +  + R+FN   S  N VSW  L+SA+  + 
Sbjct: 122 VHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKND 181

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               ++ +F  M+        P +   + +   C   S     G  +H++ +++      
Sbjct: 182 QCGDAIQVFGEMVWS---GIQPTEFGFSCVVNACTG-SRNIEAGRQVHAMVVRMGYDKDV 237

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  +ALV  Y +    D A  +F+++ + DVV + A+I G   N     ++ +   M+ S
Sbjct: 238 FTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYS 297

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +   ++ +S  L+A +   A +  R IHG  + +  D +  +G GL+D Y K   + DA
Sbjct: 298 GLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R+VFD      + I  NA+++G +  G     L LF+ L   G   +  +  AVL +   
Sbjct: 358 RKVFDWMFH-RDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS--T 414

Query: 316 AGL-AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           A L A  + + +  + V+            LI +  +   L DA R+
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRV 461


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 189/564 (33%), Positives = 313/564 (55%), Gaps = 23/564 (4%)

Query: 19  RIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+V AR +  +  + D   +N +I+ Y+++  L  + RLF   P  ++ +WTA++S +  
Sbjct: 219 RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQ 278

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA--FLFGLSLHSLSLKLSL 131
           + +   +  +F  M    ++S+      + + +  C  +  A      +   ++S     
Sbjct: 279 NGMLDEARRVFDGMPEKNSVSW----NAIIAGYVQCKRMDQARELFEAMPCQNVS----- 329

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                  + ++  Y++      A+  FD + +RD + + A+I G+AQ+    ++L +F +
Sbjct: 330 -----SWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVE 384

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+           +  L   AE+AA+E  + +HG  V +GL+    VG  L+  Y K G 
Sbjct: 385 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 444

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA  VF E +     ++WN M+AGYA+ G     L LF  ++  G  PD+ + + VL+
Sbjct: 445 IDDAYIVF-EGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLS 503

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  +  ++   M   Y +    +HYTC+I  +GRAGRL+DA+ +   MPFEPDA
Sbjct: 504 ACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDA 563

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           A W ALL  S IHG  ++  K  K + ++ P +   YV+++N+ +  GRW +V  +R  M
Sbjct: 564 ATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRM 623

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           +DR V+K  G SW+EV+ K+H F  GD +H   + IYT L EL  + ++ GYV     +L
Sbjct: 624 RDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVL 683

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H+V + EK   L YHSEKLA+AFG+++  P G+ +R++KNLR+C DCH + K+IS++V R
Sbjct: 684 HDVEEEEKVHMLKYHSEKLAVAFGILA-IPAGRPIRVIKNLRVCEDCHNAMKHISKIVGR 742

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
            I++RD +R+H F  G C+CGD W
Sbjct: 743 LIILRDSHRFHHFNGGQCSCGDYW 766



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 183/420 (43%), Gaps = 78/420 (18%)

Query: 6   NQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV 65
           N++P  +N    P+   + A   + AD   +N  ITN+ ++     +LRLFN +P  + +
Sbjct: 28  NRKPSTRN---QPKTTSSLA---TDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSI 81

Query: 66  SWTALIS---AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
           SW A+IS   ++    L+  +F  M   PT       R L S                  
Sbjct: 82  SWNAMISGCLSNDKFYLARQLFEKM---PT-------RDLVSW----------------- 114

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
                           + ++    R+R+   A+ +FD++ ERDVV + AM+ G+AQN  +
Sbjct: 115 ----------------NVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
            ++  +F +M   +  S     +G L A  +   +E  R +      S  D  +I    +
Sbjct: 159 KEAKEIFDEMPCKNSISW----NGMLAAYVQNGRIEDARRL----FESKADWELISWNCM 210

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           + GY K   + DAR +FD  +   + ++WN M++GYAQ G+      LF    +R    D
Sbjct: 211 MGGYVKRNRLVDARGIFDR-MPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----D 265

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
            +++ A+++     G+  E+ +  + M      E     +  +I+   +  R++ A  + 
Sbjct: 266 VFTWTAMVSGYVQNGMLDEARRVFDGMP-----EKNSVSWNAIIAGYVQCKRMDQARELF 320

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS---AYVIVANVLSGVG 419
            AMP + + + W  +++  A +G  D+A    +   D  P  DS   A +I     SG G
Sbjct: 321 EAMPCQ-NVSSWNTMITGYAQNG--DIAQ--ARNFFDRMPQRDSISWAAIIAGYAQSGYG 375


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 199/557 (35%), Positives = 300/557 (53%), Gaps = 33/557 (5%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH  ALKS  + D  +   L+  Y+KS  +  +   F  IP  +++ W+ +I+ ++ S  
Sbjct: 262 VHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQ 321

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           S        +      LPNQ T AS+ + CA++      G  +H   +K+ LH   F  +
Sbjct: 322 SKEAVEMFFQMRQALVLPNQFTFASVLQACATME-GLNLGNQIHCHVIKIGLHSDVFVSN 380

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           AL+  Y++    +N+  +F E   R DV  +  +IVG  Q      +L +F +M    V 
Sbjct: 381 ALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQ 440

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           +T    S ALRA A LAA+E    IH   V +  D++++V   LID Y K G + DAR V
Sbjct: 441 ATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLV 500

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD  ++  + ++WNAM++GY+  G                             A  NAGL
Sbjct: 501 FDL-MNKQDEVSWNAMISGYSMHG----------------------------LACANAGL 531

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             + + +   M   + +EP +EHYTC++  +GR G L+ A ++   +PF+P   VWRALL
Sbjct: 532 LDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALL 591

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               IH   ++     + ++++ P D + +V+++N+ +   RWD VA VRK MK + V+K
Sbjct: 592 GACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKK 651

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
           E G SWIE +G VH F  GD  H     I   L  L  + ++ GY+P ++ +L +V D E
Sbjct: 652 EPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEE 711

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K   LW HSE+LAL+FG++   P G  +RI+KNLRIC DCH + K IS+VV+REIVVRD+
Sbjct: 712 KERLLWVHSERLALSFGIIR-TPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDI 770

Query: 559 NRYHRFLNGSCTCGDLW 575
           NR+H F  G C+CGD W
Sbjct: 771 NRFHHFQEGLCSCGDYW 787



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 181/372 (48%), Gaps = 12/372 (3%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   K   +++  +   LI  YS    +  +  +F+ I   ++VSWT +++  + +  
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F  M     + F PN  T AS+FK C  L  AF  G S+H  +LK       +
Sbjct: 221 FKEALKLFSQM---RMVGFKPNNFTFASVFKACLGLE-AFDVGKSVHGCALKSRYELDLY 276

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G AL+  Y++    D+A+  F+EI ++DV+ +  MI  +AQ+ +  +++ +F  MR + 
Sbjct: 277 VGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQAL 336

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    +  +  L+A A +  +     IH H +  GL  +V V   L+D Y K G + ++ 
Sbjct: 337 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSM 396

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCN 315
            +F E+    +   WN ++ G+ Q GD    L LF ++LE R  A  E ++ + L A C 
Sbjct: 397 XLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQAT-EVTYSSALRA-CA 454

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           +  A E    I  + V+   +  +     LI    + G ++DA R+   +  + D   W 
Sbjct: 455 SLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDLMNKQDEVSWN 513

Query: 376 ALLSFSAIHGKA 387
           A++S  ++HG A
Sbjct: 514 AMISGYSMHGLA 525



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 161/359 (44%), Gaps = 4/359 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LK     D   +N L+  Y KS+ L  + +LF+ +P  N +S+  LI  ++ S  
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            L      +R        N     ++ K   S+    L G  +H+   KL      F G+
Sbjct: 120 FLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGEL-GWGIHACIFKLGHESNAFVGT 178

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  YS     D A++VFD I  +D+V +  M+  FA+N    ++L +F+ MR      
Sbjct: 179 ALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKP 238

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             +  +   +A   L A +  + +HG A+ S  + ++ VG  L+D Y K+G + DAR  F
Sbjct: 239 NNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAF 298

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +E +   + I W+ M+A YAQ       +E+F  +      P++++F +VL A C     
Sbjct: 299 EE-IPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQA-CATMEG 356

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
                 I    ++  L   +     L+    + GR+E++  +    P   D   W  ++
Sbjct: 357 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVI 415


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 314/560 (56%), Gaps = 11/560 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA----HS 75
           VHA  + S     R +   L+     +  +SY+ ++F  +P+P+   +T+LI +    H+
Sbjct: 31  VHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHN 90

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            S  SL  +  M+     +  P+  T  S+ K+CA L  A   G  +H   L        
Sbjct: 91  FSVYSLYFYTRMV---LSNVAPSNYTFTSVIKSCADLV-ALRHGRIIHGHVLVNGFGSDV 146

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           +  +AL+ FY +     NA+KVFD++R+R VV + +MI G+ QN    +++ +F  M+  
Sbjct: 147 YVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEI 206

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V          L A A L A      +H +AV +GLD NV++GT LI+ Y + G VS A
Sbjct: 207 GVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKA 266

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R VFD ++   N +AW AM++GY   G  S  +ELFH +   G  P+  +F+AVL+A  +
Sbjct: 267 REVFD-SMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAH 325

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  E  +  E M+  Y+L P +EH+ CL+  +GRAG L++A      +  EP  A+W 
Sbjct: 326 AGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWT 385

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           A+L    +H    + +++ +  +   P + + YVI++N+ +  GR D+V  VR  M  + 
Sbjct: 386 AMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKC 445

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           ++K+ G S I++  K ++F  GD+ H  T +IY  L +LM +C   GYV V D ++H + 
Sbjct: 446 LKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELE 505

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + E+  AL YHSEKLA+AFGL+    RG  +RIVKNLR+C DCH + KYIS +  REI+V
Sbjct: 506 EEEREYALGYHSEKLAIAFGLLK-TSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIV 564

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD  R+H F NGSC+C D W
Sbjct: 565 RDKLRFHHFKNGSCSCLDYW 584


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 204/565 (36%), Positives = 306/565 (54%), Gaps = 12/565 (2%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R++HA AL+    DR I   N L+  Y++      +  LF  IP  N VSW  +I+  S 
Sbjct: 343 RMIHACALEKG-LDRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQ 400

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS---LSHAFLFGLSLHSLSLKLSLHD 133
                       R       P + T  +L +  AS    + A   G  LHS  +      
Sbjct: 401 KGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYAS 460

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDE--IRER-DVVCYGAMIVGFAQNSRLVDSLSVFA 190
           +P  G+A+V  Y+   + D A   F    + +R DVV + A+I   +Q+     +L  F 
Sbjct: 461 EPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFR 520

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            M    V          L A A  AA+ +  ++H H   SG++ NV V T L   YG+ G
Sbjct: 521 RMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCG 580

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  AR +F++     + + +NAM+A Y+Q G     L+LF  ++  G  PDE SF++VL
Sbjct: 581 SLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVL 640

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  + GLA E  +    M+  Y + P  +HY C +  +GRAG L DAE +   M  +P 
Sbjct: 641 SACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPT 700

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             VW+ LL     +   D        + +++P D+SAYV+++N+L+G G+WDE AEVR  
Sbjct: 701 VLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTE 760

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           M+ R +RK+ G+SWIE+K +VH F+AGDR H R+E+IY +L  L  E   +GYVP    +
Sbjct: 761 MESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLV 820

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L  V + EK   L  HSE+LA+A G++S +    T+R++KNLR+C DCH + K+IS++V 
Sbjct: 821 LRKVDEAEKERLLCQHSERLAIALGVMSSST--DTVRVMKNLRVCEDCHNATKFISKIVN 878

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           +EIVVRD +R+H F++GSC+CGD W
Sbjct: 879 KEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 191/391 (48%), Gaps = 22/391 (5%)

Query: 16  TDPRIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           +  R +HA  ++S    +S+  NL+ + Y     ++ ++ LF  +   ++VSW A I+A+
Sbjct: 145 SQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERMER-DLVSWNAAIAAN 203

Query: 75  SNSPLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + S   L++ L + +   L  + P + TL      CA +  A     ++HS+  +  L  
Sbjct: 204 AQSG-DLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQA----RAIHSIVRESGLEQ 258

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                +AL   Y+R    D AK+VFD   ERDVV + AM+  +AQ+  + ++  +FA M 
Sbjct: 259 TLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARML 318

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              +  +   +   + A+   +++   R+IH  A+  GLDR++++G  L+D Y + G   
Sbjct: 319 HEGIPPSKVTL---VNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPE 375

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +AR +F+      N+++WN M+AG +Q+G     LELF  +++ G AP   ++L +L A+
Sbjct: 376 EARHLFEGIPG--NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAV 433

Query: 314 CN----AGLAGESEKWIERM-KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM--AMP 366
            +    A    E  K   R+    Y  EP +   T ++      G +++A       AM 
Sbjct: 434 ASNPEEARAMAEGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAME 491

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
              D   W A++S  + HG    A    +R+
Sbjct: 492 DRHDVVSWNAIISSLSQHGHGKRALGFFRRM 522



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 168/386 (43%), Gaps = 21/386 (5%)

Query: 16  TDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           +  R +HAR + S   +  + N+L+  Y K   L     +F+ +   +  SWT +I+A++
Sbjct: 46  SQGRRIHAR-IVSLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYT 104

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               +        R        +  T  ++ K CA L      G S+H+  ++  L  K 
Sbjct: 105 EHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGD-LSQGRSIHAWIVESGLEGKS 163

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              + L+H Y       +A  +F+ + ERD+V + A I   AQ+  L  +L +F  M+  
Sbjct: 164 VLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLE 222

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V      +   L   A++    Q R IH     SGL++ ++V T L   Y + G +  A
Sbjct: 223 GVRPARITLVITLSVCAKI---RQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQA 279

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           + VFD   +  + ++WNAM+  YAQ G  S    LF  +   G  P + + +   T    
Sbjct: 280 KEVFD-RAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNAST---- 334

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM----GRAGRLEDAERIAMAMPFEPDA 371
               G S     RM     LE GL+    L +A+     R G  E+A  +   +P   +A
Sbjct: 335 ----GCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP--GNA 388

Query: 372 AVWRALLSFSAIHGKADMASKMGKRL 397
             W  +++ S+  G+   A ++ +R+
Sbjct: 389 VSWNTMIAGSSQKGQMKRALELFQRM 414



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 124/280 (44%), Gaps = 9/280 (3%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H+  + L L ++   G+ L+  Y +  S  + ++VF  +  RD   +  +I  + +
Sbjct: 48  GRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTE 105

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           + +   ++ +F  M+   V          L+A A L  + Q R IH   V SGL+   ++
Sbjct: 106 HGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVL 165

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
              L+  YG  G V+ A  +F+     L  ++WNA +A  AQ GD    LELF  +++ G
Sbjct: 166 ANLLLHIYGSCGCVASAMLLFERMERDL--VSWNAAIAANAQSGDLDMALELFQRMQLEG 223

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
             P   + +  L+       A    + I  +     LE  L   T L SA  R G L+ A
Sbjct: 224 VRPARITLVITLSVCAKIRQA----RAIHSIVRESGLEQTLVVSTALASAYARLGHLDQA 279

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           + +      E D   W A+L   A HG    A+ +  R++
Sbjct: 280 KEV-FDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARML 318



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 21/215 (9%)

Query: 191 DMRSSDVGSTMYC-VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
           D+ SS  G+T    +   LRAA +   + Q R IH   V  GL+    +G  L+  Y K 
Sbjct: 18  DLPSSSSGATRPAHLVRLLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKC 75

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
             + D   VF   L V +  +W  ++  Y + G     + +FH ++  G   D  +FLAV
Sbjct: 76  ESLGDVEEVFS-RLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAV 134

Query: 310 LTALCNAGLAGESEK---WIERMKVRYKLEPGLEHYTCLISAM----GRAGRLEDAERIA 362
           L A    G   +      WI        +E GLE  + L + +    G  G +  A  + 
Sbjct: 135 LKACARLGDLSQGRSIHAWI--------VESGLEGKSVLANLLLHIYGSCGCVASA--ML 184

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           +    E D   W A ++ +A  G  DMA ++ +R+
Sbjct: 185 LFERMERDLVSWNAAIAANAQSGDLDMALELFQRM 219


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 314/568 (55%), Gaps = 14/568 (2%)

Query: 18  PRI-----VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           PR+     VHA  + +S    RS+   LIT    +  ++Y+  LF  +P P+   + ++I
Sbjct: 20  PRVKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVI 79

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
            + S   L L+      R  + +  P+  T  S+ K+CA LS A   G  +H  ++    
Sbjct: 80  KSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS-ALKIGKGVHCHAVVSGF 138

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               +  +ALV FYS+    + A++VFD + E+ VV + +++ GF QN    D++ VF  
Sbjct: 139 GLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQ 198

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR S            L A A+  A+     +H + V  GLD NV +GT LI+ Y + G 
Sbjct: 199 MRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGD 258

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVL 310
           V  AR VFD+ +   N  AW AM++ Y   G     ++LF+ +E   G  P+  +F+AVL
Sbjct: 259 VGKAREVFDK-MKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVL 317

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  +AGL  +     +RM   Y+L PG+EH+ C++  +GRAG L++A R    +    +
Sbjct: 318 SACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGN 377

Query: 371 A---AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           A   A+W A+L    +H   D+  ++ KRLI + P +   +V+++N+ +  G+ DEV+ +
Sbjct: 378 ATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHI 437

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           R  M    +RK+ G S IEV+ K ++F  GD  H+ T +IY  L  L+  C+ +GY PV 
Sbjct: 438 RDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVS 497

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
           +E++H V + EK  AL YHSEKLA+AFGL+       T  +VKNLRIC DCH +FKYIS 
Sbjct: 498 EEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDSAIT--VVKNLRICEDCHSAFKYISI 555

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           V  R+I+VRD  R+H F NGSC+C D W
Sbjct: 556 VSNRQIIVRDKLRFHHFQNGSCSCLDYW 583


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 186/496 (37%), Positives = 286/496 (57%), Gaps = 6/496 (1%)

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           S+ I+  M ++      P+  T  ++ K+ A L    L G ++H   +++      +  +
Sbjct: 126 SVFIYTQMWKN---GIFPDSSTFPTVLKSVAQLCRQEL-GKAIHCCIIQMGFESNVYVST 181

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV+ Y    S  +A++VFDEI +R++V + A+I G+  N      + VF +M+ +    
Sbjct: 182 ALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKP 241

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               + G L A A L A+ Q R I  +   + L  NV VGT LID Y K G+V +A ++F
Sbjct: 242 VEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIF 301

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            + + V N   WN +++GYA  G   + L+ F  + M  F PDE +FL VL A C+ GL 
Sbjct: 302 -KAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLV 360

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E   +   MK  + L P +EHY C++  +GRAG L++A+++  AM  +PD  +WR LL 
Sbjct: 361 NEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLG 420

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IHG   +     K+L+++ P +   YV++AN+ +   RWD+V EVR++M  RRVRK 
Sbjct: 421 ACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKV 480

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S IE+   V+ F+  + +    E++Y  LA++ ++ +  GYV       +++ + EK
Sbjct: 481 PGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEK 540

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             +L YHSEKLALAFGL+  +P G TLRIVKNLRIC+DCH  FK +S+V  R+I VRD N
Sbjct: 541 EHSLMYHSEKLALAFGLLK-SPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRN 599

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F+ G+C+C D W
Sbjct: 600 RFHHFVGGACSCKDYW 615



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 3/228 (1%)

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           +MI  +  +++ + S+ ++  M  + +          L++ A+L   E  + IH   +  
Sbjct: 112 SMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQM 171

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           G + NV V T L++ YG    VSDAR+VFDE +   N ++WNA++ GY        V+++
Sbjct: 172 GFESNVYVSTALVNMYGTCSSVSDARQVFDE-IPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           F  +++ G  P E + + VL A  + G   +  +WI+      +L   +   T LI    
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQG-RWIDDYIDHNRLRLNVFVGTALIDMYA 289

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           + G +++AE+I  AM  + +   W  L+S  A++G+ + A +   R+I
Sbjct: 290 KCGVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNGRGESALQAFSRMI 336



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 114/276 (41%), Gaps = 3/276 (1%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           L+  Y   + +S + ++F+ IP  NIVSW ALI+ ++++ +   +             P 
Sbjct: 183 LVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPV 242

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
           + T+  +   CA L  A   G  +        L    F G+AL+  Y++    D A+K+F
Sbjct: 243 EVTMVGVLLACAHLG-ALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIF 301

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
             +R ++V  +  +I G+A N R   +L  F+ M             G L A      + 
Sbjct: 302 KAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVN 361

Query: 219 QCRVIHGHAVVS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
           + R          GL   +     ++D  G+AG + +A+++        + I W  ++  
Sbjct: 362 EGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGA 421

Query: 278 YAQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
               G+ Q     +  LLE+     + Y  LA L A
Sbjct: 422 CRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYA 457


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 189/564 (33%), Positives = 313/564 (55%), Gaps = 23/564 (4%)

Query: 19  RIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+V AR +  +  + D   +N +I+ Y+++  L  + RLF   P  ++ +WTA++S +  
Sbjct: 138 RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQ 197

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA--FLFGLSLHSLSLKLSL 131
           + +   +  +F  M    ++S+      + + +  C  +  A      +   ++S     
Sbjct: 198 NGMLDEARRVFDGMPEKNSVSW----NAIIAGYVQCKRMDQARELFEAMPCQNVS----- 248

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                  + ++  Y++      A+  FD + +RD + + A+I G+AQ+    ++L +F +
Sbjct: 249 -----SWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVE 303

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+           +  L   AE+AA+E  + +HG  V +GL+    VG  L+  Y K G 
Sbjct: 304 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 363

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA  VF E +     ++WN M+AGYA+ G     L LF  ++  G  PD+ + + VL+
Sbjct: 364 IDDAYIVF-EGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLS 422

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  +  ++   M   Y +    +HYTC+I  +GRAGRL+DA+ +   MPFEPDA
Sbjct: 423 ACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDA 482

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           A W ALL  S IHG  ++  K  K + ++ P +   YV+++N+ +  GRW +V  +R  M
Sbjct: 483 ATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRM 542

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           +DR V+K  G SW+EV+ K+H F  GD +H   + IYT L EL  + ++ GYV     +L
Sbjct: 543 RDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVL 602

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H+V + EK   L YHSEKLA+AFG+++  P G+ +R++KNLR+C DCH + K+IS++V R
Sbjct: 603 HDVEEEEKVHMLKYHSEKLAVAFGILA-IPAGRPIRVIKNLRVCEDCHNAMKHISKIVGR 661

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
            I++RD +R+H F  G C+CGD W
Sbjct: 662 LIILRDSHRFHHFNGGQCSCGDYW 685



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 132/276 (47%), Gaps = 26/276 (9%)

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           R+R+   A+ +FD++ ERDVV + AM+ G+AQN  + ++  +F +M   +  S     +G
Sbjct: 42  RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISW----NG 97

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A  +   +E  R +      S  D  +I    ++ GY K   + DAR +FD  +   
Sbjct: 98  MLAAYVQNGRIEDARRL----FESKADWELISWNCMMGGYVKRNRLVDARGIFDR-MPER 152

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + ++WN M++GYAQ G+      LF    +R    D +++ A+++     G+  E+ +  
Sbjct: 153 DEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQNGMLDEARRVF 208

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           + M  +  +      +  +I+   +  R++ A  +  AMP + + + W  +++  A +G 
Sbjct: 209 DGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITGYAQNG- 261

Query: 387 ADMASKMGKRLIDINPYDDS---AYVIVANVLSGVG 419
            D+A    +   D  P  DS   A +I     SG G
Sbjct: 262 -DIAQ--ARNFFDRMPQRDSISWAAIIAGYAQSGYG 294



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 112/250 (44%), Gaps = 33/250 (13%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +A++  Y++      AK++FDE+  ++ + +  M+  + QN R+ D+  +F      ++ 
Sbjct: 65  NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELI 124

Query: 199 STMYCVSGALR------AAAELAAMEQCRVIHGHAVVSGLDRN----------------- 235
           S    + G ++      A      M +   +  + ++SG  +N                 
Sbjct: 125 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 184

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           V   T ++ GY + G++ +ARRVFD  +   NS++WNA++AGY Q        ELF  + 
Sbjct: 185 VFTWTAMVSGYVQNGMLDEARRVFD-GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 243

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
            +  +    S+  ++T     G   ++  + +RM  R  +      +  +I+   ++G  
Sbjct: 244 CQNVS----SWNTMITGYAQNGDIAQARNFFDRMPQRDSIS-----WAAIIAGYAQSGYG 294

Query: 356 EDAERIAMAM 365
           E+A  + + M
Sbjct: 295 EEALHLFVEM 304


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 190/558 (34%), Positives = 311/558 (55%), Gaps = 11/558 (1%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR L    + R++  +N LI    K+  L  +  LF+ +P+ N+ +W A+++  +N  L 
Sbjct: 96  ARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLD 155

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             SL  FL+M R       P++  L S+F+ CA L    + G  +H+  ++  +      
Sbjct: 156 EDSLQFFLAMRRE---GMHPDEFGLGSVFRCCAGLLDV-VSGRQVHAYVVRSGMDSDMCV 211

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G++L H Y R       + V   +    +V +   I G  QN     +L  F+ MR  +V
Sbjct: 212 GNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEV 271

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
              +     A+   ++LAA+ Q + +H   + +G+D+ V V T L+  Y + G + D+ R
Sbjct: 272 APDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSER 331

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           V+D     L+    +AM++     G     +ELF  +   G  P+E +FLA+L A  ++G
Sbjct: 332 VYD-GYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSG 390

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E  ++ E M   Y  +P ++HY C++  +GR+G L++AE + ++MP   D  +W+ L
Sbjct: 391 LKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTL 450

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           LS        DMA ++ +R+I+ +P D + YV+++N+ +   RW +V EVRK+M+++ +R
Sbjct: 451 LSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIR 510

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           KE G SW+E KG+VH F  GD+ H R  +I   L E+M +  + GY P    + H++ D 
Sbjct: 511 KEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDE 570

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           EK  +L +HSEKLA+AF  ++  P G  +R++KNLR+C DCH + K IS+V  REIVVRD
Sbjct: 571 EKEVSLTHHSEKLAIAFAFLN-LPEGVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRD 629

Query: 558 VNRYHRFLNGSCTCGDLW 575
           V+R+H F +G C+CGD W
Sbjct: 630 VSRFHHFRDGRCSCGDYW 647



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 142/345 (41%), Gaps = 41/345 (11%)

Query: 88  LRHPTLSFLPNQRTLAS-LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           L HP    L +  +L S +F+ C     A      LH+ +         F  + L+  Y+
Sbjct: 33  LHHPFRGVLWSDASLFSHIFRAC----RAIPLLRQLHAFAATSGAAADRFTTNNLLLAYA 88

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL------------------------ 182
                  A+ +F+ I +R+V+ +  +I G  +N  L                        
Sbjct: 89  DLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAG 148

Query: 183 -------VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
                   DSL  F  MR   +    + +    R  A L  +   R +H + V SG+D +
Sbjct: 149 LTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSD 208

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           + VG  L   Y + G +++   V    L  L  +++N  +AG  Q GD    LE F ++ 
Sbjct: 209 MCVGNSLAHMYMRCGCLAEGEAVL-RALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMR 267

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESE-KWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
               APD  +F++ ++  C + LA  ++ + +    ++  ++  +   T L+    R G 
Sbjct: 268 GVEVAPDVVTFVSAIS--CCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGC 325

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           L D+ER+        D  +  A++S    HG+   A ++ K++++
Sbjct: 326 LGDSERVYDGY-CGLDLFLLSAMISACGFHGQGHKAVELFKQMMN 369


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 188/555 (33%), Positives = 308/555 (55%), Gaps = 3/555 (0%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           +H  + +       + N  I  Y+K   L+ + ++F+ I    + SW ALI  H+ +   
Sbjct: 373 LHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDP 432

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
                 + +       P+  T++SL   CA L  +  +G  +H   L+  L    F G++
Sbjct: 433 RKALHLLFQMTYSGQQPDWFTISSLLLACAHLK-SLQYGKEIHGYVLRNGLETDFFVGTS 491

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           L+  Y       +A+ +FD ++++++V + AMI G++QN    +SL++F    S  + S 
Sbjct: 492 LLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSH 551

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
              +     A ++L+A+   +  HG+ + +    +  VG  +ID Y K+G + ++R+VFD
Sbjct: 552 EIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFD 611

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
             L   N  +WNA++  +   G     +EL+  ++  G  PD ++++ +L A  +AGL  
Sbjct: 612 -GLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVE 670

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           E  K+ + M+    +EP LEHY CLI  + RAGRL+DA R+   MP E D  +W +LL  
Sbjct: 671 EGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRS 730

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
               G  ++  K+ K+L+++ P     YV+++N+ +G+G+WD V  VR++MK+  ++K+ 
Sbjct: 731 CRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDA 790

Query: 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKR 500
           G SWIEV G+V+ F+ GD +  ++ +I      L E    +GY P    +LH VG+ EK 
Sbjct: 791 GCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKI 850

Query: 501 EALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNR 560
           + L  HSEKLA++FGL+    +G TLRI KNLRIC DCH + K IS+ VEREIVVRD  R
Sbjct: 851 DILRGHSEKLAISFGLLK-TTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKR 909

Query: 561 YHRFLNGSCTCGDLW 575
           +H F +G C+C D W
Sbjct: 910 FHHFRDGLCSCCDYW 924



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 177/387 (45%), Gaps = 20/387 (5%)

Query: 12  QNTSTDPRIVHARALKSSQADRSIYNN-------LITNYSKSNLLSYSLRLFNHIPSPNI 64
           Q       I   R L    +D + Y N       LI  Y+       S  +F+++ + N+
Sbjct: 51  QACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNL 110

Query: 65  VSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
           + W AL+S ++ + L    + +F+ ++      F P+  T  S+ K C  +    L G  
Sbjct: 111 IQWNALVSGYTRNGLYGDVVKVFMDLVSDT--DFQPDNFTFPSVIKACGGILDVRL-GEV 167

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H + +K+ L    F G+ALV  Y +  + D A KVFD + E ++V + +MI  F++N  
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGF 227

Query: 182 LVDSLSVFADMRSSD-VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
             DS  +  +M   + +   +  V   L   A    ++    IHG AV  GL   V+V  
Sbjct: 228 SRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNN 287

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-- 298
            ++  Y K G +++A+  F +N +  N ++WN M++ ++ +GD +    L   ++++G  
Sbjct: 288 AMVYMYSKCGYLNEAQMSFVKN-NNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEE 346

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
              +E + L VL A C   L   S K +     R+  +  +E     I A  + G L  A
Sbjct: 347 MKANEVTILNVLPA-CLDKLQLRSLKELHGYSFRHCFQH-VELSNAFILAYAKCGALNSA 404

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHG 385
           E++   +  +   + W AL+   A +G
Sbjct: 405 EKVFHGIG-DKTVSSWNALIGGHAQNG 430


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 195/544 (35%), Positives = 308/544 (56%), Gaps = 14/544 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           + N LI  Y K NLL+ + +LF+ +P  N++SWT +ISA+S   +   +L + + MLR  
Sbjct: 98  LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD- 156

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
             +  PN  T +S+ ++C  +S   +    LH   +K  L    F  SAL+  +++   P
Sbjct: 157 --NVRPNVYTYSSVLRSCNGMSDVRM----LHCGIIKEGLESDVFVRSALIDVFAKLGEP 210

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           ++A  VFDE+   D + + ++I GFAQNSR   +L +F  M+ +   +    ++  LRA 
Sbjct: 211 EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC 270

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
             LA +E     H H V    D+++I+   L+D Y K G + DA RVF++ +   + I W
Sbjct: 271 TGLALLELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDALRVFNQ-MKERDVITW 327

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           + M++G AQ G     L+LF  ++  G  P+  + + VL A  +AGL  +   +   MK 
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKK 387

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y ++P  EHY C+I  +G+AG+L+DA ++   M  EPDA  WR LL    +     +A 
Sbjct: 388 LYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE 447

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              K++I ++P D   Y +++N+ +   +WD V E+R  M+DR ++KE G SWIEV  ++
Sbjct: 448 YAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F+ GD  H +  ++  KL +L+     +GYVP  + +L ++   +  ++L +HSEKLA
Sbjct: 508 HAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLA 567

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           LAFGL++  P  K +RI KNLRIC DCH   K  S++  R IV+R   RYH F +G C+C
Sbjct: 568 LAFGLMT-LPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSC 626

Query: 572 GDLW 575
           GD W
Sbjct: 627 GDYW 630



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 36/199 (18%)

Query: 22  HARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSL 81
           H   +K  Q D  + N L+  Y K   L  +LR+FN +   ++++W+ +IS  + +  S 
Sbjct: 283 HVHIVKYDQ-DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQ 341

Query: 82  NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSAL 141
                  R  +    PN  T+  +   C   SHA L             L D        
Sbjct: 342 EALKLFERMKSSGTKPNYITIVGVLFAC---SHAGL-------------LEDG------- 378

Query: 142 VHFYSRFRSPDNAKKVF--DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
              +  FRS    KK++  D +RE     YG MI    +  +L D++ +  +M       
Sbjct: 379 ---WYYFRS---MKKLYGIDPVREH----YGCMIDLLGKAGKLDDAVKLLNEMECEPDAV 428

Query: 200 TMYCVSGALRAAAELAAME 218
           T   + GA R    +   E
Sbjct: 429 TWRTLLGACRVQRNMVLAE 447


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 203/565 (35%), Positives = 305/565 (53%), Gaps = 12/565 (2%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R++H  AL+    DR I   N L+  Y++      +  LF  IP  N VSW  +I+  S 
Sbjct: 343 RMIHGCALEKG-LDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQ 400

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS---LSHAFLFGLSLHSLSLKLSLHD 133
                       R       P + T  +L +  AS    + A   G  LHS  +      
Sbjct: 401 KGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYAS 460

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDE--IRER-DVVCYGAMIVGFAQNSRLVDSLSVFA 190
           +P  G+A+V  Y+   + D A   F    + +R DVV + A+I   +Q+     +L  F 
Sbjct: 461 EPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFR 520

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            M    V          L A A  AA+ +  ++H H   SG++ N+ V T L   YG+ G
Sbjct: 521 RMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCG 580

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  AR +F++     + + +NAM+A Y+Q G     L+LF  ++  G  PDE SF++VL
Sbjct: 581 SLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVL 640

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  + GLA E  +    M+  Y + P  +HY C +  +GRAG L DAE +   M  +P 
Sbjct: 641 SACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPT 700

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             VW+ LL     +   D        + +++P D+SAYV+++N+L+G G+WDE AEVR  
Sbjct: 701 VLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTE 760

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           M+ R +RKE G+SWIE+K +VH F+AGDR H R+E+IY +L  L  E   +GYVP    +
Sbjct: 761 MESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLV 820

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L  V + EK   L  HSE+LA+A G++S +    T+R++KNLR+C DCH + K+IS++V 
Sbjct: 821 LRKVDEAEKERLLCQHSERLAIALGVMSSST--DTVRVMKNLRVCEDCHNATKFISKIVN 878

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           +EIVVRD +R+H F++GSC+CGD W
Sbjct: 879 KEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 189/391 (48%), Gaps = 22/391 (5%)

Query: 16  TDPRIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           +  R +HA  ++S    +S+  NL+ + Y     ++ ++ LF  +   ++VSW A I+A+
Sbjct: 145 SQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKMER-DLVSWNAAIAAN 203

Query: 75  SNSPLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + S   L I L + +   L  + P + TL      CA++  A     ++H +  +  L  
Sbjct: 204 AQSG-DLGIALELFQRMQLEGVRPARITLVIALTVCATIRQA----QAIHFIVRESGLEQ 258

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                +AL   Y+R      AK+VFD   ERDVV + AM+  +AQ+  + ++  +FA M 
Sbjct: 259 TLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARML 318

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              +  +   +   + A+   +++   R+IHG A+  GLDR++++G  L+D Y + G   
Sbjct: 319 HEGISPSKVTL---VNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPE 375

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +AR +F       N+++WN M+AG +Q+G     +ELF  +++ G AP   ++L +L A+
Sbjct: 376 EARHLFKR--IPCNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAV 433

Query: 314 CN----AGLAGESEKWIERM-KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM--AMP 366
            +    A    E  K   R+    Y  EP +   T ++      G +++A       AM 
Sbjct: 434 ASNPEEARAMAEGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAME 491

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
              D   W A++S  + HG    A    +R+
Sbjct: 492 DRHDVVSWNAIISSLSQHGHGKRALGFFRRM 522



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 177/393 (45%), Gaps = 35/393 (8%)

Query: 16  TDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA-- 73
           +  R +HAR + S   +  + N+L+  Y K   L     +F+ +   +  SWT +I+A  
Sbjct: 46  SQGRRIHAR-IVSLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYT 104

Query: 74  -HSNSPLSLNIFLSM----LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
            H  +  ++ +F  M    +R   ++FL       ++ K CA L      G S+H+  ++
Sbjct: 105 EHGQAKRAIGMFHRMQQEGVRCDAVTFL-------AVLKACARLGD-LSQGRSIHAWIVE 156

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
             L  K    + L+H Y       +A  +F+++ ERD+V + A I   AQ+  L  +L +
Sbjct: 157 SGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALEL 215

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           F  M+   V      +  AL      A + Q + IH     SGL++ ++V T L   Y +
Sbjct: 216 FQRMQLEGVRPARITLVIALTVC---ATIRQAQAIHFIVRESGLEQTLVVSTALASAYAR 272

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G +  A+ VFD   +  + ++WNAM+  YAQ G  S    LF  +   G +P + + + 
Sbjct: 273 LGHLYQAKEVFD-RAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVN 331

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM----GRAGRLEDAERIAMA 364
             T        G S     RM     LE GL+    L +A+     R G  E+A  +   
Sbjct: 332 AST--------GCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKR 383

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           +P   +A  W  +++ S+  G+   A ++ +R+
Sbjct: 384 IPC--NAVSWNTMIAGSSQKGQMKRAVELFQRM 414



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 130/290 (44%), Gaps = 19/290 (6%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H+  + L L ++   G+ L+  Y +  S  + ++VF  +  RD   +  +I  + +
Sbjct: 48  GRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTE 105

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           + +   ++ +F  M+   V          L+A A L  + Q R IH   V SGL    ++
Sbjct: 106 HGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVL 165

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
              L+  YG  G V+ A  +F++    L  ++WNA +A  AQ GD    LELF  +++ G
Sbjct: 166 ANLLLHIYGSCGCVASAMLLFEKMERDL--VSWNAAIAANAQSGDLGIALELFQRMQLEG 223

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY----TCLISAMGRAGR 354
             P   + +  LT +C      ++  +I R       E GLE      T L SA  R G 
Sbjct: 224 VRPARITLVIALT-VCATIRQAQAIHFIVR-------ESGLEQTLVVSTALASAYARLGH 275

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINP 402
           L  A+ +      E D   W A+L   A HG    A+ +  R++   I+P
Sbjct: 276 LYQAKEV-FDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISP 324



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           LRAA +   + Q R IH   V  GL+    +G  L+  Y K   + D   VF   L V +
Sbjct: 36  LRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFS-RLEVRD 92

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK--- 324
             +W  ++  Y + G     + +FH ++  G   D  +FLAVL A    G   +      
Sbjct: 93  EASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 325 WIERMKVRYKLEPGLEHYTCLISAM----GRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           WI        +E GL+  + L + +    G  G +  A  + +    E D   W A ++ 
Sbjct: 153 WI--------VESGLKGKSVLANLLLHIYGSCGCVASA--MLLFEKMERDLVSWNAAIAA 202

Query: 381 SAIHGKADMASKMGKRL 397
           +A  G   +A ++ +R+
Sbjct: 203 NAQSGDLGIALELFQRM 219


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 312/563 (55%), Gaps = 18/563 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
           +H+  +K+  +AD  +  +LI  Y+K   +  + ++F+ IP  N  SWTA IS +     
Sbjct: 130 MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++++F  +L    +   P+  +L  +   C   +     G  +     +  +    F
Sbjct: 190 CREAIDMFRRLLE---MGLRPDSFSLVEVLSACKR-TGDLRSGEWIDEYITENGMVRNVF 245

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +ALV FY +  + + A+ VFD + E+++V + +MI G+A N    ++L +F  M +  
Sbjct: 246 VATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEG 305

Query: 197 VGSTMYCVSGALRAAAELAAME----QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           +    Y + G L + A L A+E       +I+G+  +     N ++GT LID Y K G +
Sbjct: 306 LKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLD----NSVLGTALIDMYAKCGRM 361

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A  VF   +   + + WNA ++G A  G     L LF  +E  G  PD  +F+ +L A
Sbjct: 362 DRAWEVF-RGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCA 420

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  E  ++   M+  + L P +EHY C++  +GRAG L++A ++  +MP E +A 
Sbjct: 421 CTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAI 480

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALL    +H    +   + K+LI + P+    YV+++N+ +   +W+E A++R +M 
Sbjct: 481 VWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMS 540

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           +R V+K  G SWIEV G VH FL GD  H  +E IY KL EL ++ +  GYVP  D +L 
Sbjct: 541 ERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLF 600

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + EK   +  HSEKLA+AFGL+S AP  K L +VKNLR+C DCHE+ K+ISR+  RE
Sbjct: 601 DIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKIL-VVKNLRVCGDCHEAIKHISRIAGRE 659

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+H F +G C+C D W
Sbjct: 660 IIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 158/347 (45%), Gaps = 13/347 (3%)

Query: 42  NYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPN 98
           N+  +N   YS R+ +    PNI  +  +I     +     S+ I+ SM R   LS  P+
Sbjct: 54  NFGNTN---YSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSM-RKEGLS--PD 107

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
             T   + K CA +  + L G+ +HSL +K       F   +L++ Y++    DNA KVF
Sbjct: 108 SFTFPFVLKACARVLDSEL-GVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVF 166

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
           D+I +++   + A I G+    +  +++ +F  +    +    + +   L A      + 
Sbjct: 167 DDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLR 226

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
               I  +   +G+ RNV V T L+D YGK G +  AR VFD  L   N ++W++M+ GY
Sbjct: 227 SGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEK-NIVSWSSMIQGY 285

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A  G     L+LF  +   G  PD Y+ + VL +    G A E   W   +    +    
Sbjct: 286 ASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLG-ALELGDWASNLINGNEFLDN 344

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
               T LI    + GR++ A  +   M  + D  VW A +S  A+ G
Sbjct: 345 SVLGTALIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAISGLAMSG 390


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 194/540 (35%), Positives = 306/540 (56%), Gaps = 9/540 (1%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSNSPLSLNIFLSMLRHPTLSFL 96
           + T  S  + +SY+ ++F+ I +PNI +W  +I   A S +P+     L + R   +S +
Sbjct: 80  IFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPA---LELYRQMHVSCI 136

Query: 97  -PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P+  T   L K  A L      G  +HS++++       F  + LVH Y+     ++A 
Sbjct: 137 EPDTHTYPFLLKAIAKLMDV-REGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAH 195

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           K+F+ + ER++V + ++I G+A N R  ++L++F +M    V    + +   L A AEL 
Sbjct: 196 KLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELG 255

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+   R  H + V  GLD N+  G  L+D Y K G +  A +VFDE +   + ++W +++
Sbjct: 256 ALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDE-MEEKSVVSWTSLI 314

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
            G A  G     LELF  LE +G  P E +F+ VL A  + G+  E   + +RMK  Y +
Sbjct: 315 VGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGI 374

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
            P +EHY C++  +GRAG ++ A      MP +P+A VWR LL    IHG   +      
Sbjct: 375 VPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARA 434

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
           +L+ + P     YV+++N+ +   RW +V +VR+ M    V+K  G S +E++ ++H F+
Sbjct: 435 QLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFV 494

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
            GDR H +TE+IY KLAE+ +  +  GYVP    +L ++ + EK  AL YHSEK+A+AF 
Sbjct: 495 MGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFM 554

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           L++ A  G  +R+VKNLR+C DCH + K IS+V +REIVVRD +R+H F +G C+C D W
Sbjct: 555 LINTAA-GIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 128/272 (47%), Gaps = 19/272 (6%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS--NS 77
           VH+ A+++  ++   + N L+  Y+       + +LF  +   N+V+W ++I+ ++    
Sbjct: 162 VHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGR 221

Query: 78  PLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           P   N  L++ R   L  + P+  T+ SL   CA L  A   G   H   +K+ L     
Sbjct: 222 P---NEALTLFREMGLRGVEPDGFTMVSLLSACAELG-ALALGRRAHVYMVKVGLDGNLH 277

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+AL+  Y++  S   A KVFDE+ E+ VV + ++IVG A N    ++L +F ++    
Sbjct: 278 AGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKG 337

Query: 197 VGSTMYCVSGALRAAAELAAMEQC-----RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           +  +     G L A +    +++      R+   + +V  ++        ++D  G+AG+
Sbjct: 338 LMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHY----GCMVDLLGRAGL 393

Query: 252 VSDARRVFDENLSVL-NSIAWNAMMAGYAQQG 282
           V  A   F +N+ +  N++ W  ++      G
Sbjct: 394 VKQAHE-FIQNMPMQPNAVVWRTLLGACTIHG 424


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/559 (35%), Positives = 306/559 (54%), Gaps = 7/559 (1%)

Query: 21  VHARALKSSQADRSIYNNLI---TNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + A A+KS   D S    LI   T     + +SY+  LF  +  P+IV + ++   +S  
Sbjct: 48  IQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRF 107

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
              L +F   +       LP+  T  SL K CA ++ A   G  LH LS+KL L D  + 
Sbjct: 108 TNPLEVFSLFVEILEDGILPDNYTFPSLLKACA-VAKALEEGRQLHCLSMKLGLDDNVYV 166

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
              L++ Y+     D+A+ VFD I E  VVCY AMI G+A+ +R  ++LS+F +M+   +
Sbjct: 167 CPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYL 226

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 +   L + A L +++  + IH +A      + V V T LID + K G + DA  
Sbjct: 227 KPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVS 286

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F E +   ++ AW+AM+  YA  G     + +F  +      PDE +FL +L A  + G
Sbjct: 287 IF-EKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              E  K+  +M  ++ + P ++HY  ++  + RAG LEDA      +P  P   +WR L
Sbjct: 346 RVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRIL 405

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L+  + H   D+A K+ +R+ +++      YVI++N+ +   +W+ V  +RKVMKDR+  
Sbjct: 406 LAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAV 465

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH-NVGD 496
           K  G S IEV   VH F +GD +   T  ++  L E+++E +  GYVP    ++H N+ D
Sbjct: 466 KVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMND 525

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
           +EK   L YHSEKLA+ FGL++  P G T+R+VKNLR+CRDCH + K IS +  R++V+R
Sbjct: 526 QEKEITLRYHSEKLAITFGLLNTPP-GTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLR 584

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           DV R+H F +G C+CGD W
Sbjct: 585 DVQRFHHFEDGKCSCGDFW 603


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 188/547 (34%), Positives = 308/547 (56%), Gaps = 7/547 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           D + +N++I  Y  +  +   LRLF  +P  N++SWT++I     H  S  +L +F  M+
Sbjct: 134 DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMM 193

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               +   P   T   +   CA+ S A   G+ +H+   KL      +  +AL+ FY+  
Sbjct: 194 -GCGVEVKPTSSTYCCVITACANAS-ALYQGVQIHAHVFKLGYSFDAYISAALITFYANC 251

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           +  +++ +VF      +VV + A++ G+  N +  D+L VF +M    V       + AL
Sbjct: 252 KQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSAL 311

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            +   L A++  R IH  AV  GL+ +V VG  LI  Y + G ++D   +F + +S  N 
Sbjct: 312 NSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIF-KRISKKNI 370

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WN+++ G AQ G     L  F+ +      PDE +F  +L+A  ++G++ +     + 
Sbjct: 371 VSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKY 430

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
                  E  L+HY C++  +GR+G+LE+AE +   MP + ++ VW  LLS   +H K +
Sbjct: 431 FSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLE 490

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +A +  K +ID+ P+  SAYV+++N+ +   RW +V+ +R+ MK R + K+ GRSWI +K
Sbjct: 491 VAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIK 550

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
           G  + FL+GDR H  ++ IY KL  L  + + LGYVP     LH+V D +K   L YHSE
Sbjct: 551 GWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSE 610

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           +LA+ FGL+S    G T+ ++KNLR+C DCH + K I+++V R+I+VRD  R+H F++G 
Sbjct: 611 RLAIGFGLIS-TVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGR 669

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 670 CSCGDYW 676



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 162/381 (42%), Gaps = 32/381 (8%)

Query: 17  DPRIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA- 73
           + RI  AR +  K S  D  +Y  +IT Y+++    ++L+LF  +P  ++VSW ++I   
Sbjct: 24  NQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGC 83

Query: 74  --HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
              ++  ++  +F  M     +S+     T+ + F     +  A         L  K+  
Sbjct: 84  FDCADLTMARKLFDEMPERSVVSW----TTMINGFLQFGKIEVA-------EGLFYKMPF 132

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
            D     S +  +    R  D   ++F E+  R+V+ + +MI G  Q+ R  ++L +F  
Sbjct: 133 RDIAAWNSMIYGYCCNGRVEDGL-RLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 191

Query: 192 MRSSDV----GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           M    V     S+ YC    + A A  +A+ Q   IH H    G   +  +   LI  Y 
Sbjct: 192 MMGCGVEVKPTSSTYCC--VITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYA 249

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
               + D+ RVF   L  +N + W A++ GY         L++F  +   G  P++ SF 
Sbjct: 250 NCKQMEDSLRVFHGKLH-MNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFT 308

Query: 308 AVLTALCNAGLAGESEKW---IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           + L + C  GL  E+  W   I    V+  LE  +     LI    R G L D   I   
Sbjct: 309 SALNSCC--GL--EALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKR 364

Query: 365 MPFEPDAAVWRALLSFSAIHG 385
           +  + +   W +++   A HG
Sbjct: 365 IS-KKNIVSWNSVIVGCAQHG 384



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 119/285 (41%), Gaps = 32/285 (11%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F   +++  + R +  D A+ VFD++   DV  Y  MI G+A+N R   +L +F +M   
Sbjct: 12  FSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVK 71

Query: 196 DVGSTMYCVSGALRAA------------AELAAMEQCRVIHGH------AVVSGL----- 232
           DV S    + G    A             E + +    +I+G        V  GL     
Sbjct: 72  DVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMP 131

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
            R++     +I GY   G V D  R+F E +   N I+W +M+ G  Q G     L LF 
Sbjct: 132 FRDIAAWNSMIYGYCCNGRVEDGLRLFQE-MPCRNVISWTSMIGGLDQHGRSEEALGLFR 190

Query: 293 LLEMRG--FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY--TCLISA 348
            +   G    P   ++  V+TA  NA    +    ++     +KL    + Y    LI+ 
Sbjct: 191 QMMGCGVEVKPTSSTYCCVITACANASALYQG---VQIHAHVFKLGYSFDAYISAALITF 247

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
                ++ED+ R+        +  +W AL++   ++ K + A K+
Sbjct: 248 YANCKQMEDSLRVFHG-KLHMNVVIWTALVTGYGLNCKHEDALKV 291


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 300/528 (56%), Gaps = 15/528 (2%)

Query: 54  RLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLAS---LFK 107
           ++F+ +   + VSW  LI   + H     +L++   M R     F+P+  TL++   +F 
Sbjct: 125 KVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRD---GFMPDTFTLSTVLPIFA 181

Query: 108 TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167
            CA +      G+ +H  ++K    +  F GS+L+  Y+     D + KVFD   + D V
Sbjct: 182 ECADIKR----GMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAV 237

Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
            + +M+ G+AQN  + ++L +F  M  + V       S  + A   L+ +   + +H + 
Sbjct: 238 LWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYL 297

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
           + +  + N+ + + LID Y K G V  ARRVF+  +   + ++W AM+ GYA  G  +  
Sbjct: 298 IRARFNDNIFISSSLIDMYCKCGNVDIARRVFN-GIQSPDIVSWTAMIMGYALHGPTTEA 356

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
             LF  +E+    P+  +FLAVLTA  +AGL     K+   M  +Y   P LEH   L  
Sbjct: 357 FVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALAD 416

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
            +GRAG L++A      M  +P ++VW  LL    +H    +A ++ K++ ++ P    +
Sbjct: 417 TLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGS 476

Query: 408 YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDI 467
           +VI++N+ S  GRW+E A++RK M+ + ++KE   SWIEVK K+HVF+A D+ H   + I
Sbjct: 477 HVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRI 536

Query: 468 YTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLR 527
              L    E+  R GYVP  +++L ++ + +KRE L  HSEKLA+ FG++S  P G T+R
Sbjct: 537 IDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIIS-TPPGTTIR 595

Query: 528 IVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++KNLR+C DCH + K+IS++V REIVVRDVNR+HRF +G+C+CGD W
Sbjct: 596 VMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 161/341 (47%), Gaps = 31/341 (9%)

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASL---FKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           ++++FL M      S  P     ASL    K+CA L    L   SLH+L+++       F
Sbjct: 31  AISLFLQM----RASVAPRSSVPASLPAALKSCAGLGLCTL-AASLHALAIRSGSFADRF 85

Query: 137 CGSALVHFYSR---FRSP-----------------DNAKKVFDEIRERDVVCYGAMIVGF 176
             +AL++   +   F  P                 ++ +KVFDE+ ERD V +  +I+G 
Sbjct: 86  TANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGC 145

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           A++ R  ++LS+  +M         + +S  L   AE A +++  V+HG+A+ +G D +V
Sbjct: 146 AEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDV 205

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            VG+ LID Y     +  + +VFD + S  +++ WN+M+AGYAQ G     L +F  +  
Sbjct: 206 FVGSSLIDMYANCTQMDYSMKVFD-SFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQ 264

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            G  P   +F +++ A  N  L     K +    +R +    +   + LI    + G ++
Sbjct: 265 AGVRPVPVTFSSLIPAFGNLSLL-RLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVD 323

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            A R+   +   PD   W A++   A+HG    A  + +R+
Sbjct: 324 IARRVFNGIQ-SPDIVSWTAMIMGYALHGPTTEAFVLFERM 363



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 118/261 (45%), Gaps = 9/261 (3%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS- 77
           +VH  A+K+    D  + ++LI  Y+    + YS+++F+     + V W ++++ ++ + 
Sbjct: 191 VVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNG 250

Query: 78  --PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               +L IF  ML+       P   T +SL     +LS     G  LH+  ++   +D  
Sbjct: 251 SVEEALGIFRRMLQ---AGVRPVPVTFSSLIPAFGNLS-LLRLGKQLHAYLIRARFNDNI 306

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  S+L+  Y +  + D A++VF+ I+  D+V + AMI+G+A +    ++  +F  M   
Sbjct: 307 FISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELG 366

Query: 196 DVGSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           +V          L A +    ++   +  +  +   G   ++     L D  G+AG + +
Sbjct: 367 NVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDE 426

Query: 255 ARRVFDENLSVLNSIAWNAMM 275
           A     E      S  W+ ++
Sbjct: 427 AYNFISEMKIKPTSSVWSTLL 447


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/554 (34%), Positives = 313/554 (56%), Gaps = 13/554 (2%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLS 86
           +S+  D   +  LI  Y+    +  + +LF+ +P  ++VSW A+I+ ++    S    L 
Sbjct: 189 QSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLL 248

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS-----AL 141
                  +  PN+ T+ S+   CA  S+A   G S+ S      + D+  C +     AL
Sbjct: 249 FEDMRKANVPPNESTIVSVLSACAQ-SNALDLGNSMRSW-----IEDRGLCSNLKLVNAL 302

Query: 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201
           +  YS+      A+++FD++ ERDV+ +  MI G+       ++L++F +M +S V  T 
Sbjct: 303 IDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTE 362

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
                 L + A L A++  + IH +   +    +  + T LID Y K G +  AR+VFD 
Sbjct: 363 ITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFD- 421

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            + + +  +WNAM+ G A  G      ELF  +   G  P+E +F+ +L+A  +AGL   
Sbjct: 422 GMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDL 481

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
            +++   M   YK+ P  +HY C+I  +GRAG  E+AE +   M  +PD A+W +LL   
Sbjct: 482 GQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGAC 541

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
             HG+ ++   + +RL ++ P +  AYV+++N+ +G G+WD+VA +R  + DR ++K  G
Sbjct: 542 RDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPG 601

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
            + IEV   VH FL GD++H ++EDIY  L E+ E+ +  G+V    E+L+++ +  K  
Sbjct: 602 CTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEG 661

Query: 502 ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
           AL +HSEKLA+AFGL+S  P G  +RI+KNLR+CR+CH + K IS++  REI+ RD NR+
Sbjct: 662 ALSHHSEKLAIAFGLISTKP-GTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF 720

Query: 562 HRFLNGSCTCGDLW 575
           H F +GSC+C D W
Sbjct: 721 HHFKDGSCSCNDYW 734



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 177/396 (44%), Gaps = 45/396 (11%)

Query: 44  SKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSFLPNQR 100
           S+S  +SY++ LFN I  PN+  W ++I   S S    L+L  F+ M+        PN  
Sbjct: 74  SRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYS---GVEPNSY 130

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T   L K+CA L+ A   G  +H+  LKL      F  ++L++ Y++    +NA+ VFD+
Sbjct: 131 TFPFLLKSCAKLASAHE-GKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQ 189

Query: 161 IRER-------------------------------DVVCYGAMIVGFAQNSRLVDSLSVF 189
              R                               DVV + AMI G+AQ  R  ++L +F
Sbjct: 190 SNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLF 249

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            DMR ++V      +   L A A+  A++    +       GL  N+ +   LID Y K 
Sbjct: 250 EDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKC 309

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  AR +FD+ L   + I+WN M+ GY         L LF  +   G  P E +FL++
Sbjct: 310 GDLQTARELFDDMLE-RDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSI 368

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L +  + G A +  KWI     +          T LI    + G +  A ++   M  + 
Sbjct: 369 LPSCAHLG-AIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKS 427

Query: 370 DAAVWRALLSFSAIHGKADMA----SKMGKRLIDIN 401
            A+ W A++   A+HG+AD A    SKM    I+ N
Sbjct: 428 LAS-WNAMICGLAMHGQADKAFELFSKMSSDGIEPN 462



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 138/325 (42%), Gaps = 54/325 (16%)

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
            HP+L  L   +++ + FK              +H+  +K  LH+  F  S L+ F +  
Sbjct: 29  EHPSLKLLSKCQSIRT-FK-------------QIHAHIIKTGLHNTLFALSKLIEFSAVS 74

Query: 149 RSPD--NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           RS D   A  +F+ I E ++  + +MI G + +     +L  F  M  S V    Y    
Sbjct: 75  RSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPF 134

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN---- 262
            L++ A+LA+  + + IH H +  G   +V + T LI+ Y ++G +++A+ VFD++    
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194

Query: 263 --------------------------LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
                                     + V + ++WNAM+AGYAQ G     L LF  +  
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254

Query: 297 RGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
               P+E + ++VL+A   +    L      WIE       L   L+    LI    + G
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDR----GLCSNLKLVNALIDMYSKCG 310

Query: 354 RLEDAERIAMAMPFEPDAAVWRALL 378
            L+ A  +   M  E D   W  ++
Sbjct: 311 DLQTARELFDDM-LERDVISWNVMI 334


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 311/559 (55%), Gaps = 22/559 (3%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNI 83
           KSS  D   +  LIT Y+    L  + RLF  IP  + VSW A+I+ ++ S     +L  
Sbjct: 192 KSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAF 251

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG------LSLHSLSLKLSLHDKPFC 137
           F  M R    +  PN+ T+ ++   CA  S +   G      +  H L   L L +    
Sbjct: 252 FQEMKR---ANVAPNESTMVTVLSACAQ-SGSLELGNWVRSWIEDHGLGSNLRLVN---- 303

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
             AL+  YS+    D A+ +F+ I E+D++ +  MI G++  +   ++L++F  M+ S+V
Sbjct: 304 --ALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNV 361

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD-RNVIVGTGLIDGYGKAGIVSDAR 256
                     L A A L A++  + IH +     L   N  + T LID Y K G +  A+
Sbjct: 362 EPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAK 421

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VF   +   +  +WNAM++G A  G  +  LELF  +   GF PD+ +F+ VL+A  +A
Sbjct: 422 QVF-AGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHA 480

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL     +    M   Y + P L+HY C+I  +GRAG  ++AE +   M  +PD A+W +
Sbjct: 481 GLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGS 540

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    +HG  ++     K L ++ P +  AYV+++N+ +  GRWD+VA +R  + D+ +
Sbjct: 541 LLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGM 600

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S IEV   VH FL GD++HE+++DIY  L E+ +  E+ G+VP   E+L+++ +
Sbjct: 601 KKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDE 660

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K  +L +HSEKLA+AFGL+S  P   T+RIVKNLR+C +CH + K IS++  REI+ R
Sbjct: 661 EWKEGSLSHHSEKLAIAFGLISTKPE-TTIRIVKNLRVCGNCHSAIKLISKIFNREIIAR 719

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F +GSC+C D W
Sbjct: 720 DRNRFHHFKDGSCSCMDYW 738



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 210/459 (45%), Gaps = 68/459 (14%)

Query: 18  PRIVHARALKSSQADRSIYNNLI------TNYSKSNL-----------LSYSLRLFNHIP 60
           P +      KS Q  + I++ +I      T ++ S L           LSY+L LF  I 
Sbjct: 34  PSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 61  SPNIVSWTALISAH--SNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
            PN   W  +I  +  S+SP+ +++ ++ ML        PN  T   L K+CA +  A  
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRML---LCGVEPNSYTFPFLLKSCAKVG-ATQ 149

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFY---------------SRFRSP----------- 151
            G  +H   LKL L   PF  ++L++ Y               S  R             
Sbjct: 150 EGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYT 209

Query: 152 -----DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
                D+A+++F+EI  RD V + AMI G+AQ+ R  ++L+ F +M+ ++V      +  
Sbjct: 210 LRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVT 269

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A A+  ++E    +       GL  N+ +   LID Y K G +  AR +F E +   
Sbjct: 270 VLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLF-EGICEK 328

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + I+WN M+ GY+        L LF  ++     P++ +F+++L A    G A +  KWI
Sbjct: 329 DIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG-ALDLGKWI 387

Query: 327 ERMKVRYKLEPGLEH---YTCLISAMGRAGRLEDAERIAMAMPFEPDA-AVWRALLSFSA 382
                +  L  GL +   +T LI    + G +E A+++   M  +P +   W A++S  A
Sbjct: 388 HAYIDKKFL--GLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM--KPKSLGSWNAMISGLA 443

Query: 383 IHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVG 419
           +HG A+MA ++ +++ D    P DD  +V V +  S  G
Sbjct: 444 MHGHANMALELFRQMRDEGFEP-DDITFVGVLSACSHAG 481



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 138/321 (42%), Gaps = 41/321 (12%)

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF--YSRF 148
           P    L N  +L +L  TC S  +       +HS  +K  LH+  F  S L+ F   S F
Sbjct: 25  PPYKLLQNHPSL-TLLSTCKSFQNL----KQIHSQIIKTGLHNTQFALSKLIEFCAISPF 79

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
            +   A  +F+ I + +   +  MI G + +S  V ++  +  M    V    Y     L
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLD-------------------------------RNVI 237
           ++ A++ A ++ + IHGH +  GL+                               R+ +
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
             T LI GY   G + DARR+F+E + V ++++WNAM+AGYAQ G     L  F  ++  
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEE-IPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
             AP+E + + VL+A   +G + E   W+      + L   L     LI    + G L+ 
Sbjct: 259 NVAPNESTMVTVLSACAQSG-SLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDK 317

Query: 358 AERIAMAMPFEPDAAVWRALL 378
           A  +   +  E D   W  ++
Sbjct: 318 ARDLFEGI-CEKDIISWNVMI 337


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 199/566 (35%), Positives = 315/566 (55%), Gaps = 15/566 (2%)

Query: 16  TDPRIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T  RIVH   ++S  + D  + N L+  Y+K   L  + ++F+ +P  + V+WT LIS +
Sbjct: 68  TQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGY 127

Query: 75  S--NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           S  + P  +L +F  MLR     F PN+ TL+S+ K  A+       G  LH   +K   
Sbjct: 128 SQHDRPFDALVLFNQMLR---FGFSPNEFTLSSVIKAAAAERRGCC-GHQLHGFCVKCGF 183

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                 GSAL+  Y+R+   D+A+ VFD +  R+ V + A+I G A+      +L +F  
Sbjct: 184 DSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQG 243

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M       + +  +    A +    +EQ + +H + + SG       G  L+D Y K+G 
Sbjct: 244 MLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 303

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DAR++FD  L+  + ++WN+++  YAQ G  +  +  F  +   G  P+E SFL+VLT
Sbjct: 304 IHDARKIFDR-LAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLT 362

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLE--HYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           A  ++GL  E   + E MK   K    LE  HY  ++  +GRAG L  A R    MP EP
Sbjct: 363 ACSHSGLLDEGWHYYELMK---KDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEP 419

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
            AA+W+ALL+   +H   ++ +   + + +++P D   +VI+ N+ +  GRW++ A VRK
Sbjct: 420 TAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRK 479

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
            MK+  V+KE   SW+E++  +H+F+A D  H + E+I  K  E++ + + LGYVP    
Sbjct: 480 KMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSH 539

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           ++ +V  +E+   L YHSEK+ALAF L++  P G T+ I KN+R+C DCH + K  S+ V
Sbjct: 540 VIVHVDQQEREVNLQYHSEKIALAFALLN-TPPGSTIHIKKNIRVCGDCHSAIKLASKAV 598

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
            REI+VRD NR+H F +G+C+C D W
Sbjct: 599 GREIIVRDTNRFHHFKDGACSCKDYW 624



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 3/172 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L+       + Q R++HGH + S    ++++   L++ Y K G + +AR+VFD+ +   +
Sbjct: 58  LKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDK-MPERD 116

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            + W  +++GY+Q       L LF+ +   GF+P+E++  +V+ A   A   G     + 
Sbjct: 117 FVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAA-AERRGCCGHQLH 175

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
              V+   +  +   + L+    R G ++DA+ +  A+    D + W AL++
Sbjct: 176 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-WNALIA 226


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 186/559 (33%), Positives = 315/559 (56%), Gaps = 10/559 (1%)

Query: 21  VHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA+ ++S   +D  +   L   Y K   +  +  +F  +P+ ++++W  +I    +S  
Sbjct: 268 IHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQ 327

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +  +F  ML+       P++ T  ++   CA        G  +H+ ++K  L     
Sbjct: 328 LEEAHGMFHRMLKE---CVAPDRVTYLAILSACARPG-GLACGKEIHARAVKDGLVSDVR 383

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+AL++ YS+  S  +A++VFD + +RDVV + A++ G+A   ++V+S S F  M    
Sbjct: 384 FGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQG 443

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V +        L+A +   A++  + IH   V +G+  ++ V   L+  Y K G V DA 
Sbjct: 444 VEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAI 503

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RV  E +S  + + WN ++ G AQ G     L+ F +++     P+  +F+ V++A    
Sbjct: 504 RV-SEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVR 562

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            L  E  +    M+  Y + P  +HY C++  + RAG L +AE + + MPF+P AA+W A
Sbjct: 563 NLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGA 622

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+    HG  ++  +  ++ + + P +   YV ++ + +  G W +VA++RK+MK+R V
Sbjct: 623 LLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGV 682

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE GRSWIEV G+VH F+AGD+ H RTE+IY++L  L ++ + LGYVP    ++H++  
Sbjct: 683 KKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQ 742

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K  A+ +HSEKLA+A+GL+S  P    +R+ KNLR+C DCH + K+IS++  REI+ R
Sbjct: 743 EGKERAVCHHSEKLAIAYGLISTPPE-TPIRVSKNLRVCTDCHTATKFISKITGREIIAR 801

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D +R+H F NG C+CGD W
Sbjct: 802 DAHRFHHFKNGECSCGDYW 820



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 168/355 (47%), Gaps = 10/355 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIF--LSMLRHPT 92
           I N L+  Y     ++ + RLF+   + ++VSW  +IS +++  L    F   ++++   
Sbjct: 81  IINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEG 140

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           L   P++ T  S+   C+S + A  +G  +H   ++  L +    G+AL+  Y++  S  
Sbjct: 141 LE--PDKFTFVSILSACSSPA-ALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVR 197

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A++VFD +  RD V +  +   +A++    +SL  +  M    V  +       L A  
Sbjct: 198 DARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACG 257

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
            LAA+E+ + IH   V S    +V V T L   Y K G V DAR VF E L   + IAWN
Sbjct: 258 SLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVF-ECLPNRDVIAWN 316

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN-AGLAGESEKWIERMKV 331
            M+ G    G       +FH +     APD  ++LA+L+A     GLA   E  I    V
Sbjct: 317 TMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKE--IHARAV 374

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           +  L   +     LI+   +AG ++DA ++   MP + D   W AL+   A  G+
Sbjct: 375 KDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVGGYADCGQ 428



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 177/373 (47%), Gaps = 11/373 (2%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH R +++  A+  ++ N LI+ Y+K   +  + R+F+ + S + VSWT L  A++ S
Sbjct: 165 REVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAES 224

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                SL  + +ML+       P++ T  ++   C SL+ A   G  +H+  ++   H  
Sbjct: 225 GYAQESLKTYHAMLQE---GVRPSRITYMNVLSACGSLA-ALEKGKQIHAQIVESEHHSD 280

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +AL   Y +  +  +A++VF+ +  RDV+ +  MI G   + +L ++  +F  M  
Sbjct: 281 VRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLK 340

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V          L A A    +   + IH  AV  GL  +V  G  LI+ Y KAG + D
Sbjct: 341 ECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKD 400

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR+VFD  +   + ++W A++ GYA  G        F  +  +G   ++ +++ VL A C
Sbjct: 401 ARQVFD-RMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKA-C 458

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +  +A +  K I    V+  +   L     L+S   + G +EDA R++  M    D   W
Sbjct: 459 SNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTR-DVVTW 517

Query: 375 RALLSFSAIHGKA 387
             L+   A +G+ 
Sbjct: 518 NTLIGGLAQNGRG 530



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 4/294 (1%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           L ++C   +     G  +H   L+  +    +  + L+  Y    S + A+++FD+   +
Sbjct: 50  LLQSCVK-AKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNK 108

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
            VV +  MI G+A      ++ ++F  M+   +    +     L A +  AA+   R +H
Sbjct: 109 SVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVH 168

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
              + +GL  N  VG  LI  Y K G V DARRVFD  ++  + ++W  +   YA+ G  
Sbjct: 169 VRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDA-MASRDEVSWTTLTGAYAESGYA 227

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              L+ +H +   G  P   +++ VL+A C +  A E  K I    V  +    +   T 
Sbjct: 228 QESLKTYHAMLQEGVRPSRITYMNVLSA-CGSLAALEKGKQIHAQIVESEHHSDVRVSTA 286

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           L     + G ++DA  +   +P   D   W  ++      G+ + A  M  R++
Sbjct: 287 LTKMYIKCGAVKDAREVFECLP-NRDVIAWNTMIGGLVDSGQLEEAHGMFHRML 339


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 190/578 (32%), Positives = 312/578 (53%), Gaps = 40/578 (6%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
           S +N +++  +    +  +  LF  +P  +IVSW A+I+ ++ + L   +L +F  ML  
Sbjct: 231 SSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHE 290

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
            +++  P++ T+ S+   CA+L +  + G  +H+  L+  +       +AL+  Y++  S
Sbjct: 291 SSMA--PDEFTITSVLSACANLGNVRI-GKQVHAYILRTEMAYNSQVTNALISTYAKSGS 347

Query: 151 PDNAKKVFDEIRE---------------------------------RDVVCYGAMIVGFA 177
            +NA+++ D+  E                                 RDVV + AMIVG+ 
Sbjct: 348 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 407

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN R  +++ +F  M +       Y ++  L   A LA ++  + IH  A+ S L+R+  
Sbjct: 408 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSS 467

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           V   +I  Y ++G    ARR+FD+      +I W +M+   AQ G     + LF  +   
Sbjct: 468 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 527

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  PD  +++ VL+A  +AG   E +++ +++K  +++ P + HY C++  + RAG   +
Sbjct: 528 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSE 587

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           A+     MP EPDA  W +LLS   +H  A++A    ++L+ I+P +  AY  +ANV S 
Sbjct: 588 AQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSA 647

Query: 418 VGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEE 477
            GRW + A + K  K++ VRKE G SW  ++ K+HVF A D +H + + +Y   A + EE
Sbjct: 648 CGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEE 707

Query: 478 CERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRD 537
            +  G+VP    +LH+V D  K E L  HSEKLA+AFGL+S  P   TLR++KNLR+C D
Sbjct: 708 IKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLIS-TPEKTTLRVMKNLRVCND 766

Query: 538 CHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           CH + K IS+V +REI+VRD  R+H F +G C+C D W
Sbjct: 767 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/454 (22%), Positives = 193/454 (42%), Gaps = 69/454 (15%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N+L++ ++KS  L+ +  +F  +P  + VSWT ++   + +        ++L      F
Sbjct: 101 WNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGF 160

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF------- 148
            P Q TL ++  +CA ++ A   G  +HS  +KL L       +++++ Y +        
Sbjct: 161 TPTQFTLTNVLSSCA-VTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETAS 219

Query: 149 ----RSP--------------------DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
               R P                    D A+ +F+ +  R +V + AMI G+ QN     
Sbjct: 220 TVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAK 279

Query: 185 SLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           +L +F+ M   S +    + ++  L A A L  +   + +H + + + +  N  V   LI
Sbjct: 280 ALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALI 339

Query: 244 DGYGKAGIVSDARRVFDENL-----------------------------SVLNS---IAW 271
             Y K+G V +ARR+ D+++                              V+N+   +AW
Sbjct: 340 STYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAW 399

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            AM+ GY Q G     ++LF  +   G  P+ Y+  AVL+ +C +    +  K I    +
Sbjct: 400 TAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLS-VCASLACLDYGKQIHCRAI 458

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           R  LE        +I+   R+G    A R+   + +  +   W +++   A HG+ + A 
Sbjct: 459 RSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAV 518

Query: 392 KMGKRLI--DINPYDDSAYVIVANVLSGVGRWDE 423
            + + ++   + P D   YV V +  S  G  +E
Sbjct: 519 GLFEEMLRAGVEP-DRITYVGVLSACSHAGFVNE 551



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 43/282 (15%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  ++L+  +++     +A+ VF E+ ERD V +  M+VG  +  R  +++    DM + 
Sbjct: 99  FTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTAD 158

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
               T + ++  L + A   A    R +H   V  GL   V V   +++ YGK G    A
Sbjct: 159 GFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETA 218

Query: 256 RRVFD------------------------------ENLSVLNSIAWNAMMAGYAQQGDQS 285
             VF+                              E++   + ++WNAM+AGY Q G  +
Sbjct: 219 STVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDA 278

Query: 286 TVLELF-HLLEMRGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGLEH 341
             L+LF  +L     APDE++  +VL+A  N G   +  +   +I R ++ Y  +     
Sbjct: 279 KALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV---- 334

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
              LIS   ++G +E+A RI M    E D  V    +SF+A+
Sbjct: 335 TNALISTYAKSGSVENARRI-MDQSMETDLNV----ISFTAL 371


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 313/559 (55%), Gaps = 44/559 (7%)

Query: 21  VHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNS 77
           +H R + +S  +     N +TN Y+K   L  +  LF+ + + N+VSW ++IS +  +  
Sbjct: 177 IHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQ 236

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P +       ++   L  +P+Q T++++      LS  F  G                  
Sbjct: 237 PETCTKLFCEMQSSGL--MPDQVTISNI------LSAYFQCGY----------------- 271

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
                         D A K F EI+E+D VC+  M+VG AQN +  D+L +F +M   +V
Sbjct: 272 -------------IDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENV 318

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               + +S  + + A LA++ Q + +HG AV+ G+D +++V + L+D Y K G  +DA  
Sbjct: 319 RPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWI 378

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF   L+  N I+WN+M+ GYAQ G     L L+  +      PD  +F+ VL+A  +AG
Sbjct: 379 VFKRMLT-RNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAG 437

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L    + +   +   + + P  +HY+C+I+ +GRAG ++ A  +  +M FEP+  +W  L
Sbjct: 438 LVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTL 497

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           LS   I+   +      + L +++P++   Y++++N+ +  GRW +VA VR +MK+ +++
Sbjct: 498 LSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIK 557

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K    SWIE+  +VH F+A DR H  TE IY +L  L+++ +  G+ P  + +LH+V + 
Sbjct: 558 KFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEE 617

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKT-LRIVKNLRICRDCHESFKYISRVVEREIVVR 556
           EK +++ YHSEKLALAF L+   P G+T +RI+KN+R+C DCH   K++S+++ R I++R
Sbjct: 618 EKFDSICYHSEKLALAFWLIK-KPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILR 676

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D+NR+H F+ G C+C D W
Sbjct: 677 DINRFHHFIEGRCSCKDSW 695



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 146/313 (46%), Gaps = 29/313 (9%)

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           L  PT +FL N+  L  L+    +LS A         L  K+S  D  F  +A++  YS+
Sbjct: 52  LYQPTDTFLQNR--LLHLYAKSGNLSDA-------RDLFDKMSRRD-VFSWNAMLSAYSK 101

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             + ++ + VFD++   D V Y  +I GF+ N     +L  F  M+     ST Y     
Sbjct: 102 SGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSV 161

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A ++L  +++ + IHG  V + L  +V V   L + Y K G +  AR +FD  ++  N
Sbjct: 162 LHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNK-N 220

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++WN+M++GY Q G   T  +LF  ++  G  PD+ +   +L+A    G   E+ K   
Sbjct: 221 VVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFR 280

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE---PD----------AAVW 374
            +K + K+      +T ++    + G+ EDA  +   M  E   PD           A  
Sbjct: 281 EIKEKDKV-----CWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARL 335

Query: 375 RALLSFSAIHGKA 387
            +L    A+HGKA
Sbjct: 336 ASLCQGQAVHGKA 348



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 126/313 (40%), Gaps = 68/313 (21%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS------------- 77
            D  + N L+  Y+KS  LS +  LF+ +   ++ SW A++SA+S S             
Sbjct: 56  TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM 115

Query: 78  ----PLSLNIFLS--------------MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119
                +S N  ++               +R     F     T  S+   C+ L      G
Sbjct: 116 SVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLD-IKRG 174

Query: 120 LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
             +H   +  SL +  F  +AL + Y++  + D A+ +FD +  ++VV + +MI G+ QN
Sbjct: 175 KQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQN 234

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
            +      +F +M+S                                   SGL  + +  
Sbjct: 235 GQPETCTKLFCEMQS-----------------------------------SGLMPDQVTI 259

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           + ++  Y + G + +A + F E +   + + W  MM G AQ G +   L LF  + +   
Sbjct: 260 SNILSAYFQCGYIDEACKTFRE-IKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENV 318

Query: 300 APDEYSFLAVLTA 312
            PD ++  +V+++
Sbjct: 319 RPDNFTISSVVSS 331


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 297/556 (53%), Gaps = 4/556 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H+ ++K+  ++D  +   LI  YSK   L  + ++   +   ++VSWT++I+ +     
Sbjct: 368 IHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 +          P+   LAS    CA +  A   GL +H+              +
Sbjct: 428 CEEALATFKEMQDCGVWPDNIGLASAASACAGIK-AMRQGLQIHARVYVSGYAADISIWN 486

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            LV+ Y+R    + A  +F EI  +D + +  +I GF Q+     +L VF  M  +    
Sbjct: 487 TLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKY 546

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            ++    A+ A A LA ++Q + +HG AV +G      V   LI  YGK G + DA+ +F
Sbjct: 547 NVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIF 606

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +S+ N ++WN ++   +Q G     L+LF  ++  G  P++ +F+ VL A  + GL 
Sbjct: 607 SE-MSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV 665

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E   + + M   Y L P  +HY C++  +GRAG+L+ A R    MP   +A +WR LLS
Sbjct: 666 EEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLS 725

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +H   ++     K L+++ P+D ++YV+++N  +  G+W    +VRK+MKDR +RKE
Sbjct: 726 ACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKE 785

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            GRSWIEVK  VH F  GDR+H  ++ IY  L+EL +   ++GY      + H     +K
Sbjct: 786 PGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQK 845

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
               + HSEKLA+AFGL++  P    LR++KNLR+C DCH   K+ S V  REIV+RDV 
Sbjct: 846 DPTAFVHSEKLAVAFGLMT-LPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVY 904

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +GSC+CGD W
Sbjct: 905 RFHHFNSGSCSCGDYW 920



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 189/421 (44%), Gaps = 18/421 (4%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
           +H+  LK+  + D     +L+  Y K   +  +  +FN     N+V W  ++ A+   S+
Sbjct: 267 LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S  IF  M         PN+ T   + +TC       L G  +HSLS+K       +
Sbjct: 327 LAKSFEIFGQM---QATGIHPNKFTYPCILRTCTCTGQIEL-GEQIHSLSIKNGFESDMY 382

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
               L+  YS++R  D A+K+ + + +RDVV + +MI G+ Q+    ++L+ F +M+   
Sbjct: 383 VSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      ++ A  A A + AM Q   IH    VSG   ++ +   L++ Y + G   +A 
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAF 502

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F E +   + I WN +++G+ Q       L +F  +   G   + ++F++ ++AL N 
Sbjct: 503 SLFRE-IDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANL 561

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               +  K +    V+       E    LIS  G+ G +EDA+ I   M    + + W  
Sbjct: 562 ADIKQG-KQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-WNT 619

Query: 377 LLSFSAIHGKA----DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +++  + HG+     D+  +M +  +  N   D  ++ V    S VG  +E     K M 
Sbjct: 620 IITSCSQHGRGLEALDLFDQMKQEGLKPN---DVTFIGVLAACSHVGLVEEGLSYFKSMS 676

Query: 433 D 433
           +
Sbjct: 677 N 677



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 178/388 (45%), Gaps = 7/388 (1%)

Query: 21  VHARAL-KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA ++ +   ADR I N LI  Y+K+ L+  + ++F  + S + VSW A++S ++   L
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
               F    +    + +P    L+S+   C      F  G  +H+   K +   + F G+
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTK-GKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  Y  F S   A++VF ++   D V +  +I G AQ      +L +F +M+ S +  
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               V+  L A A +  +++ + +H + + +G+  + I    L+D Y K G +  A  +F
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL-TALCNAGL 318
           +      N + WN M+  Y Q  D +   E+F  ++  G  P+++++  +L T  C   +
Sbjct: 304 NLG-DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQI 362

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E  + I  + ++   E  +     LI    +   L+ A +I + M  + D   W +++
Sbjct: 363 --ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKI-LEMLEKRDVVSWTSMI 419

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDS 406
           +    H   + A    K + D   + D+
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDN 447



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 1/216 (0%)

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           L    + C    + +   L +H+ S+   L      G+ L+  Y++      A++VF E+
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
             RD V + AM+ G+AQ     ++  +++ M  + V  T Y +S  L A  +     Q R
Sbjct: 105 SSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
           +IH             VG  LI  Y   G    A RVF + L   + + +N +++G+AQ 
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDML-FCDRVTFNTLISGHAQC 223

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           G     L++F  +++ G  PD  +  ++L A  + G
Sbjct: 224 GHGECALQIFDEMQLSGLRPDCVTVASLLAACASVG 259


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/588 (34%), Positives = 316/588 (53%), Gaps = 39/588 (6%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+++    DR++   L   Y+ S+ L  ++ L    P P  V +T+ I AHS+  L
Sbjct: 54  LHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGL 113

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            L     +        +P   TL+S    C    H    G +LH+ + KL+L    +  +
Sbjct: 114 HLAALALLSEMLGRGLIPTSHTLSSSLPAC----HGLALGRALHAYAFKLALAGDSYVAT 169

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRE-------------------------------RDVVC 168
           AL+  Y+R    D A+ +FDE+ +                               +D +C
Sbjct: 170 ALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFIC 229

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           + AMI G+ Q+ R  ++L +F  M  S V      +  AL A A+L   E  R +H +  
Sbjct: 230 WNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVK 289

Query: 229 VS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
            S  +  N  VGT LID Y K G + DA  VF+ ++   + + WNAM+ GYA  GD    
Sbjct: 290 NSRRVQLNARVGTALIDMYCKCGSLEDAVSVFN-SIGDKDIVVWNAMINGYAMHGDSRKA 348

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           LE+F  L  +G  P + +F+ +L A  ++GL  E  ++ + M+  Y + P +EHY C++ 
Sbjct: 349 LEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVD 408

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
            +GRAG +E+A  +  +M   PD  +W +LL+   +H    +  ++   L+     +   
Sbjct: 409 LLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGM 468

Query: 408 YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDI 467
           Y++++N+ + VG W+EVA VR +MK   ++KE G S IEV  KV+ F+AGD  H RT++I
Sbjct: 469 YILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEI 528

Query: 468 YTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLR 527
           Y  L ++    +  G+VP  + +LH++ +  K +AL  HSEKLA+AFGL+S AP G+T++
Sbjct: 529 YAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAP-GETIK 587

Query: 528 IVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IVKNLR C DCH   K IS++  R+IV RD NR+H F++GSCTCGD W
Sbjct: 588 IVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/588 (34%), Positives = 316/588 (53%), Gaps = 39/588 (6%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+++    DR++   L   Y+ S+ L  ++ L    P P  V +T+ I AHS+  L
Sbjct: 53  LHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGL 112

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            L     +        +P   TL+S    C    H    G +LH+ + KL+L    +  +
Sbjct: 113 HLAALALLSEMLGRGLIPTSHTLSSSLPAC----HGLALGRALHAYAFKLALAGDSYVAT 168

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRE-------------------------------RDVVC 168
           AL+  Y+R    D A+ +FDE+ +                               +D +C
Sbjct: 169 ALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFIC 228

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           + AMI G+ Q+ R  ++L +F  M  S V      +  AL A A+L   E  R +H +  
Sbjct: 229 WNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVK 288

Query: 229 VS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
            S  +  N  VGT LID Y K G + DA  VF+ ++   + + WNAM+ GYA  GD    
Sbjct: 289 NSRRVQLNARVGTALIDMYCKCGSLEDAVSVFN-SIGDKDIVVWNAMINGYAMHGDSRKA 347

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           LE+F  L  +G  P + +F+ +L A  ++GL  E  ++ + M+  Y + P +EHY C++ 
Sbjct: 348 LEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVD 407

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
            +GRAG +E+A  +  +M   PD  +W +LL+   +H    +  ++   L+     +   
Sbjct: 408 LLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGM 467

Query: 408 YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDI 467
           Y++++N+ + VG W+EVA VR +MK   ++KE G S IEV  KV+ F+AGD  H RT++I
Sbjct: 468 YILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEI 527

Query: 468 YTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLR 527
           Y  L ++    +  G+VP  + +LH++ +  K +AL  HSEKLA+AFGL+S AP G+T++
Sbjct: 528 YAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAP-GETIK 586

Query: 528 IVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IVKNLR C DCH   K IS++  R+IV RD NR+H F++GSCTCGD W
Sbjct: 587 IVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/547 (34%), Positives = 308/547 (56%), Gaps = 7/547 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           D + +N++I  Y  +  +   LRLF  +P  N++SWT++I     H  S  +L +F  M+
Sbjct: 118 DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMM 177

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               +   P   T   +   CA+ S A   G+ +H+   KL      +  +AL+ FY+  
Sbjct: 178 -GCGVEVKPTSSTYCCVITACANAS-ALYQGVQIHAHVFKLGYSFDAYISAALITFYANC 235

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           +  +++ +VF      +VV + A++ G+  N +  D+L VF +M    V       + AL
Sbjct: 236 KQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSAL 295

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            +   L A++  R IH  AV  GL+ +V VG  LI  Y + G ++D   +F + +S  N 
Sbjct: 296 NSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIF-KRISKKNI 354

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WN+++ G AQ G     L  F+ +      PDE +F  +L+A  ++G++ +     + 
Sbjct: 355 VSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKY 414

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
                  E  L+HY C++  +GR+G+LE+AE +   MP + ++ VW  LLS   +H K +
Sbjct: 415 FSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLE 474

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +A +  K +ID+ P+  SAYV+++N+ +   RW +V+ +R+ MK R + K+ GRSWI +K
Sbjct: 475 VAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIK 534

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
           G  + FL+GDR H  ++ IY KL  L  + + LGYVP     LH+V D +K   L YHSE
Sbjct: 535 GWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSE 594

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           +LA+ FGL+S    G T+ ++KNLR+C DCH + K I+++V R+I+VRD  R+H F++G 
Sbjct: 595 RLAIGFGLIS-TVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGR 653

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 654 CSCGDYW 660



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 162/381 (42%), Gaps = 32/381 (8%)

Query: 17  DPRIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA- 73
           + RI  AR +  K S  D  +Y  +IT Y+++    ++L+LF  +P  ++VSW ++I   
Sbjct: 8   NQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGC 67

Query: 74  --HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
              ++  ++  +F  M     +S+     T+ + F     +  A         L  K+  
Sbjct: 68  FDCADLTMARKLFDEMPERSVVSW----TTMINGFLQFGKIEVA-------EGLFYKMPF 116

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
            D     S +  +    R  D   ++F E+  R+V+ + +MI G  Q+ R  ++L +F  
Sbjct: 117 RDIAAWNSMIYGYCCNGRVEDGL-RLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 175

Query: 192 MRSSDV----GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           M    V     S+ YC    + A A  +A+ Q   IH H    G   +  +   LI  Y 
Sbjct: 176 MMGCGVEVKPTSSTYCC--VITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYA 233

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
               + D+ RVF   L  +N + W A++ GY         L++F  +   G  P++ SF 
Sbjct: 234 NCKQMEDSLRVFHGKLH-MNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFT 292

Query: 308 AVLTALCNAGLAGESEKW---IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           + L + C  GL  E+  W   I    V+  LE  +     LI    R G L D   I   
Sbjct: 293 SALNSCC--GL--EALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKR 348

Query: 365 MPFEPDAAVWRALLSFSAIHG 385
           +  + +   W +++   A HG
Sbjct: 349 IS-KKNIVSWNSVIVGCAQHG 368



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 114/274 (41%), Gaps = 32/274 (11%)

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           R +  D A+ VFD++   DV  Y  MI G+A+N R   +L +F +M   DV S    + G
Sbjct: 7   RNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKG 66

Query: 207 ALRAA------------AELAAMEQCRVIHGH------AVVSGL-----DRNVIVGTGLI 243
               A             E + +    +I+G        V  GL      R++     +I
Sbjct: 67  CFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMI 126

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG--FAP 301
            GY   G V D  R+F E +   N I+W +M+ G  Q G     L LF  +   G    P
Sbjct: 127 YGYCCNGRVEDGLRLFQE-MPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKP 185

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAE 359
              ++  V+TA  NA    +    ++     +KL    + Y    LI+      ++ED+ 
Sbjct: 186 TSSTYCCVITACANASALYQG---VQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 242

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           R+        +  +W AL++   ++ K + A K+
Sbjct: 243 RVFHG-KLHMNVVIWTALVTGYGLNCKHEDALKV 275


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 191/574 (33%), Positives = 307/574 (53%), Gaps = 41/574 (7%)

Query: 36   YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPT 92
            +N +I  Y+++ +L  +  LF  +P  N  SW A+I+    +  S  +L + + + R  +
Sbjct: 492  WNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGS 551

Query: 93   LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
            +   P+  +  S    CA++    + G  +HSL++K       +  + L+  Y++  + +
Sbjct: 552  V---PSDSSFTSALSACANIGDVEI-GRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVE 607

Query: 153  NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDS--------------------------- 185
            +   VF  IR +D V + ++I G ++N  L D+                           
Sbjct: 608  DGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGH 667

Query: 186  ----LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
                L +F DM +  +      V+  L A   L A++     H      G D  + VG  
Sbjct: 668  GEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNS 727

Query: 242  LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
            LI  Y K G   D   VF+E +   + I WNA++ G AQ G     +++F  +E+ G  P
Sbjct: 728  LITMYFKCG-YEDGFCVFEE-MPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILP 785

Query: 302  DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
            D+ SFL VL A  +AGL  E       M  +Y + P + HYTC++  +GRAG L +AE +
Sbjct: 786  DQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEAL 845

Query: 362  AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
               MP +PD+ +W ALL    IH   ++  ++ +RL  +     + YV+++N+ +  G W
Sbjct: 846  IENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMW 905

Query: 422  DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
            D+VAE+RK+MKD+ + KE G SWI+VK K+H F+ GDR H++ E+IY+ L E        
Sbjct: 906  DKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRAT 965

Query: 482  GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
            GY+P  + +LH+V + +K+  L YHSEKLA+ FG++S  P G  ++I+KNLRIC DCH  
Sbjct: 966  GYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILS-TPNGSPIQIIKNLRICGDCHTF 1024

Query: 542  FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             K++S+V  R+I++RD NR+H F +GSC+CGD W
Sbjct: 1025 MKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 171/363 (47%), Gaps = 20/363 (5%)

Query: 22  HARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
           +AR L     ++++  +N+++T Y     +S +  LF+ +P  N VSW  +IS +   S+
Sbjct: 282 NARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISD 341

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              + ++F+ M R       P+Q     +      L    L G SL  +++K        
Sbjct: 342 YWEAWDVFVKMCRTVAR---PDQSIFVVVLSAITGLDDLELIG-SLRPIAIKTGYEGDVV 397

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GSA+++ Y+R  S D A   F+ + ER+   +  MI  FAQ  RL D++ ++  +    
Sbjct: 398 VGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQT 457

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V +     +  + A A++  +++ R+I        L+ NV+    +I GY + G++ +A+
Sbjct: 458 VATK----TAMMTAYAQVGRIQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEAK 509

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F + + V NS +W AM+AG+ Q  +    LEL   L   G  P + SF + L+A  N 
Sbjct: 510 DLF-QKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANI 568

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G   E  + I  + ++   +        LIS   + G +ED   +   +  + D   W +
Sbjct: 569 GDV-EIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK-DTVSWNS 626

Query: 377 LLS 379
           L+S
Sbjct: 627 LIS 629



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 128/252 (50%), Gaps = 13/252 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSML 88
           D   +N+LI+  S++ +L  +  +F  +P  ++VSWTA+ISA+    +  ++L++FL ML
Sbjct: 620 DTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDML 679

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                   PNQ T+ SL   C +L  A   G   H+L  KL      F G++L+  Y + 
Sbjct: 680 AR---GIKPNQLTVTSLLSACGNLG-AIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKC 735

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              D    VF+E+ E D++ + A++VG AQN    +++ +F  M    +        G L
Sbjct: 736 GYEDGF-CVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVL 794

Query: 209 RAAAELAAMEQCRVIHGHAVVS--GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            A +    +++    H +++    G+   V   T ++D  G+AG +S+A  +  EN+ V 
Sbjct: 795 CACSHAGLVDEGWA-HFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALI-ENMPVK 852

Query: 267 -NSIAWNAMMAG 277
            +S+ W A++  
Sbjct: 853 PDSVIWEALLGA 864



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 173/405 (42%), Gaps = 45/405 (11%)

Query: 25  ALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNI 83
           A+K+  + D  + + ++  Y+++  L  ++  F  +P  N  SWT +I+A +      + 
Sbjct: 387 AIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDA 446

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
                R P       ++T+A+  KT    ++A +  +    L     L+      +A++ 
Sbjct: 447 IQLYERVP-------EQTVAT--KTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIA 497

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y++      AK +F ++  ++   + AMI GF QN    ++L +  ++  S    +   
Sbjct: 498 GYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSS 557

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
            + AL A A +  +E  RVIH  A+ +G   N  V  GLI  Y K G V D   VF   +
Sbjct: 558 FTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVF-RTI 616

Query: 264 SVLNSIAWNAMMAG-------------------------------YAQQGDQSTVLELFH 292
            V ++++WN++++G                               Y Q G     L+LF 
Sbjct: 617 RVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFL 676

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
            +  RG  P++ +  ++L+A  N G     E++   +  +   +  L     LI+   + 
Sbjct: 677 DMLARGIKPNQLTVTSLLSACGNLGAIKLGEQF-HALIFKLGFDTFLFVGNSLITMYFKC 735

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           G  ED   +   MP E D   W A+L   A +G    A K+ +++
Sbjct: 736 G-YEDGFCVFEEMP-EHDLITWNAVLVGCAQNGLGKEAIKIFEQM 778



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 141/294 (47%), Gaps = 22/294 (7%)

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           R    + A++VF+E+ +RDVV + +MI G++QN ++ ++  +F     + VG  +   + 
Sbjct: 183 RLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF----DAFVGKNIRTWTI 238

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L   A+   +E+ R +      S  +RNV+    +I GY + G + +AR++FDE +   
Sbjct: 239 LLTGYAKEGRIEEAREVFE----SMTERNVVSWNAMISGYVQNGDLKNARKLFDE-MPEK 293

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N  +WN+++ GY      S   ELF  +  R    +  S++ +++   +  ++   E W 
Sbjct: 294 NVASWNSVVTGYCHCYRMSEARELFDQMPER----NSVSWMVMISGYVH--ISDYWEAWD 347

Query: 327 ERMKV-RYKLEPGLEHYTCLISAMGRAGRLE---DAERIAMAMPFEPDAAVWRALLSFSA 382
             +K+ R    P    +  ++SA+     LE       IA+   +E D  V  A+L+   
Sbjct: 348 VFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYT 407

Query: 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            +G  D+A    + + + N Y   ++  +    +  GR D+  ++ + + ++ V
Sbjct: 408 RNGSLDLAMHFFETMPERNEY---SWTTMIAAFAQCGRLDDAIQLYERVPEQTV 458



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/397 (19%), Positives = 159/397 (40%), Gaps = 90/397 (22%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR + +    R +  +N++I  YS++  +  +  LF+     NI +WT L++ ++ 
Sbjct: 186 RVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAK 245

Query: 77  S---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                 +  +F SM     +S+                                      
Sbjct: 246 EGRIEEAREVFESMTERNVVSW-------------------------------------- 267

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                +A++  Y +     NA+K+FDE+ E++V  + +++ G+    R+ ++  +F  M 
Sbjct: 268 -----NAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMP 322

Query: 194 SSDVGSTMYCVSG-------------------------------ALRAAAELAAMEQCRV 222
             +  S M  +SG                                L A   L  +E    
Sbjct: 323 ERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGS 382

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +   A+ +G + +V+VG+ +++ Y + G +  A   F E +   N  +W  M+A +AQ G
Sbjct: 383 LRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFF-ETMPERNEYSWTTMIAAFAQCG 441

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                ++L+  +  +  A       A++TA    G   ++     R+     L P +  +
Sbjct: 442 RLDDAIQLYERVPEQTVATKT----AMMTAYAQVGRIQKA-----RLIFDEILNPNVVAW 492

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             +I+   + G L++A+ +   MP + ++A W A+++
Sbjct: 493 NAIIAGYTQNGMLKEAKDLFQKMPVK-NSASWAAMIA 528



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 123/262 (46%), Gaps = 17/262 (6%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +++++ YS+    D A+ +FD    +++  +  ++ G+A+  R+ ++  VF  M   +V 
Sbjct: 206 NSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVV 265

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           S    +SG ++       ++  R +         ++NV     ++ GY     +S+AR +
Sbjct: 266 SWNAMISGYVQN----GDLKNARKLFDEMP----EKNVASWNSVVTGYCHCYRMSEAREL 317

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC---N 315
           FD+ +   NS++W  M++GY    D     ++F  +      PD+  F+ VL+A+    +
Sbjct: 318 FDQ-MPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDD 376

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             L G     +  + ++   E  +   + +++A  R G L+ A      MP E +   W 
Sbjct: 377 LELIGS----LRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMP-ERNEYSWT 431

Query: 376 ALLSFSAIHGKADMASKMGKRL 397
            +++  A  G+ D A ++ +R+
Sbjct: 432 TMIAAFAQCGRLDDAIQLYERV 453



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 11/137 (8%)

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           I   G+ G V +ARRVF+E +   + ++WN+M+ GY+Q G       LF     +     
Sbjct: 178 IQELGRLGRVEEARRVFNEMIQ-RDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR-- 234

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
             ++  +LT     G   E+ +  E M  R      +  +  +IS   + G L++A ++ 
Sbjct: 235 --TWTILLTGYAKEGRIEEAREVFESMTER-----NVVSWNAMISGYVQNGDLKNARKLF 287

Query: 363 MAMPFEPDAAVWRALLS 379
             MP E + A W ++++
Sbjct: 288 DEMP-EKNVASWNSVVT 303


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 198/551 (35%), Positives = 298/551 (54%), Gaps = 17/551 (3%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSML 88
           D  +   LI+ +SK   +  +  LF  I  P++VS+ ALIS  S    +  ++  F  +L
Sbjct: 238 DDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELL 297

Query: 89  RHPTLSFLPNQR----TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
                  +  QR    T+  L    +   H  L    +    +K     +P   +AL   
Sbjct: 298 -------VSGQRVSSSTMVGLIPVSSPFGHLHL-ACCIQGFCVKSGTILQPSVSTALTTI 349

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           YSR    D A+++FDE  E+ V  + AMI G+AQ+     ++S+F +M +++       +
Sbjct: 350 YSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTI 409

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           +  L A A+L A+   + +H       L++N+ V T LID Y K G +S+A ++FD   S
Sbjct: 410 TSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLT-S 468

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             N++ WN M+ GY   G     L+LF+ +   GF P   +FL+VL A  +AGL  E ++
Sbjct: 469 EKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDE 528

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
               M  +Y++EP  EHY C++  +GRAG+LE A      MP EP  AVW  LL    IH
Sbjct: 529 IFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIH 588

Query: 385 GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSW 444
              ++A    +RL +++P +   YV+++N+ S    + + A VR+ +K R + K  G + 
Sbjct: 589 KDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTL 648

Query: 445 IEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALW 504
           IEV G  HVF+ GDR H +T  IY KL EL  +   +GY       LH+V + EK     
Sbjct: 649 IEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFN 708

Query: 505 YHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF 564
            HSEKLA+AFGL++  P G  +RI+KNLR+C DCH + K+IS++ ER IVVRD NR+H F
Sbjct: 709 VHSEKLAIAFGLITTEP-GTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHF 767

Query: 565 LNGSCTCGDLW 575
            +G C+CGD W
Sbjct: 768 KDGICSCGDYW 778



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 130/521 (24%), Positives = 217/521 (41%), Gaps = 71/521 (13%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
            HA+ +++  Q D +    L           ++  LF  +P P+I  +  LI   S SP 
Sbjct: 27  THAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPD 86

Query: 79  -LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S++ +  +L++ TLS  P+  T A  F   AS       G+ LH+ ++        F 
Sbjct: 87  ASSISFYTHLLKNTTLS--PDNFTYA--FAISASPDDNL--GMCLHAHAVVDGFDSNLFV 140

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            SALV  Y +F     A+KVFD++ +RD V +  MI G  +N    DS+ VF DM +  V
Sbjct: 141 ASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGV 200

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 V+  L A AE+  ++    I   A+  G   +  V TGLI  + K   V  AR 
Sbjct: 201 RLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARL 260

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL----------EMRGFAPDEYSFL 307
           +F   +   + +++NA+++G++  G+    ++ F  L           M G  P    F 
Sbjct: 261 LFGM-IRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFG 319

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            +  A C  G   +S            L+P +   T L +   R   + D  R       
Sbjct: 320 HLHLACCIQGFCVKSGTI---------LQPSVS--TALTTIYSRLNEI-DLARQLFDESS 367

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDI----NPYDDSAYVIVANVLSGVGRWDE 423
           E   A W A++S  A  G  +MA  + + ++      NP      V + ++LS   +   
Sbjct: 368 EKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNP------VTITSILSACAQLGA 421

Query: 424 VA---EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDI--YTKLAELMEEC 478
           ++    V +++K + + +            ++V  A   M+ +  +I   ++L +L  E 
Sbjct: 422 LSFGKSVHQLIKSKNLEQ-----------NIYVSTALIDMYAKCGNISEASQLFDLTSEK 470

Query: 479 ERLGYVPVWDEM-----LHNVGDREKREALWYHSEKLALAF 514
             +     W+ M     LH  GD    EAL   +E L L F
Sbjct: 471 NTV----TWNTMIFGYGLHGYGD----EALKLFNEMLHLGF 503


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 303/563 (53%), Gaps = 19/563 (3%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA ALK  Q  D+ +  +    YSK+ L   + RLF+ +P  N+  W A IS   N+ L
Sbjct: 80  IHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYIS---NAVL 136

Query: 80  ------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                 +++ F+   R   +   P+  T  +    CA  +     G  LH L ++     
Sbjct: 137 DGRPGKAIDKFIEFRR---VGGEPDLITFCAFLNACAD-ARCLDLGRQLHGLVIRSGFEG 192

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + ++  Y + +  + A+ VF+ +  R+ V +  M+    QN     +  VF   R
Sbjct: 193 DVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGR 252

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              +  T Y VS  + A A ++ +E  R +H  AV + ++ ++ VG+ L+D YGK G + 
Sbjct: 253 KEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIE 312

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY-SFLAVLTA 312
           D  +VF E +   N ++WNAM++GYA QGD    + LF   EM+  A   Y + + VL+A
Sbjct: 313 DCEQVFHE-MPERNLVSWNAMISGYAHQGDVDMAMTLFE--EMQSEAVANYVTLICVLSA 369

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
               G      +  E M+ RY++EPG EHY C+   +GRAG +E A      MP  P  +
Sbjct: 370 CSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTIS 429

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALL+   ++G+ ++       L  ++P D   +V+++N+ +  GRWDE   VRK MK
Sbjct: 430 VWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMK 489

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           D  ++K  G SW+  K KVHVF A D  HER  +I   L +L  E +  GY+P  +  L+
Sbjct: 490 DVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALY 549

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + EK   + YHSEK+ALAFGL++  P G  +RI KNLRIC DCH +FK+IS +V RE
Sbjct: 550 DLEEEEKMTEVGYHSEKIALAFGLIA-LPPGVPIRITKNLRICGDCHSAFKFISGIVGRE 608

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+HRF +  C+C D W
Sbjct: 609 IIVRDNNRFHRFRDSQCSCRDFW 631



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 184/398 (46%), Gaps = 16/398 (4%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL--SLNIFLSMLRHPTLSFLPNQR 100
           YSK +L + +  L    P+  +V+WTALIS    +    S  ++ S +R   +   PN  
Sbjct: 2   YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIK--PNDF 59

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T    FK   +L   F  G  +H+++LKL   +  F G +    YS+      A+++FDE
Sbjct: 60  TFPCAFKASTALCLPFA-GKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDE 118

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           +  R+V  + A I     + R   ++  F + R       +      L A A+   ++  
Sbjct: 119 MPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLG 178

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           R +HG  + SG + +V V  G+ID YGK   V  A  VF+  +   NS++W  M+A   Q
Sbjct: 179 RQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFN-GMGRRNSVSWCTMVAACEQ 237

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPGL 339
             ++     +F +    G    +Y   +V++A   AG++G E  + +  + V+  +E  +
Sbjct: 238 NDEKEKACVVFLMGRKEGIELTDYMVSSVISAY--AGISGLEFGRSVHALAVKACVEGDI 295

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
              + L+   G+ G +ED E++   MP E +   W A++S  A  G  DMA  +     +
Sbjct: 296 FVGSALVDMYGKCGSIEDCEQVFHEMP-ERNLVSWNAMISGYAHQGDVDMAMTL---FEE 351

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVA---EVRKVMKDR 434
           +     + YV +  VLS   R   V    E+ + M+DR
Sbjct: 352 MQSEAVANYVTLICVLSACSRGGAVKLGNEIFESMRDR 389


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 316/558 (56%), Gaps = 6/558 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H  A +S  ++  ++ N L+  Y K      +  +F  + S  +VSW  +I   + +
Sbjct: 266 RSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQN 325

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S   F + L+      +P + T+  +   CA+L      G  +H L  KL L      
Sbjct: 326 GESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGD-LERGWFVHKLLDKLKLDSNVSV 384

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  YS+ +  D A  +F+ + E+  V + AMI+G+AQN  + ++L++F  M+S  +
Sbjct: 385 MNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGI 443

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               + + G + A A+ +   Q + IHG AV + +D NV V T L+D Y K G +  AR+
Sbjct: 444 KLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARK 503

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD  +   + I WNAM+ GY   G     L+LF+ ++     P++ +FL+V++A  ++G
Sbjct: 504 LFDM-MQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSG 562

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              E     + M+  Y LEP ++HY+ ++  +GRAG+L+DA      MP +P  +V  A+
Sbjct: 563 FVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAM 622

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    IH   ++  K  ++L  ++P +   +V++AN+ +    WD+VA+VR  M+D+ + 
Sbjct: 623 LGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLH 682

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K  G SW+E++ ++H F +G   H  ++ IY  L  L +E +  GYVP  D  +H+V + 
Sbjct: 683 KTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDS-IHDVEED 741

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            K++ L  HSE+LA+AFGL++ +P G TL I KNLR+C DCH++ KYIS V  REI+VRD
Sbjct: 742 VKKQLLSSHSERLAIAFGLLNTSP-GTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRD 800

Query: 558 VNRYHRFLNGSCTCGDLW 575
           + R+H F NGSC+CGD W
Sbjct: 801 LRRFHHFKNGSCSCGDYW 818



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 154/350 (44%), Gaps = 11/350 (3%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPL--SLNIFLSMLRHPTLSF 95
           +I+ + K    S + R+F H+     V +  ++  ++ NS L  +L  FL M+       
Sbjct: 85  VISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLV 144

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           + +   L  L      L      G  +H L +        F  +A++  Y++ R  DNA 
Sbjct: 145 VGDYACLLQLCGENLDLKK----GREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAY 200

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           K+F+ ++ +D+V +  ++ G+AQN     +L +   M+ +        +   L A A++ 
Sbjct: 201 KMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMK 260

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+   R IHG+A  SG +  V V   L+D Y K G    AR VF + +     ++WN M+
Sbjct: 261 ALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVF-KGMRSKTVVSWNTMI 319

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
            G AQ G+       F  +   G  P   + + VL A  N G   E   ++ ++  + KL
Sbjct: 320 DGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDL-ERGWFVHKLLDKLKL 378

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +  +     LIS   +  R++ A  I   +  E     W A++   A +G
Sbjct: 379 DSNVSVMNSLISMYSKCKRVDIAASIFNNL--EKTNVTWNAMILGYAQNG 426



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 109/227 (48%), Gaps = 15/227 (6%)

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           RHP++  L N  +   L++    +              +K   +++    + ++  + +F
Sbjct: 47  RHPSVVLLENCTSKKELYQILPFI--------------IKNGFYNEHLFQTKVISLFCKF 92

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
            S   A +VF+ +  +  V Y  M+ G+A+NS L D+L  F  M   +V   +   +  L
Sbjct: 93  GSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLL 152

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +   E   +++ R IHG  + +G + N+ V T ++  Y K   + +A ++F E +   + 
Sbjct: 153 QLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMF-ERMQHKDL 211

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           ++W  ++AGYAQ G     L+L   ++  G  PD  + +++L A+ +
Sbjct: 212 VSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVAD 258


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/578 (33%), Positives = 315/578 (54%), Gaps = 40/578 (6%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNSP-LSLNIFLSMLR 89
           +S+ NNLI  Y K  L+  +L LFN +P  + +SW ++++A+  +N P L+L++F +M +
Sbjct: 38  KSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFK 97

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
              L   P+    A L K CA L  A   G  +H+  +   + D     S+LV  Y++  
Sbjct: 98  QDGLQ--PDHYVFACLVKACAILG-AMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCG 154

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
            PD  + VFD I  ++ + + AMI G+AQ+ R +D++ +F  M   ++ S    +SG ++
Sbjct: 155 LPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQ 214

Query: 210 --------------------------------AAAELAAMEQCRVIHGHAVVSGLDRNVI 237
                                           A+A LA +   + IH   ++ G + ++ 
Sbjct: 215 SGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLF 274

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           V   L+D Y K   V  A+++F   +   + ++W +++ G AQ G     L L++ +   
Sbjct: 275 VSNALVDMYAKCSDVLAAKKIFGRMVQ-RDIVSWTSIIVGTAQHGLAEEALSLYNRMLST 333

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  P+E +F+ ++ A  + GL  +   +   M   Y + P L+HYTCL+  + R+G LE+
Sbjct: 334 GLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEE 393

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           AE +  AMPF+PD A W ALLS    H    +  ++   L+ + P D S Y++++N+ + 
Sbjct: 394 AENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYAS 453

Query: 418 VGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEE 477
              W+ V++VR++M    V+KE G S I +  +  VFLAG+  H   E+I+  L EL  E
Sbjct: 454 AAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAE 513

Query: 478 CERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRD 537
            ++ GY+P    +LH++  +EK   L++HSE+LA+A+GL+ G P G  L IVKNLR+C D
Sbjct: 514 MKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIP-GMVLHIVKNLRVCGD 572

Query: 538 CHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           CH   K+IS +V+REIVVRD NRYH F +G C+C + W
Sbjct: 573 CHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 103/201 (51%), Gaps = 6/201 (2%)

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G  LH   +K  +       + L++ Y +     +A  +F+++  RD + + +++    
Sbjct: 21  IGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANN 80

Query: 178 QNSRLVDSLSVFADMRSSD-VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           Q +    +LS+F  M   D +    Y  +  ++A A L AM+Q + +H   +VS +  + 
Sbjct: 81  QANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDD 140

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
           +V + L+D Y K G+    R VFD ++S  NSI+W AM++GYAQ G +   ++LF  + +
Sbjct: 141 VVKSSLVDMYAKCGLPDIGRVVFD-SISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPV 199

Query: 297 RGFAPDEYSFLAVLTALCNAG 317
           +       S+ A+++ L  +G
Sbjct: 200 KNL----LSWTALISGLVQSG 216



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 153/362 (42%), Gaps = 42/362 (11%)

Query: 21  VHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA  + S  +D  +  ++L+  Y+K  L      +F+ I S N +SWTA+IS ++ S  
Sbjct: 127 VHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGR 186

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF--------------------- 118
            L+      + P  + L     ++ L ++   +   +LF                     
Sbjct: 187 KLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIG 246

Query: 119 ----------GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
                     G  +H L + L      F  +ALV  Y++      AKK+F  + +RD+V 
Sbjct: 247 ASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVS 306

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           + ++IVG AQ+    ++LS++  M S+ +        G + A + +  + + R      +
Sbjct: 307 WTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMI 366

Query: 229 VS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
              G++ ++   T L+D   ++G + +A  +        +   W A+++      +    
Sbjct: 367 KDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIG 426

Query: 288 LELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM--KVRYKLEPGLEHYTC 344
           + +  HLL ++   P  Y  L+ + A   +    ES   + R+   +  K EPG   Y+C
Sbjct: 427 IRVADHLLSLKPEDPSTYILLSNIYA---SAAMWESVSKVRRLMAAMEVKKEPG---YSC 480

Query: 345 LI 346
           ++
Sbjct: 481 IV 482



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 4/191 (2%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L+A A   +    + +H H + +G+D+   +   LI+ YGK G++ DA  +F++ L   +
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQ-LPHRD 68

Query: 268 SIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
            I+W +++    Q       L +F  + +  G  PD Y F A L   C    A +  K +
Sbjct: 69  PISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVF-ACLVKACAILGAMKQGKQV 127

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
               +   +       + L+    + G L D  R+        ++  W A++S  A  G+
Sbjct: 128 HATFIVSPVSDDDVVKSSLVDMYAKCG-LPDIGRVVFDSISSKNSISWTAMISGYAQSGR 186

Query: 387 ADMASKMGKRL 397
              A ++ +++
Sbjct: 187 KLDAIQLFQKM 197


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/482 (39%), Positives = 277/482 (57%), Gaps = 7/482 (1%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P     ASL ++C +   A   G  LH+              + LV+ Y    S  +A+ 
Sbjct: 73  PTYSNYASLLQSCIA-RKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARL 131

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +FD I + ++  +  +I G+A N     ++ ++  M    +    +     L+A A L+A
Sbjct: 132 LFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSA 191

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL--SVLNSIAWNAM 274
           +E  R IH H V +G +++V VG  LID Y K G V  AR VFD+ L    +  ++WNAM
Sbjct: 192 IEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAM 251

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           + GYA  G  +  L+LF   EM   A PD  +F+ VL+A  + GL  E   + E M   Y
Sbjct: 252 ITGYAMHGHATEALDLFE--EMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDY 309

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           K++P ++HYTC++  +G +GRL++A  + M M   PD+ VW ALL+   IH   ++    
Sbjct: 310 KIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIA 369

Query: 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHV 453
            +RLI++ P D   YVI++N+ +  G+W+ VA++RK+M DRR++K    SWIEVK KVH 
Sbjct: 370 LERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHA 429

Query: 454 FLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALA 513
           FL+GD  H  +++IY++L  +    +  GY P    + H+V D EK   +  HSE+LA+A
Sbjct: 430 FLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIA 489

Query: 514 FGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
           FGL+S  P G  L I KNLRIC DCH + K+IS++ EREI VRDVNRYH F +G C+CGD
Sbjct: 490 FGLIS-TPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGD 548

Query: 574 LW 575
            W
Sbjct: 549 YW 550



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 12/251 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPL--SLNIFLSML 88
           D  I   L+  Y   + LS +  LF+ IP  NI  W  LI  ++ N P   ++ ++  M 
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMF 168

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
            +     +P+  T   + K CA+LS A   G  +H   ++       F G+AL+  Y++ 
Sbjct: 169 DY---GLVPDNFTFPFVLKACAALS-AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKC 224

Query: 149 RSPDNAKKVFDEIRERD---VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205
               +A++VFD+I  RD   VV + AMI G+A +    ++L +F +M        +  V 
Sbjct: 225 GCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFV- 283

Query: 206 GALRAAAELAAMEQCRVIHGHAVVS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           G L A +    +E+  +     +    +D  V   T ++D  G +G + +A  +  +   
Sbjct: 284 GVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKV 343

Query: 265 VLNSIAWNAMM 275
           + +S  W A++
Sbjct: 344 LPDSGVWGALL 354


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/564 (35%), Positives = 307/564 (54%), Gaps = 41/564 (7%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPL----SLNIFLSMLRHPTLSFLPNQRTLAS 104
           LSY+ +LF+ IP P++  +  +I AH+  P     S+ IFLSM+R     FLPN+ T   
Sbjct: 65  LSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVR--VSGFLPNRYTFVF 122

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV------- 157
           +FK C +     L G  +   ++K+ L    F  +A++  Y+ +   D A++V       
Sbjct: 123 VFKACGN-GLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQ 181

Query: 158 ------------------------FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                                   FDE+ ERDVV +  +I G+ Q     ++L +F +M 
Sbjct: 182 DLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEML 241

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
            +      + ++ AL A A L A++Q R IH +   S +  N  +   L+D Y K G + 
Sbjct: 242 QTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEID 301

Query: 254 DARRVF-DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            A +VF DE    L    WNAM+ GYA  G     ++LF  +++   +P++ +F+A+L A
Sbjct: 302 FAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNA 361

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +  L  E   + + M   Y +EP +EHY C++  +GR+G L++AE     MP  PDA 
Sbjct: 362 CSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDAT 421

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W ALL    IH   +   ++GK + +++      +V++AN+ S  G+WDE   VR+ ++
Sbjct: 422 IWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIE 481

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
               +K  G S IE+ G  H FL GDR H +T+ +Y  L E+  + +  GYVP + E+L 
Sbjct: 482 VSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLL 541

Query: 493 NVGDREKRE-ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           ++ D E +E AL  HSEKLA+AFGL++  P G  +RIVKNLR+C DCHE+ K+IS+V +R
Sbjct: 542 DIDDEEDKETALSKHSEKLAIAFGLIN-TPPGTAIRIVKNLRVCADCHEATKFISKVYKR 600

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD  RYH F +G C+C D W
Sbjct: 601 EIIVRDRIRYHHFKDGFCSCKDYW 624



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 139/332 (41%), Gaps = 49/332 (14%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSAL--VHFYSRFRSPDNAK 155
           NQ  L SL ++C S++   +     H ++  L LH  P   + L  V   S F S   A 
Sbjct: 15  NQLQLFSL-ESCKSMNQ--IKQTHAHLITTGLILH--PITANKLLKVLIASSFGSLSYAH 69

Query: 156 KVFDEIRERDVVCYGAMIVGFAQ-NSRLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAE 213
           ++FD+I + DV  Y  MI   A   +   +S+ +F  M R S      Y      +A   
Sbjct: 70  QLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGN 129

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD------------- 260
              + +   I  HA+  GL+ N+ V   +I  Y   G+V +ARRVFD             
Sbjct: 130 GLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIM 189

Query: 261 -----------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
                            + +S  + ++W  ++AGY Q G     L+LFH +   G  P+E
Sbjct: 190 IGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNE 249

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI-- 361
           ++  + L A  N  +A +  +WI     + +++        L+    + G ++ A ++  
Sbjct: 250 FTLASALAACANL-VALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFH 308

Query: 362 ---AMAMPFEPDAAVWRALLSFSAIHGKADMA 390
               + +   P    W A++   A+HGK+  A
Sbjct: 309 DEYGLKLKVWP----WNAMIGGYAMHGKSKEA 336



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 12/262 (4%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR +     D+ +Y  N +I  Y  S  +  +  +F+ +   ++VSWT +I+ +      
Sbjct: 171 ARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCF 230

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L++F  ML+       PN+ TLAS    CA+L  A   G  +H    K  +      
Sbjct: 231 KEALDLFHEMLQTGP---PPNEFTLASALAACANLV-ALDQGRWIHVYIDKSEIKMNERL 286

Query: 138 GSALVHFYSRFRSPDNAKKVF-DEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            ++L+  Y++    D A KVF DE   +  V  + AMI G+A + +  +++ +F  M+  
Sbjct: 287 LASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVE 346

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            V          L A +    +E+ R      A   G++  +     ++D  G++G++ +
Sbjct: 347 KVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKE 406

Query: 255 ARRVFDENLSVLNSIAWNAMMA 276
           A           ++  W A++ 
Sbjct: 407 AEETVFNMPMAPDATIWGALLG 428


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/636 (31%), Positives = 324/636 (50%), Gaps = 70/636 (11%)

Query: 5   LNQQPQPQ----------NTSTDPRIVHARALKSSQADRSIYNNLITNYS--KSNLLSYS 52
            N  PQP            T  D + +HA  +K+ Q    +    +  +    S  + Y+
Sbjct: 12  FNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYA 71

Query: 53  LRLFNHIPSPNIVSWTALIS--AHSN----SPLSLNIFLSMLRHPTLSFLPNQRTLASLF 106
             +F  +P PN   W  ++   A +N       +L +F +ML    +   PN+ T  S+ 
Sbjct: 72  RAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVK--PNRFTFPSVL 129

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS-------------------- 146
           K CA  S     G  +H L +K   H+  F  S LV  Y                     
Sbjct: 130 KACARASR-LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFD 188

Query: 147 ---------------------------RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
                                      R     +AK +FDE+ +R VV +  MI G+AQN
Sbjct: 189 GSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQN 248

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
              ++++++F +M+SS++      +   L A A + A+E  + IH +A  + ++ + ++G
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLG 308

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           + L+D Y K G + +A +VF E L   N+I W+A++  +A  G     +  FHL+   G 
Sbjct: 309 SALVDMYSKCGSIDEALQVF-ETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGV 367

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
            P++ +++ +L+A  +AGL  E   +   M     L+P +EHY C++  +GRAG LE+AE
Sbjct: 368 TPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAE 427

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419
            +   MP EPD  +W+ALL    +H    M  ++ + L+++ P+D  +YV ++N+ + +G
Sbjct: 428 ELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLG 487

Query: 420 RWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE 479
            W+ VA VR  MK   +RK+ G SWIE+ G +H FL  D  H + ++I   L E+  +  
Sbjct: 488 NWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLR 547

Query: 480 RLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCH 539
             GY P   E+  N  ++E+  AL YHSEK+A+AFGL+S AP+   L+IVKNLRIC DCH
Sbjct: 548 SNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQ-HPLKIVKNLRICEDCH 606

Query: 540 ESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            S K IS + +R+I+VRD  R+H+F +GSC+C D W
Sbjct: 607 ASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 314/561 (55%), Gaps = 12/561 (2%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA----HS 75
           VHA  + S     RS+   L+     +  +SY+ ++F  +P+P+   +T+LI +    H+
Sbjct: 31  VHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHN 90

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            S  SL  +  M+     +  P+  T  S+ K+CA LS A   G  +H   L        
Sbjct: 91  FSIYSLYFYSRMVLS---NVSPSNYTFTSVIKSCADLS-ALKHGRVVHGHVLVHGFGLDV 146

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           +  +ALV  Y +     NA+KVFD+IRER +V + +MI G+ QN    +++ +F  M+ +
Sbjct: 147 YVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKET 206

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V          L A A L A      +H + V +GLD NV++GT LI+ Y + G VS A
Sbjct: 207 GVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKA 266

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R VFD ++   N +AW AM++GY   G  S  +ELFH +   G  P+  +F+AVL+A  +
Sbjct: 267 REVFD-SMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAH 325

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER-IAMAMPFEPDAAVW 374
           AGL  E  +    ++  Y L PG+EH  CL+  +GRAG L++A   I   +P  P  A+ 
Sbjct: 326 AGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAIL 385

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            A+L    +H   D+ +++ + L+   P + + YVI++N+ +  GR D+V  VR  M  +
Sbjct: 386 TAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRK 445

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++K+ G S +EV  K ++F  GD+ H  T  IY  L ELM +C   GYVPV D ++H +
Sbjct: 446 CLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHEL 505

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + E+  AL YHSEKLA+AFGL+  +  G  +RIVKNLR+C DCH + K+IS +  REI+
Sbjct: 506 EEEEREYALRYHSEKLAIAFGLLKTS-HGTPIRIVKNLRMCEDCHSAIKFISAISSREII 564

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD  R+H F  GSC+C D W
Sbjct: 565 VRDKLRFHHFKVGSCSCLDYW 585


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 302/559 (54%), Gaps = 10/559 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VHA+   +    D  + N L+   +K   L  +  LFN +   + VSW+ +I     + +
Sbjct: 22  VHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGD 81

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
                  F  ++R  +    P+  +L  + K C   +   + G  +HS  LK  LH   F
Sbjct: 82  YERCFQTFRELIRAGSK---PDNFSLPFVIKACRD-TMGLIMGRLIHSTVLKNGLHLDNF 137

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             S LV  Y++    DNAK++FD + ++D+V    MI G+A+  +  +S  +F  MR   
Sbjct: 138 VCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDG 197

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                  +   + A A+L AM + R++H +        +V +GT +ID Y K G +  +R
Sbjct: 198 FVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSR 257

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +FD  +   N I+W+AM+  Y   G     LELFH++   G  P+  +F+++L A  +A
Sbjct: 258 EIFDR-MEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHA 316

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  +  +    M V Y + P ++HYTC++  +GRAGRL+ A R+   M  E D  +W A
Sbjct: 317 GLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCA 376

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            L    IH + D+A K  K L+ +   +   Y++++N+ +  GRW +VA++R +M  RR+
Sbjct: 377 FLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRL 436

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G +WIEV   ++ F AGD  H R+ +IY  L  L ++ E  GYVP  + +LH+V +
Sbjct: 437 KKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDE 496

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K   L  HSEKLA+AFGL++  P G  +RI KNLR+C DCH   K +S + +R+I+VR
Sbjct: 497 EVKLGILHAHSEKLAIAFGLIA-TPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVR 555

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F  G C+CGD W
Sbjct: 556 DANRFHHFKEGICSCGDYW 574


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 191/567 (33%), Positives = 311/567 (54%), Gaps = 35/567 (6%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N +IT Y ++ ++  +  LFN +P  N +SW  +I+ ++ +  S    +S+        
Sbjct: 355 WNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGM 414

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           LP+  +L S F  C+++  A   G  +HSL++K       +  +AL+  Y ++RS  + +
Sbjct: 415 LPSLSSLTSSFFACSNI-EALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVR 473

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA----- 210
           ++FD +  +D V Y + +    QN+   ++  VF +M S DV S    +S   +A     
Sbjct: 474 QIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNE 533

Query: 211 --------------------------AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
                                     +  L A +  + IH  A+  G+D  ++V   L+ 
Sbjct: 534 AVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVS 593

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K    +D+ +VFD ++   +   WN ++ GYAQ G     + ++ L+   G  P+E 
Sbjct: 594 MYFKCS-SADSLKVFD-SMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEV 651

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F+ +L A  ++GL  E  ++ + M   Y L P LEHY C++  +GRAG ++ AE     
Sbjct: 652 TFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYD 711

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           MP EPD+ +W ALL    IH   ++  +  ++L  I P +   YV+++N+ S  G WDEV
Sbjct: 712 MPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEV 771

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
           A+VRK+MK+R V K+ G SW+++K K+H F+ GD  HE+ ++IY  L EL    +  GYV
Sbjct: 772 AKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYV 831

Query: 485 PVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKY 544
           P  D +LH++ + +K  +L YHSEKLA+A+GL+   P+G  ++I+KNLRIC DCH   K+
Sbjct: 832 PDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLV-TPKGMPIQIMKNLRICGDCHTFIKF 890

Query: 545 ISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +S V +REI VRD NR+H F NGSC+C
Sbjct: 891 VSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 123/256 (48%), Gaps = 21/256 (8%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D   YN+ ++   ++NL   +  +FN++PSP++VSWT +ISA + +     ++ IF SML
Sbjct: 483 DTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSML 542

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                  LPN   L  L     +L  A   G  +H++++KL +       +ALV  Y + 
Sbjct: 543 HERE---LPNPPILTILLGLSGNLG-APQLGQQIHTIAIKLGMDSGLVVANALVSMYFKC 598

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
            S D+  KVFD + ERD+  +  +I G+AQ+    +++ ++  M S+ V        G L
Sbjct: 599 SSADSL-KVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLL 657

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY-------GKAGIVSDARRVFDE 261
            A +    +++     GH     +  +  + T L++ Y       G+AG V  A     +
Sbjct: 658 HACSHSGLVDE-----GHQFFKSMSSDYGL-TPLLEHYACMVDLLGRAGDVQGAEHFIYD 711

Query: 262 NLSVLNSIAWNAMMAG 277
                +S+ W+A++  
Sbjct: 712 MPIEPDSVIWSALLGA 727



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 166/420 (39%), Gaps = 60/420 (14%)

Query: 20  IVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           I  AR L  +   R +  +N ++T Y  S L+  +  LF  +P  N VSWT +IS +   
Sbjct: 142 ITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLI 201

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                + ++F +ML        P Q  L S+      L    +   S+H L  K      
Sbjct: 202 EQHGRAWDMFRTML---CEGMTPEQPNLVSVLSAVRHLGKPGILE-SIHVLVHKTGFERD 257

Query: 135 PFCGSALVHFYSR-FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
              G+A+++ Y++     D+A K F+ +  R+   +  +I   +Q  R+ D+ +V+    
Sbjct: 258 VVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDP 317

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              V S    ++G  R      A      IH        + NV+    +I GY +  +V 
Sbjct: 318 LKSVPSRTSMLTGLARYGRIDDAKILFDQIH--------EPNVVSWNAMITGYMQNEMVD 369

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-------------- 299
           +A  +F+  +   N+I+W  M+AGYA+ G     L     L  +G               
Sbjct: 370 EAEDLFNR-MPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFAC 428

Query: 300 -------APDEYSFLAVLTA------LCNAGLA--------GESEKWIERMKVRYKLEPG 338
                     +   LAV         +CNA +         G   +  +RM V+  +   
Sbjct: 429 SNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVS-- 486

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
              Y   +SA+ +    ++A  +   MP  PD   W  ++S  A   + + A ++ + ++
Sbjct: 487 ---YNSFMSALVQNNLFDEARDVFNNMP-SPDVVSWTTIISACAQADQGNEAVEIFRSML 542



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 126/323 (39%), Gaps = 81/323 (25%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           SA +    R      A++VFD +  RD++ + +MI               FA        
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMI---------------FA-------- 73

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
              YC +G   A   LA           A+  G   N+  GT L+ GY +AG V DARRV
Sbjct: 74  ---YCNNGMPDAGRSLA----------DAISGG---NLRTGTILLSGYARAGRVRDARRV 117

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD  + V N++AWNAM+  Y Q GD +   +LF  +  R    D  S+  +LT  C++ L
Sbjct: 118 FD-GMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSR----DVSSWNTMLTGYCHSQL 172

Query: 319 AGESEKWIERMKVR-----------YKL----------------------EPGLEHYTCL 345
             E+    ERM  R           Y L                      +P L      
Sbjct: 173 MEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSA 232

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS-FSAIHGKADMASKMGKRLIDINPYD 404
           +  +G+ G LE    +     FE D  V  A+L+ ++      D A K  + +   N Y 
Sbjct: 233 VRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEY- 291

Query: 405 DSAYVIVANVLSGVGRWDEVAEV 427
              +  +   LS  GR D+   V
Sbjct: 292 --TWSTIIAALSQAGRIDDAFAV 312



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 156/346 (45%), Gaps = 19/346 (5%)

Query: 39  LITNYSKS-NLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLP 97
           ++  Y+K  N+L  +++ F  + + N  +W+ +I+A S +    + F    R P L  +P
Sbjct: 264 ILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDP-LKSVP 322

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           ++ ++ +       +  A +    +H  ++           +A++  Y +    D A+ +
Sbjct: 323 SRTSMLTGLARYGRIDDAKILFDQIHEPNV--------VSWNAMITGYMQNEMVDEAEDL 374

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           F+ +  R+ + +  MI G+A+N R   +L     +    +  ++  ++ +  A + + A+
Sbjct: 375 FNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEAL 434

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
           E  + +H  AV +G   N  V   LI  YGK   +   R++FD  ++V +++++N+ M+ 
Sbjct: 435 ETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDR-MTVKDTVSYNSFMSA 493

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
             Q        ++F+ +     +PD  S+  +++A   A    E+ +    M    +L P
Sbjct: 494 LVQNNLFDEARDVFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHEREL-P 548

Query: 338 GLEHYTCLISAMGRAGRLEDAER---IAMAMPFEPDAAVWRALLSF 380
                T L+   G  G  +  ++   IA+ +  +    V  AL+S 
Sbjct: 549 NPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSM 594



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 120/283 (42%), Gaps = 41/283 (14%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM------ 192
           +A+V  Y +      A+K+FD +  RDV  +  M+ G+  +  + ++ ++F  M      
Sbjct: 130 NAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGV 189

Query: 193 ----------------RSSDVGSTMYC---------VSGALRAAAELAAMEQCRVIHGHA 227
                           R+ D+  TM C         +   L A   L        IH   
Sbjct: 190 SWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLV 249

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
             +G +R+V+VGT +++GY K   + D+   F E ++  N   W+ ++A  +Q G     
Sbjct: 250 HKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDA 309

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
             ++    ++       S  ++LT L   G   +++   +++      EP +  +  +I+
Sbjct: 310 FAVYQRDPLKSVP----SRTSMLTGLARYGRIDDAKILFDQIH-----EPNVVSWNAMIT 360

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
              +   +++AE +   MPF  +   W  +++  A +G+++ A
Sbjct: 361 GYMQNEMVDEAEDLFNRMPFR-NTISWAGMIAGYARNGRSEQA 402



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 121/293 (41%), Gaps = 45/293 (15%)

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+ L+  Y+R     +A++VFD +  R+ V + AM+  + QN  +  +  +F  M S DV
Sbjct: 98  GTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDV 157

Query: 198 GS-----TMYCVSGALRAA-------AELAAMEQCRVIHGHAVVSGLDR----------- 234
            S     T YC S  +  A        E   +    +I G+ ++    R           
Sbjct: 158 SSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCE 217

Query: 235 -------NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ-ST 286
                  N++     +   GK GI+     +  +     + +   A++ GY +  +   +
Sbjct: 218 GMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDS 277

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP--GLEHYTC 344
            ++ F  +  R    +EY++  ++ AL  AG        I+     Y+ +P   +   T 
Sbjct: 278 AVKFFEGMAAR----NEYTWSTIIAALSQAGR-------IDDAFAVYQRDPLKSVPSRTS 326

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           +++ + R GR++DA +I      EP+   W A+++    +   D A  +  R+
Sbjct: 327 MLTGLARYGRIDDA-KILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRM 378


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 205/636 (32%), Positives = 323/636 (50%), Gaps = 70/636 (11%)

Query: 5   LNQQPQPQ----------NTSTDPRIVHARALKSSQADRSIYNNLITNYS--KSNLLSYS 52
           LN  PQP            T  D + +HA  +K+ Q    +    +  +    S  + Y+
Sbjct: 12  LNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYA 71

Query: 53  LRLFNHIPSPNIVSWTAL--ISAHSN----SPLSLNIFLSMLRHPTLSFLPNQRTLASLF 106
             +F  +P PN   W  +  I A +N       +L +F +ML    +   PN+ T  S+ 
Sbjct: 72  RAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVK--PNRFTFPSVL 129

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS-------------------- 146
           K CA  S     G  +H L +K   H+  F  S LV  Y                     
Sbjct: 130 KACARASR-LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFD 188

Query: 147 ---------------------------RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
                                      R     +AK +FDE+  R VV +  MI G+AQN
Sbjct: 189 GSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQN 248

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
              ++++++F +M+SS++      +   L A A + A+E  + IH +A  + ++ + ++G
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG 308

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           + L+D Y K G +  A +VF E L   N+I W+A++  +A  G     +  FHL+   G 
Sbjct: 309 SALVDMYSKCGSIDKALQVF-ETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGV 367

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
            P++ +++ +L+A  +AGL  E   +   M     L+P +EHY C++  +GRAG LE+AE
Sbjct: 368 TPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAE 427

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419
            +   MP EPD  +W+ALL    +H    M  ++ + L+++ P+D  +YV ++N+ + +G
Sbjct: 428 ELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLG 487

Query: 420 RWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE 479
            W+ VA VR  MK   +RK+ G SWIE+ G +H FL  D  H + ++I   L E+  +  
Sbjct: 488 NWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLR 547

Query: 480 RLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCH 539
             GY P   E+  N  ++E+  AL YHSEK+A+AFGL+S AP+   L+IVKNLRIC DCH
Sbjct: 548 SNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQ-HPLKIVKNLRICEDCH 606

Query: 540 ESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            S K IS + +R+I+VRD  R+H+F +GSC+C D W
Sbjct: 607 ASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 313/559 (55%), Gaps = 9/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH + LK+  + D  +   L+  Y++   +S + ++FN +P  ++V W+ +I+    +  
Sbjct: 269 VHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGF 328

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +++IF+ M     +   PN+ TL+S+   CA +      G  LH L +K+      +
Sbjct: 329 CNKAVDIFIRMREGFVV---PNEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDVY 384

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +AL+  Y++    D A K+F E+  ++VV +  +IVG+        +L++F +   + 
Sbjct: 385 VSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQ 444

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V  T    S AL A A LA+ME    +HG A+ +   + V V   LID Y K G +  A+
Sbjct: 445 VSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQ 504

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF+E +  ++  +WNA+++GY+  G     L +F +++     P+  +FL VL+   NA
Sbjct: 505 TVFNE-METIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNA 563

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  + +   E M   + +EP LEHYTC++   GR+G+L+ A  +   +P+EP   +WRA
Sbjct: 564 GLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRA 623

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           +LS S      + A +  + ++ INP D++ YV+++N+ +G  +W  VA +RK MK++ V
Sbjct: 624 MLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGV 683

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE G SWIE +G VH F  G   H   + I   L  L  +  R GYVP  + +L ++ D
Sbjct: 684 KKEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDD 743

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK + LW HSE+LALA+GLV        + I+KNLRIC DCH + K IS +V+R++V+R
Sbjct: 744 EEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIR 803

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D+NR+H F  G C+C D W
Sbjct: 804 DMNRFHHFHAGVCSCDDHW 822



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 163/354 (46%), Gaps = 14/354 (3%)

Query: 12  QNTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           +N S   + +H   LK  S  D    N L+  Y K+     +L LF+ +P  N VS+  L
Sbjct: 62  KNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTL 121

Query: 71  ISAHS-NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
              ++   P+ L   L    H       N     S  K   SL  A +    LHS  +KL
Sbjct: 122 TQGYACQDPVGLYSRLHREGHEL-----NPHVFTSFLKLFVSLDKAEICWW-LHSPIVKL 175

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
                 F G+AL++ YS   S D+A+ VF+ I  +D+V +  ++  + +N    DSL + 
Sbjct: 176 GYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLL 235

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
           + M         Y    AL+A+  L A    + +HG  + +  + +  VG GL+  Y + 
Sbjct: 236 SRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQL 295

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GF-APDEYSFL 307
           G +SDA +VF+E +   + + W+ M+A + Q G  +  +++F  + MR GF  P+E++  
Sbjct: 296 GDMSDAFKVFNE-MPKNDVVPWSFMIARFCQNGFCNKAVDIF--IRMREGFVVPNEFTLS 352

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           ++L        +G  E+ +  + V+   +  +     LI    +  +++ A ++
Sbjct: 353 SILNGCAIGKCSGLGEQ-LHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKL 405


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 188/545 (34%), Positives = 301/545 (55%), Gaps = 3/545 (0%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH 90
           +D  I N L+  YS    L  + ++F+ + + ++VSW  +I A++   L         R 
Sbjct: 170 SDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRM 229

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
              S  PN+ TL ++   CA  S        +H    +  +       SAL+  Y +   
Sbjct: 230 EIASVKPNEITLVNVLTACAR-SRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGC 288

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
              A+ +F+++ E+++ C+  MI G  ++S   ++LS+F +M+ S V      ++  L A
Sbjct: 289 YPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIA 348

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
              L A+E  + +H +     ++ +V +GT L+D Y K G +  A RVF E +   + + 
Sbjct: 349 CTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQE-MPEKDVMT 407

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W A++ G A  G     LELFH ++M    PD  +F+ VL A  +AGL  E   +   M 
Sbjct: 408 WTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMP 467

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            +Y ++P +EHY C++  +GRAGR+ +AE +   MP  PD  V   LLS   IHG   +A
Sbjct: 468 NKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVA 527

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
            +  ++LI+++P +   YV+++N+ S +  W+   ++R++M +R ++K  G S IEV G 
Sbjct: 528 ERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGV 587

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
           VH F+ GD  H ++ +IY  L ++M   +  GYVP   E+L ++ ++EK   L  HSEKL
Sbjct: 588 VHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKL 647

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AFGL+S  P G  +R+VKNLR+C DCH + K+IS V  REI+VRD NR+H F  GSC+
Sbjct: 648 AIAFGLLSTTP-GTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCS 706

Query: 571 CGDLW 575
           C D W
Sbjct: 707 CRDFW 711



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 162/344 (47%), Gaps = 11/344 (3%)

Query: 46  SNLLSYSLRLFNHIPSPNIVSWTALISAHSNS--PLSLNIFLSMLRHPTLSFLPNQRTLA 103
           S  L Y+  +FN IP+P   +  ++I  ++N   P    +F  ++    L   P++ T  
Sbjct: 87  SGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLD--PDRFTFP 144

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           SLFK+C  L      G  LH  S KL      +  + L++ YS      +A+KVFD++  
Sbjct: 145 SLFKSCGVLCE----GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVN 200

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           + VV +  MI  +AQ     +++ +F  M  + V      +   L A A    +E  + +
Sbjct: 201 KSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQV 260

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H +   +G+  + ++ + L+D Y K G    AR +F++ +   N   WN M+ G+ +  D
Sbjct: 261 HKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNK-MPEKNLFCWNIMINGHVEDSD 319

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               L LF+ +++ G   D+ +  ++L A  + G A E  KW+     + K+E  +   T
Sbjct: 320 YEEALSLFNEMQLSGVKGDKVTMASLLIACTHLG-ALELGKWLHVYIEKEKIEVDVALGT 378

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            L+    + G +E A R+   MP E D   W AL+   A+ G+ 
Sbjct: 379 ALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVGLAMCGQG 421


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 191/559 (34%), Positives = 312/559 (55%), Gaps = 12/559 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VH   +KS   ++  + + L+  Y+K   L  +  +   +   ++VSW +L+     H  
Sbjct: 287 VHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGL 346

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F +M      +   +  T  S+   C   S   +   S+H L +K    +   
Sbjct: 347 EEEALRLFKNMHGR---NMKIDDYTFPSVLNCCVVGS---INPKSVHGLIIKTGFENYKL 400

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +ALV  Y++    D A  VF+++ E+DV+ + +++ G+AQN+   +SL +F DMR + 
Sbjct: 401 VSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTG 460

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    + V+  L A AEL  +E  + +H   + SGL  +  V   L+  Y K G + DA 
Sbjct: 461 VNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDAD 520

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F  ++ V + I W A++ GYAQ G     L+ +  +   G  PD  +F+ +L A  +A
Sbjct: 521 AIF-VSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHA 579

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E  K+ ++M   Y ++PG EHY C+I   GR+G+L++A+++   M  +PDA VW++
Sbjct: 580 GLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKS 639

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LLS   +H   ++A +    L ++ P +   YV+++N+ S   +W++VA++RK+MK + +
Sbjct: 640 LLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGI 699

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            KE G SW+E+  +V+ F++ DR H R  +IYTK+ E++   +  GYVP     LH++  
Sbjct: 700 VKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDK 759

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K   L YHSEKLA+AFGL++ AP    +RI KNLR+C DCH + KYISRV  R I++R
Sbjct: 760 EGKEVGLAYHSEKLAVAFGLLA-APPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILR 818

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D N +H F  G C+CGD W
Sbjct: 819 DSNCFHHFREGECSCGDYW 837



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 167/372 (44%), Gaps = 9/372 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFN--HIPSPNIVSWTALISAHS 75
            ++H   +K+  + +  +   L+  Y+K   +S +  LF        N V WTA+++ ++
Sbjct: 182 EMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYA 241

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +                    NQ T  ++   C+S+  A  FG  +H   +K       
Sbjct: 242 QNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVL-ARCFGEQVHGFIVKSGFGSNV 300

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           +  SALV  Y++     NAK + + + + DVV + +++VGF ++    ++L +F +M   
Sbjct: 301 YVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGR 360

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           ++    Y     L     +      + +HG  + +G +   +V   L+D Y K G +  A
Sbjct: 361 NMKIDDYTFPSVLNCC--VVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCA 418

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             VF++ L   + I+W +++ GYAQ       L++F  + + G  PD++   ++L+A   
Sbjct: 419 YTVFEKMLEK-DVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAE 477

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             L  E  K +    ++  L      Y  L++   + G L+DA+ I ++M  + D   W 
Sbjct: 478 LTLL-EFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWT 535

Query: 376 ALLSFSAIHGKA 387
           A++   A +GK 
Sbjct: 536 AIIVGYAQNGKG 547



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 185/443 (41%), Gaps = 64/443 (14%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R +H     S +   SIY  N L+   SKS  ++ + +LF+ +P  +  SW  +IS++ N
Sbjct: 52  RSIHTTTAASYE---SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVN 108

Query: 77  ----------------------------------SPLSLNIFLSMLRHPTLSFLPNQRTL 102
                                                + ++F SM       +  +Q TL
Sbjct: 109 VGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLE---GWKASQFTL 165

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD--E 160
            S+ + C+SL      G  +H   +K       F  + LV  Y++ +    A+ +F   E
Sbjct: 166 GSVLRVCSSLG-LIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLE 224

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
              ++ V + AM+ G+AQN     ++  F  M +  V    Y     L A + + A    
Sbjct: 225 FDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFG 284

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
             +HG  V SG   NV V + L+D Y K G + +A+ +  E +   + ++WN++M G+ +
Sbjct: 285 EQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNML-ETMEDDDVVSWNSLMVGFVR 343

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G +   L LF  +  R    D+Y+F +VL       +  +S   +        ++ G E
Sbjct: 344 HGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGL-------IIKTGFE 396

Query: 341 HY----TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM--G 394
           +Y      L+    + G ++ A  +   M  E D   W +L++  A +   + + K+   
Sbjct: 397 NYKLVSNALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTGYAQNNSHEESLKIFCD 455

Query: 395 KRLIDINPYDDSAYVIVANVLSG 417
            R+  +NP       IVA++LS 
Sbjct: 456 MRVTGVNP----DQFIVASILSA 474


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 314/563 (55%), Gaps = 18/563 (3%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
           +HAR+LK  S  +  +  +L+T Y++  LL  + R+F+ +P P+ VSWTALI+A+ ++  
Sbjct: 140 LHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGD 199

Query: 79  ------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
                 ++ N F + +R       P+  T   +   CA ++     G ++   + +  + 
Sbjct: 200 LREAVHVARNAFANGMR-------PDSFTAVRVLTACARVAD-LATGETVWRAAEQEGIA 251

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F  +A V  Y +      A++VFD++R++D V +GAM+ G+A N    ++L +F  M
Sbjct: 252 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 311

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           ++  V    Y V+GAL A   L A++  R             N ++GT LID Y K G  
Sbjct: 312 QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 371

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           ++A  VF + +   + I WNAM+ G    G + T   L   +E  G   ++ +F+ +L +
Sbjct: 372 AEAWVVF-QQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCS 430

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL  +  ++   M   Y + P +EHY C++  + RAG L++A ++   MP   +A 
Sbjct: 431 CTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAV 490

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +  ALL    IH  A++A  +  +LI + P++   YV+++N+ S  GRW++ A++R  MK
Sbjct: 491 ILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMK 550

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           ++ V K    SW+E +GKVH F  GD+ H  ++ IY KL EL  E + +GY P  + ++ 
Sbjct: 551 EKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMF 610

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V D EK   L +HSEKLA+AF L+   P G+T+R+ KNLR+C DCH + K ISR+  RE
Sbjct: 611 DVEDEEKEHTLVHHSEKLAIAFNLLVTGP-GETIRVTKNLRVCSDCHTAIKLISRITHRE 669

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+H F +GSC+C D W
Sbjct: 670 IIVRDNNRFHCFRDGSCSCNDYW 692



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 5/283 (1%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+  T     K+ + L H    G  LH+ SLKL  H  P   ++L+  Y+R      A++
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VFDE+     V + A+I  +     L +++ V  +  ++ +    +     L A A +A 
Sbjct: 175 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 234

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +     +   A   G+ ++V V T  +D Y K G ++ AR VFD+ +   +++AW AM+ 
Sbjct: 235 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDK-MRDKDAVAWGAMVG 293

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GYA  G     L+LF  ++  G  PD Y+    L+A    G      + I  +     L+
Sbjct: 294 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 353

Query: 337 -PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
            P L   T LI    + G   +A  +   M  + D  VW A++
Sbjct: 354 NPVLG--TALIDMYAKCGSTAEAWVVFQQMR-KKDIIVWNAMI 393


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/578 (32%), Positives = 312/578 (53%), Gaps = 40/578 (6%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
           S +N +++  +    +  +  LF  +P  +IVSW A+I+ ++ + L   +L +F  ML  
Sbjct: 231 SSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHE 290

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
            +++  P++ T+ S+   CA+L +  + G  +H+  L+  +       +AL+  Y++  S
Sbjct: 291 SSMA--PDEFTITSVLSACANLGNVRI-GKQVHAYILRTEMAYNSQVTNALISTYAKSGS 347

Query: 151 PDNAKKVFDEIRE---------------------------------RDVVCYGAMIVGFA 177
            +NA+++ D+  E                                 RDVV + AMIVG+ 
Sbjct: 348 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 407

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN R  +++ +F  M +       Y ++  L   A LA ++  + IH  A+ S L+++  
Sbjct: 408 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 467

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           V   +I  Y ++G    ARR+FD+      +I W +M+   AQ G     + LF  +   
Sbjct: 468 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 527

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  PD  +++ VL+A  +AG   E +++ +++K  +++ P + HY C++  + RAG   +
Sbjct: 528 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSE 587

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           A+     MP EPDA  W +LLS   +H  A++A    ++L+ I+P +  AY  +ANV S 
Sbjct: 588 AQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSA 647

Query: 418 VGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEE 477
            GRW + A + K  K++ VRKE G SW  ++ K+HVF A D +H + + +Y   A + EE
Sbjct: 648 CGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEE 707

Query: 478 CERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRD 537
            +  G+VP    +LH+V D  K E L  HSEKLA+AFGL+S  P   TLR++KNLR+C D
Sbjct: 708 IKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLIS-TPEKTTLRVMKNLRVCND 766

Query: 538 CHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           CH + K IS+V +REI+VRD  R+H F +G C+C D W
Sbjct: 767 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/454 (22%), Positives = 194/454 (42%), Gaps = 69/454 (15%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N+L++ ++KS  L+ +  +F  +P  + VSWT ++   + +        ++L      F
Sbjct: 101 WNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGF 160

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF------- 148
            P Q TL ++  +CA ++ A   G  +HS  +KL L       +++++ Y +        
Sbjct: 161 TPTQFTLTNVLSSCA-VTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETAT 219

Query: 149 ----RSP--------------------DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
               R P                    D A+ +F+ + +R +V + AMI G+ QN     
Sbjct: 220 TVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAK 279

Query: 185 SLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           +L +F+ M   S +    + ++  L A A L  +   + +H + + + +  N  V   LI
Sbjct: 280 ALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALI 339

Query: 244 DGYGKAGIVSDARRVFDENL-----------------------------SVLNS---IAW 271
             Y K+G V +ARR+ D+++                              V+N+   +AW
Sbjct: 340 STYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAW 399

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            AM+ GY Q G     ++LF  +   G  P+ Y+  AVL+ +C +    +  K I    +
Sbjct: 400 TAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLS-VCASLACLDYGKQIHCRAI 458

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           R  LE        +I+   R+G    A R+   + +  +   W +++   A HG+ + A 
Sbjct: 459 RSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAV 518

Query: 392 KMGKRLI--DINPYDDSAYVIVANVLSGVGRWDE 423
            + + ++   + P D   YV V +  S  G  +E
Sbjct: 519 GLFEEMLRAGVEP-DRITYVGVLSACSHAGFVNE 551



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 43/282 (15%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  ++L+  +++     +A+ VF E+ ERD V +  M+VG  +  R  +++    DM + 
Sbjct: 99  FTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTAD 158

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
               T + ++  L + A   A    R +H   V  GL   V V   +++ YGK G    A
Sbjct: 159 GFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETA 218

Query: 256 RRVFD------------------------------ENLSVLNSIAWNAMMAGYAQQGDQS 285
             VF+                              E++   + ++WNAM+AGY Q G  +
Sbjct: 219 TTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDA 278

Query: 286 TVLELF-HLLEMRGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGLEH 341
             L+LF  +L     APDE++  +VL+A  N G   +  +   +I R ++ Y  +     
Sbjct: 279 KALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQV---- 334

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
              LIS   ++G +E+A RI M    E D  V    +SF+A+
Sbjct: 335 TNALISTYAKSGSVENARRI-MDQSMETDLNV----ISFTAL 371


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/578 (32%), Positives = 312/578 (53%), Gaps = 40/578 (6%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
           S +N +++  +    +  +  LF  +P  +IVSW A+I+ ++ + L   +L +F  ML  
Sbjct: 125 SSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHE 184

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
            +++  P++ T+ S+   CA+L +  + G  +H+  L+  +       +AL+  Y++  S
Sbjct: 185 SSMA--PDEFTITSVLSACANLGNVRI-GKQVHAYILRTEMAYNSQVTNALISTYAKSGS 241

Query: 151 PDNAKKVFDEIRE---------------------------------RDVVCYGAMIVGFA 177
            +NA+++ D+  E                                 RDVV + AMIVG+ 
Sbjct: 242 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 301

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN R  +++ +F  M +       Y ++  L   A LA ++  + IH  A+ S L+++  
Sbjct: 302 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 361

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           V   +I  Y ++G    ARR+FD+      +I W +M+   AQ G     + LF  +   
Sbjct: 362 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 421

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  PD  +++ VL+A  +AG   E +++ +++K  +++ P + HY C++  + RAG   +
Sbjct: 422 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSE 481

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           A+     MP EPDA  W +LLS   +H  A++A    ++L+ I+P +  AY  +ANV S 
Sbjct: 482 AQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSA 541

Query: 418 VGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEE 477
            GRW + A + K  K++ VRKE G SW  ++ K+HVF A D +H + + +Y   A + EE
Sbjct: 542 CGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEE 601

Query: 478 CERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRD 537
            +  G+VP    +LH+V D  K E L  HSEKLA+AFGL+S  P   TLR++KNLR+C D
Sbjct: 602 IKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLIS-TPEKTTLRVMKNLRVCND 660

Query: 538 CHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           CH + K IS+V +REI+VRD  R+H F +G C+C D W
Sbjct: 661 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 188/447 (42%), Gaps = 69/447 (15%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
           ++KS  L+ +  +F  +P  + VSWT ++   + +        ++L      F P Q TL
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF-----------RSP 151
            ++  +CA ++ A   G  +HS  +KL L       +++++ Y +            R P
Sbjct: 62  TNVLSSCA-VTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 152 --------------------DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                               D A+ +F+ + +R +V + AMI G+ QN     +L +F+ 
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 192 M-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           M   S +    + ++  L A A L  +   + +H + + + +  N  V   LI  Y K+G
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 251 IVSDARRVFDENL-----------------------------SVLNS---IAWNAMMAGY 278
            V +ARR+ D+++                              V+N+   +AW AM+ GY
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
            Q G     ++LF  +   G  P+ Y+  AVL+ +C +    +  K I    +R  LE  
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLS-VCASLACLDYGKQIHCRAIRSLLEQS 359

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
                 +I+   R+G    A R+   + +  +   W +++   A HG+ + A  + + ++
Sbjct: 360 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 419

Query: 399 --DINPYDDSAYVIVANVLSGVGRWDE 423
              + P D   YV V +  S  G  +E
Sbjct: 420 RAGVEP-DRITYVGVLSACSHAGFVNE 445


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 200/565 (35%), Positives = 313/565 (55%), Gaps = 36/565 (6%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPL---SLNIFLSML 88
           +N ++T YS++  L ++L LF  +   NI    V+WTA+I+ ++       +L++F  M 
Sbjct: 433 WNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMC 492

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKPFCGS-------A 140
                   PN  TL SL   C S+  A L G   H  ++K  L+ D P  G+        
Sbjct: 493 ---DCGSRPNVVTLVSLLSACVSVG-ALLHGKETHCYAIKFILNLDGPDPGADDLKVING 548

Query: 141 LVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD-- 196
           L+  Y++ +S + A+K+FD +  ++RDVV +  MI G+AQ+    ++L +F+ M   D  
Sbjct: 549 LIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKS 608

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN------VIVGTGLIDGYGKAG 250
           +    + +S AL A A LAA+   R +H + +     RN      + V   LID Y K+G
Sbjct: 609 IKPNDFTLSCALVACARLAALRFGRQVHAYVL-----RNFYGSVMLFVANCLIDMYSKSG 663

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V  A+ VFD N+   N+++W ++M GY   G     L +F  +      PD  +FL VL
Sbjct: 664 DVDTAQIVFD-NMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVL 722

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  ++G+      +  RM   + ++PG EHY C++   GRAGRL +A ++   MP EP 
Sbjct: 723 YACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPT 782

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             VW ALLS   +H   ++      RL+++   +D +Y +++N+ +   RW +VA +R  
Sbjct: 783 PVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYT 842

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK   ++K  G SWI+ +  V  F  GDR H +++ IY  LA+L++  + +GYVP     
Sbjct: 843 MKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFA 902

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           LH+V D EK + L+ HSEKLALA+G+++  PR   +RI KNLRIC DCH +  YIS+++E
Sbjct: 903 LHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAP-IRITKNLRICGDCHSAITYISKIIE 961

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
            EI++RD +R+H F NGSC+C   W
Sbjct: 962 HEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 189/409 (46%), Gaps = 58/409 (14%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFN---HIPSPNIVSWTALISAH---SNSPLSLNIFLSML 88
           + N +++ Y K   L ++  +F+   H    ++VSW +++SA+   S++  +L +F  M 
Sbjct: 296 VCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMT 355

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               +S  P+  +L ++   CASL+ A L G  +H  S++  L D  F G+A+V  Y++ 
Sbjct: 356 TRHLMS--PDVISLVNILPACASLA-ASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKC 412

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM---------------- 192
              + A KVF  ++ +DVV + AM+ G++Q  RL  +LS+F  M                
Sbjct: 413 GKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVI 472

Query: 193 -----------------RSSDVGSTMYCVS--GALRAAAELAAMEQCRVIHGHAV--VSG 231
                            +  D GS    V+    L A   + A+   +  H +A+  +  
Sbjct: 473 TGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILN 532

Query: 232 LD------RNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQ 284
           LD       ++ V  GLID Y K      AR++FD  +    + + W  M+ GYAQ GD 
Sbjct: 533 LDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDA 592

Query: 285 STVLELFH-LLEM-RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR-YKLEPGLEH 341
           +  L+LF  + +M +   P++++    L A C    A    + +    +R +     L  
Sbjct: 593 NNALQLFSGMFKMDKSIKPNDFTLSCALVA-CARLAALRFGRQVHAYVLRNFYGSVMLFV 651

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             CLI    ++G ++ A+ +   MP + +A  W +L++   +HG+ + A
Sbjct: 652 ANCLIDMYSKSGDVDTAQIVFDNMP-QRNAVSWTSLMTGYGMHGRGEDA 699



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 148/301 (49%), Gaps = 12/301 (3%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIP-SPN-IVSWTALI--SAHSNSPLSLNIFLSMLRHPT 92
            NLI  Y  SN  +Y++ L   +P SP+ +  W  LI  + H  SP   ++F    +  +
Sbjct: 195 TNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPR--DVFTLYRQMKS 252

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           L + P+  T   +FK CA+LS +   G SLH+   +       F  +A+V  Y +  +  
Sbjct: 253 LGWTPDHYTFPFVFKACANLS-SLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALR 311

Query: 153 NAKKVFDEIRER---DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST-MYCVSGAL 208
           +A  +FD++  R   D+V + +++  +   S    +L++F  M +  + S  +  +   L
Sbjct: 312 HAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNIL 371

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A A LAA  + R +HG ++ SGL  +V VG  ++D Y K G + +A +VF + +   + 
Sbjct: 372 PACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVF-QRMKFKDV 430

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WNAM+ GY+Q G     L LF  +       D  ++ AV+T     G   E+     +
Sbjct: 431 VSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQ 490

Query: 329 M 329
           M
Sbjct: 491 M 491



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 115/254 (45%), Gaps = 6/254 (2%)

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           D  +++  M+S       Y      +A A L+++     +H     SG   NV V   ++
Sbjct: 242 DVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVV 301

Query: 244 DGYGKAGIVSDARRVFDE--NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-A 300
             YGK G +  A  +FD+  +  + + ++WN++++ Y    D +T L LFH +  R   +
Sbjct: 302 SMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMS 361

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
           PD  S + +L A C +  A    + +    +R  L   +     ++    + G++E+A +
Sbjct: 362 PDVISLVNILPA-CASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANK 420

Query: 361 IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVG 419
           +   M F+ D   W A+++  +  G+ + A  + +R+ + N   D   +  V    +  G
Sbjct: 421 VFQRMKFK-DVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRG 479

Query: 420 RWDEVAEVRKVMKD 433
           +  E  +V + M D
Sbjct: 480 QGCEALDVFRQMCD 493



 Score = 39.3 bits (90), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--- 73
           R VHA  L++      ++  N LI  YSKS  +  +  +F+++P  N VSWT+L++    
Sbjct: 633 RQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGM 692

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           H     +L +F  M + P    +P+  T   +   C+
Sbjct: 693 HGRGEDALRVFDEMRKVP---LVPDGITFLVVLYACS 726


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 187/541 (34%), Positives = 301/541 (55%), Gaps = 13/541 (2%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N +I+ Y++   LS + RLFN  P  ++ +WTA++S +  + +           P  + 
Sbjct: 235 WNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNE 294

Query: 96  LPNQRTLASLFKTCASLSHAFLF-GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
           +     LA   +    +    LF  +   ++S            + ++  Y +      A
Sbjct: 295 ISYNAMLAGYVQYKKMVIAGELFEAMPCRNIS----------SWNTMITGYGQNGGIAQA 344

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           +K+FD + +RD V + A+I G+AQN    ++L++F +M+     S     S AL   A++
Sbjct: 345 RKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADI 404

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           AA+E  + +HG  V +G +    VG  L+  Y K G   +A  VF E +   + ++WN M
Sbjct: 405 AALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVF-EGIEEKDVVSWNTM 463

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           +AGYA+ G     L LF  ++  G  PDE + + VL+A  ++GL     ++   M   Y 
Sbjct: 464 IAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYN 523

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           ++P  +HYTC+I  +GRAGRLE+AE +   MPF+P AA W ALL  S IHG  ++  K  
Sbjct: 524 VKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAA 583

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           + +  + P +   YV+++N+ +  GRW +V ++R  M++  V+K  G SW+EV+ K+H F
Sbjct: 584 EMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTF 643

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
             GD  H   + IY  L EL  +  R GYV     +LH+V + EK   L YHSEKLA+AF
Sbjct: 644 SVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAF 703

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           G+++  P G+ +R++KNLR+C+DCH + K+IS++V R I++RD +R+H F  G C+CGD 
Sbjct: 704 GILT-IPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDY 762

Query: 575 W 575
           W
Sbjct: 763 W 763



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 152/325 (46%), Gaps = 36/325 (11%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRH 90
           S +N +IT Y ++  ++ + +LF+ +P  + VSW A+IS ++ +     +LN+F+ M R 
Sbjct: 326 SSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRD 385

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
              S   N+ T +    TCA ++ A   G  +H   +K       F G+AL+  Y +  S
Sbjct: 386 GESS---NRSTFSCALSTCADIA-ALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGS 441

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            D A  VF+ I E+DVV +  MI G+A++     +L +F  M+ + V      + G L A
Sbjct: 442 TDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSA 501

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVG------TGLIDGYGKAGIVSDARRVFDENLS 264
            +    +++     G      +DR+  V       T +ID  G+AG + +A  +      
Sbjct: 502 CSHSGLIDR-----GTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPF 556

Query: 265 VLNSIAWNAMMA-----GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
              + +W A++      G  + G+++   E+   +E     P       +L+ L  A   
Sbjct: 557 DPGAASWGALLGASRIHGNTELGEKAA--EMVFKME-----PQNSGMYVLLSNLYAA--- 606

Query: 320 GESEKWIERMKVRYKL-EPGLEHYT 343
             S +W++  K+R K+ E G++  T
Sbjct: 607 --SGRWVDVGKMRSKMREAGVQKVT 629



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 177/383 (46%), Gaps = 55/383 (14%)

Query: 62  PNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           P+IV+W   IS+H    +   +L +F SM R  ++S+                  +A + 
Sbjct: 44  PDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSY------------------NAMIS 85

Query: 119 G-LSLHSLSLKLSLHDKP-----FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
           G L     SL   L DK      F  + ++  Y R R    A K+FD + ++DVV + AM
Sbjct: 86  GYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAM 145

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           + G+AQN  + ++  VF  M   +  S     +G L A      +++ R +      S  
Sbjct: 146 LSGYAQNGFVDEAREVFNKMPHRNSISW----NGLLAAYVHNGRLKEARRL----FESQS 197

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
           +  +I    L+ GY K  ++ DAR++FD  + V + I+WN M++GYAQ GD S    LF+
Sbjct: 198 NWELISWNCLMGGYVKRNMLGDARQLFDR-MPVRDVISWNTMISGYAQVGDLSQAKRLFN 256

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
              +R    D +++ A+++     G+  E+ K+ + M V+ ++      Y  +++   + 
Sbjct: 257 ESPIR----DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEIS-----YNAMLAGYVQY 307

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412
            ++  A  +  AMP   + + W  +++    +G    A    ++L D+ P  D   V  A
Sbjct: 308 KKMVIAGELFEAMPCR-NISSWNTMITGYGQNGGIAQA----RKLFDMMPQRDC--VSWA 360

Query: 413 NVLSGV---GRWDEVAEVRKVMK 432
            ++SG    G ++E   +   MK
Sbjct: 361 AIISGYAQNGHYEEALNMFVEMK 383



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 110/273 (40%), Gaps = 34/273 (12%)

Query: 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
           ++ S+ RS ++      + ++ D+V +   I    +N     +L VF  M      S   
Sbjct: 23  YYRSKRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNA 82

Query: 203 CVSGALRAAAELAA------MEQCRVIHGHAVVSGLDRN-----------------VIVG 239
            +SG LR A    A      M +  +   + +++G  RN                 V+  
Sbjct: 83  MISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSW 142

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
             ++ GY + G V +AR VF++ +   NSI+WN ++A Y   G       LF        
Sbjct: 143 NAMLSGYAQNGFVDEAREVFNK-MPHRNSISWNGLLAAYVHNGRLKEARRLFESQS---- 197

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
             +  S+  ++       + G++ +  +RM VR  +      +  +IS   + G L  A+
Sbjct: 198 NWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVIS-----WNTMISGYAQVGDLSQAK 252

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           R+    P   D   W A++S    +G  D A K
Sbjct: 253 RLFNESPIR-DVFTWTAMVSGYVQNGMVDEARK 284


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 304/559 (54%), Gaps = 7/559 (1%)

Query: 21  VHARALKSSQADRSIYNNLI---TNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + A A+KS   D S    LI   T     + +SY+  LF  +  P+IV + ++   +S  
Sbjct: 48  IQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRF 107

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
              L +F   +       LP+  T  SL K CA ++ A   G  LH LS+KL L D  + 
Sbjct: 108 TNPLEVFSLFVEILEDGILPDNYTFPSLLKACA-VAKALEEGRQLHCLSMKLGLDDNVYV 166

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
              L++ Y+     D+A+ VFD I E  VVCY AMI G+A+ +R  ++LS+F +M+   +
Sbjct: 167 CPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYL 226

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 +   L + A L +++  + IH +A      + V V T LID + K G + DA  
Sbjct: 227 KPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVS 286

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F E +   ++ AW+AM+  YA  G     + +F  +      PDE +FL +L A  + G
Sbjct: 287 IF-EKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              E  K+  +M  ++ + P ++HY  ++  +  AG LEDA      +P  P   +WR L
Sbjct: 346 RVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRIL 405

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L+  + H   D+A K+ +R+ +++      YVI++N+ +   +W+ V  +RKVMKDR+  
Sbjct: 406 LAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAV 465

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH-NVGD 496
           K  G S IEV   VH F +GD +   T  ++  L E+++E +  GYVP    ++H N+ D
Sbjct: 466 KVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMND 525

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
           +EK   L YHSEKLA+ FGL++  P G T+R+VKNLR+CRDCH + K IS +  R++V R
Sbjct: 526 QEKEITLRYHSEKLAITFGLLNTPP-GTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXR 584

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           DV R+H F +G C+CGD W
Sbjct: 585 DVQRFHHFEDGKCSCGDFW 603


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 201/626 (32%), Positives = 324/626 (51%), Gaps = 71/626 (11%)

Query: 16  TDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T+ + +H   LK +S AD S+ + L   Y   N +  + RLF+ IP+P+++ W  +I A+
Sbjct: 25  TEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAY 84

Query: 75  S-NSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL----------SHAFLFGL- 120
           + N P   +++++ SML    L   PN+ T   + K C+ L          SHA +FGL 
Sbjct: 85  AWNGPFDGAIDLYHSMLH---LGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLE 141

Query: 121 --------------------------------------------SLHSL-----SLKLSL 131
                                                       SL+ L      L + +
Sbjct: 142 SDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQM 201

Query: 132 HDKPFC--GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
            ++  C   S +V      +    A+K+FD +  R+ V + AMI G+  +  + ++L +F
Sbjct: 202 QEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIF 261

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
             M+ S +   +  + G L A + LAA++     HG+ +V G   + ++   LID Y K 
Sbjct: 262 RMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 321

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +S AR VF+  +   + ++WNAM+ GY   G     L LFH L   G  PD+ +F+ +
Sbjct: 322 GKISFAREVFNR-MDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICL 380

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L++  ++GL  E   W + M   + + P +EH  C++  +GRAG +++A      MPFEP
Sbjct: 381 LSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEP 440

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           D  +W ALLS   IH   ++  ++ K++  + P     +V+++N+ S  GRWD+ A +R 
Sbjct: 441 DVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRI 500

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
             KD  ++K  G SWIE+ G VH F+ GD+ H +   I  KL EL+ E +RLGY      
Sbjct: 501 TQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSF 560

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +  +V + EK + L YHSEKLA+AFG+++    G+ + + KNLR+C DCH + K+++ + 
Sbjct: 561 VFQDVEEEEKEQILLYHSEKLAIAFGILN-LKAGRPILVTKNLRVCGDCHTAIKFMTLIT 619

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
           +REI VRD NR+H F NG+C CGD W
Sbjct: 620 KREITVRDANRFHHFKNGTCNCGDFW 645


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 200/581 (34%), Positives = 301/581 (51%), Gaps = 38/581 (6%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
           + D   +  ++  + +   +  +   F  I     V W A+IS +  S +    F    R
Sbjct: 227 EKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRR 286

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG----SALVHFY 145
             +    P++ T  SL   CA+    FL G S+H   ++L     P       +ALV  Y
Sbjct: 287 MVSKRIPPDEFTFTSLLSACANAGF-FLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLY 345

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL----------------------- 182
           S+      A K+FD +  +DVV +  ++ G+ ++  L                       
Sbjct: 346 SKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVS 405

Query: 183 --------VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
                    D+L +F  MRS DV    Y  +GA+ A  EL A++  + +H H V  G + 
Sbjct: 406 GYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEA 465

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           +   G  L+  Y + G V DAR VF    +V +S++WNAM++   Q G     LELF  +
Sbjct: 466 SNSAGNALLTMYARCGAVKDARLVFLVMPNV-DSVSWNAMISALGQHGHGREALELFDQM 524

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
             +G  PD  SFL +LTA  +AGL  +  ++ E M+  + + PG +HY  LI  +GRAGR
Sbjct: 525 VAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGR 584

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414
           + +A  +   MPFEP  A+W A+LS   I+G  ++ +    +L  + P  D  Y++++N 
Sbjct: 585 IGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNT 644

Query: 415 LSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAEL 474
            S  GRW + A VRK+M+DR V+KE G SWIEV  KVHVFL GD  H    ++Y  L  +
Sbjct: 645 YSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMV 704

Query: 475 MEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRI 534
             +  +LGYVP     L ++   EK   L+ HSE+LA++FGL+   P G T+ ++KNL+I
Sbjct: 705 GAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLK-LPAGATVTVLKNLKI 763

Query: 535 CRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           C DCH +  ++SR V REIVVRDV R+H F +G C+CG+ W
Sbjct: 764 CGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 145/350 (41%), Gaps = 49/350 (14%)

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCY 169
           L H +     L + ++       P   ++LV  Y+      ++   FD +    RD V +
Sbjct: 66  LLHLYTLSPDLATPAVLFRADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLH 125

Query: 170 GAMIVGFAQNSRLVDSLSVFADMRSSD--VGSTMYCVSGALRAAAEL--AAMEQCRVIHG 225
            AMI  FA+ S    ++SVF  + +SD  +    Y  +  L A  ++   A+  C  +H 
Sbjct: 126 NAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHC 185

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKA---GIVSDARRVFDE--------------------- 261
                G    + V   LI  Y K    G+  DAR+V DE                     
Sbjct: 186 AVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGD 245

Query: 262 ---------NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
                     +     + WNAM++GY Q G  +   ELF  +  +   PDE++F ++L+A
Sbjct: 246 VHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSA 305

Query: 313 LCNAG--LAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
             NAG  L G+S      R++  +  E  L     L++   ++G++  A +I  +M  + 
Sbjct: 306 CANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLK- 364

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD--SAYVIVANVLSG 417
           D   W  +LS     G  D A+++ K +    PY    S  V+V+  + G
Sbjct: 365 DVVSWNTILSGYIESGCLDNAARIFKEM----PYKSELSWMVMVSGYVHG 410


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 311/578 (53%), Gaps = 40/578 (6%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
           S +N +++ Y+    +  +L +F ++   +IVSW A+I+ ++ + L   +L  F  ML  
Sbjct: 230 SSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTA 289

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL------------------- 131
            ++   P++ T+ S+   CA+L      G  +HS  L+  +                   
Sbjct: 290 SSME--PDEFTVTSVLSACANL-RMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGS 346

Query: 132 -------HDKPFCG-------SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
                   DK           +AL+  Y +      A++VFD +  RDV+ + AMIVG+ 
Sbjct: 347 VETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYE 406

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN +  +++ +F  M  S      + ++  L A A LA +   + IH  A+ S  +++V 
Sbjct: 407 QNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVS 466

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           V   +I  Y ++G V  ARRVFD+      ++ W +M+   AQ G     + LF  +   
Sbjct: 467 VSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRV 526

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  PD  +++ V +A  +AG   + +++ E+M   + + P + HY C++  + RAG L +
Sbjct: 527 GVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTE 586

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           A      MP  PD  VW +LL+   +   AD+A    ++L+ I+P +  AY  +ANV S 
Sbjct: 587 AHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSA 646

Query: 418 VGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEE 477
            GRW++ A + K+ KD+ V+KE G SW  V+ KVHVF A D +H + + I  K AE+ EE
Sbjct: 647 CGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEE 706

Query: 478 CERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRD 537
            ++ G+VP  + +LH+V D  K E L  HSEKLA+AFGL+S  P   TLRI+KNLR+C D
Sbjct: 707 IKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLIS-TPEKTTLRIMKNLRVCND 765

Query: 538 CHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           CH + K+IS+VV+REI+VRD  R+H F +G C+C D W
Sbjct: 766 CHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/458 (22%), Positives = 193/458 (42%), Gaps = 77/458 (16%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N+L++ Y+KS  L+ +  +F  +P  + VSWT ++   + +    +   + L       
Sbjct: 100 WNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGL 159

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P+Q  L ++  +CA+ + A   G  +HS  +KL L       +++++ Y +    + A+
Sbjct: 160 APSQFMLTNVLSSCAA-TEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETAR 218

Query: 156 KVFDEIR-------------------------------ERDVVCYGAMIVGFAQNSRLVD 184
            VF+ ++                               ER +V + A+I G+ QN     
Sbjct: 219 AVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDM 278

Query: 185 SLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL----------- 232
           +L  F+ M  +S +    + V+  L A A L  ++  + +H + + +G+           
Sbjct: 279 ALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALI 338

Query: 233 ----------------------DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS-- 268
                                 D NVI  T L++GY K G    AR VFD    V+N+  
Sbjct: 339 STYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFD----VMNNRD 394

Query: 269 -IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            IAW AM+ GY Q G     +ELF  +   G  P+ ++  AVL+A  +    G  ++ I 
Sbjct: 395 VIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQ-IH 453

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
              +R   E  +     +I+   R+G +  A R+   + +  +   W +++   A HG  
Sbjct: 454 CRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLG 513

Query: 388 DMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDE 423
           + A  + + +  + + P D   Y+ V +  +  G  D+
Sbjct: 514 EQAIVLFEEMLRVGVKP-DRVTYIGVFSACTHAGFIDK 550



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 138/309 (44%), Gaps = 19/309 (6%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  ++L+  Y++     +A+ VF ++ ERD V +  M+VG  +  R  D++  F DM   
Sbjct: 98  FTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGE 157

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +  + + ++  L + A   A    R +H   +  GL   V V   ++  YGK G    A
Sbjct: 158 GLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETA 217

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R VF E + V +  +WNAM++ Y  QG     L +F  +E R       S+ A++     
Sbjct: 218 RAVF-ERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIV----SWNAIIAGYNQ 272

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISA-----MGRAGRLEDAERIAMAMPFEPD 370
            GL   + K+  RM     +EP     T ++SA     M + G+   +  +   MP+   
Sbjct: 273 NGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYS-- 330

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG---VGRWDEVAEV 427
           + +  AL+S  A  G  + A    +R++D     D   +    +L G   +G   +  EV
Sbjct: 331 SQIMNALISTYAKSGSVETA----RRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREV 386

Query: 428 RKVMKDRRV 436
             VM +R V
Sbjct: 387 FDVMNNRDV 395



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 38/209 (18%)

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI----VSDARRVFDE-NLSVLNSIAWNAMM 275
           R IH HAV +GL  +  +   L+  Y +AG+      +ARR+FD+   +  N+  WN+++
Sbjct: 45  RAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLL 104

Query: 276 AGYAQQGDQSTVLELFHLLEMR-------------------------------GFAPDEY 304
           + YA+ G  +    +F  +  R                               G AP ++
Sbjct: 105 SMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQF 164

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
               VL++ C A  A    + +    ++  L   +     ++   G+ G  E A  +   
Sbjct: 165 MLTNVLSS-CAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 223

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKM 393
           M    +++ W A++S     G+ D+A  M
Sbjct: 224 MKVRSESS-WNAMVSLYTHQGRMDLALSM 251


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 303/547 (55%), Gaps = 10/547 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPLSLNIFLSMLRH 90
           ++ +   L+  Y+ SN L  +  LF+ IP  N+  W  LI  ++ N P    I   +L H
Sbjct: 81  NQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAI---ILYH 137

Query: 91  PTLSF--LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
             L +   P+  TL  + K C++LS A   G S+H   +K       F G+AL+  Y++ 
Sbjct: 138 KMLDYGLRPDNFTLPFVLKACSALS-AIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKC 196

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               +A +VFD+I  RD V + +M+  +AQN    +S+S+  +M ++ V  T   +   +
Sbjct: 197 GCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVI 256

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            ++A++A +   R IHG     G   N  V T LID Y K G V  A  +F E L     
Sbjct: 257 SSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALF-ERLREKRV 315

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WNA++ GYA  G     L+LF  +      PD  +F+ VL A     L  E       
Sbjct: 316 VSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNL 374

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M   Y + P ++HYTC+I  +G  G+L++A  +   M  +PD+ VW ALL+   IHG  +
Sbjct: 375 MVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVE 434

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +A    ++LI++ P D   YVI+AN+ +  G+W+ V ++R+VM D+R++K    SWIEVK
Sbjct: 435 LAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVK 494

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
            KV+ FLAGD  H  ++ IY +L  L       GY P    + H+V + EK   +  HSE
Sbjct: 495 NKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSE 554

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           +LA+AFGL+S +P G  L I KNLRIC DCH + K+IS+++EREI VRDVNRYH F +G 
Sbjct: 555 RLAIAFGLISTSP-GTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGM 613

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 614 CSCGDHW 620



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 165/356 (46%), Gaps = 27/356 (7%)

Query: 78  PLSLNIFLSMLRHPTLS---FLPNQRT---LASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           P S + + S+  H T S   F P   T     SL ++C   S A   G  LH+    L +
Sbjct: 20  PFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCID-SKALNPGKQLHAQFYHLGI 78

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                  + LVH Y+   S  NA+ +FD+I ++++  +  +I G+A N    +++ ++  
Sbjct: 79  AYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHK 138

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M    +    + +   L+A + L+A+ + R IH + + SG +R++ VG  LID Y K G 
Sbjct: 139 MLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGC 198

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           V DA RVFD+ + V +++ WN+M+A YAQ G     + L   +   G  P E + + V++
Sbjct: 199 VMDAGRVFDK-IVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVIS 257

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM---PFE 368
           +  +        + I     R+  +   +  T LI    + G +    ++A+A+     E
Sbjct: 258 SSADVACLPYGRE-IHGFGWRHGFQSNDKVKTALIDMYAKCGSV----KVALALFERLRE 312

Query: 369 PDAAVWRALLSFSAIHGKA----DMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
                W A+++  A+HG A    D+  KM K        D   ++    VL+   R
Sbjct: 313 KRVVSWNAIITGYAMHGLAVGALDLFDKMRKE-------DRPDHITFVGVLAACSR 361


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 316/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H  +L+ S   + + NN  I  Y+K   L ++  +F  + + ++ SW A+I  H+ +
Sbjct: 436 RALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQN 495

Query: 78  --PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             P+ +L+ +  M R   L  LP+  ++ SL   C  L     +G  +H   L+  L   
Sbjct: 496 GDPIKALDFYFEMTR---LGILPDDFSIVSLLLACGRLG-LLQYGKEIHGFVLRNGLEMN 551

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F   +L+  Y     P   +  F+ + +++ VC+ AM+ G++QN    ++LS+F  M S
Sbjct: 552 SFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLS 611

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +      ++  L A ++L+A+   + +H  A+ + L  +  V   L+D Y K+G +  
Sbjct: 612 DGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGH 671

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           ++R+F+  L+     +WN M+ G+   G  +  +ELF  ++     PD ++FL VL A C
Sbjct: 672 SQRIFNR-LNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACC 730

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E   ++ +M+  YKLEP LEHY C+I  +GRAGRL +A      MP EPDA +W
Sbjct: 731 HAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIW 790

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            +LLS S  +   +M  K  ++L+ +      +Y++++N+ +  G+WD V  VR+ MKD 
Sbjct: 791 SSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDL 850

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++K+ G SWIE++GKV+ F+AG+  +  +++I      L ++   +GY P    +LH +
Sbjct: 851 SLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHEL 910

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + EKR+ L  HSEK+A+ FG ++    G TLRI KNLRICRDCH + KYIS+  +REIV
Sbjct: 911 EEVEKRKILKGHSEKVAICFGFLN-TKEGTTLRISKNLRICRDCHNAAKYISKAAKREIV 969

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD  R+H F  G C+CGD W
Sbjct: 970 IRDNKRFHHFKKGICSCGDYW 990



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 183/405 (45%), Gaps = 38/405 (9%)

Query: 1   MALDLNQQPQPQNTSTDPRIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHI 59
           M + L +  Q +N     ++     + S  +   + N  LIT YS       S  +F+ +
Sbjct: 110 MGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRL 169

Query: 60  PSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
            + N+  W AL+S +  + L   +++ FL ++      F P+  T   L K C       
Sbjct: 170 LNKNLFQWNALVSGYVRNELYDEAIHTFLELI--SVTEFQPDNFTFPCLIKACTGKCDIH 227

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
           L G S+H +++K+ L    F G+A++  Y +    D A ++FD++ E++++ + ++I GF
Sbjct: 228 L-GKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGF 286

Query: 177 AQNSRLVDSLSVFADMRSSDVG-----STMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           ++N   +++   F  +  S  G     +TM  +   L   +    ++   VIHG AV  G
Sbjct: 287 SENGFWLEAYRAFRSLLESGDGLIPDVATMVTL---LPVCSGEGNVDVGMVIHGMAVKLG 343

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
           L   ++V   LID Y K G +S+A  +F   EN SV   ++WN+M+  Y+++G    V E
Sbjct: 344 LVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV---VSWNSMIGAYSREG---FVFE 397

Query: 290 LFHLL-----EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY-- 342
            F LL     E      +E + L +L A        ESE    R    Y L    ++   
Sbjct: 398 TFDLLRKMWMEEELMEVNEVTILNLLPACLE-----ESELLSLRALHGYSLRHSFQYKEL 452

Query: 343 --TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
                I+A  + G L  AE +   M      + W A++   A +G
Sbjct: 453 INNAFIAAYAKCGSLVFAEHVFFGMN-TKSVSSWNAVIGGHAQNG 496


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 316/561 (56%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H  +L+ S   + + NN  I  Y+K   L ++  +F  + + ++ SW A+I  H+ +
Sbjct: 436 RALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQN 495

Query: 78  --PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             P+ +L+ +  M R   L  LP+  ++ SL   C  L     +G  +H   L+  L   
Sbjct: 496 GDPIKALDFYFEMTR---LGILPDDFSIVSLLLACGRLG-LLQYGKEIHGFVLRNGLEMN 551

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F   +L+  Y     P   +  F+ + +++ VC+ AM+ G++QN    ++LS+F  M S
Sbjct: 552 SFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLS 611

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +      ++  L A ++L+A+   + +H  A+ + L  +  V   L+D Y K+G +  
Sbjct: 612 DGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGH 671

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           ++R+F+  L+     +WN M+ G+   G  +  +ELF  ++     PD ++FL VL A C
Sbjct: 672 SQRIFNR-LNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACC 730

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E   ++ +M+  YKLEP LEHY C+I  +GRAGRL +A      MP EPDA +W
Sbjct: 731 HAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIW 790

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            +LLS S  +   +M  K  ++L+ +      +Y++++N+ +  G+WD V  VR+ MKD 
Sbjct: 791 SSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDL 850

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++K+ G SWIE++GKV+ F+AG+  +  +++I      L ++   +GY P    +LH +
Sbjct: 851 SLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHEL 910

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + EKR+ L  HSEK+A+ FG ++    G TLRI KNLRICRDCH + KYIS+  +REIV
Sbjct: 911 EEVEKRKILKGHSEKVAICFGFLN-TKEGTTLRISKNLRICRDCHNAAKYISKAAKREIV 969

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD  R+H F  G C+CGD W
Sbjct: 970 IRDNKRFHHFKKGICSCGDYW 990



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 183/405 (45%), Gaps = 38/405 (9%)

Query: 1   MALDLNQQPQPQNTSTDPRIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHI 59
           M + L +  Q +N     ++     + S  +   + N  LIT YS       S  +F+ +
Sbjct: 110 MGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRL 169

Query: 60  PSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
            + N+  W AL+S +  + L   +++ FL ++      F P+  T   L K C       
Sbjct: 170 LNKNLFQWNALVSGYVRNELYDEAIHTFLELI--SVTEFQPDNFTFPCLIKACTGKCDIH 227

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
           L G S+H +++K+ L    F G+A++  Y +    D A ++FD++ E++++ + ++I GF
Sbjct: 228 L-GKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGF 286

Query: 177 AQNSRLVDSLSVFADMRSSDVG-----STMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           ++N   +++   F  +  S  G     +TM  +   L   +    ++   VIHG AV  G
Sbjct: 287 SENGFWLEAYRAFRSLLESGDGLIPDVATMVTL---LPVCSGEGNVDVGMVIHGMAVKLG 343

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
           L   ++V   LID Y K G +S+A  +F   EN SV   ++WN+M+  Y+++G    V E
Sbjct: 344 LVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV---VSWNSMIGAYSREG---FVFE 397

Query: 290 LFHLL-----EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY-- 342
            F LL     E      +E + L +L A        ESE    R    Y L    ++   
Sbjct: 398 TFDLLRKMWMEEELMEVNEVTILNLLPACLE-----ESELLSLRALHGYSLRHSFQYKEL 452

Query: 343 --TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
                I+A  + G L  AE +   M      + W A++   A +G
Sbjct: 453 INNAFIAAYAKCGSLVFAEHVFFGMN-TKSVSSWNAVIGGHAQNG 496


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 199/562 (35%), Positives = 303/562 (53%), Gaps = 13/562 (2%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA ALK     D  +  +    YSK+ L   +  +F+ +P  N+ +W A +S       
Sbjct: 131 LHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGR 190

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            L+   +  +   +   PN  T  +    CA +  +   G  LH   ++    +     +
Sbjct: 191 CLDAIAAFKKFLCVDGEPNAITFCAFLNACADIV-SLELGRQLHGFIVRSRYREDVSVFN 249

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            L+ FY +     +++ VF  I    R+VV + +++    QN     +  VF   R  +V
Sbjct: 250 GLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARK-EV 308

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             T + +S  L A AEL  +E  R +H  A+ + ++ N+ VG+ L+D YGK G +  A +
Sbjct: 309 EPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQ 368

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAPDEYSFLAVLTAL 313
           VF E +   N + WNAM+ GYA  GD    L LF   EM     G A    + ++VL+A 
Sbjct: 369 VFRE-MPERNLVTWNAMIGGYAHLGDVDMALSLFQ--EMTSGSCGIALSYVTLVSVLSAC 425

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
             AG      +  E M+ RY +EPG EHY C++  +GR+G ++ A      MP  P  +V
Sbjct: 426 SRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISV 485

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL    +HGK  +     ++L +++P D   +V+ +N+L+  GRW+E   VRK M+D
Sbjct: 486 WGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRD 545

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
             ++K  G SW+ VK +VHVF A D  HE+  +I   LA+L  E ++ GYVP  +  L +
Sbjct: 546 IGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFD 605

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           + + EK   +WYHSEK+ALAFGL++  PRG  +RI KNLRIC DCH + K+IS++V REI
Sbjct: 606 LEEEEKASEVWYHSEKIALAFGLIT-LPRGVPIRITKNLRICIDCHSAIKFISKIVGREI 664

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           +VRD NR+HRF +G C+C D W
Sbjct: 665 IVRDNNRFHRFKDGWCSCKDYW 686



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 194/424 (45%), Gaps = 11/424 (2%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--H 74
           R VHA  L++       +  N+L+  YSK +L + +  + +      +V+WT+LIS   H
Sbjct: 27  RAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVH 86

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           +    S  +  S +R   +  LPN  T   +FK  ASL H  + G  LH+L+LK      
Sbjct: 87  NRRFTSALLHFSNMRRECV--LPNDFTFPCVFKASASL-HMPVTGKQLHALALKGGNILD 143

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F G +    YS+      A+ +FDE+  R++  + A +    Q+ R +D+++ F     
Sbjct: 144 VFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLC 203

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            D           L A A++ ++E  R +HG  V S    +V V  GLID YGK G +  
Sbjct: 204 VDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVS 263

Query: 255 ARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +  VF    S   N ++W +++A   Q  ++     +F L   +   P ++   +VL+A 
Sbjct: 264 SELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVF-LQARKEVEPTDFMISSVLSAC 322

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G   E  + +  + ++  +E  +   + L+   G+ G +E AE++   MP E +   
Sbjct: 323 AELG-GLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMP-ERNLVT 380

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W A++   A  G  DMA  + + +   +     +YV + +VLS   R   V    ++ + 
Sbjct: 381 WNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFES 440

Query: 434 RRVR 437
            R R
Sbjct: 441 MRGR 444



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 117/269 (43%), Gaps = 7/269 (2%)

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP---FCGSALVHFYSRFRSPD 152
           +P    L   F   A LS + L G ++H+  L+   HD P   F  + LV+ YS+   P+
Sbjct: 3   VPRPPNLLGSFLESAVLSRSSLLGRAVHAHILRT--HDTPLPSFLCNHLVNMYSKLDLPN 60

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A+ V      R VV + ++I G   N R   +L  F++MR   V    +      +A+A
Sbjct: 61  SAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASA 120

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
            L      + +H  A+  G   +V VG    D Y K G+  +AR +FDE +   N   WN
Sbjct: 121 SLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDE-MPHRNLATWN 179

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           A M+   Q G     +  F         P+  +F A L A C   ++ E  + +    VR
Sbjct: 180 AYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNA-CADIVSLELGRQLHGFIVR 238

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERI 361
            +    +  +  LI   G+ G +  +E +
Sbjct: 239 SRYREDVSVFNGLIDFYGKCGDIVSSELV 267


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 314/563 (55%), Gaps = 18/563 (3%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
           +HAR+LK  S  +  +  +L+T Y++  LL  + R+F+ +P P+ VSWTALI+A+ ++  
Sbjct: 93  LHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGD 152

Query: 79  ------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
                 ++ N F + +R       P+  T   +   CA ++     G ++   + +  + 
Sbjct: 153 LREAVHVARNAFANGMR-------PDSFTAVRVLTACARVAD-LATGETVWRAAEQEGIA 204

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F  +A V  Y +      A++VFD++R++D V +GAM+ G+A N    ++L +F  M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           ++  V    Y V+GAL A   L A++  R             N ++GT LID Y K G  
Sbjct: 265 QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 324

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           ++A  VF + +   + I WNAM+ G    G + T   L   +E  G   ++ +F+ +L +
Sbjct: 325 AEAWVVF-QQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCS 383

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL  +  ++   M   Y + P +EHY C++  + RAG L++A ++   MP   +A 
Sbjct: 384 CTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAV 443

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +  ALL    IH  A++A  +  +LI + P++   YV+++N+ S  GRW++ A++R  MK
Sbjct: 444 ILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMK 503

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           ++ V K    SW+E +GKVH F  GD+ H  ++ IY KL EL  E + +GY P  + ++ 
Sbjct: 504 EKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMF 563

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V D EK   L +HSEKLA+AF L+   P G+T+R+ KNLR+C DCH + K ISR+  RE
Sbjct: 564 DVEDEEKEHTLVHHSEKLAIAFNLLVTGP-GETIRVTKNLRVCSDCHTAIKLISRITHRE 622

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+H F +GSC+C D W
Sbjct: 623 IIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 5/283 (1%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+  T     K+ + L H    G  LH+ SLKL  H  P   ++L+  Y+R      A++
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VFDE+     V + A+I  +     L +++ V  +  ++ +    +     L A A +A 
Sbjct: 128 VFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVAD 187

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +     +   A   G+ ++V V T  +D Y K G ++ AR VFD+ +   +++AW AM+ 
Sbjct: 188 LATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDK-MRDKDAVAWGAMVG 246

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GYA  G     L+LF  ++  G  PD Y+    L+A    G      + I  +     L+
Sbjct: 247 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 306

Query: 337 -PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
            P L   T LI    + G   +A  +   M  + D  VW A++
Sbjct: 307 NPVLG--TALIDMYAKCGSTAEAWVVFQQM-RKKDIIVWNAMI 346


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 206/601 (34%), Positives = 323/601 (53%), Gaps = 48/601 (7%)

Query: 15  STDP---RIVHAR-ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           S DP   +IV  R  LKS+    S +N +I+++ +S L+  +   F  +   ++VSW A+
Sbjct: 193 SGDPVTAKIVFDRMKLKST----SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAM 248

Query: 71  ISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
           IS ++       +L+IF  ML     S  P++ TLAS    CA+L +  L G  +H+  +
Sbjct: 249 ISGYNQHGFDREALDIFSKMLMDS--SSKPDKFTLASALSACANLENLKL-GKQIHAHII 305

Query: 128 KLSLHDKPFCGSALVHFYSR---------------------------------FRSPDNA 154
           +         G+AL+  YS+                                     + A
Sbjct: 306 RTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPA 365

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           +++FD +R RDVV + AMIVG+ QN    D++ +F  M         Y ++  L  ++ L
Sbjct: 366 RRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSL 425

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           A+++  R IH  A  SG   +V V   LI  Y K+G ++DAR VF+      ++I W +M
Sbjct: 426 ASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSM 485

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           +   AQ G     L LF  +   G  PD  +++ VL+A  + GL  +   +   M+  +K
Sbjct: 486 IIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHK 545

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           + P   HY C+I   GRAG L++A      MP EPD   W +LL+   +H   ++A    
Sbjct: 546 IIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAA 605

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
           +RL+ I P +  AY  +ANV S  G+W+  A +RK MKD+ V+K+ G SW+++K KVH+F
Sbjct: 606 ERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIF 665

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
              D +H + + IY  +A++ +E +++G+VP  + +LH++ +  K + L +HSEKLA+AF
Sbjct: 666 GVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAF 725

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+   P   TLRI+KNLR+C DCH + K+IS++V REI+VRD  R+H F NG C+C D 
Sbjct: 726 GLIC-TPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDY 784

Query: 575 W 575
           W
Sbjct: 785 W 785



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 195/451 (43%), Gaps = 71/451 (15%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N +++ Y+K   L  + R+F  +P P+ VSWTA+I  ++      N         +   
Sbjct: 82  WNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDV 141

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P Q TL ++  +CA++      G  +HS  +K  L       ++L++ Y++   P  AK
Sbjct: 142 PPTQFTLTNVLASCAAVE-CLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAK 200

Query: 156 KVFDEIR-------------------------------ERDVVCYGAMIVGFAQNSRLVD 184
            VFD ++                               ERDVV + AMI G+ Q+    +
Sbjct: 201 IVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDRE 260

Query: 185 SLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR--------- 234
           +L +F+ M   S      + ++ AL A A L  ++  + IH H + +  D          
Sbjct: 261 ALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALI 320

Query: 235 ------------------------NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
                                   +VI  T L+DGY K G ++ ARR+FD +L V + +A
Sbjct: 321 SMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFD-SLRVRDVVA 379

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W AM+ GY Q G     +ELF  +   G  P+ Y+ LA + ++ ++  + +  + I    
Sbjct: 380 WTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYT-LATMLSVSSSLASLDHGRQIHASA 438

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            R      +     LI+   ++G + DA  +   + ++ D   W +++   A HG  + A
Sbjct: 439 TRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEA 498

Query: 391 SKMGKRLID--INPYDDSAYVIVANVLSGVG 419
             + +R+++  I P D   YV V +  + VG
Sbjct: 499 LTLFERMLENGIKP-DHITYVGVLSACTHVG 528



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 46/299 (15%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  + ++  Y++    + A +VF+E+ E D V + AMIVG+ Q  +  +++ +F +M S 
Sbjct: 80  FSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSD 139

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           DV  T + ++  L + A +  +   R +H   V  GL   + V   L++ Y K+G    A
Sbjct: 140 DVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTA 199

Query: 256 RRVFD------------------------------ENLSVLNSIAWNAMMAGYAQQGDQS 285
           + VFD                              E +   + ++WNAM++GY Q G   
Sbjct: 200 KIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDR 259

Query: 286 TVLELFHLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
             L++F  + M   + PD+++  + L+A  N     +  K I    +R + +        
Sbjct: 260 EALDIFSKMLMDSSSKPDKFTLASALSACANLENL-KLGKQIHAHIIRTEFDTFGAVGNA 318

Query: 345 LISAMGRAGRLEDAER-IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
           LIS   ++G +E A++ I  +M    D   + ALL         D   K+G    DINP
Sbjct: 319 LISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL---------DGYVKLG----DINP 364


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 306/557 (54%), Gaps = 5/557 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  ALK    ++  + +NL   YSK   +  + ++F  +P  + VSWTA+I  +S    
Sbjct: 128 MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 187

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                L+  +        +Q  L S    C +L  A  FG S+HS  +KL      F G+
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALK-ACKFGRSVHSSVVKLGFESDIFVGN 246

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           AL   YS+    ++A  VF    E R+VV Y  +I G+ +  ++   LSVF ++R   + 
Sbjct: 247 ALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE 306

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
              +  S  ++A A  AA+EQ   +H   +    D +  V + L+D YGK G++  A + 
Sbjct: 307 PNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQA 366

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FDE +     IAWN++++ + Q G     +++F  +  RG  P+  +F+++LT   +AGL
Sbjct: 367 FDE-IGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGL 425

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E   +   M   Y + PG EHY+C+I  +GRAGRL++A+     MPFEP+A  W + L
Sbjct: 426 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 485

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               IHG  +M     ++L+ + P +  A V+++N+ +   +W++V  VR  M+D  V+K
Sbjct: 486 GACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKK 545

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
             G SW++V  K HVF A D  H R   IY KL  L+++ +  GYVP  D +  ++ D  
Sbjct: 546 LPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSM 605

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K + L  HSE++A+AF L+S  P GK + + KNLR+C DCH + K+IS+V  R+I+VRD 
Sbjct: 606 KEKLLHRHSERIAVAFALIS-MPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDN 664

Query: 559 NRYHRFLNGSCTCGDLW 575
           +R+H F +GSC+CGD W
Sbjct: 665 SRFHHFTDGSCSCGDYW 681



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 183/369 (49%), Gaps = 11/369 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPLS--LNIFLSMLRHP 91
           + N+L+  YSK   L ++L+LF+ +P  N+VSWTA+IS  S NS  S  +  F  M    
Sbjct: 42  LTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGM---R 98

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
               +P Q   +S  + CASL  +   G  +H L+LK  +  + F GS L   YS+  + 
Sbjct: 99  ICGEVPTQFAFSSAIRACASLG-SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAM 157

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
            +A KVF+E+  +D V + AMI G+++     ++L  F  M   +V    + +   L A 
Sbjct: 158 FDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGAC 217

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
             L A +  R +H   V  G + ++ VG  L D Y KAG +  A  VF  +    N +++
Sbjct: 218 GALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSY 277

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN-AGLAGESEKWIERMK 330
             ++ GY +       L +F  L  +G  P+E++F +++ A  N A L   ++   + MK
Sbjct: 278 TCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK 337

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           + +  +P +   + L+   G+ G LE A + A     +P    W +L+S    HG    A
Sbjct: 338 INFDEDPFVS--SILVDMYGKCGLLEQAIQ-AFDEIGDPTEIAWNSLVSVFGQHGLGKDA 394

Query: 391 SKMGKRLID 399
            K+ +R++D
Sbjct: 395 IKIFERMVD 403



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 2/243 (0%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  LH+L +        F  + LV+ YS+    D+A K+FD + +R++V + AMI G +Q
Sbjct: 24  GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           NS+  +++  F  MR      T +  S A+RA A L ++E  + +H  A+  G+   + V
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           G+ L D Y K G + DA +VF+E +   + ++W AM+ GY++ G+    L  F  +    
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEE-MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE 202

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
              D++   + L A C A  A +  + +    V+   E  +     L     +AG +E A
Sbjct: 203 VTIDQHVLCSTLGA-CGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESA 261

Query: 359 ERI 361
             +
Sbjct: 262 SNV 264



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 90/192 (46%), Gaps = 3/192 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           ++  A+   + + + +H   + +G      +   L++ Y K G +  A ++FD  +   N
Sbjct: 12  IQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFD-TMPQRN 70

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W AM++G +Q    S  +  F  + + G  P +++F + + A  + G + E  K + 
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG-SIEMGKQMH 129

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            + +++ +   L   + L     + G + DA ++   MP + D   W A++   +  G+ 
Sbjct: 130 CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDGYSKIGEF 188

Query: 388 DMASKMGKRLID 399
           + A    K++ID
Sbjct: 189 EEALLAFKKMID 200


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 305/556 (54%), Gaps = 19/556 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPLSLNIFLSMLRHP 91
           +N ++  YS+      ++RLF  +    I    V+W+A IS ++   L         +  
Sbjct: 298 WNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQML 357

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-------DKPFCGSALVHF 144
           +    PN+ TL S+   CAS+  A + G  +H  ++K  +        D+    + L+  
Sbjct: 358 SSGIKPNEVTLISVLSGCASVG-ALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDM 416

Query: 145 YSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS--T 200
           Y++ +  D A+ +FD +  +ERDVV +  MI G++Q+     +L + ++M   D  +   
Sbjct: 417 YAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR-NVIVGTGLIDGYGKAGIVSDARRVF 259
            + +S AL A A LAA+   + IH +A+ +  +   + V   LID Y K G + DAR VF
Sbjct: 477 AFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVF 536

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D N+   N + W ++M GY   G     L +F  +   GF  D  + L VL A  ++G+ 
Sbjct: 537 D-NMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMI 595

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +  ++  RMK  + + PG EHY CL+  +GRAGRL  A R+   MP EP   VW ALLS
Sbjct: 596 DQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLS 655

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IHGK ++     K++ ++   +D +Y +++N+ +  GRW +V  +R +M+ + ++K 
Sbjct: 656 CCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKR 715

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SW+E       F  GD+ H   ++IY  L++ M+  + +GYVP     LH+V D EK
Sbjct: 716 PGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEK 775

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
            + L+ HSEKLALA+G+++  P+G  +RI KNLR+C DCH +F Y+SR+++ EI++RD +
Sbjct: 776 DDLLFEHSEKLALAYGILT-TPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSS 834

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F NG C+C   W
Sbjct: 835 RFHHFKNGLCSCKGYW 850



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 154/317 (48%), Gaps = 15/317 (4%)

Query: 14  TSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN--IVSWTALI 71
           T +  +++H + L       ++ ++LI+ Y     LS+++ L    P  +  +  W +LI
Sbjct: 40  TISQVKLIHQKLLSFGILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
            ++ N+  +     S     +LS+ P+  T   +FK C  +S +   G S H+LS     
Sbjct: 100 RSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEIS-SVRCGDSSHALSRVTGF 158

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F G+ALV  YSR  S  +A+KVFDE+   DVV + ++I  +A+  +   +L +F+ 
Sbjct: 159 MSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSK 218

Query: 192 M------RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           M      R  D+      +   L   A +      +  HG AV S + +N+ VG  L+D 
Sbjct: 219 MTNEFGFRPDDI-----TLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDM 273

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K G++ +A  VF  N+ V + ++WNAM+AGY+Q G     + LF  ++      D  +
Sbjct: 274 YAKFGMMDEANTVF-SNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVT 332

Query: 306 FLAVLTALCNAGLAGES 322
           + A ++     GL  E+
Sbjct: 333 WSAAISGYAQRGLGYEA 349



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 186/447 (41%), Gaps = 57/447 (12%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPTL 93
           N L+  YS+   LS + ++F+ +P  ++VSW ++I +++      ++L +F  M      
Sbjct: 166 NALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNE--F 223

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            F P+  TL ++   CAS+    L G   H  ++   +    F G+ LV  Y++F   D 
Sbjct: 224 GFRPDDITLVNVLPPCASVGTRSL-GKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDE 282

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A  VF  +  +DVV + AM+ G++Q  R  D++ +F  M+   +   +   S A+   A+
Sbjct: 283 ANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQ 342

Query: 214 ----LAAMEQCR----------------VIHGHAVVSGL--------------------- 232
                 A+  CR                V+ G A V  L                     
Sbjct: 343 RGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNG 402

Query: 233 --DRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
             D N+++   LID Y K   V  AR +FD  +    + + W  M+ GY+Q GD +  LE
Sbjct: 403 HGDENMVINQ-LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALE 461

Query: 290 LFHLL--EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLI 346
           L   +  E     P+ ++    L A C +  A    K I    +R +     L    CLI
Sbjct: 462 LLSEMFEEDCQTRPNAFTISCALVA-CASLAALSIGKQIHAYALRNQQNAVPLFVSNCLI 520

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDD 405
               + G + DA R+      E +   W +L++   +HG  + A  + + +  I    D 
Sbjct: 521 DMYAKCGDIGDA-RLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDG 579

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMK 432
              ++V    S  G  D+  E    MK
Sbjct: 580 VTLLVVLYACSHSGMIDQGMEYFNRMK 606



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 146/330 (44%), Gaps = 23/330 (6%)

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK--- 128
           +A S+  L +++F +     T  F+   +T++ +      L H  L    + +L+L    
Sbjct: 11  AAKSHQHLKVSLFSTSALEITPPFIHKCKTISQV-----KLIHQKLLSFGILTLNLTSHL 65

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
           +S +    C S  V    RF   D             V  + ++I  +  N R    LS 
Sbjct: 66  ISTYISLGCLSHAVSLLRRFPPSDAG-----------VYHWNSLIRSYGNNGRANKCLSS 114

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           F  M S       Y      +A  E++++      H  + V+G   NV VG  L+  Y +
Sbjct: 115 FCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSR 174

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFL 307
            G +SDAR+VFDE + V + ++WN+++  YA+ G     LE+F  +    GF PD+ + +
Sbjct: 175 CGSLSDARKVFDE-MPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLV 233

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            VL    + G     +++     V  ++   +    CL+    + G +++A  +   MP 
Sbjct: 234 NVLPPCASVGTRSLGKQF-HGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPV 292

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           + D   W A+++  +  G+ + A ++ +++
Sbjct: 293 K-DVVSWNAMVAGYSQIGRFEDAVRLFEQM 321


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 307/566 (54%), Gaps = 17/566 (3%)

Query: 21  VHARALKSSQADRSIYN--NLIT--NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +HA+ LKS    +   N   L T    S +  L+Y+  + N + + N      +I A+S 
Sbjct: 12  LHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQ 71

Query: 77  SP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +P    +L++FLSML  PT S  P++ T   L K+CA L    + G  LH L  K  L  
Sbjct: 72  TPDPTQALHLFLSMLCQPT-SPRPDKFTYPFLLKSCARLKQPRV-GKQLHGLIYKSGLES 129

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             +  + L+H YS       A KVF ++R+RDVV + +MI GF  + R ++++ +F +M 
Sbjct: 130 DRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMV 189

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              V      V   LRA A+  A+   R + G      +     V T LID Y K G + 
Sbjct: 190 EDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIG 249

Query: 254 DARRVFDENLSVLNS--IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
            AR+VFD    ++N    AW AM++G A  G     + LF  +E  G  PDE +  AVL+
Sbjct: 250 SARKVFD---GIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLS 306

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  NAG   E   +   M  +Y ++P ++HY C++  + R G L++AE     MP EPD 
Sbjct: 307 ACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDV 366

Query: 372 AVWRALLSFSAIHGKADMASKMGKR--LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
            +WR L+  S +HG  D + ++ K   L+ ++  D  +YV++ NV +  G+W + A++R+
Sbjct: 367 VLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRE 426

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
           +M  + + K  G S IEV G VH F AGD  H   E IY KL E+ E  +  GY P   E
Sbjct: 427 LMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSE 486

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +L  + ++EK   L +HSEKLA+AFGL+  +P G  +RIVKNLR C DCH   K IS++ 
Sbjct: 487 VLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSP-GTEIRIVKNLRSCEDCHSVLKLISKIY 545

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
           +++I+VRD  R+H F+NG C+C D W
Sbjct: 546 QQDIIVRDRIRFHHFINGDCSCKDYW 571


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 202/564 (35%), Positives = 313/564 (55%), Gaps = 15/564 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H R L S    D  +   L+  Y+    + ++ RLF+ +P  N+  W  LI A++  
Sbjct: 82  RQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYARE 141

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                ++ ++  M+ H      P+  T   + K CA+L      G  +H           
Sbjct: 142 GPREAAVRLYRGMVEH---GVEPDNFTYPLVLKACAALLD-LETGREVHQRVSGTRWGQD 197

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  + +V  Y++    D+A+ VFD I  RD V + +MI  + QN R +++L++  DM +
Sbjct: 198 VFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAA 257

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + +G T+  +  A+ AAA+ AA+ + R +HG     G      + T L+D Y K+G V  
Sbjct: 258 NGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQV 317

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA---PDEYSFLAVLT 311
           AR +F E L     ++WNAM+ GY   G     L LF+  +M+G A   PD  +F+ VL+
Sbjct: 318 ARVLF-EQLMKRELVSWNAMICGYGMHGHADEALALFN--KMKGDAQVTPDNITFVGVLS 374

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + G+  E++++   M   Y ++P ++HYTC+I  +G  GR E+A  +   M  EPD+
Sbjct: 375 ACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDS 434

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            +W ALL+   IH   ++     ++LI++ P D   YV ++N+ +  G+W++ A VRK+M
Sbjct: 435 GIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLM 494

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
            +R ++K    SWIE+KGK H FL GD  H R+++IY +L  L       GYVP    + 
Sbjct: 495 TNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVF 554

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           HNV D EKR  +  HSE+LA+AFGL+S  P G  L + KNLR+C DCH   K IS++V+R
Sbjct: 555 HNVDDDEKRNMVRSHSERLAIAFGLIS-TPPGTKLLVTKNLRVCEDCHVVIKLISQIVQR 613

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI++RDVNRYH F+NG C+C D W
Sbjct: 614 EIIIRDVNRYHHFVNGECSCKDYW 637



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 148/336 (44%), Gaps = 18/336 (5%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           S+ ++C + S +   G  LH   L   L       + LV  Y+      +A+++FD + +
Sbjct: 67  SILQSCVA-SGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPK 125

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           R+V  +  +I  +A+      ++ ++  M    V    +     L+A A L  +E  R +
Sbjct: 126 RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREV 185

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H     +   ++V V  G++D Y K G V DAR VFD  ++V +++ WN+M+A Y Q G 
Sbjct: 186 HQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFD-GIAVRDAVVWNSMIAAYGQNGR 244

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA-----GLAGESEKWIERMKVRYKLEPG 338
               L L   +   G  P   + ++ ++A  +A     G       W     ++ KL+  
Sbjct: 245 PMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLK-- 302

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL- 397
               T L+    ++G ++ A R+      + +   W A++    +HG AD A  +  ++ 
Sbjct: 303 ----TSLVDMYAKSGWVQVA-RVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMK 357

Query: 398 --IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
               + P D+  +V V +  +  G  +E  E   +M
Sbjct: 358 GDAQVTP-DNITFVGVLSACNHGGMVEEAKEFFYLM 392


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 179/539 (33%), Positives = 309/539 (57%), Gaps = 3/539 (0%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N L+  YSK   +    ++F  +P  ++VS+  +I+ ++ S +  +    +    T    
Sbjct: 144 NALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLK 203

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+  TL+S+    +      L G  +H   ++  +    + GS+LV  Y++    +++++
Sbjct: 204 PDAFTLSSVLPIFSEYVDV-LKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSER 262

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF  +  RD + + +++ G+ QN R  ++L +F  M S+ V       S  + A A LA 
Sbjct: 263 VFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLAT 322

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +   + +HG+ +  G  RN+ + + L+D Y K G +  AR++FD  +++ + ++W A++ 
Sbjct: 323 LHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDR-MNLHDEVSWTAIIM 381

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           G+A  G     + LF  ++ +G  P++ +F+AVLTA  + GL  E+  +   M   Y L 
Sbjct: 382 GHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLN 441

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
             LEHY  +   +GRAG+LE+A      M  EP  +VW  LLS  ++H   ++A K+ ++
Sbjct: 442 QELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEK 501

Query: 397 LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLA 456
           +  I+  +  AYV++ N+ +  GRW E+A++R  ++ + +RK+   SWIE+K K H F++
Sbjct: 502 IFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVS 561

Query: 457 GDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGL 516
           GDR H   + I   L  +ME+ E+ GYV     +LH+V +  KRE L+ HSE+LA+AFG+
Sbjct: 562 GDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGI 621

Query: 517 VSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++  P G T+R+ KN+RIC DCH + K+IS++ EREI+VRD +R+H F  GSC+CGD W
Sbjct: 622 INTEP-GTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 203/421 (48%), Gaps = 7/421 (1%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           L + P    + +  + +HA+ +++     +  + +I+ Y+   LL  +L +F  + SP +
Sbjct: 11  LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPPV 70

Query: 65  VSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
           ++W ++I   ++  L      S +        P+     S+ K+C ++     FG S+H 
Sbjct: 71  LAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSC-TMMMDLRFGESVHG 129

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
             ++L +    + G+AL++ YS+    D+ +KVF+ +  +DVV Y  +I G+AQ+    D
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYED 189

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L +  +M +SD+    + +S  L   +E   + + + IHG+ +  G+D +V +G+ L+D
Sbjct: 190 ALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVD 249

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K+  + D+ RVF  +L   +SI+WN+++AGY Q G  +  L LF  +      P   
Sbjct: 250 MYAKSARIEDSERVFS-HLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAV 308

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F +V+ A C         K +    +R      +   + L+    + G ++ A +I   
Sbjct: 309 AFSSVIPA-CAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDR 367

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWD 422
           M    D   W A++   A+HG    A  + + +    + P +  A+V V    S VG  D
Sbjct: 368 MNLH-DEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKP-NQVAFVAVLTACSHVGLVD 425

Query: 423 E 423
           E
Sbjct: 426 E 426


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 296/556 (53%), Gaps = 4/556 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H+ ++K+  ++D  +   LI  YSK   L  + ++   +   ++VSWT++I+ +     
Sbjct: 368 IHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 +          P+   LAS    CA +  A   GL +H+              +
Sbjct: 428 CEEALATFKEMQDCGVWPDNIGLASAASACAGIK-AMRQGLQIHARVYVSGYAADISIWN 486

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            LV+ Y+R    + A  +F EI  +D + +  +I GF Q+     +L VF  M  +    
Sbjct: 487 TLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKY 546

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            ++    A+ A A LA ++Q + +HG AV +G      V   LI  YGK G + DA+ +F
Sbjct: 547 NVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIF 606

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +S+ N ++WN ++   +Q G     L+LF  ++  G  P++ +F+ VL A  + GL 
Sbjct: 607 SE-MSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV 665

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E   + + M   Y L P  +HY C++  +GRAG+L+ A R    MP   +A +WR LLS
Sbjct: 666 EEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLS 725

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +H   ++     K L+++ P+D ++YV+++N  +  G+W    +VRK+MKDR +RKE
Sbjct: 726 ACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKE 785

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            GRSWIEVK  VH F  GDR+H  ++ IY  L+EL +   ++GY      + H     +K
Sbjct: 786 PGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQK 845

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
               + HSEKLA+AFGL++  P    LR++KNLR+C DCH   K  S V  REIV+RDV 
Sbjct: 846 DPTAFVHSEKLAVAFGLMT-LPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVY 904

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +GSC+CGD W
Sbjct: 905 RFHHFNSGSCSCGDYW 920



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 188/421 (44%), Gaps = 18/421 (4%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
           +H+  LK+  + D     +L+  Y K   +  +  +FN     N+V W  ++ A+   S+
Sbjct: 267 LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S  IF  M         PNQ T   + +TC       L G  +HSLS+K       +
Sbjct: 327 LAKSFEIFGQM---QATGIHPNQFTYPCILRTCTCTGQIEL-GEQIHSLSIKNGFESDMY 382

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
               L+  YS++   D A+K+ + + +RDVV + +MI G+ Q+    ++L+ F +M+   
Sbjct: 383 VSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      ++ A  A A + AM Q   IH    VSG   ++ +   L++ Y + G   +A 
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAF 502

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F E +   + I WN +++G+ Q       L +F  +   G   + ++F++ ++AL N 
Sbjct: 503 SLFRE-IEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANL 561

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               +  K +    V+       E    LIS  G+ G +EDA+ I   M    + + W  
Sbjct: 562 ADIKQG-KQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-WNT 619

Query: 377 LLSFSAIHGKA----DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +++  + HG+     D+  +M +  +  N   D  ++ V    S VG  +E     K M 
Sbjct: 620 IITSCSQHGRGLEALDLFDQMKQEGLKPN---DVTFIGVLAACSHVGLVEEGLSYFKSMS 676

Query: 433 D 433
           +
Sbjct: 677 N 677



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 180/388 (46%), Gaps = 7/388 (1%)

Query: 21  VHARAL-KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA ++ +   ADR I N LI  Y+K+ L+  + ++F  + S + VSW A++S ++ S L
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL 124

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
               F    +    + +P    L+S+   C      F  G  +H+   K +   + F G+
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTK-GKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  Y  F S   A++VF ++   D V +  +I G AQ      +L +F +M+ S +  
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               V+  L A A +  +++ + +H + + +G+  + I    L+D Y K G +  A  +F
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF 303

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL-TALCNAGL 318
           +      N + WN M+  Y Q  D +   E+F  ++  G  P+++++  +L T  C   +
Sbjct: 304 NLG-DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQI 362

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E  + I  + ++   E  +     LI    + G L+ A +I + M  + D   W +++
Sbjct: 363 --ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKI-LEMLEKRDVVSWTSMI 419

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDS 406
           +    H   + A    K + D   + D+
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDN 447



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 1/216 (0%)

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           L    + C    + +   L +H+ S+   L      G+ L+  Y++      A++VF E+
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
             RD V + AM+ G+AQ+    ++  +++ M  + V  T Y +S  L A  +     Q R
Sbjct: 105 SSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
           +IH             VG  LI  Y   G    A RVF + L   + + +N +++G+AQ 
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDML-FCDRVTFNTLISGHAQC 223

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           G     L++F  +++ G  PD  +  ++L A  + G
Sbjct: 224 GHGECALQIFDEMQLSGLRPDCVTVASLLAACASVG 259


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 190/556 (34%), Positives = 308/556 (55%), Gaps = 3/556 (0%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH + LK+    D  +   L+  Y++   +S + ++FN +P  ++V W+ +I+    +  
Sbjct: 269 VHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGF 328

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                   +R      +PN+ TL+S+   CA +      G  LH L +K+      +  +
Sbjct: 329 CNEAVDLFIRMREAFVVPNEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDIYVSN 387

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  Y++    D A K+F E+  ++ V +  +IVG+        + S+F +   + V  
Sbjct: 388 ALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSV 447

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T    S AL A A LA+M+    +HG A+ +   + V V   LID Y K G +  A+ VF
Sbjct: 448 TEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVF 507

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +E +  ++  +WNA+++GY+  G     L +  +++ R   P+  +FL VL+   NAGL 
Sbjct: 508 NE-METIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLI 566

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            + ++  E M   + +EP LEHYTC++  +GR+G+L+ A ++   +P+EP   +WRA+LS
Sbjct: 567 DQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLS 626

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
            S      + A +  + ++ INP D++ YV+V+N+ +G  +W  VA +RK MK+  V+KE
Sbjct: 627 ASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKE 686

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SWIE +G VH F  G   H   + I   L  L  +  R GYVP  + +L ++ D EK
Sbjct: 687 PGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEK 746

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
            + LW HSE+LALA+GLV        + I+KNLRIC DCH + K IS +V+R++V+RD+N
Sbjct: 747 DKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMN 806

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F  G C+CGD W
Sbjct: 807 RFHHFHAGVCSCGDHW 822



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 160/352 (45%), Gaps = 10/352 (2%)

Query: 12  QNTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           +N     + +H   LK  S  D    N L+  Y K+     +L LF+ +P  N VS+  L
Sbjct: 62  KNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTL 121

Query: 71  ISAHS-NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
              ++   P+ L   L    H       N     S  K   SL  A +    LHS  +KL
Sbjct: 122 AQGYACQDPIGLYSRLHREGHEL-----NPHVFTSFLKLFVSLDKAEICPW-LHSPIVKL 175

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
                 F G+AL++ YS   S D+A+ VF+ I  +D+V +  ++  + +N    DSL + 
Sbjct: 176 GYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLL 235

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
           + MR +      Y    AL+A+  L A +  + +HG  + +    +  VG GL+  Y + 
Sbjct: 236 SCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQL 295

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +SDA +VF+E +   + + W+ M+A + Q G  +  ++LF  +      P+E++  ++
Sbjct: 296 GDMSDAFKVFNE-MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSI 354

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           L        +G  E+ +  + V+   +  +     LI    +  +++ A ++
Sbjct: 355 LNGCAIGKCSGLGEQ-LHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKL 405


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 306/557 (54%), Gaps = 5/557 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  ALK    ++  + +NL   YSK   +  + ++F  +P  + VSWTA+I  +S    
Sbjct: 63  MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 122

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                L+  +        +Q  L S    C +L  A  FG S+HS  +KL      F G+
Sbjct: 123 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALK-ACKFGRSVHSSVVKLGFESDIFVGN 181

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           AL   YS+    ++A  VF    E R+VV Y  +I G+ +  ++   LSVF ++R   + 
Sbjct: 182 ALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE 241

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
              +  S  ++A A  AA+EQ   +H   +    D +  V + L+D YGK G++  A + 
Sbjct: 242 PNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQA 301

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FDE +     IAWN++++ + Q G     +++F  +  RG  P+  +F+++LT   +AGL
Sbjct: 302 FDE-IGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGL 360

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E   +   M   Y + PG EHY+C+I  +GRAGRL++A+     MPFEP+A  W + L
Sbjct: 361 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 420

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               IHG  +M     ++L+ + P +  A V+++N+ +   +W++V  VR  M+D  V+K
Sbjct: 421 GACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKK 480

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
             G SW++V  K HVF A D  H R   IY KL  L+++ +  GYVP  D +  ++ D  
Sbjct: 481 LPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSM 540

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K + L  HSE++A+AF L+S  P GK + + KNLR+C DCH + K+IS+V  R+I+VRD 
Sbjct: 541 KEKLLHRHSERIAVAFALIS-MPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDN 599

Query: 559 NRYHRFLNGSCTCGDLW 575
           +R+H F +GSC+CGD W
Sbjct: 600 SRFHHFTDGSCSCGDYW 616



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 167/345 (48%), Gaps = 11/345 (3%)

Query: 59  IPSPNIVSWTALISAHS-NSPLS--LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115
           +P  N+VSWTA+IS  S NS  S  +  F  M        +P Q   +S  + CASL  +
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGM---RICGEVPTQFAFSSAIRACASLG-S 56

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
              G  +H L+LK  +  + F GS L   YS+  +  +A KVF+E+  +D V + AMI G
Sbjct: 57  IEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDG 116

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           +++     ++L  F  M   +V    + +   L A   L A +  R +H   V  G + +
Sbjct: 117 YSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESD 176

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           + VG  L D Y KAG +  A  VF  +    N +++  ++ GY +       L +F  L 
Sbjct: 177 IFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 236

Query: 296 MRGFAPDEYSFLAVLTALCN-AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
            +G  P+E++F +++ A  N A L   ++   + MK+ +  +P +   + L+   G+ G 
Sbjct: 237 RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGL 294

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           LE A + A     +P    W +L+S    HG    A K+ +R++D
Sbjct: 295 LEQAIQ-AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVD 338


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 308/563 (54%), Gaps = 16/563 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA--- 73
           +++  +ALKS    D+ +   L+   SK   +  +L LF+ +    N+VSWTA+IS    
Sbjct: 315 KLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQ 374

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +  +  ++N+F  M R       PN  T +++        H  +F   +H+  +K +   
Sbjct: 375 NGGNDQAVNLFSQMRRE---GVKPNHFTYSAILTV-----HYPVFVSEMHAEVIKTNYER 426

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               G+AL+  Y +  +  +A KVF+ I  +D++ + AM+ G+AQ     ++  +F  + 
Sbjct: 427 SSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLI 486

Query: 194 SSDVGSTMYCVSGALRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
              +    +  S  + A A+  AA EQ +  H +A+   L+  + V + L+  Y K G +
Sbjct: 487 KEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNI 546

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A  VF       + ++WN+M++GY+Q G     LE+F  ++ R    D  +F+ V+TA
Sbjct: 547 DSAHEVFKRQKE-RDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITA 605

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  + +K+   M   + + P ++HY+C+I    RAG LE A  I   MPF P A 
Sbjct: 606 CTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGAT 665

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VWR LL  + +H   ++     ++LI + P D +AYV+++N+ +  G W E   VRK+M 
Sbjct: 666 VWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMD 725

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            R+V+KE G SWIEVK K + FLAGD  H  +  IY+KL+EL    +  GY P    + H
Sbjct: 726 KRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFH 785

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ D +K   L +HSE+LA+AFGL++  P    ++IVKNLR+C DCH   K +S V +R 
Sbjct: 786 DIEDEQKETILSHHSERLAIAFGLIATPPE-IPIQIVKNLRVCGDCHNFTKLVSLVEQRY 844

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H F +G C+CGD W
Sbjct: 845 IVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 183/381 (48%), Gaps = 8/381 (2%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH + +K    D  S+  +L+  Y K+  ++   R+F+ +   N+VSWT+L++ +S +
Sbjct: 113 RQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWN 172

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L   ++    +      LPN+ T++++     +       GL +H++ +K    +    
Sbjct: 173 GLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVN-EGVVGIGLQVHAMVVKHGFEEAIPV 231

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  YSR     +A+ VFD++  RD V + +MI G+ +N + ++   +F  M+ + V
Sbjct: 232 FNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGV 291

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             T    +  +++ A L  +   +++   A+ SG   + IV T L+    K   + DA  
Sbjct: 292 KPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALS 351

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F       N ++W AM++G  Q G     + LF  +   G  P+ +++ A+LT      
Sbjct: 352 LFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVF 411

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +   SE   E +K  Y+    +   T L+ A  + G   DA ++   +  + D   W A+
Sbjct: 412 V---SEMHAEVIKTNYERSSSVG--TALLDAYVKLGNTIDAVKVFEIIEAK-DLMAWSAM 465

Query: 378 LSFSAIHGKADMASKMGKRLI 398
           L+  A  G+ + A+K+  +LI
Sbjct: 466 LAGYAQTGETEEAAKLFHQLI 486



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 163/340 (47%), Gaps = 18/340 (5%)

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +LN+F+S+L H +L   P++ TL+ +F  CA      L G  +H   +K  L D    G+
Sbjct: 77  ALNLFVSLL-HSSLQ--PDESTLSCVFNICAGSLDGKL-GRQVHCQCVKFGLVDHVSVGT 132

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +LV  Y +  + ++ ++VFDE+ ER+VV + +++ G++ N        +F  M+   V  
Sbjct: 133 SLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLP 192

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             Y VS  + A      +     +H   V  G +  + V   LI  Y + G++ DAR VF
Sbjct: 193 NRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVF 252

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D+ + + + + WN+M+AGY + G    V E+F+ +++ G  P   +F +V+ +      A
Sbjct: 253 DK-MEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKS-----CA 306

Query: 320 GESEKWIERMKVRYKLEPGLEH----YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
              E  + ++     L+ G        T L+ A+ +   ++DA  +   M    +   W 
Sbjct: 307 SLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWT 366

Query: 376 ALLSFSAIHGKADMA----SKMGKRLIDINPYDDSAYVIV 411
           A++S    +G  D A    S+M +  +  N +  SA + V
Sbjct: 367 AMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTV 406


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 198/579 (34%), Positives = 299/579 (51%), Gaps = 38/579 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D   +  ++  Y +   ++ +  +F  +     V W A+IS +  S +  + F    R  
Sbjct: 233 DDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMV 292

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG----SALVHFYSR 147
           +     ++ T  S+   CA+    F+ G S+H   ++L  +  P       +ALV  YS+
Sbjct: 293 SEKVPLDEFTFTSVLSACANAGF-FVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSK 351

Query: 148 FRSPDNAKKVFDEIRERDVVCYGA-------------------------------MIVGF 176
                 AK++FD +  +DVV +                                 M+ G+
Sbjct: 352 GGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGY 411

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
                  D+L +F  MR+ DV    Y  +GA+ A  EL A++  R +H H V  G + + 
Sbjct: 412 VHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASN 471

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
             G  L+  Y K G V+DAR VF   +  L+S++WNAM++   Q G     LELF  +  
Sbjct: 472 SAGNALLTMYAKCGAVNDARLVF-LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVA 530

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            G  PD  SFL +LTA  +AGL  E   + E MK  + + PG +HY  LI  +GR+GR+ 
Sbjct: 531 EGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIG 590

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A  +   MPFEP  ++W A+LS    +G  +  +    +L  + P  D  Y++++N  S
Sbjct: 591 EARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYS 650

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
             GRW + A VRK+M+DR V+KE G SWIEV  K+HVFL GD  H   +++Y  L  +  
Sbjct: 651 AAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGA 710

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
              +LGYVP    +LH++   EK   L+ HSEKLA+ FGL+   P G T+ ++KNLRIC 
Sbjct: 711 RMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLK-LPPGATVTVLKNLRICG 769

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH +  ++S+ V REIVVRDV R+H F +G C+CG+ W
Sbjct: 770 DCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 175/385 (45%), Gaps = 32/385 (8%)

Query: 25  ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-----PNIVSWTALISAHSN--- 76
           A+  ++ D  ++N +++ +++++L + ++ +F+ +       P+  S+TALISA      
Sbjct: 119 AVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHN 178

Query: 77  --SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             +P    +  S+L+    + L     L +L+  C +   ++     L  +  K  L   
Sbjct: 179 LAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDL--- 235

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + +V  Y R    + A+ VF+E+  +  V + AMI G+ Q+    D+  +F  M S
Sbjct: 236 --TWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVS 293

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI------VGTGLIDGYGK 248
             V    +  +  L A A        + +HG  +   L  N +      V   L+  Y K
Sbjct: 294 EKVPLDEFTFTSVLSACANAGFFVHGKSVHGQII--RLQPNFVPEAALPVNNALVTLYSK 351

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G +  A+R+FD  +++ + ++WN +++GY   G     +E+F ++  +    ++ S++ 
Sbjct: 352 GGKIVIAKRIFD-TMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMV 406

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM--- 365
           +++   + GL+ ++ K   +M+    ++P    Y   I+A G  G L+   ++   +   
Sbjct: 407 MVSGYVHGGLSEDALKLFNQMRAE-DVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQC 465

Query: 366 PFEPDAAVWRALLSFSAIHGKADMA 390
            FE   +   ALL+  A  G  + A
Sbjct: 466 GFEASNSAGNALLTMYAKCGAVNDA 490



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 140/327 (42%), Gaps = 50/327 (15%)

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVF-AD 191
           P   ++LV  ++      +A   FD +    RD V + AM+  FA+ S    ++SVF A 
Sbjct: 94  PVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHAL 153

Query: 192 MRSSDVGSTMYCVSGALRAAAEL--AAMEQCRVIHGHAVVSGL----------------- 232
           + S  +    Y  +  + A  ++   A   C  +H   + SG                  
Sbjct: 154 LGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKC 213

Query: 233 -----------------DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
                            D++ +  T ++ GY + G V+ AR VF+E     + + WNAM+
Sbjct: 214 DTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFD-VVWNAMI 272

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG--LAGES-EKWIERMKVR 332
           +GY Q G  +   ELF  +       DE++F +VL+A  NAG  + G+S    I R++  
Sbjct: 273 SGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPN 332

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           +  E  L     L++   + G++  A+RI   M  + D   W  +LS     G  D A +
Sbjct: 333 FVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILSGYIDSGCLDKAVE 391

Query: 393 MGKRLIDINPY--DDSAYVIVANVLSG 417
           + K    + PY  D S  V+V+  + G
Sbjct: 392 VFK----VMPYKNDLSWMVMVSGYVHG 414


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 305/557 (54%), Gaps = 5/557 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  ALK    ++  + +NL   YSK   +  + ++F  +P  + VSWTA+I  +S    
Sbjct: 128 MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 187

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                L+  +        +Q  L S    C +L  A  FG S+HS  +KL      F G+
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALK-ACKFGRSVHSSVVKLGFESDIFVGN 246

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           AL   YS+    ++A  VF    E R+VV Y  +I G+ +  ++   LSVF ++R   + 
Sbjct: 247 ALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE 306

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
              +  S  ++A A  AA+EQ   +H   +    D +  V + L+D YGK G++  A + 
Sbjct: 307 PNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQA 366

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FDE +     IAWN++++ + Q G     ++ F  +  RG  P+  +F+++LT   +AGL
Sbjct: 367 FDE-IGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGL 425

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E   +   M   Y + PG EHY+C+I  +GRAGRL++A+     MPFEP+A  W + L
Sbjct: 426 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 485

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               IHG  +M     ++L+ + P +  A V+++N+ +   +W++V  VR  M+D  V+K
Sbjct: 486 GACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKK 545

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
             G SW++V  K HVF A D  H R   IY KL  L+++ +  GYVP  D +  ++ D  
Sbjct: 546 LPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXM 605

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K + L  HSE++A+AF L+S  P GK + + KNLR+C DCH + K+IS+V  R+I+VRD 
Sbjct: 606 KEKLLHRHSERIAVAFALIS-MPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDN 664

Query: 559 NRYHRFLNGSCTCGDLW 575
           +R+H F +GSC+CGD W
Sbjct: 665 SRFHHFTDGSCSCGDYW 681



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 182/369 (49%), Gaps = 11/369 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPLS--LNIFLSMLRHP 91
           + N+L+  YSK   L ++L+LF+ +P  N+VSWTA+IS  S NS  S  +  F  M    
Sbjct: 42  LTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGM---R 98

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
               +P Q   +S  + CASL  +   G  +H L+LK  +  + F GS L   YS+  + 
Sbjct: 99  ICGEVPTQFAFSSAIRACASLG-SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAM 157

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
            +A KVF+E+  +D V + AMI G+++     ++L  F  M   +V    + +   L A 
Sbjct: 158 FDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGAC 217

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
             L A +  R +H   V  G + ++ VG  L D Y KAG +  A  VF  +    N +++
Sbjct: 218 GALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSY 277

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN-AGLAGESEKWIERMK 330
             ++ GY +       L +F  L  +G  P+E++F +++ A  N A L   ++   + MK
Sbjct: 278 TCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMK 337

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           + +  +P +   + L+   G+ G LE A + A     +P    W +L+S    HG    A
Sbjct: 338 INFDEDPFVS--SILVDMYGKCGLLEHAIQ-AFDEIGDPTEIAWNSLVSVFGQHGLGKDA 394

Query: 391 SKMGKRLID 399
            K  +R++D
Sbjct: 395 IKFFERMVD 403



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 2/243 (0%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  LH+L +        F  + LV+ YS+    D+A K+FD + +R++V + AMI G +Q
Sbjct: 24  GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           NS+  +++  F  MR      T +  S A+RA A L ++E  + +H  A+  G+   + V
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           G+ L D Y K G + DA +VF+E +   + ++W AM+ GY++ G+    L  F  +    
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEE-MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE 202

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
              D++   + L A C A  A +  + +    V+   E  +     L     +AG +E A
Sbjct: 203 VTIDQHVLCSTLGA-CGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESA 261

Query: 359 ERI 361
             +
Sbjct: 262 SNV 264



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 90/192 (46%), Gaps = 3/192 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           ++  A+   + + + +H   + +G      +   L++ Y K G +  A ++FD  +   N
Sbjct: 12  IQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFD-TMPQRN 70

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W AM++G +Q    S  +  F  + + G  P +++F + + A  + G + E  K + 
Sbjct: 71  LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG-SIEMGKQMH 129

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            + +++ +   L   + L     + G + DA ++   MP + D   W A++   +  G+ 
Sbjct: 130 CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDGYSKIGEF 188

Query: 388 DMASKMGKRLID 399
           + A    K++ID
Sbjct: 189 EEALLAFKKMID 200


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 199/565 (35%), Positives = 314/565 (55%), Gaps = 31/565 (5%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPL---SLNIFLSML 88
           +N ++T Y++S     +  LF ++   NI    ++W+A+I+ ++       +L+ F  M+
Sbjct: 328 WNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI 387

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK---LSLHDKP---------F 136
            + +    PN  T+ SL   CASL  A   G+  H+ SLK   LSL +            
Sbjct: 388 LYGSE---PNSVTIISLLSACASLG-ALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLV 443

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
             +AL+  YS+ RS   A+ +F+ I  RER+VV +  MI G+AQ     D+L +F++M S
Sbjct: 444 VHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMIS 503

Query: 195 SD--VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI--VGTGLIDGYGKAG 250
               V    Y +S  L A A L+++   + IH +        + +  V   LID Y K G
Sbjct: 504 KPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCG 563

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V  AR VFD ++   N ++W +MM+GY   G     L++F  ++  GF PD+ SFL +L
Sbjct: 564 DVDTARNVFD-SMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  ++G+  +   + + M+  Y +    +HY C+I  + R+GRL+ A +    MP EP 
Sbjct: 623 YACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPS 682

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           AA+W ALLS   +H   ++A     +L+ +   +D +Y +++N+ +   RW +VA +R++
Sbjct: 683 AAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQL 742

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK   ++K  G SW++ K     F  GDR H  + +IY+ L  L+   + +GYVP  +  
Sbjct: 743 MKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFA 802

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           LH+V D EK   L  HSEKLALA+GL++ +P G  +RI KNLR+C DCH +F YIS++V+
Sbjct: 803 LHDVDDEEKNNLLTEHSEKLALAYGLLTTSP-GCPIRITKNLRVCGDCHSAFIYISKIVD 861

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
            EI+VRD +R+H F NGSC+CG  W
Sbjct: 862 HEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 150/339 (44%), Gaps = 20/339 (5%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHI-PSPNIVSWTALISAHSNS---PLSLNIFLSML 88
           +S+   ++ +Y      S +L +   + PSP  V W  L+ AH        ++ +   ML
Sbjct: 83  KSLGTGVVASYLACGATSDALSVLERVVPSP-AVWWNLLVRAHIEEGRLDRAIGVSCRML 141

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R  T    P+  TL    K C  L  ++  G + H L          F  +ALV  YSR 
Sbjct: 142 RAGTK---PDHFTLPYALKACGELP-SYRSGSAFHGLICCNGFESNVFVCNALVAMYSRS 197

Query: 149 RSPDNAKKVFDEIRER---DVVCYGAMIVGFAQNSRLVDSLSVFADM------RSSDVGS 199
            S ++A  VFDEI  +   DV+ + +++    + S    +L +F++M      ++++  S
Sbjct: 198 GSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERS 257

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            +  +   L A A L A+ Q + IH +A+ +G   +  V   LID Y K G + DA  VF
Sbjct: 258 DIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVF 317

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +  +   + ++WNAM+ GY Q G      ELF  +       D  ++ AV+      G  
Sbjct: 318 NV-MEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYG 376

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
            E+    ++M + Y  EP       L+SA    G L   
Sbjct: 377 QEALDTFQQM-ILYGSEPNSVTIISLLSACASLGALSQG 414



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS---NSPLSLNIFLSMLR 89
           ++N LI  YSK      +  +FN IP    N+V+WT +I  ++   +S  +L +F  M+ 
Sbjct: 444 VHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMIS 503

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--FCGSALVHFYSR 147
            P  +  PN  T++ +   CA LS +   G  +H+   +   ++    F  + L+  YS+
Sbjct: 504 KP-YAVAPNAYTISCILMACAHLS-SLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSK 561

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
               D A+ VFD + +R+ V + +M+ G+  + R  ++L +F  M+ +
Sbjct: 562 CGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKA 609



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 129/323 (39%), Gaps = 32/323 (9%)

Query: 102 LASLFKTCASLSHA-------FLFGLSLHSLSLKLSLHDKPF----------CGSALVHF 144
            ASL K C S++           +GL  +  SL LS+   P            G+ +V  
Sbjct: 34  FASLLKECRSVNTVRQIHQKIIAYGLLSYPASL-LSVSLPPLPSHSYVSPKSLGTGVVAS 92

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           Y    +  +A  V + +     V +  ++    +  RL  ++ V   M  +      + +
Sbjct: 93  YLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTL 152

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE--N 262
             AL+A  EL +       HG    +G + NV V   L+  Y ++G + DA  VFDE   
Sbjct: 153 PYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITR 212

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA--------PDEYSFLAVLTALC 314
             + + I+WN+++A + +  +  T L+LF   EM             D  S + +L A C
Sbjct: 213 KGIDDVISWNSIVAAHVKGSNPRTALDLFS--EMTTIVHEKATNERSDIISIVNILPA-C 269

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            +  A    K I    +R            LI    + G ++DA  +   M F+ D   W
Sbjct: 270 ASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFK-DVVSW 328

Query: 375 RALLSFSAIHGKADMASKMGKRL 397
            A+++     GK   A ++ K +
Sbjct: 329 NAMVTGYTQSGKFGAAFELFKNM 351



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 21  VHARALKSSQADRSIY---NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           +HA   +  + + S+Y   N LI  YSK   +  +  +F+ +P  N VSWT+++S    H
Sbjct: 534 IHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMH 593

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
                +L+IF  M +     F+P+  +   L   C+
Sbjct: 594 GRGKEALDIFDKMQK---AGFVPDDISFLVLLYACS 626


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 197/591 (33%), Positives = 318/591 (53%), Gaps = 42/591 (7%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           ARA+      RS+  +N +++ Y+    +  ++ +F ++   +IVSW  +I+ ++ + L 
Sbjct: 401 ARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLD 460

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L  F  ML   ++   P+  T+ S+   CA+L      G  +HS  L+  +      
Sbjct: 461 GMALKFFSRMLSASSME--PDAFTVTSVLSACANL-RMLKMGKQMHSYILRTGMPCSSQI 517

Query: 138 GSALVHFYSRFRSPDNAKKV---------------------------------FDEIRER 164
            +AL+  Y++  S + A+++                                 FD +  R
Sbjct: 518 MNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNR 577

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
           DV+ + AMIVG+ QN +  +++ +F  M         + ++  L A A LA ++  + IH
Sbjct: 578 DVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIH 637

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
             A+ S  +++V V   +I  Y ++G V  ARRVFD+      +I W +M+   AQ G  
Sbjct: 638 CKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLG 697

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              + LF  +   G  PD  +++ VL+A  +AG   + +++ E+M+  + + P + HY C
Sbjct: 698 EQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYAC 757

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++    RAG L +A      MP  PD  VW +LL+   +   AD+A     +L+ I+P++
Sbjct: 758 MVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHN 817

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
             AY  +ANV S  GRW++ A + K+ KD+ V+KE G SW  V+GKVHVF A D +H + 
Sbjct: 818 SGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQR 877

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
           + IY K AE+ EE ++ G+VP  + +LH+V D  K E L  HSEKLA+AFGL+S  P   
Sbjct: 878 DSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLIS-TPEKT 936

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           TLRI+KNLR+C DCH + K+IS+ V+REI+VRD  R+H F +G C+C D W
Sbjct: 937 TLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 195/452 (43%), Gaps = 80/452 (17%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N+L++ Y+KS  L  +  +F  +P  + VSWT +I   + S    +   + L   +  F
Sbjct: 284 WNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGF 343

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P+Q TL ++  +CA++  A   G  +H   +KL L       +++++ Y +    + A+
Sbjct: 344 APSQFTLTNVLSSCAAME-ACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETAR 402

Query: 156 KVFDEIR-------------------------------ERDVVCYGAMIVGFAQN----- 179
            VF+ ++                               ER +V +  +I G+ QN     
Sbjct: 403 AVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGM 462

Query: 180 -----SRLVDS-------------LSVFADMRSSDVGSTMY---------CVSGALRAA- 211
                SR++ +             LS  A++R   +G  M+         C S  + A  
Sbjct: 463 ALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALI 522

Query: 212 ---AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
              A+  ++E  R I   AVV+  D NVI  T L++GY K G    AR +FD    ++N+
Sbjct: 523 STYAKSGSVETARRIMDQAVVA--DLNVISFTALLEGYVKLGDTKQAREIFD----IMNN 576

Query: 269 ---IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
              IAW AM+ GY Q G     +ELF  + + G  P+ ++  AVL+A C +    +  K 
Sbjct: 577 RDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSA-CASLAYLDYGKQ 635

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           I    +R   E  +     +I+   R+G +  A R+   + +  +   W +++   A HG
Sbjct: 636 IHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHG 695

Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
             + A  + + ++ +    D  ++    VLS 
Sbjct: 696 LGEQAVVLFEEMVRVGVKPD--HITYVGVLSA 725



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 136/309 (44%), Gaps = 19/309 (6%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  ++L+  Y++     +A  VF E+ +RD V +  MIVG  ++ R  D++  F DM S 
Sbjct: 282 FTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSE 341

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
               + + ++  L + A + A    R +H   V  GL   V V   ++  YGK G    A
Sbjct: 342 GFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETA 401

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R VF E + V +  +WN M++ Y  QG     + +F  +  R       S+  ++     
Sbjct: 402 RAVF-ERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIV----SWNTIIAGYNQ 456

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISA-----MGRAGRLEDAERIAMAMPFEPD 370
            GL G + K+  RM     +EP     T ++SA     M + G+   +  +   MP    
Sbjct: 457 NGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPC--S 514

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG---VGRWDEVAEV 427
           + +  AL+S  A  G  + A    +R++D     D   +    +L G   +G   +  E+
Sbjct: 515 SQIMNALISTYAKSGSVETA----RRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREI 570

Query: 428 RKVMKDRRV 436
             +M +R V
Sbjct: 571 FDIMNNRDV 579



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 3/166 (1%)

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           RN      L+  Y K+G + DA  VF E +   ++++W  M+ G  + G     ++ F  
Sbjct: 279 RNAFTWNSLLSLYAKSGRLPDAHVVFAE-MPDRDAVSWTIMIVGLNRSGRFWDAVKTFLD 337

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           +   GFAP +++   VL++ C A  A    + +    V+  L   +     ++   G+ G
Sbjct: 338 MVSEGFAPSQFTLTNVLSS-CAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCG 396

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
             E A  +   M      + W  ++S     G+ ++A  M + +++
Sbjct: 397 DAETARAVFERMQVR-SVSSWNVMVSLYTHQGRMELAVSMFENMVE 441


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 190/553 (34%), Positives = 302/553 (54%), Gaps = 13/553 (2%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIP----SPNIVSWTALISA---HSNSPLSLN 82
           Q D   +N ++  Y+       ++ L + +      P+I++W  L++    + +   +L 
Sbjct: 426 QTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALE 485

Query: 83  IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142
            F    R  ++   PN  T++     C  + +  L G  +H   L+  +      GSAL+
Sbjct: 486 FFQ---RMHSMGMDPNTTTISGALAACGQVRNLKL-GKEIHGYVLRNHIELSTGVGSALI 541

Query: 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
             YS   S + A  VF E+  RDVV + ++I   AQ+ R V++L +  +M  S+V     
Sbjct: 542 SMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTV 601

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
            +  AL A ++LAA+ Q + IH   +  GLD    +   LID YG+ G +  +RR+FD  
Sbjct: 602 TMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDL- 660

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
           +   + ++WN M++ Y   G     + LF      G  P+  +F  +L+A  ++GL  E 
Sbjct: 661 MPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEG 720

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
            K+ + MK  Y ++P +E Y C++  + RAG+  +       MPFEP+AAVW +LL    
Sbjct: 721 WKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACR 780

Query: 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGR 442
           IH   D+A    + L ++ P     YV++AN+ S  GRW++ A++R +MK+R V K  G 
Sbjct: 781 IHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGC 840

Query: 443 SWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREA 502
           SWIEVK K+H F+ GD  H   E I  K+  L  + + +GYVP  + +L +V + EK  +
Sbjct: 841 SWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFS 900

Query: 503 LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562
           L  HSEK+ALAFGL+S    G  LRI+KNLR+C DCH + K+IS+V +R+I++RD  R+H
Sbjct: 901 LCGHSEKIALAFGLIS-TTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFH 959

Query: 563 RFLNGSCTCGDLW 575
            F++G C+CGD W
Sbjct: 960 HFVDGVCSCGDYW 972



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 179/402 (44%), Gaps = 47/402 (11%)

Query: 26  LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-----PNIVSWTALISAHSNSPLS 80
           L   + D+  +N +I+ Y++S     + + F  +       PN+VSWTALI+    +   
Sbjct: 284 LSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYD 343

Query: 81  LNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LHDKPFCG 138
               LS+ R   L  + PN  T+AS    C +LS     G  +H   +K+  L      G
Sbjct: 344 FEA-LSVFRKMVLEGVKPNSITIASAVSACTNLS-LLRHGREIHGYCIKVEELDSDLLVG 401

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV- 197
           ++LV +Y++ RS + A++ F  I++ D+V + AM+ G+A      +++ + ++M+   + 
Sbjct: 402 NSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIE 461

Query: 198 -----------GSTMY-----------------------CVSGALRAAAELAAMEQCRVI 223
                      G T Y                        +SGAL A  ++  ++  + I
Sbjct: 462 PDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEI 521

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           HG+ + + ++ +  VG+ LI  Y     +  A  VF E LS  + + WN++++  AQ G 
Sbjct: 522 HGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSE-LSTRDVVVWNSIISACAQSGR 580

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               L+L   + +     +  + ++ L A C+   A    K I +  +R  L+       
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPA-CSKLAALRQGKEIHQFIIRCGLDTCNFILN 639

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
            LI   GR G ++ + RI   MP + D   W  ++S   +HG
Sbjct: 640 SLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHG 680



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 124/266 (46%), Gaps = 2/266 (0%)

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           AS+ + C  L +    G  +H+  +   +    F GS L+  Y +    ++A+++FD++ 
Sbjct: 93  ASILQKCRKL-YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           ER+V  + A++  +       +++ +F  M +  V    +      +A +EL      + 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           ++ + +  G + N  V   ++D + K G +  ARR F+E +   +   WN M++GY  +G
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEE-IEFKDVFMWNIMVSGYTSKG 270

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
           +    L+    +++ G  PD+ ++ A+++    +G   E+ K+   M      +P +  +
Sbjct: 271 EFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSW 330

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFE 368
           T LI+   + G   +A  +   M  E
Sbjct: 331 TALIAGSEQNGYDFEALSVFRKMVLE 356



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/362 (18%), Positives = 142/362 (39%), Gaps = 47/362 (12%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSF 95
           L+  Y ++  +  + R+F+ +   N+ SWTA++  +    +   ++ +F  M+       
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNE---GV 186

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P+      +FK C+ L + +  G  ++   L +          +++  + +    D A+
Sbjct: 187 RPDHFVFPKVFKACSELKN-YRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIAR 245

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           + F+EI  +DV  +  M+ G+        +L   +DM+                      
Sbjct: 246 RFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMK---------------------- 283

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL----NSIAW 271
                        +SG+  + +    +I GY ++G   +A + F E   +     N ++W
Sbjct: 284 -------------LSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSW 330

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            A++AG  Q G     L +F  + + G  P+  +  + ++A  N  L     +       
Sbjct: 331 TALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK 390

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
             +L+  L     L+    +   +E A R    M  + D   W A+L+  A+ G  + A 
Sbjct: 391 VEELDSDLLVGNSLVDYYAKCRSVEVARR-KFGMIKQTDLVSWNAMLAGYALRGSHEEAI 449

Query: 392 KM 393
           ++
Sbjct: 450 EL 451


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 306/563 (54%), Gaps = 19/563 (3%)

Query: 29  SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPLSLNIF 84
           S  D   +N ++  YS+      ++RLF  +    I    V+W+A IS ++   L     
Sbjct: 291 SVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-------DKPFC 137
               +  +    PN+ TL S+   CAS+  A + G  +H  ++K  +        D+   
Sbjct: 351 GVCRQMLSSGIKPNEVTLISVLSGCASVG-ALMHGKEIHCYAIKYPIDLRKNGHGDENMV 409

Query: 138 GSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            + L+  Y++ +  D A+ +FD +  +ERDVV +  MI G++Q+     +L + ++M   
Sbjct: 410 INQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469

Query: 196 DVGS--TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR-NVIVGTGLIDGYGKAGIV 252
           D  +    + +S AL A A LAA+   + IH +A+ +  +   + V   LID Y K G +
Sbjct: 470 DCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           SDAR VFD N+   N + W ++M GY   G     L +F  +   GF  D  + L VL A
Sbjct: 530 SDARLVFD-NMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYA 588

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++G+  +  ++  RMK  + + PG EHY CL+  +GRAGRL  A R+   MP EP   
Sbjct: 589 CSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPV 648

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW A LS   IHGK ++     +++ ++    D +Y +++N+ +  GRW +V  +R +M+
Sbjct: 649 VWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMR 708

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            + V+K  G SW+E       F  GD+ H   ++IY  L + M+  + +GYVP     LH
Sbjct: 709 HKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALH 768

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V D EK + L+ HSEKLALA+G+++  P+G  +RI KNLR+C DCH +F Y+SR+++ +
Sbjct: 769 DVDDEEKDDLLFEHSEKLALAYGILT-TPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHD 827

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I++RD +R+H F NGSC+C   W
Sbjct: 828 IILRDSSRFHHFKNGSCSCKGYW 850



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 162/314 (51%), Gaps = 9/314 (2%)

Query: 14  TSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN--IVSWTALI 71
           T +  +++H + L       ++ ++LI+ Y     LS+++ L    P  +  +  W +LI
Sbjct: 40  TISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 72  SAHS-NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
            ++  N   +  ++L  L H +LS+ P+  T   +FK C  +S +   G S H+LSL   
Sbjct: 100 RSYGDNGCANKCLYLFGLMH-SLSWTPDNYTFPFVFKACGEIS-SVRCGESAHALSLVTG 157

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                F G+ALV  YSR RS  +A+KVFDE+   DVV + ++I  +A+  +   +L +F+
Sbjct: 158 FISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFS 217

Query: 191 DMRSSDVGSTMYCVS--GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
            M +++ G     ++    L   A L      + +H  AV S + +N+ VG  L+D Y K
Sbjct: 218 RM-TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAK 276

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G++ +A  VF  N+SV + ++WNAM+AGY+Q G     + LF  ++      D  ++ A
Sbjct: 277 CGMMDEANTVF-SNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSA 335

Query: 309 VLTALCNAGLAGES 322
            ++     GL  E+
Sbjct: 336 AISGYAQRGLGYEA 349



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 184/448 (41%), Gaps = 59/448 (13%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPTL 93
           N L+  YS+   LS + ++F+ +   ++VSW ++I +++      ++L +F  M      
Sbjct: 166 NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE--F 223

Query: 94  SFLPNQRTLASLFKTCASL-SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
              P+  TL ++   CASL +H+   G  LH  ++   +    F G+ LV  Y++    D
Sbjct: 224 GCRPDNITLVNVLPPCASLGTHSL--GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMD 281

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS----DVGSTMYCVSGAL 208
            A  VF  +  +DVV + AM+ G++Q  R  D++ +F  M+      DV +    +SG  
Sbjct: 282 EANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYA 341

Query: 209 RAAAELAAMEQCR----------------VIHGHAVVSGL-------------------- 232
           +      A+  CR                V+ G A V  L                    
Sbjct: 342 QRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKN 401

Query: 233 ---DRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVL 288
              D N+++   LID Y K   V  AR +FD  +    + + W  M+ GY+Q GD +  L
Sbjct: 402 GHGDENMVINQ-LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKAL 460

Query: 289 ELFHLL--EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCL 345
           EL   +  E     P+ ++    L A C +  A    K I    +R +     L    CL
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVA-CASLAALRIGKQIHAYALRNQQNAVPLFVSNCL 519

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYD 404
           I    + G + DA R+        +   W +L++   +HG  + A  +   +  I    D
Sbjct: 520 IDMYAKCGSISDA-RLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLD 578

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMK 432
               ++V    S  G  D+  E    MK
Sbjct: 579 GVTLLVVLYACSHSGMIDQGMEYFNRMK 606


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 196/558 (35%), Positives = 323/558 (57%), Gaps = 11/558 (1%)

Query: 22  HARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NS 77
           HA A++S   +  ++   ++  Y K   +  +  +F+ +P+ N VSW A+I  ++   +S
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L +F  M+       + +   LA+L + C  L      G+ +H L +++ L      
Sbjct: 244 REALALFNRMVEEGV--DVTDVSVLAAL-QACGELG-CLDEGMRVHELLVRIGLDSNVSV 299

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  YS+ +  D A  VFDE+  R  V + AMI+G AQN    D++ +F  M+  +V
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               + +   + A A+++   Q R IHG+++   LD++V V T LID Y K G V+ AR 
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARI 419

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F+      + I WNAM+ GY   G     +ELF  ++  G  P+E +FL+VL+A  +AG
Sbjct: 420 LFNSARE-RHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAG 478

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E  ++   MK  Y LEPG+EHY  ++  +GRAG+L++A      MP +P  +V+ A+
Sbjct: 479 LVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAM 538

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    +H   ++A +  +++ ++ P +   +V++AN+ +    W +VA VR  M+   ++
Sbjct: 539 LGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQ 598

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K  G S I++K ++H F +G   H++ ++IY++LA+L+EE + +GYVP  D  +H+V D 
Sbjct: 599 KTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDS-IHDVEDD 657

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            K + L  HSEKLA+AFGL+  AP G T++I KNLR+C DCH + K IS V  REI++RD
Sbjct: 658 VKAQLLNTHSEKLAIAFGLIRTAP-GTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRD 716

Query: 558 VNRYHRFLNGSCTCGDLW 575
           + R+H F +G C+CGD W
Sbjct: 717 IQRFHHFKDGKCSCGDYW 734



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 194/419 (46%), Gaps = 9/419 (2%)

Query: 19  RIVHAR-ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA+ A +   ++      L   Y+K    + + R+F+ +P  + V+W AL++ ++ +
Sbjct: 79  RAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARN 138

Query: 78  PLSLNIFLSMLR-HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            L+      ++R        P+  TL S+     + + A       H+ +++  L +   
Sbjct: 139 GLARMAMEMVVRMQEEEGERPDSITLVSVLPA-CANARALAACREAHAFAIRSGLEELVN 197

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +A++  Y +      A+ VFD +  ++ V + AMI G+AQN    ++L++F  M    
Sbjct: 198 VATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEG 257

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V  T   V  AL+A  EL  +++   +H   V  GLD NV V   LI  Y K   V  A 
Sbjct: 258 VDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLAS 317

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFDE L     ++WNAM+ G AQ G     + LF  +++    PD ++ ++V+ AL + 
Sbjct: 318 HVFDE-LDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADI 376

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               ++ +WI    +R  L+  +   T LI    + GR+  A RI      E     W A
Sbjct: 377 SDPLQA-RWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIA-RILFNSARERHVITWNA 434

Query: 377 LLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           ++     HG    A ++ + +  I I P +++ ++ V +  S  G  DE  E    MK+
Sbjct: 435 MIHGYGSHGFGKAAVELFEEMKSIGIVP-NETTFLSVLSACSHAGLVDEGREYFTSMKE 492



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 200/426 (46%), Gaps = 22/426 (5%)

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           +A S+ P +L  F++M    +    P  RT  SL K CA+       G ++H+      +
Sbjct: 35  AARSDLPAALAAFVAM---SSAGAPPVLRTFTSLLKLCAARGD-LATGRAVHAQLAARGI 90

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN--SRLVDSLSVF 189
             +    +AL + Y++ R P +A++VFD +  RD V + A++ G+A+N  +R+   + V 
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
                 +   ++  VS  L A A   A+  CR  H  A+ SGL+  V V T ++D Y K 
Sbjct: 151 MQEEEGERPDSITLVS-VLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKC 209

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  AR VFD  +   NS++WNAM+ GYAQ GD    L LF+ +   G    + S LA 
Sbjct: 210 GDIRAARVVFDW-MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAA 268

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A    G   E  + +  + VR  L+  +     LI+   +  R++ A  +   +    
Sbjct: 269 LQACGELGCLDEGMR-VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRT 327

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
             + W A++   A +G ++ A ++  R+   N   DS + +V+ + +       +A++  
Sbjct: 328 QVS-WNAMILGCAQNGCSEDAVRLFTRMQLENVKPDS-FTLVSVIPA-------LADISD 378

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
            ++ R +     R  + +   V+V  A   M+ +   +   +A ++    R  +V  W+ 
Sbjct: 379 PLQARWIHGYSIR--LHLDQDVYVLTALIDMYAKCGRV--NIARILFNSARERHVITWNA 434

Query: 490 MLHNVG 495
           M+H  G
Sbjct: 435 MIHGYG 440


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/558 (35%), Positives = 323/558 (57%), Gaps = 11/558 (1%)

Query: 22  HARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NS 77
           HA A++S   +  ++   ++  Y K   +  +  +F+ +P+ N VSW A+I  ++   +S
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L +F  M+       + +   LA+L + C  L      G+ +H L +++ L      
Sbjct: 244 REALALFNRMVEEGV--DVTDVSVLAAL-QACGELG-CLDEGMRVHELLVRIGLDSNVSV 299

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  YS+ +  D A  VFDE+  R  V + AMI+G AQN    D++ +F  M+  +V
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               + +   + A A+++   Q R IHG+++   LD++V V T LID Y K G V+ AR 
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARI 419

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F+      + I WNAM+ GY   G     +ELF  ++  G  P+E +FL+VL+A  +AG
Sbjct: 420 LFNSARE-RHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAG 478

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E  ++   MK  Y LEPG+EHY  ++  +GRAG+L++A      MP +P  +V+ A+
Sbjct: 479 LVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAM 538

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    +H   ++A +  +++ ++ P +   +V++AN+ +    W +VA VR  M+   ++
Sbjct: 539 LGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQ 598

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K  G S I++K ++H F +G   H++ ++IY++LA+L+EE + +GYVP  D  +H+V D 
Sbjct: 599 KTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDS-IHDVEDD 657

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            K + L  HSEKLA+AFGL+  AP G T++I KNLR+C DCH + K IS V  REI++RD
Sbjct: 658 VKAQLLNTHSEKLAIAFGLIRTAP-GTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRD 716

Query: 558 VNRYHRFLNGSCTCGDLW 575
           + R+H F +G C+CGD W
Sbjct: 717 IQRFHHFKDGKCSCGDYW 734



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 194/419 (46%), Gaps = 9/419 (2%)

Query: 19  RIVHAR-ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA+ A +   ++      L   Y+K    + + R+F+ +P  + V+W AL++ ++ +
Sbjct: 79  RAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARN 138

Query: 78  PLSLNIFLSMLR-HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            L+      ++R        P+  TL S+     + + A       H+ +++  L +   
Sbjct: 139 GLARMAMEMVVRMQEEEGERPDSITLVSVLPA-CANARALAACREAHAFAIRSGLEELVN 197

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +A++  Y +      A+ VFD +  ++ V + AMI G+AQN    ++L++F  M    
Sbjct: 198 VATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEG 257

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V  T   V  AL+A  EL  +++   +H   V  GLD NV V   LI  Y K   V  A 
Sbjct: 258 VDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLAS 317

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFDE L     ++WNAM+ G AQ G     + LF  +++    PD ++ ++V+ AL + 
Sbjct: 318 HVFDE-LDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADI 376

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               ++ +WI    +R  L+  +   T LI    + GR+  A RI      E     W A
Sbjct: 377 SDPLQA-RWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIA-RILFNSARERHVITWNA 434

Query: 377 LLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           ++     HG    A ++ + +  I I P +++ ++ V +  S  G  DE  E    MK+
Sbjct: 435 MIHGYGSHGFGKAAVELFEEMKSIGIVP-NETTFLSVLSACSHAGLVDEGREYFTSMKE 492



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 198/423 (46%), Gaps = 22/423 (5%)

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           S+ P +L  F++M    +    P  RT  SL K CA+       G ++H+      +  +
Sbjct: 38  SDLPAALAAFVAM---SSAGAPPVLRTFTSLLKLCAARGD-LATGRAVHAQLAARGIDSE 93

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN--SRLVDSLSVFADM 192
               +AL + Y++ R P +A++VFD +  RD V + A++ G+A+N  +R+   + V    
Sbjct: 94  ALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQE 153

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
              +   ++  VS  L A A   A+  CR  H  A+ SGL+  V V T ++D Y K G +
Sbjct: 154 EEGERPDSITLVS-VLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDI 212

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD  +   NS++WNAM+ GYAQ GD    L LF+ +   G    + S LA L A
Sbjct: 213 RAARVVFDW-MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQA 271

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
               G   E  + +  + VR  L+  +     LI+   +  R++ A  +   +      +
Sbjct: 272 CGELGCLDEGMR-VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVS 330

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            W A++   A +G ++ A ++  R+   N   DS + +V+ + +       +A++   ++
Sbjct: 331 -WNAMILGCAQNGCSEDAVRLFTRMQLENVKPDS-FTLVSVIPA-------LADISDPLQ 381

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            R +     R  + +   V+V  A   M+ +   +   +A ++    R  +V  W+ M+H
Sbjct: 382 ARWIHGYSIR--LHLDQDVYVLTALIDMYAKCGRV--NIARILFNSARERHVITWNAMIH 437

Query: 493 NVG 495
             G
Sbjct: 438 GYG 440


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 177/522 (33%), Positives = 290/522 (55%), Gaps = 3/522 (0%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
           ++F  +P  ++VSW  +I+ ++ + L       +      +  P+  TL+S+    A  +
Sbjct: 194 KIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE-N 252

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
                G  +H  S++  L    +  S+L+  Y++     ++ +VF  + ERD + + ++I
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
            G  QN    + L  F  M  + +    Y  S  + A A L  +   + +HG+   +G D
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
            N+ + + L+D Y K G +  A+++FD  + + + ++W AM+ G A  G     +ELF  
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDR-MRLRDMVSWTAMIMGCALHGQAPDAIELFEQ 431

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           +E  G  P+  +F+AVLTA  + GL  E+ K+   M   + + PG+EHY  +   +GRAG
Sbjct: 432 METEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAG 491

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           RLE+A      M   P  ++W  LLS   +H   DMA K+  R+++++P +  AY+++AN
Sbjct: 492 RLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLAN 551

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + S   RW E A+ R  M+   +RK    SWIEVK KV+ F+AGD  H   E I   +  
Sbjct: 552 IYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEV 611

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L+E  E+ GYVP   E+ H+V + +K+  +  HSE+LA+ FG+++  P G T+R+ KNLR
Sbjct: 612 LVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIIN-TPAGMTIRVTKNLR 670

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +C DCH + K+IS++V REIVVRD +R+H F NG+C+CGD W
Sbjct: 671 VCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 209/456 (45%), Gaps = 45/456 (9%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           L + P    + +  + +HA+ LK   +     + L++ YS  NLL  SLRLFN I  P  
Sbjct: 12  LLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPA 71

Query: 65  VSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
           ++W ++I  +++  L   SL  F+ ML        P+     S+ K+CA L    L G S
Sbjct: 72  LAWKSVIRCYTSHGLPHQSLGSFIGML---ASGLYPDHNVFPSVLKSCALLMDLNL-GES 127

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFR-------------------------------- 149
           LH   +++ L    + G+AL++ YS+ R                                
Sbjct: 128 LHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL 187

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           S D+ +K+F+ + E+D+V +  +I G A+N    ++L +  +M  +++    + +S  L 
Sbjct: 188 SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLP 247

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
             AE   + + + IHG ++  GLD ++ V + LID Y K   V+D+ RVF   L+  + I
Sbjct: 248 LIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL-LTERDGI 306

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +WN+++AG  Q G     L  F  + M    P  YSF +++ A C         K +   
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPA-CAHLTTLHLGKQLHGY 365

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
             R   +  +   + L+    + G +  A++I   M    D   W A++   A+HG+A  
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQAPD 424

Query: 390 ASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDE 423
           A ++ +++    I P +  A++ V    S  G  DE
Sbjct: 425 AIELFEQMETEGIKP-NHVAFMAVLTACSHGGLVDE 459


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/550 (35%), Positives = 303/550 (55%), Gaps = 16/550 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA---HSNSPLSLNIFLSM 87
           D++I   L+  YSK   +  +LRLF  I    N+VSWTA+IS    +     ++++F  M
Sbjct: 329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM 388

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
            R       PN+ T + +      +S +      +H+  +K +       G+AL+  Y +
Sbjct: 389 KRK---GVRPNEFTYSVILTALPVISPS-----EVHAQVVKTNYERSSTVGTALLDAYVK 440

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
               + A KVF  I ++D+V + AM+ G+AQ      ++ +F ++    +    +  S  
Sbjct: 441 LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSI 500

Query: 208 LRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           L   AA  A+M Q +  HG A+ S LD ++ V + L+  Y K G +  A  VF       
Sbjct: 501 LNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK- 559

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + ++WN+M++GYAQ G     L++F  ++ R    D  +F+ V  A  +AGL  E EK+ 
Sbjct: 560 DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYF 619

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           + M    K+ P  EH +C++    RAG+LE A ++   MP    + +WR +L+   +H K
Sbjct: 620 DIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKK 679

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++     +++I + P D +AYV+++N+ +  G W E A+VRK+M +R V+KE G SWIE
Sbjct: 680 TELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIE 739

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           VK K + FLAGDR H   + IY KL +L    + LGY P    +L ++ D  K   L  H
Sbjct: 740 VKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQH 799

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF-L 565
           SE+LA+AFGL++  P+G  L I+KNLR+C DCH   K I+++ EREIVVRD NR+H F  
Sbjct: 800 SERLAIAFGLIA-TPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSS 858

Query: 566 NGSCTCGDLW 575
           +G C+CGD W
Sbjct: 859 DGVCSCGDFW 868



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 181/376 (48%), Gaps = 8/376 (2%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H + +K    D  S+  +L+  Y K +      ++F+ +   N+V+WT LIS ++ +
Sbjct: 113 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARN 172

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            ++  +    +R       PN  T A+     A        GL +H++ +K  L      
Sbjct: 173 SMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGR-GLQVHTVVVKNGLDKTIPV 231

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L++ Y +  +   A+ +FD+   + VV + +MI G+A N   +++L +F  MR + V
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             +    +  ++  A L  +     +H   V  G   +  + T L+  Y K   + DA R
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F E   V N ++W AM++G+ Q   +   ++LF  ++ +G  P+E+++  +LTAL    
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL---P 408

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +   SE   + +K  Y+    +   T L+ A  + G++E+A ++   +  + D   W A+
Sbjct: 409 VISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAM 465

Query: 378 LSFSAIHGKADMASKM 393
           L+  A  G+ + A KM
Sbjct: 466 LAGYAQTGETEAAIKM 481



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 19/372 (5%)

Query: 55  LFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           LF+  P  +  S+ +L+   S    +  +  +FL++ R   L    +    +S+ K  A+
Sbjct: 49  LFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHR---LGMEMDCSIFSSVLKVSAT 105

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
           L    LFG  LH   +K    D    G++LV  Y +  +  + +KVFDE++ER+VV +  
Sbjct: 106 LCDE-LFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTT 164

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           +I G+A+NS   + L++F  M++       +  + AL   AE     +   +H   V +G
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           LD+ + V   LI+ Y K G V  AR +FD+   V + + WN+M++GYA  G     L +F
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKT-EVKSVVTWNSMISGYAANGLDLEALGMF 283

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK---VRYKLEPGLEHYTCLISA 348
           + + +      E SF +V+    N     +  ++ E++    V+Y         T L+ A
Sbjct: 284 YSMRLNYVRLSESSFASVIKLCANL----KELRFTEQLHCSVVKYGFLFDQNIRTALMVA 339

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLS-FSAIHGK---ADMASKMGKRLIDINPYD 404
             +   + DA R+   +    +   W A++S F    GK    D+ S+M ++ +  N + 
Sbjct: 340 YSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399

Query: 405 DSAYVIVANVLS 416
            S  +    V+S
Sbjct: 400 YSVILTALPVIS 411


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/577 (33%), Positives = 321/577 (55%), Gaps = 24/577 (4%)

Query: 12  QNTSTDPRIVHARALKSSQ-------ADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSP 62
             T+ D R++H       Q       A   I+  N+L++ Y+K  LL  +LRLF+ +P  
Sbjct: 85  HGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPER 144

Query: 63  NIVSWTALISAHSNS----PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           N+V+WT +++A +N+      +L   ++M R       PN  T +S+   C +       
Sbjct: 145 NVVTWTTVVAALANADGRKEEALRFLVAMWRD---GVAPNAYTFSSVLGACGTPG----V 197

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
             +LH+ ++K+ L    F  S+L+  Y +    D  ++VFDE+  RD+V + ++I GFAQ
Sbjct: 198 LAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQ 257

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           +   V ++ +F  M+ +   +    ++  LRA   +  +E  R +H H  V   +R++I+
Sbjct: 258 SGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAH--VLKYERDLIL 315

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
              L+D Y K G + DA  +F   +   + I+W+ M++G AQ G  +  L +F L++  G
Sbjct: 316 HNALLDMYCKCGSLEDAEALF-HRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEG 374

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
            AP+  + + VL A  +AGL  +   +   MK  + ++P  EH+ C++  +GRAG+L++A
Sbjct: 375 VAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEA 434

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
                 M  EPDA +WR LL    +H   ++A+   + ++ + P D  A V+++N  + +
Sbjct: 435 VEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADL 494

Query: 419 GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC 478
            +W +  +  K M+DR ++KE GRSWIE++  VHVF+AGD  H  ++ I  +L  L+   
Sbjct: 495 RQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGRI 554

Query: 479 ERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDC 538
             LGYVP  + +L ++   +K + L YHSEK+A+AFG +  A  GK +RI+KNLRIC DC
Sbjct: 555 SALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMH-AVGGKPIRIMKNLRICGDC 613

Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           H   K +S+   R I++RD  R+H F +G+C+CGD W
Sbjct: 614 HAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 190/540 (35%), Positives = 307/540 (56%), Gaps = 8/540 (1%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSF 95
           L+  Y+K   +  ++R+F+ +P  N+VSW ++I    ++ L   ++ +F  +LR  T+  
Sbjct: 51  LVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTV-- 108

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           +PN+ +++S+   CA++     FG  +H + +K  L    +  ++L+  Y + R  D   
Sbjct: 109 IPNEVSVSSVLSACANMG-GLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGV 167

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           K+F  + +RDVV +  +++GF QN +  ++ + F  MR   +       S  L ++A LA
Sbjct: 168 KLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLA 227

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+ Q   IH   +  G  +N+ +   LI  Y K G + DA +VF E +   N I+W AM+
Sbjct: 228 ALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVF-EGIEDHNVISWTAMI 286

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           + Y   G  + V+ELF  +   G  P   +F+ VL+A  + G   E       MK  + +
Sbjct: 287 SAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDM 346

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
            PG EHY C++  +GRAG L++A+R   +MP +P  +VW ALL     +G   M  +  +
Sbjct: 347 NPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAE 406

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
           RL ++ PY+   YV++AN+ +  GR +E  EVR++M    VRKE G SWI+VK    VF 
Sbjct: 407 RLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFT 466

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
           A DR H  +++IY  L +L +  ++ GYV   + + +++ + E+ + LWYHSEKLALAFG
Sbjct: 467 AHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFG 526

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           L++  P    +RI KNLR C  CH   K  S++ +REI+VRD+NR+HRF +G C+CGD W
Sbjct: 527 LLT-LPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 150/337 (44%), Gaps = 22/337 (6%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PNQ T +S+    A+ +   L G  LHSL  K       F G+ALV  Y++     +A +
Sbjct: 8   PNQFTFSSILSASAA-TMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVR 66

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD-MRSSDVGSTMYCVSGALRAAAELA 215
           VFD++ ER++V + +MIVGF  N+    ++ VF D +R   V      VS  L A A + 
Sbjct: 67  VFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMG 126

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA----- 270
            +   R +HG  V  GL     V   L+D Y K        R FDE + +   +      
Sbjct: 127 GLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKC-------RFFDEGVKLFQCVGDRDVV 179

Query: 271 -WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE-KWIER 328
            WN ++ G+ Q          F ++   G  PDE SF  VL +  +A LA   +   I  
Sbjct: 180 TWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHS--SASLAALHQGTAIHD 237

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
             ++      +     LI+   + G L DA ++   +  + +   W A++S   +HG A+
Sbjct: 238 QIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISAYQLHGCAN 296

Query: 389 MASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDE 423
              ++ + ++   I P     +V V +  S  GR +E
Sbjct: 297 QVIELFEHMLSEGIEP-SHVTFVCVLSACSHTGRVEE 332



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 125/301 (41%), Gaps = 20/301 (6%)

Query: 19  RIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH   +K      + + N+L+  Y K       ++LF  +   ++V+W  L+     +
Sbjct: 132 RQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQN 191

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                + N F  M R      LP++ + +++  + ASL+ A   G ++H   +KL     
Sbjct: 192 DKFEEACNYFWVMRRE---GILPDEASFSTVLHSSASLA-ALHQGTAIHDQIIKLGYVKN 247

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
                +L+  Y++  S  +A +VF+ I + +V+ + AMI  +  +      + +F  M S
Sbjct: 248 MCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLS 307

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYGK 248
             +  +       L A +    +E+     G A  + + +   +  G      ++D  G+
Sbjct: 308 EGIEPSHVTFVCVLSACSHTGRVEE-----GLAHFNSMKKIHDMNPGPEHYACMVDLLGR 362

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFL 307
           AG + +A+R  +          W A++    + G+     E    L EM  + P  Y  L
Sbjct: 363 AGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLL 422

Query: 308 A 308
           A
Sbjct: 423 A 423



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR S      +  S  L A+A    +   + +H      G D N+ VGT L+D Y K   
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVL 310
           +  A RVFD+ +   N ++WN+M+ G+         + +F  +L  +   P+E S  +VL
Sbjct: 61  MHSAVRVFDQ-MPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVL 119

Query: 311 TALCNAG 317
           +A  N G
Sbjct: 120 SACANMG 126


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/564 (34%), Positives = 301/564 (53%), Gaps = 42/564 (7%)

Query: 46  SNLLSYSLRLFNHIPSPNIVSWTALISAHSNS--PLSLNIFLSMLRHPTLSFLPNQRTLA 103
           S  L Y+  +FN IP+P   +  ++I  ++N   P    +F  ++    L   P++ T  
Sbjct: 25  SGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLD--PDRFTFP 82

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           SLFK+C  L      G  LH  S KL      +  + L++ YS      +A+KVFD++  
Sbjct: 83  SLFKSCGVLCE----GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVN 138

Query: 164 RDVV--------------------------------CYGAMIVGFAQNSRLVDSLSVFAD 191
           + VV                                C+  MI G  ++S   ++LS+F +
Sbjct: 139 KSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNE 198

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+ S V      ++  L A   L A+E  + +H +     ++ +V +GT L+D Y K G 
Sbjct: 199 MQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGS 258

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  A RVF E +   + + W A++ G A  G     LELFH ++M    PD  +F+ VL 
Sbjct: 259 IESAMRVFQE-MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLA 317

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  +AGL  E   +   M  +Y ++P +EHY C++  +GRAGR+ +AE +   MP  PD 
Sbjct: 318 ACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDY 377

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            V   LLS   IHG   +A +  ++LI+++P +   YV+++N+ S +  W+   ++R++M
Sbjct: 378 FVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELM 437

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
            +R ++K  G S IEV G VH F+ GD  H ++ +IY  L ++M   +  GYVP   E+L
Sbjct: 438 VERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVL 497

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            ++ ++EK   L  HSEKLA+AFGL+S  P G  +R+VKNLR+C DCH + K+IS V  R
Sbjct: 498 FDMDEKEKENELSLHSEKLAIAFGLLSTTP-GTPIRVVKNLRVCSDCHSAMKFISEVYNR 556

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD NR+H F  GSC+C D W
Sbjct: 557 EIIVRDRNRFHHFTKGSCSCRDFW 580



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 13/245 (5%)

Query: 20  IVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIP-SPNIVSWTALISAH-- 74
           +V AR +     ++S+  +  +I  Y++ +L   +++LF  +  + N+  W  +I+ H  
Sbjct: 126 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVE 185

Query: 75  -SNSPLSLNIFLSMLRHPTLSFLPNQR-TLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            S+   +L++F  M     LS +   + T+ASL   C  L  A   G  LH    K  + 
Sbjct: 186 DSDYEEALSLFNEM----QLSGVKGDKVTMASLLIACTHLG-ALELGKWLHVYIEKEKIE 240

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                G+ALV  Y++  S ++A +VF E+ E+DV+ + A+IVG A   + + +L +F +M
Sbjct: 241 VDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEM 300

Query: 193 RSSDVGSTMYCVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           + S+V        G L A +    + E     +      G+  ++     ++D  G+AG 
Sbjct: 301 QMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGR 360

Query: 252 VSDAR 256
           +++A 
Sbjct: 361 IAEAE 365


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/522 (33%), Positives = 302/522 (57%), Gaps = 3/522 (0%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
           R+F  +P  ++VS+  +I+ ++ S +  +    +    T    P+  TL+S+    +   
Sbjct: 197 RVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYV 256

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
              + G  +H   ++  +    + GS+LV  Y++    +++++VF  +  RD + + +++
Sbjct: 257 DV-IKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315

Query: 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
            G+ QN R  ++L +F  M ++ V       S  + A A LA +   + +HG+ +  G  
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
            N+ + + L+D Y K G +  AR++FD  ++VL+ ++W A++ G+A  G     + LF  
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDR-MNVLDEVSWTAIIMGHALHGHGHEAVSLFEE 434

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           ++ +G  P++ +F+AVLTA  + GL  E+  +   M   Y L   LEHY  +   +GRAG
Sbjct: 435 MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAG 494

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           +LE+A      M  EP  +VW  LLS  ++H   ++A K+ +++  ++  +  AYV++ N
Sbjct: 495 KLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCN 554

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + +  GRW E+A++R  M+ + +RK+   SWIE+K K H F++GDR H   + I   L  
Sbjct: 555 MYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKA 614

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           +ME+ E+ GYV     +LH+V +  KRE L+ HSE+LA+AFG+++  P G T+R+ KN+R
Sbjct: 615 VMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEP-GTTIRVTKNIR 673

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IC DCH + K+IS++ EREI+VRD +R+H F  G+C+CGD W
Sbjct: 674 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/457 (22%), Positives = 202/457 (44%), Gaps = 43/457 (9%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           L + P    + +  + +HA+ +++     +  + +I+ Y+   LL  +L LF  + SP +
Sbjct: 11  LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPV 70

Query: 65  VSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
           ++W ++I   ++  L      S +        P+     S+ K+C ++     FG S+H 
Sbjct: 71  LAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSC-TMMMDLRFGESVHG 129

Query: 125 LSLKLSLHDKPFCGSALVHFYSRF--------------RSP------------------- 151
             ++L +    + G+AL++ Y++                 P                   
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189

Query: 152 ---DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              D+ ++VF+ +  +DVV Y  +I G+AQ+    D+L +  +M ++D+    + +S  L
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
              +E   + + + IHG+ +  G+D +V +G+ L+D Y K+  + D+ RVF   L   + 
Sbjct: 250 PIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSR-LYCRDG 308

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           I+WN+++AGY Q G  +  L LF  +      P   +F +V+ A C         K +  
Sbjct: 309 ISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPA-CAHLATLHLGKQLHG 367

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
             +R      +   + L+    + G ++ A +I   M    D   W A++   A+HG   
Sbjct: 368 YVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALHGHGH 426

Query: 389 MASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDE 423
            A  + + +    + P +  A+V V    S VG  DE
Sbjct: 427 EAVSLFEEMKRQGVKP-NQVAFVAVLTACSHVGLVDE 462



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 139/313 (44%), Gaps = 15/313 (4%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNI 83
           K   +D  I ++L+  Y+KS  +  S R+F+ +   + +SW +L++ +  +     +L +
Sbjct: 271 KGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRL 330

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M+   T    P     +S+   CA L+   L G  LH   L+       F  SALV 
Sbjct: 331 FRQMV---TAKVKPGAVAFSSVIPACAHLATLHL-GKQLHGYVLRGGFGSNIFIASALVD 386

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            YS+  +   A+K+FD +   D V + A+I+G A +    +++S+F +M+   V      
Sbjct: 387 MYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVA 446

Query: 204 VSGALRAAAELAAMEQC-RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
               L A + +  +++     +    V GL++ +     + D  G+AG + +A     + 
Sbjct: 447 FVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKM 506

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
                   W+ +++  +   +    LEL   +  + F  D  + +     +CN  +   +
Sbjct: 507 CVEPTGSVWSTLLSSCSVHKN----LELAEKVAEKIFTVDSEN-MGAYVLMCN--MYASN 559

Query: 323 EKWIERMKVRYKL 335
            +W E  K+R ++
Sbjct: 560 GRWKEMAKLRLRM 572


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 314/563 (55%), Gaps = 21/563 (3%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPLSLNIFL 85
           + D   +N ++T YS+      +L LF  +   +I    ++W+A+I+ ++         L
Sbjct: 297 KKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEA-L 355

Query: 86  SMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLK----LSLHDKP---FC 137
            + R   L  L PN  TLASL   CAS+  A L+G   H+  +K    L+ +DK      
Sbjct: 356 DVFRQMQLYGLEPNVVTLASLLSGCASVG-ALLYGKQTHAYVIKNILNLNWNDKEDDLLV 414

Query: 138 GSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADM--R 193
            + L+  Y++ +S   A+ +FD I  ++++VV +  MI G+AQ+    D+L +FA +  +
Sbjct: 415 LNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQ 474

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIV 252
            + +    + +S AL A A L  +   R +H +A+ +  +  V+ VG  LID Y K+G +
Sbjct: 475 KTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDI 534

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD N+ + N ++W ++M GY   G     L LF  ++  GFA D  +FL VL A
Sbjct: 535 DAARAVFD-NMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYA 593

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++G+  +   +   M   + + PG EHY C++  +GRAGRL +A  +   M  EP A 
Sbjct: 594 CSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAV 653

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALLS S IH   ++      +L ++   +D +Y +++N+ +   RW +VA +R +MK
Sbjct: 654 VWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMK 713

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
              +RK  G SWI+ K     F  GDR H  +E IY  L +L++  + +GYVP     LH
Sbjct: 714 HTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALH 773

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V D EK + L+ HSEKLA+A+G+++ AP G+ +RI KNLRIC DCH +  YIS +++ E
Sbjct: 774 DVDDEEKGDLLFEHSEKLAVAYGILTTAP-GQPIRIHKNLRICGDCHSALTYISMIIDHE 832

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IV+RD +R+H F  GSC+C   W
Sbjct: 833 IVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 199/472 (42%), Gaps = 67/472 (14%)

Query: 9   PQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIV 65
           P  ++ ++   IV A  L S   +  I N+++  Y +   L  + ++F+ +      +IV
Sbjct: 141 PSLRHGASVHAIVCANGLGS---NVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIV 197

Query: 66  SWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
           SW ++++A+     S  +L I   M  H +L   P+  TL ++   CAS+  A   G  +
Sbjct: 198 SWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASV-FALQHGKQV 256

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           H  S++  L D  F G+ALV  Y++    + A KVF+ I+++DVV + AM+ G++Q    
Sbjct: 257 HGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSF 316

Query: 183 VDSLSVFADMRSSDVG-----------------------------------STMYCVSGA 207
             +LS+F  M+  D+                                      +  ++  
Sbjct: 317 DSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASL 376

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRN-------VIVGTGLIDGYGKAGIVSDARRVFD 260
           L   A + A+   +  H + + + L+ N       ++V  GLID Y K      AR +FD
Sbjct: 377 LSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFD 436

Query: 261 E-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL--EMRGFAPDEYSFLAVLTALCNAG 317
                  N + W  M+ GYAQ G+ +  L+LF  +  +     P+ ++    L A    G
Sbjct: 437 SIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLG 496

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYT-----CLISAMGRAGRLEDAERIAMAMPFEPDAA 372
                E  + R    Y L    E        CLI    ++G ++ A  +   M    +  
Sbjct: 497 -----ELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVV 550

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDE 423
            W +L++   +HG+ + A  +  ++  +    D   +++V    S  G  D+
Sbjct: 551 SWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQ 602



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 141/338 (41%), Gaps = 22/338 (6%)

Query: 70  LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
           +I  H  S LS  +  S+  + T +  P    L SL + C +L +A L          ++
Sbjct: 1   MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKL-------AHQQI 53

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLS 187
            +H      S  V  Y    +   A  +   +      V  + A+I    +   L D+L 
Sbjct: 54  FVHGFTEMFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLG 113

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
            +  M+        Y     L+A  E+ ++     +H     +GL  NV +   ++  YG
Sbjct: 114 FYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYG 173

Query: 248 KAGIVSDARRVFDENL--SVLNSIAWNAMMAGYAQQGDQSTVLEL------FHLLEMRGF 299
           + G + DA ++FDE L   + + ++WN+++A Y Q G   T L +       + L++R  
Sbjct: 174 RCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLR-- 231

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
            PD  + + +L A C +  A +  K +    VR  L   +     L+S   +  ++ +A 
Sbjct: 232 -PDAITLVNILPA-CASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEAN 289

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           ++   +  + D   W A+++  +  G  D A  + K +
Sbjct: 290 KVFEGIK-KKDVVSWNAMVTGYSQIGSFDSALSLFKMM 326


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 309/563 (54%), Gaps = 12/563 (2%)

Query: 19  RIVHARALKSSQADRS---IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH- 74
           + +HA  +++ +  +S   +   LI  Y K   L+Y+ R+F+ +   +I+SWTA+I+A+ 
Sbjct: 245 KAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYI 304

Query: 75  --SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
             +N    + +F+ ML        PN+ T+ SL K C + + A   G  LH+ +L+    
Sbjct: 305 HCNNLNEGVRLFVKMLGE---GMFPNEITMLSLVKECGT-AGALELGKLLHAFTLRNGFT 360

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                 +A +  Y +     +A+ VFD  + +D++ + AMI  +AQN+ + ++  +F  M
Sbjct: 361 LSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHM 420

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
               +      +   L   A+  ++E  + IH +    G+  ++I+ T  +D Y   G +
Sbjct: 421 TGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDI 480

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A R+F E      S+ WNAM++G+A  G     LELF  +E  G  P++ +F+  L A
Sbjct: 481 DTAHRLFAEATDRDISM-WNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHA 539

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++GL  E ++   +M   +   P +EHY C++  +GRAG L++A  +  +MP  P+ A
Sbjct: 540 CSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIA 599

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           V+ + L+   +H    +     K+ + + P+     V+++N+ +   RW +VA +R+ MK
Sbjct: 600 VFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMK 659

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           D  + KE G S IEV G +H F+ GDR H   + +Y  + E+ E+ E  GY P    +LH
Sbjct: 660 DEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLH 719

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           N+   +K  AL YHSEKLA+A+GL+S AP G  +RIVKNLR+C DCH + K +S++  RE
Sbjct: 720 NIDKEKKVSALNYHSEKLAMAYGLISTAP-GVPIRIVKNLRVCDDCHNATKLLSKIYGRE 778

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+H F  GSC+C D W
Sbjct: 779 IIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 187/391 (47%), Gaps = 13/391 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   +K+    D  + N LI  YS+   L+ +  LF+ I + ++VSW+ +I ++  S L
Sbjct: 146 VHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGL 205

Query: 80  SLNIFLSMLRH-PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL---KLSLHDKP 135
            L+  L +LR    +   P++  + S+    A L+   L G ++H+  +   K      P
Sbjct: 206 -LDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKL-GKAMHAYVMRNGKCGKSGVP 263

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            C +AL+  Y +  +   A++VFD + +  ++ + AMI  +   + L + + +F  M   
Sbjct: 264 LC-TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGE 322

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +      +   ++      A+E  +++H   + +G   ++++ T  ID YGK G V  A
Sbjct: 323 GMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSA 382

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R VFD +    + + W+AM++ YAQ        ++F  +   G  P+E + +++L     
Sbjct: 383 RSVFD-SFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAK 441

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AG + E  KWI     +  ++  +   T  +      G ++ A R+  A   + D ++W 
Sbjct: 442 AG-SLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRL-FAEATDRDISMWN 499

Query: 376 ALLSFSAIHGKADMASKMGKRL--IDINPYD 404
           A++S  A+HG  + A ++ + +  + + P D
Sbjct: 500 AMISGFAMHGHGEAALELFEEMEALGVTPND 530



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 134/292 (45%), Gaps = 6/292 (2%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
            + S+ K C  L  +FL G  +H   +K   H   F  +AL+  YS   S   A+ +FD+
Sbjct: 126 VIPSVLKACC-LIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDK 184

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           I  +DVV +  MI  + ++  L ++L +  DM    V  +   +       AELA ++  
Sbjct: 185 IENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLG 244

Query: 221 RVIHGHAVVSGL--DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           + +H + + +G      V + T LID Y K   ++ ARRVFD  LS  + I+W AM+A Y
Sbjct: 245 KAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFD-GLSKASIISWTAMIAAY 303

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
               + +  + LF  +   G  P+E + L+++     AG A E  K +    +R      
Sbjct: 304 IHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAG-ALELGKLLHAFTLRNGFTLS 362

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           L   T  I   G+ G +  A  +  +     D  +W A++S  A +   D A
Sbjct: 363 LVLATAFIDMYGKCGDVRSARSVFDSFK-SKDLMMWSAMISSYAQNNCIDEA 413



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 5/144 (3%)

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           +I  + +N+   D+  ++A MR +D     + +   L+A   + +    + +HG  V +G
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
              +V V   LI  Y + G ++ AR +FD  EN  V   ++W+ M+  Y + G     L+
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDV---VSWSTMIRSYDRSGLLDEALD 211

Query: 290 LFHLLEMRGFAPDEYSFLAVLTAL 313
           L   + +    P E   +++   L
Sbjct: 212 LLRDMHVMRVKPSEIGMISITHVL 235


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/594 (32%), Positives = 322/594 (54%), Gaps = 48/594 (8%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           ARA+     +RS+  +N +++  +    +  +L LF ++P   IVSW A+I+ ++ + L 
Sbjct: 216 ARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLN 275

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L  F  ML + T++  P++ T+ S+   CA+L    + G  +H+  L+  +   P+ 
Sbjct: 276 AKALWFFSRMLSYSTMA--PDEFTITSVLSACANLGMVSI-GKQVHAYILRSRM---PYI 329

Query: 138 G---SALVHFYSRFRSPDNAKKV---------------------------------FDEI 161
           G   +AL+  Y++  S +NA+ V                                 FD +
Sbjct: 330 GQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVM 389

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
             RDVV + AMIVG+ QN    +++ +F  M  S      Y V+  L   A LA +E  +
Sbjct: 390 SNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGK 449

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
            IH  A+ S  +++  V   ++  Y ++G +  ARRVFD       ++ W +M+   AQ 
Sbjct: 450 QIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQH 509

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
           G     + LF  +   G  PD  +F+ VL+A  + G   E +++ ++++ ++ + P + H
Sbjct: 510 GLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSH 569

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
           Y C++  + RAG   +A+     MP EPDA  W +LLS   +H  AD+A    ++L+ I+
Sbjct: 570 YACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSID 629

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMH 461
           P +  AY  ++NV S  GRW++ A++ K  KD+ V+KE G SW  +  +VHVF A D +H
Sbjct: 630 PGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLH 689

Query: 462 ERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAP 521
            + + +Y   A++ ++ ++ G+VP    +LH+V D  K E L  HSEKLA+AFGLVS  P
Sbjct: 690 PQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVS-TP 748

Query: 522 RGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
              TLRI+KNLR+C DCH + K+IS+V +REI++RD  R+H F +G C+C D W
Sbjct: 749 EKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 204/478 (42%), Gaps = 75/478 (15%)

Query: 26  LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLN 82
           + ++Q +   +N+L++ Y+KS  L+ +  +F  +P  + VSWT ++   +       ++ 
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 83  IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142
           +FL M+   T    P Q TL ++  +CA+ + A   G  +HS  +KL L       ++++
Sbjct: 149 MFLDMV---TDGLSPTQFTLTNVLSSCAA-TEARGVGRKVHSFVVKLGLSSCVPVANSVL 204

Query: 143 HFYSRFRSPDNAKKVFDEIRERDV-------------------------------VCYGA 171
           + Y +    + A+ VF+ + ER V                               V + A
Sbjct: 205 NMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNA 264

Query: 172 MIVGFAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           +I G+ QN     +L  F+ M S S +    + ++  L A A L  +   + +H + + S
Sbjct: 265 VIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRS 324

Query: 231 GL---------------------------------DRNVIVGTGLIDGYGKAGIVSDARR 257
            +                                 D NVI  T L++GY K G +  AR 
Sbjct: 325 RMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHARE 384

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD  +S  + +AW AM+ GY Q G     +ELF L+   G  P+ Y+  AVL+ +C + 
Sbjct: 385 MFDV-MSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLS-VCASL 442

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              E  K I    +R   E        +++   R+G L  A R+   + +  +   W ++
Sbjct: 443 ACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSM 502

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           +   A HG  + A  + + ++ +    D   +V V +  + VG  DE     + ++D+
Sbjct: 503 IVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDK 560


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 199/590 (33%), Positives = 307/590 (52%), Gaps = 40/590 (6%)

Query: 23  ARALKSSQADRS--IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           AR L      R+  I+  LIT Y ++  L+ +  + + +     ++W A+IS + +  L 
Sbjct: 211 ARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLF 270

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKPF--- 136
            +      +   L    ++ T  S+   CA     FL G  +H+  LK  L+ D+ F   
Sbjct: 271 EDALTLFRKMRLLGVQVDESTYTSVISACAD-GGFFLLGKQVHAYILKNELNPDRDFLLS 329

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA------------------------- 171
            G+ L+  Y ++   D A+K+F E+  +D++ +                           
Sbjct: 330 VGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKN 389

Query: 172 ------MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
                 MI G AQN     +L +F  M+        Y  +GA+ A + L A+E  R +H 
Sbjct: 390 LLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHA 449

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
             V  G D  + VG  +I  Y + GIV  AR +F   +  ++ ++WN+M+A   Q G   
Sbjct: 450 QIVHLGHDSTLSVGNAMITMYARCGIVEAARTMF-LTMPFVDPVSWNSMIAALGQHGHGV 508

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             +EL+  +   G  PD  +FL VL+A  +AGL  E  ++   M   Y + PG +HY  +
Sbjct: 509 KAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARM 568

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           I    RAG+  DA+ +  +MPFE  A +W ALL+    HG  D+  +  ++L  + P  D
Sbjct: 569 IDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHD 628

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             YV+++N+ + +GRW++VA  RK+M+DR V+KE   SW EV+ KVHVFL  D +H    
Sbjct: 629 GTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVL 688

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT 525
            IY  L +L  E +++GY+P    +LH++    K  AL  HSEKLA+AFGL+   P+G T
Sbjct: 689 SIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMK-LPQGAT 747

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +R+ KNLRIC DCH + K++S+VV REIVVRD  R+H F NG C+C + W
Sbjct: 748 VRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 121/526 (23%), Positives = 212/526 (40%), Gaps = 117/526 (22%)

Query: 11  PQNTSTD--PRIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSW 67
           PQN S+    R VH   + S    R  I N LI  Y KS+   Y+ +LF+ IP P++++ 
Sbjct: 23  PQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIAR 82

Query: 68  TALISAHS-------------NSPLSL------NIFLSMLRHPT--------------LS 94
           T LI+A+S              +PL +      N  ++   H                 +
Sbjct: 83  TTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWAN 142

Query: 95  FLPNQRTLASLF----------KTCASLSHAFL-FGLSLHSLSLK--LSLHDK------- 134
           F P+  T AS+           + C  +    + FG+ +    L   LS++ K       
Sbjct: 143 FQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLV 202

Query: 135 --------------------PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
                                F  + L+  Y R      A+++ D + E+  + + AMI 
Sbjct: 203 SSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMIS 262

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL-- 232
           G+  +    D+L++F  MR   V       +  + A A+       + +H + + + L  
Sbjct: 263 GYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNP 322

Query: 233 DRNVI--VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY------------ 278
           DR+ +  VG  LI  Y K G V  AR++F E + V + I WN +++GY            
Sbjct: 323 DRDFLLSVGNTLITLYWKYGKVDGARKIFYE-MPVKDIITWNTLLSGYVNAGRMEEAKSF 381

Query: 279 -------------------AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
                              AQ G     L+LF+ +++ G+ P++Y+F   +TA C+   A
Sbjct: 382 FAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITA-CSVLGA 440

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E+ + +    V    +  L     +I+   R G +E A  + + MPF  D   W ++++
Sbjct: 441 LENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSWNSMIA 499

Query: 380 FSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDE 423
               HG    A ++ ++++   I P D   ++ V +  S  G  +E
Sbjct: 500 ALGQHGHGVKAIELYEQMLKEGILP-DRRTFLTVLSACSHAGLVEE 544


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/558 (34%), Positives = 305/558 (54%), Gaps = 23/558 (4%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA----HSNSPLSLNIFLSMLR 89
           SI N+L   Y+KS  L  ++R F  +P  N+++WT +ISA     + + L L +FL ML 
Sbjct: 215 SIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLM 274

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                 LPN+ TL S+   C +     L G  + +   K+         ++ ++ Y R  
Sbjct: 275 D---GVLPNEFTLTSVMSLCGTRLDLNL-GKQVQAFCFKIGCQTNIPVKNSTMYLYLRKG 330

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQ-----------NSRLVDSLSVFADMRSSDVG 198
             D A + F+E+ +  ++ + AMI G+AQ            SR   +L VF +++ S + 
Sbjct: 331 ETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMK 390

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
             ++  S  L   + + A+EQ   IH   + +G   +V+V + L++ Y K G + DA + 
Sbjct: 391 PDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKA 450

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E +S+   + W +M++GY+Q G     ++LF  +   G  P+E +F+ VL+A   AGL
Sbjct: 451 FVE-MSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGL 509

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           A ++E + + MK  YK+EP ++HY C++    R GRL+DA        FEP+ A+W +L+
Sbjct: 510 AEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLV 569

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
           +    HG  ++A     RLI++ P     YV++ N+     RW +VA VRK+MK   +  
Sbjct: 570 AGCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISNERWHDVARVRKLMKQEGLGV 629

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
              RSWI +K KV+ F A D+ HE ++++Y  L  L+E+ + +GY P     L +  D +
Sbjct: 630 LMDRSWITIKDKVYFFKANDKTHELSDELYQLLENLLEKAKTIGYEPYQSAELSDSEDDK 689

Query: 499 KREA--LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
           K  A  + +HSE+LA+A GL+   P G T+R+ KN+ +CRDCH S K+ S +  REIVVR
Sbjct: 690 KPPAGSVRHHSERLAVALGLLQ-TPPGATVRVTKNITMCRDCHSSIKFFSLLANREIVVR 748

Query: 557 DVNRYHRFLNGSCTCGDL 574
           D  R H+F +G C+CGD 
Sbjct: 749 DSKRLHKFKDGRCSCGDF 766



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/433 (22%), Positives = 202/433 (46%), Gaps = 26/433 (6%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-N 76
           R +H   +K+ + AD  +  +L+  Y +      +  LF+ +P  N+V+WTALI+ ++ N
Sbjct: 98  RALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVN 157

Query: 77  SPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           S L  +L +F+ ML        P+  TL ++   C++ ++A L G  +H  ++K      
Sbjct: 158 SQLLEALEVFVEMLEA---GRYPSHYTLGAMLNACSASNNADL-GSQVHGYTIKYRALSI 213

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMR 193
              G++L   Y++  S ++A + F  + +++V+ +  MI   A++    +  L++F DM 
Sbjct: 214 TSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDML 273

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              V    + ++  +        +   + +       G   N+ V    +  Y + G   
Sbjct: 274 MDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETD 333

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQS-----------TVLELFHLLEMRGFAPD 302
           +A R F+E +  ++ I WNAM++GYAQ  + +             L++F  L+     PD
Sbjct: 334 EAMRFFEE-MDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPD 392

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
            ++F ++L+ +C++ +A E  + I    ++      +   + L++   + G +EDA +  
Sbjct: 393 LFTFSSILS-VCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAF 451

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYVIVANVLSGVGR 420
           + M        W +++S  + HG+   A ++ +  R   + P ++  +V V +  S  G 
Sbjct: 452 VEMSIRT-LVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRP-NEITFVCVLSACSYAGL 509

Query: 421 WDEVAEVRKVMKD 433
            ++      +MK+
Sbjct: 510 AEKAEHYFDMMKE 522



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 5/186 (2%)

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V S MY     L    E  ++   R +HGH V +G   ++ V T L++ Y + G   DAR
Sbjct: 76  VQSAMYV--PLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDAR 133

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +FD+ +   N + W A++ GY         LE+F  +   G  P  Y+  A+L A C+A
Sbjct: 134 SLFDQ-MPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNA-CSA 191

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               +    +    ++Y+          L     ++G LE A R    +P + +   W  
Sbjct: 192 SNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVP-DKNVITWTT 250

Query: 377 LLSFSA 382
           ++S  A
Sbjct: 251 MISACA 256


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 198/562 (35%), Positives = 324/562 (57%), Gaps = 12/562 (2%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           R VHA AL++   +  ++   ++  Y K   +  +  +F+ +P  N VSW A+I  ++  
Sbjct: 139 REVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADN 198

Query: 76  -NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            N+  ++ +F  M++      + +   LA+L + C  L +       +H L +++ L   
Sbjct: 199 GNATEAMALFWRMVQEGV--DVTDASVLAAL-QACGELGYLDEV-RRVHELLVRVGLSSN 254

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDV-VCYGAMIVGFAQNSRLVDSLSVFADMR 193
               +AL+  Y++ +  D A +VF+E+  +   + + AMI+GF QN    D+  +FA M+
Sbjct: 255 VSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQ 314

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             +V    + +   + A A+++   Q R IHG+++   LD++V V T LID Y K G VS
Sbjct: 315 LENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVS 374

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            ARR+FD      + I WNAM+ GY   G     +ELF  ++  G  P+E +FL+VL A 
Sbjct: 375 IARRLFDSARD-RHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAAC 433

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            +AGL  E +K+   MK  Y LEPG+EHY  ++  +GRAG+L++A      MP EP  +V
Sbjct: 434 SHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISV 493

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           + A+L    +H   ++A +  + + ++ P +   +V++AN+ +    W +VA VR  M+ 
Sbjct: 494 YGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEK 553

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           + ++K  G S I++K +VH F +G   H+  +DIY +LA+L+EE + +GYVP  D  +H+
Sbjct: 554 KGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDS-IHD 612

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V D  K + L  HSEKLA+A+GL+  AP G T++I KNLR+C DCH + K IS +  REI
Sbjct: 613 VEDDVKAQLLNTHSEKLAIAYGLIRTAP-GTTIQIKKNLRVCNDCHNATKLISLLTGREI 671

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD+ R+H F +G C+CGD W
Sbjct: 672 IMRDIQRFHHFKDGKCSCGDYW 693



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 182/371 (49%), Gaps = 13/371 (3%)

Query: 19  RIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA+      A  SI +  + N Y K    + + R+F+ +PS + V+W A+++ ++ +
Sbjct: 36  RAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARN 95

Query: 78  PLSLNIFLSMLRHPTLSF--LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            L  +   +++R         P+  TL S+   CA  + A      +H+ +L+  L +  
Sbjct: 96  GLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACAD-ARALHACREVHAFALRAGLDELV 154

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +A++  Y +  + + A+ VFD +  R+ V + AMI G+A N    +++++F  M   
Sbjct: 155 NVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQE 214

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V  T   V  AL+A  EL  +++ R +H   V  GL  NV V   LI  Y K      A
Sbjct: 215 GVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLA 274

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VF+E  +    I+WNAM+ G+ Q         LF  +++    PD ++ ++V+ A+ +
Sbjct: 275 AQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVAD 334

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
                ++ +WI    +R++L+  +   T LI    + GR+  A R+        D+A  R
Sbjct: 335 ISDPLQA-RWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLF-------DSARDR 386

Query: 376 ALLSFSA-IHG 385
            +++++A IHG
Sbjct: 387 HVITWNAMIHG 397



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 185/402 (46%), Gaps = 19/402 (4%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P  RT  +L K CA+ +     G ++H+      L  +    +AL + Y + R P +A++
Sbjct: 14  PVLRTFTALLKLCAARAD-LATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARR 72

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS--GALRAAAEL 214
           VFD +  RD V + A++ G+A+N     ++     M+  + G     V+    L A A+ 
Sbjct: 73  VFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            A+  CR +H  A+ +GLD  V V T ++D Y K G V  AR VFD  + V NS++WNAM
Sbjct: 133 RALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFD-CMPVRNSVSWNAM 191

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + GYA  G+ +  + LF  +   G    + S LA L A    G   E  + +  + VR  
Sbjct: 192 IDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRR-VHELLVRVG 250

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL-LSFSAIHGKADMASKM 393
           L   +     LI+   +  R + A ++   +  +     W A+ L F+      D A ++
Sbjct: 251 LSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPED-AERL 309

Query: 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHV 453
             R+   N   DS + +V+ + +       VA++   ++ R +     R   ++   V+V
Sbjct: 310 FARMQLENVRPDS-FTLVSVIPA-------VADISDPLQARWIHGYSIRH--QLDQDVYV 359

Query: 454 FLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
             A   M+ +   +   +A  + +  R  +V  W+ M+H  G
Sbjct: 360 LTALIDMYSKCGRV--SIARRLFDSARDRHVITWNAMIHGYG 399



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 7/235 (2%)

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
           G  +   +  L+  A  A +   R +H      GL    I  T L + Y K    +DARR
Sbjct: 13  GPVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARR 72

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL--EMRGFAPDEYSFLAVLTALCN 315
           VFD  +   + +AWNA++AGYA+ G  S+ +E    +  E  G  PD  + ++VL A C 
Sbjct: 73  VFDR-MPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPA-CA 130

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
              A  + + +    +R  L+  +   T ++ A  + G +E A  +   MP   ++  W 
Sbjct: 131 DARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVR-NSVSWN 189

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A++   A +G A  A  +  R++        A V+ A  L   G    + EVR+V
Sbjct: 190 AMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAA--LQACGELGYLDEVRRV 242


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/540 (35%), Positives = 307/540 (56%), Gaps = 8/540 (1%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSF 95
           L+  Y+K   +  ++R+F+ +P  N+VSW ++I    ++ L   ++ +F  +LR  T+  
Sbjct: 286 LVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTV-- 343

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           +PN+ +++S+   CA++     FG  +H + +K  L    +  ++L+  Y + R  D   
Sbjct: 344 IPNEVSVSSVLSACANMG-GLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGV 402

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           K+F  + +RDVV +  +++GF QN +  ++ + F  MR   +       S  L ++A LA
Sbjct: 403 KLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLA 462

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+ Q   IH   +  G  +N+ +   LI  Y K G + DA +VF E +   N I+W AM+
Sbjct: 463 ALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVF-EGIEDHNVISWTAMI 521

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           + Y   G  + V+ELF  +   G  P   +F+ VL+A  + G   E       MK  + +
Sbjct: 522 SAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDM 581

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
            PG EHY C++  +GRAG L++A+R   +MP +P  +VW ALL     +G   M  +  +
Sbjct: 582 NPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAE 641

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
           RL ++ PY+   YV++AN+ +  GR +E  EVR++M    VRKE G SWI+VK    VF 
Sbjct: 642 RLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFT 701

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
           A DR H  +++IY  L +L +  ++ GYV   + + +++ + E+ + LWYHSEKLALAFG
Sbjct: 702 AHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFG 761

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           L++  P    +RI KNLR C  CH   K  S++ +REI+VRD+NR+HRF +G C+CGD W
Sbjct: 762 LLT-LPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 184/402 (45%), Gaps = 26/402 (6%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFN--HIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPT 92
           ++NNLI  Y+K   L+ +L LF+  H     IV+WT+LI+  S+  + L   LS+     
Sbjct: 179 LFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQA-LSLFNQMR 237

Query: 93  LSF-LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            S   PNQ T +S+    A+ +   L G  LHSL  K       F G+ALV  Y++    
Sbjct: 238 CSGPYPNQFTFSSILSASAA-TMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADM 296

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD-MRSSDVGSTMYCVSGALRA 210
            +A +VFD++ ER++V + +MIVGF  N+    ++ VF D +R   V      VS  L A
Sbjct: 297 HSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSA 356

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A +  +   R +HG  V  GL     V   L+D Y K        R FDE + +   + 
Sbjct: 357 CANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKC-------RFFDEGVKLFQCVG 409

Query: 271 ------WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE- 323
                 WN ++ G+ Q          F ++   G  PDE SF  VL +  +A LA   + 
Sbjct: 410 DRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHS--SASLAALHQG 467

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
             I    ++      +     LI+   + G L DA ++   +  + +   W A++S   +
Sbjct: 468 TAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISAYQL 526

Query: 384 HGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDE 423
           HG A+   ++ + ++   I P     +V V +  S  GR +E
Sbjct: 527 HGCANQVIELFEHMLSEGIEP-SHVTFVCVLSACSHTGRVEE 567


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 313/557 (56%), Gaps = 26/557 (4%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA---HSNSPLSLNIFLSMLR 89
           S+ N L+T Y K+  L  + R+F  +    + VSW ++I A   H     +L +F  M+R
Sbjct: 174 SVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVR 233

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                   +  TLAS+      L      GL  H   +K   H     GS L+  YS+  
Sbjct: 234 R---GLNVDMFTLASVLTAFTCLED-LSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG 289

Query: 150 SP-DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV-DSLSVFADM-----RSSDVGSTMY 202
               + +KVF+EI E D+V +  M+ G++QN   + D+L  F  M     R +D   +  
Sbjct: 290 GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDC--SFV 347

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIVSDARRVFDE 261
           CV   + A + L++  Q + IH  A+ S +  N I V   LI  Y K G + DARR+FD 
Sbjct: 348 CV---ISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDR 404

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            ++  N+++ N+M+AGYAQ G +   L LF  +  R  AP   +F++VL+A  + G   E
Sbjct: 405 -MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEE 463

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
              +   MK ++ +EP  EHY+C+I  +GRAG+L +AE +   MPF P +  W +LL   
Sbjct: 464 GWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGAC 523

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
             HG  ++A K   +++ + P + + YV+++N+ +  GRW+EVA VRK M+DR V+K+ G
Sbjct: 524 RTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPG 583

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP-VWDEMLHNVGDR--E 498
            SWIEVK ++HVF+A D  H   ++IY  L E+  + +R GYVP V   ++ + G R  E
Sbjct: 584 CSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGE 643

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K   L +HSEKLA+AFGL+S    G+ + +VKNLRIC DCH + K+IS +  REI VRD 
Sbjct: 644 KEIRLGHHSEKLAVAFGLIS-TKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDA 702

Query: 559 NRYHRFLNGSCTCGDLW 575
           +R+H F  G C+CGD W
Sbjct: 703 HRFHCFKEGQCSCGDYW 719



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 191/377 (50%), Gaps = 20/377 (5%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR      +D +++  N +I  Y+K +    + +LF+ IP P++VS+  LISA+++
Sbjct: 58  RLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYAD 117

Query: 77  ---SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
              +  +L +F S +R   L    +  TL+++   C       L G  LHS+++      
Sbjct: 118 CGETAPALGLF-SGMREMGLDM--DGFTLSAVITACC--DDVGLIG-QLHSVAVSSGFDS 171

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                +AL+ +Y +    D+AK+VF  +   RD V + +MIV + Q+     +L +F +M
Sbjct: 172 YVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEM 231

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-AGI 251
               +   M+ ++  L A   L  +      HG  + +G  +N  VG+GLID Y K  G 
Sbjct: 232 VRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGG 291

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVL 310
           +SD R+VF+E ++  + + WN M++GY+Q  +     LE F  ++  G+ P++ SF+ V+
Sbjct: 292 MSDCRKVFEE-ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVI 350

Query: 311 TALCNAGLAGESE-KWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           +A  N  L+  S+ K I  + ++  +    +     LI+   + G L+DA R+   M  E
Sbjct: 351 SACSN--LSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-E 407

Query: 369 PDAAVWRALLSFSAIHG 385
            +     ++++  A HG
Sbjct: 408 HNTVSLNSMIAGYAQHG 424



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 133/308 (43%), Gaps = 39/308 (12%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF-----------CG--------------- 138
           L KTC +       G SLHSL +K  +    +           CG               
Sbjct: 14  LLKTCIA-ERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 139 -----SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                +A++  Y++   P  A ++FD+I E D+V Y  +I  +A       +L +F+ MR
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              +    + +S  + A  +   +     +H  AV SG D  V V   L+  YGK G + 
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGL--IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA+RVF     + + ++WN+M+  Y Q  + S  L LF  +  RG   D ++  +VLTA 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 314 -CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR-AGRLEDAERIAMAMPFEPDA 371
            C   L+G  +   + +K  +     +   + LI    +  G + D  ++   +  EPD 
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVG--SGLIDLYSKCGGGMSDCRKVFEEIT-EPDL 307

Query: 372 AVWRALLS 379
            +W  ++S
Sbjct: 308 VLWNTMVS 315


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 200/564 (35%), Positives = 303/564 (53%), Gaps = 13/564 (2%)

Query: 22  HARALKSSQA---------DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           H R L+ + A          R++   L+T    +  ++Y+ RLF  +  P+   + +LI 
Sbjct: 22  HLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIK 81

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           A S    SL+  L   R      +P+  T  S+ K CA LS     G  +HS        
Sbjct: 82  ASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLS-LLCIGTLVHSHVFVSGYA 140

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F  +AL+ FY++  +P  A+KVFDE+ +R +V + +MI G+ QN    +++ VF  M
Sbjct: 141 SDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKM 200

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R S V          L A ++L +++    +H   V SG+  NV++ T L++ + + G V
Sbjct: 201 RESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDV 260

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VF   +   N + W AM++GY   G     +E+FH ++ RG  P+  +F+AVL+A
Sbjct: 261 GRARAVFYSMIEG-NVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSA 319

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDA 371
             +AGL  E       MK  Y + PG+EH+ C++   GR G L +A +    +   E   
Sbjct: 320 CAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVP 379

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           AVW A+L    +H   D+  ++ + LI+  P +   YV+++N+ +  GR D V  VR VM
Sbjct: 380 AVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVM 439

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
             R ++K+ G S I+V  + ++F  GD+ H  T +IY  L EL+  C+  GY PV +  +
Sbjct: 440 IQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAM 499

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H +   E+  AL YHSEKLA+AFGL+     G TLRIVKNLRIC DCH + K+IS V+ R
Sbjct: 500 HELEGEEREYALRYHSEKLAVAFGLMKTGD-GVTLRIVKNLRICEDCHSAIKFISAVMNR 558

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD  R+H F  GSC+C D W
Sbjct: 559 EIIVRDKLRFHHFREGSCSCSDYW 582


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 203/624 (32%), Positives = 321/624 (51%), Gaps = 62/624 (9%)

Query: 9   PQPQNTST--DPRIVHARALKSSQADRSIYNNLITNY-SKSNL----LSYSLRLFNHIPS 61
           PQ  N  T  D   +HA  +KS Q   ++    I  + + S+L    L Y+ ++FN +P 
Sbjct: 28  PQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQ 87

Query: 62  PNIVSWTALISAHSNSP-----LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
            N  SW  +I   S S      +++ +F  M+    +   PN+ T  S+ K CA  +   
Sbjct: 88  RNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVE--PNRFTFPSVLKACAK-TGKI 144

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFY------------------------------- 145
             G  +H L+LK       F  S LV  Y                               
Sbjct: 145 QEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204

Query: 146 --------------SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                          R      A+ +FD++R+R VV +  MI G++ N    D++ VF +
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+  D+      +   L A + L ++E    +H +A  SG+  + ++G+ LID Y K GI
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 324

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  A  VF E L   N I W+AM+ G+A  G     ++ F  +   G  P + +++ +LT
Sbjct: 325 IEKAIHVF-ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  E  ++  +M     LEP +EHY C++  +GR+G L++AE   + MP +PD 
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            +W+ALL    + G  +M  ++   L+D+ P+D  AYV ++N+ +  G W EV+E+R  M
Sbjct: 444 VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRM 503

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           K++ +RK+ G S I++ G +H F+  D  H + ++I + L E+ ++    GY P+  ++L
Sbjct: 504 KEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVL 563

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            N+ + +K   L YHSEK+A AFGL+S +P GK +RIVKNLRIC DCH S K IS+V +R
Sbjct: 564 LNLEEEDKENVLHYHSEKIATAFGLISTSP-GKPIRIVKNLRICEDCHSSIKLISKVYKR 622

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           +I VRD  R+H F +GSC+C D W
Sbjct: 623 KITVRDRKRFHHFQDGSCSCMDYW 646


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 309/580 (53%), Gaps = 40/580 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D   +  ++  Y +   +  +  +F  +     V W A+IS + +S +++  F  + R  
Sbjct: 227 DDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAF-ELFRRM 285

Query: 92  TLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG----SALVHFYS 146
            L  +P ++ T  S+   CA++   F  G S+H   ++L  +  P       +ALV FYS
Sbjct: 286 VLERVPLDEFTFTSVLSACANVG-LFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYS 344

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL------------------------ 182
           +  +   A+++FD +  +DVV +  ++ G+ ++S L                        
Sbjct: 345 KCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSG 404

Query: 183 -------VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
                   D+L +F  MRS +V    Y  +GA+ A  EL A++  + +HGH V  G + +
Sbjct: 405 YVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGS 464

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
              G  LI  Y + G V +A  +F   +  ++S++WNAM++   Q G     LELF  + 
Sbjct: 465 NSAGNALITMYARCGAVKEAHLMF-LVMPNIDSVSWNAMISALGQHGHGREALELFDRMV 523

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G  PD  SFL VLTA  ++GL  E  ++ E MK  + + PG +HYT LI  +GRAGR+
Sbjct: 524 AEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRI 583

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
            +A  +   MPFEP  ++W A+LS     G  ++ +    +L  + P  D  Y++++N  
Sbjct: 584 GEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTY 643

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           S  G W + A VRK+M+DR V+KE G SWIE   KVHVFL GD  H    ++Y  L  + 
Sbjct: 644 SAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVG 703

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
            +  +LGYVP    +LH++   +K   L+ HSE+LA+ FGL++  P G T+ ++KNLRIC
Sbjct: 704 AKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLN-LPPGATVTVLKNLRIC 762

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            DCH +  ++S+ V REIVVRDV R+H F +G C+CG+ W
Sbjct: 763 DDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 106/509 (20%), Positives = 208/509 (40%), Gaps = 88/509 (17%)

Query: 25  ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-----PNIVSWTALISAHSNSP- 78
           A+  ++ D  ++N +I+ Y++++  + ++ +F  + +     P+  S+TAL+SA  + P 
Sbjct: 113 AVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPN 172

Query: 79  LSL----NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           +S+     +  S+L+      L     L +L+  C S          L  +  K  L   
Sbjct: 173 ISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDL--- 229

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + +V  Y R      A+ VF+E+  +  V + AMI G+  +   V++  +F  M  
Sbjct: 230 --TWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVL 287

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI------VGTGLIDGYGK 248
             V    +  +  L A A +      + +HG  +   L  N +      V   L+  Y K
Sbjct: 288 ERVPLDEFTFTSVLSACANVGLFAHGKSVHGQII--RLQPNFVPEAALPVNNALVTFYSK 345

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G ++ ARR+FD N+++ + ++WN +++GY +       +E+F  +  +    +E S++ 
Sbjct: 346 CGNIAVARRIFD-NMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK----NELSWMV 400

Query: 309 VLTALCNAGLAGESEKWIERMK----------------------------------VRYK 334
           +++   + G A ++ K   +M+                                  V+  
Sbjct: 401 MVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLG 460

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
            E        LI+   R G +++A  + + MP   D+  W A++S    HG    A ++ 
Sbjct: 461 FEGSNSAGNALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAMISALGQHGHGREALELF 519

Query: 395 KRLIDINPYDDS-AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHV 453
            R++    Y D  +++ V    +  G  DE     + MK         R +  + G    
Sbjct: 520 DRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMK---------RDFGIIPG---- 566

Query: 454 FLAGDRMHERTEDIYTKLAELMEECERLG 482
                      ED YT+L +L+    R+G
Sbjct: 567 -----------EDHYTRLIDLLGRAGRIG 584


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 197/593 (33%), Positives = 321/593 (54%), Gaps = 43/593 (7%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           RI  AR L     D  +  +N +IT Y ++ ++  +  LF+ +P  N +SW  +I+ ++ 
Sbjct: 336 RITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQ 395

Query: 77  ---SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
              S  +L++  ++ R+     LP+  +L S F  C+ +  A   G  +HSL++K     
Sbjct: 396 NGRSEEALDLLQALHRN---GMLPSLSSLTSSFLACSHIG-ALETGRQVHSLAVKAGCQF 451

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             +  +AL+  Y + R+ +  ++VF+ +R +D V + + I    QN+ L D+  +F +M 
Sbjct: 452 NSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNML 511

Query: 194 SSDVGSTMYCVSGALRA-------------------------------AAELAAMEQCRV 222
           S DV S    +S   +A                                  L + +  + 
Sbjct: 512 SRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQ 571

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH  A+  G+D  +IV   L+  Y K G  +D+ +VFD ++   +   WN  + G AQ G
Sbjct: 572 IHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFD-SMEERDIFTWNTFITGCAQHG 629

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                ++++  +E  G  P+E +F+ +L A  +AGL  E  ++ + M   Y L P LEHY
Sbjct: 630 LGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHY 689

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
            C++  +GR G ++ AE+    MP EPD  +W ALL    IH  A++  +  ++L    P
Sbjct: 690 ACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEP 749

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
            +   YV+++N+ S +G W EVAE+RK+MK R V KE G SW++++ KVH F+ GD+ HE
Sbjct: 750 SNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHE 809

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
           + E+I   L +L       GYVP  + +LH++ + +K  +L YHSEKLA+A+GL+   P+
Sbjct: 810 KIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLV-TPK 868

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           G  ++I+KNLRIC DCH   K++S V +R+I +RD NR+H F NGSC+CGD W
Sbjct: 869 GMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/438 (21%), Positives = 186/438 (42%), Gaps = 52/438 (11%)

Query: 30  QADRSIYNNLITNYSK-SNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSML 88
           ++D  I  +++  Y++ ++ L  +++ F+ +   N  +W+ +I+A S+            
Sbjct: 255 ESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYG 314

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS--ALVHFYS 146
           R P  S +P+Q  L +    C  ++ A +    +            P   S  A++  Y 
Sbjct: 315 RDPVKS-IPSQTALLTGLARCGRITEARILFEQI----------PDPIVVSWNAMITGYM 363

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +    D AK++FD +  R+ + +  MI G+AQN R  ++L +   +  + +  ++  ++ 
Sbjct: 364 QNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTS 423

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA----------------- 249
           +  A + + A+E  R +H  AV +G   N  V   LI  YGK                  
Sbjct: 424 SFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKD 483

Query: 250 --------------GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
                          ++ DAR +FD  LS  + ++W  +++ YAQ       +E F  + 
Sbjct: 484 TVSWNSFIAALVQNNMLEDARHIFDNMLS-RDVVSWTTIISAYAQAERGDEAVEFFKTML 542

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
                P+    L +L ++C    + +  + I  + +++ ++  L     L+S   + G  
Sbjct: 543 HEHEKPNS-PILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-C 600

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVAN 413
            D+ ++  +M  E D   W   ++  A HG    A KM + +  + + P ++  +V + N
Sbjct: 601 ADSHKVFDSME-ERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLP-NEVTFVGLLN 658

Query: 414 VLSGVGRWDEVAEVRKVM 431
             S  G  DE  +  K M
Sbjct: 659 ACSHAGLVDEGWQFFKSM 676



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/395 (18%), Positives = 164/395 (41%), Gaps = 60/395 (15%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D+S ++  I   ++   L  +  +F+ +P  +I++W ++ISA+ NS         ML   
Sbjct: 32  DKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNS--------GMLEDA 83

Query: 92  TLSFLP----NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK-PFCGSALVHFYS 146
            + F      N RT   L    A L      G  L +  +   + ++     +A+V  Y 
Sbjct: 84  RILFDAISGGNVRTATILLSGYARL------GRVLDARRVFDGMPERNTVAWNAMVSCYV 137

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +      A+++FD +  RDV  + +M+ G+  + ++VD+ ++F  M   ++ +    +SG
Sbjct: 138 QNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISG 197

Query: 207 ALRAAAELAAMEQCRVIHGHA-------------------------------VVSGLDRN 235
            +R        +  R++H                                  + +G + +
Sbjct: 198 YVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESD 257

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           V++GT +++ Y +     D    F + +   N   W+ M+A  +  G     + ++    
Sbjct: 258 VVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDP 317

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
           ++       S  A+LT L   G   E+    E++      +P +  +  +I+   + G +
Sbjct: 318 VKSIP----SQTALLTGLARCGRITEARILFEQIP-----DPIVVSWNAMITGYMQNGMV 368

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           ++A+ +   MPF  +   W  +++  A +G+++ A
Sbjct: 369 DEAKELFDRMPFR-NTISWAGMIAGYAQNGRSEEA 402


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 313/557 (56%), Gaps = 26/557 (4%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA---HSNSPLSLNIFLSMLR 89
           S+ N L+T Y K+  L  + R+F  +    + VSW ++I A   H     +L +F  M+R
Sbjct: 174 SVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVR 233

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                   +  TLAS+      L      GL  H   +K   H     GS L+  YS+  
Sbjct: 234 R---GLNVDMFTLASVLTAFTCLED-LSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG 289

Query: 150 SP-DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV-DSLSVFADM-----RSSDVGSTMY 202
               + +KVF+EI E D+V +  M+ G++QN   + D+L  F  M     R +D   +  
Sbjct: 290 GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDC--SFV 347

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIVSDARRVFDE 261
           CV   + A + L++  Q + IH  A+ S +  N I V   LI  Y K G + DARR+FD 
Sbjct: 348 CV---ISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDR 404

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            ++  N+++ N+M+AGYAQ G +   L LF  +  R  AP   +F++VL+A  + G   E
Sbjct: 405 -MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEE 463

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
              +   MK ++ +EP  EHY+C+I  +GRAG+L +AE +   MPF P +  W +LL   
Sbjct: 464 GWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGAC 523

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
             HG  ++A K   +++ + P + + YV+++N+ +  GRW+EVA VRK M+DR V+K+ G
Sbjct: 524 RTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPG 583

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP-VWDEMLHNVGDR--E 498
            SWIEVK ++HVF+A D  H   ++IY  L E+  + +R GYVP V   ++ + G R  E
Sbjct: 584 CSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGE 643

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K   L +HSEKLA+AFGL+S    G+ + +VKNLRIC DCH + K+IS +  REI VRD 
Sbjct: 644 KEIRLGHHSEKLAVAFGLIS-TKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDA 702

Query: 559 NRYHRFLNGSCTCGDLW 575
           +R+H F  G C+CGD W
Sbjct: 703 HRFHCFKEGQCSCGDYW 719



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 191/377 (50%), Gaps = 20/377 (5%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR      +D +++  N +I  Y+K +    + +LF+ IP P++VS+  LISA+++
Sbjct: 58  RLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYAD 117

Query: 77  ---SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
              +  +L +F S +R   L    +  TL+++   C       L G  LHS+++      
Sbjct: 118 CGETAPALGLF-SGMREMGLDM--DXFTLSAVITACC--DDVGLIG-QLHSVAVSSGFDS 171

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                +AL+ +Y +    D+AK+VF  +   RD V + +MIV + Q+     +L +F +M
Sbjct: 172 YVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEM 231

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-AGI 251
               +   M+ ++  L A   L  +      HG  + +G  +N  VG+GLID Y K  G 
Sbjct: 232 VRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGG 291

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVL 310
           +SD R+VF+E ++  + + WN M++GY+Q  +     LE F  ++  G+ P++ SF+ V+
Sbjct: 292 MSDCRKVFEE-ITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVI 350

Query: 311 TALCNAGLAGESE-KWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           +A  N  L+  S+ K I  + ++  +    +     LI+   + G L+DA R+   M  E
Sbjct: 351 SACSN--LSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-E 407

Query: 369 PDAAVWRALLSFSAIHG 385
            +     ++++  A HG
Sbjct: 408 HNTVSLNSMIAGYAQHG 424



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 133/308 (43%), Gaps = 39/308 (12%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF-----------CG--------------- 138
           L KTC +       G SLHSL +K  +    +           CG               
Sbjct: 14  LLKTCIA-ERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 139 -----SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                +A++  Y++   P  A ++FD+I E D+V Y  +I  +A       +L +F+ MR
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              +    + +S  + A  +   +     +H  AV SG D  V V   L+  YGK G + 
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGL--IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA+RVF     + + ++WN+M+  Y Q  + S  L LF  +  RG   D ++  +VLTA 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 314 -CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR-AGRLEDAERIAMAMPFEPDA 371
            C   L+G  +   + +K  +     +   + LI    +  G + D  ++   +  EPD 
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVG--SGLIDLYSKCGGGMSDCRKVFEEIT-EPDL 307

Query: 372 AVWRALLS 379
            +W  ++S
Sbjct: 308 VLWNTMVS 315


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/582 (33%), Positives = 305/582 (52%), Gaps = 30/582 (5%)

Query: 2   ALDLNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60
           ALDL +Q            +H + +KS  Q +  + + LI  Y+K   L  +  +   + 
Sbjct: 430 ALDLGEQ------------IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR 477

Query: 61  SPNIVSWTALISAHSNSPL---SLNIFLSM----LRHPTLSFLPNQRTLASLFKTCASLS 113
             ++VSWTA+I+ ++   L   +L +F  M    +R   + F       +S    CA + 
Sbjct: 478 EEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGF-------SSAISACAGI- 529

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
            A   G  +H+ S      +    G+ALV  Y+R     +A   F++I  +D + + A+I
Sbjct: 530 QALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALI 589

Query: 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
            GFAQ+    ++L VF+ M  + V + ++    A+ A A  A ++Q + IH   + +G D
Sbjct: 590 SGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYD 649

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
                   LI  Y K G + DA+R F E +   N ++WNAM+ GY+Q G  S  + LF  
Sbjct: 650 SETEASNVLITLYSKCGSIEDAKREFFE-MPEKNVVSWNAMITGYSQHGYGSEAVSLFEE 708

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           ++  G  P+  +F+ VL+A  + GL  E   +   M   + L P  EHY C++  +GRA 
Sbjct: 709 MKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAA 768

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
            L  A      MP EPDA +WR LLS   +H   ++     + L+++ P D + YV+++N
Sbjct: 769 LLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSN 828

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + +  G+WD     R++MKDR V+KE GRSWIEVK  +H F  GDR+H   E IY  + +
Sbjct: 829 MYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDD 888

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L E    +GYV     +L++V   +K    + HSEKLA+AFGL+S       +R++KNLR
Sbjct: 889 LNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLS-LTNTMPIRVIKNLR 947

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +C DCH   K++S++  R IVVRD  R+H F  G C+C D W
Sbjct: 948 VCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 116/504 (23%), Positives = 221/504 (43%), Gaps = 58/504 (11%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D + +HAR  KS    +  + + LI  Y     +  +++LF+ IPS N+  W  +IS   
Sbjct: 28  DAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLL 87

Query: 76  NSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
              L+   L +F  M+   T +  P++ T AS+ + C+     F     +H+  +     
Sbjct: 88  AKKLASQVLGLFSLMI---TENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFG 144

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
             P   + L+  YS+    D AK VF+ +  +D V + AMI G +QN R  +++ +F  M
Sbjct: 145 SSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQM 204

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             S V  T Y  S  L A  ++   +    +HG  V  GL     V   L+  Y + G +
Sbjct: 205 HKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNL 264

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A ++F + +   + I++N++++G AQ+G     L+LF  +++    PD  +  ++L+A
Sbjct: 265 IAAEQIFSK-MHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSA 323

Query: 313 LCNAGLAGESEKWIERMKVR--------------------YKLEPGLEHY---------- 342
             + G AG   K +    ++                    + +E   E++          
Sbjct: 324 CASVG-AGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVL 382

Query: 343 -TCLISAMGRAGRLEDAERIAMAMPFE---PDAAVWRALLSFSAIHGKADMASKMGKRLI 398
              ++ A G+ G L ++  I + M  E   P+   + ++L      G  D+  ++  ++I
Sbjct: 383 WNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI 442

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
             + +  + YV  + ++    +  E+   R +++  R+R+E   SW          +AG 
Sbjct: 443 K-SGFQFNVYV-CSVLIDMYAKHGELDTARGILQ--RLREEDVVSWT-------AMIAGY 491

Query: 459 RMHERTEDIYTKLAELMEECERLG 482
             H    D++ +  +L +E E  G
Sbjct: 492 TQH----DLFAEALKLFQEMENQG 511



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 164/374 (43%), Gaps = 10/374 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           + N L+T YS+   L  + ++F+ +   + +S+ +LIS  +    S +  L +     L 
Sbjct: 250 VCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFS-DRALQLFEKMQLD 308

Query: 95  FL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            + P+  T+ASL   CAS+   +  G  LHS  +K+ +        +L+  Y +    + 
Sbjct: 309 CMKPDCVTVASLLSACASVGAGYK-GKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIET 367

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A + F      +VV +  M+V + Q   L +S  +F  M+   +    Y     LR    
Sbjct: 368 AHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTS 427

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           L A++    IH   + SG   NV V + LID Y K G +  AR +  + L   + ++W A
Sbjct: 428 LGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL-QRLREEDVVSWTA 486

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           M+AGY Q    +  L+LF  +E +G   D   F + ++A C    A    + I       
Sbjct: 487 MIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISA-CAGIQALNQGQQIHAQSYIS 545

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA--- 390
                L     L+S   R GR +DA  +A       D   W AL+S  A  G  + A   
Sbjct: 546 GYSEDLSIGNALVSLYARCGRAQDA-YLAFEKIDAKDNISWNALISGFAQSGHCEEALQV 604

Query: 391 -SKMGKRLIDINPY 403
            S+M +  ++ N +
Sbjct: 605 FSQMNQAGVEANLF 618



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 136/303 (44%), Gaps = 9/303 (2%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           N +T   LF+ C + S + L    LH+   K     +   GS L+  Y      DNA K+
Sbjct: 9   NVQTYLWLFEGCFN-SGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKL 67

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA-AAELAA 216
           FD+I   +V  +  +I G          L +F+ M + +V       +  LRA +   A 
Sbjct: 68  FDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAP 127

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
            +    IH   +  G   + +V   LID Y K G V  A+ VF E L + +S++W AM++
Sbjct: 128 FQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVF-ERLFLKDSVSWVAMIS 186

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           G +Q G +   + LF  +      P  Y F +VL+A     L    E+ +    V++ L 
Sbjct: 187 GLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQ-LHGFIVKWGLS 245

Query: 337 PGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
              E + C  L++   R G L  AE+I   M    D   + +L+S  A  G +D A ++ 
Sbjct: 246 S--ETFVCNALVTLYSRWGNLIAAEQIFSKM-HRRDRISYNSLISGLAQRGFSDRALQLF 302

Query: 395 KRL 397
           +++
Sbjct: 303 EKM 305


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 204/568 (35%), Positives = 311/568 (54%), Gaps = 14/568 (2%)

Query: 18  PRI-----VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           PR+     VHA  + +     RS+   LIT    +  ++Y+  LF  +P P+   + ++I
Sbjct: 20  PRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVI 79

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
            + S   L L+      R  + +  P+  T  S+ K+CA LS A   G  +H  ++    
Sbjct: 80  KSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS-ALRIGKGVHCHAVVSGF 138

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               +  +ALV FYS+    + A++VFD + E+ +V + +++ GF QN    +++ VF  
Sbjct: 139 GLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQ 198

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR S            L A A+  A+     +H + +  GLD NV +GT LI+ Y + G 
Sbjct: 199 MRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGD 258

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVL 310
           V  AR VFD+ +   N  AW AM++ Y   G     +ELF+ +E   G  P+  +F+AVL
Sbjct: 259 VGKAREVFDK-MKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVL 317

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  +AGL  E     +RM   Y+L PG+EH+ C++  +GRAG L++A +    +     
Sbjct: 318 SACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGK 377

Query: 371 A---AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           A   A+W A+L    +H   D+  ++ KRLI + P +   +V+++N+ +  G+ DEV+ +
Sbjct: 378 ATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHI 437

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           R  M    +RK+ G S IEV+ K ++F  GD  H+ T +IY  L  L+  C+ +GY PV 
Sbjct: 438 RDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVS 497

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
           +E++H V + EK  AL YHSEKLA+AFGL+       T  IVKNLRIC DCH +FKYIS 
Sbjct: 498 EEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDVAIT--IVKNLRICEDCHSAFKYISI 555

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           V  R+I VRD  R+H F NGSC+C D W
Sbjct: 556 VSNRQITVRDKLRFHHFQNGSCSCLDYW 583


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/482 (38%), Positives = 274/482 (56%), Gaps = 4/482 (0%)

Query: 96   LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            LP+  T   L + CA L  A   G  LH+ + K       F  ++LVH Y      ++A 
Sbjct: 801  LPDTHTYPPLIQACARLL-ALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAH 859

Query: 156  KVFDE--IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
            KVFDE  +R R++V + +M+  FA N R  + L+VF +M   D     + +   L A AE
Sbjct: 860  KVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAE 919

Query: 214  LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
              A+   R +H +    GL  N  V   LID Y K G V+DARR+F+E       ++W +
Sbjct: 920  FGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTS 979

Query: 274  MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
            ++ G A  G     LELF L+E     P E + + VL A  + GL  +  ++ +RMK  Y
Sbjct: 980  LIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDY 1039

Query: 334  KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
             + P +EH  C++  +GRAGR+E+A    + MP EP+A VWR LL   A+H K ++    
Sbjct: 1040 GISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVA 1099

Query: 394  GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHV 453
             +RL++++P     YV+++N+ + VG W +V  +RK M   RVRK  G S +E++  V+ 
Sbjct: 1100 WERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYE 1159

Query: 454  FLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALA 513
            F+ GDR H  +E IY  LAE+ E   R GY+P    +L ++ + EK  AL YHSE+LA+A
Sbjct: 1160 FVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIA 1219

Query: 514  FGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
            F L+   P G  +RI+KNLR+C DCH +F  IS+V +REI+VRD +R+H F  G+C+C D
Sbjct: 1220 FALLKSLP-GIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKD 1278

Query: 574  LW 575
             W
Sbjct: 1279 YW 1280


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 303/585 (51%), Gaps = 42/585 (7%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIP----SPNIVSWTALISAHSNSPLSLNIFL 85
           + D   ++ L+  Y++   +  + RLF+ +      PN++SW  +I+  ++S L     L
Sbjct: 177 EPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVL 236

Query: 86  SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY 145
             L      F P+  T++S+      L    + G+ +H   +K  L       SAL+  Y
Sbjct: 237 MFLDMHLRGFEPDGTTISSVLPAVGDLED-LVMGILIHGYVIKQGLVSDKCVSSALIDMY 295

Query: 146 SRFRSPDNAKKVFDEI-----------------------------------RERDVVCYG 170
            +        +VFD++                                    E +VV + 
Sbjct: 296 GKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWT 355

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           +MI   +QN R +++L +F +M+ + V      +   L A   +AA+   +  H  ++  
Sbjct: 356 SMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR 415

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           G+  +V VG+ LID Y K G +  +R  FD  +   N + WNA++AGYA  G     +E+
Sbjct: 416 GISTDVYVGSALIDMYAKCGRIQASRICFD-GIPTKNLVCWNAVIAGYAMHGKAKEAMEI 474

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           F L++  G  PD  SF  VL+A   +GL  E   +   M  +Y +E  +EHY C+++ + 
Sbjct: 475 FDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLS 534

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           RAG+LE A  +   MP  PDA VW ALLS   +H    +     ++L ++ P +   Y++
Sbjct: 535 RAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYIL 594

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
           ++N+ +  G W+EV  VR +MK++ +RK  G SWIEVK KVH+ LAGD+ H +   I  K
Sbjct: 595 LSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEK 654

Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
           L +L  E ++LGY P  + +L +V +++K + L  HSEKLA+ FGL++  P G  L+++K
Sbjct: 655 LDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLN-TPPGYPLQVIK 713

Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           NLRIC DCH   K+IS    REI VRD NR+H F  G+C+CGD W
Sbjct: 714 NLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 9/253 (3%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           L  T ASLS         H+  LK  L +     + L+  Y+      +A  V D + E 
Sbjct: 22  LNSTTASLSQT----RQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEP 77

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
           +V  +  +I  F++  +   +LS F+ M +  +      +  A++A A L+A++  R +H
Sbjct: 78  NVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVH 137

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           G A VSG D +  V + L+  Y K   + DA RVFD      + ++W+A++A YA+QG  
Sbjct: 138 GIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEP-DVVSWSALVAAYARQGCV 196

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
                LF  +   G  P+  S+  ++    ++GL  E+      M +R   EP     T 
Sbjct: 197 DEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLR-GFEPD---GTT 252

Query: 345 LISAMGRAGRLED 357
           + S +   G LED
Sbjct: 253 ISSVLPAVGDLED 265



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 5/186 (2%)

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           A++ Q R  H H + +GL  +  + T L+  Y      +DA  V D  +   N  +++ +
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDL-VPEPNVFSFSTL 85

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRY 333
           +  +++       L  F  +  RG  PD     + + A   AGL+  +  + +  +    
Sbjct: 86  IYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGLSALKPARQVHGIASVS 143

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
             +      + L+    +  ++ DA R+   M FEPD   W AL++  A  G  D A ++
Sbjct: 144 GFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAAYARQGCVDEAKRL 202

Query: 394 GKRLID 399
              + D
Sbjct: 203 FSEMGD 208


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 325/562 (57%), Gaps = 13/562 (2%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           R VHA A++    ++ ++   ++  Y K   +  + ++F+ +   N VSW A+I  ++  
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406

Query: 76  -NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHD 133
            ++  +L +F  M+       + +   LA+L   C  L   FL  G  +H L +++ L  
Sbjct: 407 GDATEALALFKRMVGEGV--DVTDVSVLAAL-HACGEL--GFLDEGRRVHELLVRIGLES 461

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                +AL+  Y + +  D A +VFDE+  +  V + AMI+G  QN    D++ +F+ M+
Sbjct: 462 NVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQ 521

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             +V    + +   + A A+++   Q R IHG+++   LD++V V T LID Y K G VS
Sbjct: 522 LENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVS 581

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            AR +F+      + I WNAM+ GY   G     +ELF  ++  G  P+E +FL+VL+A 
Sbjct: 582 IARSLFNSARD-RHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSAC 640

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            +AGL  E +++   MK  Y LEPG+EHY  ++  +GRAG+L +A      MP EP  +V
Sbjct: 641 SHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISV 700

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           + A+L    +H   ++A +  +R+ ++ P +   +V++AN+ +    W +VA VR  M+ 
Sbjct: 701 YGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEK 760

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           + ++K  G S +++K ++H F +G   H++ +DIY +LA+L+EE + +GYVP  D  +H+
Sbjct: 761 KGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDS-IHD 819

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V D  K + L  HSEKLA+A+GL+  AP G T++I KNLR+C+DCH + K IS V  REI
Sbjct: 820 VEDDVKAQLLNTHSEKLAIAYGLIRTAP-GTTIQIKKNLRVCKDCHNATKLISLVTGREI 878

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD+ R+H F +G C+CGD W
Sbjct: 879 IMRDIQRFHHFKDGKCSCGDYW 900



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 198/418 (47%), Gaps = 7/418 (1%)

Query: 19  RIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA+      +  ++    + N Y+K      + R+F+ +P+ + V+W AL++ ++ +
Sbjct: 245 RAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARN 304

Query: 78  PLSLNIFLSMLR-HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            L+      ++R        P+  TL S+   CA  + A      +H+ +++    ++  
Sbjct: 305 GLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACAD-AQALGACREVHAFAVRGGFDEQVN 363

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +A++  Y +  + D+A+KVFD +++R+ V + AMI G+A+N    ++L++F  M    
Sbjct: 364 VSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEG 423

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V  T   V  AL A  EL  +++ R +H   V  GL+ NV V   LI  Y K      A 
Sbjct: 424 VDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAA 483

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VFDE L     ++WNAM+ G  Q G     + LF  +++    PD ++ ++++ AL + 
Sbjct: 484 QVFDE-LGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADI 542

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               ++ +WI    +R  L+  +   T LI    + GR+  A R       +     W A
Sbjct: 543 SDPLQA-RWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIA-RSLFNSARDRHVITWNA 600

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPY-DDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           ++     HG   +A ++ + +       +++ ++ V +  S  G  DE  E    MK+
Sbjct: 601 MIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKE 658



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 207/449 (46%), Gaps = 31/449 (6%)

Query: 59  IPSPNIVSWTA--------LISAHSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKT 108
           +PSP   +  A        L +A S S L  +L  F +M   P     P  RT  SL K 
Sbjct: 177 LPSPITAATHAAPDDHHARLRAAASRSDLRGALAAFAAM--SPASGSGPVLRTFTSLLKL 234

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
           CA+ +     G ++H+      L  +    +AL + Y++ R P +A++VFD +  RD V 
Sbjct: 235 CAARAD-LATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVA 293

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS--GALRAAAELAAMEQCRVIHGH 226
           + A++ G+A+N     ++ +   M+  D G     V+    L A A+  A+  CR +H  
Sbjct: 294 WNALVAGYARNGLAEAAVGMVVRMQEED-GERPDAVTLVSVLPACADAQALGACREVHAF 352

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
           AV  G D  V V T ++D Y K G V  AR+VFD  +   NS++WNAM+ GYA+ GD + 
Sbjct: 353 AVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFD-GMQDRNSVSWNAMIKGYAENGDATE 411

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            L LF  +   G    + S LA L A    G   E  + +  + VR  LE  +     LI
Sbjct: 412 ALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRR-VHELLVRIGLESNVNVMNALI 470

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
           +   +  R + A ++   + ++   + W A++     +G ++ A ++  R+   N   DS
Sbjct: 471 TMYCKCKRTDLAAQVFDELGYKTRVS-WNAMILGCTQNGSSEDAVRLFSRMQLENVKPDS 529

Query: 407 AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
            + +V+ + +       +A++   ++ R +     R  + +   V+V  A   M+ +   
Sbjct: 530 -FTLVSIIPA-------LADISDPLQARWIHGYSIR--LHLDQDVYVLTALIDMYAKCGR 579

Query: 467 IYTKLAELMEECERLGYVPVWDEMLHNVG 495
           +   +A  +    R  +V  W+ M+H  G
Sbjct: 580 V--SIARSLFNSARDRHVITWNAMIHGYG 606


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 189/545 (34%), Positives = 301/545 (55%), Gaps = 10/545 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHP 91
           + N L+  YSK + +  + +LF  +P  + +S+  L++ ++       SL +F  +    
Sbjct: 336 VANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKEL---Q 392

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
              F       A+L  + A++S     G  +HS ++      +   G++LV  Y++    
Sbjct: 393 FTGFDRRNFPFATLL-SIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEF 451

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A ++F ++  +  V + AMI  + Q     D L +F +M+ + +G+     +  +RA 
Sbjct: 452 GEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRAC 511

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A LA++   + +H H + SG   NV  G+ L+D Y K G + DA ++F E + V NS++W
Sbjct: 512 ASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQE-MPVRNSVSW 570

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NA+++ YAQ GD    L LF  +   G  PD  S L++L A  + GL  E  ++ + M  
Sbjct: 571 NALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTR 630

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            YKL P  EHY   I  + R GR ++AE++   MPFEPD  +W ++L+   IH   ++A 
Sbjct: 631 IYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAK 690

Query: 392 KMGKRLIDINPYDDSA-YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
           K   +L ++    D+A YV ++N+ +  G WD V +V+K M++R V+K    SW+E+K K
Sbjct: 691 KAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHK 750

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
            HVF A D+ H +  +I  KL EL E+  + GY P     LHNV +  K E+L YHSE++
Sbjct: 751 THVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERI 810

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AF L+S  P G  + ++KNLR C DCH + K IS++V REI VRD +R+H F +G CT
Sbjct: 811 AIAFALIS-TPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCT 869

Query: 571 CGDLW 575
           C D W
Sbjct: 870 CRDYW 874



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 187/390 (47%), Gaps = 11/390 (2%)

Query: 13  NTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           ++  + R VH+  +K    +   + N+L+ +Y K+  L  + +LFN IP  + V++ AL+
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 72  SAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           + +S       ++N+F  M     + + P + T A++      L     FG  +H   +K
Sbjct: 272 TGYSKEGFNREAINLFFKM---QEVGYRPTEFTFAAILTAGIQLDD-IEFGQQVHGFVVK 327

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
            +     F  +AL+ FYS+      A K+F E+ E D + Y  ++  +A N R+ +SL +
Sbjct: 328 CNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLEL 387

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           F +++ +      +  +  L  AA    ++  R IH   +V+     ++VG  L+D Y K
Sbjct: 388 FKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAK 447

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G   +A R+F + L++ +S+ W AM++ Y Q+G     L+LF  ++      D  ++ +
Sbjct: 448 CGEFGEANRIFSD-LAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYAS 506

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           ++ A C +  +    K +    +       +   + L+    + G ++DA ++   MP  
Sbjct: 507 IVRA-CASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVR 565

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLI 398
            ++  W AL+S  A +G  D   ++ + ++
Sbjct: 566 -NSVSWNALISAYAQNGDGDCTLRLFEEMV 594



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 165/365 (45%), Gaps = 18/365 (4%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR L      ++I+  N +I  Y KS  LS +  LF+ +     V+WT LI  ++ +   
Sbjct: 120 ARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQF 179

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASL---FKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             +  +F+ M RH      P+  +LA+L   F    S++        +HS  +KL     
Sbjct: 180 REAFGLFIEMGRH---GIDPDHVSLATLLSGFTEFDSVNEV----RQVHSHVIKLGYDST 232

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               ++L+  Y + RS   A ++F++I ERD V + A++ G+++     +++++F  M+ 
Sbjct: 233 LVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQE 292

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                T +  +  L A  +L  +E  + +HG  V      NV V   L+D Y K   V +
Sbjct: 293 VGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVE 352

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A ++F E +  ++ I++N ++  YA  G     LELF  L+  GF    + F A L ++ 
Sbjct: 353 ASKLFYE-MPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPF-ATLLSIA 410

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
              L  +  + I    +       +     L+    + G   +A RI   +  +  +  W
Sbjct: 411 AISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQ-SSVPW 469

Query: 375 RALLS 379
            A++S
Sbjct: 470 TAMIS 474



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 132/269 (49%), Gaps = 9/269 (3%)

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           H   F  + ++  Y +  +   A+ +FD + +R  V +  +I G+AQN++  ++  +F +
Sbjct: 129 HKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIE 188

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M    +      ++  L    E  ++ + R +H H +  G D  ++V   L+D Y K   
Sbjct: 189 MGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRS 248

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  A ++F++ +   +S+ +NA++ GY+++G     + LF  ++  G+ P E++F A+LT
Sbjct: 249 LGLAFQLFND-IPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILT 307

Query: 312 ALCNAGLAGESEKWIERMK---VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
               AG+  +  ++ +++    V+      +     L+    +  R+ +A ++   MP E
Sbjct: 308 ----AGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMP-E 362

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRL 397
            D   +  L++  A +G+   + ++ K L
Sbjct: 363 VDGISYNVLVTCYAWNGRVKESLELFKEL 391


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 320/561 (57%), Gaps = 12/561 (2%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN--IVSWTALISAHSNS 77
           VH+  +K   A DR I N LI  Y K   ++ +  +F+ I   N  ++SW  +I A++ +
Sbjct: 46  VHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQN 105

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            L   +L++F +M        + NQ TL +    CASL  +   G  +H++++   L   
Sbjct: 106 GLGKEALHLFKTM---DLEGVIANQVTLINAIDACASLP-SEEEGRIVHAIAVDKRLESD 161

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              G++LV+ + + ++ D A+ VFD +  +++V +  M+  ++QN +   ++ VF  M  
Sbjct: 162 TMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDL 221

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V          + A A LAA  + R++H     SG+  +V +GT ++  YGK G + +
Sbjct: 222 EGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDN 281

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR +FD +L   N++ W+A++A YAQ G ++  +EL+H +   G   +  +FL +L A  
Sbjct: 282 ARAIFD-SLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACS 340

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AG + +   +   M   + + P  EHY  LI  +GR+G+L+ +E +  +MP+EPD++ W
Sbjct: 341 HAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAW 400

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    +HG  D  +++ + + +++P D   Y++++N+ S  GR DE    RK M+ R
Sbjct: 401 LALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLR 460

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            + K+ G S IEVK +VH F+A  ++H +   I+ ++  L    +  GYV     +L +V
Sbjct: 461 GITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVLRDV 520

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + EK + LWYHSE+LA+AFGL+S  P G  L IVKNLR+C DCH + K IS+VV R+IV
Sbjct: 521 EEEEKEQLLWYHSERLAIAFGLIS-TPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKIV 579

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD  R+H F NG+C+CGD W
Sbjct: 580 VRDAIRFHHFENGACSCGDYW 600



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 141/288 (48%), Gaps = 8/288 (2%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T   L K CA  S A L G  +HS  +K          + L+  Y +      A+ VFD+
Sbjct: 26  TYVLLLKKCAD-SKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQ 84

Query: 161 IRER--DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
           I+E+  DV+ +  +I  + QN    ++L +F  M    V +    +  A+ A A L + E
Sbjct: 85  IQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEE 144

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           + R++H  AV   L+ + +VGT L++ +GK   V  AR VFD +L   N + WN M+A Y
Sbjct: 145 EGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFD-SLPRKNLVTWNNMVAVY 203

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP- 337
           +Q       +++F  +++ G  PD  +FL ++ A   A LA  +E  +    +     P 
Sbjct: 204 SQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDAC--AALAAHTEGRMVHDDITASGIPM 261

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
            +   T ++   G+ GRL++A  I  ++  + +   W A+L+  A +G
Sbjct: 262 DVALGTAVMHFYGKCGRLDNARAIFDSLG-KKNTVTWSAILAAYAQNG 308


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/562 (32%), Positives = 310/562 (55%), Gaps = 7/562 (1%)

Query: 17   DPRIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
            + +IVHA  + +   D  I  N L+T Y K  ++  + ++   +P P+ V+W ALI  H+
Sbjct: 1167 ESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHA 1226

Query: 76   NS--PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
             +  P        ++R   +    N  T+ S+   C++       G+ +H+  +      
Sbjct: 1227 ENEEPNEAVKAYKLIREKGIP--ANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFES 1284

Query: 134  KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
              +  ++L+  Y++    +++  +FD +  +  + + AM+   A +    ++L +F +MR
Sbjct: 1285 DDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMR 1344

Query: 194  SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
            +  V    +  SG L A A LA +E+ + +HG  +  G + ++ V    +D YGK G + 
Sbjct: 1345 NVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMH 1404

Query: 254  DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            D  ++  + ++  + ++WN +++ +A+ G      E FH +   G  PD  +F+++L+A 
Sbjct: 1405 DVLKMLPQPIN-RSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSAC 1463

Query: 314  CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
             + GL  E   + + M   + + PG+EH  C+I  +GR+GRL  AE     MP  P+   
Sbjct: 1464 NHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLA 1523

Query: 374  WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
            WR+LL+   IHG  ++A K  + L++++P DDSAYV+ +NV +  G+W++V  +RK M  
Sbjct: 1524 WRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGS 1583

Query: 434  RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
              ++K+   SW+++K KVH F  G++ H +   I  KL ELM+  +  GYVP     LH+
Sbjct: 1584 NNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHD 1643

Query: 494  VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
            + + +K   LW HSE+LALAFGL++  P   TLRI KNLR+C DCH  +K++S +V R+I
Sbjct: 1644 MDEEQKEYNLWNHSERLALAFGLIN-TPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKI 1702

Query: 554  VVRDVNRYHRFLNGSCTCGDLW 575
            V+RD  R+H F  G C+CGD W
Sbjct: 1703 VLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 211/416 (50%), Gaps = 9/416 (2%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSF 95
           L+  +SK   +  +  LF  +   ++VSW A+I  ++       S  +F SMLR      
Sbjct: 172 LVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRG---GL 228

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           +P+  TL S+ +  A      +    +H +  +L           L++ Y++  S  +AK
Sbjct: 229 VPDCYTLGSVLRASAE-GGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAK 287

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRL-VDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
            +   + ++D+    A+I G+A      VD+L +F +M   ++G     +   L   A L
Sbjct: 288 DLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANL 347

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           A+      IH  A+      +V +G  LID Y K+G + DA+R FDE +   N I+W ++
Sbjct: 348 ASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDE-MEEKNVISWTSL 406

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           ++GYA+ G     + L+  +E +GF P++ +FL++L A  + GL  E  +    M  +Y 
Sbjct: 407 ISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYN 466

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           ++P  EHY+C++    R G LE+A  +   +  + +A++W A+L  S+I+G   +  +  
Sbjct: 467 IKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAA 526

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
             L ++ P +   YV++A++ S  G WD+  ++RK+M++R  +K  G S+ +   K
Sbjct: 527 SNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 176/379 (46%), Gaps = 11/379 (2%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            VH   +K+    D  +   L+  Y    L+  + +LF  +P  N+VSWT+L+  +S+S  
Sbjct: 868  VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 927

Query: 80   S---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
                LN++  M R   +S   NQ T A++  +C  L    L G  +    ++    D   
Sbjct: 928  PGEVLNVYQRM-RQEGVS--GNQNTFATVTSSCGLLEDQVL-GYQVLGHIIQYGFEDSVS 983

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
              ++L+  +S F S + A  VFD + E D++ + AMI  +A +    +SL  F  MR   
Sbjct: 984  VANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLH 1043

Query: 197  VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
              +    +S  L   + +  ++  R IHG  V  GLD NV +   L+  Y +AG   DA 
Sbjct: 1044 NETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAE 1103

Query: 257  RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             VF + ++  + I+WN+MMA Y Q G     L++   L   G   +  +F + L A  N 
Sbjct: 1104 LVF-QAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNP 1162

Query: 317  GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
                ES K +  + +       L     L++  G+ G + +A+++   MP +PD   W A
Sbjct: 1163 ECLIES-KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNA 1220

Query: 377  LLSFSAIHGKADMASKMGK 395
            L+   A + + + A K  K
Sbjct: 1221 LIGGHAENEEPNEAVKAYK 1239



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 167/371 (45%), Gaps = 11/371 (2%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFL--SML 88
           +D  +   LI  Y K   +  +  +F+ +P  ++VSWTA++S +S +      F+  S +
Sbjct: 63  SDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDM 122

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           RH  +    NQ T  S  + C SL      G+ +     K    +  F  SALV F+S+ 
Sbjct: 123 RHCGVK--ANQFTYGSALRACTSL-RCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKC 179

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              ++A  +F  + ERDVV + AMI G+A      DS  +F  M    +    Y +   L
Sbjct: 180 GKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVL 239

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           RA+AE   +     IHG     G     IV   LI+ Y K G +  A+ +  + +   + 
Sbjct: 240 RASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDL-RKGMLKKDL 298

Query: 269 IAWNAMMAGYAQQGDQST-VLELFHLLEMRGFAPDEYSFLAVLTALCN-AGLAGESEKWI 326
            +  A++ GYA +G  S   L+LF  +       D+    ++L    N A  A  ++  I
Sbjct: 299 FSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQ--I 356

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
               ++Y+    +     LI    ++G +EDA+R    M  E +   W +L+S  A HG 
Sbjct: 357 HAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME-EKNVISWTSLISGYAKHGY 415

Query: 387 ADMASKMGKRL 397
             MA  + K++
Sbjct: 416 GHMAVSLYKKM 426



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 207/473 (43%), Gaps = 34/473 (7%)

Query: 37   NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
            N LI  YSK   + ++  +F+ +   N  SW+ ++S +    L   ++ +F  M     L
Sbjct: 783  NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMW---GL 839

Query: 94   SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
               PN   +ASL   C+   +    G  +H   +K  +    + G+ALVHFY       N
Sbjct: 840  GVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYN 899

Query: 154  AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
            A+K+F+E+ + +VV + +++VG++ +    + L+V+  MR   V       +    +   
Sbjct: 900  AQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGL 959

Query: 214  LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
            L        + GH +  G + +V V   LI  +     V +A  VFD +++  + I+WNA
Sbjct: 960  LEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFD-HMNECDIISWNA 1018

Query: 274  MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW---IERMK 330
            M++ YA  G     L  FH   MR    +  S    L++L +   + ++ KW   I  + 
Sbjct: 1019 MISAYAHHGLCRESLRCFHW--MRHLHNETNS--TTLSSLLSVCSSVDNLKWGRGIHGLV 1074

Query: 331  VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            V+  L+  +     L++    AGR EDAE +  AM  E D   W ++++     GK    
Sbjct: 1075 VKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT-ERDLISWNSMMACYVQDGKCLDG 1133

Query: 391  SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
             K+   L+ +    +  +V  A+ L+     + + E + V            + I V G 
Sbjct: 1134 LKILAELLQMGKVMN--HVTFASALAACSNPECLIESKIV-----------HALIIVAGF 1180

Query: 451  VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN--VGDREKRE 501
                + G+ +      +Y KL  +ME  + L  +P  D +  N  +G   + E
Sbjct: 1181 HDFLIVGNAL----VTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENE 1229



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 176/367 (47%), Gaps = 17/367 (4%)

Query: 34   SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
            S+ N+LI+ +S  + +  +  +F+H+   +I+SW A+ISA+++  L   SL  F  M RH
Sbjct: 983  SVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM-RH 1041

Query: 91   PTLSFLPNQR--TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                 L N+   T  S   +  S      +G  +H L +KL L       + L+  YS  
Sbjct: 1042 -----LHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEA 1096

Query: 149  RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS--G 206
               ++A+ VF  + ERD++ + +M+  + Q+ + +D L + A++    +G  M  V+   
Sbjct: 1097 GRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELL--QMGKVMNHVTFAS 1154

Query: 207  ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            AL A +    + + +++H   +V+G    +IVG  L+  YGK G++ +A++V  + +   
Sbjct: 1155 ALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVL-QTMPQP 1213

Query: 267  NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
            + + WNA++ G+A+  + +  ++ + L+  +G   +  + ++VL A        +    I
Sbjct: 1214 DRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPI 1273

Query: 327  ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
                V    E        LI+   + G L  +  I   +        W A+++ +A HG 
Sbjct: 1274 HAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG-NKSPITWNAMVAANAHHGC 1332

Query: 387  ADMASKM 393
             + A K+
Sbjct: 1333 GEEALKI 1339



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 138/270 (51%), Gaps = 8/270 (2%)

Query: 119  GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
            G +LH+  +  S++   F  + L++ YS+F + ++A+ VFDE+R R+   +  M+ G+ +
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 179  NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVI 237
                 +++ +F  M    V    + V+  + A +    M ++   +HG  V +G+  +V 
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 238  VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
            VGT L+  YG  G+V +A+++F+E +   N ++W ++M GY+  G+   VL ++  +   
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEE-MPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQE 941

Query: 298  GFAPDEYSFLAVLTALCNAGLAGESEKWIERMK--VRYKLEPGLEHYTCLISAMGRAGRL 355
            G + ++ +F A +T+ C  GL  +     + +   ++Y  E  +     LIS       +
Sbjct: 942  GVSGNQNTF-ATVTSSC--GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSV 998

Query: 356  EDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
            E+A  +   M  E D   W A++S  A HG
Sbjct: 999  EEACYVFDHMN-ECDIISWNAMISAYAHHG 1027



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 3/181 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L+   +  A +Q  +IH H + +G   ++ + T LI  Y K G V  AR VFD  +   +
Sbjct: 37  LQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFD-GMPERS 95

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W AM++GY+Q G       LF  +   G   +++++ + L A C +    +    ++
Sbjct: 96  VVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRA-CTSLRCLDMGIQVQ 154

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
               + +    L   + L+    + G++EDA  +   M  E D   W A++   A+ G A
Sbjct: 155 GCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTM-MERDVVSWNAMIGGYAVQGFA 213

Query: 388 D 388
           D
Sbjct: 214 D 214



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 3/196 (1%)

Query: 184 DSLSVFADMRSSDVG-STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
           D   VF   + +D G   +  V+  L+  +E+ +    + +H   +V  ++  +     L
Sbjct: 726 DIAKVFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTL 785

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           I+ Y K G +  AR VFDE +   N  +W+ M++GY + G     + LF  +   G  P+
Sbjct: 786 INMYSKFGNIEHARYVFDE-MRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPN 844

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
            +   +++TA   +G   +    +    V+  +   +   T L+   G  G + +A+++ 
Sbjct: 845 GFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLF 904

Query: 363 MAMPFEPDAAVWRALL 378
             MP + +   W +L+
Sbjct: 905 EEMP-DHNVVSWTSLM 919


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 311/557 (55%), Gaps = 15/557 (2%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH-SNSPLSLNIFLS--- 86
           +D  + + LI  YSK   L+ + +LF+ IP  N+VSWT++IS +  N      +FL    
Sbjct: 119 SDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEF 178

Query: 87  MLRHPT-------LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +L   T       +    +   L  +   CA +    +    +H L++K         G+
Sbjct: 179 LLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTE-CVHGLAVKKGFEGCLAVGN 237

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVG 198
            L+  Y++      ++KVFD + E DV  + ++I  +AQN   V++ S+F+DM +  +V 
Sbjct: 238 TLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVR 297

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                +S  L A A   A++  + IH   V   L+ N++VGT ++D Y K G V  AR+ 
Sbjct: 298 YNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKA 357

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD  L   N  +W  M+AGY   G     +++F+ +   G  P+  +F++VL A  +AGL
Sbjct: 358 FDR-LKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGL 416

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E   W  +MK  + +EPG+EHY+C++  +GRAG L++A  +   M  +PD  VW +LL
Sbjct: 417 LKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLL 476

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               IH   ++     ++L  ++P +   YV+++N+ +  GRWD+V  +R +MK+  + K
Sbjct: 477 GACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLK 536

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
             G S +E KG+VHVFL GD+ H + E IY  L EL  + + +GY+P    +L++V   E
Sbjct: 537 TPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEE 596

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K   L  HSEKLA+AFG+++  P G  ++I+KNLRIC DCH + K IS++V REIV+RD 
Sbjct: 597 KGMVLRVHSEKLAVAFGIMNSVP-GSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDS 655

Query: 559 NRYHRFLNGSCTCGDLW 575
            R+H F +G C+CGD W
Sbjct: 656 KRFHHFKDGLCSCGDYW 672



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 171/376 (45%), Gaps = 26/376 (6%)

Query: 57  NHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
            ++   ++ SW ++I+  + S  SL    +      LS  PN+ T     K+C+SL +  
Sbjct: 44  KYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSL-YDL 102

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
             G  +H  +         F  SAL+  YS+    ++A+K+FDEI ER+VV + +MI G+
Sbjct: 103 CAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGY 162

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMY-------------CVSGALRAAAELAAMEQCRVI 223
            QN R  +++ +F +    D   T Y              +   + A A +        +
Sbjct: 163 VQNERAREAVFLFKEFLLVD--ETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECV 220

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           HG AV  G +  + VG  L+D Y K G +S +R+VFD  +   +  +WN+++A YAQ G 
Sbjct: 221 HGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFD-GMEETDVCSWNSLIAVYAQNGL 279

Query: 284 QSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                 LF  +  RG    +  +  AVL A  ++G A +  K I    V+ +LE  L   
Sbjct: 280 SVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSG-ALQIGKCIHDQVVKMELEDNLVVG 338

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DI 400
           T ++    + GR+E A R A       +   W  +++   +HG    A K+   +I   I
Sbjct: 339 TSIVDMYCKCGRVEMA-RKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGI 397

Query: 401 NPYDDSAYVIVANVLS 416
            P     Y+   +VL+
Sbjct: 398 KP----NYITFVSVLA 409



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 125/265 (47%), Gaps = 16/265 (6%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH  A+K   +   ++ N L+  Y+K   +S S ++F+ +   ++ SW +LI+ ++ + L
Sbjct: 220 VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGL 279

Query: 80  SL---NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           S+   ++F  M++   + +  N  TL+++   CA  S A   G  +H   +K+ L D   
Sbjct: 280 SVEAFSLFSDMVKRGEVRY--NAVTLSAVLLACAH-SGALQIGKCIHDQVVKMELEDNLV 336

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+++V  Y +    + A+K FD ++ ++V  +  M+ G+  +    +++ VF +M    
Sbjct: 337 VGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCG 396

Query: 197 VGSTMYCVSGALRAAAELAAMEQC-----RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           +          L A +    +++      ++     V  G++      + ++D  G+AG 
Sbjct: 397 IKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHY----SCMVDLLGRAGY 452

Query: 252 VSDARRVFDENLSVLNSIAWNAMMA 276
           + +A  +  E     + I W +++ 
Sbjct: 453 LKEAYGLIQEMKVKPDFIVWGSLLG 477



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 19/247 (7%)

Query: 153 NAKKVFDE-IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG---STMYCVSGAL 208
           N + +F + + +  V  + ++I  FA++   + +L  F+ MR   +    ST  C   + 
Sbjct: 37  NLRSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSC 96

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            +  +L A +Q   IH  A V G   ++ V + LID Y K G ++DAR++FDE +   N 
Sbjct: 97  SSLYDLCAGKQ---IHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDE-IPERNV 152

Query: 269 IAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYS---------FLAVLTALCNAGL 318
           ++W +M++GY Q       + LF   L +     DE            L  + + C    
Sbjct: 153 VSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVC 212

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
                + +  + V+   E  L     L+ A  + G +  + ++   M  E D   W +L+
Sbjct: 213 VKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME-ETDVCSWNSLI 271

Query: 379 SFSAIHG 385
           +  A +G
Sbjct: 272 AVYAQNG 278


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 189/545 (34%), Positives = 303/545 (55%), Gaps = 10/545 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHP 91
           + N L+  YSK + +  + +LF  +P  + +S+  LI+    +     SL +F  +    
Sbjct: 277 VANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFREL---Q 333

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
              F   Q   A+L    A+ S     G  +HS ++      +   G++LV  Y++    
Sbjct: 334 FTRFDRRQFPFATLLSIAAN-SLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKF 392

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A ++F ++  +  V + A+I G+ Q     D L +F +M  + +G+     +  LRA 
Sbjct: 393 GEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRAC 452

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A LA++   + +H   + SG   NV  G+ L+D Y K G + +A ++F E + V NS++W
Sbjct: 453 ANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQE-MPVRNSVSW 511

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NA+++ YAQ GD    L  F  +   G  P+  SFL++L A  + GL  E  ++   M  
Sbjct: 512 NALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQ 571

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            YKLEP  EHY  ++  + R+GR ++AE++   MPFEPD  +W ++L+   IH   ++A 
Sbjct: 572 VYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAI 631

Query: 392 KMGKRLIDINPYDDSA-YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
           K   +L ++    D+A YV ++N+ +  G WD V +V+K +++R +RK    SW+E+K K
Sbjct: 632 KAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQK 691

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
            HVF A D  H +T++I  KL EL ++ E  GY P     LHNV +  K E+L YHSE++
Sbjct: 692 THVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERI 751

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AF L+S  P+G  + ++KNLR C DCH + K IS++V REI VRD +R+H F +GSC+
Sbjct: 752 AIAFALIS-TPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCS 810

Query: 571 CGDLW 575
           C D W
Sbjct: 811 CKDYW 815



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 177/367 (48%), Gaps = 10/367 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           + N+L+ +Y K+  L  +  LF H+   + V++ AL++ +S       ++N+F  M    
Sbjct: 176 VCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKM---Q 232

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            L F P++ T A++      +     FG  +HS  +K +     F  +AL+ FYS+    
Sbjct: 233 DLGFRPSEFTFAAVLTAGIQMDD-IEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRI 291

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A+K+F E+ E D + Y  +I   A N R+ +SL +F +++ +      +  +  L  A
Sbjct: 292 VEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIA 351

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A    +E  R IH  A+V+     V+VG  L+D Y K     +A R+F  +L+  +S+ W
Sbjct: 352 ANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIF-ADLAHQSSVPW 410

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            A+++GY Q+G     L+LF  +       D  ++ ++L A  N       ++   R+ +
Sbjct: 411 TALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRI-I 469

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           R      +   + L+    + G +++A ++   MP   ++  W AL+S  A +G    A 
Sbjct: 470 RSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVR-NSVSWNALISAYAQNGDGGHAL 528

Query: 392 KMGKRLI 398
           +  +++I
Sbjct: 529 RSFEQMI 535



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 133/269 (49%), Gaps = 9/269 (3%)

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           H      + ++  Y +  +   A+ +FD + +R VV +  +I G+AQ++R +++ ++FAD
Sbjct: 70  HKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFAD 129

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M    +      ++  L    E  ++ +   +HGH V  G D  ++V   L+D Y K   
Sbjct: 130 MCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRS 189

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  A  +F ++++  +++ +NA++ GY+++G     + LF  ++  GF P E++F AVLT
Sbjct: 190 LGLACHLF-KHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLT 248

Query: 312 ALCNAGLAG---ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
               AG+     E  + +    V+      +     L+    +  R+ +A ++   MP E
Sbjct: 249 ----AGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-E 303

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRL 397
            D   +  L++  A +G+ + + ++ + L
Sbjct: 304 VDGISYNVLITCCAWNGRVEESLELFREL 332



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 135/286 (47%), Gaps = 14/286 (4%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRHPTL 93
           N +I  Y KS  LS +  LF+ +   ++V+WT LI   + H+    + N+F  M RH   
Sbjct: 77  NTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRH--- 133

Query: 94  SFLPNQRTLASL---FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
             +P+  TLA+L   F    S++        +H   +K+         ++L+  Y + RS
Sbjct: 134 GMVPDHITLATLLSGFTEFESVNEV----AQVHGHVVKVGYDSTLMVCNSLLDSYCKTRS 189

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
              A  +F  + E+D V + A++ G+++     D++++F  M+      + +  +  L A
Sbjct: 190 LGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTA 249

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
             ++  +E  + +H   V      NV V   L+D Y K   + +AR++F E +  ++ I+
Sbjct: 250 GIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYE-MPEVDGIS 308

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +N ++   A  G     LELF  L+   F   ++ F  +L+   N+
Sbjct: 309 YNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANS 354


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/545 (34%), Positives = 307/545 (56%), Gaps = 15/545 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT----ALISAHSNSPLSLNIFLSMLRH 90
           + N+L + Y+K  LL  +LR+F+ +P  N+V+WT    AL SA      +L   ++M R 
Sbjct: 106 VSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRD 165

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
                 PN  T +S+   C +         ++H+ ++K  L    F  S+L+  Y +   
Sbjct: 166 ---GVAPNAYTFSSVLGACTTPG----MLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGD 218

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            D  ++VFDE+  RD+V + ++I GFAQ+   V ++ +F  M+ +   S    ++  LRA
Sbjct: 219 LDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRA 278

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
              +  +E  R +H H  V   DR++I+   L+D Y K G + DA  +F   +   + I+
Sbjct: 279 CTGMVMLEAGRQVHAH--VLKYDRDLILHNALLDMYCKCGSLEDADALF-HRMPQRDVIS 335

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W+ M++G AQ G     L +F L++ +G AP+  + + VL A  +AGL  +   +   MK
Sbjct: 336 WSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMK 395

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             + ++P  EH+ C++  +GRAG+L++A      M  EPD+ +WR LL    +H  A +A
Sbjct: 396 RLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLA 455

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
           +   + ++ + P D  A V+++N  + + +W +  +  K M+DR +RKE GRSWIE++ +
Sbjct: 456 AYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKR 515

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
           VHVF+AGD  H  ++ I  +L  L+   + LGYVP  + +L ++   +K + L YHSEK+
Sbjct: 516 VHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKM 575

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+ FG +  A  GK +RI+KNLRIC DCH   K +S+   R IV+RD  R+H F +G+C+
Sbjct: 576 AIVFGTMH-AVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACS 634

Query: 571 CGDLW 575
           CGD W
Sbjct: 635 CGDYW 639



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 128/253 (50%), Gaps = 9/253 (3%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ-NSRLVDSLSVFADMRS 194
           F  ++L   Y++F   D+A ++FD +  R+VV +  ++   A  + R  ++L     MR 
Sbjct: 105 FVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRR 164

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V    Y  S  L A      +     +H   V +GLD +V V + LID Y K G +  
Sbjct: 165 DGVAPNAYTFSSVLGACTTPGMLT---AVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDG 221

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            RRVFDE ++  + + WN+++AG+AQ GD    +ELF  ++  GF+ ++ +  +VL A C
Sbjct: 222 GRRVFDEMVT-RDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRA-C 279

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
              +  E+ + +    ++Y  +  L  +  L+    + G LEDA+ +   MP + D   W
Sbjct: 280 TGMVMLEAGRQVHAHVLKYDRD--LILHNALLDMYCKCGSLEDADALFHRMP-QRDVISW 336

Query: 375 RALLSFSAIHGKA 387
             ++S  A +GK+
Sbjct: 337 STMVSGLAQNGKS 349



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 12/203 (5%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA  +K+   +D  + ++LI  Y K   L    R+F+ + + ++V W ++I+  + S  
Sbjct: 190 VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGD 249

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK----LSLHDKP 135
            +      +R     F  NQ TL S+ + C  +      G  +H+  LK    L LH+  
Sbjct: 250 GVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMV-MLEAGRQVHAHVLKYDRDLILHN-- 306

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
               AL+  Y +  S ++A  +F  + +RDV+ +  M+ G AQN + V++L VF  M+S 
Sbjct: 307 ----ALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQ 362

Query: 196 DVGSTMYCVSGALRAAAELAAME 218
            V      + G L A +    +E
Sbjct: 363 GVAPNHVTMVGVLFACSHAGLVE 385



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 12/188 (6%)

Query: 218 EQCRVIHGHAVVSGL-----DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           +  R+IH H    G         + V   L   Y K G++ DA R+FD  + V N + W 
Sbjct: 81  DHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFD-GMPVRNVVTWT 139

Query: 273 AMMAGYAQ-QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            ++A  A   G +   L     +   G AP+ Y+F +VL A    G+       +    V
Sbjct: 140 TVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGMLTA----VHASTV 195

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           +  L+  +   + LI A  + G L+   R+   M    D  VW ++++  A  G    A 
Sbjct: 196 KAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEM-VTRDLVVWNSIIAGFAQSGDGVGAI 254

Query: 392 KMGKRLID 399
           ++  R+ D
Sbjct: 255 ELFMRMKD 262


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 195/564 (34%), Positives = 327/564 (57%), Gaps = 16/564 (2%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           ++H  A+K   + D  + N LI  Y+K   L  +  +FN +   +IVSW +L++A   + 
Sbjct: 261 LIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNK 320

Query: 79  ---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS--LHD 133
              ++L ++  M    ++  +P+  TL SL    A L + FL   S+H    +    LHD
Sbjct: 321 KPVIALGVYNKM---HSIGVVPDLLTLVSLASVAAELGN-FLSSRSIHGFVTRRCWFLHD 376

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               G+A++  Y++    D+A+KVF+ +  +DV+ + ++I G++QN    +++ V++ MR
Sbjct: 377 IAL-GNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMR 435

Query: 194 --SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
             S  V +    VS  L A ++L A++Q    HG  + + L  ++ V T L+D YGK G 
Sbjct: 436 YYSGAVPNQGTWVS-ILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGK 494

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           ++DA  +F E +   +S++WNA+++ +   G     ++LF  ++  G  PD  +F+++L+
Sbjct: 495 LADALSLFYE-VPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLS 553

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  ++GL  E +   + M+  Y + P L+HY C++   GRAG LE A      MP  PD 
Sbjct: 554 ACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDV 613

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           +VW ALL    IH   ++   +   L+ +   +   YV+++N+ + +G W+ V EVR + 
Sbjct: 614 SVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLA 673

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           +DR ++K  G S IEV  K+ VF  G++ H + E+IY++L  L  + + +GYVP ++ +L
Sbjct: 674 RDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVL 733

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            +V D EK   L  HSE+LA+AFG++S  P+  TL+I KNLR+C DCH + K+IS++ ER
Sbjct: 734 QDVEDDEKENILTSHSERLAMAFGIISTPPK-TTLQIFKNLRVCGDCHNATKFISKITER 792

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD NR+H F +G C+CGD W
Sbjct: 793 EIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 210/430 (48%), Gaps = 26/430 (6%)

Query: 17  DPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA-- 73
           D R VH   LK   + D  I  + I  YS+   +S +  LF+++   +I +W A+IS   
Sbjct: 157 DGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFY 216

Query: 74  -HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            +     +L +F  M R  ++S   +  T++SL   C  L    + G+ +H  ++KL L 
Sbjct: 217 LNGKVAEALEVFDEM-RFKSVSM--DSVTISSLLPICVQLDD-IISGVLIHVYAIKLGLE 272

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F  +AL++ Y++F    +A+ +F++++ RD+V + +++  F QN + V +L V+  M
Sbjct: 273 FDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKM 332

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV-VSGLDRNVIVGTGLIDGYGKAGI 251
            S  V   +  +      AAEL      R IHG          ++ +G  +ID Y K G 
Sbjct: 333 HSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGF 392

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE-MRGFAPDEYSFLAVL 310
           +  AR+VF E L V + I+WN+++ GY+Q G  +  ++++  +    G  P++ +++++L
Sbjct: 393 IDSARKVF-EGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSIL 451

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHY-----TCLISAMGRAGRLEDAERIAMAM 365
           TA    G   +       MK   +L     ++     TCL+   G+ G+L DA  +   +
Sbjct: 452 TAHSQLGALKQG------MKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEV 505

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDE 423
           P +   + W A++S   +HG    A K+ K +    + P D   +V + +  S  G  DE
Sbjct: 506 PHQSSVS-WNAIISCHGLHGYGLKAVKLFKEMQSEGVKP-DHITFVSLLSACSHSGLVDE 563

Query: 424 VAEVRKVMKD 433
                ++M++
Sbjct: 564 GQWCFQLMQE 573



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 168/365 (46%), Gaps = 31/365 (8%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN------SPLSLNIFLSMLRHPT 92
           LI  Y+    + ++   F+ I + ++ +W ++ISA++       +    N FLS      
Sbjct: 81  LINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLST----- 135

Query: 93  LSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            SFL  +  T   + + C +L      G  +H L LKL      +  ++ +HFYSRF   
Sbjct: 136 -SFLQSDHYTFPPVIRACGNLDD----GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFV 190

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A  +FD +  RD+  + AMI GF  N ++ ++L VF +MR   V      +S  L   
Sbjct: 191 SLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPIC 250

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
            +L  +    +IH +A+  GL+ ++ V   LI+ Y K G +  A  +F++ + V + ++W
Sbjct: 251 VQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQ-MKVRDIVSW 309

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N+++A + Q       L +++ +   G  PD      +LT +  A +A E   ++    +
Sbjct: 310 NSLLAAFEQNKKPVIALGVYNKMHSIGVVPD------LLTLVSLASVAAELGNFLSSRSI 363

Query: 332 ------RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
                 R      +     +I    + G ++ A ++   +P + D   W +L++  + +G
Sbjct: 364 HGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVK-DVISWNSLITGYSQNG 422

Query: 386 KADMA 390
            A+ A
Sbjct: 423 LANEA 427



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 115/259 (44%), Gaps = 7/259 (2%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           LH+L +        F  + L++ Y+      +A+  FD+I+ +DV  + +MI  +A+   
Sbjct: 62  LHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGH 121

Query: 182 LVDSLSVFAD-MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              ++  F + + +S + S  Y     +RA   L   +  R +H   +  G + +V +  
Sbjct: 122 FHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNL---DDGRKVHCLVLKLGFECDVYIAA 178

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
             I  Y + G VS A  +FD N+ + +   WNAM++G+   G  +  LE+F  +  +  +
Sbjct: 179 SFIHFYSRFGFVSLACNLFD-NMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVS 237

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
            D  + ++ L  +C       S   I    ++  LE  L     LI+   + G L  AE 
Sbjct: 238 MDSVT-ISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAET 296

Query: 361 IAMAMPFEPDAAVWRALLS 379
           I   M    D   W +LL+
Sbjct: 297 IFNQMKVR-DIVSWNSLLA 314


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 189/573 (32%), Positives = 314/573 (54%), Gaps = 40/573 (6%)

Query: 12  QNTSTDPRIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           Q      R +HA  ++++     I    L+  YS+   L+Y+  +FN +   N  SW ++
Sbjct: 291 QRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSM 350

Query: 71  ISAHSN---SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
           I  +     +  +L +F  M  +      P+  +L+S+  +C SLS +   G  LH+  +
Sbjct: 351 IEGYQQNGETQEALRLFKQMQLN---GIKPDCFSLSSMLSSCVSLSDS-QKGRELHNFIV 406

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDS 185
           + ++ ++      LV  Y++  S D A KV+D+   ++R+   + +++ G+A      +S
Sbjct: 407 RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKES 466

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
            + F +M  SD+               E   +    +++           +++ T L+D 
Sbjct: 467 FNHFLEMLESDI---------------EYDVLTMVTIVNL----------LVLETALVDM 501

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K G ++ AR VFD N++  N ++WNAM++GY++ G     L L+  +  +G  P+E +
Sbjct: 502 YSKCGAITKARTVFD-NMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVT 560

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           FLA+L+A  + GL  E  +    M+  Y +E   EHYTC++  +GRAGRLEDA+     M
Sbjct: 561 FLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKM 620

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           P EP+ + W ALL    +H   DM     +RL +++P +   YVI++N+ +  GRW EV 
Sbjct: 621 PIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVE 680

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           ++R++MK + V+K+ G SWIE+  ++ +F AG + H +TE+IY  L  L  + + LGY+P
Sbjct: 681 DIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIP 740

Query: 486 VWDEMLHNVGDREKREALWY---HSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
               +L NV D ++ E   Y   HSE+LAL+ GL+S  P+  T+R+ KNLRIC DCH + 
Sbjct: 741 DTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLIS-LPKKSTIRVFKNLRICGDCHTAT 799

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           K+IS++  R I+ RD NR+H F NG C+CGD W
Sbjct: 800 KFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 109/464 (23%), Positives = 200/464 (43%), Gaps = 48/464 (10%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPT-LSFLP----NQRTLASLFKT 108
           R F  +P+PN  S++A    H+ + + L         PT +   P    N    +SL + 
Sbjct: 22  RHFFLLPNPNSKSFSAHF-GHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPYSSLIQD 80

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN---AKKVFDEIRERD 165
           C   S++F  G S+H+  +    +   +  + ++  Y+R    D+   A+K+F+E+ ER+
Sbjct: 81  CID-SNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERN 139

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           +  +  MI+ +A+    +++  +F  M    V    +  + ALR    L + +  + +H 
Sbjct: 140 LTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHS 199

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
             +  G   +  VG  LID Y K        +VFDE +   N + WN++++  AQ G  +
Sbjct: 200 KLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE-MGERNQVTWNSIISAEAQFGHFN 258

Query: 286 TVLELFHLLEMR----GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
             L LF  L M+    G  PD+++F  +LT LC         + I    +R  +   +  
Sbjct: 259 DALVLF--LRMQESEDGIQPDQFTFTTLLT-LCANQRNDNQGRQIHAHLIRANITKNIIV 315

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
            T L+      GRL  A+ I   M  E +A  W +++     +G+   A ++ K++  +N
Sbjct: 316 ETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEGYQQNGETQEALRLFKQM-QLN 373

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMH 461
                 + + + + S V   D         K R +     R+ +E +G + V L      
Sbjct: 374 GIKPDCFSLSSMLSSCVSLSDS-------QKGRELHNFIVRNTMEEEGILQVVLV----- 421

Query: 462 ERTEDIYTKLAELMEECERLGYV-PVWDEMLHNVGDREKREALW 504
               D+Y K       C  + Y   V+D+ +     +++  ALW
Sbjct: 422 ----DMYAK-------CGSMDYAWKVYDQTI----KKDRNTALW 450


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 312/559 (55%), Gaps = 5/559 (0%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH+  +    ++D  + N+L+  Y+K   +  +  +F+ +   ++ SW  +IS ++ +
Sbjct: 181 RRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKN 240

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD-KPF 136
             S   FL            +  TL  L   CA L  A   G  +H  +++ S+ +   F
Sbjct: 241 ADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLK-AVKEGKVIHGYAVRNSIGNYNKF 299

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  Y       +A+++F+ +R +D V + +MI+G+A+N    +SL +F  M    
Sbjct: 300 FTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDG 359

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
            G         L A  ++AA+     IH + V  G D N IVGT L+D Y K G ++ +R
Sbjct: 360 SGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSR 419

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RVFDE +   + ++W+AM+AGY   G     + +   ++     PD   F ++L+A  +A
Sbjct: 420 RVFDE-MPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHA 478

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E ++   +M+  Y ++P L HY+C++  +GRAG L++A  I   M  +P + +W A
Sbjct: 479 GLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAA 538

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+ S +H    +A    +++ D+NP   S+Y+ ++N+ +   RWD+V  VR +++ + +
Sbjct: 539 LLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGL 598

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S+IE+   VH FL GD+ H++TEDIY KL EL ++ +  GY P    + ++V +
Sbjct: 599 KKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEE 658

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K + LW HSE+LA+AF L++  P G  +RI KNLR+C DCH   K IS +  REI++R
Sbjct: 659 EVKEKMLWDHSERLAIAFALINTGP-GTVIRITKNLRVCGDCHTVTKLISELTGREIIMR 717

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D++R+H F+ G C+CGD W
Sbjct: 718 DIHRFHHFIKGFCSCGDYW 736



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 197/423 (46%), Gaps = 11/423 (2%)

Query: 21  VHARALKSSQADRSIYNN--LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +HA  +  S  + + Y N  L   Y+   L+S +  +F+ I   N   W  +I  ++++ 
Sbjct: 81  LHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNG 140

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
           L +   +            +  T   + K C  L    + G  +HS  +   L    + G
Sbjct: 141 LPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEI-GRRVHSEVVVCGLESDIYVG 199

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           ++L+  Y++F     A+ VFD + ERD+  +  MI G+A+N+    +  VF  M  + + 
Sbjct: 200 NSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLF 259

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL-DRNVIVGTGLIDGYGKAGIVSDARR 257
           +    + G L A A+L A+++ +VIHG+AV + + + N      LI+ Y     + DARR
Sbjct: 260 ADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARR 319

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F E +   ++++WN+M+ GYA+ GD    L LF  + + G  PD+ +F+AVL A C+  
Sbjct: 320 LF-ERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGA-CDQI 377

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
            A      I    V+   +      T L+    + G L  + R+   MP +     W A+
Sbjct: 378 AALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMP-DKSLVSWSAM 436

Query: 378 LSFSAIHGKADMASKM--GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV-RKVMKDR 434
           ++   +HG+   A  +  G +   + P D+  +  + +  S  G   E  E+  K+ K+ 
Sbjct: 437 VAGYGLHGRGREAISILDGMKANSVIP-DNGVFTSILSACSHAGLVVEGKEIFYKMEKEY 495

Query: 435 RVR 437
            V+
Sbjct: 496 NVK 498


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 203/568 (35%), Positives = 305/568 (53%), Gaps = 17/568 (2%)

Query: 21  VHARALKSSQADRS---IYNNLIT--NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           +HAR LKS   D +    ++ L T    S S  L+Y+  +   + +PN   +  +I A+S
Sbjct: 12  LHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSFYYNTMIRAYS 71

Query: 76  NSP---LSLNIFLSMLRHPTLSFL---PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
           +S     +  +FL M      S     P+  T   + K C+   HA  FG  +H L  K 
Sbjct: 72  DSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHA-RFGKQIHGLVFKS 130

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
            +    +  +AL+H YS    P+ A KVFD++ +RDVV + ++I GF  N R ++++ +F
Sbjct: 131 GVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLF 190

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
             M  + +      V+  LRA A+  A+     IH          N  V T LID Y K 
Sbjct: 191 THMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKC 250

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  A  VFDE L   +   W A++AG A  G     +E F  ++      DE +  AV
Sbjct: 251 GCIDGALEVFDETLEK-DVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAV 309

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L+A  NAGL  E   +  R+K ++K++P ++HY C++  + RAGRL+DAE     MP EP
Sbjct: 310 LSAYRNAGLVSEGLLFFRRLK-KHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEP 368

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           DA +WR L+    I G  + + ++ + L  ++++  D  +YV++ NV +  G+W+E A+ 
Sbjct: 369 DAVLWRTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKT 428

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           R++M  R + K    S IE+ G VH F AGD  H+    +Y KL ++ E     GY P+ 
Sbjct: 429 RELMYQRGLMKPPACSRIEIDGVVHEFTAGDSRHDEATAVYEKLEDVEERLRGEGYNPIV 488

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
            E+L  + D EK   L +HSEKLA++FGLV  +P G  +RIVKNLR C DCH   K IS+
Sbjct: 489 SEVLLEIDDDEKASQLLHHSEKLAVSFGLVKSSP-GSVIRIVKNLRSCEDCHSFMKLISK 547

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           V +R+I+VRD  R+H F  G+C+CGD W
Sbjct: 548 VYQRDIIVRDRIRFHHFSGGNCSCGDRW 575


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 212/612 (34%), Positives = 312/612 (50%), Gaps = 44/612 (7%)

Query: 2   ALDLNQQPQPQNTSTDPR--IVHARALKSSQADRSIYNNLITNY---------------S 44
           AL  N   +P+NT    R  I   +  K +     IY  +I N+               S
Sbjct: 16  ALPPNSGTKPKNTPNRRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCS 75

Query: 45  KSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRT 101
             N + Y+ ++F+H  +PN+  +TALI     S      ++++  M+     S +P+   
Sbjct: 76  NLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINS---SLVPDSYA 132

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           + S+ K C     A   G  +HS  LKL L         L+  Y +  + ++A++VFDE+
Sbjct: 133 VTSVLKACGC-HLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEM 191

Query: 162 RERDVV------------------CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            ERDVV                  C+ AMI G  +N     +L VF +M+  DV      
Sbjct: 192 PERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVT 251

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           +   L A +EL A++  R +  +     ++ N  VG  LI+ Y + G + +A+RVF E +
Sbjct: 252 IVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVF-EQM 310

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              N I +N+M+ G+A  G     +ELF  L  +GF P   +F+ VL A  + GLA    
Sbjct: 311 KEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGF 370

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           +    M   Y +EP +EHY C++  +GR GRLE+A      M   PD  +  ALLS   I
Sbjct: 371 EIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKI 430

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           HG  ++A ++ K L+     D   Y++++N  S  G+W E AEVR  M++  + KE G S
Sbjct: 431 HGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCS 490

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
            IEV  ++H FL GD  H + E IY KL EL +     GY P  + +LH++   EK  AL
Sbjct: 491 SIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWAL 550

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
             HSE+LA+ +GL+S  P   TLR+VKNLR+C DCH + K IS +  R+IVVRD NR+H 
Sbjct: 551 AIHSERLAICYGLISTKPL-TTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHH 609

Query: 564 FLNGSCTCGDLW 575
           F NG C+CGD W
Sbjct: 610 FENGVCSCGDYW 621


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 186/558 (33%), Positives = 313/558 (56%), Gaps = 5/558 (0%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA  + + +  D  I N L+  Y++   +  +  LF+ +   +  +W+ ++   + +
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                 + +          P+  TL  + +TC   +     G  +H + LK  L    F 
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTD-LQIGRVIHDVVLKHGLLSDHFV 138

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++LV  Y++    ++A+++F+ +  +D+V +  MI  +A +    +SL +F  MR   V
Sbjct: 139 CASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEGV 197

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 +   + A A+L AM + R  + + V +G   +VI+GT +ID Y K G V  AR 
Sbjct: 198 VPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESARE 257

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VFD  +   N I+W+AM+A Y   G     ++LFH++      P+  +F+++L A  +AG
Sbjct: 258 VFDR-MKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAG 316

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E  ++   M   + + P ++HYTC++  +GRAGRL++A R+  AM  E D  +W AL
Sbjct: 317 LIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSAL 376

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    IH K ++A K    L+++ P +   YV+++N+ +  G+W++VA+ R +M  R+++
Sbjct: 377 LGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLK 436

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K  G +WIEV  K + F  GDR H ++++IY  L  L+++ E  GYVP  D +L +V + 
Sbjct: 437 KIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEE 496

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            K+E L+ HSEKLA+AFGL++  P G+ +RI KNLR+C DCH   K +S ++ R I+VRD
Sbjct: 497 VKQEMLYTHSEKLAIAFGLIA-IPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRD 555

Query: 558 VNRYHRFLNGSCTCGDLW 575
            NR+H F +G+C+CGD W
Sbjct: 556 ANRFHHFNDGTCSCGDYW 573


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 312/572 (54%), Gaps = 24/572 (4%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
           VH  A+K  +++  S+ N+L + Y+K   L  +LR F  IP  N+++WT +ISA +    
Sbjct: 161 VHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEE 220

Query: 79  ---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              L +++F+ ML       +PN+ TL S+   C +     L G  + + S K+      
Sbjct: 221 CVELGMSLFIDMLMD---GVMPNEFTLTSVMSLCGTRLDLNL-GKQVQAFSFKIGCETNL 276

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ-----------NSRLVD 184
              ++ ++ Y R    D A ++F+++ +  ++ + AMI G+AQ            SR   
Sbjct: 277 PVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQ 336

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L++F D++ S +   ++  S  L   + + A+EQ   IH   + SG   +V+V + L++
Sbjct: 337 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVN 396

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G + DA + F E +     + W +M++GY+Q G     ++LF  + + G  P+E 
Sbjct: 397 MYNKCGCIQDANKAFLE-MPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEI 455

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F+++L+A   AGL  E+E + + MK  Y +EP ++HY C+I    R GR+EDA      
Sbjct: 456 TFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKR 515

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
             FEP+ A+W +L++    HG  ++A     +L+++ P     Y+++ N+     RW +V
Sbjct: 516 TGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDV 575

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
           A VRK+MK   V     RSWI +K KV+ F A DR H +  ++Y  L  L+E+ + +GY 
Sbjct: 576 ARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYE 635

Query: 485 PVWDEMLHNVGDREKREA--LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           P  +  L +  D EK  A  L +HSE+LA+A GL+   P G T+R+ KN+ +CRDCH S 
Sbjct: 636 PYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQ-TPPGATVRVTKNITMCRDCHSSI 694

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           K  S +  REI+VRD  R H+F +G C+CGD 
Sbjct: 695 KLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 726



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 182/396 (45%), Gaps = 25/396 (6%)

Query: 54  RLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           RLF+ +P  N+V+WTAL++ +   S   L L +F+ ML    +   P+  TL +    C 
Sbjct: 94  RLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLE---MGRYPSHYTLGATLNACL 150

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
           +     L G  +H  ++K         G++L   Y++  S D+A + F  I E++V+ + 
Sbjct: 151 ASCDVDL-GKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWT 209

Query: 171 AMIVGFAQNSRLVD-SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
            MI   A++   V+  +S+F DM    V    + ++  +        +   + +   +  
Sbjct: 210 TMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFK 269

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS---- 285
            G + N+ V    +  Y + G   +A R+F E +   + I WNAM++GYAQ  D +    
Sbjct: 270 IGCETNLPVKNSTMYLYLRKGETDEAMRLF-EQMEDASIITWNAMISGYAQIMDSAKDDL 328

Query: 286 -------TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
                    L +F  L+     PD ++F ++L+ +C+A +A E  + I    ++      
Sbjct: 329 QARSRGFQALTIFRDLKRSVMKPDLFTFSSILS-VCSAMMALEQGEQIHAQTIKSGFLSD 387

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--R 396
           +   + L++   + G ++DA +  + MP       W +++S  + HG+   A ++ +  R
Sbjct: 388 VVVNSALVNMYNKCGCIQDANKAFLEMPTRT-FVTWTSMISGYSQHGQPQEAIQLFEEMR 446

Query: 397 LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           L  + P ++  +V + +  S  G  +E      +MK
Sbjct: 447 LAGVRP-NEITFVSLLSACSYAGLVEEAEHYFDMMK 481



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 12/236 (5%)

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           R+  +A+++FD + ER+VV + A++ G+  NS+    L VF +M       + Y +   L
Sbjct: 87  RAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATL 146

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A      ++  + +HG+A+  G +    +G  L   Y K G +  A R F   +   N 
Sbjct: 147 NACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAF-WRIPEKNV 205

Query: 269 IAWNAMMAGYAQQGDQSTV---LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
           I W  M++  A+  D+  V   + LF  + M G  P+E++  +V++ LC   L     K 
Sbjct: 206 ITWTTMISACAE--DEECVELGMSLFIDMLMDGVMPNEFTLTSVMS-LCGTRLDLNLGKQ 262

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV--WRALLS 379
           ++    +   E  L      +    R G  ++A R+   M    DA++  W A++S
Sbjct: 263 VQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQM---EDASIITWNAMIS 315


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 309/560 (55%), Gaps = 9/560 (1%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           VH   +KS   D +I+  N+++  YSKS ++S +  +F+ + + N VSW ++I+    + 
Sbjct: 215 VHTMVIKSG-LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG 273

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
           L L  F    R         Q   A++ K CA++     F   LH   +K          
Sbjct: 274 LDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKE-MSFAKQLHCQVIKNGSDFDLNIK 332

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD- 196
           +AL+  YS+    D+A K+F  +   ++VV + A+I G+ QN R   ++++F  MR  + 
Sbjct: 333 TALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEG 392

Query: 197 VGSTMYCVSGALRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           V    +  S  L A AA  A++EQ +  H  ++ SG    + V + L+  Y K G +  A
Sbjct: 393 VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESA 452

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             VF   +   + ++WN+M++GYAQ G     L++F  +  +    D  +F+ V++A  +
Sbjct: 453 NEVFKRQVD-RDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTH 511

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  E +++ + M   Y + P +EHY+C++    RAG LE A  +   MPF   A +WR
Sbjct: 512 AGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWR 571

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
            LL+   +H    +     ++LI + P D +AYV+++N+ +  G W E A+VRK+M  ++
Sbjct: 572 TLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKK 631

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           V+KE G SWIEVK K   F+AGD  H +++ IY KL EL    +  GY P    +LH+V 
Sbjct: 632 VKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVE 691

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           +  K   L  HSE+LA+AFGL++  P G  ++IVKNLR+C DCH   K IS++  R+IVV
Sbjct: 692 EEHKEVILSQHSERLAIAFGLIA-TPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVV 750

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H F  GSC+CGD W
Sbjct: 751 RDSNRFHHFKGGSCSCGDYW 770



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 173/370 (46%), Gaps = 10/370 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH + +K     D S+  +L+  Y K+  +    R+F+ +   N+VSWT+L++ +  + L
Sbjct: 114 VHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGL 173

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F  M         PN  T A++    A+   A   G+ +H++ +K  L    F
Sbjct: 174 NEQALKLFSQMQLE---GIKPNPFTFAAVLGGLAA-DGAVEKGVQVHTMVIKSGLDSTIF 229

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+++V+ YS+     +AK VFD +  R+ V + +MI GF  N   +++  +F  MR   
Sbjct: 230 VGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG 289

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V  T    +  ++  A +  M   + +H   + +G D ++ + T L+  Y K   + DA 
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCN 315
           ++F     V N ++W A+++GY Q G     + LF  +    G  P+E++F +VL A   
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAA 409

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
              + E  K      ++      L   + L++   + G +E A  +      + D   W 
Sbjct: 410 PTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEV-FKRQVDRDLVSWN 468

Query: 376 ALLSFSAIHG 385
           +++S  A HG
Sbjct: 469 SMISGYAQHG 478



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 166/345 (48%), Gaps = 13/345 (3%)

Query: 51  YSLRLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRH--PTLSFLPNQRTLASL 105
           +S +LF+  P   +     L+   S +  +  +LN+FL + R   PT     +  +L+ +
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPT-----DGSSLSCV 98

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K C  L    + G  +H   +K    +    G++LV  Y +  S ++ ++VFDE+R ++
Sbjct: 99  LKVCGCLFDR-IVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN 157

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           VV + +++ G+ QN     +L +F+ M+   +    +  +  L   A   A+E+   +H 
Sbjct: 158 VVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT 217

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
             + SGLD  + VG  +++ Y K+ +VSDA+ VFD ++   N+++WN+M+AG+   G   
Sbjct: 218 MVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFD-SMENRNAVSWNSMIAGFVTNGLDL 276

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
              ELF+ + + G    +  F A +  LC         K +    ++   +  L   T L
Sbjct: 277 EAFELFYRMRLEGVKLTQTIF-ATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTAL 335

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           + A  +   ++DA ++   M    +   W A++S    +G+ D A
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRA 380


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 190/572 (33%), Positives = 312/572 (54%), Gaps = 24/572 (4%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
           VH  A+K  +++  S+ N+L + Y+K   L  +LR F  IP  N+++WT +ISA +    
Sbjct: 201 VHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEE 260

Query: 79  ---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              L L++F+ ML       +PN+ TL S+   C +     L G  + + S K+      
Sbjct: 261 CVELGLSLFIDMLMD---GVMPNEFTLTSVMSLCGTRLDLNL-GKQVQAFSFKIGCETNL 316

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ-----------NSRLVD 184
              ++ ++ Y R    D A ++F+++ +  ++ + AMI G+AQ            SR   
Sbjct: 317 PVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQ 376

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L++F D++ S +   ++  S  L   + + A+EQ   IH   + SG   +V+V + L++
Sbjct: 377 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVN 436

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G + DA + F E +     + W +M++GY+Q G     ++LF  + + G  P+E 
Sbjct: 437 MYNKCGCIQDANKAFLE-MPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEI 495

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F+++L+A   AGL  E+E + + MK  Y +EP ++HY C+I    R GR+EDA      
Sbjct: 496 TFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKR 555

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
             FEP+ A+W +L++    HG  ++A     +L+++ P     Y+++ N+     RW +V
Sbjct: 556 TGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDV 615

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
           A VRK+MK   V     RSWI +K KV+ F A DR H +  ++Y  L  L+E+ + +GY 
Sbjct: 616 ARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYE 675

Query: 485 PVWDEMLHNVGDREKREA--LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           P  +  L +  D EK  A  L +HSE+LA+A GL+   P G T+R+ KN+ +CRDCH S 
Sbjct: 676 PYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQ-TPPGATVRVTKNITMCRDCHSSI 734

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           K  S +  REI+VRD  R H+F +G C+CGD 
Sbjct: 735 KLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 197/432 (45%), Gaps = 26/432 (6%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           R VH    K+ + AD  +  +L+  Y +      + RLF+ +P  N+V+WTAL++ +   
Sbjct: 98  RAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLN 157

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           S   L L +F+ ML    +   P+  TL +    C +     L G  +H  ++K      
Sbjct: 158 SQPALGLEVFVEMLE---MGRYPSHYTLGATLNACLASCDVDL-GKQVHGYAIKYGAESI 213

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMR 193
              G++L   Y++  S D+A + F  I E++V+ +  MI   A++   V+  LS+F DM 
Sbjct: 214 TSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDML 273

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              V    + ++  +        +   + +   +   G + N+ V    +  Y + G   
Sbjct: 274 MDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETD 333

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQS-----------TVLELFHLLEMRGFAPD 302
           +A R+F E +   + I WNAM++GYAQ  D +             L +F  L+     PD
Sbjct: 334 EAMRLF-EQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPD 392

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
            ++F ++L+ +C+A +A E  + I    ++      +   + L++   + G ++DA +  
Sbjct: 393 LFTFSSILS-VCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYVIVANVLSGVGR 420
           + MP       W +++S  + HG+   A ++ +  RL  + P ++  +V + +  S  G 
Sbjct: 452 LEMPTRT-FVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRP-NEITFVSLLSACSYAGL 509

Query: 421 WDEVAEVRKVMK 432
            +E      +MK
Sbjct: 510 VEEAEHYFDMMK 521



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 7/187 (3%)

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V S MY     L    E+ ++   R +HGH   +G   ++ V T L++ Y + G   DAR
Sbjct: 76  VQSAMYV--PLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDAR 133

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCN 315
           R+FD  +   N + W A++ GY      +  LE+F  +LEM G  P  Y+  A L A C 
Sbjct: 134 RLFD-GMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEM-GRYPSHYTLGATLNA-CL 190

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           A    +  K +    ++Y  E        L S   + G L+ A R    +P E +   W 
Sbjct: 191 ASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIP-EKNVITWT 249

Query: 376 ALLSFSA 382
            ++S  A
Sbjct: 250 TMISACA 256


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 188/529 (35%), Positives = 304/529 (57%), Gaps = 12/529 (2%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           + F+ IPSPN V  TA+ S +  + L   SL +F  ++   + + +     L + F   A
Sbjct: 146 KAFDEIPSPNPVIITAMASGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVA-FSASA 204

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF--RSPDNAKKVFDEIRERDVVC 168
            +    +   SLH+L +K  L       + ++  Y++   R    A+KVFD + E+DVV 
Sbjct: 205 RIPDCGITS-SLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVS 262

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMR--SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
           + +MI  +AQN    D+L ++  M   S  +      +S  L A A    ++  + IH  
Sbjct: 263 WNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQ 322

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
            V  GL+ NV VGT ++D Y K G V  AR+ F + +   N ++W+AM+ GY   G    
Sbjct: 323 VVRMGLEENVYVGTSVVDMYSKCGRVEMARKAF-QKIKEKNILSWSAMITGYGMHGHGQE 381

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            L++F+ +   G  P+  +F++VL A  +AGL  +   W   MK R+ +EPG+EHY C++
Sbjct: 382 ALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMV 441

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
             +GRAG L++A  +   M  +PDAA+W ALLS   IH   ++A    KRL +++  +  
Sbjct: 442 DLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATNCG 501

Query: 407 AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
            YV+++N+ +  G W +V  +R ++K R + K  G S +E+KG+ H+F  GD+ H + ++
Sbjct: 502 YYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKE 561

Query: 467 IYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTL 526
           IY+ L +L+E+ +  GYVP    +LH++ + EK  AL  HSEKLA+AF L++  P G  +
Sbjct: 562 IYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMNSVP-GSVI 620

Query: 527 RIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            ++KNLR+C DCH + K I+++ +REI+VRD+ R+H F +GSC+CGD W
Sbjct: 621 HVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 199/579 (34%), Positives = 312/579 (53%), Gaps = 14/579 (2%)

Query: 6   NQQPQPQNTSTDPRIVHA-----RALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHI 59
            Q    Q TS     + A     R  KS   D  +    L+  Y+K   L Y+ R+F+ +
Sbjct: 125 QQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 184

Query: 60  PSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
           P+ N V+W+ALI      S    +  +F +ML    L FL +  ++AS  + CASL H  
Sbjct: 185 PARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ-GLCFL-SPTSIASALRACASLDH-L 241

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
             G  LH+L  K  +H     G++L+  Y++    D A  +FDE+  +D V Y A++ G+
Sbjct: 242 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
            QN R  ++  VF  M++ +V      +   + A + LAA++  R  HG  ++ GL    
Sbjct: 302 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 361

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            +   LID Y K G +  +R+VF+  +   + ++WN M+AGY   G       LF  +  
Sbjct: 362 SICNALIDMYAKCGRIDLSRQVFNM-MPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 420

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            GF PD  +F+ +L+A  ++GL  E + W   M   Y L P +EHY C++  + R G L+
Sbjct: 421 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 480

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A     +MP   D  VW ALL    ++   D+  K+ + + ++ P     +V+++N+ S
Sbjct: 481 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 540

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
             GR+DE AEVR + K +  +K  G SWIE+ G +H F+ GD+ H ++ +IY +L  ++ 
Sbjct: 541 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILV 600

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
             ++LGY P    +L ++ + EK +AL  HSEKLA+A+G++S     KT+ + KNLR+C 
Sbjct: 601 GIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILS-LSEDKTIFVTKNLRVCG 659

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH   K+IS V  R I+VRD NR+H F NG C+CGD W
Sbjct: 660 DCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 193/423 (45%), Gaps = 33/423 (7%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H  A+ +  QAD  +   L+  Y K   L  +  +F  +P+ ++V+W A+++ +++ 
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 89

Query: 78  P---------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
                     LS+ + +  LR       PN  TL +L    A    A   G S+H+  ++
Sbjct: 90  GMYHHAVAHLLSMQMQMHRLR-------PNASTLVALLPLLAQQG-ALAQGTSVHAYCIR 141

Query: 129 LSLH----------DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
             LH          D    G+AL+  Y++  S   A++VFD +  R+ V + A+I GF  
Sbjct: 142 ACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVL 201

Query: 179 NSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
            SR+  +  +F  M +  +   +   ++ ALRA A L  +     +H     SG+  ++ 
Sbjct: 202 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 261

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
            G  L+  Y KAG++  A  +FDE ++V ++++++A+++GY Q G       +F  ++  
Sbjct: 262 AGNSLLSMYAKAGLIDQAIALFDE-MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC 320

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
              PD  + ++++ A C+   A +  +      +   L         LI    + GR++ 
Sbjct: 321 NVEPDAATMVSLIPA-CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDL 379

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLS 416
           + ++   MP   D   W  +++   IHG    A+ +   + ++  P D   ++ + +  S
Sbjct: 380 SRQVFNMMP-SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 438

Query: 417 GVG 419
             G
Sbjct: 439 HSG 441



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 148/343 (43%), Gaps = 32/343 (9%)

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           MLRH      PN  T     K C++L+     G ++H  ++   L    F  +AL+  Y 
Sbjct: 1   MLRH---RVAPNNYTFPFALKACSALADHHC-GRAIHRHAIHAGLQADLFVSTALLDMYV 56

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-----RSSDVGSTM 201
           +     +A  +F  +  RD+V + AM+ G+A +     +++    M     R     ST+
Sbjct: 57  KCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTL 116

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN----------VIVGTGLIDGYGKAGI 251
             +   L   A+  A+ Q   +H + + + L  N          V++GT L+D Y K G 
Sbjct: 117 VAL---LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGS 173

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG---FAPDEY-SFL 307
           +  ARRVFD  +   N + W+A++ G+      +    LF  +  +G    +P    S L
Sbjct: 174 LLYARRVFDA-MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASAL 232

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
               +L +  +  +    + +  V   L  G      L+S   +AG ++ A  +   M  
Sbjct: 233 RACASLDHLRMGEQLHALLAKSGVHADLTAG----NSLLSMYAKAGLIDQAIALFDEMAV 288

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           + D   + AL+S    +G+A+ A  + K++   N   D+A ++
Sbjct: 289 K-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 330


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 198/565 (35%), Positives = 314/565 (55%), Gaps = 12/565 (2%)

Query: 17  DPRIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D + VHA  +K+     + +   L+  Y K + L  + ++ + +P  N+VSWTA+IS +S
Sbjct: 70  DGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYS 129

Query: 76  ---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
              +S  +L +F  M+R       PN+ T A++  +C   S     G  +H L +K +  
Sbjct: 130 QTGHSSEALTVFAEMMRSDGK---PNEFTFATVLTSCIRAS-GLGLGKQIHGLIVKWNYD 185

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F GS+L+  Y++      A+++F+ + ERDVV   A+I G+AQ     ++L +F  +
Sbjct: 186 SHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL 245

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            S  +       +  L A + LA ++  +  H H +   L    ++   LID Y K G +
Sbjct: 246 HSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNL 305

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLT 311
           S ARR+FD N+    +I+WNAM+ GY++ G    VLELF L+ + +   PD  + LAVL+
Sbjct: 306 SYARRLFD-NMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLS 364

Query: 312 ALCNAGLAGESEKWIERMKV-RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
              +  +        + M    Y  +PG EHY C++  +GRAGR+++A      MP +P 
Sbjct: 365 GCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPT 424

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A V  +LL    +H   D+   +G+RLI+I P +   YVI++N+ +  GRW +V  VR +
Sbjct: 425 AGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAM 484

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           M  + V KE GRSWI+ +  +H F A DR H R E++  K+ E+  + ++ GYVP    +
Sbjct: 485 MMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCV 544

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L++V + +K + L  HSEKLAL FGL++    G  +R+ KNLRIC DCH   K  S+V E
Sbjct: 545 LYDVDEEQKEKMLLGHSEKLALTFGLIATG-EGIPIRVFKNLRICVDCHNFAKIFSKVFE 603

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           RE+ +RD NR+H+ ++G C+CGD W
Sbjct: 604 REVSLRDKNRFHQIVDGICSCGDYW 628



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 6/225 (2%)

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           I     N RL ++L   A M   ++G   Y     L A  +  A+   + +H H + +  
Sbjct: 27  ISQLCSNGRLQEALLEMA-MLGPEMGFHGY--DALLNACLDKRALRDGQRVHAHMIKTRY 83

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
                + T L+  YGK   + DAR+V DE +   N ++W AM++ Y+Q G  S  L +F 
Sbjct: 84  LPATYLRTRLLIFYGKCDCLEDARKVLDE-MPEKNVVSWTAMISRYSQTGHSSEALTVFA 142

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
            +      P+E++F  VLT+   A   G   K I  + V++  +  +   + L+    +A
Sbjct: 143 EMMRSDGKPNEFTFATVLTSCIRASGLGLG-KQIHGLIVKWNYDSHIFVGSSLLDMYAKA 201

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           G++++A  I   +P E D     A+++  A  G  + A +M  RL
Sbjct: 202 GQIKEAREIFECLP-ERDVVSCTAIIAGYAQLGLDEEALEMFHRL 245


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 207/627 (33%), Positives = 329/627 (52%), Gaps = 81/627 (12%)

Query: 22  HARALKSSQ-ADRSIYNNLITNY---SKSNLLSY--SLRLFNHIPSPNIVSWTALISA-- 73
           HA  L++    D  I  +L+ +Y   S +  LS+  SLR+F+ +  PN+  W  +I    
Sbjct: 54  HALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCI 113

Query: 74  HSNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS--------HAFL----FGL 120
            +N P  ++ ++  M+      F PN+ T  ++ K C+           HA L     G 
Sbjct: 114 ENNEPFKAILLYYEMM---VAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 170

Query: 121 SLHSLSLKLSLH--------------DK-----PFCGSALVHFYSRFRS----------- 150
             H LS  + ++              DK       C +A++  Y RF             
Sbjct: 171 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 230

Query: 151 PDN---------------------AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
           PD                      A++ FDE++ERD + + AMI G+ Q    +++L +F
Sbjct: 231 PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIF 290

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
             M+   +    + +   L A A L A++Q R IH +A  + +  + ++GT L+D Y K 
Sbjct: 291 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 350

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  A  VF E +S     +WNAM+ G A  G     ++LF  +++    P+E +F+ V
Sbjct: 351 GRIDLAWEVF-EKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN---PNEITFVGV 406

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  + GL  +       M+  Y +EP +EHY C++  +GRAG L +AE++  ++P EP
Sbjct: 407 LNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEP 466

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
             AVW ALL     HG  ++  ++GK L+++ P +   Y +++N+ +  GRW+EV EVRK
Sbjct: 467 TPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRK 526

Query: 430 VMKDRRVRKEGGRSWIEV-KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
           +MK+R ++   G S I++ +G+VH F+ GD  H + +DIY  L ++ E  +  GY P   
Sbjct: 527 LMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPS 586

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
           ++L ++ + EK  A+W HSEKLA+ FGL++ +P G T+RIVKNLR+C DCH + K IS+V
Sbjct: 587 QVLFDIDEEEKETAVWQHSEKLAIGFGLINTSP-GTTIRIVKNLRVCEDCHSATKLISQV 645

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
             REI+VRD  RYH F NG+C+C D W
Sbjct: 646 YNREIIVRDRIRYHHFRNGACSCKDFW 672


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 195/550 (35%), Positives = 301/550 (54%), Gaps = 16/550 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA---HSNSPLSLNIFLSM 87
           D++I   L+  YSK   +  +LRLF       N+VSWTA+IS    +     ++ +F  M
Sbjct: 333 DQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEM 392

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
            R       PN+ T + +      +S +      +H+  +K +       G+AL+  Y +
Sbjct: 393 KRK---GVRPNEFTYSVILTALPVISPS-----EVHAQVVKTNYERSSTVGTALLDAYVK 444

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
               D A KVF  I  +D+V + AM+ G+AQ      ++ +F+++    V    +  S  
Sbjct: 445 LGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSI 504

Query: 208 LRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           L   AA  A+M Q +  HG A+ S LD ++ V + L+  Y K G +  A  VF       
Sbjct: 505 LNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREK- 563

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + ++WN+M++GYAQ G     L++F  ++ R    D  +F+ V  A  +AGL  E EK+ 
Sbjct: 564 DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYF 623

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           + M    K+ P  EH +C++    RAG+LE A ++   MP    + +WR +L+   +H K
Sbjct: 624 DIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKK 683

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++     +++I + P D +AYV+++N+ +  G W E A+VRK+M +R V+KE G SWIE
Sbjct: 684 TELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIE 743

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           VK K + FLAGDR H   + IY KL +L    + LGY P    +L ++ D  K   L  H
Sbjct: 744 VKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQH 803

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF-L 565
           SE+LA+AFGL++  P+G  L I+KNLR+C DCH   K I+++ EREIVVRD NR+H F  
Sbjct: 804 SERLAIAFGLIA-TPKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSS 862

Query: 566 NGSCTCGDLW 575
           +G C+CGD W
Sbjct: 863 DGVCSCGDFW 872



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 179/380 (47%), Gaps = 8/380 (2%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H + +K    D  S+  +L+  Y K +       +F+ +   N+V+WT LIS ++ +
Sbjct: 117 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARN 176

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L+  +    +R       PN  T A+     A        GL +H++ +K  L      
Sbjct: 177 SLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGR-GLQVHTVVVKNGLDKTIPV 235

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L++ Y +  +   A+ +FD+   + VV + +MI G+A N   +++L +F  MR + V
Sbjct: 236 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHV 295

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             +    +  ++  A L  +     +H   V  G   +  + T L+  Y K   + DA R
Sbjct: 296 RLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALR 355

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F E   + N ++W AM++G+ Q   +   + LF  ++ +G  P+E+++  +LTAL    
Sbjct: 356 LFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTAL---P 412

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +   SE   + +K  Y+    +   T L+ A  + G++++A ++   +    D   W A+
Sbjct: 413 VISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVDEAAKVFSGID-NKDIVAWSAM 469

Query: 378 LSFSAIHGKADMASKMGKRL 397
           L+  A  G+ + A K+   L
Sbjct: 470 LAGYAQAGETEAAIKIFSEL 489



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 174/380 (45%), Gaps = 13/380 (3%)

Query: 44  SKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLA 103
           + S+ L Y+  LF+  P  +  S+T+L+   S    +       L    L    +    +
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFS 101

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           S+ K  A+L    LFG  LH   +K    D    G++LV  Y +  +  + + VFDE++E
Sbjct: 102 SVLKVSATLCDE-LFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKE 160

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           R+VV +  +I G+A+NS   + L++F  M+        +  + AL   AE     +   +
Sbjct: 161 RNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQV 220

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H   V +GLD+ + V   LI+ Y K G V  AR +FD+   V + + WN+M++GYA  G 
Sbjct: 221 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKT-EVKSVVTWNSMISGYAANGL 279

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK---VRYKLEPGLE 340
               L +F+ + +      E SF +++    N     +  ++ E++    V+Y       
Sbjct: 280 DLEALGMFYSMRLNHVRLSESSFASIIKLCANL----KELRFTEQLHCSVVKYGFVFDQN 335

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS-FSAIHGKAD---MASKMGKR 396
             T L+ A  +   + DA R+     F  +   W A++S F    GK +   + S+M ++
Sbjct: 336 IRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRK 395

Query: 397 LIDINPYDDSAYVIVANVLS 416
            +  N +  S  +    V+S
Sbjct: 396 GVRPNEFTYSVILTALPVIS 415


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 310/547 (56%), Gaps = 15/547 (2%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIVSWTALISA---HSNSPLSLNIFLSMLR 89
           ++   L   YSK   L+ +L +F+    S N+VSWTA+IS    + + PL++ +F S +R
Sbjct: 338 NVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLF-SRMR 396

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
              +  +PN+ T +++ K  ASLS   +    +H+  +K +    PF G+AL+  YS+F 
Sbjct: 397 EDRV--MPNEFTYSAMLK--ASLS---ILPPQIHAQVIKTNYQHIPFVGTALLASYSKFG 449

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           S ++A  +F  I ++DVV + AM+   AQ      +  +F  M    +    + +S  + 
Sbjct: 450 STEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVID 509

Query: 210 AAA-ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           A A   A ++Q R  H  ++       + V + L+  Y + G +  A+ VF E  +  + 
Sbjct: 510 ACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVF-ERQTDRDL 568

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WN+M++GYAQ G     +E F  +E  G   D  +FLAV+    + GL  E +++ + 
Sbjct: 569 VSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDS 628

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M   +K+ P +EHY C++    RAG+L++   +   MPF   A VWR LL    +H   +
Sbjct: 629 MVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVE 688

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +      +L+ + P+D S YV+++N+ +  G+W E  EVRK+M  R+V+KE G SWI++K
Sbjct: 689 LGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIK 748

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
            KVH F+A D+ H  ++ IY KL  ++   ++ GY P    +LH++ + +K   L  HSE
Sbjct: 749 NKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSE 808

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           +LALAFGL++  P G  L+IVKNLR+C DCH   K +S + +REI++RD +R+H F  G+
Sbjct: 809 RLALAFGLIA-TPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGA 867

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 868 CSCGDFW 874



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 173/377 (45%), Gaps = 11/377 (2%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
            +L+  Y K   +   + +F  +P  N+V+WT+L++  +++ +   +     R       
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN  T AS+    AS   A   G  +H+ S+K       F  ++L++ Y++    ++AK 
Sbjct: 199 PNPFTFASVLSAVAS-QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKS 257

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF+ +  RD+V +  ++ G   N   +++L +F + R++    T    +  ++  A L  
Sbjct: 258 VFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQ 317

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +   R +H   +  G      V T L D Y K G ++DA  +F       N ++W A+++
Sbjct: 318 LALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS 377

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           G  Q GD    + LF  +      P+E+++ A+L A  +  L  +    +  +K  Y+  
Sbjct: 378 GCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI-LPPQIHAQV--IKTNYQHI 434

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS----K 392
           P +   T L+++  + G  EDA  I   M  + D   W A+LS  A  G  + A+    K
Sbjct: 435 PFVG--TALLASYSKFGSTEDALSI-FKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNK 491

Query: 393 MGKRLIDINPYDDSAYV 409
           M  + I  N +  S+ +
Sbjct: 492 MAIQGIKPNEFTISSVI 508



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 178/388 (45%), Gaps = 25/388 (6%)

Query: 2   ALDLNQQPQPQNTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60
           ALDL Q+            VHA+++K   ++   + N+L+  Y+K  L+  +  +FN + 
Sbjct: 216 ALDLGQR------------VHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME 263

Query: 61  SPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLP--NQRTLASLFKTCASLSHAFLF 118
           + ++VSW  L++    +   L      L H + + +    Q T A++ K CA+L    L 
Sbjct: 264 TRDMVSWNTLMAGLQLNECELEAL--QLFHESRATMGKMTQSTYATVIKLCANLKQLAL- 320

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD-EIRERDVVCYGAMIVGFA 177
              LHS  LK   H      +AL   YS+     +A  +F      R+VV + A+I G  
Sbjct: 321 ARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCI 380

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN  +  ++ +F+ MR   V    +  S  L+A+  +   +    IH   + +       
Sbjct: 381 QNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQ----IHAQVIKTNYQHIPF 436

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           VGT L+  Y K G   DA  +F + +   + +AW+AM++ +AQ GD      LF+ + ++
Sbjct: 437 VGTALLASYSKFGSTEDALSIF-KMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQ 495

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  P+E++  +V+ A        +  +    + ++Y+    +   + L+S   R G ++ 
Sbjct: 496 GIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDS 555

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHG 385
           A+ I      + D   W +++S  A HG
Sbjct: 556 AQ-IVFERQTDRDLVSWNSMISGYAQHG 582



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 8/305 (2%)

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--FCGSALVHFYSRFRSPDN 153
           L +  TL+ + K C S+    L G  LH L +K   HD+     G++LV  Y +  S   
Sbjct: 96  LVDSATLSCVLKACRSVPDRVL-GEQLHCLCVKCG-HDRGEVSAGTSLVDMYMKCGSVCE 153

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
             +VF+ + +++VV + +++ G A      + +++F  MR+  +    +  +  L A A 
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVAS 213

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
             A++  + +H  +V  G   +V V   L++ Y K G+V DA+ VF+  +   + ++WN 
Sbjct: 214 QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNW-METRDMVSWNT 272

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           +MAG      +   L+LFH  E R        S  A +  LC         + +    ++
Sbjct: 273 LMAGLQLNECELEALQLFH--ESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK 330

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           +         T L  A  + G L DA  I        +   W A++S    +G   +A  
Sbjct: 331 HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390

Query: 393 MGKRL 397
           +  R+
Sbjct: 391 LFSRM 395


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 199/565 (35%), Positives = 317/565 (56%), Gaps = 15/565 (2%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHS- 75
           R +HAR L S    D  +   L+  Y+    +S + R+F+ +P+  N+  W  LI A++ 
Sbjct: 88  RQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYAR 147

Query: 76  NSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + P   ++ ++ +ML + ++   P+  T   + K CA+L      G  +H   ++ +   
Sbjct: 148 DGPCEAAIELYRAMLAYGSMK--PDNFTYPPVLKACAALLD-LSAGREVHDRVMRTNWAT 204

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F  + L+  Y++    D A  VF++   RD   + +MI    QN R  ++L++  +M 
Sbjct: 205 DVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMA 264

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           +  +  T+  +  A+ AAA  +A+ + R +HG+    G      + T L+D Y K+G V 
Sbjct: 265 AEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVM 324

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA---PDEYSFLAVL 310
            A  +F E L     I+WNAM+ G+   G      ELF    MR  A   PD  +F+ VL
Sbjct: 325 VAHVLF-EQLLHRELISWNAMICGFGMHGHADHAFELFS--RMRSEAQVMPDHITFVGVL 381

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  + G+  E+++  + M   Y ++P ++HYTCL+  +G +GR ++A  +   M  +PD
Sbjct: 382 SACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPD 441

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           + +W ALL+   IH   ++A    ++LI++ P D   YV+++N+ +  G+W+E A VRK+
Sbjct: 442 SGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKL 501

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           M +R ++K    SWIE+KGK H FL GD  H R++DIY +L  L     + GYVP    +
Sbjct: 502 MTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTPV 561

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
            HNV D EKR  +W HSE+LA+AFGL+S  PR K L + KNLR+C DCH   K IS++ +
Sbjct: 562 FHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLL-VTKNLRVCEDCHVVIKLISQIEQ 620

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REI++RDVNRYH F+NG C+C D W
Sbjct: 621 REIIIRDVNRYHHFVNGECSCKDHW 645



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 3/180 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           LR+     A+   R +H   +VSG   + ++ T L+D Y   G VS ARRVFDE  +  N
Sbjct: 75  LRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGN 134

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
              WN ++  YA+ G     +EL+  +L      PD +++  VL A C A L   + + +
Sbjct: 135 VFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKA-CAALLDLSAGREV 193

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
               +R      +   T LI    + G +++A  +        DAAVW ++++    +G+
Sbjct: 194 HDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIR-DAAVWNSMIAACGQNGR 252



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 4/206 (1%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           N    A++ ++C  LS A   G  LH+  L           + LV  Y+       A++V
Sbjct: 67  NHSNYATILRSCV-LSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRV 125

Query: 158 FDEI-RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGALRAAAELA 215
           FDE+  + +V  +  +I  +A++     ++ ++  M +   +    +     L+A A L 
Sbjct: 126 FDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALL 185

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            +   R +H   + +    +V V TGLID Y K G + +A  VF++  ++ ++  WN+M+
Sbjct: 186 DLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDT-TIRDAAVWNSMI 244

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAP 301
           A   Q G  +  L L   +   G AP
Sbjct: 245 AACGQNGRPAEALTLCRNMAAEGIAP 270


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 191/534 (35%), Positives = 295/534 (55%), Gaps = 4/534 (0%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
           Y K+  L+ + RLF+ +P+ N+V+W A+++        L    +         +PN  ++
Sbjct: 166 YFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSV 225

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
            + F  CA +++  L G   +    K          +++V FY + R    A+ VFD + 
Sbjct: 226 CAFFNACAGMTNLSL-GEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMG 284

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
            R+ V + +M+V +AQN    ++  V+   R +    T + VS  L   A L  ++  R 
Sbjct: 285 VRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRA 344

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +H  AV S +D N+ V + L+D YGK G + DA +VF E +   N + WNAM+ GYA  G
Sbjct: 345 LHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFE-MPQRNLVTWNAMIGGYAHIG 403

Query: 283 DQSTVLELFHLLEM-RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
           D    L +F  + M +  AP+  + + VLTA    GL  E  +  + MK R+ +EP +EH
Sbjct: 404 DAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEH 463

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
           Y C++  + RAG  E A +I   MP  P  +VW ALL    +HGK ++     ++L +++
Sbjct: 464 YACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFELD 523

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMH 461
           P D   +V+++N+L+  GRW E  +VRK MK+  ++K+ GRSWI  K  VHVF A D  H
Sbjct: 524 PQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWITWKNVVHVFQAKDTTH 583

Query: 462 ERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAP 521
           +   +I   LA+L  + +  GY+P     L+++ + EK   ++ HSEKLALAFGL+   P
Sbjct: 584 DMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEVFQHSEKLALAFGLIC-IP 642

Query: 522 RGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            G  +RI+KNLRIC DCH +FK+IS +  REI+VRD N +H F N  C+C D W
Sbjct: 643 PGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVRDNNMFHHFKNYECSCKDYW 696



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 197/426 (46%), Gaps = 18/426 (4%)

Query: 19  RIVHARALK--SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--- 73
           R  HARAL+  S      +  +L+  YSK +L   +       PSP +VS+TA IS    
Sbjct: 37  RAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAASLAADPSPTVVSYTAFISGAAQ 96

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LH 132
           H+    +L+ F +MLR   L   PN  T  S FK  AS       G  LH+L+L+   L 
Sbjct: 97  HARPLQALSAFAAMLR---LGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLP 153

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           D  F   A +  Y +      A+++FDE+  R+VV + A++     + R ++++  +  +
Sbjct: 154 DDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGL 213

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R +     +  V     A A +  +      +G     G  ++V V   ++D YGK   V
Sbjct: 214 RGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCV 273

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD  + V N+++W +M+  YAQ G +     ++      G  P ++   +VLT 
Sbjct: 274 GKARAVFD-GMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTT 332

Query: 313 LCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
              AGL G +  + +  + VR  ++  +   + L+   G+ G +EDAE++   MP + + 
Sbjct: 333 C--AGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMP-QRNL 389

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW---DEVAEVR 428
             W A++   A  G A  A  +  ++I +       Y+ + NVL+   R     E  E+ 
Sbjct: 390 VTWNAMIGGYAHIGDAHNALSVFDKMI-MGQETAPNYITLVNVLTACSRGGLTKEGYELF 448

Query: 429 KVMKDR 434
           + MK R
Sbjct: 449 QTMKWR 454


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 185/552 (33%), Positives = 311/552 (56%), Gaps = 17/552 (3%)

Query: 31  ADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAH----SNSPLSLNI 83
           +D  +   L+  Y+K  +   +  + ++F  +P+ N++SWTALIS +         ++ +
Sbjct: 282 SDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVEL 341

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
              ML     S  PN  T +SL K CA+LS     G  +H+  +K S+ +    G+ALV 
Sbjct: 342 LCEMLNE---SIEPNHLTYSSLLKACANLSDQD-SGRQIHARVMKTSIGNVNVVGNALVS 397

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y+     + A+K FD++ ER+++   + I    +  R   S S  + + S DVG + + 
Sbjct: 398 MYAESGCMEEARKAFDQLYERNLLSTSSDI---GETGRSNASWS--SQIESMDVGVSTFT 452

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
            +  L AAA +    + + +H  ++ +G + +  +   L+  Y + G + DA R FDE  
Sbjct: 453 FASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEME 512

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              N I+W ++++  A+ G     L LFH + + G  P++ +++AVL+A  + GL  E +
Sbjct: 513 DDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGK 572

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           ++   M+  ++L P +EHY C++  + R+G +++A      MP + DA VW+ LL     
Sbjct: 573 EYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRT 632

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           +   ++     + +ID+ P D + YV+++N+ +  G WDEVA +R +M+ R + KE G S
Sbjct: 633 YENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLS 692

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
           W+ V   +H F AGD  H R ++IY KLA L+ E + +GYVP    +LH++ D+ K + L
Sbjct: 693 WMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCL 752

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
             HSEK+A+AFGL++  P  K +RI KNLR+C DCH + KYIS+   REI++RD NR+HR
Sbjct: 753 LQHSEKIAVAFGLITTLPT-KPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHR 811

Query: 564 FLNGSCTCGDLW 575
             +G C+CG+ W
Sbjct: 812 MKDGKCSCGEYW 823



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 138/308 (44%), Gaps = 15/308 (4%)

Query: 19  RIVHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTAL---IS 72
           R +H R L +    AD  + N+L+T YSK   +  + R+F+ +    ++VSWTA+   ++
Sbjct: 63  RALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLT 122

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            +     +L +   ML        PN  TL +    C         G ++   ++K    
Sbjct: 123 RNGAEQEALVLLGEMLES---GLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFW 179

Query: 133 DKPF-CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                 G AL+  ++R      A+KVF+ + ER VV +  MI  + Q      ++ +F  
Sbjct: 180 GTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLG 239

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M         Y +S  + A AE  +    + +H   +  GL  +  V  GL+D Y K  +
Sbjct: 240 MLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQM 299

Query: 252 ---VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ-STVLELFHLLEMRGFAPDEYSFL 307
              +  AR+VF + +   N ++W A+++GY Q G Q +  +EL   +      P+  ++ 
Sbjct: 300 EQSMECARKVF-KRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYS 358

Query: 308 AVLTALCN 315
           ++L A  N
Sbjct: 359 SLLKACAN 366



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 122/274 (44%), Gaps = 20/274 (7%)

Query: 118 FGLSLHSLSLKLSLHD-KPFCGSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVG 175
            G +LH   L   + D      ++L+  YS+      A++VFD +R  RD+V + AM   
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFC 120

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA--AELAAMEQCRVIHGHAVVSGL- 232
             +N    ++L +  +M  S +    + +  A  A    EL       V+ G A+ +G  
Sbjct: 121 LTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVL-GFAIKTGFW 179

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
             +V VG  LID + + G +  AR+VF+  L     + W  M+  Y Q G     +ELF 
Sbjct: 180 GTDVSVGCALIDMFARNGDLVAARKVFN-GLVERTVVVWTLMITRYVQGGCAGKAVELFL 238

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC-------L 345
            +   GF PD Y+  ++++A    G AG  ++ +  + +R     GL   TC       +
Sbjct: 239 GMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQ-LHSLVLRL----GLVSDTCVSCGLVDM 293

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            + +     +E A ++   MP   +   W AL+S
Sbjct: 294 YTKLQMEQSMECARKVFKRMPTH-NVMSWTALIS 326



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 8/100 (8%)

Query: 16  TDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISA 73
           T  + +HA ++K+  ++D+ I N+L++ YS+   L  + R F+ +    N++SWT++ISA
Sbjct: 467 TKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISA 526

Query: 74  ---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
              H ++  +L++F  M+        PN  T  ++   C+
Sbjct: 527 LAKHGHAERALSLFHDMILS---GVKPNDVTYIAVLSACS 563


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 194/543 (35%), Positives = 303/543 (55%), Gaps = 10/543 (1%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTL 93
           N LI  Y ++  L  + ++F+ +P   + +W A+I+       +   L++F  M     L
Sbjct: 29  NILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREM---HGL 85

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            F P++ TL S+F   A L  +   G  +H  ++K  L       S+L H Y R     +
Sbjct: 86  GFSPDEYTLGSVFSGSAGL-RSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQD 144

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
            + V   +  R++V +  +I+G AQN      L ++  M+ S            L + ++
Sbjct: 145 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 204

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           LA   Q + IH  A+  G    V V + LI  Y K G + DA + F E     + + W++
Sbjct: 205 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE-DEVMWSS 263

Query: 274 MMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           M++ Y   G     ++LF+ + E      +E +FL +L A  ++GL  +  +  + M  +
Sbjct: 264 MISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEK 323

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y  +PGL+HYTC++  +GRAG L+ AE I  +MP +PD  +W+ LLS   IH  A+MA K
Sbjct: 324 YGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQK 383

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
           + K +++I+P D + YV++ANV +   RW +V+EVRK M+D+ V+KE G SW E KG+VH
Sbjct: 384 VFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVH 443

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
            F  GDR   ++++IY+ L EL  E +  GY P    +LH++ + EK   L  HSEKLA+
Sbjct: 444 QFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAV 503

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AF L+   P G  +RI+KNLR+C DCH +FKYIS ++ REI +RD +R+H F+NG C+CG
Sbjct: 504 AFALMI-LPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCG 562

Query: 573 DLW 575
           D W
Sbjct: 563 DYW 565



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 5/153 (3%)

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           +N +    LI+GY +AG +  AR+VFDE +       WNAM+AG  Q       L LF  
Sbjct: 23  KNFMSSNILINGYVRAGDLVSARKVFDE-MPDRKLTTWNAMIAGLIQFEYNEEGLSLFRE 81

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
           +   GF+PDEY+  +V +   +AGL   S  + I    ++Y LE  L   + L     R 
Sbjct: 82  MHGLGFSPDEYTLGSVFSG--SAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRN 139

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           G+L+D E +  +MP   +   W  L+  +A +G
Sbjct: 140 GKLQDGEIVIRSMPVR-NLVAWNTLIMGNAQNG 171



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 115/269 (42%), Gaps = 24/269 (8%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI--SAHSNS 77
           +H  A+K   + D  + ++L   Y ++  L     +   +P  N+V+W  LI  +A +  
Sbjct: 113 IHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGC 172

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P ++     M++       PN+ T  ++  +C+ L+     G  +H+ ++K+        
Sbjct: 173 PETVLYLYKMMKISGCR--PNKITFVTVLSSCSDLAIRGQ-GQQIHAEAIKIGASSVVAV 229

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA------QNSRLVDSLSVFAD 191
            S+L+  YS+     +A K F E  + D V + +MI  +       +  +L +S++   +
Sbjct: 230 VSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTE 289

Query: 192 MRSSDVG--STMYCV--SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           M  ++V   + +Y    SG      EL  M    ++  +    GL       T ++D  G
Sbjct: 290 MEVNEVAFLNLLYACSHSGLKDKGLELFDM----MVEKYGFKPGLKHY----TCVVDLLG 341

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +AG +  A  +        + + W  +++
Sbjct: 342 RAGCLDQAEAIIKSMPIKPDPVIWKTLLS 370


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 312/572 (54%), Gaps = 24/572 (4%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
           VH  A+K  +++  S+ N+L + Y+K   L  +LR F  IP  N+++WT +ISA +    
Sbjct: 201 VHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEE 260

Query: 79  ---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              L +++F+ ML       +PN+ TL S+   C +     L G  + + S K+      
Sbjct: 261 CVELGMSLFIDMLMD---GVMPNEFTLTSVMSLCGTRLDLNL-GKQVQAFSFKIGCETNL 316

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ-----------NSRLVD 184
              ++ ++ Y R    D A ++F+++ +  ++ + AMI G+AQ            SR   
Sbjct: 317 PVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQ 376

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L++F D++ S +   ++  S  L   + + A+EQ   IH   + SG   +V+V + L++
Sbjct: 377 ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVN 436

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G + DA + F E +     + W +M++GY+Q G     ++LF  + + G  P+E 
Sbjct: 437 MYNKCGCIQDANKAFLE-MPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEI 495

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F+++L+A   AGL  E+E + + MK  Y +EP ++HY C+I    R GR+EDA      
Sbjct: 496 TFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKR 555

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
             FEP+ A+W +L++    HG  ++A     +L+++ P     Y+++ N+     RW +V
Sbjct: 556 TGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDV 615

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
           A VRK+MK   V     RSWI +K KV+ F A DR H +  ++Y  L  L+E+ + +GY 
Sbjct: 616 ARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYE 675

Query: 485 PVWDEMLHNVGDREKREA--LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           P  +  L +  D EK  A  L +HSE+LA+A GL+   P G T+R+ KN+ +CRDCH S 
Sbjct: 676 PYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQ-TPPGATVRVTKNITMCRDCHSSI 734

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           K  S +  REI+VRD  R H+F +G C+CGD 
Sbjct: 735 KLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 198/432 (45%), Gaps = 26/432 (6%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           R VH    K+ + AD  +  +L+  Y + +    + RLF+ +P  N+V+WTAL++ +   
Sbjct: 98  RAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLN 157

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           S   L L +F+ ML    +   P+  TL +    C +     L G  +H  ++K      
Sbjct: 158 SQPALGLEVFVEMLE---MGRYPSHYTLGATLNACLASCDVDL-GKQVHGYAIKYGAESI 213

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMR 193
              G++L   Y++  S D+A + F  I E++V+ +  MI   A++   V+  +S+F DM 
Sbjct: 214 TSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDML 273

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              V    + ++  +        +   + +   +   G + N+ V    +  Y + G   
Sbjct: 274 MDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETD 333

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQS-----------TVLELFHLLEMRGFAPD 302
           +A R+F E +   + I WNAM++GYAQ  D +             L +F  L+     PD
Sbjct: 334 EAMRLF-EQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPD 392

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
            ++F ++L+ +C+A +A E  + I    ++      +   + L++   + G ++DA +  
Sbjct: 393 LFTFSSILS-VCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYVIVANVLSGVGR 420
           + MP       W +++S  + HG+   A ++ +  RL  + P ++  +V + +  S  G 
Sbjct: 452 LEMPTRT-FVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRP-NEITFVSLLSACSYAGL 509

Query: 421 WDEVAEVRKVMK 432
            +E      +MK
Sbjct: 510 VEEAEHYFDMMK 521



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 7/187 (3%)

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V S MY     L    E  ++   R +HGH   +G   ++ V T L++ Y +     DAR
Sbjct: 76  VQSAMYV--PLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDAR 133

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCN 315
           R+FD  +   N + W A++ GY      +  LE+F  +LEM G  P  Y+  A L A C 
Sbjct: 134 RLFD-GMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEM-GRYPSHYTLGATLNA-CL 190

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           A    +  K +    ++Y  E        L S   + G L+ A R    +P E +   W 
Sbjct: 191 ASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIP-EKNVITWT 249

Query: 376 ALLSFSA 382
            ++S  A
Sbjct: 250 TMISACA 256


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 188/566 (33%), Positives = 321/566 (56%), Gaps = 18/566 (3%)

Query: 21  VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---N 76
           +H   +KS     S+  N  I  YSK   +  + ++FN +P  N+VSW A+I+ H+   N
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGN 186

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS--LSLKLSLHDK 134
              SL +F  M     +   P++ T  S  K C +L  A   G  +H+  ++    +  +
Sbjct: 187 GRKSLVLFQRMQGQGEV---PDEFTFTSTLKACGALG-AIRGGTQIHASLITRGFPISIR 242

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               SA+V  Y++      A+KVFD I +++++ + A+I GFAQ   L++++ +F  +R 
Sbjct: 243 NIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRE 302

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIV 252
           S      + +S  +   A+LA +EQ + +H +   V SGLD  + V   +ID Y K G+ 
Sbjct: 303 SVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLD--ISVANSIIDMYLKCGLT 360

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +A R+F E + V N ++W  M+ GY + G     + LF+ +++ G   DE ++LA+L+A
Sbjct: 361 EEAERLFSE-MQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSA 419

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++GL  ES+++  R+   ++++P +EHY C++  +GRAG+L++A+ +   M  +P+  
Sbjct: 420 CSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEG 479

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W+ LLS   +HG  ++  ++G+ L  ++  +   YV+++N+ +  G W E   VRK++K
Sbjct: 480 IWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVK 539

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC-ERLGYVPVWDEML 491
            + ++KE G+SW+E+  ++H F  GD  H  TE I+  L E+     E +GY       L
Sbjct: 540 AKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFAL 599

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGA--PRGKTLRIVKNLRICRDCHESFKYISRVV 549
           H+V +  K E L  HSEKLA+   LV      +G  +R+ KNLR+C DCHE  K +S+++
Sbjct: 600 HDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKIL 659

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++  VVRD NR+HRF +G C+CGD W
Sbjct: 660 KKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 187/414 (45%), Gaps = 16/414 (3%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
           VHA A+      D  + N+LI  Y K + +  +  +F+ +   N+VSWTAL+  +    N
Sbjct: 26  VHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGN 85

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +  SL +   M         PN+ T ++  K C +L      G+ +H + +K        
Sbjct: 86  AKGSLALLCEM---GYSGVKPNEFTFSTSLKACGALG-VVENGMQIHGMCVKSGFEWVSV 141

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+A +  YS+      A++VF+++  R++V + AMI G         SL +F  M+   
Sbjct: 142 VGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQG 201

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV--IVGTGLIDGYGKAGIVSD 254
                +  +  L+A   L A+     IH   +  G   ++  I+ + ++D Y K G + +
Sbjct: 202 EVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFE 261

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A++VFD  +   N I+W+A++ G+AQ+G+    ++LF  L       D +    ++    
Sbjct: 262 AQKVFDR-IEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFA 320

Query: 315 NAGLAGESEKW-IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           +  L  + ++     +KV   L+  + +   +I    + G  E+AER+   M    +   
Sbjct: 321 DLALVEQGKQMHCYILKVPSGLDISVAN--SIIDMYLKCGLTEEAERLFSEMQVR-NVVS 377

Query: 374 WRALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIVANVLSGVGRWDEVAE 426
           W  +++    HG  + A  +  R+ +D    D+ AY+ + +  S  G   E  E
Sbjct: 378 WTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQE 431



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           +  ++ LA L + C S +  F  GL +H+ ++ +         + L+  Y +    D A 
Sbjct: 1   MSERQRLAKLLRNC-SKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLAC 59

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            VFD + ER+VV + A++ G+ Q      SL++  +M  S V    +  S +L+A   L 
Sbjct: 60  SVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALG 119

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            +E    IHG  V SG +   +VG   ID Y K G +  A +VF++ +   N ++WNAM+
Sbjct: 120 VVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNK-MPFRNLVSWNAMI 178

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           AG+  +G+    L LF  ++ +G  PDE++F + L A C A
Sbjct: 179 AGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKA-CGA 218


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 311/560 (55%), Gaps = 6/560 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R  H   LK+   +D  + N LI  Y        +  +F+     ++V+W  +I+AH N 
Sbjct: 131 RRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNK 190

Query: 78  PLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            LS   F  +     L  L P++ T+ SL   CA L +    G  LHS S +L L +   
Sbjct: 191 GLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGN-LERGKFLHSYSKELGLDENLR 249

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +A++  Y +    ++A++VF+ IRE+DV+ + +M+ G A++    ++L++F  M+ + 
Sbjct: 250 VNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNK 309

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      + G L A A+  A++Q + IH       ++ ++++ T L+D Y K G +  A 
Sbjct: 310 IELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLAL 369

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VF   + V N   WNA++ G A  G     + LF  +E     PD+ +F+A+L A  +A
Sbjct: 370 QVF-RRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHA 428

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E     + MK ++++EP +EHY C++  + RA +++DA      MP + ++ +W  
Sbjct: 429 GLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWAT 488

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL      G  D+A K+G+R+I++ P     YV+++N+ +GV +WD   ++RK MK++ +
Sbjct: 489 LLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGI 548

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE-RLGYVPVWDEMLHNVG 495
            K  G SWIE+ G +H F+AGDR H +TE IY  + E+        G+VP    +L ++ 
Sbjct: 549 EKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIE 608

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + EK  +L+ HSEKLA+A GL+S  P G  +RIVKNLR+C DCH   K  S+V  REIV 
Sbjct: 609 EEEKEHSLFLHSEKLAIALGLIS-TPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVA 667

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD +R+H F  GSC+C D W
Sbjct: 668 RDRSRFHHFKEGSCSCMDFW 687



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 194/428 (45%), Gaps = 29/428 (6%)

Query: 22  HARALKSSQADRSIYNNLITNY---SKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS- 77
           HA  L++      ++++ + ++   S S  L+Y+ +LF  + +P+      +I  ++ S 
Sbjct: 31  HALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQ 90

Query: 78  ----PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                +SL  F+     P      +  T   +   CA L  A   G   H   LK     
Sbjct: 91  NPYEAVSLYYFMVERGVPV-----DNYTYPFVLAACARLG-AVKLGRRFHCEVLKNGFGS 144

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI-----VGFAQNS-RLVDSLS 187
             F  +AL+ FY    S   A  VFDE   RDVV +  MI      G ++ +  L+D ++
Sbjct: 145 DLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMT 204

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
              ++R  +V  TM  +   + A A+L  +E+ + +H ++   GLD N+ V   ++D Y 
Sbjct: 205 KLDNLRPDEV--TMVSL---VPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYC 259

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K   +  A+ VF+  +   + ++W +M++G A+ G     L LF  +++     DE + +
Sbjct: 260 KCDDIESAQEVFNR-IREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLV 318

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            VL+A    G A +  K+I  +  ++++   L   T L+    + G ++ A ++   M  
Sbjct: 319 GVLSACAQTG-ALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRV 377

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLI-DINPYDDSAYVIVANVLSGVGRWDEVAE 426
             +   W AL+   A+HG  + A  +  ++  D    DD  ++ +    S  G  DE   
Sbjct: 378 R-NVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLA 436

Query: 427 VRKVMKDR 434
           + + MK++
Sbjct: 437 MFQAMKNK 444


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 204/566 (36%), Positives = 311/566 (54%), Gaps = 18/566 (3%)

Query: 21  VHARALKSS--QADRSIYNNLITNYS--KSNLLSYSL----RLFNHIP-SPNIVSWTALI 71
           +HARAL++    +   +  +L+ + +  ++  L Y++    RL  H P  P  ++    I
Sbjct: 34  IHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFPLNTVLRI 93

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           +A S  P      +++  H     LP+  T   L + CA L  A   G  LH+ + K   
Sbjct: 94  AAGSPRPR-----VALELHRRRLALPDTHTYPPLIQACARLL-ALREGECLHAEAAKNGF 147

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDE--IRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
               F  ++LVH Y      ++A KVFDE  +R R++V + +M+  FA N R  + L+VF
Sbjct: 148 VTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVF 207

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            +M   D     + +   L A AE  A+   R +H +    GL  N  V   LID Y K 
Sbjct: 208 WEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKC 267

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G V+DARR+F+E       ++W +++ G A  G     LELF L+E     P E + + V
Sbjct: 268 GSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGV 327

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  + GL  +  ++ +RMK  Y + P +EH  C++  +GRAGR+E+A    + MP EP
Sbjct: 328 LYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEP 387

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           +A VWR LL   A+H K ++     +RL++++P     YV+++N+ + VG W +V  +RK
Sbjct: 388 NAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRK 447

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
            M   RVRK  G S +E++  V+ F+ GDR H  +E IY  LAE+ E   R GY+P    
Sbjct: 448 TMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSN 507

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +L ++ + EK  AL YHSE+LA+AF L+   P G  +RI+KNLR+C DCH +F  IS+V 
Sbjct: 508 VLADIEEEEKETALNYHSERLAIAFALLKSLP-GIPIRIIKNLRMCGDCHVAFNLISKVY 566

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
           +REI+VRD +R+H F  G+C+C D W
Sbjct: 567 DREIIVRDRSRFHHFQGGACSCKDYW 592


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 295/556 (53%), Gaps = 4/556 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  ++K+  ++D  +   LI  YSK   L  + R+   + + ++VSWT++I+ +     
Sbjct: 367 IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEF 426

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 +          P+   LAS    CA +  A   G  +HS              +
Sbjct: 427 CKEALETFKDMQLFGIWPDNIGLASAISACAGIK-AMRQGQQIHSRVYVSGYSADVSIWN 485

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV+ Y+R      A  +F+ I  +D + +  M+ GFAQ+    ++L VF  M  + V  
Sbjct: 486 ALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKY 545

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            ++    ++ A+A LA ++Q + IH   + +G      V   LI  YGK G + DA+  F
Sbjct: 546 NVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQF 605

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +S  N ++WN ++   +Q G     L+LF  ++  G  P++ +F+ VL A  + GL 
Sbjct: 606 FE-MSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV 664

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E   + + M   + + P  +HY C++  +GRAG+L+ A +    MP   +A VWR LLS
Sbjct: 665 EEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLS 724

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +H   ++     K L+++ P+D ++YV+++N  +  G+W     VRK+MKDR VRKE
Sbjct: 725 ACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKE 784

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            GRSWIEVK  VH F  GDR+H     IY  LA+L +   ++GY+     + H     +K
Sbjct: 785 PGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQK 844

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
               + HSEKLA+AFGL+S  P    LR++KNLR+C DCH   K+ S V+ REIV+RDV 
Sbjct: 845 DPTAFVHSEKLAVAFGLMS-LPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVY 903

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F NG+C+CGD W
Sbjct: 904 RFHHFNNGNCSCGDFW 919



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 196/429 (45%), Gaps = 30/429 (6%)

Query: 4   DLNQQPQPQNTSTDPRIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSP 62
           DLN+  Q          +H+  LK+  + D  I  +L+  Y K  ++  +L +F      
Sbjct: 259 DLNKGKQ----------LHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRT 308

Query: 63  NIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119
           N+V W  ++ A+   S+   S ++F  M+        PN+ T   L +TC       L G
Sbjct: 309 NVVLWNLMLVAYGQISDLAKSFDLFCQMV---AAGVRPNEFTYPCLLRTCTYAGEINL-G 364

Query: 120 LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
             +H LS+K       +    L+  YS++   D A+++ + +  +DVV + +MI G+ Q+
Sbjct: 365 EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQH 424

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
               ++L  F DM+   +      ++ A+ A A + AM Q + IH    VSG   +V + 
Sbjct: 425 EFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIW 484

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
             L++ Y + G   +A  +F E +   + I WN M++G+AQ G     LE+F  +   G 
Sbjct: 485 NALVNLYARCGRSKEAFSLF-EAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGV 543

Query: 300 APDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
             + ++F++ ++A  +A LA  +  K I    ++       E    LIS  G+ G +EDA
Sbjct: 544 KYNVFTFVSSISA--SANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDA 601

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHG----KADMASKMGKRLIDINPYDDSAYVIVANV 414
           +     M  E +   W  +++  + HG      D+  +M +  +  N   D  ++ V   
Sbjct: 602 KMQFFEMS-ERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPN---DVTFIGVLAA 657

Query: 415 LSGVGRWDE 423
            S VG  +E
Sbjct: 658 CSHVGLVEE 666



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 169/365 (46%), Gaps = 13/365 (3%)

Query: 20  IVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           ++HA+A+     +  I  NL+ + Y+K  L+  + R+F  + + + VSW A++S ++ + 
Sbjct: 63  VIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF--GLSLHSLSLKLSLHDKPF 136
           L         +      +P    L+S+   C   + A LF  G  +H+   K     +  
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSAC---TKAALFEQGRLVHAQVYKQGSCSETV 179

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+AL+  Y RF S   A++VF E+   D V +  +I   AQ      +L +F +MR S 
Sbjct: 180 VGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLS- 238

Query: 197 VGSTMYCVSGA--LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            G T  CV+ A  L A A +  + + + +H + + +G+  + I+   L+D Y K G++ +
Sbjct: 239 -GWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVE 297

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F       N + WN M+  Y Q  D +   +LF  +   G  P+E+++  +L    
Sbjct: 298 ALEIFKSG-DRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCT 356

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            AG     E+ I  + ++   E  +     LI    + G L+ A RI   +    D   W
Sbjct: 357 YAGEINLGEQ-IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLE-AKDVVSW 414

Query: 375 RALLS 379
            ++++
Sbjct: 415 TSMIA 419



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 16/251 (6%)

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA------SLSHAFLFGLSLHSLS 126
           AH +    L++F + +R          R L S+   CA      S+ H  L  + +H+ +
Sbjct: 18  AHEDPEKLLSLFAAKVRQC--------RGLGSVDFACALRECRGSVKHWPLVPV-IHAKA 68

Query: 127 LKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186
           +   L +    G+ L+  Y++      A++VF+++  RD V + AM+ G+A+N    +++
Sbjct: 69  ITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAV 128

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
            ++  M  S V  T Y +S  L A  + A  EQ R++H      G     +VG  LI  Y
Sbjct: 129 GLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALY 188

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            + G +S A RVF E +   + + +N +++ +AQ G+  + LE+F  + + G+ PD  + 
Sbjct: 189 LRFGSLSLAERVFSE-MPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTI 247

Query: 307 LAVLTALCNAG 317
            ++L A  + G
Sbjct: 248 ASLLAACASIG 258


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 313/563 (55%), Gaps = 16/563 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISAH-- 74
           R++H + LKS    ++++   L+   +K   +  +  LF+ +    ++VSWTA+IS +  
Sbjct: 324 RVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQ 383

Query: 75  -SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
             ++  ++N+F S++R   +   PN  T    + T  ++ HA +F   +H+  +K +   
Sbjct: 384 NGDTDQAVNLF-SLMRREGVK--PNHFT----YSTILTVQHA-VFISEIHAEVIKTNYEK 435

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               G+AL+  + +  +  +A KVF+ I  +DV+ + AM+ G+AQ     ++  +F  + 
Sbjct: 436 SSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLT 495

Query: 194 SSDVGSTMYCVSGALRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
              +    +     + A  A  A++EQ +  H +A+   L+  + V + L+  Y K G +
Sbjct: 496 REGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNI 555

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A  +F       + ++WN+M++GYAQ G     LE+F  ++ R    D  +F+ V++A
Sbjct: 556 ESAHEIFKRQKE-RDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISA 614

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL G+ + +   M   + + P +EHY+C+I    RAG L  A  I   MPF P A 
Sbjct: 615 CAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAAT 674

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VWR +L+ S +H   ++     +++I + P   +AYV+++N+ +  G W E   VRK+M 
Sbjct: 675 VWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMD 734

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            RRV+KE G SWIEVK K + FLAGD  H  ++ IY+KL+EL      +GY P  + + H
Sbjct: 735 KRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFH 794

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ D +K   L +HSE+LA+AFGL++  P    L+IVKNLR+C DCH   K +S V +R 
Sbjct: 795 DIEDEQKETILSHHSERLAIAFGLIATLPE-IPLQIVKNLRVCGDCHSFIKLVSLVEKRY 853

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H F  G C+CGD W
Sbjct: 854 IVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 180/378 (47%), Gaps = 8/378 (2%)

Query: 21  VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH + +K       S+ N+L+  Y+K+  +    R+F+ +   ++VSW +L++ +S +  
Sbjct: 124 VHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRF 183

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +  ++          + P+  T++++    A+   A   G+ +H+L +KL    +    +
Sbjct: 184 NDQVWELFCLMQVEGYRPDYYTVSTVIAALANQG-AVAIGMQIHALVVKLGFETERLVCN 242

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +L+   S+     +A+ VFD +  +D V + +MI G   N + +++   F +M+ +    
Sbjct: 243 SLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKP 302

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T    +  +++ A L  +   RV+H   + SGL  N  V T L+    K   + DA  +F
Sbjct: 303 THATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLF 362

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
                V + ++W AM++GY Q GD    + LF L+   G  P+ +++  +LT      + 
Sbjct: 363 SLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFI- 421

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             SE   E +K  Y+    +   T L+ A  + G + DA ++   +    D   W A+L+
Sbjct: 422 --SEIHAEVIKTNYEKSSSVG--TALLDAFVKIGNISDAVKV-FELIETKDVIAWSAMLA 476

Query: 380 FSAIHGKADMASKMGKRL 397
             A  G+ + A+K+  +L
Sbjct: 477 GYAQAGETEEAAKIFHQL 494



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 182/393 (46%), Gaps = 23/393 (5%)

Query: 13  NTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLS----YSLRLFNHIPSPNIVSWT 68
           NTST+P +   R      A+  + ++++   +++ L      ++ +LF+  P  ++    
Sbjct: 12  NTSTNPILRIRRYQLHCHANPLLQSHVVALNARTLLRDSDPRFAQQLFDQTPLRDLKQHN 71

Query: 69  ALISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL 125
            L+  +S    +  +L++F+S+ R       P+  T++ +   CA  S     G  +H  
Sbjct: 72  QLLFRYSRCDQTQEALHLFVSLYRS---GLSPDSYTMSCVLSVCAG-SFNGTVGEQVHCQ 127

Query: 126 SLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDS 185
            +K  L      G++LV  Y++  +  + ++VFDE+ +RDVV + +++ G++ N R  D 
Sbjct: 128 CVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWN-RFNDQ 186

Query: 186 L-SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +  +F  M+        Y VS  + A A   A+     IH   V  G +   +V   LI 
Sbjct: 187 VWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLIS 246

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
              K+G++ DAR VFD N+   +S++WN+M+AG+   G      E F+ +++ G  P   
Sbjct: 247 MLSKSGMLRDARVVFD-NMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHA 305

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH----YTCLISAMGRAGRLEDAER 360
           +F +V+ +      A   E  + R+     L+ GL       T L+ A+ +   ++DA  
Sbjct: 306 TFASVIKS-----CASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFS 360

Query: 361 IAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           +   M        W A++S    +G  D A  +
Sbjct: 361 LFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNL 393


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 189/540 (35%), Positives = 302/540 (55%), Gaps = 8/540 (1%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSF 95
           L+  Y+K   L Y+ R+F+ +P+ N V+W+ALI      S    +  +F +ML    L F
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ-GLCF 337

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           L +  ++AS  + CASL H    G  LH+L  K  +H     G++L+  Y++    D A 
Sbjct: 338 L-SPTSIASALRACASLDH-LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            +FDE+  +D V Y A++ G+ QN R  ++  VF  M++ +V      +   + A + LA
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 455

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A++  R  HG  ++ GL     +   LID Y K G +  +R+VF+  +   + ++WN M+
Sbjct: 456 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNM-MPSRDIVSWNTMI 514

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           AGY   G       LF  +   GF PD  +F+ +L+A  ++GL  E + W   M+  Y L
Sbjct: 515 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGL 574

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
            P +EHY C++  + R G L++A     +MP   D  VW ALL    ++   D+  K+ +
Sbjct: 575 TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSR 634

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
            + ++ P     +V+++N+ S  GR+DE AEVR + K +  +K  G SWIE+ G +H F+
Sbjct: 635 MIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFV 694

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
            GD+ H ++ +IY +L  ++   ++LGY P    +L ++ + EK +AL  HSEKLA+A+G
Sbjct: 695 GGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYG 754

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++S     KT+ + KNLR+C DCH   K+IS +  R I+VRD NR+H F NG C+CGD W
Sbjct: 755 ILS-LSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 197/436 (45%), Gaps = 33/436 (7%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H  A+ +  QAD  +   L+  Y K   L  +  +F  +P+ ++V+W A+++ +++ 
Sbjct: 145 RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 204

Query: 78  P---------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
                     LS+ + +  LR       PN  TL +L    A    A   G S+H+  ++
Sbjct: 205 GMYHHAVAHLLSMQMQMHRLR-------PNASTLVALLPLLAQQG-ALAQGTSVHAYRIR 256

Query: 129 LSLH----------DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
             LH          D    G+AL+  Y++  S   A++VFD +  R+ V + A+I GF  
Sbjct: 257 ACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVL 316

Query: 179 NSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
            SR+  +  +F  M +  +   +   ++ ALRA A L  +     +H     SG+  ++ 
Sbjct: 317 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 376

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
            G  L+  Y KAG++  A  +FDE ++V ++++++A+++GY Q G       +F  ++  
Sbjct: 377 AGNSLLSMYAKAGLIDQAIALFDE-MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC 435

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
              PD  + ++++ A C+   A +  +      +   L         LI    + GR++ 
Sbjct: 436 NVEPDAATMVSLIPA-CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDL 494

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLS 416
           + ++   MP   D   W  +++   IHG    A+ +   + ++  P D   ++ + +  S
Sbjct: 495 SRQVFNMMP-SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553

Query: 417 GVGRWDEVAEVRKVMK 432
             G   E      VM+
Sbjct: 554 HSGLVIEGKHWFHVMR 569



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 177/393 (45%), Gaps = 37/393 (9%)

Query: 42  NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS-----LNIFLSMLRHPTLSFL 96
           ++  S  LS +  LF+ IPSP++ ++  LI A+S+S  +     L+++  MLRH      
Sbjct: 66  DHIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRH---RVA 122

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN  T     K C++L+     G ++H  ++   L    F  +AL+  Y +     +A  
Sbjct: 123 PNNYTFPFALKACSALADHHC-GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH 181

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-----RSSDVGSTMYCVSGALRAA 211
           +F  +  RD+V + AM+ G+A +     +++    M     R     ST+  +   L   
Sbjct: 182 IFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL---LPLL 238

Query: 212 AELAAMEQCRVIHGHAVVSGLDRN----------VIVGTGLIDGYGKAGIVSDARRVFDE 261
           A+  A+ Q   +H + + + L  N          V++GT L+D Y K G +  ARRVFD 
Sbjct: 239 AQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 298

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG---FAPDEY-SFLAVLTALCNAG 317
            +   N + W+A++ G+      +    LF  +  +G    +P    S L    +L +  
Sbjct: 299 -MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLR 357

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  +    + +  V   L  G      L+S   +AG ++ A  +   M  + D   + AL
Sbjct: 358 MGEQLHALLAKSGVHADLTAG----NSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSAL 412

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           +S    +G+A+ A  + K++   N   D+A ++
Sbjct: 413 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 445


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 201/580 (34%), Positives = 319/580 (55%), Gaps = 18/580 (3%)

Query: 5   LNQQPQPQNTSTDPRI--VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPS 61
           LN  P   + S  P +  +H  +LK     D  + N  + +Y+K   LSY+ R+F+ I S
Sbjct: 383 LNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRS 442

Query: 62  PNIVSWTALISAHSNSP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
             + SW ALI  ++ S    LSL+  L M        LP+  T+ SL   C+ L  +   
Sbjct: 443 KTLNSWNALIGGYAQSSDPRLSLDAHLQM---KNSGLLPDNFTVCSLLSACSKLK-SLRL 498

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H   ++  L    F   +++  Y         + +FD + +  +V +  +I G  Q
Sbjct: 499 GKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQ 558

Query: 179 NSRLVDSLSVFADMRSSDV---GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           N     +L +F  M    +   G +M  V GA    + L ++   R  H +A+   L+ N
Sbjct: 559 NGFPERALGLFRQMVLYGIQPCGISMMTVFGA---CSLLPSLRLGREAHAYALKHLLEDN 615

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
             +   +ID Y K G ++ + +VF+  L   ++ +WNAM+ GY   G     ++LF  ++
Sbjct: 616 AFIACSIIDMYAKNGAITQSSKVFN-GLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQ 674

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G  PD+ +FL VLTA  ++GL  E  +++++MK  + L+P L+HY C+I  +GRAG+L
Sbjct: 675 RTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQL 734

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
           ++A R+A  M  EPD  +W +LLS+  IH   +M  K+  +L  + P     YV+++N+ 
Sbjct: 735 DNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLY 794

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           +G+G+WD+V +VR+ MK+  +RK+ G SWIE+ GKV  F+ G+R  +  E+I +  + L 
Sbjct: 795 AGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILE 854

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
            +  ++GY P    + H++ + EK E L  HSEKLA+ +GL+     G TLR+ KNLRIC
Sbjct: 855 MKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIK-TSEGTTLRVYKNLRIC 913

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            DCH + K IS+V+EREIVVRD  R+H F  G C+CGD W
Sbjct: 914 VDCHNAAKLISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 131/265 (49%), Gaps = 19/265 (7%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           ++D  +   +IT Y+       S   F+ + S N+  W A+IS++S + L    L +F+ 
Sbjct: 117 RSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIK 176

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M+    L  LP+  T   + K CA +S   + GL++H L +K  L +  F G+ALV FY 
Sbjct: 177 MISKTHL--LPDNFTFPCVIKACAGISDVGI-GLAVHGLVVKTGLVEDLFVGNALVSFYG 233

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
                 +A K+FD + ER++V + +MI  F+ N    D  +   D+ +         V  
Sbjct: 234 THGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG---DDGAFMPDVAT---------VVT 281

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L   A    +   + +HG AV   LD+ ++V   L+D Y K G + D++ +F  N +  
Sbjct: 282 VLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLN-NNK 340

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELF 291
           N ++WN M+ G++ +GD     +L 
Sbjct: 341 NVVSWNTMVGGFSAEGDIHGTFDLL 365



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 176/383 (45%), Gaps = 23/383 (6%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   +K+    D  + N L++ Y     +S +L+LF+ +P  N+VSW ++I   S++  
Sbjct: 209 VHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG- 267

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                         +F+P+  T+ ++   CA        G  +H  ++KLSL  +    +
Sbjct: 268 -----------DDGAFMPDVATVVTVLPVCAR-EREIGVGKGVHGWAVKLSLDKELVVNN 315

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR--SSDV 197
           AL+  YS++    +++ +F     ++VV +  M+ GF+    +  +  +   M   S DV
Sbjct: 316 ALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDV 375

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +    +  A+    + + +   + +H +++      + ++    +  Y K G +S A+R
Sbjct: 376 KADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQR 435

Query: 258 VFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           VF    S  LNS  WNA++ GYAQ  D    L+    ++  G  PD ++  ++L+A C+ 
Sbjct: 436 VFHGIRSKTLNS--WNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSA-CSK 492

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV-WR 375
             +    K +    +R  LE  L  Y  ++S     G L   + +  AM  E ++ V W 
Sbjct: 493 LKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAM--EDNSLVSWN 550

Query: 376 ALLSFSAIHGKADMASKMGKRLI 398
            +++    +G  + A  + ++++
Sbjct: 551 TVITGHLQNGFPERALGLFRQMV 573



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 21/266 (7%)

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           D   C + ++  Y+   SPD+++  FD +R +++  + A+I  +++N    + L +F  M
Sbjct: 119 DDVLC-TRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKM 177

Query: 193 RS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
            S + +    +     ++A A ++ +     +HG  V +GL  ++ VG  L+  YG  G 
Sbjct: 178 ISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGF 237

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           VSDA ++FD  +   N ++WN+M+  ++  GD               F PD  + + VL 
Sbjct: 238 VSDALKLFDI-MPERNLVSWNSMIRVFSDNGDDG------------AFMPDVATVVTVLP 284

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
                   G   K +    V+  L+  L     L+    + G + D++ I   +    + 
Sbjct: 285 VCAREREIGVG-KGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMI-FKLNNNKNV 342

Query: 372 AVWRALL-SFSA---IHGKADMASKM 393
             W  ++  FSA   IHG  D+  +M
Sbjct: 343 VSWNTMVGGFSAEGDIHGTFDLLRQM 368


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 198/564 (35%), Positives = 308/564 (54%), Gaps = 14/564 (2%)

Query: 21  VHARALKS----SQADRSIYNNLITNYS--KSNLLSYSLRLFNHI-PSPNIVSWTALISA 73
           +HARAL++    + +   +  +L+ + +  K+  L Y++ + + + PSP+  S   ++  
Sbjct: 40  LHARALRAAPGVTPSHPLLAKHLLFHLAALKAPPLRYAVAVLSGLLPSPDPFSLNTVLRI 99

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
            ++S           RH      P+  T   L + CA L  A  +G  LH+ + K  L  
Sbjct: 100 FASSARPRVALALHRRHLAP---PDTHTYPPLLQACARLL-ALRYGEGLHAEACKNGLVS 155

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
             F  ++LVH Y      ++A +VFDEI   ER++V + +++ GFA N R  + L+VF +
Sbjct: 156 LVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFRE 215

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M   +     + V   L A AE+  +   R +H      GL  N   G  LID Y K G 
Sbjct: 216 MLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGG 275

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           V DAR++F E       ++W +++ G A  G     L+LF ++E     P E + + VL 
Sbjct: 276 VDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLY 335

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  +  ++ ++MK  Y + P +EH  C++  +GRAGR+E+A      MP EP+A
Sbjct: 336 ACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNA 395

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            VWR LL   A+H K ++      RL++++P     YV+++N+ +GVGRW +V  +RK M
Sbjct: 396 VVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTM 455

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
               VRK  G S +E++  V+ F+ GDR H  T+ IY  L ++ E   R GY+P    +L
Sbjct: 456 VTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVL 515

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            ++ D EK  AL YHSE+LA+AF L+   P G  +RIVKNLR+C DCH + K IS+V +R
Sbjct: 516 ADIEDEEKESALNYHSERLAIAFALLKSLP-GTPIRIVKNLRVCGDCHMAIKLISKVYDR 574

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD +R+H F  G+C+C D W
Sbjct: 575 EIIVRDRSRFHHFKGGACSCKDYW 598


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 214/616 (34%), Positives = 318/616 (51%), Gaps = 64/616 (10%)

Query: 10  QPQNTSTDPRIVHARALKSSQADRSIYNNLIT----NYSKSNLLSYSLRLFNHIPSPNIV 65
           Q  N+    + VHA  L+    + S   N +     N+  +N   YS R+F+    PNI 
Sbjct: 18  QGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTN---YSHRIFHQTKEPNIF 74

Query: 66  SWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
            +  +I     + +   S+ I+ SM R   LS  P+  T   L K CA L  + L G+ L
Sbjct: 75  LFNTMIHGLVLNDSFQESIEIYHSM-RKEGLS--PDSFTFPFLLKACARLLDSKL-GIKL 130

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER------------------ 164
           H L +K       F  ++LV  Y +    DNA KVFD+I E+                  
Sbjct: 131 HGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKC 190

Query: 165 --------------------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
                               D+V + +MI G+A N    ++L +F  M +       Y +
Sbjct: 191 REAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAM 250

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRN-----VIVGTGLIDGYGKAGIVSDARRVF 259
            G L A A L A+E      G+   + +DRN      ++GT LID Y K G +  A  VF
Sbjct: 251 VGVLCACARLGALEL-----GNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVF 305

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
              +   + + WNA ++G A  G       LF  +E  G  PD  +F+ +L A  +AGL 
Sbjct: 306 -RGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLV 364

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E  ++   M+  + L P +EHY C++  +GRAG L++A ++  +MP E +A VW ALL 
Sbjct: 365 DEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLG 424

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +H    +   + K+LI + P +   YV+++N+ S   +W++ A++R +M +R ++K 
Sbjct: 425 GCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKV 484

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SWIEV G VH FL GD  H  +E IY KL EL+++ +  GYVP  D +L ++ + EK
Sbjct: 485 PGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEK 544

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              +  HSEKLA+AFGL+S AP  K +R+VKNLR+C DCHE+ K+ISR   REI+VRD N
Sbjct: 545 EHFIGCHSEKLAIAFGLISTAPNDK-IRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNN 603

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +GSC+C D W
Sbjct: 604 RFHCFNDGSCSCKDYW 619



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 134/323 (41%), Gaps = 43/323 (13%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           LF+   SL H       +H+  L+L L +  +  + ++ F   F + + + ++F + +E 
Sbjct: 16  LFQGFNSLKHL----KHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEP 71

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
           ++  +  MI G   N    +S+ ++  MR   +    +     L+A A L   +    +H
Sbjct: 72  NIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLH 131

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE----NLSVLNSI----------- 269
           G  V +G + +  V T L+  YGK G + +A +VFD+    N++   +I           
Sbjct: 132 GLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCR 191

Query: 270 ----------------------AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
                                 +W++M+ GYA  G     L+LF  +   GF PD Y+ +
Sbjct: 192 EAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMV 251

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            VL A    G A E   W   +  R +        T LI    + GR++ A  +   M  
Sbjct: 252 GVLCACARLG-ALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMR- 309

Query: 368 EPDAAVWRALLSFSAIHGKADMA 390
           + D  VW A +S  A+ G    A
Sbjct: 310 KKDIVVWNAAISGLAMSGHVKAA 332


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/560 (34%), Positives = 303/560 (54%), Gaps = 9/560 (1%)

Query: 22  HARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           HAR +  KS+  D   +  LIT Y     +  + RLF+ IP+ ++VSW A+I+ +  S  
Sbjct: 180 HARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGR 239

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                    R       PNQ T+ S+   C  L  +   G  + S              +
Sbjct: 240 FEEALACFTRMQEADVSPNQSTMVSVLSACGHL-RSLELGKWIGSWVRDRGFGKNLQLVN 298

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV  YS+      A+K+FD + ++DV+ +  MI G+   S   ++L +F  M   +V  
Sbjct: 299 ALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTP 358

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHA----VVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                   L A A L A++  + +H +       +G   NV + T +I  Y K G V  A
Sbjct: 359 NDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVA 418

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VF  ++   +  +WNAM++G A  G     L LF  +   GF PD+ +F+ VL+A   
Sbjct: 419 EQVF-RSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQ 477

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AG      ++   M   Y + P L+HY C+I  + R+G+ ++A+ +   M  EPD A+W 
Sbjct: 478 AGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWG 537

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           +LL+   IHG+ +    + +RL ++ P +  AYV+++N+ +G GRWD+VA++R  + D+ 
Sbjct: 538 SLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKG 597

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           ++K  G + IE+ G VH FL GD+ H ++E+I+  L E+    E  G+VP   E+L+++ 
Sbjct: 598 MKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMD 657

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           +  K  AL  HSEKLA+AFGL+S  P G T+RIVKNLR+CR+CH + K IS++  REI+ 
Sbjct: 658 EEWKEGALTQHSEKLAIAFGLISTKP-GSTIRIVKNLRVCRNCHSATKLISKIFNREIIA 716

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H F +G C+C D W
Sbjct: 717 RDRNRFHHFKDGFCSCNDRW 736



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 207/465 (44%), Gaps = 58/465 (12%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITN--------YSKSNLLSYSLRLF 56
           L   P     +  P I   + + S      ++N L            S S  LSY+L LF
Sbjct: 23  LENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLF 82

Query: 57  N--HIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           +  H   PNI  W  LI AHS +P    SL++F  ML        PN  T  SLFK+CA 
Sbjct: 83  HSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHS---GLYPNSHTFPSLFKSCAK 139

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS--------------------- 150
            S A      LH+ +LKL+LH  P   ++L+H YS+                        
Sbjct: 140 -SKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTA 198

Query: 151 ----------PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
                      D+A+++FDEI  +DVV + AMI G+ Q+ R  ++L+ F  M+ +DV   
Sbjct: 199 LITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPN 258

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
              +   L A   L ++E  + I       G  +N+ +   L+D Y K G +  AR++FD
Sbjct: 259 QSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFD 318

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
             +   + I WN M+ GY         L LF ++      P++ +FLAVL A  + G A 
Sbjct: 319 -GMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLG-AL 376

Query: 321 ESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           +  KW+     +     G    +  +T +I    + G +E AE++  +M      A W A
Sbjct: 377 DLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMG-SRSLASWNA 435

Query: 377 LLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVG 419
           ++S  A++G A+ A  + + +I+    P DD  +V V +  +  G
Sbjct: 436 MISGLAMNGHAERALGLFEEMINEGFQP-DDITFVGVLSACTQAG 479


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/540 (35%), Positives = 301/540 (55%), Gaps = 8/540 (1%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSF 95
           L+  Y+K   L Y+ R+F+ +P+ N V+W+ALI      S    +  +F +ML    L F
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ-GLCF 337

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           L +  ++AS  + CASL H    G  LH+L  K  +H     G++L+  Y++    D A 
Sbjct: 338 L-SPTSIASALRACASLDH-LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            +FDE+  +D V Y A++ G+ QN R  ++  VF  M++ +V      +   + A + LA
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 455

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A++  R  HG  ++ GL     +   LID Y K G +  +R+VF+  +   + ++WN M+
Sbjct: 456 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNM-MPSRDIVSWNTMI 514

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           AGY   G       LF  +   GF PD  +F+ +L+A  ++GL  E + W   M   Y L
Sbjct: 515 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 574

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
            P +EHY C++  + R G L++A     +MP   D  VW ALL    ++   D+  K+ +
Sbjct: 575 TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSR 634

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
            + ++ P     +V+++N+ S  GR+DE AEVR + K +  +K  G SWIE+ G +H F+
Sbjct: 635 MIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFV 694

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
            GD+ H ++ +IY +L  ++   ++LGY P    +L ++ + EK +AL  HSEKLA+A+G
Sbjct: 695 GGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYG 754

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++S     KT+ + KNLR+C DCH   K+IS V  R I+VRD NR+H F NG C+CGD W
Sbjct: 755 ILS-LSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 193/423 (45%), Gaps = 33/423 (7%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H  A+ +  QAD  +   L+  Y K   L  +  +F  +P+ ++V+W A+++ +++ 
Sbjct: 145 RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 204

Query: 78  P---------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
                     LS+ + +  LR       PN  TL +L    A    A   G S+H+  ++
Sbjct: 205 GMYHHAVAHLLSMQMQMHRLR-------PNASTLVALLPLLAQQG-ALAQGTSVHAYCIR 256

Query: 129 LSLH----------DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
             LH          D    G+AL+  Y++  S   A++VFD +  R+ V + A+I GF  
Sbjct: 257 ACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVL 316

Query: 179 NSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
            SR+  +  +F  M +  +   +   ++ ALRA A L  +     +H     SG+  ++ 
Sbjct: 317 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 376

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
            G  L+  Y KAG++  A  +FDE ++V ++++++A+++GY Q G       +F  ++  
Sbjct: 377 AGNSLLSMYAKAGLIDQAIALFDE-MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC 435

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
              PD  + ++++ A C+   A +  +      +   L         LI    + GR++ 
Sbjct: 436 NVEPDAATMVSLIPA-CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDL 494

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLS 416
           + ++   MP   D   W  +++   IHG    A+ +   + ++  P D   ++ + +  S
Sbjct: 495 SRQVFNMMPSR-DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553

Query: 417 GVG 419
             G
Sbjct: 554 HSG 556



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 177/393 (45%), Gaps = 37/393 (9%)

Query: 42  NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS-----LNIFLSMLRHPTLSFL 96
           ++  S  LS +  LF+ IPSP++ ++  LI A+S+S  +     L+++  MLRH      
Sbjct: 66  DHIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRH---RVA 122

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN  T     K C++L+     G ++H  ++   L    F  +AL+  Y +     +A  
Sbjct: 123 PNNYTFPFALKACSALADHHC-GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH 181

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-----RSSDVGSTMYCVSGALRAA 211
           +F  +  RD+V + AM+ G+A +     +++    M     R     ST+  +   L   
Sbjct: 182 IFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL---LPLL 238

Query: 212 AELAAMEQCRVIHGHAVVSGLDRN----------VIVGTGLIDGYGKAGIVSDARRVFDE 261
           A+  A+ Q   +H + + + L  N          V++GT L+D Y K G +  ARRVFD 
Sbjct: 239 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 298

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG---FAPDEY-SFLAVLTALCNAG 317
            +   N + W+A++ G+      +    LF  +  +G    +P    S L    +L +  
Sbjct: 299 -MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLR 357

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  +    + +  V   L  G      L+S   +AG ++ A  +   M  + D   + AL
Sbjct: 358 MGEQLHALLAKSGVHADLTAG----NSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSAL 412

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           +S    +G+A+ A  + K++   N   D+A ++
Sbjct: 413 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 445


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 194/544 (35%), Positives = 294/544 (54%), Gaps = 10/544 (1%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTL 93
           N L++ Y+K   L  +  +FN I    +VSW+A+I A   H     +L +F  M     +
Sbjct: 24  NGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRV 83

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS--LHDKPFCGSALVHFYSRFRSP 151
              PN  T   +F  C  +      G  +H+L++             +AL++ Y R  S 
Sbjct: 84  E--PNAMTFTGVFNACGVIED-LEQGREIHALAMASGELKSSNAILENALLNMYVRCGSL 140

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           + A+KVFD +   D   + +MI    +N  L+++L +F  M    +  T   ++  L A 
Sbjct: 141 EEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNAC 200

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A   A++  + IH     SG   +V+  T L+D Y K G +  + +VF   +   NS++W
Sbjct: 201 ACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTA-METRNSVSW 259

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            AM+A  AQ G     LELF  + + G   D  +F+ VL A  +AGL  ES ++   M  
Sbjct: 260 TAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVE 319

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y + P   HY   +  +GRAGRL+DAE +  +MPF P+   W+ LL+   IH +A+ A+
Sbjct: 320 DYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERAT 379

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           K+ + L  + P D  AY ++ NV +  GR+ +   VRK M DR ++K  G+S+IEVK KV
Sbjct: 380 KVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKV 439

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F+AGDR H   ++I  +L +L       GYVP   ++LH V + EK + +  HSEKLA
Sbjct: 440 HEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLA 499

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL++  P G  L IVKNLR+C DCH + K I++++ R IVVRD +R+H F +G C+C
Sbjct: 500 IAFGLIA-TPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSC 558

Query: 572 GDLW 575
            D W
Sbjct: 559 KDYW 562



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 141/312 (45%), Gaps = 7/312 (2%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +HS       H      + LV  Y++    D A+ +F+ I ER VV + AMI  +A 
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYAL 63

Query: 179 NSRLVDSLSVFADMRSSD-VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG--LDRN 235
           + R  ++L +F  MR+   V       +G   A   +  +EQ R IH  A+ SG     N
Sbjct: 64  HGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSN 123

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
            I+   L++ Y + G + +AR+VFD  +   ++ +W +M+    +  +    LELFH + 
Sbjct: 124 AILENALLNMYVRCGSLEEARKVFD-TMDHPDAFSWTSMITACTENCELLEALELFHRMN 182

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
           + G  P   +  +VL A   +G     ++   R+         +   T L+    + G L
Sbjct: 183 LEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDAS-GFHSSVLAQTALLDMYAKCGSL 241

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIVANV 414
           E + ++  AM    ++  W A+++  A HG+ D A ++ K + ++    D + ++ V   
Sbjct: 242 ECSSKVFTAMETR-NSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRA 300

Query: 415 LSGVGRWDEVAE 426
            S  G   E  E
Sbjct: 301 CSHAGLIKESLE 312



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           ME+ R IH    + G  R  I   GL+  Y K G + +AR +F+  L     ++W+AM+ 
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILE-RTVVSWSAMIG 59

Query: 277 GYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY-K 334
            YA  G     L LFH +   G   P+  +F  V  A C      E  + I  + +   +
Sbjct: 60  AYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNA-CGVIEDLEQGREIHALAMASGE 118

Query: 335 LEPG---LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           L+     LE+   L++   R G LE+A ++   M   PDA  W ++++
Sbjct: 119 LKSSNAILEN--ALLNMYVRCGSLEEARKVFDTMD-HPDAFSWTSMIT 163


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 203/559 (36%), Positives = 305/559 (54%), Gaps = 11/559 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSP 78
           +HAR  +   A +  +   L+  YS  N L  +  LF+ IP  N+  W  LI A++ N P
Sbjct: 80  LHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGP 139

Query: 79  --LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +++++  ML +      P+  TL  + K C++LS     G  +H   ++       F
Sbjct: 140 HETAISLYHQMLEY---GLKPDNFTLPFVLKACSALS-TIGEGRVIHERVIRSGWERDVF 195

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+ALV  Y++     +A+ VFD+I +RD V + +M+  +AQN    +SLS+  +M +  
Sbjct: 196 VGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKG 255

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V  T   +   + ++A++A +   R IHG     G   N  V T LID Y K G V  A 
Sbjct: 256 VRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVAC 315

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F E L     ++WNA++ GYA  G     L+LF  + M+   PD  +F+  L A    
Sbjct: 316 VLF-ERLREKRVVSWNAIITGYAMHGLAVEALDLFERM-MKEAQPDHITFVGALAACSRG 373

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            L  E       M    ++ P +EHYTC++  +G  G+L++A  +   M   PD+ VW A
Sbjct: 374 RLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGA 433

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+    HG  ++A    ++LI++ P D   YVI+AN+ +  G+W+ VA +R++M D+ +
Sbjct: 434 LLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGI 493

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K    SWIEVK KV+ FL+GD  H  +  IY +L  L       GYVP    + H+V +
Sbjct: 494 KKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEE 553

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK + +  HSE+LA+AFGL+S  P G  L I KNLRIC DCH + K+IS++ EREI VR
Sbjct: 554 DEKTDMVCSHSERLAIAFGLISTLP-GTRLLITKNLRICEDCHVAIKFISKITEREITVR 612

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           DVNRYH F +G C+CGD W
Sbjct: 613 DVNRYHHFRHGLCSCGDYW 631



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 150/316 (47%), Gaps = 12/316 (3%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           N    ASL ++C S + A   G  LH+   +L +       + LV+FYS   S  NA  +
Sbjct: 57  NHYYYASLLESCIS-AKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHL 115

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           FD+I + ++  +  +I  +A N     ++S++  M    +    + +   L+A + L+ +
Sbjct: 116 FDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTI 175

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
            + RVIH   + SG +R+V VG  L+D Y K G V DAR VFD+ +   +++ WN+M+A 
Sbjct: 176 GEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVD-RDAVLWNSMLAA 234

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           YAQ G     L L   +  +G  P E + + V+++  +        + I     R+  + 
Sbjct: 235 YAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGRE-IHGFGWRHGFQY 293

Query: 338 GLEHYTCLISAMGRAGRLEDA----ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
             +  T LI    + G ++ A    ER+      E     W A+++  A+HG A  A  +
Sbjct: 294 NDKVKTALIDMYAKCGSVKVACVLFERLR-----EKRVVSWNAIITGYAMHGLAVEALDL 348

Query: 394 GKRLIDINPYDDSAYV 409
            +R++     D   +V
Sbjct: 349 FERMMKEAQPDHITFV 364


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 207/637 (32%), Positives = 325/637 (51%), Gaps = 76/637 (11%)

Query: 10  QPQNTSTDPRI----------------VHARALKSSQA-DRSIYNNLITNYSKSNL--LS 50
           QP   S  PR+                VHA  +K+ Q  D +I   ++   + S+   + 
Sbjct: 7   QPNTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIG 66

Query: 51  YSLRLFNHIPSPNIVSWTALISAHSNSPL----SLNIFLSMLRHPTLSFLPNQRTLASLF 106
           Y+L +F+ +P  N  +W  +I A + +      +L +F  ML   T+   PNQ T  S+ 
Sbjct: 67  YALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVE--PNQFTFPSVL 124

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPF-----------CGS---------------- 139
           K CA ++     G  +H L LK  L D  F           CGS                
Sbjct: 125 KACAVMAR-LAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVD 183

Query: 140 --------------------ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
                                +V  Y+R  +   A+++FD + +R VV +  MI G+AQN
Sbjct: 184 DVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQN 243

Query: 180 SRLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
               +++ +F  M +  DV      +   L A + L  +E  + +H +A  + +  + ++
Sbjct: 244 GFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVL 303

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           G+ L+D Y K G +  A +VF E L   N I WNA++ G A  G  + +      +E  G
Sbjct: 304 GSALVDMYAKCGSIEKAIQVF-ERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCG 362

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
            +P + +++A+L+A  +AGL  E   +   M     L+P +EHY C++  +GRAG LE+A
Sbjct: 363 ISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEA 422

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
           E + + MP +PD  +W+ALL  S +H    +  +  + L+ + P+D  AYV ++N+ +  
Sbjct: 423 EELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASS 482

Query: 419 GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC 478
           G WD VA VR +MKD  +RK+ G SWIE+ G +H FL  D  H R +DI++ L E+  + 
Sbjct: 483 GNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKL 542

Query: 479 ERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDC 538
              G++P   ++L  + ++ K   L YHSEK+A+AFGL+S  P+   L IVKNLRIC DC
Sbjct: 543 SLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPK-TPLCIVKNLRICEDC 601

Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           H S K IS++ ER+IV+RD  R+H F +GSC+C D W
Sbjct: 602 HSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/531 (36%), Positives = 303/531 (57%), Gaps = 16/531 (3%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           R F+ IP PN V  TA+ S +  + L   SL +F +M+   + S +     L + F   A
Sbjct: 5   RAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVA-FSASA 63

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD--NAKKVFDEIRERDVVC 168
            +    +   SLH+L  K+         + ++  Y++  S D   A+KVFD + ERDVV 
Sbjct: 64  RVPDRGVTA-SLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVS 121

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC----VSGALRAAAELAAMEQCRVIH 224
           + +MI  +AQN    +++ +++ M   +VG  + C    +S  L A A   A++  + IH
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKML--NVGGGIKCNAVALSAVLLACAHAGAIQTGKHIH 179

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
              V  GL+ NV VGT ++D Y K G V  A R F   +   N ++W+AM+ GY   G  
Sbjct: 180 NQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAF-RKIKEKNILSWSAMITGYGMHGRG 238

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              LE+F  ++  G  P+  +F++VL A  +AGL  E   W   MK  + +E G+EHY C
Sbjct: 239 QEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGC 298

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  +GRAG L++A  +   M  +PDAA+W ALLS   IH   ++A    KRL +++  +
Sbjct: 299 MVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASN 358

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
              YV+++N+ +  G W +V  +R ++K RR+ K  G S  E+KGK+++F  GD+ H + 
Sbjct: 359 SGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQH 418

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
            +IY+ L +L+E  +  GYVP    +LH++ + EK  AL  HSEKLA+AF L++  PR  
Sbjct: 419 IEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPR-S 477

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + I+KNLR+C DCH + K+I+++ EREI++RD+ R+H F +G C+C D W
Sbjct: 478 VIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 10/244 (4%)

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A++ FDEI + + V   AM  G+ +N+ +  SL +F  M +SD  S +   +  +  +A
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSA 61

Query: 213 ELAAMEQCRVIHGHAVVS--GLDRNVIVGTGLIDGYGKAGI--VSDARRVFDENLSVLNS 268
                ++      HA+++  G +RN  V   ++D Y K G   +  AR+VFD      + 
Sbjct: 62  SARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER--DV 119

Query: 269 IAWNAMMAGYAQQGDQSTVLELF-HLLEM-RGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           ++WN+M+A YAQ G  +  + L+  +L +  G   +  +  AVL A  +AG A ++ K I
Sbjct: 120 VSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAG-AIQTGKHI 178

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
               VR  LE  +   T ++    + GR+E A R A     E +   W A+++   +HG+
Sbjct: 179 HNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASR-AFRKIKEKNILSWSAMITGYGMHGR 237

Query: 387 ADMA 390
              A
Sbjct: 238 GQEA 241



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTL 93
            +++  YSK   +  + R F  I   NI+SW+A+I+    H     +L IF  M R    
Sbjct: 195 TSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRS--- 251

Query: 94  SFLPNQRTLASLFKTCASLSHAFLF 118
              PN  T  S+   C   SHA L 
Sbjct: 252 GLRPNYITFISVLAAC---SHAGLL 273


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/558 (34%), Positives = 298/558 (53%), Gaps = 6/558 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+K  +  D  +  +    Y K+ L   + +LF+ IP  N+ +W A IS       
Sbjct: 80  IHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGR 139

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 + +    +   PN  T  +    C+   H  L G+ LH L L+          +
Sbjct: 140 PREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNL-GMQLHGLVLRSGFDTDVSVCN 198

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            L+ FY + +   +++ +F E+  ++ V + +++  + QN     +  ++   R   V +
Sbjct: 199 GLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVET 258

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           + + +S  L A A +A +E  R IH HAV + ++R + VG+ L+D YGK G + D+ + F
Sbjct: 259 SDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAF 318

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP--DEYSFLAVLTALCNAG 317
           DE +   N +  N+++ GYA QG     L LF  +  RG  P  +  +F+++L+A   AG
Sbjct: 319 DE-MPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 377

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
                 K  + M+  Y +EPG EHY+C++  +GRAG +E A      MP +P  +VW AL
Sbjct: 378 AVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 437

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
            +   +HGK  +     + L  ++P D   +V+++N  +  GRW E   VR+ +K   ++
Sbjct: 438 QNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIK 497

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K  G SWI VK +VH F A DR H   ++I T LA+L  E E  GY P     L+++ + 
Sbjct: 498 KGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEE 557

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           EK   + +HSEKLALAFGL+S  P    +RI KNLRIC DCH  FK++S  V+REI+VRD
Sbjct: 558 EKAAEVSHHSEKLALAFGLLS-LPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRD 616

Query: 558 VNRYHRFLNGSCTCGDLW 575
            NR+HRF +G C+C D W
Sbjct: 617 NNRFHRFKDGICSCKDYW 634



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 170/380 (44%), Gaps = 12/380 (3%)

Query: 60  PSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
           P+ N+VSWT+LIS  + +     +L  F  M R      +PN  T    FK  ASL    
Sbjct: 19  PARNVVSWTSLISGLAQNGHFSTALVEFFEMRRE---GVVPNDFTFPCAFKAVASLRLP- 74

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
           + G  +H+L++K       F G +    Y + R  D+A+K+FDEI ER++  + A I   
Sbjct: 75  VTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNS 134

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
             + R  +++  F + R  D           L A ++   +     +HG  + SG D +V
Sbjct: 135 VTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDV 194

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            V  GLID YGK   +  +  +F E +   N+++W +++A Y Q  +      L+     
Sbjct: 195 SVCNGLIDFYGKCKQIRSSEIIFTE-MGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRK 253

Query: 297 RGFAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
                 ++   +VL+A   AG+AG E  + I    V+  +E  +   + L+   G+ G +
Sbjct: 254 DIVETSDFMISSVLSAC--AGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCI 311

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
           ED+E+    MP E +     +L+   A  G+ DMA  + + +          Y+   ++L
Sbjct: 312 EDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLL 370

Query: 416 SGVGRWDEVAEVRKVMKDRR 435
           S   R   V    K+    R
Sbjct: 371 SACSRAGAVENGMKIFDSMR 390


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/548 (33%), Positives = 306/548 (55%), Gaps = 10/548 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSML 88
           D S+ N ++  YSK + +  +  LF+ +P  + VS+  +IS++S +     SL+ F  M 
Sbjct: 284 DASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM- 342

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               + F       A++    A+LS +   G  LH  +L  +       G++LV  Y++ 
Sbjct: 343 --QCMGFDRRNFPFATMLSIAANLS-SLQMGRQLHCQALLATADSILHVGNSLVDMYAKC 399

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              + A+ +F  + +R  V + A+I G+ Q       L +F  MR S++ +     +  L
Sbjct: 400 EMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVL 459

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +A+A  A++   + +H   + SG   NV  G+GL+D Y K G + DA +VF+E +   N+
Sbjct: 460 KASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEE-MPDRNA 518

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WNA+++ +A  GD    +  F  +   G  PD  S L VLTA  + G   +  ++ + 
Sbjct: 519 VSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQA 578

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M   Y + P  +HY C++  +GR GR  +AE++   MPFEPD  +W ++L+   IH    
Sbjct: 579 MSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQS 638

Query: 389 MASKMGKRLIDINPY-DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
           +A +  ++L  +    D +AYV ++N+ +  G W++V +V+K M++R ++K    SW+EV
Sbjct: 639 LAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEV 698

Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
             K+HVF + D+ H   ++I  K+ EL  E ER GY P    ++ +V ++ K E+L YHS
Sbjct: 699 NHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHS 758

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           E+LA+AF L+S  P G  + ++KNLR CRDCH + K IS++V+REI VRD +R+H F  G
Sbjct: 759 ERLAVAFALIS-TPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEG 817

Query: 568 SCTCGDLW 575
            C+CGD W
Sbjct: 818 VCSCGDYW 825



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 196/430 (45%), Gaps = 21/430 (4%)

Query: 11  PQNTSTDPRIVHARALK---SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSW 67
           PQN       VHA A+K    +    ++ N L+ +Y +   L  +  LF  IP  + V++
Sbjct: 162 PQNAVGQ---VHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTF 218

Query: 68  TALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
             LI+ +    L   S+++FL M +       P+  T + + K    L H F  G  LH+
Sbjct: 219 NTLITGYEKDGLYTESIHLFLKMRQS---GHQPSDFTFSGVLKAVVGL-HDFALGQQLHA 274

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
           LS+          G+ ++ FYS+       + +FDE+ E D V Y  +I  ++Q  +   
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           SL  F +M+        +  +  L  AA L++++  R +H  A+++  D  + VG  L+D
Sbjct: 335 SLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVD 394

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K  +  +A  +F ++L    +++W A+++GY Q+G     L+LF  +       D+ 
Sbjct: 395 MYAKCEMFEEAELIF-KSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQS 453

Query: 305 SFLAVLTALCNAG--LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           +F  VL A  +    L G   K +    +R      +   + L+    + G ++DA ++ 
Sbjct: 454 TFATVLKASASFASLLLG---KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVF 510

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI-VANVLSGVGRW 421
             MP + +A  W AL+S  A +G  + A     ++I+     DS  ++ V    S  G  
Sbjct: 511 EEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFV 569

Query: 422 DEVAEVRKVM 431
           ++  E  + M
Sbjct: 570 EQGTEYFQAM 579



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 161/348 (46%), Gaps = 10/348 (2%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRHPTL 93
           N +I+ + K+  +S +  LF+ +P   +V+WT L+   + +S+   +  +F  M R  + 
Sbjct: 83  NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF--CGSALVHFYSRFRSP 151
           + LP+  T  +L   C         G  +H+ ++KL     PF    + L+  Y   R  
Sbjct: 143 T-LPDHVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRL 200

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           D A  +F+EI E+D V +  +I G+ ++    +S+ +F  MR S    + +  SG L+A 
Sbjct: 201 DLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV 260

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
             L      + +H  +V +G  R+  VG  ++D Y K   V + R +FDE +  L+ +++
Sbjct: 261 VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDE-MPELDFVSY 319

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N +++ Y+Q       L  F  ++  GF    + F  +L+   N   + +  + +    +
Sbjct: 320 NVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLS-SLQMGRQLHCQAL 378

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
               +  L     L+    +    E+AE I  ++P +     W AL+S
Sbjct: 379 LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTALIS 425



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 201 MYCVSGALRAAAELAAMEQCRV-----------IHGHAVVSGLDRNVIVGTGLIDGYGKA 249
           +YC S  +R+   LA + Q R            +    + +G D +      +++   + 
Sbjct: 3   LYCNSNEVRSRT-LATLRQLRQPSPATFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRR 61

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           G VS AR+V+DE +   N+++ N M++G+ + GD S+  +LF  +  R
Sbjct: 62  GQVSAARKVYDE-MPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDR 108


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 191/496 (38%), Positives = 276/496 (55%), Gaps = 6/496 (1%)

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           SL IF  M +    S LP+  T  ++ K  A L    + G  +H + +++      +  +
Sbjct: 73  SLYIFALMHK---FSILPDSSTFPAVLKATAQLCDTGV-GKMIHGIVIQMGFICDVYTST 128

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALVH Y    S  +A ++FDE+ ER+ V + A+I G+  N + V ++  F  M +     
Sbjct: 129 ALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQP 188

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           +   V   L A + L A  Q + IH     + L  NV VGT LID Y K G V +  +VF
Sbjct: 189 SERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVF 248

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +E +   N   WN +++GYA  G     L+ F  + M  F PDE +FL VL A C+ GL 
Sbjct: 249 EE-IREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLV 307

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E       MK ++ L+P +EHY C++  +GRAG LE+A  +  +M  EPD  +WRALL 
Sbjct: 308 TEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLC 367

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +HG   +   + KRLI++ P +   YV+++N+ S   RW EV ++R +M  R +RK 
Sbjct: 368 ACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKV 427

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S IE+   V+ F+A +      E IY +L  L+++ +  GYV   D  L+++   EK
Sbjct: 428 PGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEK 487

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             ++ YHSEKLALAFGL++ +P   TLRIVKNLRIC DCHE FK +S V +R IVVRD N
Sbjct: 488 EHSVMYHSEKLALAFGLLN-SPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRN 546

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F  G C+C D W
Sbjct: 547 RFHHFYEGFCSCRDYW 562



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 132/307 (42%), Gaps = 21/307 (6%)

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ++   +S++R   N+++              +MI  +   ++ ++SL +FA M    +  
Sbjct: 40  SIARIFSKYRGSINSQQC------------NSMIRTYLDLNKHLNSLYIFALMHKFSILP 87

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                   L+A A+L      ++IHG  +  G   +V   T L+  Y     +SDA ++F
Sbjct: 88  DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLF 147

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           DE +   N++ WNA++ GY         ++ F  +   G  P E + + VL+A  + G A
Sbjct: 148 DE-MPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLG-A 205

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
               KWI       +L   +   T LI    + G + + E++   +  E +   W  L+S
Sbjct: 206 FNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLIS 264

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAY---VIVANVLSGV---GRWDEVAEVRKVMKD 433
             A++G+ D A +   R++  N   D      V+ A    G+   GRW  ++  ++    
Sbjct: 265 GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQ 324

Query: 434 RRVRKEG 440
            R+   G
Sbjct: 325 PRIEHYG 331



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 111/249 (44%), Gaps = 8/249 (3%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSF 95
           L+  Y     +S + +LF+ +P  N V+W ALI+ ++++     +++ F  ML       
Sbjct: 130 LVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGA--- 186

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P++RT+  +   C+ L  AF  G  +H       L    F G+AL+  Y++  +    +
Sbjct: 187 QPSERTVVVVLSACSHLG-AFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVE 245

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           KVF+EIRE++V  +  +I G+A N +   +L  F+ M   +         G L A     
Sbjct: 246 KVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQG 305

Query: 216 AMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            + + R          GL   +     ++D  G+AG++ +A  +        + I W A+
Sbjct: 306 LVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRAL 365

Query: 275 MAGYAQQGD 283
           +      G+
Sbjct: 366 LCACRVHGN 374


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 201/617 (32%), Positives = 330/617 (53%), Gaps = 57/617 (9%)

Query: 11  PQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSW 67
           P  T  D + +HA+ +K++Q    +    +  +S  +    L Y+ ++F  +  PN  S+
Sbjct: 20  PCKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSY 79

Query: 68  TALISA--HSNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
             LI A   SN P  +L +F+ M+     S  PN  T  S+FK C   +     G  +H 
Sbjct: 80  NTLIRALSESNDPCDALLVFIEMVE--DCSVEPNCFTFPSVFKACGR-AERLREGRQVHG 136

Query: 125 LSLKLSLHDKPF-----------CG----------------------------------- 138
           L++K  L    F           CG                                   
Sbjct: 137 LAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLW 196

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           + ++  Y R    + A+ +FDE+ +R VV +  MI G+AQ+    +++ VF +M+ ++V 
Sbjct: 197 NVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVP 256

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                +   L A + L A+E  + +H +AV + +  + ++G+ LID Y K G +  A +V
Sbjct: 257 PNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQV 316

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E L   N + W+ ++AG A  G     L+ F  +E  G  P + +++ +L+A  +AGL
Sbjct: 317 F-EGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGL 375

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E   + + M     LEP +EHY C++  +GRAG LE++E + + MP +PD  +W+ALL
Sbjct: 376 VNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALL 435

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               +HG  +M  ++ + L+++ P+D  +YV ++N+ + +G W+ VA+VR +MK+  VRK
Sbjct: 436 GACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRK 495

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
           + G SWIE+ G +H FL  D  H +++ I++ L E+      +GY P   ++L N+ + +
Sbjct: 496 DPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEED 555

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K  +L YHSEK+A+AFGL+S  P+   LRI KNLRIC DCH S K IS++ +R+I+VRD 
Sbjct: 556 KESSLNYHSEKIAIAFGLISTQPQ-TPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDR 614

Query: 559 NRYHRFLNGSCTCGDLW 575
            R+H F+NGSC+C D W
Sbjct: 615 KRFHHFVNGSCSCMDYW 631


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/558 (34%), Positives = 298/558 (53%), Gaps = 6/558 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+K  +  D  +  +    Y K+ L   + +LF+ IP  N+ +W A IS       
Sbjct: 130 IHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGR 189

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 + +    +   PN  T  +    C+   H  L G+ LH L L+          +
Sbjct: 190 PREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNL-GMQLHGLVLRSGFDTDVSVCN 248

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            L+ FY + +   +++ +F E+  ++ V + +++  + QN     +  ++   R   V +
Sbjct: 249 GLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVET 308

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           + + +S  L A A +A +E  R IH HAV + ++R + VG+ L+D YGK G + D+ + F
Sbjct: 309 SDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAF 368

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP--DEYSFLAVLTALCNAG 317
           DE +   N +  N+++ GYA QG     L LF  +  RG  P  +  +F+++L+A   AG
Sbjct: 369 DE-MPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 427

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
                 K  + M+  Y +EPG EHY+C++  +GRAG +E A      MP +P  +VW AL
Sbjct: 428 AVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 487

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
            +   +HGK  +     + L  ++P D   +V+++N  +  GRW E   VR+ +K   ++
Sbjct: 488 QNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIK 547

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K  G SWI VK +VH F A DR H   ++I T LA+L  E E  GY P     L+++ + 
Sbjct: 548 KGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEE 607

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           EK   + +HSEKLALAFGL+S  P    +RI KNLRIC DCH  FK++S  V+REI+VRD
Sbjct: 608 EKAAEVSHHSEKLALAFGLLS-LPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRD 666

Query: 558 VNRYHRFLNGSCTCGDLW 575
            NR+HRF +G C+C D W
Sbjct: 667 NNRFHRFKDGICSCKDYW 684



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 190/423 (44%), Gaps = 14/423 (3%)

Query: 19  RIVHARALKS--SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+VHAR +K+  S     + N LI  YSK +    +  +    P+ N+VSWT+LIS  + 
Sbjct: 26  RVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQ 85

Query: 77  S---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +     +L  F  M R      +PN  T    FK  ASL    + G  +H+L++K     
Sbjct: 86  NGHFSTALVEFFEMRRE---GVVPNDFTFPCAFKAVASLRLP-VTGKQIHALAVKCGRIL 141

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F G +    Y + R  D+A+K+FDEI ER++  + A I     + R  +++  F + R
Sbjct: 142 DVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFR 201

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             D           L A ++   +     +HG  + SG D +V V  GLID YGK   + 
Sbjct: 202 RIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIR 261

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            +  +F E +   N+++W +++A Y Q  +      L+           ++   +VL+A 
Sbjct: 262 SSEIIFTE-MGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSAC 320

Query: 314 CNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             AG+AG E  + I    V+  +E  +   + L+   G+ G +ED+E+    MP E +  
Sbjct: 321 --AGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLV 377

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
              +L+   A  G+ DMA  + + +          Y+   ++LS   R   V    K+  
Sbjct: 378 TRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFD 437

Query: 433 DRR 435
             R
Sbjct: 438 SMR 440


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 194/578 (33%), Positives = 309/578 (53%), Gaps = 22/578 (3%)

Query: 2   ALDLNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60
           ALDL +Q            +H + +K+  Q +  + + LI  Y+K   L  +  +   + 
Sbjct: 430 ALDLGEQ------------IHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT 477

Query: 61  SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
             ++VSWTALIS ++   L   +L  F  ML     S   +    +S    CA +  A  
Sbjct: 478 EDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQS---DNIGFSSAISACAGI-QALN 533

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G  +H+ S      +    G+ALV  Y+R      A   F++I  +D + +  +I GFA
Sbjct: 534 QGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFA 593

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           Q+    D+L VFA M  + + ++ +    A+ AAA +A ++Q + IH   +  G D ++ 
Sbjct: 594 QSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIE 653

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           V   LI  Y K G + DARR F E +   N ++WNAM+ GY+Q G  +  + LF  ++  
Sbjct: 654 VSNALITFYAKCGSIEDARREFCE-MPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQV 712

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  P+  +F+ VL+A  + GL  +   + E M   + L P   HY C++  + RAG L  
Sbjct: 713 GEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSR 772

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           A +    MP EPDA +WR LLS   +H   ++     + L+++ P D + YV+++N+ + 
Sbjct: 773 ARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAV 832

Query: 418 VGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEE 477
            G+WD   + R++M++R V+KE GRSWIEVK  VH F  GDR+H   + IY  LAEL ++
Sbjct: 833 SGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKK 892

Query: 478 CERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRD 537
              +GY      +L++V   +K   ++ HSEKLA+ FGL+S +     + ++KNLR+C+D
Sbjct: 893 AAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDT-VPIHVMKNLRVCKD 951

Query: 538 CHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           CH   K++S++  R I+VRD  R+H F  G C+C D W
Sbjct: 952 CHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 172/368 (46%), Gaps = 10/368 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           I N LI  Y+K+ L+  + ++F+++ + + VSW A+IS  S +     ++++F  M    
Sbjct: 149 ISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEM---H 205

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
           T    P     +S+   C  +   F  G  LH+L  K     + +  +ALV  YSR  + 
Sbjct: 206 TAGIFPTPYVFSSVLSGCTKIK-LFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNF 264

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
            +A+KVF +++ +D V + ++I G AQ      +L +F  M+   +      V+  L A 
Sbjct: 265 VSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSAC 324

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A   A+ +   +H + + +G+  ++IV   L+D Y     +  A  +F       N + W
Sbjct: 325 ASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMF-LTAQTENVVLW 383

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N M+  + +  + S    +F  ++++G  P+++++ ++L    + G     E+ I    +
Sbjct: 384 NVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQ-IHTQVI 442

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           +   +  +   + LI    + G+L+ A  I   +  E D   W AL+S  A H     A 
Sbjct: 443 KTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALISGYAQHNLFAEAL 501

Query: 392 KMGKRLID 399
           K  K +++
Sbjct: 502 KHFKEMLN 509



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 142/308 (46%), Gaps = 8/308 (2%)

Query: 21  VHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H + LK    + S+  N L+  Y     L   +++F  +P+ ++ SW  +IS      +
Sbjct: 32  LHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKM 91

Query: 80  S---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           S   L++F  M+     +  P + + AS+ + C+       +   +H+  +   L   P 
Sbjct: 92  SNRVLDLFSCMIEE---NVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPI 148

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             + L+  Y++     +A+KVFD +  +D V + AMI GF+QN    +++ +F +M ++ 
Sbjct: 149 ISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAG 208

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +  T Y  S  L    ++   +    +H      G      V   L+  Y +      A 
Sbjct: 209 IFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAE 268

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VF + +   + +++N++++G AQQG     LELF  ++     PD  +  ++L+A  + 
Sbjct: 269 KVFSK-MQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASN 327

Query: 317 GLAGESEK 324
           G   + E+
Sbjct: 328 GALCKGEQ 335



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE--NLSVLNSIAWN 272
            ++ +C+ +HG  +  G     ++   L+D Y   G +    +VF++  N SV    +W+
Sbjct: 24  GSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVR---SWD 80

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +++G+ ++   + VL+LF  +     +P E SF +VL A
Sbjct: 81  KIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 191/496 (38%), Positives = 276/496 (55%), Gaps = 6/496 (1%)

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           SL IF  M +    S LP+  T  ++ K  A L    + G  +H + +++      +  +
Sbjct: 73  SLYIFALMHK---FSILPDSSTFPAVLKATAQLCDTGV-GKMIHGIVIQMGFICDVYTST 128

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALVH Y    S  +A ++FDE+ ER+ V + A+I G+  N + V ++  F  M +     
Sbjct: 129 ALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQP 188

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           +   V   L A + L A  Q + IH     + L  NV VGT LID Y K G V +  +VF
Sbjct: 189 SERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVF 248

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +E +   N   WN +++GYA  G     L+ F  + M  F PDE +FL VL A C+ GL 
Sbjct: 249 EE-IREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLV 307

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E       MK ++ L+P +EHY C++  +GRAG LE+A  +  +M  EPD  +WRALL 
Sbjct: 308 TEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLC 367

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +HG   +   + KRLI++ P +   YV+++N+ S   RW EV ++R +M  R +RK 
Sbjct: 368 ACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKV 427

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S IE+   V+ F+A +      E IY +L  L+++ +  GYV   D  L+++   EK
Sbjct: 428 PGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEK 487

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             ++ YHSEKLALAFGL++ +P   TLRIVKNLRIC DCHE FK +S V +R IVVRD N
Sbjct: 488 EHSVMYHSEKLALAFGLLN-SPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRN 546

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F  G C+C D W
Sbjct: 547 RFHHFYEGFCSCRDYW 562



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 132/307 (42%), Gaps = 21/307 (6%)

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ++   +S++R   N+++              +MI  +   ++ ++SL +FA M    +  
Sbjct: 40  SIARIFSKYRGSINSQQC------------NSMIRTYLDLNKHLNSLYIFALMHKFSILP 87

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                   L+A A+L      ++IHG  +  G   +V   T L+  Y     +SDA ++F
Sbjct: 88  DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLF 147

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           DE +   N++ WNA++ GY         ++ F  +   G  P E + + VL+A  + G A
Sbjct: 148 DE-MPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLG-A 205

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
               KWI       +L   +   T LI    + G + + E++   +  E +   W  L+S
Sbjct: 206 FNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLIS 264

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAY---VIVANVLSGV---GRWDEVAEVRKVMKD 433
             A++G+ D A +   R++  N   D      V+ A    G+   GRW  ++  ++    
Sbjct: 265 GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQ 324

Query: 434 RRVRKEG 440
            R+   G
Sbjct: 325 PRIEHYG 331



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 111/249 (44%), Gaps = 8/249 (3%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSF 95
           L+  Y     +S + +LF+ +P  N V+W ALI+ ++++     +++ F  ML       
Sbjct: 130 LVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGA--- 186

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P++RT+  +   C+ L  AF  G  +H       L    F G+AL+  Y++  +    +
Sbjct: 187 QPSERTVVVVLSACSHLG-AFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVE 245

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           KVF+EIRE++V  +  +I G+A N +   +L  F+ M   +         G L A     
Sbjct: 246 KVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQG 305

Query: 216 AMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            + + R          GL   +     ++D  G+AG++ +A  +        + I W A+
Sbjct: 306 LVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRAL 365

Query: 275 MAGYAQQGD 283
           +      G+
Sbjct: 366 LCACRVHGN 374


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/549 (33%), Positives = 308/549 (56%), Gaps = 10/549 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP-----LSLNIFLS 86
           D  +  +L+  Y+K  L+  + ++F+ +   N++SWTAL++ +          ++ +F +
Sbjct: 296 DLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSN 355

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           ML    ++  PN  T + + K CASL   F FG  +H  ++KL L      G+ LV  Y+
Sbjct: 356 MLLQGGVA--PNCFTFSGVLKACASLPD-FDFGEQVHGQTIKLGLSAIDCVGNGLVSVYA 412

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +    ++A+K FD + E+++V    +     ++  L     +  ++     G + +  + 
Sbjct: 413 KSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYAS 472

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L  AA +  + +   IH   V  G   ++ V   LI  Y K G    A +VF++ +   
Sbjct: 473 LLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFND-MEDC 531

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N I W +++ G+A+ G  S  LELF+ +   G  P++ +++AVL+A  + GL  E+ K  
Sbjct: 532 NVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHF 591

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             M+  + + P +EHY C++  +GR+G L +A     +MPF+ DA VWR  L    +H  
Sbjct: 592 TSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRN 651

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
             +     K +++  P+D + Y++++N+ +  GRW++VA +RK MK +++ KE G SWIE
Sbjct: 652 TKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIE 711

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           V+ +VH F  GD +H + + IY KL EL  + + +GYVP  D +LH+V D +K + L+ H
Sbjct: 712 VENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQH 771

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+AF L+S  P  K +R+ KNLR+C DCH + KYIS V  REIVVRD NR+H   +
Sbjct: 772 SEKLAVAFALIS-TPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKD 830

Query: 567 GSCTCGDLW 575
           G+C+C D W
Sbjct: 831 GTCSCNDYW 839



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 182/376 (48%), Gaps = 26/376 (6%)

Query: 2   ALDLNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS 61
           +L L Q  + +NT     + H     +   D  + N+LIT YSKSN    +  +F  + +
Sbjct: 56  SLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMEN 115

Query: 62  P--NIVSWTALISAHSNSPLSLN---IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
              ++VS++++IS  +N+   L    +F  +L    +   PN+    ++ + C      F
Sbjct: 116 SKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGV--YPNEYCFTAVIRACLK-GGFF 172

Query: 117 LFGLSLHSLSLKLSLHDKPFC-GSALVHFYSR---FRSPDNAKKVFDEIRERDVVCYGAM 172
             GL L    LK    D   C G  L+  + +       ++A+KVFD++RE++VV +  M
Sbjct: 173 KTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLM 232

Query: 173 IVGFAQNSRLVDSLSVFADMR-SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           I   AQ     +++ +F +M  SS      + ++G +   AE+  +   + +H   + SG
Sbjct: 233 ITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSG 292

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD--QSTVLE 289
           L  ++ VG  L+D Y K G+V +AR+VFD  +   N ++W A++ GY + G   +   + 
Sbjct: 293 LVLDLCVGCSLVDMYAKCGLVQEARKVFD-GMREHNVMSWTALVNGYVRGGGGYEREAMR 351

Query: 290 LF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC---- 344
           +F ++L   G AP+ ++F  VL A C +    +  + +    ++     GL    C    
Sbjct: 352 MFSNMLLQGGVAPNCFTFSGVLKA-CASLPDFDFGEQVHGQTIKL----GLSAIDCVGNG 406

Query: 345 LISAMGRAGRLEDAER 360
           L+S   ++GR+E A +
Sbjct: 407 LVSVYAKSGRMESARK 422


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 204/573 (35%), Positives = 317/573 (55%), Gaps = 33/573 (5%)

Query: 9   PQPQNTSTDPRI--VHARA-LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV 65
           P    ++T P++  +HA+  L +  ++  +   LI++      L Y+L +F     PN+ 
Sbjct: 45  PLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLF 104

Query: 66  SWTALI---SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
            + ALI   + +S    S++ F+ MLR   LS  P++ TL  + K+ A+L    L G  L
Sbjct: 105 VFNALIRGLAENSRFEGSVSHFVLMLR---LSIRPDRLTLPFVLKSVAALVDVGL-GRCL 160

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           H   +KL L    F   +LV  Y +        ++FDE  +R+                 
Sbjct: 161 HGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKA--------------- 205

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
            +S+ ++  +R +D+      V  AL A  ++ A++    IH +   +G   N  +GT L
Sbjct: 206 -ESILLWNGVRPNDL-----TVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTAL 259

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           +D Y K G +  A RVF E     + + W+ M+ G+A  G     L+ F  ++  G  PD
Sbjct: 260 VDMYAKCGNIKSASRVFVETKGK-DLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPD 318

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           E  FLA+LTA  ++G   +   + E M++ Y +EP ++HYT ++  +GRAGRL++A    
Sbjct: 319 EVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFI 378

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
            +MP  PD  +W AL      H   +MA    ++L+ + P    +YV ++NV + VGRW+
Sbjct: 379 QSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWE 438

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
           +V  VR +MK+R V K+ G S+IEV+G+VH F+AGD  H R E+I  KL E+    ++ G
Sbjct: 439 DVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEG 498

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           Y+P    +LHN+ + EK +AL  HSEKLALAFGL+S AP G T+RIVKNLR+C DCH   
Sbjct: 499 YMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAP-GSTIRIVKNLRVCGDCHSMM 557

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           KY S++  REI++RD+ R+H F +G+C+CGD W
Sbjct: 558 KYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 195/569 (34%), Positives = 314/569 (55%), Gaps = 21/569 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS----- 72
           +++H  A+K     D  +   L+  Y+K   L  + ++F  +P PN+V + A+I+     
Sbjct: 243 KMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQM 302

Query: 73  ---AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
              A   +  ++ +F  M    +    P++ T +S+ K C+++  AF  G  +H+   K 
Sbjct: 303 ETMADEFANEAMYLFFEM---QSRGMKPSEFTFSSILKACSTI-EAFECGKQIHAQIFKY 358

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
           +L    F G+ALV  YS   S ++  K F    + DVV + ++IVG  QN +    L++F
Sbjct: 359 NLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLF 418

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            ++  S      + +S  L A A LAA++    IH +A+ +G+    I+    I  Y K 
Sbjct: 419 HELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKC 478

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  A   F E  +  + ++W+ M++  AQ G     ++LF L++  G AP+  +FL V
Sbjct: 479 GDIDSANMTFKETKNP-DIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGV 537

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  + GL  E  ++ E MK  + + P ++H  C++  +GRAGRL +AE   M   FE 
Sbjct: 538 LVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEG 597

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           D  +WR+LLS   +H   D   ++ +R+I++ P   ++YV++ N+ +  G      E+R 
Sbjct: 598 DPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRN 657

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
           +MKDR V+KE G SWIEV   VH F+AGDR H  ++ IY +L E++EE ++L Y+   DE
Sbjct: 658 LMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI---DE 714

Query: 490 MLHNVGDREKRE---ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
            L +     K +    + YHSEKLA+ FG++S  PR   +R++KNLR C  CHE+ K  S
Sbjct: 715 KLVSDASEPKHKDNSMVSYHSEKLAVTFGIIS-LPRSAPVRVMKNLRSCWHCHETMKLFS 773

Query: 547 RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           R+  REI++RD  R+HRF +GSC+CGD W
Sbjct: 774 RLENREIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 175/387 (45%), Gaps = 26/387 (6%)

Query: 19  RIVHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           R++HA    S      +  N+LI  Y K   + ++  +F      + VSW +LI+ +   
Sbjct: 140 RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 199

Query: 75  -SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS-LSHAFLFGLSLHSLSLKLSLH 132
            SN  + L + + MLRH       N   L S  K C S  S +   G  LH  ++KL L 
Sbjct: 200 GSNDEM-LRLLVKMLRH---GLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLD 255

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS----- 187
                G+AL+  Y++    ++A K+F  + + +VV Y AMI GF Q   + D  +     
Sbjct: 256 LDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMY 315

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           +F +M+S  +  + +  S  L+A + + A E  + IH       L  +  +G  L++ Y 
Sbjct: 316 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 375

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
            +G + D  + F  +   L+ ++W +++ G+ Q G     L LFH L   G  PDE++  
Sbjct: 376 LSGSIEDGLKCF-HSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTIS 434

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL----ISAMGRAGRLEDAERIAM 363
            +L+A  N       E+        Y ++ G+ ++T +    I    + G + D+  +  
Sbjct: 435 IMLSACANLAAVKSGEQIHA-----YAIKTGIGNFTIIQNSQICMYAKCGDI-DSANMTF 488

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMA 390
                PD   W  ++S +A HG A  A
Sbjct: 489 KETKNPDIVSWSVMISSNAQHGCAKEA 515



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 169/352 (48%), Gaps = 13/352 (3%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           + NNL+  Y K      + +LF+ +P  N+VSW +LIS ++       + +++ +   +S
Sbjct: 56  LLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEV-MNLFKEARMS 114

Query: 95  FLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            L  ++ T ++    C   +     G  +H+L     L       ++L+  Y +    D 
Sbjct: 115 DLRLDKFTFSNALSVCGR-TLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDW 173

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+ VF+   E D V + ++I G+ +     + L +   M    +    Y +  AL+A   
Sbjct: 174 ARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGS 233

Query: 214 --LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
              +++E  +++HG AV  GLD +V+VGT L+D Y K G + DA ++F + +   N + +
Sbjct: 234 NFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIF-KLMPDPNVVMY 292

Query: 272 NAMMAGYAQ---QGDQ--STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           NAM+AG+ Q     D+  +  + LF  ++ RG  P E++F ++L A C+   A E  K I
Sbjct: 293 NAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKA-CSTIEAFECGKQI 351

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
                +Y L+        L+     +G +ED  +   + P + D   W +L+
Sbjct: 352 HAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTP-KLDVVSWTSLI 402



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 5/292 (1%)

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
            P    LP      +    C++ + + + G   H   +K       F  + L++ Y +  
Sbjct: 9   QPYYLGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCG 68

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
             D AKK+FD + +R+VV + ++I G+ Q     + +++F + R SD+    +  S AL 
Sbjct: 69  ETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALS 128

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
                  +   R+IH    VSGL   V++   LID Y K G +  AR VF E+   L+S+
Sbjct: 129 VCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVF-ESADELDSV 187

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG--ESEKWIE 327
           +WN+++AGY + G    +L L   +   G   + Y+  + L A C +  +   E  K + 
Sbjct: 188 SWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKA-CGSNFSSSIECGKMLH 246

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
              V+  L+  +   T L+    + G LEDA +I   MP +P+  ++ A+++
Sbjct: 247 GCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIA 297


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 315/574 (54%), Gaps = 42/574 (7%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPLSLNI-FLSMLRHPTLSFL 96
           L+T      L SY   LF+ + +PN  +WTALI A++   PLS  + F S +R   +S  
Sbjct: 49  LVTALPHVPLHSYPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVS-- 106

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LHDKPFCGSALVHFYSRFRSPDNAK 155
           P   T ++LF  CA++ H+ L G  LH+ +L L       +  +A++  Y +  S   A+
Sbjct: 107 PISFTFSALFSACAAVRHSAL-GAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCAR 165

Query: 156 KVFDEIRERDV-------------------------------VCYGAMIVGFAQNSRLVD 184
            VFDE+ ERDV                               V + AM+ G+AQN+  +D
Sbjct: 166 MVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMD 225

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG--LDRNVIVGTGL 242
           +L VF  +R   V      + G + A A+L A +    I   A  SG  +  NV+VG+ L
Sbjct: 226 ALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSAL 285

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           ID Y K G V +A  VF + +   N  ++++M+ G+A  G     ++LF+ +   G  P+
Sbjct: 286 IDMYSKCGNVEEAYDVF-KGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPN 344

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
             +F+ VLTA  +AGL  + ++    M+  Y + P  E Y C+   + RAG LE A ++ 
Sbjct: 345 HVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLV 404

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             MP E D AVW ALL  S +HG  D+A    KRL ++ P +   Y++++N  +  GRWD
Sbjct: 405 ETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWD 464

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVK-GKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
           +V++VRK+++++ ++K  G SW+E K G +H F+AGD  H +  +I  +L +L+E  + +
Sbjct: 465 DVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGI 524

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           GY P    + + + DREKR  L  HSEKLALAFGL+S    G T++I+KNLRIC DCH  
Sbjct: 525 GYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLS-TDVGSTIKIMKNLRICEDCHIV 583

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
               S+V  R+IVVRD  R+H FLNG+C+C + W
Sbjct: 584 MCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 13/211 (6%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           AR +     +R +  +  LI  Y++   +  +  LF+ +P  ++V+WTA+++ ++ + + 
Sbjct: 164 ARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMP 223

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASL-SHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           ++      R        ++ TL  +   CA L +  +   +   + S    + D    GS
Sbjct: 224 MDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGS 283

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+  YS+  + + A  VF  +RER+V  Y +MIVGFA + R   ++ +F DM  + V  
Sbjct: 284 ALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKP 343

Query: 200 TMYCVSGALRAAAE----------LAAMEQC 220
                 G L A +            A+ME+C
Sbjct: 344 NHVTFVGVLTACSHAGLVDQGQQLFASMEKC 374


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 198/562 (35%), Positives = 310/562 (55%), Gaps = 11/562 (1%)

Query: 19  RIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH+ A K   A+   +   LI+ YSK   +  +  LF+ +  P++V++ ALIS +S +
Sbjct: 232 RCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVN 291

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +   S+N+F  ++   TL   PN  TL +L    +   H  L    LH   LK      
Sbjct: 292 GMVGSSVNLFTELM---TLGLWPNSSTLVALIPVHSPFGHDLL-AQCLHGFVLKSGFTAN 347

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +A+   + R    ++A+K FD + E+ +  + AMI G+AQN     ++++F  M  
Sbjct: 348 SPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVK 407

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            +V      +S  L A A+L A+   + +H       L+ NV V T LID Y K G +S+
Sbjct: 408 LNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISE 467

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           ARR+F+  +   N ++WNAM+AGY   G  +  L+L+  +      P   +FL+VL A  
Sbjct: 468 ARRIFN-TMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACS 526

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP-DAAV 373
           + GL  E  K    M   Y + PG+EH TC++  +GRAG+L++A  +    P       V
Sbjct: 527 HGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGV 586

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL    +H  +D+A    ++L +++P +   YV+++N+ +   ++ E A VR+  K 
Sbjct: 587 WGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKS 646

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R++ K  G + IE+  K HVF+AGDR H ++E IY+ L +L  +    GY P  +  L++
Sbjct: 647 RKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYD 706

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + EK   +  HSEKLA+AFGL+S  P G  +RI+KNLR+C DCH + K+IS+V +R I
Sbjct: 707 VEEEEKEHMVKVHSEKLAIAFGLLSTEP-GTEIRIIKNLRVCLDCHNATKFISKVTQRLI 765

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           VVRD +R+H F +G C+CGD W
Sbjct: 766 VVRDASRFHHFRDGVCSCGDYW 787



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 178/381 (46%), Gaps = 8/381 (2%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
           ++F+ +PSP+ V W  L++  S S  ++  F  M+   ++   P+  TLAS+    A ++
Sbjct: 170 KVFDTVPSPDTVLWNTLLAGLSGSE-AVESFARMVCDGSVR--PDATTLASVLPAAAEVA 226

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
              + G  +HS + K  L +     + L+  YS+    ++A+ +FD + + D+V Y A+I
Sbjct: 227 DVTM-GRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALI 285

Query: 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
            G++ N  +  S+++F ++ +  +      +   +   +        + +HG  + SG  
Sbjct: 286 SGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFT 345

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
            N  V T +   + +   +  AR+ FD  +      +WNAM++GYAQ G     + LF  
Sbjct: 346 ANSPVSTAITTLHCRLNDMESARKAFD-TMPEKTMESWNAMISGYAQNGLTEMAVALFEQ 404

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           +      P+  +  + L+A    G A    KW+ R+     LEP +   T LI    + G
Sbjct: 405 MVKLNVRPNPITISSTLSACAQLG-ALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCG 463

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA-YVIVA 412
            + +A RI   M    +   W A+++   +HG+   A K+ K ++D +    SA ++ V 
Sbjct: 464 SISEARRIFNTMD-NKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVL 522

Query: 413 NVLSGVGRWDEVAEVRKVMKD 433
              S  G  +E  +V + M D
Sbjct: 523 YACSHGGLVEEGWKVFRSMTD 543


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 199/544 (36%), Positives = 313/544 (57%), Gaps = 10/544 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           + NNLI  YSKS L   S R F   P  +  +W+++IS  + + L   SL     M+   
Sbjct: 52  VANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMM--- 108

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
             +  P+   L S  K+CA LS   + G S+H LS+K       F GS+LV  Y++    
Sbjct: 109 AGNLRPDDHVLPSATKSCAILSRCDI-GRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEI 167

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A+K+FDE+ +R+VV +  M+ G+AQ     ++L +F +    ++    Y  S  +   
Sbjct: 168 VYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVC 227

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A    +E  R IHG ++ S  D +  VG+ L+  Y K G+   A +VF+E + V N   W
Sbjct: 228 ANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNE-VPVKNLGIW 286

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NAM+  YAQ      V+ELF  +++ G  P+  +FL VL A  +AGL  E   + ++MK 
Sbjct: 287 NAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMK- 345

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
             ++EP  +HY  L+  +GRAGRL++A  +   MP +P  +VW ALL+   +H   ++A+
Sbjct: 346 ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAA 405

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
               ++ ++ P     ++ ++N  +  GR+++ A+ RK+++DR  +KE G SW+E + KV
Sbjct: 406 FAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKV 465

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F AG+R HE++++IY KLAEL EE E+ GY+     +L  V   EK + + YHSE+LA
Sbjct: 466 HTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLA 525

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL++  P  + +R++KNLR+C DCH + K++S    R I+VRD NR+HRF +G C+C
Sbjct: 526 IAFGLIT-FPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSC 584

Query: 572 GDLW 575
            D W
Sbjct: 585 NDYW 588



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 155/320 (48%), Gaps = 6/320 (1%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           GL LH   +K  L   P   + L++FYS+ + P ++++ F++  ++    + ++I  FAQ
Sbjct: 34  GLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQ 93

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N     SL     M + ++    + +  A ++ A L+  +  R +H  ++ +G D +V V
Sbjct: 94  NELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFV 153

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           G+ L+D Y K G +  AR++FDE +   N + W+ MM GYAQ G+    L LF       
Sbjct: 154 GSSLVDMYAKCGEIVYARKMFDE-MPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFEN 212

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
            A ++YSF +V++   N+ L  E  + I  + ++   +      + L+S   + G  E A
Sbjct: 213 LAVNDYSFSSVISVCANSTLL-ELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGA 271

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR--LIDINPYDDSAYVIVANVLS 416
            ++   +P + +  +W A+L   A H       ++ KR  L  + P +   ++ V N  S
Sbjct: 272 YQVFNEVPVK-NLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKP-NFITFLNVLNACS 329

Query: 417 GVGRWDEVAEVRKVMKDRRV 436
             G  DE       MK+ R+
Sbjct: 330 HAGLVDEGRYYFDQMKESRI 349



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 122/262 (46%), Gaps = 8/262 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN- 76
           R VH  ++K+   AD  + ++L+  Y+K   + Y+ ++F+ +P  N+V+W+ ++  ++  
Sbjct: 136 RSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQM 195

Query: 77  --SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             +  +L +F   L     +   N  + +S+   CA+ S     G  +H LS+K S    
Sbjct: 196 GENEEALWLFKEALFE---NLAVNDYSFSSVISVCAN-STLLELGRQIHGLSIKSSFDSS 251

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F GS+LV  YS+   P+ A +VF+E+  +++  + AM+  +AQ+S     + +F  M+ 
Sbjct: 252 SFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKL 311

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           S +          L A +    +++ R        S ++        L+D  G+AG + +
Sbjct: 312 SGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQE 371

Query: 255 ARRVFDENLSVLNSIAWNAMMA 276
           A  V            W A++ 
Sbjct: 372 ALEVITNMPIDPTESVWGALLT 393


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 203/563 (36%), Positives = 311/563 (55%), Gaps = 11/563 (1%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHS- 75
           R +HAR L S    D  +   L+  Y+   L+S + RLF+ +P+  N+  W  LI A++ 
Sbjct: 83  RQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYAR 142

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           + P    I L        S  P+  T   + K CA+L      G  +H   ++ S     
Sbjct: 143 DGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLD-LGAGREVHDRVMRTSWAADV 201

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  + L+  Y++    D A  VFD    RD V + +MI    QN R  ++L++  +M + 
Sbjct: 202 FVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAE 261

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +  T+  +  A+ AAA+  A+ + R +HG+    G      + T L+D Y K+G V+ A
Sbjct: 262 GIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVA 321

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA---PDEYSFLAVLTA 312
           R +FD+ L     I+WNAM+ G+   G      ELF    MR  A   PD  +F+ VL+A
Sbjct: 322 RVLFDQ-LFHRELISWNAMICGFGMHGHADHACELFR--RMRNEAQVMPDHITFVGVLSA 378

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  E+++  + M   Y ++P ++HYTCL+  +G +GR ++A  +   M  +PD+ 
Sbjct: 379 CNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSG 438

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W ALL+   IH   ++A     +LI++ P D   YV+++N+ +  G+W+E A VRK+M 
Sbjct: 439 IWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMT 498

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           +R ++K    SWIE+KGK H FL GD  H R+++IY +L  L     + GYVP    + H
Sbjct: 499 NRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFH 558

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           NV D EKR  +  HSE+LA+AFGL+S  P G  L + KNLR+C DCH   K IS++ +RE
Sbjct: 559 NVEDDEKRNMVRGHSERLAIAFGLIS-TPPGTKLLVTKNLRVCEDCHVVIKLISQIEQRE 617

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I++RDVNRYH F+NG C+C D W
Sbjct: 618 IIIRDVNRYHHFVNGECSCKDHW 640



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 155/358 (43%), Gaps = 25/358 (6%)

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           FLS   +P      N    A++ ++C  LS A   G  LH+  L   L       + LV 
Sbjct: 53  FLSPCPYPY-----NHNNYATILRSCV-LSRAVRPGRQLHARLLVSGLGLDAVLATRLVD 106

Query: 144 FYSRFRSPDNAKKVFDEI-RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTM 201
            Y+       A+++FDE+  + +V  +  +I  +A++     ++ ++ +M +   +    
Sbjct: 107 LYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDN 166

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           +     L+A A L  +   R +H   + +    +V V  GLID Y K G V +A  VFD 
Sbjct: 167 FTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDS 226

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA----- 316
             +V +++ WN+M+A   Q G  +  L L   +   G AP   + ++ ++A  +A     
Sbjct: 227 T-TVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPR 285

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G       W      + KL+      T L+    ++G +  A R+     F  +   W A
Sbjct: 286 GRELHGYGWRRGFGSQDKLK------TSLLDMYAKSGWVTVA-RVLFDQLFHRELISWNA 338

Query: 377 LLSFSAIHGKADMASKMGKRL---IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           ++    +HG AD A ++ +R+     + P D   +V V +  +  G   E  EV  +M
Sbjct: 339 MICGFGMHGHADHACELFRRMRNEAQVMP-DHITFVGVLSACNHGGMVQEAKEVFDLM 395


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 187/547 (34%), Positives = 304/547 (55%), Gaps = 8/547 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           D   +N +I+ Y K      +  LF+ +P+ +  SWTA+IS    H+    +L ++  M 
Sbjct: 183 DLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQ 242

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           +H       N+ T++S     A++  +   G  +H   +++ L        +L+  Y + 
Sbjct: 243 KHDYSK--SNKCTISSALAASAAIP-SLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKC 299

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
            S + A+ +FD++ ERDVV +  MI  + +N R  +  ++F  + +S++    +  +G L
Sbjct: 300 GSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVL 359

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A A+LAA +  + IH + V  G D      + L+  Y K G + +A+ VF E L   + 
Sbjct: 360 NACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVF-EILPQPDL 418

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
            +W +++ GYAQ G     L  F LL   G  PD  +F+ VL+A  +AGL  +  ++   
Sbjct: 419 FSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHS 478

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           +K ++ L   ++HY C+I  + RAG+  +AE I   MP +PD  +W ALL    IHG  +
Sbjct: 479 IKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLE 538

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +A +  K L +I P + + YV +AN+ +  G   E A +R+ M  R + K+ G SWIE++
Sbjct: 539 LAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIR 598

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
            +VHVF  GD  H ++++I   L+EL +  + +GYVP  + +LH+V   +K E L YHSE
Sbjct: 599 REVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSE 658

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           KLA+AFG++S  P G  +++ KNLR C DCH + K+IS +  R+I+VRD NR+H F  GS
Sbjct: 659 KLAVAFGIIS-TPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGS 717

Query: 569 CTCGDLW 575
           C+C D W
Sbjct: 718 CSCKDYW 724



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 160/372 (43%), Gaps = 40/372 (10%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P      +L K C     A   G  +H+  +K S     +  + L+  Y++  S  +A+K
Sbjct: 117 PYASIYLTLLKFCLK-QRALKEGKQVHA-HIKTSGSIGLYISNRLLDMYAKCGSLVDAEK 174

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VFDE+  RD+  +  MI G+ +      + ++F  M + D  S    +SG ++      A
Sbjct: 175 VFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEA 234

Query: 217 ME--------------QCRV------------------IHGHAVVSGLDRNVIVGTGLID 244
           +E              +C +                  IHGH +  GLD + +V   L+D
Sbjct: 235 LELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLD 294

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            YGK G + +AR +FD+ +   + ++W  M+  Y + G +     LF  L      P+++
Sbjct: 295 MYGKCGSIEEARYIFDK-MEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDF 353

Query: 305 SFLAVLTALCNAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
           +F  VL A   A LA E   K I    VR   +      + L+    + G +E+A+ +  
Sbjct: 354 TFAGVLNAC--ADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFE 411

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWD 422
            +P +PD   W +LL   A HG+ D A    + L+      D  A++ V +  +  G  D
Sbjct: 412 ILP-QPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVD 470

Query: 423 EVAEVRKVMKDR 434
           +  E    +K++
Sbjct: 471 KGLEYFHSIKEK 482



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 16/317 (5%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH 90
           +D  ++ +L+  Y K   +  +  +F+ +   ++VSWT +I  +  +      F ++ RH
Sbjct: 284 SDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGF-ALFRH 342

Query: 91  PTLS-FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
              S  +PN  T A +   CA L+ A   G  +H+  +++         SALVH YS+  
Sbjct: 343 LMNSNIMPNDFTFAGVLNACADLA-AEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCG 401

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
             +NAK VF+ + + D+  + +++VG+AQ+ +   +L  F  +  S          G L 
Sbjct: 402 DIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLS 461

Query: 210 AAAELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           A A    +++     H      GL R +     +ID   +AG  ++A  + +E     + 
Sbjct: 462 ACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDK 521

Query: 269 IAWNAMMAGYAQQGDQSTVLELFH-----LLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
             W A++ G    G+    LEL       L E+    P  Y  LA + A  +AG+  E  
Sbjct: 522 YIWAALLGGCRIHGN----LELAKRAAKSLFEIEPENPATYVTLANIYA--SAGMRAEEA 575

Query: 324 KWIERMKVRYKL-EPGL 339
              E M  R  + +PG+
Sbjct: 576 NIRETMDSRGIVKKPGM 592


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 309/558 (55%), Gaps = 5/558 (0%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H  A ++  +   ++   ++  Y K   +  +  +F  + S N+VSW  +I  ++ +
Sbjct: 263 RSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQN 322

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S   F + L+       P   ++      CA+L      G  +H L  +  +      
Sbjct: 323 GESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGD-LERGRYVHRLLDEKKIGFDVSV 381

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  YS+ +  D A  VF  ++ + VV + AMI+G+AQN  + ++L++F +M+S D+
Sbjct: 382 MNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDI 441

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               + +   + A A+L+   Q + IHG A+ + +D+NV V T LID + K G +  AR+
Sbjct: 442 KPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARK 501

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD  +   + I WNAM+ GY   G     L+LF+ ++     P+E +FL+V+ A  ++G
Sbjct: 502 LFDL-MQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSG 560

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E   + E MK  Y LEP ++HY  ++  +GRAGRL+DA +    MP +P   V  A+
Sbjct: 561 LVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAM 620

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    IH   ++  K    L D++P D   +V++AN+ +    WD+VA VR  M+ + ++
Sbjct: 621 LGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQ 680

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K  G S +E++ +VH F +G   H +++ IY  L  L +E +  GYVP  +  +H+V + 
Sbjct: 681 KTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNS-IHDVEED 739

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            K + L  HSE+LA+AFGL++    G  + I KNLR+C DCHE+ KYIS V  REI+VRD
Sbjct: 740 VKEQLLSSHSERLAIAFGLLN-TRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRD 798

Query: 558 VNRYHRFLNGSCTCGDLW 575
           + R+H F NG C+CGD W
Sbjct: 799 LRRFHHFKNGICSCGDYW 816



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 166/368 (45%), Gaps = 19/368 (5%)

Query: 33  RSIYNNLITNYSKSNLLSYS---------------LRLFNHIPSPNIVSWTALISAHSNS 77
           R I+  +ITN  +SNL + +                ++F  +P  ++VSW  +++ ++ +
Sbjct: 162 REIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQN 221

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +      +L+       P+  TL S+    A L  A   G S+H  + +         
Sbjct: 222 GFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLK-ALRIGRSIHGYAFRAGFEYMVNV 280

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +A++  Y +  S  +A+ VF  +  R+VV +  MI G+AQN    ++ + F  M    V
Sbjct: 281 ATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGV 340

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             T   + GAL A A L  +E+ R +H       +  +V V   LI  Y K   V  A  
Sbjct: 341 EPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAAS 400

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF  NL     + WNAM+ GYAQ G  +  L LF  ++     PD ++ ++V+TAL +  
Sbjct: 401 VFG-NLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLS 459

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  ++ KWI  + +R  ++  +   T LI    + G ++ A ++   M  E     W A+
Sbjct: 460 VTRQA-KWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQ-ERHVITWNAM 517

Query: 378 LSFSAIHG 385
           +     +G
Sbjct: 518 IDGYGTNG 525



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 171/395 (43%), Gaps = 34/395 (8%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H + +        F  +A+V+ Y++ R  ++A K+F+ + +RD+V +  ++ G+AQ
Sbjct: 161 GREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQ 220

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N     ++ V   M+ +        +   L A A+L A+   R IHG+A  +G +  V V
Sbjct: 221 NGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNV 280

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            T ++D Y K G V  AR VF + +S  N ++WN M+ GYAQ G+       F  +   G
Sbjct: 281 ATAMLDTYFKCGSVRSARLVF-KGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEG 339

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
             P   S +  L A  N G   E  +++ R+    K+   +     LIS   +  R++ A
Sbjct: 340 VEPTNVSMMGALHACANLGDL-ERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIA 398

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLS 416
             +   +  +     W A++   A +G  + A  +   +   DI P D    V V   L+
Sbjct: 399 ASVFGNLKHKT-VVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKP-DSFTLVSVITALA 456

Query: 417 GV-----GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYT-- 469
            +      +W     +R +M                   V V  A    H +   I T  
Sbjct: 457 DLSVTRQAKWIHGLAIRTLMDK----------------NVFVCTALIDTHAKCGAIQTAR 500

Query: 470 KLAELMEECERLGYVPVWDEMLHNVG-DREKREAL 503
           KL +LM+E     +V  W+ M+   G +   REAL
Sbjct: 501 KLFDLMQE----RHVITWNAMIDGYGTNGHGREAL 531



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 143/317 (45%), Gaps = 29/317 (9%)

Query: 89  RHPTLSFLPNQRTLASLFKTCASLS--HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           RHP+          A L + C SL   H  L       L +K   +++    + L+  + 
Sbjct: 44  RHPS----------AILLELCTSLKELHQIL------PLIIKNGFYNEHLFQTKLISLFC 87

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +F S   A +VF+ +  +  V Y  M+ G+A+NS L D++  +  MR  +V   +Y  + 
Sbjct: 88  KFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTY 147

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L+ + E   + + R IHG  + +G   N+   T +++ Y K   + DA ++F E +   
Sbjct: 148 LLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMF-ERMPQR 206

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + ++WN ++AGYAQ G     +++   ++  G  PD  + ++VL A     +A      I
Sbjct: 207 DLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPA-----VADLKALRI 261

Query: 327 ERMKVRYKLEPGLEHYTCLISAM----GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
            R    Y    G E+   + +AM     + G +  A  +   M    +   W  ++   A
Sbjct: 262 GRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMS-SRNVVSWNTMIDGYA 320

Query: 383 IHGKADMASKMGKRLID 399
            +G+++ A     +++D
Sbjct: 321 QNGESEEAFATFLKMLD 337


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 183/552 (33%), Positives = 311/552 (56%), Gaps = 18/552 (3%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           Q D   +N +I+ Y+    +  + +LF+ +P  +  SW A+IS + +      +L++F  
Sbjct: 126 QKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRM 185

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLF-----GLSLHSLSLKLSLHDKPFCGSAL 141
           M          N+ +  ++F   ++L+ A        G  +H   ++  L       +AL
Sbjct: 186 MQE--------NESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTAL 237

Query: 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201
           +  Y +  S + A+ +FD++ ++D+V +  MI    ++ R  +  S+F D+  S V    
Sbjct: 238 LDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNE 297

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           Y  +G L A A+LAA +  + +HG+    G D      + L+  Y K G    ARRVF++
Sbjct: 298 YTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQ 357

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            +   + ++W +++ GYAQ G     L+ F  L   G  PDE +F+ VL+A  +AGL   
Sbjct: 358 -MPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDI 416

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
             ++   +K ++ L    +HY C+I  + R+GR ++AE I   MP +PD  +W +LL   
Sbjct: 417 GLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGC 476

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
            IHG  ++A +  K L ++ P + + Y+ ++N+ +  G W E  +VR  M +R + K+ G
Sbjct: 477 RIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPG 536

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
           +SWIE+K +VHVFL GD  H +  DI+  L EL ++ +  GYV   + +LH+V + +K +
Sbjct: 537 KSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQ 596

Query: 502 ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
            ++YHSEKLA+AFG++S +P G  +++ KNLR C DCH + KYIS++V+R+I+VRD NR+
Sbjct: 597 NIFYHSEKLAVAFGIISTSP-GTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRF 655

Query: 562 HRFLNGSCTCGD 573
           H F++GSC+C D
Sbjct: 656 HCFVDGSCSCKD 667



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 150/335 (44%), Gaps = 38/335 (11%)

Query: 97  PNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           P+ R  ++L   C  L H  L  G  +H+ +   +        + L+H Y++  S  +A+
Sbjct: 61  PSPRLYSTLIAAC--LRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQ 118

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            +FDEI ++D+  +  MI G+A   R+  +  +F +M   D  S    +SG +     + 
Sbjct: 119 MLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYME 178

Query: 216 AMEQCRV--------------------------------IHGHAVVSGLDRNVIVGTGLI 243
           A++  R+                                IHG+ + SGL+ + +V T L+
Sbjct: 179 ALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALL 238

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           D YGK G +++AR +FD+ ++  + ++W  M+    + G +     LF  L   G  P+E
Sbjct: 239 DLYGKCGSLNEARGIFDQ-MADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNE 297

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
           Y+F  VL A C    A +  K +     R   +P     + L+    + G  E A R+  
Sbjct: 298 YTFAGVLNA-CADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFN 356

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
            MP  PD   W +L+   A +G+ DMA +  + L+
Sbjct: 357 QMP-RPDLVSWTSLIVGYAQNGQPDMALQFFESLL 390


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 299/556 (53%), Gaps = 15/556 (2%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLS 86
           KSS  D   +  LIT Y     L  + RLF+ IP  ++VSW A+IS +  S       + 
Sbjct: 191 KSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVC 250

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
                  + LPN+ T+  +   C       L G  + S              +AL+  Y 
Sbjct: 251 FYEMQEANVLPNKSTMVVVLSACGHTRSGEL-GKWIGSWVRDNGFGSNLQLTNALIDMYC 309

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +    D A+++FD I E+DV+ +  MI G++  S   ++L++F  M  S+V        G
Sbjct: 310 KCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLG 369

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNV------IVGTGLIDGYGKAGIVSDARRVFD 260
            L A A L A++  + +H +     +D+N+       + T LID Y K G +  A RVF 
Sbjct: 370 ILHACACLGALDLGKWVHAY-----IDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVF- 423

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLA 319
            ++   N  +WNAM++G+A  G     L LF  +  +G F PD+ +F+ VL+A   AGL 
Sbjct: 424 RSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLV 483

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
               ++   M   Y + P L+HY C+I  + RA + E+AE +   M  EPD A+W +LLS
Sbjct: 484 DLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLS 543

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
               HG+ +    + +RL  + P +  A+V+++N+ +G GRWD+VA +R  + D+ ++K 
Sbjct: 544 ACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKV 603

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G + IE+ G VH FL GD+ H    +IY  L E+ +  E  G+VP   E+L+++ +  K
Sbjct: 604 PGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWK 663

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             AL  HSEKLA++FGL+   P G T+RIVKNLR+C +CH + K IS++  REI+ RD N
Sbjct: 664 EGALSQHSEKLAISFGLIKTKP-GTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 722

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+C D W
Sbjct: 723 RFHHFKDGFCSCNDCW 738



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 202/460 (43%), Gaps = 49/460 (10%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNY---SKSNLLSYSLRLFNHIPS 61
           LN   + +N +T  +I H+  +K+   +     + + ++   S S  LSY+L LF     
Sbjct: 32  LNLLEKCKNINTFKQI-HSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQ 90

Query: 62  P---NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTC--ASLSHAF 116
               N+  W +LI  +S S   L+      R       PN  T   LFK+C  A  +H  
Sbjct: 91  HHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHE- 149

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFY---------------SRFRSP---------- 151
             G  LH+ +LKL+LH  P   ++++H Y               S  R            
Sbjct: 150 --GKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGY 207

Query: 152 ------DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205
                 D+A+++FDEI  +DVV + AMI G+ Q+ R  +++  F +M+ ++V      + 
Sbjct: 208 VSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMV 267

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
             L A     + E  + I      +G   N+ +   LID Y K G    AR +FD  +  
Sbjct: 268 VVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFD-GIEE 326

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            + I+WN M+ GY+        L LF ++      P++ +FL +L A    G A +  KW
Sbjct: 327 KDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLG-ALDLGKW 385

Query: 326 IE-RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
           +   +    +       +T LI    + G +E AER+  +M    + A W A+LS  A+H
Sbjct: 386 VHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSM-HSRNLASWNAMLSGFAMH 444

Query: 385 GKADMASKMGKRLIDINPY--DDSAYVIVANVLSGVGRWD 422
           G A+ A  +   +++   +  DD  +V V +  +  G  D
Sbjct: 445 GHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVD 484


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 305/559 (54%), Gaps = 11/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
           +H  A++S   +  +I   L+  Y+K   L  + +LF+ +   N+VSW ++I A+    N
Sbjct: 258 IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNEN 317

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++ IF  ML        P   ++      CA L      G  +H LS++L L     
Sbjct: 318 PKEAMLIFQKMLDE---GVKPTDVSVMGALHACADLGD-LERGRFIHKLSVELGLDRNVS 373

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  Y + +  D A  +F +++ R +V + AMI+GFAQN R +D+L+ F+ MRS  
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT 433

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    +     + A AEL+     + IHG  + S LD+NV V T L+D Y K G +  AR
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +FD  +S  +   WNAM+ GY   G     LELF  ++     P+  +FL+V++A  ++
Sbjct: 494 LIFDM-MSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 552

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL     K    MK  Y +E  ++HY  ++  +GRAGRL +A    M MP +P   V+ A
Sbjct: 553 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           +L    IH   + A K  +RL ++NP D   +V++AN+      W++V +VR  M  + +
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           RK  G S +E+K +VH F +G   H  ++ IY  L +L+   +  GYVP  + +L  V +
Sbjct: 673 RKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVEN 731

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K + L  HSEKLA++FGL++    G T+ + KNLR+C DCH + KYIS V  REIVVR
Sbjct: 732 DVKEQLLSTHSEKLAISFGLLNTTA-GTTIHVRKNLRVCADCHNATKYISLVTGREIVVR 790

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D+ R+H F NG+C+CGD W
Sbjct: 791 DMQRFHHFKNGACSCGDYW 809



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 170/346 (49%), Gaps = 10/346 (2%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTLSFLPNQ 99
           Y+K   ++ + ++F+ +P  ++VSW  +++ +S + ++   L +  SM      +  P+ 
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEE---NLKPSF 236

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
            T+ S+    ++L      G  +H  +++          +ALV  Y++  S + A+++FD
Sbjct: 237 ITIVSVLPAVSAL-RLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFD 295

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
            + ER+VV + +MI  + QN    +++ +F  M    V  T   V GAL A A+L  +E+
Sbjct: 296 GMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLER 355

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            R IH  +V  GLDRNV V   LI  Y K   V  A  +F + L     ++WNAM+ G+A
Sbjct: 356 GRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGK-LQSRTLVSWNAMILGFA 414

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G     L  F  +  R   PD +++++V+TA+    +   + KWI  + +R  L+  +
Sbjct: 415 QNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRSCLDKNV 473

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
              T L+    + G +  A R+   M  E     W A++     HG
Sbjct: 474 FVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHG 518



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 148/323 (45%), Gaps = 9/323 (2%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSPL--SLNIFLSMLRHPTLSF 95
           L++ + +   +  + R+F  I S  N++  T L      S L  +L  F+ M R+  +  
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRM-RYDDVE- 132

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P       L K C   +     G  +H L +K       F  + L + Y++ R  + A+
Sbjct: 133 -PVVYNFTYLLKVCGDEAE-LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEAR 190

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           KVFD + ERD+V +  ++ G++QN     +L +   M   ++  +   +   L A + L 
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            +   + IHG+A+ SG D  V + T L+D Y K G +  AR++FD  L   N ++WN+M+
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE-RNVVSWNSMI 309

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
             Y Q  +    + +F  +   G  P + S +  L A  + G   E  ++I ++ V   L
Sbjct: 310 DAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDL-ERGRFIHKLSVELGL 368

Query: 336 EPGLEHYTCLISAMGRAGRLEDA 358
           +  +     LIS   +   ++ A
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTA 391



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 140/306 (45%), Gaps = 9/306 (2%)

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           A L + C+SL         +  L  K  L+ + F  + LV  + R+ S D A +VF+ I 
Sbjct: 41  ALLLERCSSLKEL----RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPID 96

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
            +  V Y  M+ GFA+ S L  +L  F  MR  DV   +Y  +  L+   + A +   + 
Sbjct: 97  SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IHG  V SG   ++   TGL + Y K   V++AR+VFD  +   + ++WN ++AGY+Q G
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDR-MPERDLVSWNTIVAGYSQNG 215

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                LE+   +      P   + ++VL A+    L     K I    +R   +  +   
Sbjct: 216 MARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG-KEIHGYAMRSGFDSLVNIS 274

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--I 400
           T L+    + G LE A ++   M  E +   W +++     +     A  + ++++D  +
Sbjct: 275 TALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV 333

Query: 401 NPYDDS 406
            P D S
Sbjct: 334 KPTDVS 339


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 191/560 (34%), Positives = 303/560 (54%), Gaps = 6/560 (1%)

Query: 19  RIVHARALKSSQADR---SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           + +HA  +++S  +         L+  Y+K   L  + +LFN +    +VSWTA+I+   
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            S          +R    +  PN+ T+ SL   C   + A   G  LH+  L+       
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECG-FTGALQLGKQLHAYILRNGFSVSL 333

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +ALV  Y +     NA+ +FD  + RDV+ + AM+  +AQ + +  + ++F  MR+S
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V  T   +   L   A   A++  + +H +     ++ + I+ T L+D Y K G ++ A
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            R+F E +S  +   WNA++ G+A  G     L++F  +E +G  P++ +F+ +L A  +
Sbjct: 454 GRLFIEAIS-RDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 512

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  E +K  E+M   + L P +EHY C++  +GRAG L++A  +  +MP +P+  VW 
Sbjct: 513 AGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWG 572

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           AL++   +H    +      +L++I P +    V+++N+ +   RW + A VRK MK   
Sbjct: 573 ALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVG 632

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           ++KE G S IEV G VH FL GD+ H +   I   LAE+  +    GYVP    +L N+ 
Sbjct: 633 MKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNID 692

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + EK  AL YHSEKLA+AFGL+S AP    +RIVKNLR+C DCH + K +S++  R I+V
Sbjct: 693 EEEKETALTYHSEKLAMAFGLISTAP-STPIRIVKNLRVCNDCHAATKLLSKIYGRVIIV 751

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H F  G C+CGD W
Sbjct: 752 RDRNRFHHFREGYCSCGDYW 771



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 181/377 (48%), Gaps = 15/377 (3%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +H   LK    DR ++  N L+  Y +   + Y+  +F+ +   ++VSW+ +I + S + 
Sbjct: 116 IHGFVLKKG-LDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNK 174

Query: 79  LSLNIFLSMLRHPTLSFL---PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS--LHD 133
              ++ L ++R   ++F+   P++  + S+    A  ++  + G ++H+  ++ S   H 
Sbjct: 175 -EFDMALELIRE--MNFMQVRPSEVAMVSMVNLFADTANMRM-GKAMHAYVIRNSNNEHM 230

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                +AL+  Y++      A+++F+ + ++ VV + AMI G  +++RL +   +F  M+
Sbjct: 231 GVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQ 290

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             ++      +   +       A++  + +H + + +G   ++ + T L+D YGK   + 
Sbjct: 291 EENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIR 350

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +AR +FD   +  + + W AM++ YAQ         LF  +   G  P + + +++L+ L
Sbjct: 351 NARALFDSTQN-RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS-L 408

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           C    A +  KW+     + ++E      T L+    + G +  A R+ +      D  +
Sbjct: 409 CAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICM 467

Query: 374 WRALLSFSAIHGKADMA 390
           W A+++  A+HG  + A
Sbjct: 468 WNAIITGFAMHGYGEEA 484



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 126/289 (43%), Gaps = 6/289 (2%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           S+ K C  +S   L G  +H   LK  L    F G+AL+  Y      + A+ VFD++ E
Sbjct: 99  SVLKACGQVSWTQL-GKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMME 157

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           RDVV +  MI   ++N     +L +  +M    V  +   +   +   A+ A M   + +
Sbjct: 158 RDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAM 217

Query: 224 HGHAVVSGLDRN--VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
           H + + +  + +  V   T L+D Y K G +  AR++F+  L+    ++W AM+AG  + 
Sbjct: 218 HAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFN-GLTQKTVVSWTAMIAGCIRS 276

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
                  +LF  ++     P+E + L+++   C    A +  K +    +R      L  
Sbjct: 277 NRLEEGTKLFIRMQEENIFPNEITMLSLIVE-CGFTGALQLGKQLHAYILRNGFSVSLAL 335

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            T L+   G+   + +A R         D  +W A+LS  A     D A
Sbjct: 336 ATALVDMYGKCSDIRNA-RALFDSTQNRDVMIWTAMLSAYAQANCIDQA 383


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 190/579 (32%), Positives = 319/579 (55%), Gaps = 41/579 (7%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSML 88
           D   +  +I+  +K  LL  +  L  H P+ N++SWT LIS +S    +  +++ F SML
Sbjct: 170 DAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSML 229

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL----------SLKLSLHD----- 133
                   P++ T+  L   CA L    +FG SLH L           L ++L D     
Sbjct: 230 SD---GIEPDEVTVIGLLSACAQLKD-LVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKC 285

Query: 134 -----------------KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
                            +P   +A++  Y +    D A+ +FD++ +RD+V + ++I G+
Sbjct: 286 GDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGY 345

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
               RL ++L +F  MR  D+ +  + +   L A A L A+ Q R +H       ++ ++
Sbjct: 346 IHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDI 405

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            +GT L+D Y K G V +A  VF + +SV +   W+AM+AG A  G     LE F  +++
Sbjct: 406 YLGTALLDMYLKCGRVEEASLVF-QAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKV 464

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            GF P+  +++A+LTA  ++ L  E   + E M++ + + P +EHY C+I  +GR+G L+
Sbjct: 465 DGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLD 524

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A  +   MP +P+A +W ++LS   +H  A++A    + L+ + P +D+ YV + N+  
Sbjct: 525 EAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYI 584

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
              +W++ +++R++M++R V+K  G S I V G+VH F+  DR H +  +I   + E+  
Sbjct: 585 DSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITR 644

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
             + +GY P+  ++  +V + EK  AL  HSEK+A+AFGL+S AP    L I+KNLR+C 
Sbjct: 645 RLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAP-NLPLHIIKNLRVCE 703

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH + K ISR+  REI+VRD +R+H F +G+C+C D W
Sbjct: 704 DCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 165/427 (38%), Gaps = 79/427 (18%)

Query: 35  IYNNLITNYSKSNLLS--YSLRLFNHIPSPNIVSWTALISAH--SNSPLSLNIFLSMLRH 90
           + N+L+  ++ ++ L   Y+L LF+ +P    +  TAL +    S+ P S  I    +R 
Sbjct: 37  LLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRR 96

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK-PFCGSALVHFYSRFR 149
             +    +  T   LFK CA      L    LH+   +  L    P   + ++H Y    
Sbjct: 97  TGVC--TDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELG 154

Query: 150 SPDNAKKVFDEIRERD-------------------------------VVCYGAMIVGFAQ 178
              +A++ FD+I  +D                               V+ +  +I G+++
Sbjct: 155 LAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSR 214

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH-----------GHA 227
             R  +++  F  M S  +      V G L A A+L  +   R +H           G  
Sbjct: 215 AGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKL 274

Query: 228 VVSGLDRNVIVG---------------------TGLIDGYGKAGIVSDARRVFDENLSVL 266
           VV+ +D     G                       +IDGY K G V  AR +FD+ +   
Sbjct: 275 VVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQ-MEDR 333

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW- 325
           + + +N+++ GY   G     L LF  +       D ++ +++LTA  + G   +     
Sbjct: 334 DLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALH 393

Query: 326 --IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
             IE+  V   +  G    T L+    + GR+E+A  +  AM    D   W A+++  A 
Sbjct: 394 ACIEQRLVEVDIYLG----TALLDMYLKCGRVEEASLVFQAMSVR-DVHTWSAMIAGLAF 448

Query: 384 HGKADMA 390
           +G    A
Sbjct: 449 NGMGKAA 455


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 195/569 (34%), Positives = 314/569 (55%), Gaps = 21/569 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS----- 72
           +++H  A+K     D  +   L+  Y+K   L  + ++F  +P PN+V + A+I+     
Sbjct: 164 KMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQM 223

Query: 73  ---AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
              A   +  ++ +F  M    +    P++ T +S+ K C+++  AF  G  +H+   K 
Sbjct: 224 ETMADEFANEAMYLFFEM---QSRGMKPSEFTFSSILKACSTI-EAFECGKQIHAQIFKY 279

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
           +L    F G+ALV  YS   S ++  K F    + DVV + ++IVG  QN +    L++F
Sbjct: 280 NLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLF 339

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            ++  S      + +S  L A A LAA++    IH +A+ +G+    I+    I  Y K 
Sbjct: 340 HELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKC 399

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  A   F E  +  + ++W+ M++  AQ G     ++LF L++  G AP+  +FL V
Sbjct: 400 GDIDSANMTFKETKNP-DIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGV 458

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  + GL  E  ++ E MK  + + P ++H  C++  +GRAGRL +AE   M   FE 
Sbjct: 459 LVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEG 518

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           D  +WR+LLS   +H   D   ++ +R+I++ P   ++YV++ N+ +  G      E+R 
Sbjct: 519 DPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRN 578

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
           +MKDR V+KE G SWIEV   VH F+AGDR H  ++ IY +L E++EE ++L Y+   DE
Sbjct: 579 LMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI---DE 635

Query: 490 MLHNVGDREKRE---ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
            L +     K +    + YHSEKLA+ FG++S  PR   +R++KNLR C  CHE+ K  S
Sbjct: 636 KLVSDASEPKHKDNSMVSYHSEKLAVTFGIIS-LPRSAPVRVMKNLRSCWHCHETMKLFS 694

Query: 547 RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           R+  REI++RD  R+HRF +GSC+CGD W
Sbjct: 695 RLENREIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 175/387 (45%), Gaps = 26/387 (6%)

Query: 19  RIVHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           R++HA    S      +  N+LI  Y K   + ++  +F      + VSW +LI+ +   
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 75  -SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS-LSHAFLFGLSLHSLSLKLSLH 132
            SN  + L + + MLRH       N   L S  K C S  S +   G  LH  ++KL L 
Sbjct: 121 GSNDEM-LRLLVKMLRH---GLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLD 176

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS----- 187
                G+AL+  Y++    ++A K+F  + + +VV Y AMI GF Q   + D  +     
Sbjct: 177 LDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMY 236

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           +F +M+S  +  + +  S  L+A + + A E  + IH       L  +  +G  L++ Y 
Sbjct: 237 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 296

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
            +G + D  + F  +   L+ ++W +++ G+ Q G     L LFH L   G  PDE++  
Sbjct: 297 LSGSIEDGLKCF-HSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTIS 355

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL----ISAMGRAGRLEDAERIAM 363
            +L+A  N       E+        Y ++ G+ ++T +    I    + G + D+  +  
Sbjct: 356 IMLSACANLAAVKSGEQIHA-----YAIKTGIGNFTIIQNSQICMYAKCGDI-DSANMTF 409

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMA 390
                PD   W  ++S +A HG A  A
Sbjct: 410 KETKNPDIVSWSVMISSNAQHGCAKEA 436



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 157/328 (47%), Gaps = 13/328 (3%)

Query: 59  IPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFL 117
           +P  N+VSW +LIS ++       + +++ +   +S L  ++ T ++    C   +    
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEV-MNLFKEARMSDLRLDKFTFSNALSVCGR-TLDLR 58

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G  +H+L     L       ++L+  Y +    D A+ VF+   E D V + ++I G+ 
Sbjct: 59  LGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYV 118

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE--LAAMEQCRVIHGHAVVSGLDRN 235
           +     + L +   M    +    Y +  AL+A      +++E  +++HG AV  GLD +
Sbjct: 119 RIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLD 178

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ---QGDQ--STVLEL 290
           V+VGT L+D Y K G + DA ++F + +   N + +NAM+AG+ Q     D+  +  + L
Sbjct: 179 VVVGTALLDTYAKIGDLEDATKIF-KLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYL 237

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           F  ++ RG  P E++F ++L A C+   A E  K I     +Y L+        L+    
Sbjct: 238 FFEMQSRGMKPSEFTFSSILKA-CSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 296

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALL 378
            +G +ED  +   + P + D   W +L+
Sbjct: 297 LSGSIEDGLKCFHSTP-KLDVVSWTSLI 323



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +R+VV + ++I G+ Q     + +++F + R SD+    +  S AL        +   R+
Sbjct: 3   KRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRL 62

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH    VSGL   V++   LID Y K G +  AR VF E+   L+S++WN+++AGY + G
Sbjct: 63  IHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVF-ESADELDSVSWNSLIAGYVRIG 121

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG--ESEKWIERMKVRYKLEPGLE 340
               +L L   +   G   + Y+  + L A C +  +   E  K +    V+  L+  + 
Sbjct: 122 SNDEMLRLLVKMLRHGLNLNSYALGSALKA-CGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             T L+    + G LEDA +I   MP +P+  ++ A+++
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIA 218


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 203/579 (35%), Positives = 311/579 (53%), Gaps = 14/579 (2%)

Query: 5   LNQQPQPQNTSTDPRI--VHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60
           LN  P     S  P +  +H  +LK      +  + N  + +Y+K   LSY+ R+F  I 
Sbjct: 396 LNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIR 455

Query: 61  SPNIVSWTALISAHSNSP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
           S  + SW ALI  +S S    LSL+ +  M    +   LP+  T+ SL   C+ +  +  
Sbjct: 456 SKTVNSWNALIGGYSQSSDPRLSLDAYFQM---KSSGLLPDLFTVCSLLSACSQIK-SLK 511

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G  +H L ++  L    F   +L+  Y        A  +FD + ++ +V +  M+ G+ 
Sbjct: 512 LGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYL 571

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN     +LS+F  M    V      +     A + L ++   R  HG+A+   L+ N  
Sbjct: 572 QNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAF 631

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           +   +ID Y K G V ++ +VF+  L   +  +WNAM+ GY   G     ++LF  ++  
Sbjct: 632 IACSVIDMYAKNGSVMESFKVFN-GLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRT 690

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  PDE +FL VLTA  ++GL  E   ++++MK  + + P L+HY C+I  + RAG+L++
Sbjct: 691 GHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDE 750

Query: 358 AERIAMA-MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           A +IA   M  EP   +W  LLS   IH   +M  K+  +L    P     YV+++N+ +
Sbjct: 751 ALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYA 810

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
           G G+WDEV +VR+ MK+  +RK+ G SWIE+ GKV  F+AG+   +  E+I +  + L  
Sbjct: 811 GSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLER 870

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
           E  ++GY P    + H++ + EK E L  HSEKLA+ +GL+     G TLR+ KNLRIC 
Sbjct: 871 EIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIR-TSEGTTLRVYKNLRICV 929

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH + K IS+V+EREIVVRD  R+H F NG C+CGD W
Sbjct: 930 DCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 128/265 (48%), Gaps = 7/265 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D  +   +IT YS       S  +F+ +   N+  W A+IS++S + L  N+    ++  
Sbjct: 116 DDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMI 175

Query: 92  TLS-FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           T S  LP+  T   + K CA +S   + GL++H L +K  L +  F  +ALV FY    S
Sbjct: 176 TESGLLPDNFTFPCVVKACAGVSEVQV-GLAVHGLVVKTRLVEDVFVSNALVSFYGTNGS 234

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD----VGSTMYCVSG 206
             +A +VF  + ER++V + +MI  F+ N    +   +   M   D        +  ++ 
Sbjct: 235 VSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLAT 294

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L   A    +   + +HG A+   LD+ V+V   L+D Y K G ++DA+ +F  N +  
Sbjct: 295 VLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLN-NNK 353

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELF 291
           N ++WN M+ G++  GD     +L 
Sbjct: 354 NVVSWNTMVGGFSAAGDIHKTFDLL 378



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 12/162 (7%)

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           L  + ++ T +I  Y   G   D+R VFD  L   N   WNA+++ Y++      VLE+F
Sbjct: 113 LSNDDVLCTRVITMYSMCGSPDDSRSVFDA-LRKKNLFQWNAVISSYSRNELYHNVLEMF 171

Query: 292 -HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW----IERMKVRYKLEPGLEHYTCLI 346
             ++   G  PD ++F  V+ A      AG SE      +  + V+ +L   +     L+
Sbjct: 172 VKMITESGLLPDNFTFPCVVKA-----CAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALV 226

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           S  G  G + DA R+   MP E +   W +++   + +G ++
Sbjct: 227 SFYGTNGSVSDALRVFKIMP-ERNLVSWNSMIRVFSDNGLSE 267


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 197/578 (34%), Positives = 297/578 (51%), Gaps = 38/578 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D   +  ++  Y +   ++ +  +F  +     V W A+IS +  S +  + F    R  
Sbjct: 231 DDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMV 290

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG----SALVHFYSR 147
           +     ++ T  S+   CA+    F+ G S+H   ++L  +  P       +ALV  YS+
Sbjct: 291 SEKVPLDEFTFTSVLSACANAGF-FVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSK 349

Query: 148 FRSPDNAKKVFDEIRERDVVCYGA-------------------------------MIVGF 176
                 AK++FD +  +DVV +                                 M+ G+
Sbjct: 350 GGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGY 409

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
                  D+L +F  MR+ DV    Y  +GA+ A  EL A++  R +H H V  G + + 
Sbjct: 410 VHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASN 469

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
             G  L+  Y K G V+DAR VF   +  L+S++WNAM++   Q G     LELF  +  
Sbjct: 470 SAGNALLTMYAKCGAVNDARLVF-LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVA 528

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            G  PD  SFL +LTA  +AGL  E   + E MK  + + PG +HY  LI  +GR+GR+ 
Sbjct: 529 EGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIG 588

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A  +   MPFEP  ++W A+LS    +G  +  +    +L  + P  D  Y++++N  S
Sbjct: 589 EARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYS 648

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
             GRW + A VRK+M+DR V+KE G SWIEV  K+HVFL GD  H   +++Y  L  +  
Sbjct: 649 AAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGA 708

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
              +LGYVP    +LH++   EK   L+ HSEKLA+ FGL+   P G T+ ++KNLRIC 
Sbjct: 709 RMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLK-LPPGATVTVLKNLRICG 767

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           DCH +  ++S+ V REIVVRDV R+H F +G C+C  L
Sbjct: 768 DCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCEGL 805



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 175/385 (45%), Gaps = 32/385 (8%)

Query: 25  ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-----PNIVSWTALISAHSN--- 76
           A+  ++ D  ++N +++ +++++L + ++ +F+ +       P+  S+TALISA      
Sbjct: 117 AVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHN 176

Query: 77  --SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             +P    +  S+L+    + L     L +L+  C +   ++     L  +  K  L   
Sbjct: 177 LAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDL--- 233

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + +V  Y R    + A+ VF+E+  +  V + AMI G+ Q+    D+  +F  M S
Sbjct: 234 --TWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVS 291

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI------VGTGLIDGYGK 248
             V    +  +  L A A        + +HG  +   L  N +      V   L+  Y K
Sbjct: 292 EKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIR--LQPNFVPEAALPVNNALVTLYSK 349

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G +  A+R+FD  +++ + ++WN +++GY   G     +E+F ++  +    ++ S++ 
Sbjct: 350 GGKIVIAKRIFD-TMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMV 404

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI---AMAM 365
           +++   + GL+ ++ K   +M+    ++P    Y   I+A G  G L+   ++    +  
Sbjct: 405 MVSGYVHGGLSEDALKLFNQMRAE-DVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQC 463

Query: 366 PFEPDAAVWRALLSFSAIHGKADMA 390
            FE   +   ALL+  A  G  + A
Sbjct: 464 GFEASNSAGNALLTMYAKCGAVNDA 488



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 133/309 (43%), Gaps = 50/309 (16%)

Query: 153 NAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVF-ADMRSSDVGSTMYCVSGALR 209
           +A   FD +    RD V + AM+  FA+ S    ++SVF A + S  +    Y  +  + 
Sbjct: 110 DAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALIS 169

Query: 210 AAAEL--AAMEQCRVIHGHAVVSGL----------------------------------D 233
           A  ++   A   C  +H   + SG                                   D
Sbjct: 170 AVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPD 229

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           ++ +  T ++ GY + G V+ AR VF+E     + + WNAM++GY Q G  +   ELF  
Sbjct: 230 KDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFD-VVWNAMISGYVQSGMCADAFELFRR 288

Query: 294 LEMRGFAPDEYSFLAVLTALCNAG--LAGES-EKWIERMKVRYKLEPGLEHYTCLISAMG 350
           +       DE++F +VL+A  NAG  + G+S    I R++  +  E  L     L++   
Sbjct: 289 MVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYS 348

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY--DDSAY 408
           + G++  A+RI   M  + D   W  +LS     G  D A ++ K    + PY  D S  
Sbjct: 349 KGGKIVIAKRIFDTMNLK-DVVSWNTILSGYIDSGCLDKAVEVFK----VMPYKNDLSWM 403

Query: 409 VIVANVLSG 417
           V+V+  + G
Sbjct: 404 VMVSGYVHG 412


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 306/559 (54%), Gaps = 16/559 (2%)

Query: 20  IVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
           +V AR L    ++R +        S S ++   + LF      +IVSWTA+I+ +   ++
Sbjct: 160 LVSARLLFDKMSERDVV-------SWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
                 +F+ M+     +  PN  T+ SL  +C  +  A   G  LH+  L+        
Sbjct: 213 LEEGERLFVRMIEE---NVFPNDITMLSLIISCGFVG-AVQLGKRLHAYILRNGFGMSLA 268

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +ALV  Y +     +A+ +FD ++ +DV+ + AMI  +AQ + +  +  +F  MR + 
Sbjct: 269 LATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNG 328

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      +   L   A   A++  +  H +    G++ +VI+ T LID Y K G +S A+
Sbjct: 329 VRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQ 388

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           R+F E +   +   WN MMAGY   G     L+LF  +E  G  P++ +F+  L A  +A
Sbjct: 389 RLFSEAID-RDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHA 447

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E +   E+M   + L P +EHY C++  +GRAG L++A ++  +MP  P+ A+W A
Sbjct: 448 GLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           +L+   IH  ++M     + L+ + P +    V+++N+ +   RW++VA +RK +KD  +
Sbjct: 508 MLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGI 567

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE G S IEV G VH F  GD  H   E I   LAE+ ++ +  GY+P    +LHN+ +
Sbjct: 568 KKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDE 627

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK  AL YHSEKLA+AFGL+S AP G  +R+VKNLRIC DCH   K +S++ +R I+VR
Sbjct: 628 EEKETALNYHSEKLAMAFGLISTAP-GTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVR 686

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F  GSC+CG  W
Sbjct: 687 DRNRFHHFREGSCSCGGYW 705



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 150/327 (45%), Gaps = 28/327 (8%)

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           + S+ K C+ +S A + G  +H  S+K  L    F  +AL+  YS   S  +A+ +FD++
Sbjct: 112 IPSVLKACSQISVARM-GKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKM 170

Query: 162 RERDVVC------------YG----------AMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            ERDVV             YG          AMI G+ + + L +   +F  M   +V  
Sbjct: 171 SERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFP 230

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               +   + +   + A++  + +H + + +G   ++ + T L+D YGK G +  AR +F
Sbjct: 231 NDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIF 290

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D ++   + + W AM++ YAQ        +LF  +   G  P+E + +++L+ LC    A
Sbjct: 291 D-SMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLS-LCAVNGA 348

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +  KW      +  +E  +   T LI    + G +  A+R+  +   + D   W  +++
Sbjct: 349 LDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRL-FSEAIDRDICTWNVMMA 407

Query: 380 FSAIHGKADMASKMGKRL--IDINPYD 404
              +HG  + A K+   +  + + P D
Sbjct: 408 GYGMHGYGEKALKLFTEMETLGVKPND 434



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 99/236 (41%), Gaps = 23/236 (9%)

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L+ +  MR  D+    + +   L+A ++++     + IHG +V +GL  +V V   L+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 245 GYGKAGIVSDARRVFDE---------------------NLSVLNSIAWNAMMAGYAQQGD 283
            Y + G +  AR +FD+                       S  + ++W AM+AGY +  D
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
                 LF  +      P++ + L+++ + C    A +  K +    +R      L   T
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIIS-CGFVGAVQLGKRLHAYILRNGFGMSLALAT 271

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
            L+   G+ G +  A  I  +M    D   W A++S  A     D A ++  ++ D
Sbjct: 272 ALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISAYAQANCIDYAFQLFVQMRD 326


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 314/563 (55%), Gaps = 16/563 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIVSWTALISA--- 73
           R +H+  LK    +D ++   ++  YSK   L  +  +F  +P S N+VSWTA+I     
Sbjct: 322 RQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQ 381

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +++ PL+  +F S +R   +   PN+ T    + T  + S   L    +H+  +K +   
Sbjct: 382 NADIPLAAALF-SRMREDNVK--PNEFT----YSTVLTASIPILLP-QIHAQIIKTNYQH 433

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
            P  G+AL+  YS+  + + A  +F  I  +DVV + AM+  ++Q      + +VF  M 
Sbjct: 434 APSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMS 493

Query: 194 SSDVGSTMYCVSGALRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
              +    + +S A+ A A+  A ++Q R  H  ++       + VG+ L+  Y + G +
Sbjct: 494 MQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSI 553

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VF E  +  + ++WN+M++GYAQ G     L+ F  +E  G   D  +FLAV+  
Sbjct: 554 DSARIVF-ERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVG 612

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  E +++ + M + + + P +EHY+C++    RAG+L++   +   MPF   A 
Sbjct: 613 CTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAM 672

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VWR LL    +H   ++     ++L+ + P D + YV+++N+ +  GRW E  EVRK+M 
Sbjct: 673 VWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMD 732

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            ++V+KE G SWI++K KVH F+A D+ H  +E IY KL  +    ++ GY P    +LH
Sbjct: 733 SKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLH 792

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + +K   L  HSE+LALAFGL++  PR   L+IVKNLR+C DCH   K +S + +RE
Sbjct: 793 DIAEEQKETMLVMHSERLALAFGLIATPPR-TPLQIVKNLRVCGDCHMVMKMVSLIEDRE 851

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I++RD +R+H F  G+C+CGD W
Sbjct: 852 IIMRDCSRFHHFNAGACSCGDFW 874



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 158/364 (43%), Gaps = 7/364 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
           +A+  +   L+  Y K   +     +F  +P  N+V+WT+L++ +       ++     R
Sbjct: 132 RAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFR 191

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                  PN  T  S+    AS   A   G  +H+ S+K       F  ++L++ YS+  
Sbjct: 192 MRAEGVWPNPFTFTSVLSAVAS-QGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCG 250

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
             + AK VF ++  RD+V +  ++ G   N   +++L +F D R+S    +    S  ++
Sbjct: 251 LVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIK 310

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
             A L  +   R +H   +  G   +  V T ++D Y K G + DA  +F       N +
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVV 370

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +W AM+ G  Q  D      LF  +      P+E+++  VLTA     L     + I   
Sbjct: 371 SWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQII--- 427

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
           K  Y+  P +   T L+++  + G  E+A  I   M    D   W A+LS  +  G  D 
Sbjct: 428 KTNYQHAPSVG--TALLASYSKLGNTEEALSI-FKMIDHKDVVAWSAMLSCYSQAGDCDG 484

Query: 390 ASKM 393
           A+ +
Sbjct: 485 ATNV 488


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 193/559 (34%), Positives = 307/559 (54%), Gaps = 11/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
           +H  A+++   +  +I   L+  Y+K   L  +  LF+ +   N+VSW ++I A+    N
Sbjct: 258 IHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNEN 317

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++ IF  ML        P   ++      CA L      G  +H LS++L L     
Sbjct: 318 PKEAMVIFQKMLDE---GVKPTDVSVMGALHACADLGD-LERGRFIHKLSVELELDRNVS 373

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  Y + +  D A  +F +++ R +V + AMI+GFAQN R +++L+ F+ M++  
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQART 433

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    +     + A AEL+     + IHG  + + LD+NV V T L+D Y K G +  AR
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIAR 493

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +FD  +S  +   WNAM+ GY   G     LELF  ++     P+  +FL+V++A  ++
Sbjct: 494 LIFDM-MSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHS 552

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL     K    MK  Y +EP ++HY  ++  +GRAGRL +A    M MP +P   V+ A
Sbjct: 553 GLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           +L    IH   + A K+ +RL ++NP D   +V++AN+      W++V +VR  M  + +
Sbjct: 613 MLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           RK  G S +E+K +VH F +G   H  ++ IY  L +L+ + +  GYVP  + +L  + D
Sbjct: 673 RKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLED 731

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K + L  HSEKLA++FGL++    G T+ + KNLR+C DCH + KYIS V  REI+VR
Sbjct: 732 DVKEQLLSSHSEKLAISFGLLNTTA-GTTIHVRKNLRVCADCHNATKYISLVTGREIIVR 790

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D+ R+H F NG+C+CGD W
Sbjct: 791 DMQRFHHFKNGACSCGDYW 809



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 167/344 (48%), Gaps = 6/344 (1%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL-PNQRT 101
           Y+K   +  + ++F+ +P  ++VSW  +++ +S + ++  + L M+       L P+  T
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMA-RMALEMVNLMCEENLKPSFIT 238

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           + S+    ++L      G  +H  +++          +ALV  Y++  S   A+ +FD +
Sbjct: 239 IVSVLPAVSAL-RLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGM 297

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
            ER+VV + +MI  + QN    +++ +F  M    V  T   V GAL A A+L  +E+ R
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
            IH  +V   LDRNV V   LI  Y K   V  A  +F + L     ++WNAM+ G+AQ 
Sbjct: 358 FIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGK-LQSRTIVSWNAMILGFAQN 416

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
           G     L  F  ++ R   PD +++++V+TA+    +   + KWI  + +R  L+  +  
Sbjct: 417 GRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRNCLDKNVFV 475

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
            T L+    + G +  A R+   M  E     W A++     HG
Sbjct: 476 TTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHG 518



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 3/262 (1%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P       L K C   +     G  +H L +K       F  + L + Y++ R    A+K
Sbjct: 133 PVVYNFTYLLKVCGDEAE-LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARK 191

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VFD + ERD+V +  ++ G++QN     +L +   M   ++  +   +   L A + L  
Sbjct: 192 VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRL 251

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +   + IHG+A+ +G D  V + T L+D Y K G +  AR +FD  L   N ++WN+M+ 
Sbjct: 252 IRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLE-RNVVSWNSMID 310

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
            Y Q  +    + +F  +   G  P + S +  L A  + G   E  ++I ++ V  +L+
Sbjct: 311 AYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLG-DLERGRFIHKLSVELELD 369

Query: 337 PGLEHYTCLISAMGRAGRLEDA 358
             +     LIS   +   ++ A
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTA 391



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 140/306 (45%), Gaps = 9/306 (2%)

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           A L + C+SL         +  L  K  L+ +    + LV  + R+ S D A +VF+ I 
Sbjct: 41  ALLLERCSSLKEL----RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPID 96

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           ++  V Y  M+ GFA+ S L  +L  F  MR  +V   +Y  +  L+   + A +   + 
Sbjct: 97  KKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKE 156

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IHG  V SG   ++   TGL + Y K   V +AR+VFD  +   + ++WN ++AGY+Q G
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDR-MPERDLVSWNTIVAGYSQNG 215

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                LE+ +L+      P   + ++VL A+    L     K I    +R   +  +   
Sbjct: 216 MARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLI-RIGKEIHGYAMRAGFDSLVNIA 274

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--I 400
           T L+    + G L+ A  +   M  E +   W +++     +     A  + ++++D  +
Sbjct: 275 TALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGV 333

Query: 401 NPYDDS 406
            P D S
Sbjct: 334 KPTDVS 339


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 319/560 (56%), Gaps = 11/560 (1%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HAR +KS + +D  I + L++ Y K      + RLF+ +P+ ++VSW +L+S  S    
Sbjct: 141 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 200

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               LN F  M         PN+ TL S+   CA +  A   G SLH + +KL +  K  
Sbjct: 201 LGACLNAFCRMRTESGRQ--PNEVTLLSVVSACADMG-ALDEGKSLHGVVVKLGMSGKAK 257

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L++ Y +    D A ++F+E+  R +V + +M+V    N      + +F  M+ + 
Sbjct: 258 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 317

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      +   LRA  +     Q   IH +    G + ++I+ T L++ Y K G ++ + 
Sbjct: 318 INPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASE 377

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F+E +   + IAW AM+AGYA        ++LF L+   G   D  +F  +L+A  ++
Sbjct: 378 DIFEE-IKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHS 436

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E +K+ E M   Y++EP L+HY+C++  +GR+GRLEDA  +  +MP EP + VW A
Sbjct: 437 GLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGA 496

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    ++G  ++  ++ ++L+ ++P D   Y++++N+ S  G W + ++VR +MK+RR+
Sbjct: 497 LLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRL 556

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            +  G S+IE   K+H F+ GD++H R+++I+TKL EL+ +    G  P  + +LH++ +
Sbjct: 557 TRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDE 616

Query: 497 REKREALWYHSEKLALAFG-LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
             K + +  HSEKLA+AFG LV+G+  G  L I KNLRIC DCH + K+ S + +R I++
Sbjct: 617 EVKVDMINKHSEKLAIAFGLLVTGS--GVPLIITKNLRICGDCHSTAKFASLLEKRTIII 674

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD  R+H F +G C+C D W
Sbjct: 675 RDSKRFHHFADGLCSCRDYW 694



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 146/295 (49%), Gaps = 8/295 (2%)

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
           ++L     +C S+S+      ++H+  +K   +   F G  LV  Y +    ++A+++FD
Sbjct: 123 QSLVFAISSCTSVSYCS----AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 178

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGALRAAAELAAME 218
           E+  +D+V + +++ G +    L   L+ F  MR+ S        +   + A A++ A++
Sbjct: 179 EMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALD 238

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           + + +HG  V  G+     V   LI+ YGK G +  A ++F+E + V + ++WN+M+  +
Sbjct: 239 EGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEE-MPVRSLVSWNSMVVIH 297

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
              G     ++LF+L++  G  PD+ + +A+L A  + GL  ++E  I     R      
Sbjct: 298 NHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAES-IHAYIHRCGFNAD 356

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           +   T L++   + GRL  +E I   +  + D   W A+L+  A+H     A K+
Sbjct: 357 IIIATALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAGYAVHACGREAIKL 410



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 47/301 (15%)

Query: 137 CGSALVHFYS-RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           CG+++ H  S  FR  D   K F         C       F + S+ +   S+       
Sbjct: 75  CGTSISHNRSFAFRHTDLIPKQFKRFNTNKGCCI------FREASQFIVVYSI------- 121

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V S ++ +S          ++  C  IH   + S    +  +G  L+  Y K G   DA
Sbjct: 122 -VQSLVFAISSC-------TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDA 173

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALC 314
           +R+FDE +   + ++WN++M+G + +G     L  F  +    G  P+E + L+V++A  
Sbjct: 174 QRLFDE-MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACA 232

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           + G   E  K +  + V+  +    +    LI+  G+ G L+ A ++   MP        
Sbjct: 233 DMGALDEG-KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPV------- 284

Query: 375 RALLSFSA---IHGKADMASKMGKRLID------INPYDDSAYVIV---ANVLSGVGRWD 422
           R+L+S+++   IH     A K G  L +      INP  D A ++    A   +G+GR  
Sbjct: 285 RSLVSWNSMVVIHNHNGYAEK-GMDLFNLMKRAGINP--DQATMVALLRACTDTGLGRQA 341

Query: 423 E 423
           E
Sbjct: 342 E 342


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 197/545 (36%), Positives = 307/545 (56%), Gaps = 15/545 (2%)

Query: 17  DPRIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D R +HA    S  A D  + N+LI  Y K   +  + ++F+ + + ++VSWT+LI+ ++
Sbjct: 69  DARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYA 128

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            + +   ++ +   ML+     F PN  T ASL K   + + + + G  +H+L++K   H
Sbjct: 129 QNDMPAEAIGLLPGMLKG---RFKPNGFTFASLLKAVGAYADSGIGG-QIHALAVKCDWH 184

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           +  + GSAL+  Y+R    D A  VFD++  ++ V + A+I GFA+      +L VFA+M
Sbjct: 185 EDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEM 244

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           + +   +T +  S    A A + A+EQ + +H H + S       VG  ++D Y K+G +
Sbjct: 245 QRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSM 304

Query: 253 SDARRVFDENLSVLNS--IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            DAR+VF+    VLN   + WN+M+  +AQ G     +  F  +   G   ++ SFL +L
Sbjct: 305 IDARKVFER---VLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCIL 361

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           TA  + GL  E + + + +K  Y LEP +EHY  ++  +GRAG L  A      MP EP 
Sbjct: 362 TACSHGGLVKEGKHYFDMIK-EYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPT 420

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           AAVW ALL+   +H  A +       +  ++P D    V++ N+ +  G WD  A VRK+
Sbjct: 421 AAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKM 480

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK   V+KE   SW+E++  VH+F+A D  H R E+IY    E+  +  + GYVP  D +
Sbjct: 481 MKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYV 540

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L +V ++E+   L YHSEK+ALAF L+   P G T+RI+KN+RIC DCH +FKYIS+V E
Sbjct: 541 LLHVDEQEREANLQYHSEKIALAFALIQ-MPAGATIRIMKNIRICGDCHSAFKYISKVFE 599

Query: 551 REIVV 555
           REIV+
Sbjct: 600 REIVI 604



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 105/235 (44%), Gaps = 16/235 (6%)

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           + S ++  T       + A A+   ++  R IH H   S    +  +   LI  Y K G 
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGS 101

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           V +A +VFD+ +   + ++W +++AGYAQ    +  + L   +    F P+ ++F ++L 
Sbjct: 102 VVEAHKVFDK-MRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLK 160

Query: 312 AL---CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           A+    ++G+ G+    I  + V+      +   + L+    R G+++ A  +   +   
Sbjct: 161 AVGAYADSGIGGQ----IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-S 215

Query: 369 PDAAVWRALLSFSAIHGKADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVG 419
            +   W AL+S  A  G  + A    ++M +   +   +    Y  + + L+G+G
Sbjct: 216 KNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHF---TYSSIFSALAGIG 267


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 191/564 (33%), Positives = 315/564 (55%), Gaps = 26/564 (4%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +H+ AL+   A D  +   L+  Y+KSN+   + Y+ ++F  +P  +++SWTALIS +  
Sbjct: 276 LHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQ 335

Query: 77  SPLSLN----IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           S +  N    +F  ML     S  PN  T +S+ K+CAS+S     G  +H+  +K +  
Sbjct: 336 SGVQENKVMALFGEMLNE---SIKPNHITYSSILKSCASISD-HDSGRQVHAHVIKSNQA 391

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                G+ALV  Y+     + A++VF+++ ER ++        F  + R+V         
Sbjct: 392 SAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLDHRIV--------- 442

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
              DVG +    +  + AAA +  + + + +H  ++ +G   +  V   L+  Y + G +
Sbjct: 443 -RMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYL 501

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DA R F+E L   N I+W +M++G A+ G     L LFH + + G  P++ +++AVL+A
Sbjct: 502 EDACRSFNE-LKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSA 560

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL  E +++   M+  + L P +EHY C++  + R+G +++A      MP + DA 
Sbjct: 561 CSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADAL 620

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW+ LL     H   ++     K ++++ P D + YV+++N+ +  G WDEVA +R  M+
Sbjct: 621 VWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMR 680

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           D  + KE G SW+EV+   H F AGD  H R +DIY KL  L+ + + +GYVP    +LH
Sbjct: 681 DNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLH 740

Query: 493 NVGDREKREALWYHSEKLALAFGLV-SGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           ++ D  K + L  HSEK+A+AFGL+ + AP  K +RI KNLR+C DCH + KY+S+   R
Sbjct: 741 DMSDELKEQYLLQHSEKIAVAFGLITTSAP--KPIRIFKNLRVCADCHSAIKYMSKATRR 798

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI++RD NR+HR  +G C+CG+ W
Sbjct: 799 EIILRDSNRFHRMKDGECSCGEYW 822



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 159/351 (45%), Gaps = 10/351 (2%)

Query: 19  RIVHARALKSSQADRS--IYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISAHS 75
           R +H R L+    DR   + N+L+T YS+   ++ +  +F+ +    +IVSWTA+ S  +
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +       L +        LPN  TL +    C       L G  +  L  K+ L    
Sbjct: 128 RNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTD 187

Query: 136 FC-GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              GSAL+   +R     +A+KVFD + E+ VV +  +I  + Q     +++ +F D   
Sbjct: 188 VAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLE 247

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI--- 251
                  Y +S  + A  EL ++     +H  A+  GL  +  V  GL+D Y K+ I   
Sbjct: 248 DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQA 307

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ-STVLELFHLLEMRGFAPDEYSFLAVL 310
           +  A +VF E +   + I+W A+++GY Q G Q + V+ LF  +      P+  ++ ++L
Sbjct: 308 MDYANKVF-ERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSIL 366

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
            + C +    +S + +    ++            L+S    +G +E+A R+
Sbjct: 367 KS-CASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRV 416


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 191/557 (34%), Positives = 310/557 (55%), Gaps = 5/557 (0%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   LK++   +  + N L+  YSK + +    +LF  +P  + +S+  +I++++ +  
Sbjct: 263 VHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQ 322

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
               F    +     F   Q   A+L  + A+ S     G  +H  ++ +  + +    +
Sbjct: 323 FKESFDLFRKLQFTRFDRRQFPFATLL-SIATSSLNLRMGRQIHCQAITVGANFESRVEN 381

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV  Y++      A+K+FD I  +  V + AMI  + Q  +  + ++VF+DMR + V +
Sbjct: 382 ALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPA 441

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                +  LRA A LA++   R +H   + SG   NV  G+ L+D Y K G ++DA + F
Sbjct: 442 DQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSF 501

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +   NS++WNA+++ YAQ G+    L  F  +   G+ PD  SFL+VL+A  + G  
Sbjct: 502 GE-MPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFV 560

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E+      M   Y++ P  EHYT ++  + R GR ++AE++   MPFEP   +W ++L+
Sbjct: 561 EEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLN 620

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSA-YVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
              IH   ++A K   RL ++    D+A Y+ ++N+ +  G+WD VA+V+K M+DR VRK
Sbjct: 621 SCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRK 680

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
               SW+E+K + HVF A D+ H   + I  K+  L +E E+ GY P     LH+V +  
Sbjct: 681 VPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVI 740

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K E+L YHSE+ A+AF L++  P G  + ++KNLR C DCH + K IS++VEREI+VRD 
Sbjct: 741 KIESLKYHSERFAIAFALMN-TPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDS 799

Query: 559 NRYHRFLNGSCTCGDLW 575
           +R+H F +G C+CGD W
Sbjct: 800 SRFHHFKDGVCSCGDYW 816



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 185/406 (45%), Gaps = 8/406 (1%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   +K   + +  + N+L+  Y K++ L  + +LF H+ + + V++ +L++ +SN  L
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGL 221

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +       L        P+  T A+L      L     FG  +H   LK +     F G+
Sbjct: 222 NEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDT-KFGQQVHGFVLKTNFVWNVFVGN 280

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+ +YS+    D   K+F E+ E D + Y  +I  +A N +  +S  +F  ++ +    
Sbjct: 281 ALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDR 340

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             +  +  L  A     +   R IH  A+  G +    V   L+D Y K     +A+++F
Sbjct: 341 RQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIF 400

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D N++  +++ W AM++ Y Q+G     + +F  +   G   D+ +F ++L A  N  LA
Sbjct: 401 D-NIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACAN--LA 457

Query: 320 GES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             S  + +  + +R      +   + L+    + G + DA +    MP E ++  W AL+
Sbjct: 458 SISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMP-ERNSVSWNALI 516

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDE 423
           S  A +G  D      +++I      DS +++ V +  S  G  +E
Sbjct: 517 SAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEE 562



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 122/275 (44%), Gaps = 2/275 (0%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N +I+ + K   LS +  LF+ +     VSWT LI  +  S  S   F            
Sbjct: 78  NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIE 137

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+  TL +L      L    +  + +H+  +KL         ++LV  Y +      A +
Sbjct: 138 PDYVTLVTLLSGFGELETKNVI-VQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQ 196

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +F  +  +D V + +++ G++      +++ +F ++ +S +  + +  +  L AA  L  
Sbjct: 197 LFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDD 256

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
            +  + +HG  + +    NV VG  L+D Y K   V +  ++F E +  L+ I++N ++ 
Sbjct: 257 TKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXE-MPELDGISYNVVIT 315

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
            YA  G      +LF  L+   F   ++ F  +L+
Sbjct: 316 SYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLS 350


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 194/580 (33%), Positives = 303/580 (52%), Gaps = 40/580 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D   +  ++  Y +   +  +  +F  +     V W A+IS + +S + +  F  + R  
Sbjct: 227 DALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAF-ELFRRM 285

Query: 92  TLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG----SALVHFYS 146
            L  +P ++ T  S+   CA+    F  G S+H    +L  +  P       +ALV  YS
Sbjct: 286 VLERVPLDEFTFTSVLSACANAGF-FAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYS 344

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL------------------------ 182
           +  +   A+++FD ++ +DVV +  ++ G+ ++S L                        
Sbjct: 345 KCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSG 404

Query: 183 -------VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
                   D+L +F  MR+ DV    Y  +GA+ A  EL +++  + +HGH V  G + +
Sbjct: 405 YVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGS 464

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
              G  LI  Y + G V +A  +F   +  ++S++WNAM++   Q G     LELF  + 
Sbjct: 465 NSAGNALITMYARCGAVKEANLMF-LVMPNIDSVSWNAMISALGQHGHGREALELFDRMV 523

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G  PD  SFL VLTA  ++GL  E  ++ E MK  + + PG +HYT LI  +GRAGR+
Sbjct: 524 AEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRI 583

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
            +A  +   MPFEP  ++W A+LS     G  ++ +    +L  + P  D  Y++++N  
Sbjct: 584 GEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTY 643

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           S  GRW + A VRK+M+DR V+KE G SWIE   KVHVF+ GD  H     +Y  L  + 
Sbjct: 644 SAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVG 703

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
               +LGYVP    +LH++   +K   L+ HSE+LA+ FGL+   P G T+ ++KNLRIC
Sbjct: 704 ARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLK-LPPGATVTVLKNLRIC 762

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            DCH    ++S+ V REIVVRDV R+H F +G C+CG+ W
Sbjct: 763 DDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 108/505 (21%), Positives = 205/505 (40%), Gaps = 80/505 (15%)

Query: 25  ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-----PNIVSWTALISAHSNSP- 78
           A+  ++ D  ++N +I+ Y++++  + ++ +F  + +     P+  S+TAL+SA  + P 
Sbjct: 113 AVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPN 172

Query: 79  LSL----NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           +S+     +  S+L+      L     L +L+  C +L         L  +  K +L   
Sbjct: 173 ISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDAL--- 229

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + +V  Y R      A+ VF+E+  +  V + AMI G+  +  +V++  +F  M  
Sbjct: 230 --TWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVL 287

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI------VGTGLIDGYGK 248
             V    +  +  L A A        + +HG   ++ L  N +      V   L+  Y K
Sbjct: 288 ERVPLDEFTFTSVLSACANAGFFAHGKSVHGQ--ITRLQPNFVPEAALPVNNALVTLYSK 345

Query: 249 AGIVSDARRVFD------------------------------ENLSVLNSIAWNAMMAGY 278
            G ++ ARR+FD                              E +   N ++W  M++GY
Sbjct: 346 CGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGY 405

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
              G     L+LF+ +      P +Y++   ++A C    + +  K +    V+   E  
Sbjct: 406 VHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISA-CGELGSLKHGKQLHGHLVQLGFEGS 464

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
                 LI+   R G +++A  + + MP   D+  W A++S    HG    A ++  R++
Sbjct: 465 NSAGNALITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISALGQHGHGREALELFDRMV 523

Query: 399 DINPYDDS-AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
               Y D  +++ V    +  G  DE  +  + MK         R +  + G        
Sbjct: 524 AEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMK---------RDFGIIPG-------- 566

Query: 458 DRMHERTEDIYTKLAELMEECERLG 482
                  ED YT+L +L+    R+G
Sbjct: 567 -------EDHYTRLIDLLGRAGRIG 584



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 17/114 (14%)

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
           +Y +SG L AAA L   + C V                 T L+  Y  AG +  A   FD
Sbjct: 68  LYTLSGDLPAAATLFRADPCPV---------------AATSLVAAYAAAGRLPAAVSFFD 112

Query: 261 E-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTA 312
               +  +++  NA+++ YA+    +  + +F  LL      PD+YSF A+L+A
Sbjct: 113 AVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSA 166


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 196/566 (34%), Positives = 312/566 (55%), Gaps = 40/566 (7%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
           Y+    + +SL LF+    P++  +TA I+  S + L    FL  ++  +    PN+ T 
Sbjct: 74  YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           +SL K+C++ S     G  +H+  LK  L   P+  + LV  Y++     +A+KVFD + 
Sbjct: 134 SSLLKSCSTKS-----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG---------------- 206
           ER +V   AMI  +A+   +  + ++F  M   D+ S    + G                
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248

Query: 207 ----------------ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
                           AL A +++ A+E  R IH     S +  NV V TGLID Y K G
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE-MRGFAPDEYSFLAV 309
            + +A  VF++     + +AWNAM+AGYA  G     L LF+ ++ + G  P + +F+  
Sbjct: 309 SLEEAVLVFNDT-PRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGT 367

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  +AGL  E  +  E M   Y ++P +EHY CL+S +GRAG+L+ A      M  + 
Sbjct: 368 LQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDA 427

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           D+ +W ++L    +HG   +  ++ + LI +N  +   YV+++N+ + VG ++ VA+VR 
Sbjct: 428 DSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRN 487

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
           +MK++ + KE G S IE++ KVH F AGDR H ++++IYT L ++ E  +  GYVP  + 
Sbjct: 488 LMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNT 547

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +L ++ + EK ++L  HSE+LA+A+GL+S  P G  L+I KNLR+C DCH   K IS++ 
Sbjct: 548 VLQDLEETEKEQSLQVHSERLAIAYGLISTKP-GSPLKIFKNLRVCSDCHTVTKLISKIT 606

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
            R+IV+RD NR+H F +GSC+CGD W
Sbjct: 607 GRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 123/273 (45%), Gaps = 14/273 (5%)

Query: 20  IVHARALKSSQADRSIYNN--LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +V A+ +     +RS+ ++  +IT Y+K   +  +  LF+ +   +IVSW  +I  ++  
Sbjct: 177 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQH 236

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL--SLKLSLH 132
                +L +F  +L        P++ T+ +    C+ +  A   G  +H    S ++ L+
Sbjct: 237 GFPNDALMLFQKLLAEGKPK--PDEITVVAALSACSQIG-ALETGRWIHVFVKSSRIRLN 293

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            K   G  L+  YS+  S + A  VF++   +D+V + AMI G+A +    D+L +F +M
Sbjct: 294 VKVCTG--LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEM 351

Query: 193 RS-SDVGSTMYCVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           +  + +  T     G L+A A    + E  R+        G+   +     L+   G+AG
Sbjct: 352 QGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAG 411

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
            +  A           +S+ W++++      GD
Sbjct: 412 QLKRAYETIKNMNMDADSVLWSSVLGSCKLHGD 444


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 198/562 (35%), Positives = 317/562 (56%), Gaps = 14/562 (2%)

Query: 21  VHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---N 76
           VHA  +K+     + +   L+  Y K + L  + ++ + +P  N+VSWTA+IS +S   +
Sbjct: 73  VHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGH 132

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           S  +L++F  M+R       PN+ T A++  +C   S     G  +H L +K +     F
Sbjct: 133 SSEALSVFAEMMRSDGK---PNEFTFATVLTSCIRAS-GLALGKQIHGLIVKWNYDSHIF 188

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GS+L+  Y++    + A+++F+ + ERDVV   A+I G+AQ     ++L +F  ++S  
Sbjct: 189 VGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEG 248

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +       +  L A + LA ++  +  H H +   L    ++   LID Y K G +S A+
Sbjct: 249 MRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQ 308

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALCN 315
           R+FD N+    +I+WNAM+ GY++ G    VLELF L+ + +   PD  + LAVL+  C+
Sbjct: 309 RLFD-NMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSG-CS 366

Query: 316 AGLAGESEKWIERMKV--RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            G   ++   I    V   Y ++P  EHY C++  +GRAGR+++A      MP +P A V
Sbjct: 367 HGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGV 426

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
             +LL    +H   D+   +G RLI+I P +   YVI++N+ +  GRW++V  VR +M  
Sbjct: 427 LGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQ 486

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           + V KE GRSWI+ +  +H F A DR H R E++  K+ E+  + ++ GYVP    +L++
Sbjct: 487 KAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYD 546

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + +K + L  HSEKLAL FGL++    G  +R+ KNLRIC DCH   K  S+V ERE+
Sbjct: 547 VDEEQKEKMLLGHSEKLALTFGLITTG-EGIPIRVFKNLRICVDCHNFAKIFSKVFEREV 605

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
            +RD NR+H+ + G C+CGD W
Sbjct: 606 SLRDKNRFHQIVKGICSCGDYW 627



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 171/371 (46%), Gaps = 9/371 (2%)

Query: 47  NLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLF 106
           NL+    R F+  P+  + ++  +    SN  L   +   ++  P + F        +L 
Sbjct: 3   NLMRLIHRSFSSSPNSVLQTFRPISQLCSNGRLQEALLEMVMLGPEIGF----HCYDALL 58

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166
             C     A   G  +H+  +K       +  + L+ FY +    ++A+KV DE+ E++V
Sbjct: 59  NACLD-KRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 117

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
           V + AMI  ++Q     ++LSVFA+M  SD     +  +  L +    + +   + IHG 
Sbjct: 118 VSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGL 177

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
            V    D ++ VG+ L+D Y KAG + +AR +F E L   + ++  A++AGYAQ G    
Sbjct: 178 IVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIF-ECLPERDVVSCTAIIAGYAQLGLDEE 236

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            LE+F  L+  G  P+  ++ ++LTAL    L  +  K      +R +L         LI
Sbjct: 237 ALEMFQRLQSEGMRPNYVTYASLLTALSGLALL-DHGKQAHCHVLRRELPFYAVLQNSLI 295

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
               + G L  A+R+   MP E  A  W A+L   + HG      ++ + + D       
Sbjct: 296 DMYSKCGNLSYAQRLFDNMP-ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPD 354

Query: 407 AYVIVANVLSG 417
           A  ++A VLSG
Sbjct: 355 AVTLLA-VLSG 364


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 319/560 (56%), Gaps = 11/560 (1%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HAR +KS + +D  I + L++ Y K      + RLF+ +P+ ++VSW +L+S  S    
Sbjct: 84  IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGY 143

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               LN F  M         PN+ TL S+   CA +  A   G SLH + +KL +  K  
Sbjct: 144 LGACLNAFCRMRTESGRQ--PNEVTLLSVVSACADMG-ALDEGKSLHGVVVKLGMSGKAK 200

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L++ Y +    D A ++F+E+  R +V + +M+V    N      + +F  M+ + 
Sbjct: 201 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 260

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      +   LRA  +     Q   IH +    G + ++I+ T L++ Y K G ++ + 
Sbjct: 261 INPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASE 320

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F+E +   + IAW AM+AGYA        ++LF L+   G   D  +F  +L+A  ++
Sbjct: 321 DIFEE-IKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHS 379

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E +K+ E M   Y++EP L+HY+C++  +GR+GRLEDA  +  +MP EP + VW A
Sbjct: 380 GLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGA 439

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    ++G  ++  ++ ++L+ ++P D   Y++++N+ S  G W + ++VR +MK+RR+
Sbjct: 440 LLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRL 499

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            +  G S+IE   K+H F+ GD++H R+++I+TKL EL+ +    G  P  + +LH++ +
Sbjct: 500 TRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDE 559

Query: 497 REKREALWYHSEKLALAFG-LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
             K + +  HSEKLA+AFG LV+G+  G  L I KNLRIC DCH + K+ S + +R I++
Sbjct: 560 EVKVDMINKHSEKLAIAFGLLVTGS--GVPLIITKNLRICGDCHSTAKFASLLEKRTIII 617

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD  R+H F +G C+C D W
Sbjct: 618 RDSKRFHHFADGLCSCRDYW 637



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 147/304 (48%), Gaps = 8/304 (2%)

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           P        ++L     +C S+S+      ++H+  +K   +   F G  LV  Y +   
Sbjct: 57  PPFQVYSIVQSLVFAISSCTSVSYCS----AIHARVIKSLNYSDGFIGDRLVSMYFKLGY 112

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGALR 209
            ++A+++FDE+  +D+V + +++ G +    L   L+ F  MR+ S        +   + 
Sbjct: 113 DEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVS 172

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A A++ A+++ + +HG  V  G+     V   LI+ YGK G +  A ++F+E + V + +
Sbjct: 173 ACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEE-MPVRSLV 231

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +WN+M+  +   G     ++LF+L++  G  PD+ + +A+L A  + GL  ++E  I   
Sbjct: 232 SWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAES-IHAY 290

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
             R      +   T L++   + GRL  +E I   +  + D   W A+L+  A+H     
Sbjct: 291 IHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAGYAVHACGRE 349

Query: 390 ASKM 393
           A K+
Sbjct: 350 AIKL 353



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           V   + A +   ++  C  IH   + S    +  +G  L+  Y K G   DA+R+FDE +
Sbjct: 65  VQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE-M 123

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCNAGLAGES 322
              + ++WN++M+G + +G     L  F  +    G  P+E + L+V++A  + G   E 
Sbjct: 124 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 183

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
            K +  + V+  +    +    LI+  G+ G L+ A ++   MP     + W +++    
Sbjct: 184 -KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVS-WNSMVVIHN 241

Query: 383 IHGKADMASKMGKRL--IDINPYDDSAYVIV---ANVLSGVGRWDE 423
            +G A+    +   +    INP  D A ++    A   +G+GR  E
Sbjct: 242 HNGYAEKGMDLFNLMKRAGINP--DQATMVALLRACTDTGLGRQAE 285


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 192/597 (32%), Positives = 328/597 (54%), Gaps = 49/597 (8%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---- 75
           +H R L     +D  I N LI  Y + N L  + ++F  +P  ++VSW +LIS ++    
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 76  -NSPL-----SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
            N  L     S+ +F+ M+      F P+  T+ S+ + C  L     FG  +H   +  
Sbjct: 197 WNEALEIYYQSIKLFMEMVNQ----FKPDLLTITSILQACGHLGD-LEFGKYVHDYMITS 251

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
                    + L++ Y++  +   +++VF  ++ +D V + +MI  + QN ++ DSL VF
Sbjct: 252 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVF 311

Query: 190 ADMRSSDV-----------------------------GST--MYCVSGALRAAAELAAME 218
            +M++ D+                             G T  M  +   L   + LAA  
Sbjct: 312 ENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKR 371

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           Q + IHG     GL+ +V VG  LI+ Y K G + ++ +VF + +   + + W A+++  
Sbjct: 372 QGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVF-KLMKTKDVVTWTALISAC 430

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
              G+    +  F  +E  G  PD  +F+A++ A  ++GL  E   +  RMK  YK+EP 
Sbjct: 431 GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPR 490

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           +EHY C++  + R+  L+ AE   ++MP +PD+++W ALLS   + G  ++A ++ +R+I
Sbjct: 491 IEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERII 550

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
           ++NP D   YV+V+N+ + +G+WD+V  +RK +K R ++K+ G SW+E++ KV+VF  G 
Sbjct: 551 ELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGT 610

Query: 459 RMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVS 518
           +  E+ E++   L  L     + GY+     +LH++ + EKR+ L  HSE+LA+AFGL++
Sbjct: 611 KFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLN 670

Query: 519 GAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             P G  L+++KNLR+C DCH   KYIS++V+RE++VRD NR+H F +G+C+CGD W
Sbjct: 671 TKP-GTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 160/374 (42%), Gaps = 49/374 (13%)

Query: 60  PSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
           PS N+  W ++I A +++ L   +L+++    R   +   P+  T  S+   CA L   F
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQR---IRLQPDTYTFPSVINACAGLLD-F 131

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
               S+H   L +      + G+AL+  Y RF   D A+KVF+E+  RDVV + ++I G+
Sbjct: 132 EMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 191

Query: 177 AQNSRLVDSLSV-------FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
             N    ++L +       F +M  +     +  ++  L+A   L  +E  + +H + + 
Sbjct: 192 NANGYWNEALEIYYQSIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMIT 250

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
           SG + +      LI+ Y K G +  ++ VF   +   +S++WN+M+  Y Q G     L+
Sbjct: 251 SGYECDTTASNILINMYAKCGNLLASQEVF-SGMKCKDSVSWNSMINVYIQNGKMGDSLK 309

Query: 290 LFHLLEMR-------------------------------GFAPDEYSFLAVLTALCNAGL 318
           +F  ++ R                               G  PD  + L++L  +C+   
Sbjct: 310 VFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSIL-PVCSLLA 368

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           A    K I     +  LE  +     LI    + G L ++ ++   M    D   W AL+
Sbjct: 369 AKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-TKDVVTWTALI 427

Query: 379 SFSAIHGKADMASK 392
           S   ++G+   A +
Sbjct: 428 SACGMYGEGKKAVR 441



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 126/274 (45%), Gaps = 14/274 (5%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNS 180
           LHSL + L LH      + L+  Y+ FR P ++  VF       +V  + ++I     N 
Sbjct: 35  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNG 94

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              ++LS++++ +   +    Y     + A A L   E  + IH   +  G   ++ +G 
Sbjct: 95  LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGN 154

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-----LLE 295
            LID Y +   +  AR+VF+E + + + ++WN++++GY   G  +  LE+++      +E
Sbjct: 155 ALIDMYCRFNDLDKARKVFEE-MPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFME 213

Query: 296 M-RGFAPDEYSFLAVLTALCNAGLAGESE--KWIERMKVRYKLEPGLEHYTCLISAMGRA 352
           M   F PD  +  ++L A    G  G+ E  K++    +    E        LI+   + 
Sbjct: 214 MVNQFKPDLLTITSILQA---CGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC 270

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           G L  ++ +   M  + D+  W ++++    +GK
Sbjct: 271 GNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGK 303


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  344 bits (882), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 182/479 (37%), Positives = 272/479 (56%), Gaps = 15/479 (3%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+     S  K C  LS   + G S+HS ++K       F GS++V  Y++     +A+K
Sbjct: 8   PDDHIFPSATKACGILSRCDI-GQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDARK 66

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +FDE+ +R+VV +  MI G++Q     ++L +F      D+    +  S  +R       
Sbjct: 67  MFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRVCGNSTL 126

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +E  + IHG  + +  D +  VG+ LI  Y K G++ DA  VF E + + N   WNAM+ 
Sbjct: 127 LELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHE-IPIRNLGMWNAMLI 185

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
             AQ        +LF  +E  G  P+  +FL VL A  +AGL  + + + E MK  Y +E
Sbjct: 186 ACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQFYFELMK-EYGIE 244

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
           PG +HY  ++  +GRAG+L+DA  I   MP EP  +VW ALL+   IHG  ++AS +  R
Sbjct: 245 PGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTELASFVADR 304

Query: 397 LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLA 456
           + ++ P           V S  GR++E A  RK+++D+ V+KE G SW+E   ++H F A
Sbjct: 305 VFELGP-----------VSSAAGRYEEAARARKMLRDQGVKKETGLSWVEEGNRIHTFAA 353

Query: 457 GDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGL 516
           GDR H  T+DIY KL EL EE ER GY+     +L  V   EK + + YHSE+LA+AFGL
Sbjct: 354 GDRSHPYTKDIYKKLEELGEEMERAGYIADTSFVLQEVDGEEKNQTIRYHSERLAIAFGL 413

Query: 517 VSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +S  P  + +R++KNLR+C DCH + K++S+   R I+VRD NR+HRF +G+C+C D W
Sbjct: 414 ISFPPE-RPIRVMKNLRVCGDCHTAIKFMSKCCGRTIIVRDNNRFHRFEDGNCSCRDYW 471



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 117/267 (43%), Gaps = 8/267 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
           VH+ A+K+    D  + ++++  Y+K   +  + ++F+ +P  N+VSW+ +I  +S    
Sbjct: 32  VHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDARKMFDEMPDRNVVSWSGMIYGYSQMGE 91

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F   L         N  T +S+ + C + S     G  +H L LK S     F
Sbjct: 92  DEEALRLFKQALIE---DLDVNDFTFSSVVRVCGN-STLLELGKQIHGLCLKTSYDSSSF 147

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GS+L+  YS+    ++A  VF EI  R++  + AM++  AQ++    +  +F  M    
Sbjct: 148 VGSSLISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVG 207

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +          L A +    +E+ +         G++        ++D  G+AG + DA 
Sbjct: 208 MKPNFITFLCVLYACSHAGLVEKGQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAV 267

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGD 283
            +  +         W A++ G    GD
Sbjct: 268 SIIKKMPMEPTESVWGALLTGCRIHGD 294


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 200/558 (35%), Positives = 309/558 (55%), Gaps = 6/558 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLIT-NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +HAR + +     RS+   L++  Y+ ++ +SY+ RLF  IP P+   + +LI+  S   
Sbjct: 38  IHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFS 97

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
                 L   R    +   +  T +++ K+ A L+ AF  G ++H            +  
Sbjct: 98  FPQESLLCYRRMLLANISSSNYTFSAVIKSSADLT-AFSIGETIHCHVYICGYGLDAYVQ 156

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +ALV FY++      A+KVFD++ E+ VV + +MI G+ QN    +++ +F  M+   V 
Sbjct: 157 AALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVK 216

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                    L A A++ A+     +H +   +  D NV++GT L++ Y + G VS AR V
Sbjct: 217 PDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREV 276

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD ++   N +AW AM++GY   G  S  +ELF+ +   G  P+  +F+AVL+A  +AGL
Sbjct: 277 FD-SMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGL 335

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA-ERIAMAMPFEPDAAVWRAL 377
             E  +    MK  Y L P +EH  C++  +GRAG L +A + I    P EP  AVW A+
Sbjct: 336 VDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAM 395

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    +H   D+  ++ + L+ I P +   YV+++N+ +  GR D V ++R +M   R++
Sbjct: 396 LGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLK 455

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           KE G S I+V  KV++F  GD+ H +T  IY  L ELM  C   GY+P  + ++H V + 
Sbjct: 456 KEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEE 515

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           E+  AL YHSEKLA+AFGL+     G  +RIVKNLR+C DCH + KYIS +  REI VRD
Sbjct: 516 EREYALRYHSEKLAIAFGLLKTG-SGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRD 574

Query: 558 VNRYHRFLNGSCTCGDLW 575
             R+H F +GSC+C D W
Sbjct: 575 RLRFHHFKDGSCSCQDYW 592


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 180/541 (33%), Positives = 300/541 (55%), Gaps = 6/541 (1%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           +NL   YSK   LS + + F  +P  + V WT++I     +        + ++  T    
Sbjct: 215 SNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVF 274

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
            +Q  L S    C++L  A  FG SLH+  LKL    + F G+AL   YS+     +A  
Sbjct: 275 IDQHVLCSTLSACSALK-ASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASN 333

Query: 157 VFDEIRER--DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           VF +I      +V   A+I G+ +  ++  +LS F D+R   +    +  +  ++A A  
Sbjct: 334 VF-QIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQ 392

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           A +E    +HG  V     R+  V + L+D YGK G+   + ++FDE +   + IAWN +
Sbjct: 393 AKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDE-IENPDEIAWNTL 451

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           +  ++Q G     +E F+ +  RG  P+  +F+ +L    +AG+  +   +   M+  Y 
Sbjct: 452 VGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYG 511

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           + P  EHY+C+I  +GRAG+L++AE     MPFEP+   W + L    IHG  + A    
Sbjct: 512 VVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAA 571

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
            +L+ + P +  A+V+++N+ +   +W++V  +RK++KD  + K  G SW++++ K HVF
Sbjct: 572 DKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVF 631

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
              D  H + ++IY KL  L+++ +R+GYVP  + +L ++ D  K + L YHSE++A+AF
Sbjct: 632 GVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAF 691

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
            L++  P G  + + KNLR+C DCH + K+IS+V ER I+VRD++R+H F NGSC+CGD 
Sbjct: 692 SLLT-CPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDY 750

Query: 575 W 575
           W
Sbjct: 751 W 751



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 165/350 (47%), Gaps = 5/350 (1%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N+ +  YSK   L Y+++LF+ +   N+VSWT++I+  +++        S  +      +
Sbjct: 114 NHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEI 173

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
             Q  L+S+ + C SL  A  FG  +H L +K     + F GS L   YS+     +A K
Sbjct: 174 ATQFALSSVLQACTSLG-AIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACK 232

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
            F+E+  +D V + +MI GF +N     +L+ +  M + DV    + +   L A + L A
Sbjct: 233 AFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKA 292

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
               + +H   +  G +    +G  L D Y K+G +  A  VF  +   ++ ++  A++ 
Sbjct: 293 SSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIID 352

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN-AGLAGESEKWIERMKVRYKL 335
           GY +       L  F  L  RG  P+E++F +++ A  N A L   S+   + +K  +K 
Sbjct: 353 GYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKR 412

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +P +   + L+   G+ G  + + ++   +   PD   W  L+   + HG
Sbjct: 413 DPFVS--STLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLVGVFSQHG 459



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           L + +T+A L +T A  +     G  LH++ ++       F  +  ++ YS+    D   
Sbjct: 72  LSDTKTVAHLIQTYAR-TKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTI 130

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           K+FD++ +R++V + ++I GFA NSR  ++LS F  MR     +T + +S  L+A   L 
Sbjct: 131 KLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLG 190

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A++    +H   V  G    + VG+ L D Y K G +SDA + F+E +   +++ W +M+
Sbjct: 191 AIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEE-MPCKDAVLWTSMI 249

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            G+ + GD    L  +  +       D++   + L+A C+A
Sbjct: 250 DGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSA-CSA 289



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H + +K + + D  + + L+  Y K  L  +S++LF+ I +P+ ++W  L+   S   L
Sbjct: 401 LHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGL 460

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115
             N   +          PN  T  +L K C   SHA
Sbjct: 461 GRNAIETFNGMIHRGLKPNAVTFVNLLKGC---SHA 493


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 196/564 (34%), Positives = 324/564 (57%), Gaps = 12/564 (2%)

Query: 17  DPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH- 74
           D + +H   LK   + D  +  +L+  YS+  L+  + +LF+ +P+ +  SW A+IS + 
Sbjct: 12  DGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYC 71

Query: 75  --SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
              N+  +L+I   M R   +    +  T+AS+   CA +    L G  +H   +K  L 
Sbjct: 72  QNGNAAEALDIADEM-RLEGVKM--DAITVASVLPVCAQVGD-ILSGKLIHLYVIKHGLE 127

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            + F  +AL++ Y++F S  +A+KVF  +  +DVV +  +I G+AQN    +++ V+  M
Sbjct: 128 FELFVSNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTLITGYAQNGLASEAIEVYLLM 186

Query: 193 RS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
               ++          L A + + A++Q   IHG  + + L  +V VGT LID YGK G 
Sbjct: 187 EEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGK 246

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA  +F + +   NS+ WNAM++ Y   GD    LELF  ++     PD  +F+++L+
Sbjct: 247 LDDAISLFYQ-VPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLS 305

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  ++GL  +++     M+  Y ++P L+HY C++   GRAG LE A      MP +PDA
Sbjct: 306 ACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDA 365

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           + W ALL+   IHG  ++     +RL +++  +   YV+++N+ + VG+W+ V +VR + 
Sbjct: 366 SAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLA 425

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           +DR +RK  G S I +  KV VF  G++ H + E+IY +L +L  + + +GYVP +  +L
Sbjct: 426 RDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVL 485

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            +V + EK   L  HSE+LA+A+G++S +P+   +RI KNLR+C DCH   K+IS + ER
Sbjct: 486 QDVEEDEKEHILMGHSERLAIAYGIISTSPK-TPIRIFKNLRVCGDCHTVTKFISIITER 544

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD +R+H F  G+C+CGD W
Sbjct: 545 EIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 151/294 (51%), Gaps = 9/294 (3%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           + K C  L    L G  +H L LKL      F  ++LVH YSRF    +A+K+FD++  R
Sbjct: 3   VVKACGDL----LDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPAR 58

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
           D   + AMI G+ QN    ++L +  +MR   V      V+  L   A++  +   ++IH
Sbjct: 59  DRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIH 118

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
            + +  GL+  + V   LI+ Y K G +  A++VF   L + + ++WN ++ GYAQ G  
Sbjct: 119 LYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF--GLLIKDVVSWNTLITGYAQNGLA 176

Query: 285 STVLELFHLL-EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
           S  +E++ L+ E     P++ +++++L A  + G   +  + I    ++  L   +   T
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMR-IHGQVIKNCLYSDVFVGT 235

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           CLI   G+ G+L+DA  +   +P   ++  W A++S   +HG  + A ++ + +
Sbjct: 236 CLIDMYGKCGKLDDAISLFYQVP-RKNSVPWNAMISCYGVHGDGEKALELFREM 288


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 190/566 (33%), Positives = 304/566 (53%), Gaps = 5/566 (0%)

Query: 11   PQNTSTDPRIVHARA-LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
            P N  T  R VH +A +     +  + N L+  YS    L  +  LF+ +   + VSW+ 
Sbjct: 748  PTNL-TQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSV 806

Query: 70   LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
            ++   +     +N F +          P+  TL  + + C  L +    G  +H +  K 
Sbjct: 807  MVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKN-LQMGRLIHHIVYKF 865

Query: 130  SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
             L    F  +ALV  Y + R  ++A+ +FD++ ERD+V +  MI G+A+     +SL +F
Sbjct: 866  GLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLF 925

Query: 190  ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
              MR   V      +   + A A+L AM + R I  +        +VI+GT +ID + K 
Sbjct: 926  DKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKC 985

Query: 250  GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
            G V  AR +FD  +   N I+W+AM+A Y   G     L+LF ++   G  P++ + +++
Sbjct: 986  GCVESAREIFDR-MEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSL 1044

Query: 310  LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
            L A  +AGL  E  ++   M   Y +   ++HYTC++  +GRAGRL++A ++  +M  E 
Sbjct: 1045 LYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEK 1104

Query: 370  DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
            D  +W A L     H    +A K    L+++ P +   Y++++N+ +  GRW++VA++R 
Sbjct: 1105 DEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRD 1164

Query: 430  VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
            +M  RR++K  G +WIEV  K H F  GD  H R+++IY  L  L  + E +GYVP  + 
Sbjct: 1165 LMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNF 1224

Query: 490  MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
            +LH+V +  K   L+ HSEKLA+AFGL++  P    +RI+KNLR+C DCH   K +S + 
Sbjct: 1225 VLHDVDEELKIGILYTHSEKLAIAFGLIA-TPEHTPIRIIKNLRVCGDCHTFCKLVSAIT 1283

Query: 550  EREIVVRDVNRYHRFLNGSCTCGDLW 575
             R I+VRD NR+H F  G+C+CGD W
Sbjct: 1284 GRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/519 (32%), Positives = 276/519 (53%), Gaps = 4/519 (0%)

Query: 16  TDPRIVHARA-LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T  R VHA+A +     +  + N LI  YS    L  +  LF+ +   + VSW+ ++   
Sbjct: 76  TQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGF 135

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           +     +N F +          P+  TL  + + C  L +    G  +H +  K  L   
Sbjct: 136 AKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKN-LQMGRLIHHIVYKFGLDLD 194

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  +ALV  Y + R  ++A+ +FD+++ERD+V +  MI G+A+  +  +SL +F  MR 
Sbjct: 195 HFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 254

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V      +   + A A+L AM + R+I  +        +VI+GT +ID Y K G V  
Sbjct: 255 EGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVES 314

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR +FD  +   N I+W+AM+A Y   G     L+LF ++   G  PD+ +  ++L A  
Sbjct: 315 AREIFDR-MEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACS 373

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  E  ++   M   Y +   ++HYTC++  +GRAGRL++A ++  +M  E D  +W
Sbjct: 374 HAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLW 433

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            A L     H    +A K    L+++   +   YV+++N+ +  GRW++VA++R +M  R
Sbjct: 434 GAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQR 493

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           R++K  G +WIEV  K H F  GD  H R+++IY  L  L  + E +GYVP  + +LH+V
Sbjct: 494 RLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDV 553

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
            +  K   L+ HSEKLA+AFGL++  P    +RI+KNLR
Sbjct: 554 DEELKIGILYTHSEKLAIAFGLIA-TPEHTPIRIIKNLR 591



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 7/174 (4%)

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           + Q R +H  A V G+  N++V   LI  Y     + DA  +FD  + V +S++W+ M+ 
Sbjct: 75  LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFD-GMCVRDSVSWSVMVG 133

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           G+A+ GD       F  L   G  PD Y+   V+ A C      +  + I  +  ++ L+
Sbjct: 134 GFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA-CRDLKNLQMGRLIHHIVYKFGLD 192

Query: 337 PGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
             L+H+ C  L+    +   +EDA  +   M  E D   W  ++   A  GKA+
Sbjct: 193 --LDHFVCAALVDMYVKCREIEDARFLFDKMQ-ERDLVTWTVMIGGYAECGKAN 243


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 188/547 (34%), Positives = 309/547 (56%), Gaps = 15/547 (2%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIVSWTALISA---HSNSPLSLNIFLSMLR 89
           ++   L   YSK   L+ +L +F+    S N+VSWTA+IS    + + PL++ +F S +R
Sbjct: 338 NVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLF-SRMR 396

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
              +  +PN+ T +++ K  ASLS   +    +H+  +K +    P  G+AL+  YS+F 
Sbjct: 397 EDRV--MPNEFTYSAMLK--ASLS---ILPPQIHAQVIKTNYQHIPSVGTALLASYSKFG 449

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           S ++A  +F  I ++DVV + AM+   AQ      +  +F  M    +    + +S  + 
Sbjct: 450 STEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVID 509

Query: 210 AAA-ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           A A   A ++Q R  H  ++       + V + L+  Y + G +  A+ VF E  +  + 
Sbjct: 510 ACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVF-ERQTDRDL 568

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WN+M++GYAQ G     +E F  +E  G   D  +FLAV+    + GL  E +++ + 
Sbjct: 569 VSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDS 628

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M   +K+ P +EHY C++    RAG+L++   +   MPF   A VWR LL    +H   +
Sbjct: 629 MVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVE 688

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +      +L+ + P+D S YV+++N+ +  G+W E  EVRK+M  R+V+KE G SWI++K
Sbjct: 689 LGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIK 748

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
            KVH F+A D+ H  ++ IY KL  ++   ++ GY P    +LH++ + +K   L  HSE
Sbjct: 749 NKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSE 808

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           +LALAFGL++  P G  L+IVKNLR+C DCH   K +S + +REI++RD +R+H F  G+
Sbjct: 809 RLALAFGLIA-TPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGA 867

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 868 CSCGDFW 874



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 173/377 (45%), Gaps = 11/377 (2%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
            +L+  Y K   +   + +F  +P  N+V+WT+L++  +++ +   +     R       
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN  T AS+    AS   A   G  +H+ S+K       F  ++L++ Y++    ++AK 
Sbjct: 199 PNPFTFASVLSAVAS-QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKS 257

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF+ +  RD+V +  ++ G   N   +++L +F + R++    T    +  ++  A L  
Sbjct: 258 VFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQ 317

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +   R +H   +  G      V T L D Y K G ++DA  +F       N ++W A+++
Sbjct: 318 LALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS 377

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           G  Q GD    + LF  +      P+E+++ A+L A  +  L  +    +  +K  Y+  
Sbjct: 378 GCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI-LPPQIHAQV--IKTNYQHI 434

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS----K 392
           P +   T L+++  + G  EDA  I   M  + D   W A+LS  A  G  + A+    K
Sbjct: 435 PSVG--TALLASYSKFGSTEDALSI-FKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNK 491

Query: 393 MGKRLIDINPYDDSAYV 409
           M  + I  N +  S+ +
Sbjct: 492 MAIQGIKPNEFTISSVI 508



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 178/388 (45%), Gaps = 25/388 (6%)

Query: 2   ALDLNQQPQPQNTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60
           ALDL Q+            VHA+++K   ++   + N+L+  Y+K  L+  +  +FN + 
Sbjct: 216 ALDLGQR------------VHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME 263

Query: 61  SPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLP--NQRTLASLFKTCASLSHAFLF 118
           + ++VSW  L++    +   L      L H + + +    Q T A++ K CA+L    L 
Sbjct: 264 TRDMVSWNTLMAGLQLNECELEAL--QLFHESRATMGKMTQSTYATVIKLCANLKQLAL- 320

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD-EIRERDVVCYGAMIVGFA 177
              LHS  LK   H      +AL   YS+     +A  +F      R+VV + A+I G  
Sbjct: 321 ARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCI 380

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN  +  ++ +F+ MR   V    +  S  L+A+  +   +    IH   + +       
Sbjct: 381 QNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQ----IHAQVIKTNYQHIPS 436

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           VGT L+  Y K G   DA  +F + +   + +AW+AM++ +AQ GD      LF+ + ++
Sbjct: 437 VGTALLASYSKFGSTEDALSIF-KMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQ 495

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  P+E++  +V+ A        +  +    + ++Y+    +   + L+S   R G ++ 
Sbjct: 496 GIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDS 555

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHG 385
           A+ I      + D   W +++S  A HG
Sbjct: 556 AQ-IVFERQTDRDLVSWNSMISGYAQHG 582



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 8/305 (2%)

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--FCGSALVHFYSRFRSPDN 153
           L +  TL+ + K C S+    L G  LH L +K   HD+     G++LV  Y +  S   
Sbjct: 96  LVDSATLSCVLKACRSVPDRVL-GEQLHCLCVKCG-HDRGEVSAGTSLVDMYMKCGSVCE 153

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
             +VF+ + +++VV + +++ G A      + +++F  MR+  +    +  +  L A A 
Sbjct: 154 GIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVAS 213

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
             A++  + +H  +V  G   +V V   L++ Y K G+V DA+ VF+  +   + ++WN 
Sbjct: 214 QGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNW-METRDMVSWNT 272

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           +MAG      +   L+LFH  E R        S  A +  LC         + +    ++
Sbjct: 273 LMAGLQLNECELEALQLFH--ESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK 330

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           +         T L  A  + G L DA  I        +   W A++S    +G   +A  
Sbjct: 331 HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390

Query: 393 MGKRL 397
           +  R+
Sbjct: 391 LFSRM 395


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 184/558 (32%), Positives = 313/558 (56%), Gaps = 10/558 (1%)

Query: 22  HARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNS 77
           H  ALKS  +  + + N LI  YSK + +  ++++   +P  +I  +  +++    H++ 
Sbjct: 146 HGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHM 205

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             ++++ L ++    + +  N  T  ++F+ CASL    L G  +H+  LK  +    + 
Sbjct: 206 AEAVDV-LKLIISEGIEW--NNATYVTIFRLCASLKDITL-GKQVHAQMLKSDIDCDVYI 261

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           GS+++  Y +  +  + +  FD ++ R+VV + ++I  + QN    ++L++F+ M    +
Sbjct: 262 GSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCI 321

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               Y ++    +AA L+A+     +H  A  SGL  NV+VG  LI  Y K+G +  A+ 
Sbjct: 322 PPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQS 381

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF  N++  N I WNA++ G++  G     L +F  +   G  P+  +F+ V+ A  +  
Sbjct: 382 VF-SNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLK 440

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E   +   +  ++++ PGLEHYTC++  + R+GRL++AE    +     D   WR L
Sbjct: 441 LVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTL 500

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L+   +H   D   K+ + L+ + P D   Y++++N+ + V RWD V E+RK+M++R V+
Sbjct: 501 LNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVK 560

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           KE G SW+E++   HVF + D  H     IY  + +L+ +   LGYVP  D +LH++ D 
Sbjct: 561 KEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDE 620

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           +K + L YHSEKLA+A+GL+   P G  + ++KNLR+C DCH + K IS+V  R IVVRD
Sbjct: 621 QKVDNLSYHSEKLAVAYGLMK-TPSGAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRD 679

Query: 558 VNRYHRFLNGSCTCGDLW 575
            NR+H F NG C+CGD W
Sbjct: 680 ANRFHHFQNGCCSCGDYW 697



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 171/371 (46%), Gaps = 22/371 (5%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNSPLSL-NIFLSMLRHPTL 93
           N+LI  Y K + +S + +LF+ +P  N+VSW+AL++ +  + +PL +  +F  M+    +
Sbjct: 61  NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNI 120

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
              PN+  +A+   +C   S  ++ G   H  +LK  L    +  +AL+  YS+      
Sbjct: 121 --FPNEYVIATAISSCD--SQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGA 176

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A ++   +   D+ CY  ++ G  Q++ + +++ V   + S  +           R  A 
Sbjct: 177 AIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCAS 236

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           L  +   + +H   + S +D +V +G+ +ID YGK G V   R  FD  L   N ++W +
Sbjct: 237 LKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDR-LQSRNVVSWTS 295

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV------LTALCNAGLAGESEKWIE 327
           ++A Y Q       L LF  +E+    P+EY+   +      L+ALC   L  +     E
Sbjct: 296 IIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALC---LGDQLHARAE 352

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
           +  ++  +  G      LI    ++G +  A+ +   M    +   W A+++  + HG  
Sbjct: 353 KSGLKGNVMVG----NALIIMYFKSGDILAAQSVFSNMTC-CNIITWNAIITGHSHHGLG 407

Query: 388 DMASKMGKRLI 398
             A  M + ++
Sbjct: 408 KEALSMFQDMM 418



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 17/168 (10%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSG---LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           L+ AA+   ++  R IH H  ++     D  V     LI+ Y K   VS AR++FD ++ 
Sbjct: 26  LKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFD-SMP 84

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCNAGLAGESE 323
             N ++W+A+MAGY Q G+   V ELF  + ++    P+EY    + TA+ +     +S+
Sbjct: 85  RRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEY---VIATAISSC----DSQ 137

Query: 324 KWIERMKVR-YKLEPGLEHY----TCLISAMGRAGRLEDAERIAMAMP 366
            ++E  +   Y L+ GLE +      LI    +   +  A +I   +P
Sbjct: 138 MYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVP 185


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 191/557 (34%), Positives = 310/557 (55%), Gaps = 5/557 (0%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   LK++   +  + N L+  YSK + +    +LF  +P  + +S+  +I++++ +  
Sbjct: 263 VHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQ 322

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
               F    +     F   Q   A+L  + A+ S     G  +H  ++ +  + +    +
Sbjct: 323 FKESFDLFRKLQFTRFDRRQFPFATLL-SIATSSLNLRMGRQIHCQAITVGANFESRVEN 381

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV  Y++      A+K+FD I  +  V + AMI  + Q  +  + ++VF+DMR + V +
Sbjct: 382 ALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPA 441

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                +  LRA A LA++   R +H   + SG   NV  G+ L+D Y K G ++DA + F
Sbjct: 442 DQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSF 501

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +   NS++WNA+++ YAQ G+    L  F  +   G+ PD  SFL+VL+A  + G  
Sbjct: 502 GE-MPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFV 560

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E+      M   Y++ P  EHYT ++  + R GR ++AE++   MPFEP   +W ++L+
Sbjct: 561 EEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLN 620

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSA-YVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
              IH   ++A K   RL ++    D+A Y+ ++N+ +  G+WD VA+V+K M+DR VRK
Sbjct: 621 SCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRK 680

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
               SW+E+K + HVF A D+ H   + I  K+  L +E E+ GY P     LH+V +  
Sbjct: 681 VPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVDEVI 740

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K E+L YHSE+ A+AF L++  P G  + ++KNLR C DCH + K IS++VEREI+VRD 
Sbjct: 741 KIESLKYHSERFAIAFALMN-TPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDS 799

Query: 559 NRYHRFLNGSCTCGDLW 575
           +R+H F +G C+CGD W
Sbjct: 800 SRFHHFKDGVCSCGDYW 816



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 185/406 (45%), Gaps = 8/406 (1%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   +K   + +  + N+L+  Y K++ L  + +LF H+ + + V++ +L++ +SN  L
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGL 221

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +       L        P+  T A+L      L     FG  +H   LK +     F G+
Sbjct: 222 NEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDT-KFGQQVHGFVLKTNFVWNVFVGN 280

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+ +YS+    D   K+F E+ E D + Y  +I  +A N +  +S  +F  ++ +    
Sbjct: 281 ALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDR 340

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             +  +  L  A     +   R IH  A+  G +    V   L+D Y K     +A+++F
Sbjct: 341 RQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIF 400

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D N++  +++ W AM++ Y Q+G     + +F  +   G   D+ +F ++L A  N  LA
Sbjct: 401 D-NIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACAN--LA 457

Query: 320 GES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             S  + +  + +R      +   + L+    + G + DA +    MP E ++  W AL+
Sbjct: 458 SISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMP-ERNSVSWNALI 516

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDE 423
           S  A +G  D      +++I      DS +++ V +  S  G  +E
Sbjct: 517 SAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEE 562



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 122/275 (44%), Gaps = 2/275 (0%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N +I+ + K   LS +  LF+ +     VSWT LI  +  S  S   F            
Sbjct: 78  NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIE 137

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+  TL +L      L    +  + +H+  +KL         ++LV  Y +      A +
Sbjct: 138 PDYVTLVTLLSGFGELETKNVI-VQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQ 196

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +F  +  +D V + +++ G++      +++ +F ++ +S +  + +  +  L AA  L  
Sbjct: 197 LFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDD 256

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
            +  + +HG  + +    NV VG  L+D Y K   V +  ++F E +  L+ I++N ++ 
Sbjct: 257 TKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYE-MPELDGISYNVVIT 315

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
            YA  G      +LF  L+   F   ++ F  +L+
Sbjct: 316 SYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLS 350


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 309/559 (55%), Gaps = 10/559 (1%)

Query: 21  VHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS-- 77
           +HA  +K        + N LI  Y+    +  + R+F+ +   N+ +W ++ + ++ S  
Sbjct: 146 IHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGN 205

Query: 78  -PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               + +F  ML    L    ++ TL S+   C  L+   L G  ++    +  L   P 
Sbjct: 206 WEEVVKLFHEMLE---LDIRFDEVTLVSVLTACGRLADLEL-GEWINRYVEEKGLKGNPT 261

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++LV  Y++    D A+++FD++  RDVV + AMI G++Q SR  ++L +F +M+ ++
Sbjct: 262 LITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKAN 321

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      +   L + A L A+E  + +H       +   V +GT L+D Y K G V  + 
Sbjct: 322 IDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSI 381

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF + + V N ++W  ++ G A  G     LE F+L+  +   P++ +F+ VL+A  +A
Sbjct: 382 EVFGK-MPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHA 440

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E       M   + +EP +EHY C++  +GRAG +E+A +    MP +P+A +WR 
Sbjct: 441 GLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRT 500

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+   +H   ++  +  K+LI + P     Y++++N+ + VGRW++  +VR  MK++ +
Sbjct: 501 LLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGI 560

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S IE+ G +H F A D +H ++E+IY  + ++M++ +  GYVP   E   +  +
Sbjct: 561 KKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEE 620

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            +K  ++ +HSEKLA+AFGL+   P G T+RI KNLR+C DCH + K +S+V  REIVVR
Sbjct: 621 DDKESSVSHHSEKLAIAFGLIKSPP-GTTIRITKNLRVCTDCHNATKLVSKVFNREIVVR 679

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F  GSC+C D W
Sbjct: 680 DRTRFHHFKEGSCSCNDYW 698



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 180/378 (47%), Gaps = 9/378 (2%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHS--NSPLSLNIFLSMLRHPTLSFLPNQRTLASLF 106
           + Y++ +F  I  P+  ++  +I   +   SP    +    +   ++   P++ T   + 
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQ--PDEFTFPCIL 131

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166
           K C+ L  A   G  +H+L +K       F  + L+H Y+     + A++VFDE+ ER+V
Sbjct: 132 KVCSRL-QALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNV 190

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
             + +M  G+ ++    + + +F +M   D+      +   L A   LA +E    I+ +
Sbjct: 191 RTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRY 250

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
               GL  N  + T L+D Y K G V  ARR+FD+ +   + +AW+AM++GY+Q      
Sbjct: 251 VEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQ-MDRRDVVAWSAMISGYSQASRCRE 309

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            L+LFH ++     P+E + +++L++ C    A E+ KW+     + +++  +   T L+
Sbjct: 310 ALDLFHEMQKANIDPNEITMVSILSS-CAVLGALETGKWVHFFIKKKRMKLTVTLGTALM 368

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDD 405
               + G +E +  +   MP + +   W  L+   A +G+   A +    +++ N   +D
Sbjct: 369 DFYAKCGSVESSIEVFGKMPVK-NVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPND 427

Query: 406 SAYVIVANVLSGVGRWDE 423
             ++ V +  S  G  DE
Sbjct: 428 VTFIGVLSACSHAGLVDE 445



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 130/293 (44%), Gaps = 17/293 (5%)

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           S D A  +F +I E D   Y  MI GF       +++ +F +M  + V    +     L+
Sbjct: 73  SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
             + L A+ +   IH   +  G   +  V   LI  Y   G V  ARRVFDE +S  N  
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDE-MSERNVR 191

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            WN+M AGY + G+   V++LFH +       DE + ++VLTA C      E  +WI   
Sbjct: 192 TWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTA-CGRLADLELGEWIN-- 248

Query: 330 KVRYKLEPGLEHYTCLISAM----GRAGRLEDAERIAMAMPFEPDAAVWRALLS----FS 381
             RY  E GL+    LI+++     + G+++ A R+   M    D   W A++S     S
Sbjct: 249 --RYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMD-RRDVVAWSAMISGYSQAS 305

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV--GRWDEVAEVRKVMK 432
                 D+  +M K  ID N     + +    VL  +  G+W      +K MK
Sbjct: 306 RCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMK 358


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 317/572 (55%), Gaps = 22/572 (3%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS- 77
           +HA ALK+   D + +  + L+  Y     +    R+F+ +    I  W A+I+ +S + 
Sbjct: 237 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 296

Query: 78  --PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               +L +F+ M    +   L N  T+A +   C   S AF    ++H   +K  L    
Sbjct: 297 HDKEALLLFIGM--EESAGLLANSTTMAGVVPACVR-SGAFSRKEAIHGFVVKRGLDRDR 353

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  + L+  YSR    D A ++F ++ +RD+V +  MI G+  +    D+L +   M++ 
Sbjct: 354 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 413

Query: 196 D-----------VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +           +      +   L + A L+A+ + + IH +A+ + L  +V VG+ L+D
Sbjct: 414 ERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 473

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G +  +R+VFD+ +   N I WN ++  Y   G+    ++L  ++ ++G  P+E 
Sbjct: 474 MYAKCGCLQMSRKVFDQ-IPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 532

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F++V  A  ++G+  E  +    MK  Y +EP  +HY C++  +GRAGR+++A ++   
Sbjct: 533 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 592

Query: 365 MPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           MP + + A  W +LL  S IH   ++     + LI + P   S YV++AN+ S  G WD+
Sbjct: 593 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 652

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
             EVR+ MK++ VRKE G SWIE   +VH F+AGD  H ++E +   L  L E   + GY
Sbjct: 653 ATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGY 712

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           VP    +LHNV + EK   L  HSEKLA+AFG+++ +P G  +R+ KNLR+C DCH + K
Sbjct: 713 VPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSP-GTIIRVAKNLRVCNDCHLATK 771

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +IS++V+REI++RDV R+HRF NG+C+CGD W
Sbjct: 772 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 158/364 (43%), Gaps = 17/364 (4%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRH 90
           ++ N L+  Y K        ++F+ I   N VSW +LIS+        ++L  F  ML  
Sbjct: 47  TVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDE 106

Query: 91  PTLSFLPNQRTLASLFKTCASLS--HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
              +  P+  TL S+   C++L      + G  +H+  L+       F  + LV  Y + 
Sbjct: 107 ---NVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKL 162

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               ++K +      RD+V +  ++    QN +L+++L    +M    V    + +S  L
Sbjct: 163 GKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 222

Query: 209 RAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
            A + L  +   + +H +A+ +G LD N  VG+ L+D Y     V   RRVFD       
Sbjct: 223 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 282

Query: 268 SIAWNAMMAGYAQ-QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
            + WNAM+AGY+Q + D+  +L    + E  G   +  +   V+ A   +G     E  I
Sbjct: 283 GL-WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEA-I 340

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS---FSAI 383
               V+  L+        L+    R G+++ A RI   M  + D   W  +++   FS  
Sbjct: 341 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEH 399

Query: 384 HGKA 387
           H  A
Sbjct: 400 HEDA 403


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 303/548 (55%), Gaps = 19/548 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNS---PLSLNIFLSML 88
           YN +I+ Y    L   +L +   + S  I     ++ ++I A +N+    L   +   +L
Sbjct: 254 YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVL 313

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R    SF  +  +L +L+  C   + A        ++  K+   D     +AL+  Y   
Sbjct: 314 RREDFSFHFDN-SLVTLYYKCGKFNEA-------RAIFEKMPAKDL-VSWNALLSGYVSS 364

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
                AK +F E++E++++ +  MI G A+N    + L +F+ M+        Y  SGA+
Sbjct: 365 GHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAI 424

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           ++ A L A    +  H   V  G D ++  G  LI  Y K G+V +A++VF   +  L+S
Sbjct: 425 KSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVF-RTMPCLDS 483

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WNA++A   Q G     ++++  +  +G  PD  +FL VLTA  +AGL  +  K+   
Sbjct: 484 VSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNS 543

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M+  Y++ PG +HY  LI  + R+G+  +AE I  ++PF+P A +W ALLS   +HG  +
Sbjct: 544 METVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNME 603

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +      +L  + P  D  Y++++N+ +  G+W+EVA VRK+M+DR V+KE   SWIE++
Sbjct: 604 LGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEME 663

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV-GDREKREALWYHS 507
            +VH FL  D  H   E +Y  L +L +E  RLGYVP    +LH+V  D  K + L  HS
Sbjct: 664 TQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHS 723

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           EK+A+AFGL+   P G T+RI KNLR C DCH  F+++S+VV+R+I++RD  R+H F NG
Sbjct: 724 EKIAVAFGLMK-LPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNG 782

Query: 568 SCTCGDLW 575
            C+CG+ W
Sbjct: 783 ECSCGNFW 790



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 120/519 (23%), Positives = 197/519 (37%), Gaps = 130/519 (25%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH   +    Q    I N LI  Y KS+ L Y+ +LF+ I  P+ ++ T ++S +  S
Sbjct: 34  RAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCAS 93

Query: 78  -------------PLSL-----------------------NIFLSMLRHPTLSFLPNQRT 101
                        P+S+                       N+F  M +H    F P+  T
Sbjct: 94  GDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKM-KHE--GFKPDDFT 150

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN----AKKV 157
            AS+    A +       +  H+ +LK          +ALV  YSR  S  +    A+KV
Sbjct: 151 YASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKV 210

Query: 158 FDEIRERD--------------------------------VVCYGAMIVGFAQNSRLVDS 185
           FD+I E+D                                +V Y AMI G+       ++
Sbjct: 211 FDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEA 270

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           L +   M SS +    +     +RA A    ++  + +H + V+   D +      L+  
Sbjct: 271 LEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAY-VLRREDFSFHFDNSLVTL 329

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY--------------------------- 278
           Y K G  ++AR +F E +   + ++WNA+++GY                           
Sbjct: 330 YYKCGKFNEARAIF-EKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIM 388

Query: 279 ----AQQGDQSTVLELFHLLEMRGFAPDEYSF------LAVLTALCNAGLAGESEKWIER 328
               A+ G     L+LF  ++  GF P +Y+F       AVL A CN        +    
Sbjct: 389 ISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG-------QQFHA 441

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA- 387
             V+   +  L     LI+   + G +E+A+++   MP   D+  W AL++    HG   
Sbjct: 442 QLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-LDSVSWNALIAALGQHGHGV 500

Query: 388 ---DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
              D+  +M K+   I P D   ++ V    S  G  D+
Sbjct: 501 EAVDVYEEMLKK--GIRP-DRITFLTVLTACSHAGLVDQ 536



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 130/316 (41%), Gaps = 17/316 (5%)

Query: 23  ARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           ARA+  K    D   +N L++ Y  S  +  +  +F  +   NI+SW  +IS  + +   
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
              L +F  M R     F P     +   K+CA L  A+  G   H+  +K+        
Sbjct: 399 EEGLKLFSCMKRE---GFEPCDYAFSGAIKSCAVLG-AYCNGQQFHAQLVKIGFDSSLSA 454

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  Y++    + A++VF  +   D V + A+I    Q+   V+++ V+ +M    +
Sbjct: 455 GNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGI 514

Query: 198 GSTMYCVSGALRAAAELAAMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                     L A +    ++Q R   +    V  +         LID   ++G  S+A 
Sbjct: 515 RPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAE 574

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            + +       +  W A+++G    G+    L +    ++ G  P+      +L+ +  A
Sbjct: 575 SIIESLPFKPTAEIWEALLSGCRVHGNME--LGIIAADKLFGLIPEHDGTYMLLSNMYAA 632

Query: 317 GLAGESEKWIERMKVR 332
                + +W E  +VR
Sbjct: 633 -----TGQWEEVARVR 643



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 100/208 (48%), Gaps = 24/208 (11%)

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDEN-LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           I  T ++ GY  +G ++ AR VF+E  +S+ +++ +NAM+ G++   D  + + LF  ++
Sbjct: 81  IARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMK 140

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT----CLISAMGR 351
             GF PD++++ +VL  L    L  + EK   +      L+ G  + T     L+S   R
Sbjct: 141 HEGFKPDDFTYASVLAGL---ALVVDDEKQCVQFHAA-ALKSGAGYVTSVSNALVSVYSR 196

Query: 352 AGR----LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
                  L  A ++   +P E D   W  +++    +G  D+  ++ K +      D++ 
Sbjct: 197 CASSPSLLHSARKVFDDIP-EKDERSWTTMMTGYVKNGCFDLGKELLKGM------DENM 249

Query: 408 YVIVAN-VLSG---VGRWDEVAEVRKVM 431
            ++  N ++SG    G + E  E+ + M
Sbjct: 250 KLVAYNAMISGYVNCGLYQEALEMVRRM 277


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/580 (33%), Positives = 321/580 (55%), Gaps = 35/580 (6%)

Query: 1   MALDLNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSK-SNLLSYSLRLFNH 58
           +ALDL +Q            +H+R + +  + D S+ N+L+  Y K SN++  ++R F  
Sbjct: 331 LALDLGKQ------------IHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRG 378

Query: 59  IPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115
           I SPN++SWT+LI+  S   L   S+ +F +M     +   PN  TL+++   C ++  +
Sbjct: 379 IASPNVISWTSLIAGFSEHGLEEESIKVFGAM---QGVGVRPNSFTLSTILGACGTIK-S 434

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
                 LH   +K +  +    G+ALV  Y+     D+A  V   ++ RDV+ Y ++   
Sbjct: 435 LTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATR 494

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
             Q      +L++   M   DV    + ++  L AAA +  ME  + +H ++V SGL   
Sbjct: 495 INQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSW 554

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           + V  GL+D YGK G + DA R F E ++  ++++WN ++ G A  G  S+ L  F  + 
Sbjct: 555 ISVSNGLVDLYGKCGCIHDAHRSFLE-ITEPDAVSWNGLIFGLASNGHVSSALSAFEDMR 613

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
           + G  PD+ + L VL A  + GL      + + M+ ++ + P L+HY CL+  +GRAGRL
Sbjct: 614 LAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRL 673

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
           E+A  +   MPF+PDA +++ LL    +HG   +   M ++ ++++P D + YV++AN+ 
Sbjct: 674 EEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLY 733

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
              GR +   + R++M++R VRK  G+SW+E +  VH+F AGD  H +   I+ K+  L+
Sbjct: 734 DDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLI 793

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
            +    G   +W          ++  AL +HSEKLA+AFGL+S  P+   +RI+KN+RIC
Sbjct: 794 AQFRNQG---IW---------YQENRALAHHSEKLAVAFGLISTPPKAP-IRIIKNIRIC 840

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           RDCH+    ++R+V+REI+VRD NR+H F  G C+C   W
Sbjct: 841 RDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW 880



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 196/419 (46%), Gaps = 15/419 (3%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH- 74
           D   +H+  +K   Q D  + NNL++ Y K   ++ + +LF+ +P  ++ SWT L+SA+ 
Sbjct: 33  DGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYG 92

Query: 75  --SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
              N   +L +F SML        PN+ TL++  ++C++L   F  G    +L  K    
Sbjct: 93  KIGNHEEALELFDSMLISGE---YPNEFTLSTALRSCSALRE-FNHGTRFQALVTKSGFD 148

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
             P  GSAL+ FYS+      A +VF+ +   D+V +  M+  F +      +L ++  M
Sbjct: 149 SNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRM 208

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             + V    +     L AA+    +   +++H H ++  ++ N+++ T L+D Y K   +
Sbjct: 209 IQTGVAPNEFTFV-KLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSI 267

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DA +V    L   +   W A+++G+ Q       +  FH +E  G  P+ +++  +L A
Sbjct: 268 EDAVKVSKLTLE-YDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNA 326

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA-MGRAGRLEDAERIAMAMPFEPDA 371
            C++ LA +  K I    V   LE  +     L+   M  +  +EDA R    +   P+ 
Sbjct: 327 -CSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIA-SPNV 384

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             W +L++  + HG  + + K+   +  +    +S    ++ +L   G    + + RK+
Sbjct: 385 ISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNS--FTLSTILGACGTIKSLTQTRKL 441



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 192/410 (46%), Gaps = 31/410 (7%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSF 95
           LI  YSK      + R+F ++ + +IVSWT ++S+   +     +L ++  M++      
Sbjct: 157 LIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQ---TGV 213

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            PN+ T   L    + L     +G  +H+  +   +       +ALV  Y + +S ++A 
Sbjct: 214 APNEFTFVKLLAASSFL--GLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAV 271

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           KV     E DV  + A+I GF Q+ +  ++++ F +M +S V    +  SG L A + + 
Sbjct: 272 KVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSIL 331

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-AGIVSDARRVFDENLSVLNSIAWNAM 274
           A++  + IH   V++GL+ +V VG  L+D Y K + ++ DA R F   ++  N I+W ++
Sbjct: 332 ALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAF-RGIASPNVISWTSL 390

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           +AG+++ G +   +++F  ++  G  P+ ++   +L A C    +    + +    ++  
Sbjct: 391 IAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGA-CGTIKSLTQTRKLHGYIIKNN 449

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA---- 390
            +  +     L+ A    G ++DA  +   M    D   + +L +     G  +MA    
Sbjct: 450 ADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHR-DVITYTSLATRINQTGNHEMALNII 508

Query: 391 SKMGKRLIDINPYDDSAYVIVA---------------NVLSGVGRWDEVA 425
           + M K  + ++ +  ++++  A               +V SG+G W  V+
Sbjct: 509 THMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVS 558



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 143/295 (48%), Gaps = 7/295 (2%)

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASL--SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
           M+   T+S +P+ +   SL K   S   S +   G+ +HS  +K+   +  F  + L+  
Sbjct: 1   MIWRTTVSKIPS-KIEYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSL 59

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           Y +      A+++FDE+  RDV  +  ++  + +     ++L +F  M  S      + +
Sbjct: 60  YGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTL 119

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           S ALR+ + L               SG D N ++G+ LID Y K G   +A RVF E ++
Sbjct: 120 STALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVF-EYMN 178

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             + ++W  M++ + + G  S  L+L+H +   G AP+E++F+ +L A    GL     K
Sbjct: 179 NGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGL--NYGK 236

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +    + +++E  L   T L+    +   +EDA +++  +  E D  +W A++S
Sbjct: 237 LVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVS-KLTLEYDVFLWTAIIS 290


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/537 (34%), Positives = 301/537 (56%), Gaps = 3/537 (0%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           + T  S S  +SY+  +F  I +PN+ +W  +I  ++ S      FL   +       P+
Sbjct: 58  IFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPD 117

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
             T   L K   S S     G ++HS++++       F  ++L+H Y+     ++A KVF
Sbjct: 118 THTYPFLLKAI-SKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVF 176

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
           + ++ERD+V + +MI GFA N R  ++L++F +M    V    + V   L A+AEL A+E
Sbjct: 177 ELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALE 236

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
             R +H + +  GL +N  V   L+D Y K G + +A+RVF E +S  N+++W +++ G 
Sbjct: 237 LGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSE-MSERNAVSWTSLIVGL 295

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A  G     LELF  +E +G  P E +F+ VL A  + G+  E  ++  RMK    + P 
Sbjct: 296 AVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPR 355

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           +EHY C++  + RAG ++ A      MP +P+A +WR LL    IHG   +       L+
Sbjct: 356 IEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLL 415

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
           ++ P     YV+++N+ +   RW +V  +R+ M    V+K  G S +E+  +V+ F  GD
Sbjct: 416 NLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGD 475

Query: 459 RMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVS 518
           R H +++D+Y  L ++ E  +  GYVP    +L ++ + EK +AL YHSEK+A+AF L++
Sbjct: 476 RSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLN 535

Query: 519 GAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             P G  +R++KNLR+C DCH + K I+++ +REIV+RD +R+H F  GSC+C D W
Sbjct: 536 -TPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/539 (34%), Positives = 302/539 (56%), Gaps = 3/539 (0%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N +I  Y     L  +  LF+ +P  N+ +W A+++  +   ++    L   R   LSF+
Sbjct: 139 NIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFM 198

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P++ +L S+ + CA L  A L G  +H+  +K         G +L H Y +  S  + ++
Sbjct: 199 PDEYSLGSVLRGCAHLG-ALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGER 257

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           V + + +  +V +  ++ G AQ       L  +  M+ +            + + +ELA 
Sbjct: 258 VINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAI 317

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           + Q + IH  AV +G    V V + L+  Y + G + D+ + F E     + + W++M+A
Sbjct: 318 LCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLE-CKERDVVLWSSMIA 376

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
            Y   G     ++LF+ +E      +E +FL++L A  + GL  +     + M  +Y L+
Sbjct: 377 AYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLK 436

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
             L+HYTCL+  +GR+G LE+AE +  +MP + DA +W+ LLS   IH  A++A ++   
Sbjct: 437 ARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADE 496

Query: 397 LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLA 456
           ++ I+P D ++YV++AN+ S   RW  V+EVR+ MKD+ V+KE G SW+EVK +VH F  
Sbjct: 497 VLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHM 556

Query: 457 GDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGL 516
           GD  H +  +I   L EL  E +R GYVP    +LH++ + EK + L +HSEKLA+AF L
Sbjct: 557 GDECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFAL 616

Query: 517 VSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++  P G  +R++KNLR+C DCH + KYIS + + EI+VRD +R+H F NG+C+CGD W
Sbjct: 617 MN-TPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 161/356 (45%), Gaps = 36/356 (10%)

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF----------- 148
           R  ++L + C  L    L G  LHSL          F  + L++ YS+F           
Sbjct: 70  RLFSNLLQACIPLKSVSL-GKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFD 128

Query: 149 RSP--------------------DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
           R P                    ++AK +FDE+ +R+V  + AM+ G  +     ++L +
Sbjct: 129 RMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLL 188

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           F+ M         Y +   LR  A L A+   + +H + +  G + N++VG  L   Y K
Sbjct: 189 FSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMK 248

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
           AG + D  RV +  +   + +AWN +M+G AQ+G    VL+ + +++M GF PD+ +F++
Sbjct: 249 AGSMHDGERVINW-MPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVS 307

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           V+++     +  +  K I    V+      +   + L+S   R G L+D+ +  +    E
Sbjct: 308 VISSCSELAILCQG-KQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECK-E 365

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDE 423
            D  +W ++++    HG+ + A K+   +   N P ++  ++ +    S  G  D+
Sbjct: 366 RDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDK 421


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 293/556 (52%), Gaps = 4/556 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H+  +K+  Q+D  +   LI  YSK   L  + R+ + I   ++VSWT++I+ +     
Sbjct: 367 IHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEF 426

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 +          P+   LAS    CA +  A   G  +H+              +
Sbjct: 427 CKEALETFKEMQACGIWPDNIGLASAISACAGIK-AVHQGSQIHARVYVSGYSADVSIWN 485

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            LV+ Y+R      A   F+ I  ++ + +  +I GFAQ+    ++L VF  M  +    
Sbjct: 486 GLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKY 545

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            ++    ++ A+A LA ++Q + IH   + +G      +   LI  YGK G + DA+  F
Sbjct: 546 NVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDF 605

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E ++  N ++WN ++   +Q G     L+LF  ++ +G  P + +F+ VLTA  + GL 
Sbjct: 606 FE-MTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLV 664

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E   + + M   + + P  +HY C++  +GRAG+L+ A+R    MP   D+ VWR LLS
Sbjct: 665 EEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLS 724

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +H   ++     K L+++ P+D ++YV+++N  +  G+W    ++RK+MKDR VRKE
Sbjct: 725 ACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKE 784

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            GRSWIEVK  VH F  GDR+H   + IY  L+ L +   ++GY      + H      K
Sbjct: 785 PGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGK 844

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
               + HSEKLA+AFGL+S  P    LR++KNLR+C DCH   K+ S V+ REIV+RDV 
Sbjct: 845 DPTAFVHSEKLAVAFGLMS-LPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVY 903

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F NGSC+CGD W
Sbjct: 904 RFHHFNNGSCSCGDYW 919



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 196/412 (47%), Gaps = 20/412 (4%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---N 76
           +H+  LK+  + D  +  +L+  Y KS  +  +L++F+     N+V W  ++ A+    +
Sbjct: 266 LHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDD 325

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S +IF  ML        PN+ T   + +TC       L G  +HSL++K       +
Sbjct: 326 LAKSFDIFYRML---AAGVRPNKFTYPCMLRTCTHTGEIGL-GEQIHSLTIKNGFQSDMY 381

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
               L+  YS++   D A+++ D I E+DVV + +MI G+ Q+    ++L  F +M++  
Sbjct: 382 VSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACG 441

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      ++ A+ A A + A+ Q   IH    VSG   +V +  GL+  Y + GI  +A 
Sbjct: 442 IWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAF 501

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             F E +     I WN +++G+AQ G     L++F  ++  G   + ++F++ ++A  N 
Sbjct: 502 SSF-EAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANL 560

Query: 317 GLAGESEKWIER-MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
               + ++   R +K  Y  E   E    LIS  G+ G +EDA+     M  + +   W 
Sbjct: 561 ADIKQGKQIHARVIKTGYTSET--EISNALISLYGKCGSIEDAKMDFFEMT-KRNEVSWN 617

Query: 376 ALLSFSAIHGKA----DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            +++  + HG+     D+  +M ++   + P  D  +V V    S VG  +E
Sbjct: 618 TIITCCSQHGRGLEALDLFDQMKQQ--GLKP-SDVTFVGVLTACSHVGLVEE 666



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 173/363 (47%), Gaps = 11/363 (3%)

Query: 21  VHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA+A+    +   I  NL+ + Y+K   +  + R+F  +   + VSW A++S ++ + L
Sbjct: 64  IHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGL 123

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++ ++  M R      +P    L+S+   C   +  F  G  +H    K     + F
Sbjct: 124 GEEAVRLYREMHRS---GVVPTPYVLSSILSACTK-TELFQLGRLIHVQVYKQGFFSETF 179

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+AL+  Y R RS   A +VF ++   D V +  +I G AQ      +L +F +M+ S 
Sbjct: 180 VGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSG 239

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      ++  L A + +  + + + +H + + +G+  + I+   L+D Y K+G + +A 
Sbjct: 240 LSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEAL 299

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           ++FD      N + WN M+  Y Q  D +   ++F+ +   G  P+++++  +L    + 
Sbjct: 300 QIFDSG-DRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHT 358

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G  G  E+ I  + ++   +  +     LI    + G L+ A+RI + M  E D   W +
Sbjct: 359 GEIGLGEQ-IHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRI-LDMIEEKDVVSWTS 416

Query: 377 LLS 379
           +++
Sbjct: 417 MIA 419


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 319/560 (56%), Gaps = 11/560 (1%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HAR +KS + +D  I + L++ Y K      + RLF+ +P+ ++VSW +L+S  S    
Sbjct: 161 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGY 220

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               LN F  M         PN+ TL S+   CA +  A   G SLH + +KL +  K  
Sbjct: 221 LGACLNAFCRMRTESGRQ--PNEVTLLSVVSACAXMG-ALDEGKSLHGVVVKLGMSGKAK 277

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L++ Y +    D A ++F+E+  R +V + +M+V    N      + +F  M+ + 
Sbjct: 278 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 337

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      +   LRA  +     Q   IH +    G + ++I+ T L++ Y K G ++ + 
Sbjct: 338 INPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASE 397

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F+E +   ++IAW AM+AGYA        ++LF L+   G   D  +F  +L+A  ++
Sbjct: 398 DIFEE-IKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHS 456

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E +K+ E M   Y++EP L+HY+C++  +GR+GRLEDA  +  +MP EP + VW A
Sbjct: 457 GLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGA 516

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    ++G  ++  ++ ++L+ ++P D   Y++++N+ S  G W   ++VR +MK+RR+
Sbjct: 517 LLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRL 576

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            +  G S+IE   K+H F+ GD++H R+++I+TKL EL+ +    G  P  + +LH++ +
Sbjct: 577 TRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDE 636

Query: 497 REKREALWYHSEKLALAFG-LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
             K + +  HSEKLA+AFG LV+G+  G  L I KNLRIC DCH + K+ S + +R I++
Sbjct: 637 EVKVDMINKHSEKLAIAFGLLVTGS--GVPLIITKNLRICGDCHSTAKFASLLEKRTIII 694

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD  R+H F +G C+C D W
Sbjct: 695 RDSKRFHHFADGLCSCRDYW 714



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 158/323 (48%), Gaps = 8/323 (2%)

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           S++ ++   + +FL  L + +L      ++L     +C S+S+      ++H+  +K   
Sbjct: 115 SSNDSTRTKVAVFLGKLHNSSLLADSIVQSLVFAISSCTSVSYCS----AIHARVIKSLN 170

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           +   F G  LV  Y +    ++A+++FDE+  RD+V + +++ G +    L   L+ F  
Sbjct: 171 YSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCR 230

Query: 192 MRS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           MR+ S        +   + A A + A+++ + +HG  V  G+     V   LI+ YGK G
Sbjct: 231 MRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLG 290

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A ++F+E + V + ++WN+M+  +   G     ++LF+L++  G  PD+ + +A+L
Sbjct: 291 FLDAASQLFEE-MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALL 349

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  + GL  ++E  I     R      +   T L++   + GRL  +E I   +  + D
Sbjct: 350 RACTDTGLGRQAES-IHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRD 407

Query: 371 AAVWRALLSFSAIHGKADMASKM 393
              W A+L+  A+H     A K+
Sbjct: 408 TIAWTAMLAGYAVHACGREAIKL 430


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/579 (33%), Positives = 309/579 (53%), Gaps = 38/579 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D   +  +I  Y +++ L  +  L   +     V+W A+IS + +       F  + R  
Sbjct: 207 DEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMH 266

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL----SLHDKPFCGSALVHFYSR 147
           +L    ++ T  S+  + AS +  F  G  +H+  L+     S H      +AL+  Y+R
Sbjct: 267 SLGIQLDEYTYTSVI-SAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTR 325

Query: 148 FRSPDNAKKVFDEIRERDVVCYGA-------------------------------MIVGF 176
                 A++VFD++  +D+V + A                               MI G 
Sbjct: 326 CGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGL 385

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           AQN    + L +F  M+   +    Y  +GA+ + + L +++  + +H   +  G D ++
Sbjct: 386 AQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSL 445

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            VG  LI  Y + G+V  A  VF   +  ++S++WNAM+A  AQ G     ++L+  +  
Sbjct: 446 SVGNALITMYSRCGLVEAADTVF-LTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLK 504

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
               PD  +FL +L+A  +AGL  E   + + M+V Y + P  +HY+ LI  + RAG   
Sbjct: 505 EDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFS 564

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A+ +  +MPFEP A +W ALL+   IHG  ++  +   RL+++ P  D  Y+ ++N+ +
Sbjct: 565 EAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYA 624

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
            +G+WDEVA VRK+M++R V+KE G SWIEV+  VHVFL  D +H     +Y  L +L+ 
Sbjct: 625 ALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVH 684

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
           E  +LGYVP    +LH++   +K  AL  HSEKLA+ +G++   P G T+R+ KNLRIC 
Sbjct: 685 EMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMK-LPLGATIRVFKNLRICG 743

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH +FKYIS+VV+REI+VRD  R+H F NG C+C + W
Sbjct: 744 DCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 120/532 (22%), Positives = 206/532 (38%), Gaps = 122/532 (22%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           R VHA  L S  +    I N LI +Y KS  + Y+  LF+ IP P+IV+ T ++SA+S  
Sbjct: 16  RAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAA 75

Query: 76  -----------NSPLS-----------------------LNIFLSMLRHPTLSFLPNQRT 101
                       +P+S                       L +F+ M R   L F+P+  T
Sbjct: 76  GNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKR---LGFVPDPFT 132

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY-SRFRSP--------D 152
            +S+    + ++        LH    K      P   +AL+  Y S   SP         
Sbjct: 133 FSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMA 192

Query: 153 NAKKVFDE------------------IRERDV---------------VCYGAMIVGFAQN 179
            A+K+FDE                  +R  D+               V + AMI G+   
Sbjct: 193 AARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHR 252

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH---AVVSGLDRNV 236
               ++  +   M S  +    Y  +  + AA+        R +H +    VV      V
Sbjct: 253 GFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFV 312

Query: 237 I-VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA---------------------- 273
           + V   LI  Y + G + +ARRVFD+ + V + ++WNA                      
Sbjct: 313 LSVNNALITLYTRCGKLVEARRVFDK-MPVKDLVSWNAILSGCVNARRIEEANSIFREMP 371

Query: 274 ---------MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
                    M++G AQ G     L+LF+ +++ G  P +Y++   + A C+   + ++ +
Sbjct: 372 VRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAI-ASCSVLGSLDNGQ 430

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
            +    ++   +  L     LI+   R G +E A+ + + MP+  D+  W A+++  A H
Sbjct: 431 QLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY-VDSVSWNAMIAALAQH 489

Query: 385 GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           G    A ++ ++++  +   D   +    +LS       V E R      RV
Sbjct: 490 GHGVQAIQLYEKMLKEDILPDR--ITFLTILSACSHAGLVKEGRHYFDTMRV 539


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 317/572 (55%), Gaps = 22/572 (3%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS- 77
           +HA ALK+   D + +  + L+  Y     +    R+F+ +    I  W A+I+ +S + 
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383

Query: 78  --PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               +L +F+ M    +   L N  T+A +   C   S AF    ++H   +K  L    
Sbjct: 384 HDKEALLLFIGM--EESAGLLANSTTMAGVVPACVR-SGAFSRKEAIHGFVVKRGLDRDR 440

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  + L+  YSR    D A ++F ++ +RD+V +  MI G+  +    D+L +   M++ 
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 500

Query: 196 D-----------VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +           +      +   L + A L+A+ + + IH +A+ + L  +V VG+ L+D
Sbjct: 501 ERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G +  +R+VFD+ +   N I WN ++  Y   G+    ++L  ++ ++G  P+E 
Sbjct: 561 MYAKCGCLQMSRKVFDQ-IPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 619

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F++V  A  ++G+  E  +    MK  Y +EP  +HY C++  +GRAGR+++A ++   
Sbjct: 620 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 679

Query: 365 MPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           MP + + A  W +LL  S IH   ++     + LI + P   S YV++AN+ S  G WD+
Sbjct: 680 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 739

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
             EVR+ MK++ VRKE G SWIE   +VH F+AGD  H ++E +   L  L E   + GY
Sbjct: 740 ATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGY 799

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           VP    +LHNV + EK   L  HSEKLA+AFG+++ +P G  +R+ KNLR+C DCH + K
Sbjct: 800 VPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSP-GTIIRVAKNLRVCNDCHLATK 858

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +IS++V+REI++RDV R+HRF NG+C+CGD W
Sbjct: 859 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 158/364 (43%), Gaps = 17/364 (4%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRH 90
           ++ N L+  Y K        ++F+ I   N VSW +LIS+        ++L  F  ML  
Sbjct: 134 TVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDE 193

Query: 91  PTLSFLPNQRTLASLFKTCASLS--HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
              +  P+  TL S+   C++L      + G  +H+  L+       F  + LV  Y + 
Sbjct: 194 ---NVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKL 249

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               ++K +      RD+V +  ++    QN +L+++L    +M    V    + +S  L
Sbjct: 250 GKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 309

Query: 209 RAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
            A + L  +   + +H +A+ +G LD N  VG+ L+D Y     V   RRVFD       
Sbjct: 310 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369

Query: 268 SIAWNAMMAGYAQ-QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
            + WNAM+AGY+Q + D+  +L    + E  G   +  +   V+ A   +G     E  I
Sbjct: 370 GL-WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEA-I 427

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS---FSAI 383
               V+  L+        L+    R G+++ A RI   M  + D   W  +++   FS  
Sbjct: 428 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEH 486

Query: 384 HGKA 387
           H  A
Sbjct: 487 HEDA 490



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN-VIVGT 240
           L +++  + DM    +    Y     L+A A+L  ME  + IH H    G   + V V  
Sbjct: 78  LREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVAN 137

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            L++ Y K G      +VFD  +S  N ++WN++++           LE F  +      
Sbjct: 138 TLVNLYRKCGDFGAVYKVFDR-ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 196

Query: 301 PDEYSFLAVLTALCN 315
           P  ++ ++V+TA  N
Sbjct: 197 PSSFTLVSVVTACSN 211


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/556 (34%), Positives = 306/556 (55%), Gaps = 13/556 (2%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLS 86
           ++D  + + LI  YSK   LS +  LF+ IP  NIV+WT+LI+ +    ++  +L +F  
Sbjct: 114 ESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKE 173

Query: 87  MLRHPT------LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
            L   +      +    +   + S+   C+ +S+  +    +H +++K+ L       + 
Sbjct: 174 FLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAV-SEGVHGVAIKVGLDKVMGVENT 232

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS- 199
           L+  Y++      ++KVFD++ E+DVV + +MI  +AQN    D+  VF  M  +  G  
Sbjct: 233 LLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKY 292

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               +S  L A A   A+     +H   +  G   NVI+ T +ID Y K G    AR  F
Sbjct: 293 NEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAF 352

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D  +   N  +W AM+AGY   G     L++F+ +   G  P+  +F++VL A  +AG  
Sbjct: 353 D-GMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFL 411

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E  +W   M   Y +EPG+EHY C++  +GRAG +++A  +  +M    D  +W +LL+
Sbjct: 412 EEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLA 471

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IH   ++A    + L  ++P +   YV++AN+ +  GRW +V  +R ++KDR + K 
Sbjct: 472 ACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKP 531

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S +E+KG+VHVFL GD+ H + E IY  L EL  + +  GYVP    +LH+V + EK
Sbjct: 532 PGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEK 591

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              +  HSEKLA+AFG+++  P G T+ ++KNLR+C DCH   K IS++V REI+VRD  
Sbjct: 592 EMIVRVHSEKLAVAFGVMNSIP-GSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAK 650

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 651 RFHHFKDGLCSCGDYW 666



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 124/278 (44%), Gaps = 20/278 (7%)

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGF 176
           + +SL  L++   +H   F  +A         +  N   +F++  +R DV  + ++I   
Sbjct: 5   YTISLQLLTISFKIHKNHFSTTAAA-------TNTNLTTLFNKYFDRTDVYSWNSLIAEL 57

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           A+     +SL  F+ MR  D+         A+++ + L  +   +  H  A+V G + ++
Sbjct: 58  ARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDL 117

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-- 294
            V + LID Y K G +S+AR +FDE +   N + W +++ GY Q  D    L +F     
Sbjct: 118 FVSSALIDMYSKCGKLSNARVLFDE-IPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLF 176

Query: 295 -------EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
                  E  G + D  + ++VL+A         SE  +  + ++  L+  +     L+ 
Sbjct: 177 EKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEG-VHGVAIKVGLDKVMGVENTLLD 235

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           A  + G +  + ++   M  E D   W ++++  A +G
Sbjct: 236 AYAKCGEVSLSRKVFDDMA-EKDVVSWNSMIAVYAQNG 272


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 190/560 (33%), Positives = 297/560 (53%), Gaps = 10/560 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+K  +  D  +  +    Y K+ L   + +LF+ IP  N+ +W A IS       
Sbjct: 130 IHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGR 189

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF--GLSLHSLSLKLSLHDKPFC 137
                 + +    +   PN  T       C   S   L   G+ +H L  +         
Sbjct: 190 PKEAIEAFIEFRRIGGQPNSITFCGFLNAC---SDGLLLDLGMQMHGLVFRSGFDTDVSV 246

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + L+ FY + +   +++ +F E+  ++ V + +++  + QN     +  ++   R   V
Sbjct: 247 YNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIV 306

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            ++ + +S  L A A +A +E  R IH HAV + ++RN+ VG+ L+D YGK G + D+ +
Sbjct: 307 ETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQ 366

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF--APDEYSFLAVLTALCN 315
            FDE +   N +  N+++ GYA QG     L LF  +  RG   AP+  +F+++L+A   
Sbjct: 367 AFDE-MPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSR 425

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AG      K  + MK  Y +EPG EHY+C++  +GRAG +E A      MP +P  +VW 
Sbjct: 426 AGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWG 485

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           AL +   +HGK  +     + L  ++P D   +V+++N  +  GRW E   VR+ MK   
Sbjct: 486 ALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVG 545

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           ++K  G SWI VK +VH F A DR H+  ++I T L +L  + E  GY P     L+++ 
Sbjct: 546 IKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLE 605

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + EK   + +HSEKLALAFGLV+  P    +RI KNLRIC DCH  FK++S  V+REI+V
Sbjct: 606 EEEKAAEVSHHSEKLALAFGLVA-LPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIV 664

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+HRF +G C+C D W
Sbjct: 665 RDNNRFHRFKDGICSCKDYW 684



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 200/423 (47%), Gaps = 22/423 (5%)

Query: 19  RIVHARALKS--SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+VHAR +K+  S     + N LI  YSK +    +  +    P+ N+VSWT+L+S  + 
Sbjct: 26  RVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQ 85

Query: 77  S---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +     +L  F  M R       PN  T   +FK  ASL    + G  +H+L++K     
Sbjct: 86  NGHFSTALFEFFEMRRE---GVAPNDFTFPCVFKAVASLRLP-VTGKQIHALAVKCGRIL 141

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F G +    Y + R  D+A+K+FDEI ER++  + A I     + R  +++  F + R
Sbjct: 142 DVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFR 201

Query: 194 --SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
                  S  +C  G L A ++   ++    +HG    SG D +V V  GLID YGK   
Sbjct: 202 RIGGQPNSITFC--GFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQ 259

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQ--QGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           +  +  +F E + + N+++W +++A Y Q  + ++++VL L    E+      ++   +V
Sbjct: 260 IRSSEIIFAE-MGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEI--VETSDFMISSV 316

Query: 310 LTALCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           L+A   AG+AG E  + I    V+  +E  +   + L+   G+ G +ED+E+    MP E
Sbjct: 317 LSAC--AGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMP-E 373

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
            +     +L+   A  G+ DMA  + + +          Y+   ++LS   R   V    
Sbjct: 374 KNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGM 433

Query: 429 KVM 431
           K+ 
Sbjct: 434 KIF 436


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 312/563 (55%), Gaps = 13/563 (2%)

Query: 19  RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP--NIVSWTALISAHS 75
           R VHA+  +   +AD  + N LI  Y+K   L  +  +F  +P P   IVSWTA++SA++
Sbjct: 139 RFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 76  NS--PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            +  P+ +L IF  M +   +   P+   L S+      L      G S+H+  +K+ L 
Sbjct: 199 QNGEPVEALEIFSQMRK---MDVKPDCVALVSVLNAFTCLQD-LEQGRSIHASVMKMGLE 254

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            +P    +L   Y++      AK +FD+++  +++ + AMI G+A+N    D++ +F +M
Sbjct: 255 TEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEM 314

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            + DV      ++ A+ A A++ ++EQ R +  +   S    +V + + LID + K G V
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSV 374

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD  L   + + W+AM+ GY   G     + L+  +E  G  P++ +FL +L A
Sbjct: 375 ECARSVFDRTLD-RDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIA 433

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++G+  E   +  RM   +K+ P  +HY C+I  +GRAG L+ A  +   MP +P   
Sbjct: 434 CNHSGMVREGWWFFNRM-ADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVT 492

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALLS    H   ++     ++L  I+P +   YV ++N+ +    WD VAEVR  MK
Sbjct: 493 VWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMK 552

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           ++ + K+ G SW+EV+G++  F  GD+ H R E+I  ++  +    +  G+V   D  LH
Sbjct: 553 EKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLH 612

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ D E  E L  HSE++ +A+GL+S  P+G TLRI KNLR C +CH + K IS++V RE
Sbjct: 613 DLNDEEAEETLCSHSERITIAYGLIS-TPQGTTLRITKNLRACVNCHAATKLISKLVGRE 671

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H F +G C+CGD W
Sbjct: 672 IVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 170/372 (45%), Gaps = 7/372 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HAR L    Q    +   LI   S    ++++ ++F+ +P P +  W A+I  +S +
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
               +  L   +       P+  T   L K C  LSH    G  +H+   +L      F 
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSH-LQMGRFVHAQVFRLGFEADVFV 156

Query: 138 GSALVHFYSRFRSPDNAKKVFD--EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            + L+  Y++ R    A+ VF+   + ER +V + A++  +AQN   V++L +F+ MR  
Sbjct: 157 QNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKM 216

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           DV      +   L A   L  +EQ R IH   +  GL+    +   L   Y K G V+ A
Sbjct: 217 DVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATA 276

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           + +FD+ +   N I WNAM++GYA+ G     ++LFH +  +   PD  S  + ++A   
Sbjct: 277 KILFDK-MKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQ 335

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            G + E  +W++    R      +   + LI    + G +E A R       + D  VW 
Sbjct: 336 VG-SLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECA-RSVFDRTLDRDVVVWS 393

Query: 376 ALLSFSAIHGKA 387
           A++    +HG+A
Sbjct: 394 AMIVGYGLHGQA 405



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 7/285 (2%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H+  L L L    F  + L+H  S +     A++VFD++    V  + A+I G+++N+ 
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNH 99

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
             D+L +++ M+ + V    +     L+A   L+ ++  R +H      G + +V V  G
Sbjct: 100 FQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNG 159

Query: 242 LIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
           LI  Y K   +  AR VF+   L     ++W A+++ YAQ G+    LE+F  +      
Sbjct: 160 LIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVK 219

Query: 301 PDEYSFLAVLTAL-CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
           PD  + ++VL A  C   L          MK+  + EP L     L +   + G++  A+
Sbjct: 220 PDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDL--LISLNTMYAKCGQVATAK 277

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINP 402
            +   M   P+  +W A++S  A +G A  A  +   +I  D+ P
Sbjct: 278 ILFDKMK-SPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRP 321



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 10/203 (4%)

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           Q R IH   +V GL  +  + T LI      G ++ AR+VFD+ L       WNA++ GY
Sbjct: 36  QLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDD-LPRPQVFPWNAIIRGY 94

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           ++       L ++  +++   +PD ++F  +L A C      +  +++     R   E  
Sbjct: 95  SRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKA-CGGLSHLQMGRFVHAQVFRLGFEAD 153

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV-WRALLSFSAIHGKA----DMASKM 393
           +     LI+   +  RL  A  +   +P      V W A++S  A +G+     ++ S+M
Sbjct: 154 VFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQM 213

Query: 394 GKRLIDINPYDDSAYVIVANVLS 416
             R +D+ P D  A V V N  +
Sbjct: 214 --RKMDVKP-DCVALVSVLNAFT 233


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 206/627 (32%), Positives = 328/627 (52%), Gaps = 81/627 (12%)

Query: 22  HARALKSSQ-ADRSIYNNLITNY---SKSNLLSY--SLRLFNHIPSPNIVSWTALISA-- 73
           HA  L++    D  I  +L+ +Y   S +  LS+  SLR+F+ +  PN+  W  +I    
Sbjct: 55  HALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCI 114

Query: 74  HSNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS--------HAFL----FGL 120
            +N P  ++ ++  M+        PN+ T  ++ K C+           HA L     G 
Sbjct: 115 ENNEPFKAILLYYEMV---VAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGG 171

Query: 121 SLHSLSLKLSLH--------------DK-----PFCGSALVHFYSRFRS----------- 150
             H LS  + ++              DK       C +A++  Y RF             
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 231

Query: 151 PDN---------------------AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
           PD                      A++ FDE++ERD + + AMI G+ Q    +++L +F
Sbjct: 232 PDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIF 291

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
             M+   +    + +   L A A L A++Q R IH +A  + +  + ++GT L+D Y K 
Sbjct: 292 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 351

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  A  VF E +S     +WNAM+ G A  G     ++LF  +++    P+E +F+ V
Sbjct: 352 GRIDLAWEVF-EKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIY---PNEITFVGV 407

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  + GL  +       M+  Y +EP +EHY C++  +GRAG L +AE++  ++P EP
Sbjct: 408 LNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEP 467

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
             AVW ALL     HG  ++  ++GK L+++ P +   Y +++N+ +  GRW+EV EVRK
Sbjct: 468 TPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRK 527

Query: 430 VMKDRRVRKEGGRSWIEV-KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
           +MK+R ++   G S I++ +G+VH F+ GD  H + +DIY  L ++ E  +  GY P   
Sbjct: 528 LMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPS 587

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
           ++L ++ + EK  A+W HSEKLA+ FGL++ +P G T+RIVKNLR+C DCH + K IS+V
Sbjct: 588 QVLFDIDEEEKETAVWQHSEKLAIGFGLINTSP-GTTIRIVKNLRVCEDCHSATKLISQV 646

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
             REI+VRD  RYH F NG+C+C D W
Sbjct: 647 YNREIIVRDRIRYHHFRNGACSCKDFW 673


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/543 (35%), Positives = 300/543 (55%), Gaps = 10/543 (1%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTL 93
           N LI  Y ++  L  + ++F+ +P   + +W A+I+       +   L++F  M     L
Sbjct: 29  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM---HGL 85

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            F P++ TL S+F   A L  +   G  +H  ++K  L       S+L H Y R     +
Sbjct: 86  GFSPDEYTLGSVFSGSAGL-RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 144

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
            + V   +  R++V +  +I+G AQN      L ++  M+ S            L + ++
Sbjct: 145 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 204

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           LA   Q + IH  A+  G    V V + LI  Y K G + DA + F E     + + W++
Sbjct: 205 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE-DEVMWSS 263

Query: 274 MMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           M++ Y   G     +ELF+ + E      +E +FL +L A  ++GL  +  +  + M  +
Sbjct: 264 MISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEK 323

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y  +PGL+HYTC++  +GRAG L+ AE I  +MP + D  +W+ LLS   IH  A+MA +
Sbjct: 324 YGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQR 383

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
           + K ++ I+P D + YV++ANV +   RW +V+EVRK M+D+ V+KE G SW E KG+VH
Sbjct: 384 VFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVH 443

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
            F  GDR   ++++IY+ L EL  E +  GY P    +LH++ + EK   L  HSEKLA+
Sbjct: 444 QFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAV 503

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AF L+   P G  +RI+KNLR+C DCH +FKYIS +  REI +RD +R+H F+NG C+CG
Sbjct: 504 AFALMI-LPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCG 562

Query: 573 DLW 575
           D W
Sbjct: 563 DYW 565



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 5/153 (3%)

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           +N +    LI+GY +AG + +AR+VFDE +       WNAM+AG  Q       L LF  
Sbjct: 23  KNYMSSNILINGYVRAGDLVNARKVFDE-MPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 81

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
           +   GF+PDEY+  +V +   +AGL   S  + I    ++Y LE  L   + L     R 
Sbjct: 82  MHGLGFSPDEYTLGSVFSG--SAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRN 139

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           G+L+D E +  +MP   +   W  L+  +A +G
Sbjct: 140 GKLQDGEIVIRSMPVR-NLVAWNTLIMGNAQNG 171



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 80/175 (45%), Gaps = 6/175 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI--SAHSNS 77
           +H   +K   + D  + ++L   Y ++  L     +   +P  N+V+W  LI  +A +  
Sbjct: 113 IHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGC 172

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P ++     M++       PN+ T  ++  +C+ L+     G  +H+ ++K+        
Sbjct: 173 PETVLYLYKMMKISGCR--PNKITFVTVLSSCSDLAIRGQ-GQQIHAEAIKIGASSVVAV 229

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            S+L+  YS+     +A K F E  + D V + +MI  +  + +  +++ +F  M
Sbjct: 230 VSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTM 284


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/556 (32%), Positives = 299/556 (53%), Gaps = 40/556 (7%)

Query: 21  VHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H R + +   + +   N +T+ Y+K   +  +  LF+ +   N+VSW  +IS       
Sbjct: 177 IHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISG------ 230

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
               ++ M        L N+  L+ L     ++S+                         
Sbjct: 231 ----YVKMGNPNECIHLFNEMQLSGLKPDLVTVSN------------------------- 261

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            +++ Y R    D+A+ +F ++ ++D +C+  MIVG+AQN R  D+  +F DM   +V  
Sbjct: 262 -VLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKP 320

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             Y +S  + + A+LA++   +V+HG  VV G+D +++V + L+D Y K G+  DAR +F
Sbjct: 321 DSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIF 380

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E + + N I WNAM+ GYAQ G     L L+  ++   F PD  +F+ VL+A  NA + 
Sbjct: 381 -ETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMV 439

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E +K+ + +   + + P L+HY C+I+ +GR+G ++ A  +   MP EP+  +W  LLS
Sbjct: 440 KEGQKYFDSIS-EHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLS 498

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
             A  G    A      L +++P +   Y++++N+ +  GRW +VA VR +MK++  +K 
Sbjct: 499 VCA-KGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKF 557

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
              SW+EV  KVH F++ D  H     IY +L  L+   +++GY P  + +LHNVG+ EK
Sbjct: 558 AAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQQIGYNPDTNIVLHNVGEEEK 617

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             ++ YHSEKLALAF L+        +RI+KN+R+C DCH   K+ S  + R I++RD N
Sbjct: 618 FRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDCHVFMKFASITISRPIIMRDSN 677

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F  G C+C D W
Sbjct: 678 RFHHFFGGKCSCNDNW 693



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 144/323 (44%), Gaps = 34/323 (10%)

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           S + LN+F      P  SF+ NQ  L  L+     LS A        ++   ++  D  +
Sbjct: 46  SHMELNLF-----QPKDSFIHNQ--LLHLYAKFGKLSDA-------QNVFDNMTKRD-VY 90

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             + L+  Y++    +N   VFD++  RD V Y  +I  FA N     +L V   M+   
Sbjct: 91  SWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDG 150

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
              T Y    AL+A ++L  +   + IHG  VV+ L  N  V   + D Y K G +  AR
Sbjct: 151 FQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKAR 210

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +FD  +   N ++WN M++GY + G+ +  + LF+ +++ G  PD  +   VL A    
Sbjct: 211 LLFDGMIDK-NVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRC 269

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM---PFEPDAAV 373
           G   ++     ++  + ++      +T +I    + GR EDA  +   M     +PD+  
Sbjct: 270 GRVDDARNLFIKLPKKDEI-----CWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYT 324

Query: 374 WRALLSFSA----------IHGK 386
             +++S  A          +HGK
Sbjct: 325 ISSMVSSCAKLASLYHGQVVHGK 347



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 92/430 (21%), Positives = 173/430 (40%), Gaps = 74/430 (17%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D  I+N L+  Y+K   LS +  +F+++   ++ SW  L+SA++   +  N+ +   + P
Sbjct: 57  DSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMP 116

Query: 92  --------TL-----------------------SFLPNQRTLASLFKTCASLSHAFLFGL 120
                   TL                        F P Q +  +  + C+ L      G 
Sbjct: 117 YRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLD-LRHGK 175

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            +H   +   L +  F  +A+   Y++    D A+ +FD + +++VV +  MI G+ +  
Sbjct: 176 QIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMG 235

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              + + +F +M+                                   +SGL  +++  +
Sbjct: 236 NPNECIHLFNEMQ-----------------------------------LSGLKPDLVTVS 260

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            +++ Y + G V DAR +F + L   + I W  M+ GYAQ G +     LF  +  R   
Sbjct: 261 NVLNAYFRCGRVDDARNLFIK-LPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVK 319

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMK-VRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
           PD Y+  +++++   A LA      +   K V   ++  +   + L+    + G   DA 
Sbjct: 320 PDSYTISSMVSSC--AKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDAR 377

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419
            I   MP   +   W A++   A +G+   A  + +R+   N   D+  +    VLS   
Sbjct: 378 VIFETMPIR-NVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDN--ITFVGVLSACI 434

Query: 420 RWDEVAEVRK 429
             D V E +K
Sbjct: 435 NADMVKEGQK 444


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 195/554 (35%), Positives = 308/554 (55%), Gaps = 11/554 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           RIVHA  L+S  + D  + N L+  Y+K   L  + ++F  +P  + V+WT LIS +S  
Sbjct: 80  RIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQH 139

Query: 76  NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           + P  +L  F  MLR     + PN+ TL+S+ K  A+       G  LH   +K      
Sbjct: 140 DRPCDALLFFNQMLR---FGYSPNEFTLSSVIKAAAAERRGCC-GHQLHGFCVKCGFDSN 195

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              GSAL+  Y+R+   D+A+ VFD +  R+ V + A+I G A+ S    +L +F  M  
Sbjct: 196 VHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLR 255

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                + +  +    A +    +EQ + +H + + SG       G  L+D Y K+G + D
Sbjct: 256 DGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHD 315

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR++FD  L+  + ++WN+++  YAQ G     +  F  +   G  P+E SFL+VLTA  
Sbjct: 316 ARKIFDR-LAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++GL  E   + E MK +  + P   HY  ++  +GRAG L  A R    MP EP AA+W
Sbjct: 375 HSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIW 433

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           +ALL+   +H   ++ +   + + +++P D   +VI+ N+ +  GRW++ A VRK MK+ 
Sbjct: 434 KALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKES 493

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V+KE   SW+E++  +H+F+A D  H + E+I  K  E++ + + LGYVP    ++ +V
Sbjct: 494 GVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHV 553

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
             +E+   L YHSEK+ALAF L++  P G T+ I KN+R+C DCH + K  S+VV REI+
Sbjct: 554 DQQEREVNLQYHSEKIALAFALLNTPP-GSTIHIKKNIRVCGDCHTAIKLASKVVGREII 612

Query: 555 VRDVNRYHRFLNGS 568
           VRD NR+H F + S
Sbjct: 613 VRDTNRFHHFKDAS 626



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 170/344 (49%), Gaps = 12/344 (3%)

Query: 94  SFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           S++P ++R   +L K C ++    + G  +H+  L+         G+ L++ Y++  S +
Sbjct: 54  SYIPADRRFYNTLLKKC-TVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLE 112

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
            A+KVF+++ +RD V +  +I G++Q+ R  D+L  F  M         + +S  ++AAA
Sbjct: 113 EARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172

Query: 213 ELAAMEQC--RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
             A    C    +HG  V  G D NV VG+ L+D Y + G++ DA+ VFD  L   N ++
Sbjct: 173 --AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDA-LESRNDVS 229

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WNA++AG+A++      LELF  +   GF P  +S+ ++  A  + G   E  KW+    
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFL-EQGKWVHAYM 288

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           ++   +        L+    ++G + DA +I   +  + D   W +LL+  A HG    A
Sbjct: 289 IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHGFGKEA 347

Query: 391 SKMGK--RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
               +  R + I P ++ +++ V    S  G  DE     ++MK
Sbjct: 348 VWWFEEMRRVGIRP-NEISFLSVLTACSHSGLLDEGWHYYELMK 390



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 96/204 (47%), Gaps = 5/204 (2%)

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           F  N  L+ + S   D+  S + +     +  L+       + Q R++H H + S    +
Sbjct: 37  FPSNDLLLRTSS--NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHD 94

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           +++G  L++ Y K G + +AR+VF E +   + + W  +++GY+Q       L  F+ + 
Sbjct: 95  IVMGNTLLNMYAKCGSLEEARKVF-EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G++P+E++  +V+ A   A   G     +    V+   +  +   + L+    R G +
Sbjct: 154 RFGYSPNEFTLSSVIKAAA-AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM 212

Query: 356 EDAERIAMAMPFEPDAAVWRALLS 379
           +DA+ +  A+    D + W AL++
Sbjct: 213 DDAQLVFDALESRNDVS-WNALIA 235


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/543 (35%), Positives = 300/543 (55%), Gaps = 10/543 (1%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTL 93
           N LI  Y ++  L  + ++F+ +P   + +W A+I+       +   L++F  M     L
Sbjct: 27  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM---HGL 83

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            F P++ TL S+F   A L  +   G  +H  ++K  L       S+L H Y R     +
Sbjct: 84  GFSPDEYTLGSVFSGSAGL-RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 142

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
            + V   +  R++V +  +I+G AQN      L ++  M+ S            L + ++
Sbjct: 143 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 202

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           LA   Q + IH  A+  G    V V + LI  Y K G + DA + F E     + + W++
Sbjct: 203 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE-DEVMWSS 261

Query: 274 MMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           M++ Y   G     +ELF+ + E      +E +FL +L A  ++GL  +  +  + M  +
Sbjct: 262 MISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEK 321

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y  +PGL+HYTC++  +GRAG L+ AE I  +MP + D  +W+ LLS   IH  A+MA +
Sbjct: 322 YGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQR 381

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
           + K ++ I+P D + YV++ANV +   RW +V+EVRK M+D+ V+KE G SW E KG+VH
Sbjct: 382 VFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVH 441

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
            F  GDR   ++++IY+ L EL  E +  GY P    +LH++ + EK   L  HSEKLA+
Sbjct: 442 QFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAV 501

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AF L+   P G  +RI+KNLR+C DCH +FKYIS +  REI +RD +R+H F+NG C+CG
Sbjct: 502 AFALMI-LPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCG 560

Query: 573 DLW 575
           D W
Sbjct: 561 DYW 563



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 5/153 (3%)

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           +N +    LI+GY +AG + +AR+VFDE +       WNAM+AG  Q       L LF  
Sbjct: 21  KNYMSSNILINGYVRAGDLVNARKVFDE-MPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 79

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
           +   GF+PDEY+  +V +   +AGL   S  + I    ++Y LE  L   + L     R 
Sbjct: 80  MHGLGFSPDEYTLGSVFSG--SAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRN 137

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           G+L+D E +  +MP   +   W  L+  +A +G
Sbjct: 138 GKLQDGEIVIRSMPVR-NLVAWNTLIMGNAQNG 169



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 80/175 (45%), Gaps = 6/175 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI--SAHSNS 77
           +H   +K   + D  + ++L   Y ++  L     +   +P  N+V+W  LI  +A +  
Sbjct: 111 IHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGC 170

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P ++     M++       PN+ T  ++  +C+ L+     G  +H+ ++K+        
Sbjct: 171 PETVLYLYKMMKISGCR--PNKITFVTVLSSCSDLAIRGQ-GQQIHAEAIKIGASSVVAV 227

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            S+L+  YS+     +A K F E  + D V + +MI  +  + +  +++ +F  M
Sbjct: 228 VSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTM 282


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 317/572 (55%), Gaps = 22/572 (3%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS- 77
           +HA ALK+   D + +  + L+  Y     +    R+F+ +    I  W A+I+ +S + 
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383

Query: 78  --PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               +L +F+ M    +   L N  T+A +   C   S AF    ++H   +K  L    
Sbjct: 384 HDKEALLLFIGM--EESAGLLANSTTMAGVVPACVR-SGAFSRKEAIHGFVVKRGLDRDR 440

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  + L+  YSR    D A ++F ++ +RD+V +  MI G+  +    D+L +   M++ 
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 500

Query: 196 D-----------VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +           +      +   L + A L+A+ + + IH +A+ + L  +V VG+ L+D
Sbjct: 501 ERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G +  +R+VFD+ +   N I WN ++  Y   G+    ++L  ++ ++G  P+E 
Sbjct: 561 MYAKCGCLQMSRKVFDQ-IPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 619

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F++V  A  ++G+  E  +    MK  Y +EP  +HY C++  +GRAGR+++A ++   
Sbjct: 620 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 679

Query: 365 MPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           MP + + A  W +LL  S IH   ++     + LI + P   S YV++AN+ S  G WD+
Sbjct: 680 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 739

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
             EVR+ MK++ VRKE G SWIE   +VH F+AGD  H ++E +   L  L E   + GY
Sbjct: 740 ATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGY 799

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           VP    +LHNV + EK   L  HSEKLA+AFG+++ +P G  +R+ KNLR+C DCH + K
Sbjct: 800 VPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSP-GTIIRVAKNLRVCNDCHLATK 858

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +IS++V+REI++RDV R+HRF NG+C+CGD W
Sbjct: 859 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 158/364 (43%), Gaps = 17/364 (4%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRH 90
           ++ N L+  Y K        ++F+ I   N VSW +LIS+        ++L  F  ML  
Sbjct: 134 TVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDE 193

Query: 91  PTLSFLPNQRTLASLFKTCASLS--HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
              +  P+  TL S+   C++L      + G  +H+  L+       F  + LV  Y + 
Sbjct: 194 ---NVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKL 249

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               ++K +      RD+V +  ++    QN +L+++L    +M    V    + +S  L
Sbjct: 250 GKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 309

Query: 209 RAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
            A + L  +   + +H +A+ +G LD N  VG+ L+D Y     V   RRVFD       
Sbjct: 310 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369

Query: 268 SIAWNAMMAGYAQ-QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
            + WNAM+AGY+Q + D+  +L    + E  G   +  +   V+ A   +G     E  I
Sbjct: 370 GL-WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEA-I 427

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS---FSAI 383
               V+  L+        L+    R G+++ A RI   M  + D   W  +++   FS  
Sbjct: 428 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEH 486

Query: 384 HGKA 387
           H  A
Sbjct: 487 HEDA 490



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN-VIVGT 240
           L +++  + DM    +    Y     L+A A+L  ME  + IH H    G   + V V  
Sbjct: 78  LREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVAN 137

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            L++ Y K G      +VFD  +S  N ++WN++++           LE F  +      
Sbjct: 138 TLVNLYRKCGDFGAVYKVFDR-ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 196

Query: 301 PDEYSFLAVLTALCN 315
           P  ++ ++V+TA  N
Sbjct: 197 PSSFTLVSVVTACSN 211


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/543 (35%), Positives = 300/543 (55%), Gaps = 10/543 (1%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTL 93
           N LI  Y ++  L  + ++F+ +P   + +W A+I+       +   L++F  M     L
Sbjct: 114 NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM---HGL 170

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            F P++ TL S+F   A L  +   G  +H  ++K  L       S+L H Y R     +
Sbjct: 171 GFSPDEYTLGSVFSGSAGL-RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 229

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
            + V   +  R++V +  +I+G AQN      L ++  M+ S            L + ++
Sbjct: 230 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 289

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           LA   Q + IH  A+  G    V V + LI  Y K G + DA + F E     + + W++
Sbjct: 290 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE-DEVMWSS 348

Query: 274 MMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           M++ Y   G     +ELF+ + E      +E +FL +L A  ++GL  +  +  + M  +
Sbjct: 349 MISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEK 408

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y  +PGL+HYTC++  +GRAG L+ AE I  +MP + D  +W+ LLS   IH  A+MA +
Sbjct: 409 YGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQR 468

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
           + K ++ I+P D + YV++ANV +   RW +V+EVRK M+D+ V+KE G SW E KG+VH
Sbjct: 469 VFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVH 528

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
            F  GDR   ++++IY+ L EL  E +  GY P    +LH++ + EK   L  HSEKLA+
Sbjct: 529 QFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAV 588

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AF L+   P G  +RI+KNLR+C DCH +FKYIS +  REI +RD +R+H F+NG C+CG
Sbjct: 589 AFALMI-LPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCG 647

Query: 573 DLW 575
           D W
Sbjct: 648 DYW 650



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 5/153 (3%)

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           +N +    LI+GY +AG + +AR+VFDE +       WNAM+AG  Q       L LF  
Sbjct: 108 KNYMSSNILINGYVRAGDLVNARKVFDE-MPDRKLTTWNAMIAGLIQFEFNEEGLSLFRE 166

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
           +   GF+PDEY+  +V +   +AGL   S  + I    ++Y LE  L   + L     R 
Sbjct: 167 MHGLGFSPDEYTLGSVFSG--SAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRN 224

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           G+L+D E +  +MP   +   W  L+  +A +G
Sbjct: 225 GKLQDGEIVIRSMPVR-NLVAWNTLIMGNAQNG 256



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 59/325 (18%), Positives = 131/325 (40%), Gaps = 31/325 (9%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI--SAHSNS 77
           +H   +K   + D  + ++L   Y ++  L     +   +P  N+V+W  LI  +A +  
Sbjct: 198 IHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGC 257

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P ++     M++       PN+ T  ++  +C+ L+     G  +H+ ++K+        
Sbjct: 258 PETVLYLYKMMKISGCR--PNKITFVTVLSSCSDLAIRGQ-GQQIHAEAIKIGASSVVAV 314

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF---AQNSRLVDSLSVFADMRS 194
            S+L+  YS+     +A K F E  + D V + +MI  +    Q    ++  +  A+  +
Sbjct: 315 VSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTN 374

Query: 195 SDVGSTMY------CVSGALR-AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
            ++    +      C    L+    EL  M    ++  +    GL       T ++D  G
Sbjct: 375 MEINEVAFLNLLYACSHSGLKDKGLELFDM----MVEKYGFKPGLKHY----TCVVDLLG 426

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           +AG +  A  +        + + W  +++      +      +F   E+    P++ +  
Sbjct: 427 RAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFK--EILQIDPNDSACY 484

Query: 308 AVLTALCNAGLAGESEKWIERMKVR 332
            +L     A +   +++W +  +VR
Sbjct: 485 VLL-----ANVHASAKRWRDVSEVR 504


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 305/564 (54%), Gaps = 13/564 (2%)

Query: 22  HARALKSSQA---------DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           H R L+ + A          R++   L+T    +  ++Y+ RLF  +  P+   + +LI 
Sbjct: 22  HLRRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIK 81

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           A SN   SL+      R      +P+  T  S+ K CA LS     G  +HS        
Sbjct: 82  ASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLS-LLRLGTIVHSHVFVSGYA 140

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F  +ALV FY++  +P  A+KVFDE+ +R ++ + +MI G+ QN    +++ VF  M
Sbjct: 141 SNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKM 200

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R S            L A ++L +++    +H   V +G+  NV++ T L++ + + G V
Sbjct: 201 RESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDV 260

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD +++  N ++W AM++GY   G     +E+FH ++  G  P+  +++AVL+A
Sbjct: 261 GRARAVFD-SMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSA 319

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA- 371
             +AGL  E       MK  Y + PG+EH+ C++   GR G L +A +    +  E    
Sbjct: 320 CAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVP 379

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           AVW A+L    +H   D+  ++ + LI   P +   YV+++N+ +  GR D V  VR VM
Sbjct: 380 AVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVM 439

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
             R ++K+ G S I+V+ + ++F  GD+ H  T +IY  L ELM  C+  GY P  +  +
Sbjct: 440 IQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAM 499

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H + + E+  AL YHSEKLA+AFGL+     G TLRIVKNLRIC DCH + K+IS V+ R
Sbjct: 500 HELEEEEREYALRYHSEKLAVAFGLMKTC-HGVTLRIVKNLRICEDCHSAIKFISVVMNR 558

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD  R+H F  GSC+C D W
Sbjct: 559 EIIVRDKLRFHHFREGSCSCSDYW 582


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 200/594 (33%), Positives = 319/594 (53%), Gaps = 43/594 (7%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNL--LSYSLRLFNHIPSPNIVSWTALIS----AH 74
           VHAR + +      I  N +     S    +SY+  +F+H P P++  +  +I     + 
Sbjct: 20  VHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTIIKVLAFST 79

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           ++S  S   F S++R   L  +PNQ + A  FK C S     L G  +   ++KL L + 
Sbjct: 80  TSSADSFTKFRSLIREERL--VPNQYSFAFAFKGCGS-GVGVLEGEQVRVHAIKLGLENN 136

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDE-------------------------------IRE 163
            F  +AL+  Y       +A+KVFD                                + E
Sbjct: 137 LFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPE 196

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           +DVV +  MI G  Q    +++L +F +M +  +    Y ++ +L A A L A++Q R +
Sbjct: 197 KDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWM 256

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI-AWNAMMAGYAQQG 282
           H +   + +  N  +  GLID Y K G +  A ++F+ N  +   +  WNAM+ G+A  G
Sbjct: 257 HVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHG 316

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                +E+F  +++   +P++ +F+A+L A  +     E   + E M   Y+++P LEHY
Sbjct: 317 KSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHY 376

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
            CL+  +GRAGRL++AE I  +M   PD A+W ALLS   IH  A+M  ++GK + +++P
Sbjct: 377 GCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDP 436

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
                +V++AN+ S  G W+E   +R+ + +   +K  G S IE+ G  H FL GDR H 
Sbjct: 437 NHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHP 496

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE-ALWYHSEKLALAFGLVSGAP 521
           +T+ +Y  L E++ + +  GY+P   E+L ++ D E RE AL  HSEKLA+AFGL++  P
Sbjct: 497 QTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNTTP 556

Query: 522 RGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +   +RIVKNLR+C DCH + K+IS+V +REI+VRD  RYH F +G+C+C D W
Sbjct: 557 K-TPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/531 (35%), Positives = 302/531 (56%), Gaps = 16/531 (3%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           R F+ IP PN V  TA+ S +  + L   SL +F +M+   + S +     L + F   A
Sbjct: 150 RAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVA-FSASA 208

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD--NAKKVFDEIRERDVVC 168
            +    +   SLH+L  K+         + ++  Y++  S D   A+KVFD + ERDVV 
Sbjct: 209 RVPDRGVTA-SLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVS 266

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC----VSGALRAAAELAAMEQCRVIH 224
           + +MI  +AQN    +++ +++ M   +VG  + C    +S  L A A   A++  + IH
Sbjct: 267 WNSMIALYAQNGMSAEAIGLYSKML--NVGGGIKCNAVALSAVLLACAHAGAIQTGKRIH 324

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
              V  GL+ NV VGT ++D Y K G V  A R F   +   N ++W+AM+ GY   G  
Sbjct: 325 NQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAF-RKIKEKNILSWSAMITGYGMHGRG 383

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              LE+F  ++  G  P+  +F++VL A  +AGL  E   W   MK  + +E G+EHY C
Sbjct: 384 QEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGC 443

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  +GRAG L++A  +   M  +PDAA+W ALLS   IH   ++A    KRL +++  +
Sbjct: 444 MVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASN 503

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
              YV+++N+ +    W +V  +R ++K RR+ K  G S  E+KGK+++F  GD+ H + 
Sbjct: 504 SGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQH 563

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
            +IY+ L +L+E  +  GYVP    +LH++ + EK  AL  HSEKLA+AF L++  PR  
Sbjct: 564 IEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPR-S 622

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + I+KNLR+C DCH + K+I+++ EREI++RD+ R+H F +G C+C D W
Sbjct: 623 VIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/583 (33%), Positives = 313/583 (53%), Gaps = 33/583 (5%)

Query: 21  VHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +HA  L+++    +  + + L+  Y     +    R+F+HI    I  W A+IS ++ + 
Sbjct: 319 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 378

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           L   +L +F+ M++      LPN  T+AS+   C     AF    S+H  ++KL   +  
Sbjct: 379 LDEKALILFIEMIK--VAGLLPNTTTMASVMPACVH-CEAFSNKESIHGYAVKLGFKEDR 435

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           +  +AL+  YSR    D ++ +FD +  RD V +  MI G+  + R  ++L +  +M+  
Sbjct: 436 YVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRM 495

Query: 196 D-----------------VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           +                        +   L   A LAA+ + + IH +A+ + L  ++ V
Sbjct: 496 ENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITV 555

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL---E 295
           G+ L+D Y K G ++ +RRVF+E +   N I WN ++      G     LELF  +    
Sbjct: 556 GSALVDMYAKCGCLNLSRRVFNE-MPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEA 614

Query: 296 MRG--FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
            RG    P+E +F+ V  A  ++GL  E      RMK  + +EP  +HY C++  +GRAG
Sbjct: 615 GRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAG 674

Query: 354 RLEDAERIAMAMPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412
           +LE+A  +   MP E D    W +LL    IH   ++     K L+ + P   S YV+++
Sbjct: 675 QLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLS 734

Query: 413 NVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLA 472
           N+ S  G W++  EVRK M+   V+KE G SWIE + +VH F+AGD  H ++E ++  L 
Sbjct: 735 NIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLE 794

Query: 473 ELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNL 532
            L E+  + GYVP    +LHNV + EK   L  HSEKLA+AFG+++  P G T+R+ KNL
Sbjct: 795 TLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILN-TPPGTTIRVAKNL 853

Query: 533 RICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           R+C DCH + K+IS+++EREI+VRDV R+H F  G+C+CGD W
Sbjct: 854 RVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 175/376 (46%), Gaps = 18/376 (4%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HS 75
           +HA A+K      S+   N L+  Y K   +    ++F+ I   + VSW + I+A     
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFE 173

Query: 76  NSPLSLNIFLSM-LRHPTLSFLPNQRTLASLFKTCASLS--HAFLFGLSLHSLSLKLSLH 132
               +L  F +M + +  LS      TL S+   C++L   H    G  LH  SL++   
Sbjct: 174 KWEQALEAFRAMQMENMELSSF----TLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-D 228

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            K F  +AL+  Y++    D++K +F+   +RD+V +  MI  F+Q+ R  ++L+ F  M
Sbjct: 229 QKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLM 288

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGI 251
               V      ++  L A + L  ++  + IH + + +  L  N  VG+ L+D Y     
Sbjct: 289 VLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQ 348

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQG-DQSTVLELFHLLEMRGFAPDEYSFLAVL 310
           V   RRVFD  L     + WNAM++GYA+ G D+  ++    ++++ G  P+  +  +V+
Sbjct: 349 VESGRRVFDHILGRRIEL-WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVM 407

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A C    A  +++ I    V+   +        L+    R G+++ +E I  +M    D
Sbjct: 408 PA-CVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR-D 465

Query: 371 AAVWRALLSFSAIHGK 386
              W  +++   + G+
Sbjct: 466 RVSWNTMITGYVLSGR 481


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/568 (33%), Positives = 301/568 (52%), Gaps = 7/568 (1%)

Query: 11  PQNTSTDPRIVHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           P  ++  P+I H+ A++      D  +    +  Y K+  L  +  LF  +P+ N+V+W 
Sbjct: 24  PPRSTIGPQI-HSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWN 82

Query: 69  ALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           A+++        L    +         LPN  +  + F  CA   +  L G   H   +K
Sbjct: 83  AVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSL-GEQFHGFVVK 141

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
                     +++V FY + R    A+ VFD +  R+ V + +M+  +AQN    ++ + 
Sbjct: 142 CGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAA 201

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           +   R S    T + VS AL   A L  +   R +H  AV S +D N+ V + L+D YGK
Sbjct: 202 YLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGK 261

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFL 307
            G V DA ++F E     N + WNAM+ GYA  GD    L +F  +   G  AP+  + +
Sbjct: 262 CGCVEDAEQIFYETPQ-RNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLV 320

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            V+T+    GL  +  +  E M+ R+ +EP  EHY C++  +GRAG  E A  +   MP 
Sbjct: 321 NVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPM 380

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            P  +VW ALL    +HGK ++     ++L +++P D   +V+++N+ +  GRW E  ++
Sbjct: 381 RPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDI 440

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           RK MK+  ++K+ G SW+  K  VHVF A D  HE   +I   L++L ++ +  GY+P  
Sbjct: 441 RKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDT 500

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
              L+++ + EK   ++ HSEKLALAFGL+   P G  +RI+KNLRIC DCH +FK+IS 
Sbjct: 501 QYSLYDLEEEEKESEVFQHSEKLALAFGLIC-IPPGVPIRIMKNLRICVDCHRAFKFISG 559

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +V REI+VRD NR+H F    C+CGD W
Sbjct: 560 IVGREIIVRDNNRFHHFKQYQCSCGDYW 587



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 146/336 (43%), Gaps = 10/336 (2%)

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LHDKPFCGSALVHFY 145
           MLR   L   PN  T  S FK  AS       G  +HSL+++   L   PF   A +  Y
Sbjct: 1   MLR---LGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMY 57

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205
            +      A+ +F E+  R+VV + A++     + R ++++  +  +R +     +    
Sbjct: 58  FKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSAC 117

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
               A A    +      HG  V  G + +V V   ++D YGK      AR VFD  + V
Sbjct: 118 AFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFD-GMGV 176

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG-ESEK 324
            NS++W +M+A YAQ G +      +      G  P ++   + LT    AGL G    +
Sbjct: 177 RNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTC--AGLLGLHLGR 234

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
            +  + VR  ++  +   + L+   G+ G +EDAE+I    P + +   W A++   A  
Sbjct: 235 ALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP-QRNLVTWNAMIGGYAHI 293

Query: 385 GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
           G A  A  +   +I       + Y+ + NV++   R
Sbjct: 294 GDAQNALLVFDDMIRSGETAPN-YITLVNVITSCSR 328


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 309/563 (54%), Gaps = 18/563 (3%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
           +HAR+LK  S  +  +  +L++ Y+K  LL  + R+F+ +P P+ V WTALI+A+ ++  
Sbjct: 93  LHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD 152

Query: 79  ------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
                 ++ N F + +R       P+  T   +   CA ++     G ++   + +  + 
Sbjct: 153 LREAVHVARNAFANGMR-------PDSFTAVRVLTACARIAD-LATGETVWRAAEQEGVA 204

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F  +A V  Y +      A++VFD++R +D V +GAM+ G+A N    ++L +F  M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           ++  +    Y V+GAL A   L A++  R             N ++GT LID Y K G  
Sbjct: 265 QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 324

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +A  VF + +   + I WNAM+ G    G +     L   +E  G   ++ +F+ +L +
Sbjct: 325 VEAWVVF-QQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCS 383

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL  +  ++   M   Y + P +EHY C++  + RAG L++A ++   MP   +A 
Sbjct: 384 CTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAV 443

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +  ALL    IH   ++A  + K+LI + P++   YV+++N+ S  GRW++ A++R  MK
Sbjct: 444 ILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMK 503

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            + V K    SW+E +GKVH F  GD+ H  ++ IY KL EL  E + +GY P  + ++ 
Sbjct: 504 AKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMF 563

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V D EK   L +HSEKLA+AF L+   P G+T+R+ KNLR+C DCH + K +SR+  RE
Sbjct: 564 DVEDEEKEHTLVHHSEKLAIAFNLLITGP-GETIRVTKNLRVCSDCHTAIKLVSRITHRE 622

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+H F +GSC+C D W
Sbjct: 623 IIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 1/235 (0%)

Query: 83  IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142
           + L  LR   L   P+  T+    K+ + L H    G  LH+ SLKL  H  P   ++L+
Sbjct: 54  LHLHALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLL 113

Query: 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
             Y++      A++VFDE+     V + A+I  +     L +++ V  +  ++ +    +
Sbjct: 114 SLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSF 173

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
                L A A +A +     +   A   G+ ++V V T  +D Y K G ++ AR VFD+ 
Sbjct: 174 TAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDK- 232

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +   +++AW AM+ GYA  G     L+LF  ++  G  PD Y+    L+A    G
Sbjct: 233 MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLG 287


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/553 (33%), Positives = 315/553 (56%), Gaps = 23/553 (4%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPTL 93
           N++I  YSK  ++  + R+FN +P  N++SW A+I+ ++N      +LN+F  M     +
Sbjct: 43  NSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEV 102

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF-----CGSALVHFYSRF 148
              P+  T +S  K C S + A   G+ +H+  ++   H  P+        ALV  Y + 
Sbjct: 103 ---PDGYTYSSSLKAC-SCADAAGEGMQIHAALIR---HGFPYLAQSAVAGALVDLYVKC 155

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           R    A+KVFD I E+ V+ +  +I+G+AQ   L +++ +F ++R S      + +S  +
Sbjct: 156 RRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSII 215

Query: 209 RAAAELAAMEQCRVIHGHA--VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
              A+ A +EQ + +H +   V  GL   + V   ++D Y K G+  +A  +F E L   
Sbjct: 216 GVFADFALLEQGKQMHAYTIKVPYGL-LEMSVANSVLDMYMKCGLTVEADALFREMLE-R 273

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N ++W  M+ GY + G  +  +ELF+ ++  G  PD  ++LAVL+A  ++GL  E +K+ 
Sbjct: 274 NVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYF 333

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             +    K++P +EHY C++  +GR GRL++A+ +   MP +P+  +W+ LLS   +HG 
Sbjct: 334 SILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGD 393

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            +M  ++G+ L+     + + YV+V+N+ +  G W E  ++R+ +K + ++KE GRSW+E
Sbjct: 394 VEMGKQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVE 453

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEEC-ERLGYVPVWDEMLHNVGDREKREALWY 505
           +  ++H+F  GD MH   E+I+  L E+ +   E +GYV   +  LH+V +  K E+L  
Sbjct: 454 MDKEIHIFYNGDGMHPLIEEIHEVLKEMEKRVKEEMGYVHSINFSLHDVEEESKMESLRV 513

Query: 506 HSEKLALAFGLVSGAPRGK---TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562
           HSEKLA+   LV    + K    +RI KNLR+C DCH   K +S+V++   VVRD NR+H
Sbjct: 514 HSEKLAIGLVLVRRGLKLKGERVIRIFKNLRVCGDCHAFIKGLSKVLKIAFVVRDANRFH 573

Query: 563 RFLNGSCTCGDLW 575
           RF NG C+CGD W
Sbjct: 574 RFENGLCSCGDYW 586



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           ++Q + +HG     G D   +VG  +ID Y K G+V +A RVF+  L V N I+WNAM+A
Sbjct: 20  LDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFN-TLPVRNVISWNAMIA 78

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
           GY  + +    L LF  +  +G  PD Y++ + L A   A  AGE 
Sbjct: 79  GYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEG 124



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 53/305 (17%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H +  KL        G++++  YS+      A +VF+ +  R+V+ + AMI G+  
Sbjct: 23  GKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTN 82

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG---LDRN 235
                ++L++F +MR        Y  S +L+A +   A  +   IH   +  G   L ++
Sbjct: 83  ERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQS 142

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
            + G  L+D Y K   +++AR+VFD  E  SV+   +W+ ++ GYAQ+ +    ++LF  
Sbjct: 143 AVAGA-LVDLYVKCRRMAEARKVFDRIEEKSVM---SWSTLILGYAQEDNLKEAMDLFRE 198

Query: 294 L-----EMRGFAPDE-------------------------YSFL------AVLTALCNAG 317
           L      M GF                             Y  L      +VL      G
Sbjct: 199 LRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCG 258

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP---FEPDAAVW 374
           L  E++     M     LE  +  +T +I+  G+ G    A  +   M     EPD+  +
Sbjct: 259 LTVEADALFREM-----LERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTY 313

Query: 375 RALLS 379
            A+LS
Sbjct: 314 LAVLS 318


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/544 (33%), Positives = 312/544 (57%), Gaps = 9/544 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           +YN +IT   +  ++  +  +F  +   + ++WT +++  + + L   +L++F  M R  
Sbjct: 217 MYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRM-RAE 275

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            +    +Q T  S+   C +L+ A   G  +H+ +++       F GSALV  YS+ RS 
Sbjct: 276 GVGI--DQYTFGSILTACGALA-ASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSI 332

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A+ VF  +  ++++ + AMIVG+ QN    +++ VF++M++  +    + +   + + 
Sbjct: 333 RLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSC 392

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A LA++E+    H  A+VSGL   + V + L+  YGK G + DA R+FDE +   + +++
Sbjct: 393 ANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDE-MPFHDQVSY 451

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            A+++GYAQ G     ++LF  + ++G  P+  +F+ VL+A   +GL  +   +   M+ 
Sbjct: 452 TALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQ 511

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            + +    +HYTC+I    R+GRL++AE     MP  PDA  W  LLS   + G  ++  
Sbjct: 512 DHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGK 571

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              + L+  +P + ++YV++ ++ +  G W EVA +R+ M+DR+V+KE G SWI+ K +V
Sbjct: 572 WAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRV 631

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H+F A D+ H  +  IY KL  L  +    GY P    +LH+V D EK   L  HSEKLA
Sbjct: 632 HIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLA 691

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL+   P    +R+VKNLR+C DCH + K+IS++  R+I+VRD  R+H+F NG C+C
Sbjct: 692 IAFGLIF-VPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSC 750

Query: 572 GDLW 575
           GD W
Sbjct: 751 GDFW 754



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 195/451 (43%), Gaps = 79/451 (17%)

Query: 18  PRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           P  VH   L++       Y  N+L+T Y++S  L  + RLF+ +P PN+ +  AL+SA +
Sbjct: 28  PGAVHCLVLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALA 87

Query: 76  NS---PLSLNIFLSMLRHPTLSF-----------------------------------LP 97
           ++   P    +F SM +   +S+                                    P
Sbjct: 88  HARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRP 147

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           ++ T++ +    ++L    L G  +H   ++L      F  S LV  Y++     +AK+V
Sbjct: 148 SRITMSGMVMAASALGDRAL-GRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRV 206

Query: 158 FDEIRERDVVCYGAMI-------------------------------VGFAQNSRLVDSL 186
           FDE+  ++VV Y  MI                                G  QN    ++L
Sbjct: 207 FDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEAL 266

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
            VF  MR+  VG   Y     L A   LAA E+ + IH + + +  D N+ VG+ L+D Y
Sbjct: 267 DVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMY 326

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            K   +  A  VF   ++  N I+W AM+ GY Q G     + +F  ++  G  P++++ 
Sbjct: 327 SKCRSIRLAEAVF-RRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTL 385

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
            +V+++  N     E  ++   M +   L P +   + L++  G+ G +EDA R+   MP
Sbjct: 386 GSVISSCANLASLEEGAQF-HCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMP 444

Query: 367 FEPDAAVWRALLSFSAIHGKA----DMASKM 393
           F  D   + AL+S  A  GKA    D+  KM
Sbjct: 445 FH-DQVSYTALVSGYAQFGKAKETIDLFEKM 474


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/575 (33%), Positives = 311/575 (54%), Gaps = 10/575 (1%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
            N    P   S    I    + +  ++D  + N+ +  +  + LL  + RLF  +   ++
Sbjct: 214 FNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDV 273

Query: 65  VSWTALIS---AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
           V+W  +I+    + N   ++ +F  + +        N  T   +     SL+ +   G  
Sbjct: 274 VTWNIVITFYVQNENFGEAVRLFGRLQQD---GIKANDITFVLMLNVYTSLT-SLAKGKV 329

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H L  +          +AL+  Y R  +P  A K+F ++  +DV+ +  M V +AQN  
Sbjct: 330 IHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGF 389

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
             ++L +F +M+      T   +   L   A LAA+++ R IH H + +G    ++V T 
Sbjct: 390 RKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETA 449

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           LI+ YGK G +++AR VF E ++  + + WN+M+  YAQ G     L+LF+ +++ G   
Sbjct: 450 LINMYGKCGKMAEARSVF-EKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKA 508

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           D  SF++VL+AL ++G   +  ++   M   + + P  E Y C++  +GRAGR+++A  I
Sbjct: 509 DAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDI 568

Query: 362 AMAMP-FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
            + +    PD  +W  LL     H K D A    +++++ +P    AYV+++NV +  G 
Sbjct: 569 VLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGD 628

Query: 421 WDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECER 480
           WD V  +RK+M+ R V+KE GRS IE+  +VH FL GDR H R   IY +L  L  E   
Sbjct: 629 WDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRA 688

Query: 481 LGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHE 540
            GY+P    +LH+V D  K + L+YHSE+LA+AFGL+S  P G  LR++KNLR+C DCH 
Sbjct: 689 AGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMS-TPPGTPLRVIKNLRVCSDCHT 747

Query: 541 SFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           + KYIS++  REI+VRD +R+H F +G C+C D W
Sbjct: 748 ATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 190/406 (46%), Gaps = 16/406 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +H + L+   + D  +   LI  Y+K   +  +   F  +   ++VSWTA+I+A   H  
Sbjct: 128 IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQ 187

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL-SLKLSLHDKP 135
             L+  ++  M        +PN+ TL ++F       H    G  ++SL S ++   D  
Sbjct: 188 FALARWLYRRM---QLDGVVPNKITLYTVFNAYGD-PHYLSEGKFIYSLVSSRVMESDVR 243

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              SA+  F +     D A+++F+++ +RDVV +  +I  + QN    +++ +F  ++  
Sbjct: 244 VMNSAMNMFGNAGLLGD-ARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQD 302

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            + +        L     L ++ + +VIH     +G DR+V+V T L+  YG+      A
Sbjct: 303 GIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQA 362

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            ++F  ++   + I W  M   YAQ G +   L+LF  +++ G  P   + +AVL    +
Sbjct: 363 WKIF-VDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAH 421

Query: 316 -AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            A L    +     ++  +++E  +E  T LI+  G+ G++ +A  +   M  + D  VW
Sbjct: 422 LAALQKGRQIHSHIIENGFRMEMVVE--TALINMYGKCGKMAEARSVFEKMA-KRDILVW 478

Query: 375 RALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIVANVLSGVG 419
            ++L   A HG  D   ++  ++ +D    D  ++V V + LS  G
Sbjct: 479 NSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSG 524



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 142/331 (42%), Gaps = 17/331 (5%)

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF------CGSALVHFYSRF 148
           F P+     +L + C+S  +        H   +   + D+ F      CG  L+  Y++ 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVD------HGRRVHWHVCDRGFEQNNLVCGH-LIQMYAQC 53

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
            S   A++VF+ +  +DV  +  MI  + Q      +L +F  M+  DV  T       L
Sbjct: 54  GSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAIL 113

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A A   +++    IHG  +  G + +V VGT LI+ Y K G V  A   F + L   + 
Sbjct: 114 NACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSF-KRLEHRDV 172

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++W AM+A   Q    +    L+  +++ G  P++ +   V  A  +     E  K+I  
Sbjct: 173 VSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG-KFIYS 231

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           +     +E  +      ++  G AG L DA R+   M  + D   W  +++F   +    
Sbjct: 232 LVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITFYVQNENFG 290

Query: 389 MASKMGKRL-IDINPYDDSAYVIVANVLSGV 418
            A ++  RL  D    +D  +V++ NV + +
Sbjct: 291 EAVRLFGRLQQDGIKANDITFVLMLNVYTSL 321


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/559 (33%), Positives = 318/559 (56%), Gaps = 9/559 (1%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           I+H + +K    +D  + N L+  Y+K   +  +  +F+ +    IVSWT++IS ++ + 
Sbjct: 175 IIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNG 234

Query: 79  LSLNIF--LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            ++      S +R+  +   P+   L S+ +    +      G S+H   +K+ L D+P 
Sbjct: 235 KAVEALRMFSQMRNNGVK--PDWIALVSILRAYTDVDD-LEQGRSIHGFVIKMGLEDEPA 291

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
              +L  FY++      AK  FD+++  +V+ + AMI G+A+N    +++++F  M S +
Sbjct: 292 LLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRN 351

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      V  A+ A+A++ ++E  + +  +   S    ++ V T LID Y K G V  AR
Sbjct: 352 IKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFAR 411

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RVFD N S  + + W+AM+ GY   G     + L+H+++  G  P++ +F+ +LTA  ++
Sbjct: 412 RVFDRN-SDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHS 470

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E  +    MK  +++ P  EHY+C++  +GRAG L +A    M +P EP  +VW A
Sbjct: 471 GLVKEGWELFHCMK-DFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGA 529

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LLS   I+    +      +L  ++PY+   YV ++N+ +    WD VA VR +M+++ +
Sbjct: 530 LLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGL 589

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            K+ G S IE+ GK+  F  GD+ H   ++I+ +L  L    + +G+VP  + +LH++  
Sbjct: 590 NKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNY 649

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK E L +HSE++A+A+GL+S AP G TLRI KNLR C +CH + K IS++VEREI+VR
Sbjct: 650 EEKEENLSFHSERIAVAYGLISTAP-GTTLRITKNLRACVNCHSAIKLISKLVEREIIVR 708

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F +G C+CGD W
Sbjct: 709 DANRFHHFKDGLCSCGDYW 727



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 193/421 (45%), Gaps = 12/421 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H R + S  Q +  +   L+   S    + Y+ +LF+    P++  W A+I ++S + +
Sbjct: 75  IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNM 134

Query: 80  SLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLS--LHSLSLKLSLHDKPF 136
             +  + M R    + + P+  T   + K C  L     FGLS  +H   +K       F
Sbjct: 135 YRDT-VEMYRWMRWTGVHPDGFTFPYVLKACTEL---LDFGLSCIIHGQIIKYGFGSDVF 190

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             + LV  Y++      AK VFD +  R +V + ++I G+AQN + V++L +F+ MR++ 
Sbjct: 191 VQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNG 250

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      +   LRA  ++  +EQ R IHG  +  GL+    +   L   Y K G+V+ A+
Sbjct: 251 VKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAK 310

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             FD+ +   N I WNAM++GYA+ G     + LFH +  R   PD  +  + + A    
Sbjct: 311 SFFDQ-MKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQV 369

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G + E  +W++    +      +   T LI    + G +E A R+      + D  +W A
Sbjct: 370 G-SLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRV-FDRNSDKDVVMWSA 427

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPY-DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ++    +HG+   A  +   +     + +D  ++ +    +  G   E  E+   MKD  
Sbjct: 428 MIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFE 487

Query: 436 V 436
           +
Sbjct: 488 I 488


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 203/579 (35%), Positives = 307/579 (53%), Gaps = 23/579 (3%)

Query: 11  PQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           P  +    + +HARAL+++    S  + L+  +     L + L      P P + + T L
Sbjct: 27  PSPSVAAAKQIHARALRAAGVPLS--HPLLAKH-----LLFHLASLRAGPPPLLYAVTVL 79

Query: 71  ISAHSNS-PLSLNIFLSMLR---HPTLSFL--------PNQRTLASLFKTCASLSHAFLF 118
                +  P SLN  L +     HP ++          P+  T   L + C  L  A   
Sbjct: 80  SCLLPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAPPDTHTYPPLLQACTRLL-ALRE 138

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR--ERDVVCYGAMIVGF 176
           G SLH+ + K  L    F  ++LVH Y      ++A +VFDEI   ER++V + +++ GF
Sbjct: 139 GESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGF 198

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           A N R  + L++F +   +D+    + +   L A AE+ A+   R +H  A   GL  N 
Sbjct: 199 AANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNS 258

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            VG  LID Y K G V DA +VF+E       ++W +++ G A  G     LELF L+E 
Sbjct: 259 HVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMER 318

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
               P + + + VL A  + GL  +  ++   M+ +Y + PG+EH  C++  +GRAGR+E
Sbjct: 319 ERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVE 378

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A      MP EP+A VWR LL   A+H K ++      RL++++P     YV+++N+ +
Sbjct: 379 EAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYA 438

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
            VGRW +   +RK M    VRK  G S +E++  V+ F+ GDR H  ++ IY  LAE+ E
Sbjct: 439 AVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAE 498

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
                GYVP    +L ++ + EK  AL YHSE+LA+AF L+   P G  +RIVKNLR+C 
Sbjct: 499 RLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLP-GSPIRIVKNLRMCG 557

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH   K IS+V +REI+VRD +R+H F  G C+C D W
Sbjct: 558 DCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 313/563 (55%), Gaps = 13/563 (2%)

Query: 19  RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP--NIVSWTALISAHS 75
           R VHA+  +    AD  + N LI  Y+K   L  +  +F  +P P   IVSWTA++SA++
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 76  NS--PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            +  P+ +L IF  M +   +   P+   L S+      L      G S+H+  +K+ L 
Sbjct: 199 QNGEPMEALEIFSQMRK---MDVKPDWVALVSVLNAFTCLQD-LKQGRSIHASVVKMGLE 254

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            +P    +L   Y++      AK +FD+++  +++ + AMI G+A+N    +++ +F +M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            + DV      ++ A+ A A++ ++EQ R ++ +   S    +V + + LID + K G V
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD  L   + + W+AM+ GY   G     + L+  +E  G  P++ +FL +L A
Sbjct: 375 EGARLVFDRTLD-RDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMA 433

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++G+  E   +  RM   +K+ P  +HY C+I  +GRAG L+ A  +   MP +P   
Sbjct: 434 CNHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVT 492

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALLS    H   ++     ++L  I+P +   YV ++N+ +    WD VAEVR  MK
Sbjct: 493 VWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMK 552

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           ++ + K+ G SW+EV+G++  F  GD+ H R E+I  ++  +    +  G+V   D  LH
Sbjct: 553 EKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLH 612

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ D E  E L  HSE++A+A+GL+S  P+G  LRI KNLR C +CH + K IS++V+RE
Sbjct: 613 DLNDEEAEETLCSHSERIAIAYGLIS-TPQGTPLRITKNLRACVNCHAATKLISKLVDRE 671

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H F +G C+CGD W
Sbjct: 672 IVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 169/370 (45%), Gaps = 7/370 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HAR L    Q    +   LI   S    ++++ ++F+ +P P I  W A+I  +S +  
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
             +  L           P+  T   L K C+ LSH    G  +H+   +L      F  +
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH-LQMGRFVHAQVFRLGFDADVFVQN 158

Query: 140 ALVHFYSRFRSPDNAKKVFD--EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            L+  Y++ R   +A+ VF+   + ER +V + A++  +AQN   +++L +F+ MR  DV
Sbjct: 159 GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV 218

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 +   L A   L  ++Q R IH   V  GL+    +   L   Y K G V+ A+ 
Sbjct: 219 KPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKI 278

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD+ +   N I WNAM++GYA+ G     +++FH +  +   PD  S  + ++A    G
Sbjct: 279 LFDK-MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              ++    E +  R      +   + LI    + G +E A R+      + D  VW A+
Sbjct: 338 SLEQARSMYEYVG-RSDYRDDVFISSALIDMFAKCGSVEGA-RLVFDRTLDRDVVVWSAM 395

Query: 378 LSFSAIHGKA 387
           +    +HG+A
Sbjct: 396 IVGYGLHGRA 405



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 7/285 (2%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H+  L L L    F  + L+H  S F     A++VFD++    +  + A+I G+++N+ 
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
             D+L ++++M+ + V    +     L+A + L+ ++  R +H      G D +V V  G
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNG 159

Query: 242 LIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
           LI  Y K   +  AR VF+   L     ++W A+++ YAQ G+    LE+F  +      
Sbjct: 160 LIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVK 219

Query: 301 PDEYSFLAVLTAL-CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
           PD  + ++VL A  C   L          +K+  ++EP L     L +   + G++  A+
Sbjct: 220 PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATAK 277

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINP 402
            +   M   P+  +W A++S  A +G A  A  M   +I  D+ P
Sbjct: 278 ILFDKMK-SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 10/203 (4%)

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           Q + IH   +V GL  +  + T LI      G ++ AR+VFD+ L       WNA++ GY
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD-LPRPQIFPWNAIIRGY 94

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           ++       L ++  +++   +PD ++F  +L A C+     +  +++     R   +  
Sbjct: 95  SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKA-CSGLSHLQMGRFVHAQVFRLGFDAD 153

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV-WRALLSFSAIHGKA----DMASKM 393
           +     LI+   +  RL  A  +   +P      V W A++S  A +G+     ++ S+M
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213

Query: 394 GKRLIDINPYDDSAYVIVANVLS 416
             R +D+ P D  A V V N  +
Sbjct: 214 --RKMDVKP-DWVALVSVLNAFT 233


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 184/548 (33%), Positives = 301/548 (54%), Gaps = 9/548 (1%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSM 87
            D    N LI  Y+K      + R+F+ +   +I+SW  +I+ ++++     +L +F  M
Sbjct: 89  TDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRM 148

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
            R  T      + TL+S    CA+  +A +    LH++++KL+L    F G+A +  Y++
Sbjct: 149 HREGTQM---TEFTLSSTLCACAA-KYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAK 204

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
                +A  VF+ + E+  V + ++  GF QN    + L +F   +   +  T + VS  
Sbjct: 205 CNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSI 264

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L   A LA + +   +H   V  G  RN+ V T L+D Y K G +  +  VF  ++   N
Sbjct: 265 LSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVF-ADMEEKN 323

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            + WNAM+A +++       + LF  ++  G  P+E ++L++L+A  + GL  E   +  
Sbjct: 324 VVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFN 383

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            +      EP + HY+C++  +GR+G+ ++A ++   MPFEP A++W +LL  S IH   
Sbjct: 384 LLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNI 443

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
            +A    ++L  + P +   +V+++NV +  G W+ V   RK ++D   +KE GRSWIE 
Sbjct: 444 RLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEA 503

Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
           KGK+HVF+AG+R H    D+Y KL E+  E  ++ +       LH+V   +K E L +HS
Sbjct: 504 KGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHS 563

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           EKLA AFGL+S  P    + I KNLRIC DCH   K +S + ER+++VRD+NR+H F +G
Sbjct: 564 EKLAFAFGLIS-LPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDG 622

Query: 568 SCTCGDLW 575
           SC+CGD W
Sbjct: 623 SCSCGDFW 630



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 155/324 (47%), Gaps = 5/324 (1%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           TL  L + CA    + L G S H L++   L       + L++ Y++    D A++VFD 
Sbjct: 58  TLHELLQLCAK-RRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDA 116

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           +  R ++ +  MI G+  N   V++L +F+ M       T + +S  L A A   A+ +C
Sbjct: 117 MSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIEC 176

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           + +H  A+   LD +  VGT  +D Y K  ++ DA  VF EN+    S+ W+++ AG+ Q
Sbjct: 177 KQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVF-ENMPEKTSVTWSSLFAGFVQ 235

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G    VL LF   +  G    E++  ++L+   +  L  E  + +  + V++     L 
Sbjct: 236 NGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQ-VHAVIVKHGFHRNLF 294

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
             T L+    + G++E +  +   M  E +  +W A+++  + H  +  A  + +++  +
Sbjct: 295 VATSLVDVYAKCGQIEKSYEVFADME-EKNVVLWNAMIASFSRHAHSWEAMILFEKMQQV 353

Query: 401 NPY-DDSAYVIVANVLSGVGRWDE 423
             + ++  Y+ + +  S  G  +E
Sbjct: 354 GIFPNEVTYLSILSACSHTGLVEE 377


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 187/536 (34%), Positives = 306/536 (57%), Gaps = 10/536 (1%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQ 99
           Y+K   +  ++R+F+ +   ++V WT +I+    +  +  +++I+  M +        + 
Sbjct: 150 YAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEG---DG 206

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
             +  L + C +L H+ + GLS+H   ++  +       ++LV  Y++    + A  VF 
Sbjct: 207 VVMLGLIQACTTLGHSKM-GLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFR 265

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
            +  ++V+ + A+I GFAQN    ++L +  DM+S         +   L A +++  ++ 
Sbjct: 266 RMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKL 325

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            + +HG+ +V  L  + +  T +ID Y K G +S AR VFD+ +S  +SI+WNA++A Y 
Sbjct: 326 GKSVHGY-IVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQ-ISFRDSISWNAIIASYG 383

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
             G     L LF  +      PD  +F ++L+A  ++GL  +   W   M   YK++P  
Sbjct: 384 IHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSE 443

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           +HY C++  + RAGR+E+A+ +  +M  EP  A+W ALLS    HGK  +     K++++
Sbjct: 444 KHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLE 503

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDR 459
           +NP D   Y +V+N  +   RWDEVAEVRK+MK   ++K  G S +EV GK+H FL  D+
Sbjct: 504 LNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDK 563

Query: 460 MHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG 519
            H + E+I   L +L  E + +GYVP  + +LHN+ +  K   L  HSE+LA+AFGL++ 
Sbjct: 564 SHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNT 623

Query: 520 APRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            P G  L I KNLR+C DCHE+ K+IS++V REIVVRDV R+H F +G C+CGD W
Sbjct: 624 GP-GTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 167/373 (44%), Gaps = 11/373 (2%)

Query: 38  NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLP 97
            LI +Y++   +  + ++F+  P   + +W A+I A+S             R  +    P
Sbjct: 44  KLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRP 103

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           +  T   + K C   S     G      ++     D  F G+A+++ Y++    D A +V
Sbjct: 104 DSSTYTVVLKACTR-SLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRV 162

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           FD++  RD+VC+  MI G AQN +  +++ ++  M    V      + G ++A   L   
Sbjct: 163 FDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHS 222

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
           +    IHG+ +   +  +VIV T L+D Y K G +  A  VF   L   N I+W+A+++G
Sbjct: 223 KMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRML-YKNVISWSALISG 281

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYK 334
           +AQ G     L+L   ++  G+ PD  S ++VL A    G   L      +I R     +
Sbjct: 282 FAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVR-----R 336

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           L       T +I    + G L  A  +   + F  D+  W A+++   IHG  + A  + 
Sbjct: 337 LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFR-DSISWNAIIASYGIHGSGEEALSLF 395

Query: 395 KRLIDINPYDDSA 407
            ++ + N   D A
Sbjct: 396 LQMRETNVKPDHA 408



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 121/256 (47%), Gaps = 11/256 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D  +  +L+  Y+K+  L  +  +F  +   N++SW+ALIS  + +  + N    ++   
Sbjct: 240 DVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQ 299

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           +  + P+  +L S+   C+ +   FL  G S+H   ++  LH      +A++  YS+  S
Sbjct: 300 SFGYKPDSVSLVSVLLACSQV--GFLKLGKSVHGYIVR-RLHFDCVSSTAVIDMYSKCGS 356

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
              A+ VFD+I  RD + + A+I  +  +    ++LS+F  MR ++V       +  L A
Sbjct: 357 LSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSA 416

Query: 211 AAELAAMEQCR----VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            +    +E+ R    ++     +   +++      ++D   +AG V +A+ + +  ++  
Sbjct: 417 FSHSGLVEKGRYWFSIMVNEYKIQPSEKHYAC---MVDLLSRAGRVEEAQELIESMITEP 473

Query: 267 NSIAWNAMMAGYAQQG 282
               W A+++G    G
Sbjct: 474 GIAIWVALLSGCLNHG 489



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 128/284 (45%), Gaps = 10/284 (3%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H+L +   +       + L+  Y+R    ++A++VFD+  +  V  + AMI+ +++   
Sbjct: 26  IHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGA 85

Query: 182 LVDSLSVFADMRSSDV--GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
           + ++LS++  M S  V   S+ Y V   L+A      +         AV  G   +V VG
Sbjct: 86  MFEALSLYHRMASEGVRPDSSTYTV--VLKACTRSLDLRSGEETWRQAVDQGYGDDVFVG 143

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
             +++ Y K G + +A RVFD+ +   + + W  M+ G AQ G     ++++  +  +  
Sbjct: 144 AAVLNLYAKCGKMDEAMRVFDK-MGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRV 202

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
             D    L ++ A    G +      I    +R  +   +   T L+    + G LE A 
Sbjct: 203 EGDGVVMLGLIQACTTLGHSKMGLS-IHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELAS 261

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
            +   M ++ +   W AL+S  A +G A  A ++   ++D+  +
Sbjct: 262 CVFRRMLYK-NVISWSALISGFAQNGFAGNALQL---VVDMQSF 301



 Score = 38.9 bits (89), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 17/172 (9%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNS 77
           VH   ++    D      +I  YSK   LS++  +F+ I   + +SW A+I++   H + 
Sbjct: 329 VHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSG 388

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-----FGLSLHSLSLKLSLH 132
             +L++FL M R   +   P+  T ASL    ++ SH+ L     +  S+     K+   
Sbjct: 389 EEALSLFLQM-RETNVK--PDHATFASLL---SAFSHSGLVEKGRYWFSIMVNEYKIQPS 442

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDE-IRERDVVCYGAMIVGFAQNSRLV 183
           +K +  + +V   SR    + A+++ +  I E  +  + A++ G   + + +
Sbjct: 443 EKHY--ACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFL 492


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 193/568 (33%), Positives = 301/568 (52%), Gaps = 7/568 (1%)

Query: 11  PQNTSTDPRIVHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           P  ++  P+I H+ A++      D  +    +  Y K+  L  +  LF  +P+ N+V+W 
Sbjct: 131 PPRSTIGPQI-HSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWN 189

Query: 69  ALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           A+++        L    +         LPN  +  + F  CA   +  L G   H   +K
Sbjct: 190 AVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSL-GEQFHGFVVK 248

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
                     +++V FY + R    A+ VFD +  R+ V + +M+  +AQN    ++ + 
Sbjct: 249 CGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAA 308

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           +   R S    T + VS AL   A L  +   R +H  AV S +D N+ V + L+D YGK
Sbjct: 309 YLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGK 368

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFL 307
            G V DA ++F E     N + WNAM+ GYA  GD    L +F  +   G  AP+  + +
Sbjct: 369 CGCVEDAEQIFYETPQ-RNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLV 427

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            V+T+    GL  +  +  E M+ R+ +EP  EHY C++  +GRAG  E A  +   MP 
Sbjct: 428 NVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPM 487

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            P  +VW ALL    +HGK ++     ++L +++P D   +V+++N+ +  GRW E  ++
Sbjct: 488 RPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDI 547

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           RK MK+  ++K+ G SW+  K  VHVF A D  HE   +I   L++L ++ +  GY+P  
Sbjct: 548 RKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDT 607

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
              L+++ + EK   ++ HSEKLALAFGL+   P G  +RI+KNLRIC DCH +FK+IS 
Sbjct: 608 QYSLYDLEEEEKESEVFQHSEKLALAFGLIC-IPPGVPIRIMKNLRICVDCHRAFKFISG 666

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +V REI+VRD NR+H F    C+CGD W
Sbjct: 667 IVGREIIVRDNNRFHHFKQYQCSCGDYW 694



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 188/426 (44%), Gaps = 15/426 (3%)

Query: 19  RIVHARALK--SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AH 74
           R  HARAL+  +      I  +L+  YSK +L + +       P P +VS+TA IS  A 
Sbjct: 35  RAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQ 94

Query: 75  SNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LH 132
              PL +L+ F  MLR   L   PN  T  S FK  AS       G  +HSL+++   L 
Sbjct: 95  HGRPLPALSAFAGMLR---LGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLP 151

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
             PF   A +  Y +      A+ +F E+  R+VV + A++     + R ++++  +  +
Sbjct: 152 VDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGL 211

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R +     +        A A    +      HG  V  G + +V V   ++D YGK    
Sbjct: 212 REAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCA 271

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD  + V NS++W +M+A YAQ G +      +      G  P ++   + LT 
Sbjct: 272 GKARAVFD-GMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTT 330

Query: 313 LCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
              AGL G    + +  + VR  ++  +   + L+   G+ G +EDAE+I    P + + 
Sbjct: 331 C--AGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP-QRNL 387

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
             W A++   A  G A  A  +   +I       + Y+ + NV++   R     +  ++ 
Sbjct: 388 VTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPN-YITLVNVITSCSRGGLTKDGYELF 446

Query: 432 KDRRVR 437
           +  R R
Sbjct: 447 ETMRER 452



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKL-SLHDKPFCGSALVHFYSRFRSPDNAKK 156
           + + LA+ F++ A  S +   G + H+ +L+L +    PF  + LV+ YS+   P  A  
Sbjct: 14  DPQLLAAAFES-AIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAA 72

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
                    VV Y A I G AQ+ R + +LS FA M    +    +    A +AAA    
Sbjct: 73  ALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPP 132

Query: 217 MEQC-RVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
                  IH  A+  G L  +  V    +D Y K G +  AR +F E +   N +AWNA+
Sbjct: 133 RSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGE-MPNRNVVAWNAV 191

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           M      G     +E +  L   G  P+  S  A   A   A
Sbjct: 192 MTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGA 233


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 204/593 (34%), Positives = 315/593 (53%), Gaps = 41/593 (6%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HS 75
           R +HAR LK   A        L++ Y+KS LL  +L LF+  P  +I  +++L++A  HS
Sbjct: 105 RGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHS 164

Query: 76  NSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            SP L+L I   ML    L   P+   ++S+    A L    L G  LH+  +    +  
Sbjct: 165 ASPELALPILRCMLSADALH--PDHFVISSVASVFARLRSRRL-GRQLHAHFVVSPYNGD 221

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               S+LV  Y +  SPD+ +KVFD +  ++ V + A++ G+A N R  ++L +F  M  
Sbjct: 222 DVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPG 281

Query: 195 SDVGSTMYCVSG--------------------------------ALRAAAELAAMEQCRV 222
            ++ +    +SG                                 +  +A+LAA    R 
Sbjct: 282 RNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQ 341

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +HG  +  G   N+IVG  LID Y K   +  AR VF E ++  + I+W  M+ G AQ G
Sbjct: 342 LHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVF-EGITFRDVISWTTMVVGEAQHG 400

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                L L+  + + G  P+E +F+ ++ A  +AGL  +  +  E MK  Y + P L+HY
Sbjct: 401 RAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHY 460

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
           TC +  + R+G L +AE +   MP+EPD A W ALLS    +  A+M  ++  +L+++ P
Sbjct: 461 TCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRP 520

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
            D S Y++++NV +  G+WD VA+VRK M    +RKE G SWIE   +  +F AG+   +
Sbjct: 521 KDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLD 580

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
             E+I   L E++ E  + GYVP    ++H++ + EK   L+ HSE+LA+AFGL+   P 
Sbjct: 581 VREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPP- 639

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           G  +R+VKNLR+C DCH   K IS +  R+IVVRD +R+H F  G C+C + W
Sbjct: 640 GSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 204/593 (34%), Positives = 315/593 (53%), Gaps = 41/593 (6%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HS 75
           R +HAR LK   A        L++ Y+KS LL  +L LF+  P  +I  +++L++A  HS
Sbjct: 23  RGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHS 82

Query: 76  NSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            SP L+L I   ML    L   P+   ++S+    A L    L G  LH+  +    +  
Sbjct: 83  ASPELALPILRCMLSADALH--PDHFVISSVASVFARLRSRRL-GRQLHAHFVVSPYNGD 139

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               S+LV  Y +  SPD+ +KVFD +  ++ V + A++ G+A N R  ++L +F  M  
Sbjct: 140 DVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPG 199

Query: 195 SDVGSTMYCVSG--------------------------------ALRAAAELAAMEQCRV 222
            ++ +    +SG                                 +  +A+LAA    R 
Sbjct: 200 RNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQ 259

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +HG  +  G   N+IVG  LID Y K   +  AR VF E ++  + I+W  M+ G AQ G
Sbjct: 260 LHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVF-EGITFRDVISWTTMVVGEAQHG 318

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                L L+  + + G  P+E +F+ ++ A  +AGL  +  +  E MK  Y + P L+HY
Sbjct: 319 RAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHY 378

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
           TC +  + R+G L +AE +   MP+EPD A W ALLS    +  A+M  ++  +L+++ P
Sbjct: 379 TCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRP 438

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
            D S Y++++NV +  G+WD VA+VRK M    +RKE G SWIE   +  +F AG+   +
Sbjct: 439 KDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLD 498

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
             E+I   L E++ E  + GYVP    ++H++ + EK   L+ HSE+LA+AFGL+   P 
Sbjct: 499 VREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPP- 557

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           G  +R+VKNLR+C DCH   K IS +  R+IVVRD +R+H F  G C+C + W
Sbjct: 558 GSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 194/572 (33%), Positives = 317/572 (55%), Gaps = 22/572 (3%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +HA ALK+   D + +  + L+  Y     +    R+F+ +    I  W A+I+ ++ + 
Sbjct: 320 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNE 379

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               +L +F+ M    +   L N  T+A +   C   S AF    ++H   +K  L    
Sbjct: 380 YDEEALLLFIEM--EESAGLLANSTTMAGVVPACVR-SGAFSKKEAIHGFVVKRGLDRDR 436

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM--- 192
           F  +AL+  YSR    D AK++F ++ +RD+V +  +I G+  + R  D+L +   M   
Sbjct: 437 FVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQIL 496

Query: 193 ------RSSDVGSTMYCVS--GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
                 R+S V      ++    L + A L+A+ + + IH +A+ + L  +V VG+ L+D
Sbjct: 497 ERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 556

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G +  +R+VFD+ + + N I WN ++  Y   G+    +++  ++ ++G  P+E 
Sbjct: 557 MYAKCGCLQMSRKVFDQ-IPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEV 615

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F++V  A  ++G+  E  K    MK  Y +EP  +HY C++  +GRAGR+++A ++   
Sbjct: 616 TFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINL 675

Query: 365 MPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           +P   D A  W +LL    IH   ++     + LI + P   S YV++AN+ S  G W +
Sbjct: 676 IPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYK 735

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
             EVR+ MK + VRKE G SWIE   +VH F+AGD  H ++E +   L  L E   + GY
Sbjct: 736 ATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGY 795

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           +P    +LHNV + EK   L  HSEKLA+AFG+++ +P G  +R+ KNLR+C DCH + K
Sbjct: 796 IPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSP-GTIIRVAKNLRVCNDCHLATK 854

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +IS+VV+REI++RDV R+H F NG+C+CGD W
Sbjct: 855 FISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 156/364 (42%), Gaps = 17/364 (4%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRH 90
           ++ N L+  Y K        ++F+ I   N VSW +LIS+        ++L  F  ML  
Sbjct: 130 TVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDE 189

Query: 91  PTLSFLPNQRTLASLFKTCAS--LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                 P+  TL S+   C++  +    L G  +H+  L+       F  + LV  Y + 
Sbjct: 190 ---DVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKM 245

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               ++K +      RD+V +  ++    QN + +++L    +M    V    + +S  L
Sbjct: 246 GKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVL 305

Query: 209 RAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
            A + L  +   + +H +A+ +G LD N  VG+ L+D Y     V    RVFD       
Sbjct: 306 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKI 365

Query: 268 SIAWNAMMAGYAQ-QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
            + WNAM+ GYAQ + D+  +L    + E  G   +  +   V+ A   +G   + E  I
Sbjct: 366 GL-WNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEA-I 423

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS---FSAI 383
               V+  L+        L+    R G+++ A+RI   M  + D   W  +++   FS  
Sbjct: 424 HGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKME-DRDLVTWNTIITGYVFSER 482

Query: 384 HGKA 387
           H  A
Sbjct: 483 HEDA 486


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 174/437 (39%), Positives = 263/437 (60%), Gaps = 2/437 (0%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           ++L++ + R    D A+++F ++ E++VV +  MI GF+QN     +LS+F  M    V 
Sbjct: 243 NSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVR 302

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                V  AL A  ++ A++    IH +   +G   N  +GT L+D Y K G +  A RV
Sbjct: 303 PNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRV 362

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E     + + W+ M+ G+A  G     L+ F  ++  G  PDE  FLA+LTA  ++G 
Sbjct: 363 FVETKGK-DLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGN 421

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             +   + E M++ Y +EP ++HYT ++  +GRAGRL++A     +MP  PD  +W AL 
Sbjct: 422 VDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALF 481

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
                H   +MA    ++L+ + P    +YV ++NV + VGRW++V  VR +MK+R V K
Sbjct: 482 CACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEK 541

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
           + G S+IEV+G+VH F+AGD  H R E+I  KL E+    ++ GY+P    +LHN+ + E
Sbjct: 542 DPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEE 601

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K +AL  HSEKLALAFGL+S AP G T+RIVKNLR+C DCH   KY S++  REI++RD+
Sbjct: 602 KEDALGSHSEKLALAFGLISTAP-GSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDI 660

Query: 559 NRYHRFLNGSCTCGDLW 575
            R+H F +G+C+CGD W
Sbjct: 661 KRFHHFKDGTCSCGDYW 677



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 121/282 (42%), Gaps = 9/282 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPT 92
           +N+LI  + ++  L  +  LF  +P  N+VSWT +I+  S +     +L++F  ML    
Sbjct: 242 WNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEE-- 299

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
               PN  T+ S    C  +  A   G  +H+             G+ALV  Y++  +  
Sbjct: 300 -GVRPNDLTVVSALLACTKIG-ALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIK 357

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A +VF E + +D++ +  MI G+A +     +L  F  M+S+ +          L A +
Sbjct: 358 SASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACS 417

Query: 213 ELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
               ++Q         +   ++  +   T ++D  G+AG + +A           + + W
Sbjct: 418 HSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIW 477

Query: 272 NAMM-AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            A+  A  A +  +   L    LL++    P  Y FL+ + A
Sbjct: 478 GALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYA 519



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 116/292 (39%), Gaps = 51/292 (17%)

Query: 122 LHSLSLKLSLHDKPFCGS----ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
           LH +  ++ LH+  F  S     L+      +S D A  +F      ++  + A+I G A
Sbjct: 56  LHQIHAQIFLHNL-FSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLA 114

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           +NSR   S+S F  M    +      +   L++ A L  +   R +HG  +  GL+ +  
Sbjct: 115 ENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSF 174

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           V   L+D Y K G +    ++FDE+       + + WN ++ G  + GD S    LF  +
Sbjct: 175 VRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAM 234

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
             R                 NAG                        +  LI+   R G 
Sbjct: 235 PER-----------------NAG-----------------------SWNSLINGFVRNGD 254

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYD 404
           L+ A  + + MP E +   W  +++  + +G  + A  M  R+++  + P D
Sbjct: 255 LDRARELFVQMP-EKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPND 305


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 193/581 (33%), Positives = 308/581 (53%), Gaps = 38/581 (6%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLS 86
           K   +DR++   L   Y+ S  L +SL L      P  + +T+ I AHS+  L L     
Sbjct: 50  KGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLAL 109

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF-- 144
           +    +   LP   TL++    C  LS     G +LH+ + KL+L    +  +AL+    
Sbjct: 110 LSDMLSEGLLPTAHTLSASLPACRGLS----LGRALHAYAFKLALSGDSYVATALLSMYA 165

Query: 145 -----------------------------YSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
                                        Y+   + D+A+++FD +  +D +C+ AMI G
Sbjct: 166 RAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDG 225

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS-GLDR 234
           + Q+ +  ++L +F  M  S        V   L A A+L  +E  + +H +   S  +  
Sbjct: 226 YTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQL 285

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           NV V T L+D Y K G + DA  VF   +   + + WNAM+ GYA  GD    LE+F  L
Sbjct: 286 NVRVATALVDMYCKCGSLEDAVAVF-HGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQL 344

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
             +G  P + +F+ +L A  ++GL  E   + + M+  Y ++P +EHY C++  +GRAG 
Sbjct: 345 RDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGL 404

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414
           +E+A  +  ++   PDA +W +LL+   +H    +  ++   L+     +   Y++++N+
Sbjct: 405 IEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNI 464

Query: 415 LSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAEL 474
            + VG+W+EVA VR +MK   ++KE G S IE+  KV+ F+AGD  H  T++IY  L ++
Sbjct: 465 YAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKM 524

Query: 475 MEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRI 534
               +  G+VP  + +LH++ +  K +AL  HSEKLA+AFGL+S  P G T++IVKNLR 
Sbjct: 525 NALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRP-GSTIKIVKNLRA 583

Query: 535 CRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           C DCH   K IS++  R+IV RD NR+H F++GSCTCGD W
Sbjct: 584 CSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 175/437 (40%), Positives = 259/437 (59%), Gaps = 2/437 (0%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +A++  Y+++   D A+ +FD + ERD +C+  MI G+AQ+    + L +F  M ++ V 
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                V   L A  +  A+E  R +H +   +G+  NV VGT LID Y K G + DAR V
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E +S  + +AWN+M+ GYA  G     L LF  + M G+ P + +F+ VL A  +AGL
Sbjct: 130 F-ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGL 188

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E  K+   MK  Y +EP +EHY C+++ +GRAG LE+A  +   M  + D  +W  LL
Sbjct: 189 VSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLL 248

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               +HG   +  ++ + L+  N  +   YV+++N+ +  G W+ VA VR +MK+    K
Sbjct: 249 GACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEK 308

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
           E G S IEV  KVH FLAGD  H ++ +IY  L E+    +  GY P  D +LH++ D +
Sbjct: 309 EPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQ 368

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K  +L  HSEKLALAFGL++  P G T++IVKNLR+C DCH   K IS++  R++V+RD 
Sbjct: 369 KERSLGVHSEKLALAFGLITTKP-GTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDR 427

Query: 559 NRYHRFLNGSCTCGDLW 575
           NR+H F+NG C+CGD W
Sbjct: 428 NRFHHFVNGLCSCGDYW 444



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 6/204 (2%)

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
           +++++  T +I  Y K G++ +AR +FD  L   ++I WN M+ GYAQ G  +  L LF 
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFD-GLEERDAICWNVMIDGYAQHGLPNEGLLLFR 61

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
            +      P+E + LAVL+A C    A E+ +W+        +   +   T LI    + 
Sbjct: 62  QMLNAKVRPNEVTVLAVLSA-CGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR--LIDINPYDDSAYVI 410
           G LEDA R+        D   W +++   A+HG +  A ++ K   +I   P  D  ++ 
Sbjct: 121 GSLEDA-RLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQP-TDITFIG 178

Query: 411 VANVLSGVGRWDEVAEVRKVMKDR 434
           V N  S  G   E  +    MKD 
Sbjct: 179 VLNACSHAGLVSEGWKFFYSMKDE 202



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 106/246 (43%), Gaps = 2/246 (0%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           +IT Y+K  ++  +  LF+ +   + + W  +I  ++   L     L   +       PN
Sbjct: 12  MITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPN 71

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
           + T+ ++   C   + A   G  +HS      +      G++L+  YS+  S ++A+ VF
Sbjct: 72  EVTVLAVLSACGQ-TGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM- 217
           + I  +DVV + +M+VG+A +    D+L +F +M       T     G L A +    + 
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
           E  +  +      G++  V     +++  G+AG + +A  +        + + W  ++  
Sbjct: 191 EGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGA 250

Query: 278 YAQQGD 283
               G+
Sbjct: 251 CRLHGN 256


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 208/625 (33%), Positives = 322/625 (51%), Gaps = 63/625 (10%)

Query: 9   PQPQNTST--DPRIVHARALKSSQADRSIYNNLITNY-SKSNL----LSYSLRLFNHIPS 61
           PQ     T  D   +HA  +KS Q   ++    I  + + S+L    L Y+ ++FN +P 
Sbjct: 21  PQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQ 80

Query: 62  PNIVSWTALISAHSNSP-----LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
            N  SW  +I   S S      +++ +F  M+    +   PN+ T  S+ K CA  +   
Sbjct: 81  RNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIE--PNRFTFPSVLKACAK-TGKI 137

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFY------------------------------- 145
             G  +H L+LK       F  S LV  Y                               
Sbjct: 138 QQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKR 197

Query: 146 --------------SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                          R      A+ +FD++R+R VV +  MI G++QN    D++ VF +
Sbjct: 198 DGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFRE 257

Query: 192 MRS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           M+   D+      +   L A + L ++E    +H +A  SG+  + ++G+ LID Y K G
Sbjct: 258 MKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 317

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
           I+  A  VF E L   N I W+AM+ G+A  G     ++ F  +   G  P + +++ +L
Sbjct: 318 IIEKAIMVF-ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 376

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           TA  +AGL  E  ++  +M     LEP +EHY C++  +GR G L++AE   + MP +PD
Sbjct: 377 TACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPD 436

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             +W+ALL    +H   +M  ++   L+D+ P+D  AYV ++N+ +  G W EV+E+R  
Sbjct: 437 DVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLR 496

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK+  +RK+ G SWI++ G +H FL  D  H R ++I + L E+ ++    GY P+  ++
Sbjct: 497 MKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQV 556

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L N+ + +K  AL YHSEK+A AFGL+S +P GK +RIVKNLRIC DCH S K IS+V +
Sbjct: 557 LLNLEEEDKENALHYHSEKMATAFGLISTSP-GKPIRIVKNLRICEDCHSSIKLISKVYK 615

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           R+I VRD  R+H F +GSC+C D W
Sbjct: 616 RKITVRDRKRFHHFQDGSCSCMDYW 640


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 198/533 (37%), Positives = 297/533 (55%), Gaps = 21/533 (3%)

Query: 56  FNHIPSPNIVSWTALISAH----------SNSPLSLNIFLSMLRHPTLSFLPNQRTLASL 105
           F+H P+     W  LI AH          ++SP+S  IF+ M  H      P+  T   L
Sbjct: 17  FSH-PTLESFLWNTLIRAHVQARAQPTGPTHSPIS--IFVRMRFH---GVQPDFHTFPFL 70

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            ++ AS S   L G S+H+  L+  L   PF  ++L+  YS     D A+ +F  + ER+
Sbjct: 71  LQSFASPSLLHL-GRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERN 129

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRS---SDVGSTMYCVSGALRAAAELAAMEQCRV 222
           V+ +  MI G+ +  +  ++L++F +M+    +DV    + +SG L A   L A+E  + 
Sbjct: 130 VISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKW 189

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
            H +    G+  +V++GT LID Y K G V  A  VF       + +AW+AM++G A  G
Sbjct: 190 AHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHG 249

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                + LF  +  +G  P+  +FLAV  A  + GL  E + ++ RM   Y + P ++HY
Sbjct: 250 LAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHY 309

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
            C++   GRAGR+++A  +  +MP EPD  VW ALLS S +HG  +      K+LI++ P
Sbjct: 310 GCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEP 369

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
            +  AYV+++NV +  GRW++V  VR +M+   ++K  G S IEV G +H F  GD  H 
Sbjct: 370 TNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHP 429

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
            T  I+  L E++E  +  GYV    E+L ++ +  K  AL  HSEKLALA+G +  +P 
Sbjct: 430 ETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSP- 488

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           G  +RIVKNLRICRDCH + K IS+V +REI+VRD NR+H F  G C+C D W
Sbjct: 489 GTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 30/312 (9%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           R VHA+ L+   A D  +  +LI+ YS S L+  +  LF  +P  N++SW+ +I+ +   
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRC 143

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                +L +F  M         PN+ T++ +   C  L  A   G   H+   K  +   
Sbjct: 144 GQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLG-ALEHGKWAHAYIDKCGMPVD 202

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEI-RERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
              G+AL+  Y++  S + A  VF  +   +DV+ + AMI G A +    + + +F+ M 
Sbjct: 203 VVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKM- 261

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR-------NVIVGT-----G 241
                     ++  +R  A       C  +HG  V  G D          I+ T      
Sbjct: 262 ----------INQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGC 311

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV-LELFHLLEMRGFA 300
           ++D YG+AG + +A  V        + + W A+++G    GD  T  L L  L+E+    
Sbjct: 312 MVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTN 371

Query: 301 PDEYSFLAVLTA 312
              Y  L+ + A
Sbjct: 372 SGAYVLLSNVYA 383


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 187/575 (32%), Positives = 329/575 (57%), Gaps = 10/575 (1%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPN 63
           L Q       + +    HA+ ++      +I +N++ N YSK  L+  + +LF+ +P  +
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 64  IVSWTALISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
           +VSW  ++ +H+   +   +L +F+ M +  T     ++ T++S+   CA+    F    
Sbjct: 113 LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSC---SEFTVSSVVCACAAKCCVFECK- 168

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            LH  +LK +L    F G+AL+  Y++     +A  VF+ + ER  V + +M+ G+ QN 
Sbjct: 169 QLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNE 228

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              ++L +F   ++  +    + +S AL A A  AA+ + + +   +  +G+  N+ V +
Sbjct: 229 LYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVIS 288

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            LID Y K GI+ +A  VF  ++   N + WNA+++G+++       +  F  ++  G  
Sbjct: 289 SLIDMYAKCGIIEEAYTVFS-SVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGIC 347

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
           P++ ++++VL+A  + GL  +  K+ + M   + + P + HY+C++  +GRAG L +A+ 
Sbjct: 348 PNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKD 407

Query: 361 IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
               MPF+  A++W +LL+   I+   ++A    K L +I P++   +V+++N+ +   R
Sbjct: 408 FIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDR 467

Query: 421 WDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECER 480
           W+EVA  R ++K+ + +KE G+SWIE+K KVH F+ G+R H R  +IY KL +L+ E ++
Sbjct: 468 WEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKK 527

Query: 481 LGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHE 540
           +GY    +  LH+V +  K+E L +HSEKLAL FG++   P G  +RI+KNLRIC DCH 
Sbjct: 528 IGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMV-LPHGAPIRIMKNLRICGDCHS 586

Query: 541 SFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             K  S + EREI+VRD NR+H F NG C+CG+ W
Sbjct: 587 FMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 7/192 (3%)

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           V+  +R++ V    + +  + R  A +  M      H   +  GL  + I    L++ Y 
Sbjct: 38  VWVGIRATHVSELQHLLQSSARNRAAIEGM----ACHAQIIRVGLRADTITSNMLMNMYS 93

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G+V  AR++FDE + V + ++WN M+  + Q GD    L LF  ++  G +  E++  
Sbjct: 94  KCGLVESARKLFDE-MPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVS 152

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           +V+ A C A       K +    ++  L+  +   T L+    + G ++DA  +   MP 
Sbjct: 153 SVVCA-CAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPE 211

Query: 368 EPDAAVWRALLS 379
             D   W ++++
Sbjct: 212 RSDVT-WSSMVA 222


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/550 (34%), Positives = 310/550 (56%), Gaps = 15/550 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           D + +N ++  Y ++  +   +RLF  +P  +++SWT++I     +  S  +L +F  ML
Sbjct: 135 DVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKML 194

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R       P   T A +   CA+ +  F  G+ +H   +KL      F   +L+ FY+  
Sbjct: 195 RS---GVEPTWSTFACVLSACAN-AVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANC 250

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              ++A K+F+E   ++VV + A++  +  N++  D+L VF DM            S  L
Sbjct: 251 MKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITL 310

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +A   L A+++ + IH  A+  GL+ +V VG  L+  Y + G V+ A  VF  N++  + 
Sbjct: 311 KACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVF-RNINEKDI 369

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WN+++ G AQ G     L  F+ +  RG  P+E +F  +L+A   +G+  +   + E 
Sbjct: 370 VSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEY 429

Query: 329 MKVRYK---LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +  RYK   L P  +HY C++  +GR G+L++AE +   MP + ++ +W ALLS   +H 
Sbjct: 430 IS-RYKSNVLRP--QHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHS 486

Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445
             ++A +  K ++D+ P   SAYV+++N+ +  GRW +V+ +R  MK   + K+ G SW+
Sbjct: 487 NLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWV 546

Query: 446 EVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWY 505
            ++GK H FL+ DR H  +E IY KL  L ++ +  GYVP     LH+V D +K E L +
Sbjct: 547 VLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSF 606

Query: 506 HSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFL 565
           HSE+LA+AFGLVS    G T+ ++KNLR+C DCH   K +S++V R+IVVRD  R+H F 
Sbjct: 607 HSERLAIAFGLVS-TVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFK 665

Query: 566 NGSCTCGDLW 575
           NG C+C D W
Sbjct: 666 NGICSCSDYW 675



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 177/415 (42%), Gaps = 36/415 (8%)

Query: 2   ALDLNQQPQPQNTSTDPRIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHI 59
            + L+      N   + R+  AR +  K    +  +Y  +I  Y++++ L  +L+LF+ +
Sbjct: 10  TITLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRM 69

Query: 60  PSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
              ++VSW ++I       N  ++  +F  M     +S+               ++ + +
Sbjct: 70  SVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISW--------------TTMVNGY 115

Query: 117 L-FGLSLHSLSLKLSLHDKPFCG-SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
           L FG    +  L L +H K     +A+VH Y      +   ++F+E+  RDV+ + +MI 
Sbjct: 116 LKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIG 175

Query: 175 GFAQNSRLVDSLSVFADMRSSDVG---STMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           G   N +  ++L VF  M  S V    ST  CV  A   A E     Q   +HGH V  G
Sbjct: 176 GLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQ---VHGHVVKLG 232

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
              +  +   LI  Y     +  A ++F+E L+  N + W A++  Y         L +F
Sbjct: 233 CFFHEFISVSLITFYANCMKIEHAHKIFNETLTK-NVVKWTALLTAYVWNNKHQDALRVF 291

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGL-AGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
             +   G  P++ +F   L A C  GL A +  K I  M ++  LE  +     L+    
Sbjct: 292 GDMTKMGALPNQSTFSITLKACC--GLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYT 349

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA----SKMGKRLIDIN 401
             G +  A  +   +  E D   W +++  SA HG    A    ++M +R +D N
Sbjct: 350 ECGNVNSAVAVFRNIN-EKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPN 403


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 198/556 (35%), Positives = 306/556 (55%), Gaps = 14/556 (2%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLS 86
           Q+D  + + LI  YS    L  + ++F+ IP  NIVSWT++I  +    N+  ++++F  
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKD 167

Query: 87  ML---RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           +L        +   +   + S+   C+ ++   L   S+HS  +K         G+ L+ 
Sbjct: 168 LLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTE-SIHSFVIKRGFDRGVSVGNTLLD 226

Query: 144 FYSRFRSPDNA--KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201
            Y++      A  +K+FD+I ++D V Y +++  +AQ+    ++  VF  +    V  T 
Sbjct: 227 AYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKV-VTF 285

Query: 202 YCV--SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            C+  S  L A +   A+   + IH   +  GL+ +VIVGT +ID Y K G V  AR  F
Sbjct: 286 NCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAF 345

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D  +   N  +W AM+AGY   G  +  LELF  +   G  P+  +F++VL A  +AGL 
Sbjct: 346 DR-MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLH 404

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
                W   MK R+ +EPGLEHY C++  +GRAG L+ A  +   M  EPD+ +W +LL+
Sbjct: 405 DVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLA 464

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IH   ++A     RL +++P +   Y++++++ +  GRW +V  VR  MK+R + K 
Sbjct: 465 ACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKP 524

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S +E+ G+VHVFL GD  H + E IY  LAEL  +    GYV     + H+V + EK
Sbjct: 525 PGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEK 584

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              L  HSEKLA+AFG+++  P G T+ +VKNLR+C DCH   K IS++V+RE VVRD  
Sbjct: 585 EMTLRVHSEKLAIAFGIMNTVP-GSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAK 643

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 644 RFHHFKDGFCSCGDYW 659



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 177/358 (49%), Gaps = 20/358 (5%)

Query: 55  LFN-HIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           LFN ++   ++ SW ++I+      +S  +L  F SM +   LS  P + +     K C+
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRK---LSLYPTRSSFPCAIKACS 87

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
           SL   F  G   H  +         F  SAL+  YS     ++A+KVFDEI +R++V + 
Sbjct: 88  SLLDIFS-GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWT 146

Query: 171 AMIVGFAQNSRLVDSLSVFADM--RSSDVGSTMYCVS----GALRAAAELAAMEQCRVIH 224
           +MI G+  N   +D++S+F D+    +D  +TM+  S      + A + +AA      IH
Sbjct: 147 SMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIH 206

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGI--VSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
              +  G DR V VG  L+D Y K G   V+ AR++FD+ +   + +++N++M+ YAQ G
Sbjct: 207 SFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDK-DRVSYNSIMSVYAQSG 265

Query: 283 DQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
             +   ++F  L++ +    +  +   VL A+ ++G A    K I    +R  LE  +  
Sbjct: 266 MSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSG-ALRIGKCIHDQVIRMGLEDDVIV 324

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
            T +I    + GR+E A R+A       +   W A+++   +HG A  A ++   +ID
Sbjct: 325 GTSIIDMYCKCGRVETA-RLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID 381


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 309/563 (54%), Gaps = 18/563 (3%)

Query: 21   VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
            +HAR+LK  S  +  +  +L++ Y+K  LL  + R+F+ +P P+ V WTALI+A+ ++  
Sbjct: 548  LHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD 607

Query: 79   ------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
                  ++ N F + +R       P+  T   +   CA ++     G ++   + +  + 
Sbjct: 608  LREAVHVARNAFANGMR-------PDSFTAVRVLTACARIAD-LATGETVWRAAEQEGVA 659

Query: 133  DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
               F  +A V  Y +      A++VFD++R +D V +GAM+ G+A N    ++L +F  M
Sbjct: 660  QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 719

Query: 193  RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            ++  +    Y V+GAL A   L A++  R             N ++GT LID Y K G  
Sbjct: 720  QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 779

Query: 253  SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             +A  VF + +   + I WNAM+ G    G +     L   +E  G   ++ +F+ +L +
Sbjct: 780  VEAWVVF-QQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCS 838

Query: 313  LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
              + GL  +  ++   M   Y + P +EHY C++  + RAG L++A ++   MP   +A 
Sbjct: 839  CTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAV 898

Query: 373  VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            +  ALL    IH   ++A  + K+LI + P++   YV+++N+ S  GRW++ A++R  MK
Sbjct: 899  ILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMK 958

Query: 433  DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
             + V K    SW+E +GKVH F  GD+ H  ++ IY KL EL  E + +GY P  + ++ 
Sbjct: 959  AKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMF 1018

Query: 493  NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
            +V D EK   L +HSEKLA+AF L+   P G+T+R+ KNLR+C DCH + K +SR+  RE
Sbjct: 1019 DVEDEEKEHTLVHHSEKLAIAFNLLITGP-GETIRVTKNLRVCSDCHTAIKLVSRITHRE 1077

Query: 553  IVVRDVNRYHRFLNGSCTCGDLW 575
            I+VRD NR+H F +GSC+C D W
Sbjct: 1078 IIVRDNNRFHCFRDGSCSCNDYW 1100



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 1/221 (0%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+  T+    K+ + L H    G  LH+ SLKL  H  P   ++L+  Y++      A++
Sbjct: 523 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 582

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VFDE+     V + A+I  +     L +++ V  +  ++ +    +     L A A +A 
Sbjct: 583 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 642

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +     +   A   G+ ++V V T  +D Y K G ++ AR VFD+ +   +++AW AM+ 
Sbjct: 643 LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDK-MRHKDAVAWGAMVG 701

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           GYA  G     L+LF  ++  G  PD Y+    L+A    G
Sbjct: 702 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLG 742


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 179/562 (31%), Positives = 309/562 (54%), Gaps = 12/562 (2%)

Query: 17  DPRIVHARAL-KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D + +H  A+ +    D  + N+LI  Y+K     ++  +F+ +   N++S+T++I A++
Sbjct: 49  DGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYT 108

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK- 134
           ++   +  +    +  +   +P+    A+    C ++      G ++H   +KL  H++ 
Sbjct: 109 HTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPTIRE----GEAIH---VKLGNHERR 161

Query: 135 -PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
            P C +ALV  Y RF    +AK VFD IR +D+  Y  MI  FA+      ++S++ +M 
Sbjct: 162 TPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEME 221

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             ++   ++  +  L A ++L A+ + + IH          +V   T L++ Y K G   
Sbjct: 222 GRNLEPNLWTYTSVLDACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSAH 281

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +AR VF+ +  + N   W ++M+ Y+Q G     LE +  +   G  PD+ +F A+  A 
Sbjct: 282 EARAVFN-DCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNAC 340

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            ++GL  E   +   M+  + + P   HYTC+I  +GR GRL +AE +   MP+ PD   
Sbjct: 341 SHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVT 400

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W  LLS   ++G   + ++  KR+ ++NP D   Y+++ N+ +  G+W +VAEV+K++K 
Sbjct: 401 WTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQ 460

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R + K  G+S IE + ++H F+ GD  H   ++I  +L E+ E+    GY P   E+L +
Sbjct: 461 RGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVD 520

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V +  K E L +HSE++AL  GL++ +  G TL IVKNLRIC DCH  FK +S+++ R++
Sbjct: 521 VNEEVKPELLLFHSERMALGLGLLT-SDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKV 579

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           +VRD +R+H F  GSC+CGD W
Sbjct: 580 LVRDSHRFHIFQRGSCSCGDYW 601



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 22/267 (8%)

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA--AMEQCRVIHGHAVVSGL 232
            + +N     +L +F    + ++          L++ A L    +E  + IH HA+  G 
Sbjct: 3   AYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQGF 62

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
             +++V   LI  Y K G    A  VFD+ +   N I++ +M+  Y          EL+ 
Sbjct: 63  GTDLVVQNSLIHMYAKCGSFKFAAGVFDK-MEPKNLISYTSMIQAYTHTAKHVEAYELYK 121

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
            +   G  PD Y++ A L A+C     GE+     ++    +  P   +   L+   GR 
Sbjct: 122 KMLSEGIMPDIYAYAAAL-AVCPTIREGEAIHV--KLGNHERRTPVCSN--ALVGMYGRF 176

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK-------MGKRLIDINPYDD 405
           GR+  A+ +   + ++ D A +  ++   A+  K D  SK       M  R ++ N +  
Sbjct: 177 GRIASAKWVFDGIRYK-DLASYNNMI---AVFAKYDDGSKAISLYIEMEGRNLEPNLW-- 230

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMK 432
             Y  V +  S +G   E  E+ K +K
Sbjct: 231 -TYTSVLDACSKLGALTEGKEIHKKVK 256


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 185/558 (33%), Positives = 325/558 (58%), Gaps = 10/558 (1%)

Query: 22  HARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NS 77
           HA+ ++      +I +N++ N YSK  L+  + +LF+ +P  ++VSW  ++ +H+   + 
Sbjct: 43  HAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDC 102

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L +F+ M +  T     ++ T++S+   CA+    F     LH  +LK +L    F 
Sbjct: 103 EKALVLFMQMQKEGTSC---SEFTVSSVVCACAAKCCVFECK-QLHGFALKTALDSNVFV 158

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  Y++     +A  VF+ + ER  V + +M+ G+ QN    ++L +F   ++  +
Sbjct: 159 GTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 218

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               + +S AL A A  AA+ + + +   +  +G+  N+ V + LID Y K GI+ +A  
Sbjct: 219 EHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYT 278

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF  ++   N + WNA+++G+++       +  F  ++  G  P++ ++++VL+A  + G
Sbjct: 279 VFS-SVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLG 337

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  +  K+ + M   + + P + HY+C++  +GRAG L +A+     MPF+  A++W +L
Sbjct: 338 LVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSL 397

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L+   I+   ++A    K L +I P++   +V+++N+ +   RW+EVA  R ++K+ + +
Sbjct: 398 LASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAK 457

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           KE G+SWIE+K KVH F+ G+R H R  +IY KL +L+ E +++GY    +  LH+V + 
Sbjct: 458 KERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEES 517

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            K+E L +HSEKLAL FG++   P G  +RI+KNLRIC DCH   K  S + EREI+VRD
Sbjct: 518 RKQELLRHHSEKLALTFGIMV-LPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRD 576

Query: 558 VNRYHRFLNGSCTCGDLW 575
            NR+H F NG C+CG+ W
Sbjct: 577 TNRFHHFKNGYCSCGEFW 594



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 153/307 (49%), Gaps = 6/307 (1%)

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
           A + G++ H+  +++ L       + L++ YS+    ++A+K+FDE+  R +V +  M+ 
Sbjct: 35  AAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVG 94

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
              QN     +L +F  M+      + + VS  + A A    + +C+ +HG A+ + LD 
Sbjct: 95  SHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDS 154

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           NV VGT L+D Y K G+V DA  VF E +   + + W++M+AGY Q       L LFH  
Sbjct: 155 NVFVGTALLDVYAKCGLVKDANLVF-ECMPERSDVTWSSMVAGYVQNELYEEALVLFHRA 213

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
           +  G   ++++  + L+A        E  K ++ +  +  +   +   + LI    + G 
Sbjct: 214 QAMGLEHNQFTISSALSACAARAALIEG-KQVQAVSCKTGIGSNIFVISSLIDMYAKCGI 272

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVA 412
           +E+A  +  ++  E +  +W A+LS  + H ++  A    +++  + I P +D  Y+ V 
Sbjct: 273 IEEAYTVFSSVE-EKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICP-NDITYISVL 330

Query: 413 NVLSGVG 419
           +  S +G
Sbjct: 331 SACSHLG 337



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 7/192 (3%)

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           V+  +R++ V    + +  + R  A +  M      H   +  GL  + I    L++ Y 
Sbjct: 11  VWVGIRATHVSELQHLLQSSARNRAAIEGM----ACHAQIIRVGLRADTITSNMLMNMYS 66

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G+V  AR++FDE + V + ++WN M+  + Q GD    L LF  ++  G +  E++  
Sbjct: 67  KCGLVESARKLFDE-MPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVS 125

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           +V+ A C A       K +    ++  L+  +   T L+    + G ++DA  +   MP 
Sbjct: 126 SVVCA-CAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPE 184

Query: 368 EPDAAVWRALLS 379
             D   W ++++
Sbjct: 185 RSDVT-WSSMVA 195


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 309/563 (54%), Gaps = 18/563 (3%)

Query: 21   VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
            +HAR+LK  S  +  +  +L++ Y+K  LL  + R+F+ +P P+ V WTALI+A+ ++  
Sbjct: 572  LHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGD 631

Query: 79   ------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
                  ++ N F + +R       P+  T   +   CA ++     G ++   + +  + 
Sbjct: 632  LREAVHVARNAFANGMR-------PDSFTAVRVLTACARIAD-LATGETVWRAAEQEGVA 683

Query: 133  DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
               F  +A V  Y +      A++VFD++R +D V +GAM+ G+A N    ++L +F  M
Sbjct: 684  QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 743

Query: 193  RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            ++  +    Y V+GAL A   L A++  R             N ++GT LID Y K G  
Sbjct: 744  QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGST 803

Query: 253  SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             +A  VF + +   + I WNAM+ G    G +     L   +E  G   ++ +F+ +L +
Sbjct: 804  VEAWVVF-QQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCS 862

Query: 313  LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
              + GL  +  ++   M   Y + P +EHY C++  + RAG L++A ++   MP   +A 
Sbjct: 863  CTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAV 922

Query: 373  VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            +  ALL    IH   ++A  + K+LI + P++   YV+++N+ S  GRW++ A++R  MK
Sbjct: 923  ILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMK 982

Query: 433  DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
             + V K    SW+E +GKVH F  GD+ H  ++ IY KL EL  E + +GY P  + ++ 
Sbjct: 983  AKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMF 1042

Query: 493  NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
            +V D EK   L +HSEKLA+AF L+   P G+T+R+ KNLR+C DCH + K +SR+  RE
Sbjct: 1043 DVEDEEKEHTLVHHSEKLAIAFNLLITGP-GETIRVTKNLRVCSDCHTAIKLVSRITHRE 1101

Query: 553  IVVRDVNRYHRFLNGSCTCGDLW 575
            I+VRD NR+H F +GSC+C D W
Sbjct: 1102 IIVRDNNRFHCFRDGSCSCNDYW 1124



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 1/221 (0%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+  T+    K+ + L H    G  LH+ SLKL  H  P   ++L+  Y++      A++
Sbjct: 547 PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 606

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VFDE+     V + A+I  +     L +++ V  +  ++ +    +     L A A +A 
Sbjct: 607 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIAD 666

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +     +   A   G+ ++V V T  +D Y K G ++ AR VFD+ +   +++AW AM+ 
Sbjct: 667 LATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDK-MRHKDAVAWGAMVG 725

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           GYA  G     L+LF  ++  G  PD Y+    L+A    G
Sbjct: 726 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLG 766


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 187/547 (34%), Positives = 305/547 (55%), Gaps = 10/547 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           D + +N+++  +  +  +  ++ LF  +P+ N++SWT++I     +  S  +L +F  ML
Sbjct: 173 DVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKML 232

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                SF     TLA     CA++   F+ G+ +H L +K       +  ++L+ FY+  
Sbjct: 233 A----SFKATSSTLACALTACANICTPFI-GVQIHGLIVKTGYCFNEYISASLISFYANC 287

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           +  DNA  +F++   R+VV + A++ G+  N R  D+L VF  M    V      ++ AL
Sbjct: 288 KLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSAL 347

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            +   L A+++ R +H  A   GL+ ++ V   L+  Y K G ++D   VF   +S  N 
Sbjct: 348 NSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTR-MSRKNV 406

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WN+++ G AQ G     L LF  +      PDE +   +L+A  ++G+  +   + + 
Sbjct: 407 VSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKH 466

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
               + +E   EHY+ ++  +GR G+LE+AE +   MP + +  VW ALLS S  H    
Sbjct: 467 FGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINHSNVH 526

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +A +  K ++D+ P   +AY +++N+ +  G+W EV+++RK MKD  + K+ G SWI +K
Sbjct: 527 VAERAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIK 586

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
           G  H F++GD+ H  +  IY KL  L  + + LGYVP      H+V   +K E L YHSE
Sbjct: 587 GIKHNFISGDQSHPLSRKIYQKLEWLGGKLKELGYVPDPKFSFHDVETEQKEEMLSYHSE 646

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           +LA+ FGL+S    G T+ ++KNLRIC DCH + K  S+VV REIVVRD +R+H F NG+
Sbjct: 647 RLAIGFGLISTV-EGSTIIVMKNLRICGDCHNAVKLTSKVVGREIVVRDPSRFHHFHNGT 705

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 706 CSCGDYW 712



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 177/434 (40%), Gaps = 53/434 (12%)

Query: 38  NLITNYSKSNLLSYSLR---------LFNHIPSPNIVSWTALISAHSNSPL---SLNIFL 85
           +++T    + LLS+ LR         LFN + SP +  +T +I  +++      +L +F 
Sbjct: 46  SILTTPPSNYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFY 105

Query: 86  SMLRHPTLSFLPNQRTLASLFKTCASLSHA----------------------FLFG-LSL 122
            M   P    +     L    K C  L+ A                        FG + +
Sbjct: 106 EM---PVKDLISWNSMLKGCLK-CGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEV 161

Query: 123 HSLSLKLSLHDKPFCGSALVH-FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
                ++         +++VH F+S  R  D A ++F+++  R+V+ + ++I G   N R
Sbjct: 162 AECLFRVMPTKDVTAWNSMVHGFFSNGRVED-AIELFEKMPNRNVISWTSVIGGLDHNGR 220

Query: 182 LVDSLSVFADMRSS--DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
             ++L VF  M +S     ST+ C   AL A A +        IHG  V +G   N  + 
Sbjct: 221 SFEALVVFHKMLASFKATSSTLAC---ALTACANICTPFIGVQIHGLIVKTGYCFNEYIS 277

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
             LI  Y    ++ +A  +F++N+S  N + W A++ GY      +  L++F  +     
Sbjct: 278 ASLISFYANCKLIDNASSIFNDNVS-RNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSV 336

Query: 300 APDEYSFLAVLTALCNAGL-AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
            P++ S  + L + C  GL A +  + +  +  +  LE  +     L+    + G + D 
Sbjct: 337 LPNQSSLTSALNSCC--GLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDG 394

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
             +   M    +   W +++   A HG    A  +  ++I      D   + +A +LS  
Sbjct: 395 IAVFTRMS-RKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDE--ITLAGLLSAC 451

Query: 419 GRWDEVAEVRKVMK 432
           G    + + R   K
Sbjct: 452 GHSGMLTKGRCFFK 465



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 22/245 (8%)

Query: 92  TLSFLPNQRTLA-SLFKTCASL-SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
           T   LP    L+ S+ +T +SL S+  LFG      + KLS+   P   + L+ F+ R  
Sbjct: 12  TTKILPFSFQLSVSIVRTTSSLISYICLFG------TKKLSILTTP-PSNYLLSFHLRNG 64

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
             D A+ +F+++    V  Y  MI G+A   RL D+L +F +M   D+ S    + G L+
Sbjct: 65  RIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLISWNSMLKGCLK 124

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
                 A   C +    +     +RNV+  T +I+G  + G V  A  +F   +   +  
Sbjct: 125 CGDLTMA---CNMFDKMS-----ERNVVSWTTIINGLLEFGRVEVAECLF-RVMPTKDVT 175

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           AWN+M+ G+   G     +ELF  +  R    +  S+ +V+  L + G + E+     +M
Sbjct: 176 AWNSMVHGFFSNGRVEDAIELFEKMPNR----NVISWTSVIGGLDHNGRSFEALVVFHKM 231

Query: 330 KVRYK 334
              +K
Sbjct: 232 LASFK 236



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
           PG+  YT +I      GRLEDA ++   MP + D   W ++L      G   MA  M  +
Sbjct: 79  PGVNLYTMMIGGYADEGRLEDALKLFYEMPVK-DLISWNSMLKGCLKCGDLTMACNMFDK 137

Query: 397 LIDINPYDDSAYVIVANVLSGVGRWDEVAE-VRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
           + + N     ++  + N L   GR  EVAE + +VM  + V      +W      VH F 
Sbjct: 138 MSERNVV---SWTTIINGLLEFGR-VEVAECLFRVMPTKDV-----TAW---NSMVHGFF 185

Query: 456 AGDRMHERTE 465
           +  R+ +  E
Sbjct: 186 SNGRVEDAIE 195



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAH 74
           R VHA A K   ++D  + N+L+  Y+K   ++  + +F  +   N+VSW ++I   + H
Sbjct: 360 REVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQH 419

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
                +L +F  M+R       P++ TLA L   C 
Sbjct: 420 GFGRWALTLFAQMIR---TRVDPDEITLAGLLSACG 452


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 196/555 (35%), Positives = 308/555 (55%), Gaps = 12/555 (2%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLS 86
           Q+D  + + LI  YS    L  + ++F+ IP  NIVSWT++I  +    N+  ++++F  
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKD 167

Query: 87  ML---RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           +L        +   +   L S+   C+ +    L   S+HS  +K         G+ L+ 
Sbjct: 168 LLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE-SIHSFVIKRGFDRGVSVGNTLLD 226

Query: 144 FYSRFRSPDNA--KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGST 200
            Y++      A  +K+FD+I ++D V Y +++  +AQ+    ++  VF  + ++  V   
Sbjct: 227 AYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFN 286

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
              +S  L A +   A+   + IH   +  GL+ +VIVGT +ID Y K G V  AR+ FD
Sbjct: 287 AITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFD 346

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
             +   N  +W AM+AGY   G  +  LELF  +   G  P+  +F++VL A  +AGL  
Sbjct: 347 R-MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHV 405

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           E  +W   MK R+ +EPGLEHY C++  +GRAG L+ A  +   M  +PD+ +W +LL+ 
Sbjct: 406 EGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAA 465

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
             IH   ++A     RL +++  +   Y++++++ +  GRW +V  VR +MK+R + K  
Sbjct: 466 CRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPP 525

Query: 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKR 500
           G S +E+ G+VHVFL GD  H + E IY  LAEL  +    GYV     + H+V + EK 
Sbjct: 526 GFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKE 585

Query: 501 EALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNR 560
             L  HSEKLA+AFG+++  P G T+ +VKNLR+C DCH   K IS++V+RE VVRD  R
Sbjct: 586 MTLRVHSEKLAIAFGIMNTVP-GSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKR 644

Query: 561 YHRFLNGSCTCGDLW 575
           +H F +G C+CGD W
Sbjct: 645 FHHFKDGGCSCGDYW 659



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 170/355 (47%), Gaps = 14/355 (3%)

Query: 55  LFN-HIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
           LFN ++   ++ SW ++I+  + S  S    L+      LS  P + +     K C+SL 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
             F  G   H  +         F  SAL+  YS     ++A+KVFDEI +R++V + +MI
Sbjct: 91  DIFS-GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149

Query: 174 VGFAQNSRLVDSLSVFADM--RSSDVGSTMYCVSGAL----RAAAELAAMEQCRVIHGHA 227
            G+  N   +D++S+F D+    +D    M+  S  L     A + + A      IH   
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGI--VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           +  G DR V VG  L+D Y K G   V+ AR++FD+ +   + +++N++M+ YAQ G  +
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD-KDRVSYNSIMSVYAQSGMSN 268

Query: 286 TVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              E+F  L++ +    +  +   VL A+ ++G A    K I    +R  LE  +   T 
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG-ALRIGKCIHDQVIRMGLEDDVIVGTS 327

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           +I    + GR+E A +    M    +   W A+++   +HG A  A ++   +ID
Sbjct: 328 IIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMID 381


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 192/565 (33%), Positives = 314/565 (55%), Gaps = 26/565 (4%)

Query: 22  HARALKSSQ-ADRSIYNNLITNY---SKSNLLSY--SLRLFNHIPSPNIVSWTALISA-- 73
           HA  L++    D  I  +L+ +Y   S +  LS+  SLR+F+ +  PN+  W  +I    
Sbjct: 75  HALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCI 134

Query: 74  HSNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            +N P  ++ ++  M+      F PN+ T  ++ K C+  +     G+ +H+  +K  L 
Sbjct: 135 ENNEPFKAILLYYEMM---VAHFRPNKYTYPAVLKACSD-AGVVAEGVQVHAHLVKHGLG 190

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                 S+ +  Y+ F     A+++ D+   E D VC         +    +++L +F  
Sbjct: 191 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPD------RKGCFMEALEIFHQ 244

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+   +    + +   L A A L A++Q R IH +A  + +  + ++GT L+D Y K G 
Sbjct: 245 MQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGR 304

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  A  VF E +S     +WNAM+ G A  G     ++LF  +++    P+E +F+ VL 
Sbjct: 305 IDLAWEVF-EKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN---PNEITFVGVLN 360

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  +       M+  Y +EP +EHY C++  +GRAG L +AE++  ++P EP  
Sbjct: 361 ACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTP 420

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           AVW ALL     HG  ++  ++GK L+++ P +   Y +++N+ +  GRW+EV EVRK+M
Sbjct: 421 AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLM 480

Query: 432 KDRRVRKEGGRSWIEV-KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           K+R ++   G S I++ +G+VH F+ GD  H + +DIY  L ++ E  +  GY P   ++
Sbjct: 481 KERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQV 540

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L ++ + EK  A+W HSEKLA+ FGL++ +P G T+RIVKNLR+C DCH + K IS+V  
Sbjct: 541 LFDIDEEEKETAVWQHSEKLAIGFGLINTSP-GTTIRIVKNLRVCEDCHSATKLISQVYN 599

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REI+VRD  RYH F NG+C+C D W
Sbjct: 600 REIIVRDRIRYHHFRNGACSCKDFW 624


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 308/572 (53%), Gaps = 24/572 (4%)

Query: 21  VHARALKSSQAD-RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA----HS 75
           VH   +K   A   SI N+L   Y+KS  L   +R F  IP  N+++WT +ISA     +
Sbjct: 201 VHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDEN 260

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            + L LN+FL ML+      +PN+ TL S+   C + S     G  +     K+      
Sbjct: 261 YTELGLNLFLDMLKG---EVMPNEFTLTSVMSLCGT-SLDMNLGKQVQGFCFKIGCATNL 316

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ-----------NSRLVD 184
              ++ ++ Y R    + A ++F+E+ +  V+ + AMI GFAQ            SR   
Sbjct: 317 PVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQ 376

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L +F D+  S +   ++  S  L   + + A+EQ   IH   + +G   +V+V + L++
Sbjct: 377 ALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVN 436

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G +  A + F E +     + W +M++GY+Q G     ++LF  + + G  P+E 
Sbjct: 437 MYNKCGCIEYATKAFVE-MPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEI 495

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F+++L+A   AGL  E+ ++ + M+  Y +EP ++HY C+I    R GRL+DA      
Sbjct: 496 TFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKR 555

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
             FEP+ A+W +L++    HG  ++A     RL+++ P     YV++ N+    GRW +V
Sbjct: 556 KGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDV 615

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
           A VRK+ K   +     RSWI ++ KV+ F A DR H ++ ++Y  L  L+E+ + +GY 
Sbjct: 616 ARVRKLSKHEDLGILRDRSWITIRDKVYFFKADDRSHPQSTELYQLLETLLEKAKAIGYE 675

Query: 485 PVWDEMLHNVGDREKREA--LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           P  +  L++  +  K  A  L +HSE+LA+A GL+  AP G T+RI KN+ +CRDCH S 
Sbjct: 676 PYQNTELYDSEEDGKPAAGSLKHHSERLAVALGLLK-APPGVTVRITKNITMCRDCHSSI 734

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           K+ S +  REIVVRD  R H+F +G C+CGD 
Sbjct: 735 KFFSLLANREIVVRDSKRLHKFKDGRCSCGDF 766



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 180/396 (45%), Gaps = 23/396 (5%)

Query: 19  RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           + +H   +K+    D  +  +L+  Y +      +  LF+ +P  N+V+WTALI+ +   
Sbjct: 98  KALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLN 157

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           S   L+L +F+ ML+   L   P+  TL  +   C + SH    G  +H  ++K      
Sbjct: 158 SQPVLALEVFVEMLK---LGRYPSDYTLGGMLSACVA-SHNIDLGKQVHGYTIKYGAASI 213

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMR 193
              G++L   Y++  + ++  + F  I +++V+ +  MI   A++    +  L++F DM 
Sbjct: 214 TSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDML 273

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             +V    + ++  +        M   + + G     G   N+ V    +  Y + G   
Sbjct: 274 KGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETE 333

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQS-----------TVLELFHLLEMRGFAPD 302
           +A R+F+E +   + I WNAM++G+AQ  D +             L++F  L      PD
Sbjct: 334 EAMRLFEE-MEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPD 392

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
            ++F ++L+ +C+  +A E  + I    ++      +   + L++   + G +E A +  
Sbjct: 393 LFTFSSILS-VCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAF 451

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           + MP       W +++S  + HG+   A ++ + +I
Sbjct: 452 VEMPTR-TLVTWTSMISGYSQHGRPHDAIQLFEDMI 486



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 6/203 (2%)

Query: 181 RLVDSLSVFADMRSSD-VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
           R +D+    A ++    V S MY     L    E  ++   + +HGH V +G   ++ V 
Sbjct: 59  RPLDAQEAMAMLKEGQSVQSAMYV--PLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVA 116

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           T L++ Y + G   DAR +FDE +   N + W A++ GY         LE+F  +   G 
Sbjct: 117 TSLVNVYMRCGNSQDARNLFDE-MPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGR 175

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
            P +Y+   +L+A C A    +  K +    ++Y           L     ++G LE   
Sbjct: 176 YPSDYTLGGMLSA-CVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGI 234

Query: 360 RIAMAMPFEPDAAVWRALLSFSA 382
           R    +P + +   W  ++S  A
Sbjct: 235 RAFKRIP-DKNVITWTTMISACA 256


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 189/558 (33%), Positives = 304/558 (54%), Gaps = 8/558 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA A+K    ++  I N+LI  Y K   + Y    F ++P  +++SWT +I+ ++ +  
Sbjct: 374 VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNEC 433

Query: 80  SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
            L+  L++LR   L  +  +   + S+   C+ L    L    +H   LK  L D     
Sbjct: 434 HLDA-LNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIK-EIHGYVLKGGLAD-ILIQ 490

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +A+V+ Y      D A+ VF+ I  +D+V + +MI     N   +++L +F  +  +++ 
Sbjct: 491 NAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIE 550

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
             +  +   L AAA L+++++ + IHG  +  G     ++   L+D Y + G + +AR +
Sbjct: 551 PDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNI 610

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F+  +   + I W +M+      G     ++LF  +      PD  +FLA+L A  ++GL
Sbjct: 611 FNY-VKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGL 669

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E ++  E MK  YKLEP  EHY CL+  + R+  LE+A      MP EP A VW ALL
Sbjct: 670 VVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALL 729

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               IH   D+     K+L+ +N  +   YV+V+N  +  GRW++V EVR +MK  +++K
Sbjct: 730 GACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKK 789

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC-ERLGYVPVWDEMLHNVGDR 497
           + G SWIEV+ K+H F+A D+ H +  +IY KLA+  +   E+ GY      + H+V + 
Sbjct: 790 KPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEE 849

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           EK + L+ HSE+LAL +GL+  + +G  LRI KNLRIC DCH  FK  S + +R +VVRD
Sbjct: 850 EKTQMLYGHSERLALGYGLLVTS-KGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRD 908

Query: 558 VNRYHRFLNGSCTCGDLW 575
            +R+H F  G C+CGD W
Sbjct: 909 ASRFHHFERGLCSCGDFW 926



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 143/319 (44%), Gaps = 23/319 (7%)

Query: 75  SNSPLSLNIFLSMLRH------PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           S+ P+SL      L H      PT +  P Q+  +   + CAS   A   G  LH+  LK
Sbjct: 16  SHRPISLKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCAS-HKALPQGQQLHAHFLK 74

Query: 129 LSLH-DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
              + D  F  +  VH Y +  S  +A KVFD++ ER +  + AMI       R V+++ 
Sbjct: 75  TQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIE 134

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           ++ +MR   V    +     L+A            IHG AV  G    V V   LI  Y 
Sbjct: 135 LYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYA 194

Query: 248 KAGIVSDARRVFDENL-SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
           K G +  AR +FD  L    + ++WN++++ +  +G+    L LF  ++  G   + Y+F
Sbjct: 195 KCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTF 254

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT------CLISAMGRAGRLEDAER 360
           ++ L A        E   +I+  +  + +     H+T       LI+     G++EDAER
Sbjct: 255 VSALQAC-------EGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAER 307

Query: 361 IAMAMPFEPDAAVWRALLS 379
           +  +M F+ D   W  LLS
Sbjct: 308 VFKSMLFK-DCVSWNTLLS 325



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 173/380 (45%), Gaps = 21/380 (5%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNH--IPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPT 92
           + N LI  Y+K   L  +  LF+   +   + VSW ++ISAH     SL       R   
Sbjct: 185 VCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQE 244

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           +    N  T  S  + C   +   + G  +H++ LK +     +  +AL+  Y+     +
Sbjct: 245 VGVESNTYTFVSALQACEGPTFIKI-GRGIHAVILKSNHFTDVYVSNALIAMYANCGQME 303

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS----DVGSTMYCVSGAL 208
           +A++VF  +  +D V +  ++ G  QN    D+++ F DM+ S    D  S +  ++ + 
Sbjct: 304 DAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASG 363

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           R+A  LA ME    +H +A+  G+D N+ +G  LID YGK   V      F E +   + 
Sbjct: 364 RSANLLAGME----VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAF-EYMPEKDL 418

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           I+W  ++AGYAQ       L L   +++     D     ++L A   +GL  +SEK I+ 
Sbjct: 419 ISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLAC--SGL--KSEKLIKE 474

Query: 329 MKVRYKLEPGLEHY---TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +   Y L+ GL        +++  G    ++ A  +  ++    D   W ++++    +G
Sbjct: 475 IH-GYVLKGGLADILIQNAIVNVYGELALVDYARHVFESIN-SKDIVSWTSMITCCVHNG 532

Query: 386 KADMASKMGKRLIDINPYDD 405
            A  A ++   LI+ N   D
Sbjct: 533 LAIEALELFNSLIETNIEPD 552



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 186/396 (46%), Gaps = 22/396 (5%)

Query: 19  RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA  LKS+   D  + N LI  Y+    +  + R+F  +   + VSW  L+S    +
Sbjct: 271 RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQN 330

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +   ++N F  M         P+Q ++ ++    +  S   L G+ +H+ ++K  +   
Sbjct: 331 DMYSDAINHFQDMQDSGQ---KPDQVSVLNMIAA-SGRSANLLAGMEVHAYAIKHGIDSN 386

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF--ADM 192
              G++L+  Y +          F+ + E+D++ +  +I G+AQN   +D+L++     +
Sbjct: 387 MHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQL 446

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
              DV   M  +   L A + L + +  + IHG+ +  GL  ++++   +++ YG+  +V
Sbjct: 447 EKMDVDPMM--IGSILLACSGLKSEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALV 503

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VF E+++  + ++W +M+      G     LELF+ L      PD  + ++VL A
Sbjct: 504 DYARHVF-ESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYA 562

Query: 313 LCNAGLAG-ESEKWIERMKVR--YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
              A L+  +  K I    +R  + LE  + +   L+    R G +E+A  I   +  + 
Sbjct: 563 A--AALSSLKKGKEIHGFLIRKGFFLEGLIAN--SLVDMYARCGTMENARNIFNYVK-QR 617

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           D  +W ++++ + +HG    A  +  ++ D N   D
Sbjct: 618 DLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPD 653



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 20/337 (5%)

Query: 9   PQPQNTSTDPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVS 66
           PQ Q        +HA  LK+     S++     +  Y K      ++++F+ +    I +
Sbjct: 63  PQGQQ-------LHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFT 115

Query: 67  WTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLS 126
           W A+I A  ++   +           L    +  T   + K C +     L G  +H ++
Sbjct: 116 WNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRL-GCEIHGVA 174

Query: 127 LKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE--IRERDVVCYGAMIVGFAQNSRLVD 184
           +K       F  +AL+  Y++      A+ +FD   + + D V + ++I         ++
Sbjct: 175 VKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLE 234

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +LS+F  M+   V S  Y    AL+A      ++  R IH   + S    +V V   LI 
Sbjct: 235 ALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIA 294

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y   G + DA RVF   L   + ++WN +++G  Q    S  +  F  ++  G  PD+ 
Sbjct: 295 MYANCGQMEDAERVFKSML-FKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQV 353

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVR-YKLEPGLE 340
           S L ++ A      +G S   +  M+V  Y ++ G++
Sbjct: 354 SVLNMIAA------SGRSANLLAGMEVHAYAIKHGID 384


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/562 (31%), Positives = 307/562 (54%), Gaps = 12/562 (2%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D + +H  A+      D  + N+LI  Y+K     ++  +F  +   N++S+T++I A++
Sbjct: 103 DGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTSMIQAYT 162

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK- 134
           ++   +  +    +  +   +P+    A+    C ++      G ++H   +KL  H++ 
Sbjct: 163 HTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPTIRE----GEAIH---VKLGNHERR 215

Query: 135 -PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
            P C +ALV  Y RF    +AK VFD IR +D+  Y  MI  FA+      ++S++ +M 
Sbjct: 216 TPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEME 275

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             ++   ++  +  L A ++L A+ + + IH          +V   T L++ Y K G   
Sbjct: 276 GRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSTH 335

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +AR VF+ +  + N   W ++M+ Y+Q G     LE +  +   G  PD+ +F A+  A 
Sbjct: 336 EARAVFN-DCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNAC 394

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            ++GL  E   +   M+  + + P   HYTC+I  +GR GRL +AE +   MP+ PD   
Sbjct: 395 SHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVT 454

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W  LLS   ++G   + ++  KR+ ++NP D   Y+++ N+ +  G+W +VAEV+K++K 
Sbjct: 455 WTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQ 514

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R + K  G+S IE + ++H F+ GD  H   ++I  +L E+ E+    GY P   E+L +
Sbjct: 515 RGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVD 574

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V +  K E L +HSE++AL  GL++ +  G TL IVKNLRIC DCH  FK +S+++ R++
Sbjct: 575 VNEEVKPELLLFHSERMALGLGLLT-SDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKV 633

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           +VRD +R+H F  GSC+CGD W
Sbjct: 634 LVRDSHRFHIFQRGSCSCGDYW 655



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 134/313 (42%), Gaps = 22/313 (7%)

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
           L    + F G+ LV  Y R +S D+A   F EI E++   Y  M+  + +N     +L +
Sbjct: 11  LEQEKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQL 70

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAA--MEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
           F    + ++          L++ A L    +E  + IH HA+  G   +++V   LI  Y
Sbjct: 71  FKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMY 130

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            K G    A  VF E +   N I++ +M+  Y          EL+  +   G  PD Y++
Sbjct: 131 AKCGSFKFAAGVF-EKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAY 189

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
            A L A+C     GE+     ++    +  P   +   L+   GR GR+  A+ +   + 
Sbjct: 190 AAAL-AVCPTIREGEAIHV--KLGNHERRTPVCSN--ALVGMYGRFGRIASAKWVFDGIR 244

Query: 367 FEPDAAVWRALLSFSAIHGKADMASK-------MGKRLIDINPYDDSAYVIVANVLSGVG 419
           ++ D A +  ++   A+  K D  SK       M  R ++ N +    +  V +  S +G
Sbjct: 245 YK-DLASYNNMI---AVFAKYDDGSKAISLYIEMEGRNLEPNLW---TFTSVLDACSKLG 297

Query: 420 RWDEVAEVRKVMK 432
              E  E+ K +K
Sbjct: 298 ALTEGKEIHKKVK 310


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 300/563 (53%), Gaps = 34/563 (6%)

Query: 44  SKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLA 103
           S ++L+ Y+ R+F+ I +PN+  + A+I  HS S      F   ++      LP+  T  
Sbjct: 64  SGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFP 123

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD----------- 152
            L K+C  L H    G   H   +K       +  ++LVH Y+ F   +           
Sbjct: 124 FLVKSCTKL-HCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYY 182

Query: 153 --------------------NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                               +A+K+FD++ E+++V +  MI G+AQN+    ++ +F  +
Sbjct: 183 VDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVL 242

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           +S  V +    +   + + A L A+E     H + V +G+  N+I+GT L+D Y + G +
Sbjct: 243 QSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSI 302

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A  VF E+L   ++++W A++AG A  G     L+ F  +   G  P + +F AVL+A
Sbjct: 303 DKAVWVF-EDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSA 361

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL     +  E MK  +++EP LEHY C++  +GRAG+LE+AER  + MP +P+A 
Sbjct: 362 CSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAP 421

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALL    IH  A++  ++GK LI + P     YV+++N+ +    W++V E+R++MK
Sbjct: 422 VWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMK 481

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            + ++K  G S IE+ G+VH F  GD  H   + I     E++      GY     + L 
Sbjct: 482 AKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALF 541

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + EK  AL  HSEKLA+AFG++  +  G  +RIVKNLR+C DCH + K IS+V  RE
Sbjct: 542 DIDEEEKESALHRHSEKLAIAFGMMR-SEAGTPIRIVKNLRVCEDCHTATKLISKVFGRE 600

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           ++VRD NR+H F  G C+C D W
Sbjct: 601 LIVRDRNRFHHFRQGLCSCMDYW 623



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 113/251 (45%), Gaps = 18/251 (7%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPT 92
           + ++I  ++K   +  + +LF+ +P  N+V+W+ +IS ++ +     ++ +F  +    +
Sbjct: 188 WTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVL---QS 244

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
                N+  + S+  +CA L  A   G   H   +K  +      G+ALV  Y+R  S D
Sbjct: 245 QGVRANETVMVSVISSCAHLG-ALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSID 303

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
            A  VF+++ ERD + + A+I G A +     SL  FA M  + +       +  L A +
Sbjct: 304 KAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACS 363

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGL------IDGYGKAGIVSDARRVFDENLSVL 266
               +E+     G  +   + R+  V   L      +D  G+AG + +A R   +     
Sbjct: 364 HGGLVER-----GFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKP 418

Query: 267 NSIAWNAMMAG 277
           N+  W A++  
Sbjct: 419 NAPVWGALLGA 429


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 192/563 (34%), Positives = 312/563 (55%), Gaps = 13/563 (2%)

Query: 19  RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP--NIVSWTALISAHS 75
           R VHA+  +    AD  + N LI  Y+K   L  +  +F  +P P   IVSWTA++SA++
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 76  NS--PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            +  P+ +L IF  M +   +   P+   L S+      L      G S+H+  +K+ L 
Sbjct: 199 QNGEPMEALEIFSHMRK---MDVKPDWVALVSVLNAFTCLQD-LKQGRSIHASVVKMGLE 254

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            +P    +L   Y++      AK +FD+++  +++ + AMI G+A+N    +++ +F +M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            + DV      ++ A+ A A++ ++EQ R ++ +   S    +V + + LID + K G V
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD  L   + + W+AM+ GY   G     + L+  +E  G  P++ +FL +L A
Sbjct: 375 EGARLVFDRTLD-RDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMA 433

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++G+  E   W   +   +K+ P  +HY C+I  +GRAG L+ A  +   MP +P   
Sbjct: 434 CNHSGMVREGW-WFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVT 492

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALLS    H   ++     ++L  I+P +   YV ++N+ +    WD VAEVR  MK
Sbjct: 493 VWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMK 552

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           ++ + K+ G SW+EV+G++  F  GD+ H R E+I  ++  +    +  G+V   D  LH
Sbjct: 553 EKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLH 612

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ D E  E L  HSE++A+A+GL+S  P+G  LRI KNLR C +CH + K IS++V+RE
Sbjct: 613 DLNDEEAEETLCSHSERIAIAYGLIS-TPQGTPLRITKNLRACVNCHAATKLISKLVDRE 671

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H F +G C+CGD W
Sbjct: 672 IVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 169/370 (45%), Gaps = 7/370 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HAR L    Q    +   LI   S    ++++ ++F+ +P P I  W A+I  +S +  
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
             +  L           P+  T   L K C+ LSH    G  +H+   +L      F  +
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH-LQMGRFVHAQVFRLGFDADVFVQN 158

Query: 140 ALVHFYSRFRSPDNAKKVFD--EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            L+  Y++ R   +A+ VF+   + ER +V + A++  +AQN   +++L +F+ MR  DV
Sbjct: 159 GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDV 218

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 +   L A   L  ++Q R IH   V  GL+    +   L   Y K G V+ A+ 
Sbjct: 219 KPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKI 278

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD+ +   N I WNAM++GYA+ G     +++FH +  +   PD  S  + ++A    G
Sbjct: 279 LFDK-MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              ++    E +  R      +   + LI    + G +E A R+      + D  VW A+
Sbjct: 338 SLEQARSMYEYVG-RSDYRDDVFISSALIDMFAKCGSVEGA-RLVFDRTLDRDVVVWSAM 395

Query: 378 LSFSAIHGKA 387
           +    +HG+A
Sbjct: 396 IVGYGLHGRA 405



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 7/285 (2%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H+  L L L    F  + L+H  S F     A++VFD++    +  + A+I G+++N+ 
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
             D+L ++++M+ + V    +     L+A + L+ ++  R +H      G D +V V  G
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNG 159

Query: 242 LIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
           LI  Y K   +  AR VF+   L     ++W A+++ YAQ G+    LE+F  +      
Sbjct: 160 LIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVK 219

Query: 301 PDEYSFLAVLTAL-CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
           PD  + ++VL A  C   L          +K+  ++EP L     L +   + G++  A+
Sbjct: 220 PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATAK 277

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINP 402
            +   M   P+  +W A++S  A +G A  A  M   +I  D+ P
Sbjct: 278 ILFDKMK-SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 6/201 (2%)

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           Q + IH   +V GL  +  + T LI      G ++ AR+VFD+ L       WNA++ GY
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD-LPRPQIFPWNAIIRGY 94

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           ++       L ++  +++   +PD ++F  +L A C+     +  +++     R   +  
Sbjct: 95  SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKA-CSGLSHLQMGRFVHAQVFRLGFDAD 153

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV-WRALLSFSAIHGKADMASKMGK-- 395
           +     LI+   +  RL  A  +   +P      V W A++S  A +G+   A ++    
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHM 213

Query: 396 RLIDINPYDDSAYVIVANVLS 416
           R +D+ P D  A V V N  +
Sbjct: 214 RKMDVKP-DWVALVSVLNAFT 233


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 182/514 (35%), Positives = 293/514 (57%), Gaps = 13/514 (2%)

Query: 70  LISAHSNSPL-SLNI-----FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           LI AH+ SP+ SL +     F  MLR    + +PN+ T   L K CA+L  +   GL  H
Sbjct: 94  LIRAHATSPIHSLRLRAAAFFPLMLRG---AVVPNKFTFPFLLKACAALPGSPDVGLQAH 150

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSP--DNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           + +LK       +  + L+H YS F      +A+ VFD + +   V + AMI G+ +   
Sbjct: 151 AAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGL 210

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
             D++ +F +M+++ V +    V G L AA +L A+E  R +       G+ ++V +   
Sbjct: 211 SSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNA 270

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           LID   K G V  A  VF E +   + ++W +++   A +G     + +F  +++ G  P
Sbjct: 271 LIDTLAKCGDVDGAVAVF-EGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPP 329

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           D+ +F+ VLTA  +AG+  E   + + MKV Y +EP +EHY C++   GRAG +E A   
Sbjct: 330 DDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEF 389

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
              MP +P+  +WR+L+S    HG+ ++   + + L+   P  ++ Y++++NV +   RW
Sbjct: 390 VRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRW 449

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
            E +E+R+ M  R ++K  G S +E+ G+VH F+AGD  H + +DIY  + E+  E  R+
Sbjct: 450 KEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRV 509

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           G++    E+L ++ + +K  AL +HSEKLA+AF L+   P G  +R+VKNLR+C DCH +
Sbjct: 510 GHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLR-TPPGTQVRVVKNLRVCSDCHAA 568

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            K IS+V  REIVVRD +R+HRF +GSC+C D W
Sbjct: 569 IKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 195/553 (35%), Positives = 296/553 (53%), Gaps = 11/553 (1%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
           K   +D  +   LI+ YSK         LF+ I  P+++S+ A+IS ++    +  ++ +
Sbjct: 243 KGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTL 302

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  +L         N  TL  L       +H  L  L + +LSLK+ +  +P   +AL  
Sbjct: 303 FRELLASGQRV---NSSTLVGLIPVYLPFNHLQLSRL-IQNLSLKIGIILQPSVSTALTT 358

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y R      A+++FDE  E+ +  + AMI G+ QN     ++S+F +M    +      
Sbjct: 359 VYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVT 417

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           V+  L A A+L A+   + +HG      L+ NV V T L+D Y K G + +AR++FD  +
Sbjct: 418 VTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMV 477

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              N + WNAM+ GY   G     L+LF+ +   G  P   +FL++L A  ++GL  E  
Sbjct: 478 DK-NVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGN 536

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           +    M   Y  +P  EHY C++  +GRAG+L +A      MP EP  AVW ALL    I
Sbjct: 537 EIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMI 596

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           H   +MA+   KRL  ++P +   YV+++N+ S    + + A VR+V+K R++ K  G +
Sbjct: 597 HKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCT 656

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY-VPVWDEMLHNVGDREKREA 502
            IE+  + +VF +GDR H +   I+  L +L  +    GY        LH+V D EK   
Sbjct: 657 LIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELM 716

Query: 503 LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562
           +  HSEKLA+AFGL+S  P G  +RI+KNLR+C DCH + K+IS++ ER IVVRD NR+H
Sbjct: 717 VNVHSEKLAIAFGLISTKP-GTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFH 775

Query: 563 RFLNGSCTCGDLW 575
            F NG C+CGD W
Sbjct: 776 HFKNGICSCGDYW 788



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 176/395 (44%), Gaps = 25/395 (6%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112
           +LFN +  P++  +  LI   S++ L   +IFL        +  P+  T A      + L
Sbjct: 67  QLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRL 126

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
               + G+ LH+ S+   +    F GSA+V  Y +F   + A+KVFD + ERD V +  M
Sbjct: 127 EDERV-GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTM 185

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           I GF++NS   DS+ VF DM    +      ++  L A AEL        I   A   GL
Sbjct: 186 ISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGL 245

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
             +V V TGLI  Y K G     R +FD+ +   + I++NAM++GY    +  + + LF 
Sbjct: 246 HSDVYVLTGLISLYSKCGKSCKGRILFDQ-IDQPDLISYNAMISGYTFNHETESAVTLFR 304

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER--MKVRYKLEPGLEHYTCLISAMG 350
            L   G   +  + + ++           S + I+   +K+   L+P +   T L +   
Sbjct: 305 ELLASGQRVNSSTLVGLIPVYLPFNHLQLS-RLIQNLSLKIGIILQPSVS--TALTTVYC 361

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           R   ++ A ++    P E   A W A++S    +G  D A  + + ++   P      V 
Sbjct: 362 RLNEVQFARQLFDESP-EKSLASWNAMISGYTQNGLTDRAISLFQEMM---PQLSPNPVT 417

Query: 411 VANVLSG--------VGRWDEVAEVRKVMKDRRVR 437
           V ++LS         +G+W     V  ++K  R+ 
Sbjct: 418 VTSILSACAQLGALSIGKW-----VHGLIKSERLE 447


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 181/540 (33%), Positives = 302/540 (55%), Gaps = 8/540 (1%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSF 95
           L+  Y+K   L Y+ R+F  +   N V+W+AL+           + ++F  ML    L F
Sbjct: 274 LLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQ-GLCF 332

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           L +  ++AS  + CA+LS   L G  LH+L  K  LH     G++L+  Y++    D A 
Sbjct: 333 L-SPTSVASALRACANLSDLCL-GKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQAT 390

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            +FD++  +D V Y A++ G+ QN +  ++  VF  M++ +V   +  +   + A + LA
Sbjct: 391 TLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLA 450

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A++  +  HG  +V G+     +   LID Y K G +  +R++FD  +   + ++WN M+
Sbjct: 451 ALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDV-MPARDIVSWNTMI 509

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           AGY   G       LF  ++ +   PD+ +F+ +++A  ++GL  E ++W   M  +Y +
Sbjct: 510 AGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGI 569

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
            P +EHY  ++  + R G L++A +    MP + D  VW ALL    +H   D+  ++  
Sbjct: 570 TPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSS 629

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
            +  + P     +V+++N+ S  GR+DE AEVR + K++  +K  G SWIE+ G +H F+
Sbjct: 630 MIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFI 689

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
            GDR H ++ +IY +L  ++ +  +LGY      +L +V + EK +AL YHSEKLA+AFG
Sbjct: 690 GGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFG 749

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +++     KT+ + KNLR+C DCH   KY++ V +R I+VRD NR+H F NG C+CGD W
Sbjct: 750 VLT-LSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 168/370 (45%), Gaps = 16/370 (4%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKT 108
           LS +  LF+ IP+P I  + ALI A+S    +L + L           PN  T   + K 
Sbjct: 79  LSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKA 138

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
           C++L        ++H  + +  LH   F  +ALV  Y++  S  +A  VF  +  RDVV 
Sbjct: 139 CSALLD-LRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVA 197

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           + AM+ G+A + +  D+++    M+  D       +   L   A+  A+ Q R +H ++V
Sbjct: 198 WNAMLAGYALHGKYSDTIACLLLMQ-DDHAPNASTLVALLPLLAQHGALSQGRAVHAYSV 256

Query: 229 ----VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
               +      V+VGT L+D Y K G +  A RVF E ++V N + W+A++ G+   G  
Sbjct: 257 RACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVF-EAMAVRNEVTWSALVGGFVLCGRM 315

Query: 285 STVLELFHLLEMRG---FAPDEY-SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
                LF  +  +G    +P    S L     L +  L  +    + +  +   L  G  
Sbjct: 316 LEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAG-- 373

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
               L+S   +AG ++ A  +   M  + D   + AL+S    +GKAD A ++ +++   
Sbjct: 374 --NSLLSMYAKAGLIDQATTLFDQMVVK-DTVSYSALVSGYVQNGKADEAFRVFRKMQAC 430

Query: 401 NPYDDSAYVI 410
           N   D A ++
Sbjct: 431 NVQPDVATMV 440



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 121/264 (45%), Gaps = 13/264 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   KS    D +  N+L++ Y+K+ L+  +  LF+ +   + VS++AL+S +  +  
Sbjct: 357 LHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGK 416

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +   F    +    +  P+  T+ SL   C+ L+ A   G   H   +   +  +    +
Sbjct: 417 ADEAFRVFRKMQACNVQPDVATMVSLIPACSHLA-ALQHGKCGHGSVIVRGIASETSICN 475

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-----S 194
           AL+  Y++    D ++++FD +  RD+V +  MI G+  +    ++ ++F DM+      
Sbjct: 476 ALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEP 535

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            DV  T  C+  A   +  +   E  R  H  A   G+   +    G++D   + G + +
Sbjct: 536 DDV--TFICLISACSHSGLVT--EGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDE 591

Query: 255 ARRVFDENLSVLNSI-AWNAMMAG 277
           A + F + + +   +  W A++  
Sbjct: 592 AYQ-FIQGMPLKADVRVWGALLGA 614


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 195/553 (35%), Positives = 296/553 (53%), Gaps = 11/553 (1%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
           K   +D  +   LI+ YSK         LF+ I  P+++S+ A+IS ++    +  ++ +
Sbjct: 243 KGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTL 302

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  +L         N  TL  L       +H  L  L + +LSLK+ +  +P   +AL  
Sbjct: 303 FRELLASGQRV---NSSTLVGLIPVYLPFNHLQLSRL-IQNLSLKIGIILQPSVSTALTT 358

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y R      A+++FDE  E+ +  + AMI G+ QN     ++S+F +M    +      
Sbjct: 359 VYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVT 417

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           V+  L A A+L A+   + +HG      L+ NV V T L+D Y K G + +AR++FD  +
Sbjct: 418 VTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMV 477

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              N + WNAM+ GY   G     L+LF+ +   G  P   +FL++L A  ++GL  E  
Sbjct: 478 DK-NVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGN 536

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           +    M   Y  +P  EHY C++  +GRAG+L +A      MP EP  AVW ALL    I
Sbjct: 537 EIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMI 596

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           H   +MA+   KRL  ++P +   YV+++N+ S    + + A VR+V+K R++ K  G +
Sbjct: 597 HKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCT 656

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY-VPVWDEMLHNVGDREKREA 502
            IE+  + +VF +GDR H +   I+  L +L  +    GY        LH+V D EK   
Sbjct: 657 LIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELM 716

Query: 503 LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562
           +  HSEKLA+AFGL+S  P G  +RI+KNLR+C DCH + K+IS++ ER IVVRD NR+H
Sbjct: 717 VNVHSEKLAIAFGLISTKP-GTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFH 775

Query: 563 RFLNGSCTCGDLW 575
            F NG C+CGD W
Sbjct: 776 HFKNGICSCGDYW 788



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 174/380 (45%), Gaps = 22/380 (5%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPL-SLNIFL-SMLRHPTLSFLPNQRTLASLFKTCAS 111
           +LFN +  P++  +  LI   S++ L   +IFL + LR  T +  P+  T A      + 
Sbjct: 67  QLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKT-NLRPDNFTYAFAISAASR 125

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
           L    + G+ LH+ S+   +    F GSA+V  Y +F   + A+KVFD + ERD V +  
Sbjct: 126 LEDERV-GVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNT 184

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           MI GF++NS   DS+ VF DM    +      ++  L A AEL        I   A   G
Sbjct: 185 MISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKG 244

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           L  +V V TGLI  Y K G     R +FD+ +   + I++NAM++GY    +  + + LF
Sbjct: 245 LHSDVYVLTGLISLYSKCGKSCKGRILFDQ-IDQPDLISYNAMISGYTFNHETESAVTLF 303

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER--MKVRYKLEPGLEHYTCLISAM 349
             L   G   +  + + ++           S + I+   +K+   L+P +   T L +  
Sbjct: 304 RELLASGQRVNSSTLVGLIPVYLPFNHLQLS-RLIQNLSLKIGIILQPSVS--TALTTVY 360

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409
            R   ++ A ++    P E   A W A++S    +G  D A  + + ++   P      V
Sbjct: 361 CRLNEVQFARQLFDESP-EKSLASWNAMISGYTQNGLTDRAISLFQEMM---PQLSPNPV 416

Query: 410 IVANVLSG--------VGRW 421
            V ++LS         +G+W
Sbjct: 417 TVTSILSACAQLGALSIGKW 436


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 181/568 (31%), Positives = 306/568 (53%), Gaps = 31/568 (5%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +IV AR    S   R +  +N +IT Y++S  +  + +LF+  P  ++ +WTA++S +  
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQ 293

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG-LSLHSLSLKLSLH 132
           + +   +  +F  M     +S+                  +A L G +    + +   L 
Sbjct: 294 NRMVEEARELFDKMPERNEVSW------------------NAMLAGYVQGERMEMAKELF 335

Query: 133 DKPFC-----GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
           D   C      + ++  Y++      AK +FD++ +RD V + AMI G++Q+    ++L 
Sbjct: 336 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 395

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           +F  M            S AL   A++ A+E  + +HG  V  G +    VG  L+  Y 
Sbjct: 396 LFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 455

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G + +A  +F E ++  + ++WN M+AGY++ G     L  F  ++  G  PD+ + +
Sbjct: 456 KCGSIEEANDLFKE-MAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMV 514

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           AVL+A  + GL  +  ++   M   Y + P  +HY C++  +GRAG LEDA  +   MPF
Sbjct: 515 AVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPF 574

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           EPDAA+W  LL  S +HG  ++A     ++  + P +   YV+++N+ +  GRW +V ++
Sbjct: 575 EPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKL 634

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           R  M+D+ V+K  G SWIE++ K H F  GD  H   ++I+  L EL    ++ GYV   
Sbjct: 635 RVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKT 694

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
             +LH+V + EK   + YHSE+LA+A+G++     G+ +R++KNLR+C DCH + KY++R
Sbjct: 695 SVVLHDVEEEEKERMVRYHSERLAVAYGIMR-VSSGRPIRVIKNLRVCEDCHNAIKYMAR 753

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +  R I++RD NR+H F +GSC+CGD W
Sbjct: 754 ITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 148/327 (45%), Gaps = 42/327 (12%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           + ++  Y R    + A+K+FDE+ ERD+V +  MI G+ +N  L  +  +F  M   DV 
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158

Query: 199 STMYCVSGALR------AAAELAAMEQCRVIHGHAVVSGLDRN----------------- 235
           S    +SG  +      A +    M +   +  +A++S   +N                 
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           ++    L+ G+ K   + +AR+ FD +++V + ++WN ++ GYAQ G      +LF    
Sbjct: 219 LVSWNCLLGGFVKKKKIVEARQFFD-SMNVRDVVSWNTIITGYAQSGKIDEARQLFDESP 277

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
           ++    D +++ A+++      +  E+ +  ++M  R ++      +  +++   +  R+
Sbjct: 278 VQ----DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS-----WNAMLAGYVQGERM 328

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
           E A+ +   MP   + + W  +++  A  GK   A    K L D  P  D   V  A ++
Sbjct: 329 EMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEA----KNLFDKMPKRDP--VSWAAMI 381

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGR 442
           +G  +     E  ++    ++ +EGGR
Sbjct: 382 AGYSQSGHSFEALRLFV--QMEREGGR 406



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 19/235 (8%)

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           Y R    + A +VF  +     V Y  MI G+ +N     +  +F +M   D+ S    +
Sbjct: 74  YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMI 133

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
            G +R      A E   ++         +R+V     ++ GY + G V DAR VFD  + 
Sbjct: 134 KGYVRNRNLGKARELFEIMP--------ERDVCSWNTMLSGYAQNGCVDDARSVFDR-MP 184

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             N ++WNA+++ Y Q         LF   E         S+  +L          E+ +
Sbjct: 185 EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV----SWNCLLGGFVKKKKIVEARQ 240

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           + + M VR      +  +  +I+   ++G++++A ++    P + D   W A++S
Sbjct: 241 FFDSMNVR-----DVVSWNTIITGYAQSGKIDEARQLFDESPVQ-DVFTWTAMVS 289


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 177/558 (31%), Positives = 307/558 (55%), Gaps = 7/558 (1%)

Query: 17   DPRIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
            + +IVHA  + +   D  I  N L+T Y K  ++  + ++   +P P+ V+W ALI  H+
Sbjct: 517  ESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHA 576

Query: 76   NS--PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
             +  P        ++R   +    N  T+ S+   C++       G+ +H+  +      
Sbjct: 577  ENEEPNEAVKAYKLIREKGIP--ANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFES 634

Query: 134  KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
              +  ++L+  Y++    +++  +FD +  +  + + AM+   A +    ++L +F +MR
Sbjct: 635  DDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMR 694

Query: 194  SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
            +  V    +  SG L A A LA +E+ + +HG  +  G + ++ V    +D YGK G + 
Sbjct: 695  NVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMH 754

Query: 254  DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            D  ++  + ++  + ++WN +++ +A+ G      E FH +   G  PD  +F+++L+A 
Sbjct: 755  DVLKMLPQPIN-RSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSAC 813

Query: 314  CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
             + GL  E   + + M   + + PG+EH  C+I  +GR+GRL  AE     MP  P+   
Sbjct: 814  NHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLA 873

Query: 374  WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
            WR+LL+   IHG  ++A K  + L++++P DDSAYV+ +NV +  G+W++V  +RK M  
Sbjct: 874  WRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGS 933

Query: 434  RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
              ++K+   SW+++K KVH F  G++ H +   I  KL ELM+  +  GYVP     LH+
Sbjct: 934  NNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHD 993

Query: 494  VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
            + + +K   LW HSE+LALAFGL++  P   TLRI KNLR+C DCH  +K++S +V R+I
Sbjct: 994  MDEEQKEYNLWNHSERLALAFGLIN-TPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKI 1052

Query: 554  VVRDVNRYHRFLNGSCTC 571
            V+RD  R+H F  G C+C
Sbjct: 1053 VLRDPYRFHHFSGGKCSC 1070



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 176/379 (46%), Gaps = 11/379 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   +K+    D  +   L+  Y    L+  + +LF  +P  N+VSWT+L+  +S+S  
Sbjct: 218 VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 277

Query: 80  S---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               LN++  M R   +S   NQ T A++  +C  L    L G  +    ++    D   
Sbjct: 278 PGEVLNVYQRM-RQEGVS--GNQNTFATVTSSCGLLEDQVL-GYQVLGHIIQYGFEDSVS 333

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  +S F S + A  VFD + E D++ + AMI  +A +    +SL  F  MR   
Sbjct: 334 VANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLH 393

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
             +    +S  L   + +  ++  R IHG  V  GLD NV +   L+  Y +AG   DA 
Sbjct: 394 NETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAE 453

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF + ++  + I+WN+MMA Y Q G     L++   L   G   +  +F + L A  N 
Sbjct: 454 LVF-QAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNP 512

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               ES K +  + +       L     L++  G+ G + +A+++   MP +PD   W A
Sbjct: 513 ECLIES-KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNA 570

Query: 377 LLSFSAIHGKADMASKMGK 395
           L+   A + + + A K  K
Sbjct: 571 LIGGHAENEEPNEAVKAYK 589



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 207/473 (43%), Gaps = 34/473 (7%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           N LI  YSK   + ++  +F+ +   N  SW+ ++S +    L   ++ +F  M     L
Sbjct: 133 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMW---GL 189

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
              PN   +ASL   C+   +    G  +H   +K  +    + G+ALVHFY       N
Sbjct: 190 GVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYN 249

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+K+F+E+ + +VV + +++VG++ +    + L+V+  MR   V       +    +   
Sbjct: 250 AQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGL 309

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           L        + GH +  G + +V V   LI  +     V +A  VFD +++  + I+WNA
Sbjct: 310 LEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFD-HMNECDIISWNA 368

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW---IERMK 330
           M++ YA  G     L  FH   MR    +  S    L++L +   + ++ KW   I  + 
Sbjct: 369 MISAYAHHGLCRESLRCFHW--MRHLHNETNS--TTLSSLLSVCSSVDNLKWGRGIHGLV 424

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           V+  L+  +     L++    AGR EDAE +  AM  E D   W ++++     GK    
Sbjct: 425 VKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT-ERDLISWNSMMACYVQDGKCLDG 483

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
            K+   L+ +    +  +V  A+ L+     + + E + V            + I V G 
Sbjct: 484 LKILAELLQMGKVMN--HVTFASALAACSNPECLIESKIV-----------HALIIVAGF 530

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN--VGDREKRE 501
               + G+ +      +Y KL  +ME  + L  +P  D +  N  +G   + E
Sbjct: 531 HDFLIVGNAL----VTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENE 579



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 176/367 (47%), Gaps = 17/367 (4%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
           S+ N+LI+ +S  + +  +  +F+H+   +I+SW A+ISA+++  L   SL  F  M RH
Sbjct: 333 SVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM-RH 391

Query: 91  PTLSFLPNQR--TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                L N+   T  S   +  S      +G  +H L +KL L       + L+  YS  
Sbjct: 392 -----LHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEA 446

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS--G 206
              ++A+ VF  + ERD++ + +M+  + Q+ + +D L + A++    +G  M  V+   
Sbjct: 447 GRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELL--QMGKVMNHVTFAS 504

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           AL A +    + + +++H   +V+G    +IVG  L+  YGK G++ +A++V  + +   
Sbjct: 505 ALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVL-QTMPQP 563

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + + WNA++ G+A+  + +  ++ + L+  +G   +  + ++VL A        +    I
Sbjct: 564 DRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPI 623

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
               V    E        LI+   + G L  +  I   +        W A+++ +A HG 
Sbjct: 624 HAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLG-NKSPITWNAMVAANAHHGC 682

Query: 387 ADMASKM 393
            + A K+
Sbjct: 683 GEEALKI 689



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 138/270 (51%), Gaps = 8/270 (2%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G +LH+  +  S++   F  + L++ YS+F + ++A+ VFDE+R R+   +  M+ G+ +
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVI 237
                +++ +F  M    V    + V+  + A +    M ++   +HG  V +G+  +V 
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           VGT L+  YG  G+V +A+++F+E +   N ++W ++M GY+  G+   VL ++  +   
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEE-MPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQE 291

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMK--VRYKLEPGLEHYTCLISAMGRAGRL 355
           G + ++ +F A +T+ C  GL  +     + +   ++Y  E  +     LIS       +
Sbjct: 292 GVSGNQNTF-ATVTSSC--GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSV 348

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           E+A  +   M  E D   W A++S  A HG
Sbjct: 349 EEACYVFDHMN-ECDIISWNAMISAYAHHG 377



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 3/196 (1%)

Query: 184 DSLSVFADMRSSDVG-STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
           D   VF   + +D G   +  V+  L+  +E+ +    + +H   +V  ++  +     L
Sbjct: 76  DIAKVFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTL 135

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           I+ Y K G +  AR VFDE +   N  +W+ M++GY + G     + LF  +   G  P+
Sbjct: 136 INMYSKFGNIEHARYVFDE-MRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPN 194

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
            +   +++TA   +G   +    +    V+  +   +   T L+   G  G + +A+++ 
Sbjct: 195 GFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLF 254

Query: 363 MAMPFEPDAAVWRALL 378
             MP + +   W +L+
Sbjct: 255 EEMP-DHNVVSWTSLM 269


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 316/563 (56%), Gaps = 15/563 (2%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN- 76
           R +H  A+K+S       NN L+  YSKS  L+ ++++F  +   ++VSWT++I+ ++  
Sbjct: 271 RALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYARE 330

Query: 77  --SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             S +S+ +F  M +       P+  T+ ++   CA  +     G  +H+   +  +   
Sbjct: 331 GLSDMSVRLFHEMEKE---GISPDIFTITTILHACAC-TGLLENGKDVHNYIKENKMQSD 386

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR- 193
            F  +AL+  Y++  S  +A  VF E++ +D+V +  MI G+++NS   ++L++F +M+ 
Sbjct: 387 LFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQY 446

Query: 194 -SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            S     TM C+   L A A LAA+E+ + IHGH + +G   +  V   L+D Y K G +
Sbjct: 447 NSKPNSITMACI---LPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGAL 503

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR +FD  +   + ++W  M+AGY   G  S  +  F+ +   G  PDE SF+++L A
Sbjct: 504 GLARLLFDM-IPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYA 562

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++GL  E   +   M+    +EP  EHY C++  + RAG L  A +    MP EPDA 
Sbjct: 563 CSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 622

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W ALL    I+    +A K+ + + ++ P +   YV++AN+ +   +W+EV ++R+ + 
Sbjct: 623 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIG 682

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            R +RK  G SWIE+KGKVH+F+ GD  H     I   L +     +  G+ P     L 
Sbjct: 683 RRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALI 742

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
              D EK  AL  HSEK+A+AFG++S  P GKT+R+ KNLR+C DCHE  K++S++V+R+
Sbjct: 743 KADDTEKEMALCGHSEKIAMAFGILS-LPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRD 801

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I++RD NR+H F +GSC+C   W
Sbjct: 802 IILRDSNRFHHFKDGSCSCRGHW 824



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 178/376 (47%), Gaps = 16/376 (4%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           +LF+ +   +++SW ++IS + ++ LS   L++F  ML    L    +  T+ S+   C+
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQML---LLGINTDLATMVSVVAGCS 262

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
           + +   L G +LH  ++K S   +    + L+  YS+  + ++A +VF+ + ER VV + 
Sbjct: 263 N-TGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWT 321

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           +MI G+A+      S+ +F +M    +   ++ ++  L A A    +E  + +H +   +
Sbjct: 322 SMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKEN 381

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
            +  ++ V   L+D Y K G + DA  VF E + V + ++WN M+ GY++    +  L L
Sbjct: 382 KMQSDLFVSNALMDMYAKCGSMGDAHSVFSE-MQVKDIVSWNTMIGGYSKNSLPNEALNL 440

Query: 291 FHLLEMR-GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
           F  +EM+    P+  +   +L A C +  A E  + I    +R            L+   
Sbjct: 441 F--VEMQYNSKPNSITMACILPA-CASLAALERGQEIHGHILRNGFSLDRHVANALVDMY 497

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD--MASKMGKRLIDINPYDDSA 407
            + G L  A R+   M  E D   W  +++   +HG     +A+    R   I P D+ +
Sbjct: 498 LKCGALGLA-RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEP-DEVS 555

Query: 408 YVIVANVLSGVGRWDE 423
           ++ +    S  G  DE
Sbjct: 556 FISILYACSHSGLLDE 571



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 113/231 (48%), Gaps = 3/231 (1%)

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
            R  ++A+K+FDE+ +RDV+ + +MI G+  N      L +F  M    + + +  +   
Sbjct: 198 IRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV 257

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           +   +    +   R +HG+A+ +   + + +   L+D Y K+G ++ A +VF E +   +
Sbjct: 258 VAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVF-ETMGERS 316

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W +M+AGYA++G     + LFH +E  G +PD ++   +L A    GL  E+ K + 
Sbjct: 317 VVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLL-ENGKDVH 375

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
                 K++  L     L+    + G + DA  +   M  + D   W  ++
Sbjct: 376 NYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMI 425



 Score = 45.1 bits (105), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           Y   I  F +   L  ++ +       D+    YC    L+  A+L +++  R IH    
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELRTYC--SVLQLCADLKSIQDGRRIHSIIQ 128

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
            + ++ + ++G+ L+  Y   G + + RR+FD+ ++      WN +M GYA+ G+    L
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDK-VANEKVFLWNLLMNGYAKIGNFRESL 187

Query: 289 ELF 291
            LF
Sbjct: 188 SLF 190


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 180/514 (35%), Positives = 291/514 (56%), Gaps = 13/514 (2%)

Query: 70  LISAHSNSPL------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           LI AH+ SP+      +   F  MLR    + +PN+ T   L K CA+L  +   GL  H
Sbjct: 94  LIRAHATSPIHSLRLRAAAFFPLMLRG---AVVPNKFTFPFLLKACAALPGSPDVGLQAH 150

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSP--DNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           + +LK       +  + L+H YS F      +A+ VFD + +   V + AMI G+ +   
Sbjct: 151 AAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGL 210

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
             D++ +F +M+++ V +    V G L AA +L A+E  R +       G+ ++V +   
Sbjct: 211 SSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNA 270

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           LID   K G V  A  VF E +   + ++W +++   A +G     + +F  +++ G  P
Sbjct: 271 LIDTLAKCGDVDGAVAVF-EGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPP 329

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           D+ +F+ VLTA  +AG+  E   + + MKV Y +EP +EHY C++   GRAG +E A   
Sbjct: 330 DDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEF 389

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
              MP +P+  +WR+L+S    HG+ ++   + + L+   P  ++ Y++++NV +   RW
Sbjct: 390 VRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRW 449

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
            E +E+R+ M  R ++K  G S +E+ G+VH F+AGD  H + +DIY  + E+  E  R+
Sbjct: 450 KEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRV 509

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           G++    E+L ++ + +K  AL +HSEKLA+AF L+   P G  +R+VKNLR+C DCH +
Sbjct: 510 GHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLR-TPPGTQVRVVKNLRVCSDCHAA 568

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            K IS+V  REIVVRD +R+HRF +GSC+C D W
Sbjct: 569 IKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 202/560 (36%), Positives = 308/560 (55%), Gaps = 30/560 (5%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSP---NIVSWTALISA---HSNSPLSLNIFLSM 87
           S+ N ++  YS+   L+ + R+F  +      + VSW A+I A   H     ++ +F  M
Sbjct: 175 SVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREM 234

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           +R        +  T+AS+  T  +     + G+  H + +K   H     GS L+  YS+
Sbjct: 235 VRR---GLKVDMFTMASVL-TAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSK 290

Query: 148 FRSP-DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV-DSLSVFADMRSSDV---GSTMY 202
                   +KVF+EI   D+V +  MI GF+Q   L  D +  F +M+ +       +  
Sbjct: 291 CAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFV 350

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN-VIVGTGLIDGYGKAGIVSDARRVFDE 261
           CV+ A    + L++    + +H  A+ S +  N V V   L+  Y K G V DARRVFD 
Sbjct: 351 CVTSA---CSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFD- 406

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            +   N ++ N+M+AGYAQ G +   L LF L+  +  AP+  +F+AVL+A  + G   E
Sbjct: 407 TMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEE 466

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
            +K+   MK R+++EP  EHY+C+I  +GRAG+L++AERI   MPF P +  W  LL   
Sbjct: 467 GQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGAC 526

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
             HG  ++A K     + + PY+ + YV+++N+ +   RW+E A V+++M++R V+K+ G
Sbjct: 527 RKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPG 586

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP------VWDEMLHNVG 495
            SWIE+  KVHVF+A D  H   ++I+  + E++ + ++ GYVP      V DE    V 
Sbjct: 587 CSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDE---EVE 643

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
             EK   L YHSEKLA+AFGL+S       L +VKNLRIC DCH + K IS +  REI V
Sbjct: 644 PDEKERRLLYHSEKLAVAFGLISTEEWVPIL-VVKNLRICGDCHNAIKLISAITGREITV 702

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD +R+H F  G C+CGD W
Sbjct: 703 RDTHRFHCFKEGHCSCGDYW 722



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 203/428 (47%), Gaps = 44/428 (10%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPT 92
           YN LI  Y+K +L+  + ++F+ IP P+IVS+  LI+A+++      +L +F  +     
Sbjct: 78  YNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRE--- 134

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGL--SLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           L F  +  TL+ +   C         GL   LH   +           +A++  YSR   
Sbjct: 135 LRFGLDGFTLSGVIIACGD-----DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGF 189

Query: 151 PDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
            + A++VF E+ E   RD V + AMIV   Q+   ++++ +F +M    +   M+ ++  
Sbjct: 190 LNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASV 249

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-AGIVSDARRVFDENLSVL 266
           L A   +  +      HG  + SG   N  VG+GLID Y K AG + + R+VF+E ++  
Sbjct: 250 LTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEE-IAAP 308

Query: 267 NSIAWNAMMAGYAQQGDQST-VLELFHLLEMRGFAPDEYSFLAVLTALCNA--------- 316
           + + WN M++G++Q  D S   +  F  ++  GF PD+ SF+ V +A  N          
Sbjct: 309 DLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQV 368

Query: 317 -GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             LA +S+    R+ V             L++   + G + DA R+   MP E +     
Sbjct: 369 HALAIKSDIPYNRVSVN----------NALVAMYSKCGNVHDARRVFDTMP-EHNMVSLN 417

Query: 376 ALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           ++++  A HG    + ++ + ++  DI P +   ++ V +     G+ +E  +   +MK+
Sbjct: 418 SMIAGYAQHGVEVESLRLFELMLQKDIAP-NTITFIAVLSACVHTGKVEEGQKYFNMMKE 476

Query: 434 R-RVRKEG 440
           R R+  E 
Sbjct: 477 RFRIEPEA 484



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 15/233 (6%)

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           P  ++L N  TL  L+  C SL +A          S  L+ +   F  + L++ Y++   
Sbjct: 41  PPSTYLSNHFTL--LYSKCGSLHNA--------QTSFDLTQYPNVFSYNTLINAYAKHSL 90

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
              A++VFDEI + D+V Y  +I  +A       +L +FA++R    G   + +SG + A
Sbjct: 91  IHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIA 150

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE--NLSVLNS 268
             +   +   R +H   VV G D    V   ++  Y + G +++ARRVF E       + 
Sbjct: 151 CGDDVGL--VRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDE 208

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL-CNAGLAG 320
           ++WNAM+    Q  +    +ELF  +  RG   D ++  +VLTA  C   L G
Sbjct: 209 VSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVG 261


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 198/593 (33%), Positives = 320/593 (53%), Gaps = 41/593 (6%)

Query: 19  RIVHARALKSSQAD-RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HS 75
           R VHAR LK   AD  S    L++ Y++S LL  + R F+  P  ++  ++AL++A  HS
Sbjct: 21  RRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHS 80

Query: 76  NSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           + P L L +   ML    L   P+   LASL      L  +   G  LH+          
Sbjct: 81  SDPELVLPLLRRMLSDDALR--PDHFVLASLASAAGRL-RSLRLGRQLHAHFAASPYSAD 137

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               S+L+  Y +   P +A+KVFD I  ++ V + A+I G+A N    ++L +F  M +
Sbjct: 138 NVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPA 197

Query: 195 SDVGSTMYCVSGALRA--------------------------------AAELAAMEQCRV 222
             + +    +SG ++A                                AA+LAA+   R 
Sbjct: 198 HGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQ 257

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +HG  +  G   ++IVG  L+D Y K   +  AR VF E ++V + I+W  ++ G AQ G
Sbjct: 258 LHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVF-EGITVRDVISWTTILVGEAQHG 316

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
               V  L++ + + G  P+E +F+ ++ A  +AGL  +  +  + MK  Y ++PG++HY
Sbjct: 317 RAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHY 376

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
           TC +  + R+G L +AE++   MP+EPD A W ALLS    H    M  ++   L+++ P
Sbjct: 377 TCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRP 436

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
            D S Y++++NV +   +WD VA+VRK+M +  +RK  G SW+E   +  +F AG+   +
Sbjct: 437 KDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLD 496

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
             E+I   L EL+ E  + GYVP    ++H++ + EK + L+ HSE+LA+AFG++   P 
Sbjct: 497 VGEEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPP- 555

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           G  +R+VKNLR+C DCH   K+IS + +R+I+VRD +R+H F +G+C+C + W
Sbjct: 556 GSVIRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 206/599 (34%), Positives = 311/599 (51%), Gaps = 52/599 (8%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+++S   D+++   L   Y+ S  L  ++ L    P P  V +T+ I AHS+  L
Sbjct: 43  IHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGL 102

Query: 80  ---SLNIFLSML--RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
              +L +   ML  RH     LP   TL++    C  L+     G +LH  ++KL+L  +
Sbjct: 103 HRAALALLSEMLLSRH---GLLPTAHTLSASLPACGCLA----VGRALHGYAVKLALSGE 155

Query: 135 PFCGSALVHFY--------------------------------SRFRSPDNAKKVFDEIR 162
           P+  +AL+  Y                                ++    D+A+ +FD + 
Sbjct: 156 PYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALP 215

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
            +D+VC+ AM+ G+ Q+ R  ++L +F  M  S V      V  AL A A+L   E  R 
Sbjct: 216 RKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRW 275

Query: 223 IHGHAVVSG----LDRNVIVGTGLIDGYGKAGIVSDARRVFDE--NLSVLNSIAWNAMMA 276
           +H      G    +  N  VGT L+D Y K G + +A  VF +       + +AWNAM+ 
Sbjct: 276 LHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMIN 335

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GYA  G     LE F  L  +G  P + +F+ VL A  ++GL  E       M+  Y + 
Sbjct: 336 GYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIV 395

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
           P +EHY C++  +GRAGR+E+A  +  +M  +PDAA+W +LL    +H    +  ++   
Sbjct: 396 PKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADY 455

Query: 397 LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLA 456
           L+     +   YV+++N+ +  G+W EV  VR +M+   V+KE G S +EV  +V  F+A
Sbjct: 456 LVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVA 515

Query: 457 GDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGL 516
           GDR H R+ +IY KL E+       G+VP  + +LH++ D  K  AL  HSEKLALAFGL
Sbjct: 516 GDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGL 575

Query: 517 VSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +S  PR   ++IVKNLR C DCH   K +S    R+IV RD NR+H F++GSC+CGD W
Sbjct: 576 ISTPPR-TGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 153/381 (40%), Gaps = 60/381 (15%)

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           RHP           A+L   CAS S A      +H+ +++ S+         L   Y+  
Sbjct: 14  RHPAGGGALTADRAAALLAGCASASRA----AEIHAAAVRASVDQDKAVAFRLQRAYAAS 69

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG--STMYCVSG 206
              D A  +     +   V Y + I   +       +L++ ++M  S  G   T + +S 
Sbjct: 70  GRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSA 129

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGL--------------------------------DR 234
           +L A   LA     R +HG+AV   L                                D 
Sbjct: 130 SLPACGCLAV---GRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDP 186

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           +V+  T ++  Y K G + DAR +FD  L   + + WNAMM GY Q G  S  L LF  +
Sbjct: 187 HVVSVTAMLSCYAKMGQLDDARGLFDA-LPRKDLVCWNAMMDGYTQHGRPSEALRLFRQM 245

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE--------RMKVRYKLEPGLEHYTCLI 346
              G  PDE S +  L+A+   G A ES +W+         R +VR     G    T L+
Sbjct: 246 LRSGVEPDEVSVVLALSAVAQLGTA-ESGRWLHSFVANGGRRARVRLNARVG----TALV 300

Query: 347 SAMGRAGRLEDAERI--AMAMPFEPDAAVWRALLSFSAIHGKADMA-SKMGK-RLIDINP 402
               + G LE+A  +   +    + D   W A+++  A+HG++  A    G+ R   + P
Sbjct: 301 DMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWP 360

Query: 403 YDDSAYVIVANVLSGVGRWDE 423
            D + ++ V N  S  G  DE
Sbjct: 361 TDIT-FIGVLNACSHSGLVDE 380


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 300/539 (55%), Gaps = 3/539 (0%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N LI  Y +S     + ++F+ +P  N+ +W A+++       +        R   L FL
Sbjct: 122 NILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFL 181

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P++  L S+ + CA L  A + G  +H    K          S+L H Y +  S    ++
Sbjct: 182 PDEFALGSVLRGCAGL-RALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGER 240

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +   +  ++VV +  +I G AQN    + L  +  M+ +            + + +ELA 
Sbjct: 241 LIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELAT 300

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           + Q + IH   + +G    V V + LI  Y + G +  + +VF E  +  + + W++M+A
Sbjct: 301 LGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENG-DVVCWSSMIA 359

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
            Y   G     ++LF+ +E      ++ +FL++L A  + GL  +  K+ + M  +Y ++
Sbjct: 360 AYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVK 419

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
           P LEHYTC++  +GR G +E+AE +  +MP + D   W+ LLS   IH K +MA ++ + 
Sbjct: 420 PRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEE 479

Query: 397 LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLA 456
           +  ++P D   YV+++N+ +   RWD+V++VRK M+DR+++KE G SW+EVK ++H F  
Sbjct: 480 VFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCM 539

Query: 457 GDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGL 516
           GD+ H ++ +I + L EL  E ++ GYVP  D +LH++   +K  +L +HSEKLA+AF L
Sbjct: 540 GDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFAL 599

Query: 517 VSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +   P G  +R++KNLR+C DCH + KYIS +  REI+VRD +R+H F NG C+CGD W
Sbjct: 600 LY-TPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 151/335 (45%), Gaps = 39/335 (11%)

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR-------------- 147
            + L ++C S  ++   G  LHSL +        F  + L++ YS+              
Sbjct: 55  FSHLLQSCIS-ENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVM 113

Query: 148 ---------------FRSPD--NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                          FRS D   A+K+FDE+ ER+V  + AM+ G  Q     + L +F+
Sbjct: 114 PRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFS 173

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            M         + +   LR  A L A+   R +HG+    G + N++V + L   Y K G
Sbjct: 174 RMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCG 233

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            + +  R+    +   N +AWN ++AG AQ G    VL+ +++++M GF PD+ +F++V+
Sbjct: 234 SLGEGERLI-RAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVI 292

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           ++       G+ ++ I    ++      +   + LIS   R G LE + ++ +      D
Sbjct: 293 SSCSELATLGQGQQ-IHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECE-NGD 350

Query: 371 AAVWRALLSFSAIHGKA----DMASKMGKRLIDIN 401
              W ++++    HG+     D+ ++M +  ++ N
Sbjct: 351 VVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEAN 385



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 106/261 (40%), Gaps = 3/261 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH    K   + +  + ++L   Y K   L    RL   +PS N+V+W  LI+  + +
Sbjct: 204 RQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQN 263

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                +           F P++ T  S+  +C+ L+     G  +H+  +K         
Sbjct: 264 GYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELA-TLGQGQQIHAEVIKAGASLIVSV 322

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            S+L+  YSR    + + KVF E    DVVC+ +MI  +  + R V+++ +F  M    +
Sbjct: 323 ISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKL 382

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS-GLDRNVIVGTGLIDGYGKAGIVSDAR 256
            +        L A +     E+        V   G+   +   T ++D  G+ G V +A 
Sbjct: 383 EANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAE 442

Query: 257 RVFDENLSVLNSIAWNAMMAG 277
            +        + I W  +++ 
Sbjct: 443 ALIRSMPVKADVITWKTLLSA 463


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 200/569 (35%), Positives = 313/569 (55%), Gaps = 24/569 (4%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  +LK     + S+ N L+T Y+++  L+   ++F+ +P  + VSW ++I A + S  
Sbjct: 437 IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSER 496

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASL----FKTCASLSHAFLFG---LSLHSLSLKLSLH 132
           SL           + FL  QR    L    F +  S   +  FG     +H L+LK ++ 
Sbjct: 497 SLP-------EAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIA 549

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSV--F 189
           D+    +AL+  Y +    D  +K+F  + ER D V + +MI G+  N  L  +L +  F
Sbjct: 550 DEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWF 609

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
                  + S MY     L A A +A +E+   +H  +V + L+ +V+VG+ L+D Y K 
Sbjct: 610 MLQTGQRLDSFMYAT--VLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKC 667

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLA 308
           G +  A R F+  + V NS +WN+M++GYA+ G     L+LF  +++ G   PD  +F+ 
Sbjct: 668 GRLDYALRFFN-TMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVG 726

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           VL+A  +AGL  E  K  E M   Y L P +EH++C+   +GRAG L+  E     MP +
Sbjct: 727 VLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMK 786

Query: 369 PDAAVWRALLSFS--AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
           P+  +WR +L     A   KA++  K  + L  + P +   YV++ N+ +  GRW+++ +
Sbjct: 787 PNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVK 846

Query: 427 VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
            RK MKD  V+KE G SW+ +K  VH+F+AGD+ H   + IY KL EL  +    GYVP 
Sbjct: 847 ARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQ 906

Query: 487 WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
               L+++    K E L YHSEKLA+AF L +       +RI+KNLR+C DCH +FKYIS
Sbjct: 907 TGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYIS 966

Query: 547 RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++  R+I++RD NR+H F +G+C+C D W
Sbjct: 967 KIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 177/371 (47%), Gaps = 17/371 (4%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKS-NLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R +H    K S A D  + N LI+ Y K    + Y+L  F  I   N VSW ++IS +S 
Sbjct: 124 RQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQ 183

Query: 77  SP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LH 132
           +     +  IF SM    +    P + T  SL  T  SL+   +  L     +++ S L 
Sbjct: 184 AGDQRSAFRIFSSMQYDGSR---PTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLL 240

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F GS LV  +++  S   A+KVF+++  R+ V    ++VG  +     ++  +F DM
Sbjct: 241 TDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM 300

Query: 193 RSS-DVGSTMYCV---SGALRAAAELAAMEQCRVIHGHAVVSGL-DRNVIVGTGLIDGYG 247
            S  DV    Y +   S    + AE   +++ R +HGH + +GL D  V +G GL++ Y 
Sbjct: 301 NSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYA 360

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G ++DARRVF   ++  +S++WN+M+ G  Q G     +E +  +      P  ++ +
Sbjct: 361 KCGSIADARRVF-YFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLI 419

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           + L++  +   A   ++ I    ++  ++  +     L++     G L +  +I  +MP 
Sbjct: 420 SSLSSCASLKWAKLGQQ-IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP- 477

Query: 368 EPDAAVWRALL 378
           E D   W +++
Sbjct: 478 EHDQVSWNSII 488



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 184/413 (44%), Gaps = 14/413 (3%)

Query: 19  RIVHARALKSSQAD--RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R VH   + +   D    I N L+  Y+K   ++ + R+F  +   + VSW ++I+    
Sbjct: 333 REVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQ 392

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +     ++  + SM RH     LP   TL S   +CASL  A L G  +H  SLKL +  
Sbjct: 393 NGCFIEAVERYKSMRRH---DILPGSFTLISSLSSCASLKWAKL-GQQIHGESLKLGIDL 448

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR-LVDSLSVFADM 192
                +AL+  Y+     +  +K+F  + E D V + ++I   A++ R L +++  F + 
Sbjct: 449 NVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNA 508

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           + +         S  L A + L+  E  + IHG A+ + +         LI  YGK G +
Sbjct: 509 QRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEM 568

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
               ++F       +++ WN+M++GY      +  L+L   +   G   D + +  VL+A
Sbjct: 569 DGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSA 628

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +     E    +    VR  LE  +   + L+    + GRL+ A R    MP   ++ 
Sbjct: 629 FASVATL-ERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVR-NSY 686

Query: 373 VWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYVIVANVLSGVGRWDE 423
            W +++S  A HG+ + A K+ +  +L    P D   +V V +  S  G  +E
Sbjct: 687 SWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEE 739



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 167/377 (44%), Gaps = 25/377 (6%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R  H+R  K+ + D+ +Y  NNLI  Y ++     + ++F+ +P  N VSW  ++S +S 
Sbjct: 21  RFFHSRLYKN-RLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL-SHAFLFGLSLHSLSLKLSLHDKP 135
           +       + +          NQ    S+ + C  + S   LFG  +H L  KLS     
Sbjct: 80  NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139

Query: 136 FCGSALVHFYSR-FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              + L+  Y +   S   A   F +I  ++ V + ++I  ++Q      +  +F+ M+ 
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQY 199

Query: 195 SDVGSTMYCVSGALRAAAELAA-----MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
                T Y     +  A  L       +EQ   I      SGL  ++ VG+GL+  + K+
Sbjct: 200 DGSRPTEYTFGSLVTTACSLTEPDVRLLEQ---IMCTIQKSGLLTDLFVGSGLVSAFAKS 256

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ--GDQSTVLELFHLLEMRGFAPDEYSFL 307
           G +S AR+VF++ +   N++  N +M G  +Q  G+++T L    +  M   +P+ Y  L
Sbjct: 257 GSLSYARKVFNQ-METRNAVTLNGLMVGLVRQKWGEEATKL-FMDMNSMIDVSPESYVIL 314

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC-----LISAMGRAGRLEDAERIA 362
             L++     LA E      R    + +  GL  +       L++   + G + DA R+ 
Sbjct: 315 --LSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVF 372

Query: 363 MAMPFEPDAAVWRALLS 379
             M  + D+  W ++++
Sbjct: 373 YFMT-DKDSVSWNSMIT 388


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 182/520 (35%), Positives = 279/520 (53%), Gaps = 21/520 (4%)

Query: 65  VSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQR---------TLASLFKTCASLSHA 115
           VSW +LI         L           LSF    R         TL S+  + AS+   
Sbjct: 7   VSWNSLI---------LGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMK-V 56

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
               +S+H L +K          +AL+  Y++    D A  VF ++ ++DVV + +++ G
Sbjct: 57  MQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTG 116

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           ++ N    +++ +F  MR S V      V+  L A AEL  M+  + IH   V SGL+ +
Sbjct: 117 YSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESS 176

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           + V   L+  Y K G + DA R FD N+   + I+W A++ GYAQ G     L+ +  + 
Sbjct: 177 LSVDNSLVTMYAKCGSIVDANRAFD-NMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMI 235

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G  PD  +F+ +L A  + GL G    + E M   Y ++PG EHY C+I  +GR+G+L
Sbjct: 236 ATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKL 295

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
            +A+ +   M   PDA VW+ALL+   +H + ++     K L ++ P +   YV+++N+ 
Sbjct: 296 AEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMY 355

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           S  G+W++ A +R++M+ R + KE G SWIE   KV  F++ DR H    +IY+K+ E++
Sbjct: 356 SAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEII 415

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
              +  GYVP     LH+  D  K   L YHSEKLA+AFGL++  P+G  +RI KNLR+C
Sbjct: 416 MLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLT-VPQGAPIRIFKNLRVC 474

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            DCH + KY S+V  R I++RD N +H F  G C+CGD W
Sbjct: 475 GDCHTAMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 127/264 (48%), Gaps = 13/264 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   +K+  +A + + N LI  Y+K   L  ++ +F+ +   ++VSWT+L++ +S++  
Sbjct: 63  VHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGS 122

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                    +       P+Q  +AS+   CA L+    FG  +H+  +K  L       +
Sbjct: 123 YEEAIKLFCKMRISGVYPDQIAVASVLSACAELT-VMDFGQQIHATLVKSGLESSLSVDN 181

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +LV  Y++  S  +A + FD +  RDV+ + A+IVG+AQN R   SL  +  M ++    
Sbjct: 182 SLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKP 241

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYGKAGIVS 253
                 G L A +    +       G A    +D+   +  G      +ID  G++G ++
Sbjct: 242 DYITFIGLLFACSHNGLLGS-----GRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLA 296

Query: 254 DARRVFDENLSVLNSIAWNAMMAG 277
           +A+ + ++ +   +++ W A++A 
Sbjct: 297 EAKGLLNQMVVAPDAVVWKALLAA 320



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 3/234 (1%)

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
           D V + ++I+G  +     D+LS F  MRS D+    Y +   L + A +  M+    +H
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
              + +G +   +V   LID Y K G +  A  VF + +   + ++W +++ GY+  G  
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDK-DVVSWTSLVTGYSHNGSY 123

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              ++LF  + + G  PD+ +  +VL+A C      +  + I    V+  LE  L     
Sbjct: 124 EEAIKLFCKMRISGVYPDQIAVASVLSA-CAELTVMDFGQQIHATLVKSGLESSLSVDNS 182

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           L++   + G + DA R    MP   D   W AL+   A +G+   + +   ++I
Sbjct: 183 LVTMYAKCGSIVDANRAFDNMPTR-DVISWTALIVGYAQNGRGKHSLQFYDQMI 235


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/559 (33%), Positives = 313/559 (55%), Gaps = 11/559 (1%)

Query: 21  VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS-- 77
           +H  A+++  A   +I   L   YSK   +  +  +F+ +    +VSW +++  +  +  
Sbjct: 270 IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329

Query: 78  -PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++ +F  ML        P   T+      CA L      G  +H    +L+L     
Sbjct: 330 PEKAIAVFEKMLEE---GIDPTGVTIMEALHACADLGD-LERGKFVHKFVDQLNLGSDIS 385

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  YS+ +  D A  +F+ +  R  V + AMI+G+AQN R+ ++L+ F++M+S  
Sbjct: 386 VMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLG 445

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +    + +   + A AEL+     + IHG  + S LD+N+ V T L+D Y K G +  AR
Sbjct: 446 MKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMAR 505

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           ++FD  +S  + I WNAM+ GY   G     L+LF  ++     P++ ++L+V++A  ++
Sbjct: 506 KLFDM-ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHS 564

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E  +  + MK  Y LEP ++HY  ++  +GRAGR+++A      MP  P   V+ A
Sbjct: 565 GLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGA 624

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           +L    IH   ++  K  K+L ++NP +   +V++AN+ +   +W +VAEVRK M+ + +
Sbjct: 625 MLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGL 684

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S +E++ +VH F +G   H +++ IY  L EL+ E +  GYVP  + +L +V D
Sbjct: 685 KKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVED 743

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             + + L  HSEKLA+AFGL++ +P G T+ + KNLR+C DCH + KYIS V  REI+VR
Sbjct: 744 DVQEQLLNSHSEKLAIAFGLLNTSP-GTTIHVRKNLRVCGDCHNATKYISLVTGREIIVR 802

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D+ R+H F NG C+CGD W
Sbjct: 803 DMQRFHHFKNGICSCGDYW 821



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 157/360 (43%), Gaps = 20/360 (5%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSPLSLNI-FLSMLRHPTLSFL 96
           L++ +SK   ++ + R+F  I    + +  T L     NS L   + FL  +R+  +   
Sbjct: 87  LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK-- 144

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P       L K C   +     G  +H   +  S     F  + +V+ Y++ R  D+A K
Sbjct: 145 PVVYNFTYLLKVCGD-NADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYK 203

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +FD + ERD+V +  +I GF+QN     +L +   M+          +   L AAA++  
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +   + IHG+A+ +G  + V + T L D Y K G V  AR +FD  +     ++WN+MM 
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFD-GMDQKTVVSWNSMMD 322

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GY Q G+    + +F  +   G  P   + +  L A  + G   E  K++ +   +  L 
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDL-ERGKFVHKFVDQLNLG 381

Query: 337 PGLEHYTCLISAMGRAGRLEDAERI-------------AMAMPFEPDAAVWRALLSFSAI 383
             +     LIS   +  R++ A  I             AM + +  +  V  AL  FS +
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 164/350 (46%), Gaps = 28/350 (8%)

Query: 69  ALISAHSNSPLSLNIFLSM---LRHPTLS---FLPN---QRTLASLFKTCASLSHAFLFG 119
           A++ AH+ +PL  +        L   TLS    +P+   +   A L + C S+       
Sbjct: 10  AIVKAHNQTPLKSSSITIPSSPLPFHTLSERAHIPSHVYKHPAAVLLELCTSMK------ 63

Query: 120 LSLHS---LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
             LH    L +K  L+++    + LV  +S++ S + A +VF+ I ++    Y  M+ G+
Sbjct: 64  -ELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           A+NS L  +L+    MR  DV   +Y  +  L+   + A +++ + IHG  + +    NV
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANV 182

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
              TG+++ Y K   + DA ++FD  +   + ++WN ++AG++Q G     LEL   ++ 
Sbjct: 183 FAMTGVVNMYAKCRQIDDAYKMFDR-MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD 241

Query: 297 RGFAPDEYSFLAVLTALCNAGL--AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
            G  PD  + + VL A  + GL   G+S   I    +R      +   T L     + G 
Sbjct: 242 EGQRPDSITLVTVLPAAADVGLLMVGKS---IHGYAIRAGFAKLVNISTALADMYSKCGS 298

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INP 402
           +E A  I   M  +     W +++     +G+ + A  + +++++  I+P
Sbjct: 299 VETARLIFDGMD-QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP 347


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 189/549 (34%), Positives = 294/549 (53%), Gaps = 9/549 (1%)

Query: 30   QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
            Q D  I       Y   N +  +  +F  IP+P    W  +I   +       SL ++  
Sbjct: 749  QYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSK 808

Query: 87   MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
            M+        P++       K+CA LS     G  +H   +     +  F  +ALV  Y+
Sbjct: 809  MMEK---GLKPDKFAFPFALKSCAGLSD-LQRGKVIHQHLVCCGCSNDLFVDAALVDMYA 864

Query: 147  RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
            +    + A+ VFD++  RD+V + +MI G+A N    ++L  F  MRSS V      +  
Sbjct: 865  KCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILS 924

Query: 207  ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
             L A   L A+ +    H + + +G + +++V T ++D Y K G +  AR +FDE     
Sbjct: 925  VLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGK- 983

Query: 267  NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
            + + W+AM+A Y   G     ++LF  +   G  P   +F  VL+A  ++GL  E + + 
Sbjct: 984  DLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYF 1043

Query: 327  ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
            + M   + +   L +Y C++  +GRAG+L +A  +   MP EPDA++W +LL    IH  
Sbjct: 1044 QLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNN 1103

Query: 387  ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
             D+A K+   L  ++P     +V+++N+ +   RW+EV +VRK+M  R   K  G S +E
Sbjct: 1104 LDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVE 1163

Query: 447  VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
               +VH F  GDR H + E +Y KL EL    + LGYVP+ D +LH++ +  K  AL YH
Sbjct: 1164 YDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYH 1223

Query: 507  SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
            SE+LA+AFGL++ +P G TLRI KNLRIC DCH + K IS++V R I+VRD++R+HRF +
Sbjct: 1224 SERLAIAFGLINTSP-GTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFED 1282

Query: 567  GSCTCGDLW 575
            G C+CGD W
Sbjct: 1283 GVCSCGDYW 1291



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/507 (30%), Positives = 261/507 (51%), Gaps = 12/507 (2%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSM 87
            D  + N+L+  Y+K+     +  LF+ +P  +++SW+ +I+ ++N+  +   LN+F  M
Sbjct: 239 GDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM 298

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           +      F PN  T+ S  + CA +S     G  +H +++           +AL+  Y +
Sbjct: 299 IEK---RFEPNSVTVVSALQACA-VSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMK 354

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
              PD A  +F  + ++DVV + A++ G+AQN     S+ VF +M S  +      V   
Sbjct: 355 CSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKI 414

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A++EL   +Q   +HG+ V SG + NV VG  LI+ Y K G + DA ++F + + V +
Sbjct: 415 LAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLF-KGMIVRD 473

Query: 268 SIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
            + W++M+A Y   G     LE+F  +++     P+  +FL++L+A  +AGL  E  K  
Sbjct: 474 VVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIF 533

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           +RM   Y+L P  EH+  ++  +GR G+L  A  I   MP      VW ALL    IH  
Sbjct: 534 DRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHN 593

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            +M     K L  ++P     Y++++N+ +  G+WD VAE+R  +K+R ++K  G+S +E
Sbjct: 594 IEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVE 653

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           V+G VH FLA DR H  ++ IY  L +L  +  +  Y+P  D +LH+ G   +    W  
Sbjct: 654 VRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDTGAVLQ---FWQR 710

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLR 533
            +     +  +  AP   T+     L+
Sbjct: 711 IKATESKYKTIGSAPGTDTISCFSCLK 737



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 172/385 (44%), Gaps = 14/385 (3%)

Query: 10  QPQNTSTDPRIVHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           Q  N       +H++  K+     + +   L + Y+K   L  + ++F+  P PN+  W 
Sbjct: 12  QACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWN 71

Query: 69  ALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL 125
           + + ++        +L +F  M+   T    P+  T+    K CA L    L G  +H  
Sbjct: 72  STLRSYCREKQWEETLRLFHLMI--CTAGEAPDNFTIPIALKACAGLRMLEL-GKVIHGF 128

Query: 126 SLKL-SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
           + K   +    F GSALV  YS+      A KVF+E +  D V + +M+ G+ QN+   +
Sbjct: 129 AKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEE 188

Query: 185 SLSVFADMRSSD--VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
           +L++F+ M   D  V   +  VS  + A A+L  ++    +HG  +    D ++ +   L
Sbjct: 189 ALALFSQMVMMDCVVLDPVTLVS-VVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSL 247

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           ++ Y K G    A  +F + +   + I+W+ M+A YA     +  L LFH +  + F P+
Sbjct: 248 LNLYAKTGCEKIAANLFSK-MPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPN 306

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
             + ++ L A C      E  K I ++ V    E      T LI    +    ++A  + 
Sbjct: 307 SVTVVSALQA-CAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLF 365

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKA 387
             +P + D   W ALLS  A +G A
Sbjct: 366 QRLP-KKDVVSWVALLSGYAQNGMA 389


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 311/561 (55%), Gaps = 11/561 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           R +H  ++++  ++  ++   L+  YSK   +  +  +F+ +    +VSW ++I  +   
Sbjct: 296 RSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQN 355

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +   ++ IF  M+       + N   + +L   CA L      G  +H L  +L L   
Sbjct: 356 GDPGAAMEIFQKMMDEQVE--MTNVTVMGAL-HACADLGDVEQ-GRFVHKLLDQLELGSD 411

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               ++L+  YS+ +  D A ++F+ ++ + +V + AMI+G+AQN R+ +++  F  M+ 
Sbjct: 412 VSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQL 471

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            ++    + +   + A AEL+ + Q + IHG  + + LD+NV V T L+D Y K G V  
Sbjct: 472 QNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHT 531

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR++FD  +   +   WNAM+ GY   G     LELF  ++     P+E +FL VL+A  
Sbjct: 532 ARKLFDM-MDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACS 590

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++GL  E  ++   MK  Y LEP ++HY  ++  +GRA RL +A      MP EP  +V+
Sbjct: 591 HSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVF 650

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            A+L    IH   ++  K   R+ D++P D   +V++AN+ +    WD+VA VR  M+ +
Sbjct: 651 GAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKK 710

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++K  G S +E++ +VH F +G   H + + IY  L  L    +  GY+P  +  +H+V
Sbjct: 711 GIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNS-VHDV 769

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            D  K + L  HSEKLA+AF L++ +P G T+ + KNLR+C DCH + KYIS V +REI+
Sbjct: 770 EDVVKEQLLNSHSEKLAIAFSLLNTSP-GTTIHLRKNLRVCGDCHNATKYISLVTKREII 828

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD+ R+H F +G+C+CGD W
Sbjct: 829 VRDMRRFHHFKDGTCSCGDYW 849



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 170/367 (46%), Gaps = 8/367 (2%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           ++  Y+K  L+  + ++F+ +P  ++V W  +IS ++ +         +LR       P+
Sbjct: 216 VVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPD 275

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
             T+ S+    A +  +   G S+H  S++          +ALV  YS+  S   A+ +F
Sbjct: 276 SITIVSILPAVADVG-SLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIF 334

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
           D +  + VV + +MI G+ QN     ++ +F  M    V  T   V GAL A A+L  +E
Sbjct: 335 DRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVE 394

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           Q R +H       L  +V V   LI  Y K   V  A  +F ENL     ++WNAM+ GY
Sbjct: 395 QGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIF-ENLQHKTLVSWNAMILGY 453

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           AQ G  +  ++ F  ++++   PD ++ ++V+ AL    +  ++ KWI  + +R  L+  
Sbjct: 454 AQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQA-KWIHGLVIRTCLDKN 512

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA----SKMG 394
           +   T L+    + G +  A ++   M  E     W A++     HG    A     KM 
Sbjct: 513 VFVATALVDMYAKCGAVHTARKLFDMMD-ERHVTTWNAMIDGYGTHGLGKAALELFEKMK 571

Query: 395 KRLIDIN 401
           K +I  N
Sbjct: 572 KEVIKPN 578



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 142/303 (46%), Gaps = 19/303 (6%)

Query: 103 ASLFKTCASLS--HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           A L + C S+   H F+       L +K  L+ +    + LV  + +F S   A +VF  
Sbjct: 81  AILLELCTSMKELHQFI------PLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQP 134

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           I ++    Y  M+ G+A+NS L D++S F  MR   V   +Y  +  L+   + A + + 
Sbjct: 135 IEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKG 194

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           + IH   +V+G   NV   TG+++ Y K  +V +A ++FD  +   + + WN +++GYAQ
Sbjct: 195 KEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDR-MPERDLVCWNTIISGYAQ 253

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G   T LEL   ++  G  PD  + +++L A+ + G        I R    Y +  G E
Sbjct: 254 NGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVG-----SLRIGRSIHGYSMRAGFE 308

Query: 341 HY----TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
            +    T L+    + G +  A  I   M  +     W +++     +G    A ++ ++
Sbjct: 309 SFVNVSTALVDMYSKCGSVGTARLIFDRMTGKT-VVSWNSMIDGYVQNGDPGAAMEIFQK 367

Query: 397 LID 399
           ++D
Sbjct: 368 MMD 370



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 3/255 (1%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  + +V+ Y++ R  + A K+FD + ERD+VC+  +I G+AQN     +L +   M+  
Sbjct: 211 FAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEE 270

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                   +   L A A++ ++   R IHG+++ +G +  V V T L+D Y K G V  A
Sbjct: 271 GKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTA 330

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R +FD  ++    ++WN+M+ GY Q GD    +E+F  +          + +  L A  +
Sbjct: 331 RLIFDR-MTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACAD 389

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            G   E  +++ ++  + +L   +     LIS   +  R++ A  I   +  +   + W 
Sbjct: 390 LGDV-EQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVS-WN 447

Query: 376 ALLSFSAIHGKADMA 390
           A++   A +G+ + A
Sbjct: 448 AMILGYAQNGRINEA 462


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 207/559 (37%), Positives = 314/559 (56%), Gaps = 28/559 (5%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA---HSNSPLSLNIFLSMLR 89
           S+ N  +T YSK  LL  ++ +F  +    + VSW ++I A   H     +L ++  M+ 
Sbjct: 174 SVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIF 233

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                F  +  TLAS+     SL H  + G   H   +K   H     GS L+ FYS+  
Sbjct: 234 K---GFKIDMFTLASVLNALTSLDH-LIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCG 289

Query: 150 SPD---NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADM-----RSSDVGST 200
             D   +++KVF EI   D+V +  MI G++ N    + ++  F  M     R  D   +
Sbjct: 290 GRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDC--S 347

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIVSDARRVF 259
             CV+ A    + L++  Q + IHG A+ S +  N I V   LI  Y K+G + DARRVF
Sbjct: 348 FVCVTSA---CSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVF 404

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D  +  LN++++N M+ GYAQ G  +  L L+  +   G AP+  +F+A+L+A  + G  
Sbjct: 405 DR-MPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKV 463

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E +K+   MK  +K+EP  EHY+C+I  +GRAG+LE+AER   AMP++P +  W ALL 
Sbjct: 464 DEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLG 523

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
               H    +A +  K L+ + P   + YV++AN+ +  G+W+E+A VRK M+ +R+RK+
Sbjct: 524 ACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKK 583

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV--PVWDEMLHNVGDR 497
            G SWIEVK K HVF+A D  H    ++   L E+M++ +++GYV    W  +  +    
Sbjct: 584 PGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGE 643

Query: 498 EKREA-LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            + E  L +HSEKLA+AFGL+S    G+ + +VKNLRIC DCH + K++S V  REI+VR
Sbjct: 644 GEEEMRLGHHSEKLAVAFGLMS-TRDGEEIVVVKNLRICGDCHNAIKFMSAVAGREIIVR 702

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F +G C+CGD W
Sbjct: 703 DNLRFHCFKDGKCSCGDYW 721



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 202/423 (47%), Gaps = 19/423 (4%)

Query: 22  HARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +ARA   S  + ++  YN ++  Y+K + +  + +LF+  P P+ VS+  LIS ++++  
Sbjct: 61  YARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARE 120

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           ++   +   R   L F  +  TL+ L   C            LH  ++           +
Sbjct: 121 TVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLI---KQLHCFAVSGGFDSYSSVNN 177

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           A V +YS+      A  VF  +   RD V + +MIV + Q+     +L+++ +M      
Sbjct: 178 AFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFK 237

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG---IVSDA 255
             M+ ++  L A   L  +   R  HG  + +G  +N  VG+GLID Y K G    +SD+
Sbjct: 238 IDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDS 297

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQS-TVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            +VF E LS  + + WN M++GY+   + S   ++ F  ++  G  PD+ SF+ V +A  
Sbjct: 298 EKVFQEILSP-DLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACS 356

Query: 315 NAGLAGESE-KWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
           N  L+  S+ K I  + ++  +    +     LIS   ++G L DA R+   MP E +A 
Sbjct: 357 N--LSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMP-ELNAV 413

Query: 373 VWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
            +  ++   A HG    A ++ +R++D  I P ++  +V + +  +  G+ DE  +    
Sbjct: 414 SFNCMIKGYAQHGHGTEALRLYQRMLDSGIAP-NNITFVAILSACAHCGKVDEGQKYFNT 472

Query: 431 MKD 433
           MK+
Sbjct: 473 MKE 475



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 146/332 (43%), Gaps = 23/332 (6%)

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
           ++L N     +L+  C  LS+A          +   +     F  + +V  Y++      
Sbjct: 43  TYLSNH--FVNLYSKCGCLSYA--------RAAFDSTEEPNVFSYNVIVKAYAKDSKIHI 92

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+++FDE  + D V Y  +I G+A     V ++ +F  MR        + +SG + A  +
Sbjct: 93  ARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCD 152

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
              ++  + +H  AV  G D    V    +  Y K G++ +A  VF     + + ++WN+
Sbjct: 153 --RVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNS 210

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG-LAGESEKWIERMKVR 332
           M+  Y Q  + +  L L+  +  +GF  D ++  +VL AL +   L G  +   + +K  
Sbjct: 211 MIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAG 270

Query: 333 Y----KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS-FSAIHGKA 387
           +     +  GL  +    S  G    + D+E++   +   PD  +W  ++S +S     +
Sbjct: 271 FHQNSHVGSGLIDF---YSKCGGRDGMSDSEKVFQEI-LSPDLVLWNTMISGYSMNEEHS 326

Query: 388 DMASKMGKRLIDINPY-DDSAYVIVANVLSGV 418
           + A K  +++  I    DD ++V V +  S +
Sbjct: 327 EEAVKSFRQMQRIGHRPDDCSFVCVTSACSNL 358


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/550 (33%), Positives = 304/550 (55%), Gaps = 10/550 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLS 86
           ++D  + N+ +  +  + LL  + RLF  +   ++V+W  +I+ +    N   ++ +F  
Sbjct: 238 ESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGR 297

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           + +    +   N  T   +     SL+ +   G  +H L  +          +AL+  Y 
Sbjct: 298 LQQDGVKA---NDITFVLMLNVYTSLT-SLAKGKVIHELVKEAGYDRDAVVATALMSLYG 353

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           R  +P  A K+F ++  +DV+ +  M V +AQN    ++L +F +M+      T   +  
Sbjct: 354 RCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVA 413

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L   A LAA+++ R IH H + +     ++V T LI+ YGK G +++A  VF E ++  
Sbjct: 414 VLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVF-EKMAKR 472

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + + WN+M+  YAQ G     L+LF+ +++ G   D  SF++VL+AL ++G   +  ++ 
Sbjct: 473 DILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYF 532

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP-FEPDAAVWRALLSFSAIHG 385
             M   + + P  E Y C++  +GRAGR+++A  I + +    PD  +W  LL     H 
Sbjct: 533 VAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHN 592

Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445
           K D A    +++++ +P    AYV+++NV +  G WD V  +RK+M+ R V+KE GRS I
Sbjct: 593 KTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSI 652

Query: 446 EVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWY 505
           E+  +VH FL GDR H R   IY +L  L  E    GY+P    +LH+V D  K + L+Y
Sbjct: 653 EILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFY 712

Query: 506 HSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFL 565
           HSE+LA+AFGL+S  P G  LR++KNLR+C DCH + KYIS++  REI+VRD +R+H F 
Sbjct: 713 HSERLAIAFGLIS-TPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFK 771

Query: 566 NGSCTCGDLW 575
           +G C+C D W
Sbjct: 772 DGRCSCKDYW 781



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 191/409 (46%), Gaps = 22/409 (5%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +H + L+   + D  +   LI  Y+K   +  +   F  +   ++VSWTA+I+A   H  
Sbjct: 127 IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQ 186

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSH----AFLFGLSLHSLSLKLSLH 132
             L+  ++  M        +PN+ TL ++F      ++     F++GL    +S  +   
Sbjct: 187 FALARWLYRRM---QLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGL----VSSGVMES 239

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           D     SA V+ +       +A+++F+++ +RDVV +  +I  + QN    +++ +F  +
Sbjct: 240 DVRVMNSA-VNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRL 298

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           +   V +        L     L ++ + +VIH     +G DR+ +V T L+  YG+    
Sbjct: 299 QQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAP 358

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A ++F  ++   + I W  M   YAQ G +   L+LF  +++ G  P   + +AVL  
Sbjct: 359 GQAWKIF-VDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDT 417

Query: 313 LCN-AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
             + A L    +     ++ R+++E  +E  T LI+  G+ G++ +A  +   M  + D 
Sbjct: 418 CAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMSVFEKMA-KRDI 474

Query: 372 AVWRALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIVANVLSGVG 419
            VW ++L   A HG  D   ++  ++ +D    D  ++V V + LS  G
Sbjct: 475 LVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSG 523



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 140/329 (42%), Gaps = 17/329 (5%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF------CGSALVHFYSRFRS 150
           P+     +L + C+S  +        H   +   + D+ F      CG  L+  Y++  S
Sbjct: 2   PDTAFFVALLQRCSSAKNVD------HGRRVHWHVRDRGFEQNNLVCGH-LIQMYAQCGS 54

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
              A++VF+ +  +DV  +  MI  + Q      +L +F  M+  DV  T       L A
Sbjct: 55  VPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNA 114

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A   +++    IHG  +  G + +V VGT LI+ Y K G V  A   F + L   + ++
Sbjct: 115 CASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSF-KRLEHRDVVS 173

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W AM+A   Q    +    L+  +++ G  P++ +   V  A  +     E  K++  + 
Sbjct: 174 WTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLV 232

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
               +E  +      ++  G AG L DA R+   M  + D   W  +++    +     A
Sbjct: 233 SSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITLYVQNENFGEA 291

Query: 391 SKMGKRL-IDINPYDDSAYVIVANVLSGV 418
            ++  RL  D    +D  +V++ NV + +
Sbjct: 292 VRLFGRLQQDGVKANDITFVLMLNVYTSL 320


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/556 (32%), Positives = 303/556 (54%), Gaps = 4/556 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA  ++S   +D  +   L   Y K      +  +F  +   ++++W  +I    +S  
Sbjct: 252 IHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQ 311

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 +  R       P++ T  ++   CA        G  +H+ + K  L      G+
Sbjct: 312 LEEAHGTFHRMLEEGVAPDRATYTTVLSACARPG-GLARGKEIHARAAKDGLVSDVRFGN 370

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL++ YS+  S  +A++VFD + +RDVV +  ++  +A   ++V+S + F  M    V +
Sbjct: 371 ALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKA 430

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                   L+A +   A++  + IH   V +GL  ++ V   L+  Y K G V DA RVF
Sbjct: 431 NKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVF 490

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +S+ + + WN ++ G  Q G     L+ + +++  G  P+  +F+ VL+A     L 
Sbjct: 491 -EGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLV 549

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E  +    M   Y + P  +HY C++  + RAG L +AE + + +P +P AA+W ALL+
Sbjct: 550 EEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLA 609

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IH   ++  +  +  + + P +   YV ++ + +  G W +VA++RK MK+R V+KE
Sbjct: 610 ACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKE 669

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            GRSWIE+ G+VH F+A D+ H RT++IY +L  L ++ + LGYVP    ++H++ D  K
Sbjct: 670 PGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGK 729

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             A+ +HSEKLA+A+GL+S  P G  +RI KNLR+C DCH + K+IS++ +REI+ RD +
Sbjct: 730 ERAVCHHSEKLAIAYGLIS-TPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDAH 788

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F NG C+CGD W
Sbjct: 789 RFHHFKNGECSCGDYW 804



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 164/347 (47%), Gaps = 10/347 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIF--LSMLRHPT 92
           I N L+  Y+    ++ + +LF+   + ++VSW  +IS +++  L+   F   ++++   
Sbjct: 65  ITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQER 124

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           L   P++ T  S+   C+S +    +G  +H   ++  L +    G+AL+  Y++  S  
Sbjct: 125 LE--PDKFTFVSILSACSSPA-VLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVR 181

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A++VFD +  RD V +  +   +A++    +SL  +  M    V  +       L A  
Sbjct: 182 DARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACG 241

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
            LAA+E+ + IH H V S    +V V T L   Y K G   DAR VF E LS  + IAWN
Sbjct: 242 SLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVF-ECLSYRDVIAWN 300

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN-AGLAGESEKWIERMKV 331
            M+ G+   G        FH +   G APD  ++  VL+A     GLA   E  I     
Sbjct: 301 TMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE--IHARAA 358

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           +  L   +     LI+   +AG ++DA ++   MP + D   W  LL
Sbjct: 359 KDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLL 404



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 173/373 (46%), Gaps = 11/373 (2%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H R +++  A D ++ N LI+ Y+K   +  + R+F+ + S + VSWT L  A++ S
Sbjct: 149 REIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAES 208

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                SL  + +ML+       P++ T  ++   C SL+ A   G  +H+  ++   H  
Sbjct: 209 GYGEESLKTYHAMLQE---RVRPSRITYMNVLSACGSLA-ALEKGKQIHAHIVESEYHSD 264

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +AL   Y +  +  +A++VF+ +  RDV+ +  MI GF  + +L ++   F  M  
Sbjct: 265 VRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLE 324

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V       +  L A A    + + + IH  A   GL  +V  G  LI+ Y KAG + D
Sbjct: 325 EGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKD 384

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR+VFD  +   + ++W  ++  YA           F  +  +G   ++ +++ VL A C
Sbjct: 385 ARQVFD-RMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKA-C 442

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +  +A +  K I    V+  L   L     L+S   + G +EDA R+   M    D   W
Sbjct: 443 SNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTW 501

Query: 375 RALLSFSAIHGKA 387
             L+     +G+ 
Sbjct: 502 NTLIGGLGQNGRG 514



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 162/391 (41%), Gaps = 25/391 (6%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           L ++C   +     G  +H   L+  +    +  + L+  Y+   S + A+++FD+   +
Sbjct: 34  LLQSCVK-AKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNK 92

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
            VV +  MI G+A      ++ ++F  M+   +    +     L A +  A +   R IH
Sbjct: 93  SVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIH 152

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
              + +GL  +  VG  LI  Y K G V DARRVFD  ++  + ++W  +   YA+ G  
Sbjct: 153 VRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDA-MASRDEVSWTTLTGAYAESGYG 211

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              L+ +H +      P   +++ VL+A C +  A E  K I    V  +    +   T 
Sbjct: 212 EESLKTYHAMLQERVRPSRITYMNVLSA-CGSLAALEKGKQIHAHIVESEYHSDVRVSTA 270

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           L     + G  +DA  +   + +  D   W  ++      G+ + A     R+++     
Sbjct: 271 LTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAP 329

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG-------GRSWIEVKGKV------ 451
           D A      VLS   R   +A  +++    R  K+G       G + I +  K       
Sbjct: 330 DRA--TYTTVLSACARPGGLARGKEIHA--RAAKDGLVSDVRFGNALINMYSKAGSMKDA 385

Query: 452 -HVFLAGDRMHERTEDIYTKLAELMEECERL 481
             VF   DRM +R    +T L     +C+++
Sbjct: 386 RQVF---DRMPKRDVVSWTTLLGRYADCDQV 413


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/526 (35%), Positives = 296/526 (56%), Gaps = 11/526 (2%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N L   Y K+  L  + +LF+ +P  N+ +W A+++  +N      SL  FL M R   
Sbjct: 176 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRRE-- 233

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYSRFRSP 151
               P++  L S+F+ CA L    + G  +H+  ++  L D+  C GS+L H Y R    
Sbjct: 234 -GMHPDEFGLGSVFRCCAGLRDV-VTGRQVHAYVVRSGL-DRDMCVGSSLAHMYMRCGCL 290

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
              + V   +    +V    +I G  QN     +L  F  MRS  V + +     A+ + 
Sbjct: 291 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 350

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           ++LAA+ Q + IHG  + +G+D+ V V T L+  Y + G + D+ RVF       ++   
Sbjct: 351 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGS-DTFLL 409

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           +AM++ Y   G     +ELF  +   G  P + +FLA+L A  ++GL  E     E M  
Sbjct: 410 SAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 469

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y ++P ++HYTC++  +GR+G L++AE + ++MP  PD  +W+ LLS        DMA 
Sbjct: 470 TYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAE 529

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           ++ KR+I+++P+D ++YV+++N+ +   RW +V+EVRK M+D  VRKE G SW+E+KG +
Sbjct: 530 RIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHI 589

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F  GD  H R ++I   L E+M +  + GY P    +LH++ D EK  +L +HSEKLA
Sbjct: 590 HQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLA 649

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           +AF  +S  P G  +R++KNLR+C DCH + K +S+V  REIVVRD
Sbjct: 650 IAFAFLS-LPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRD 694



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 41/186 (22%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+   R +H  A  SG   +      L+  Y   G ++ AR +F E +   N ++WN + 
Sbjct: 122 ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELF-ERIPRRNVMSWNILF 180

Query: 276 AGYAQQGDQSTVLELFH-----------------------------LLEMR--GFAPDEY 304
            GY + GD     +LF                               L+MR  G  PDE+
Sbjct: 181 GGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEF 240

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG----RAGRLEDAER 360
              +V    C AGL    +    R    Y +  GL+   C+ S++     R G L++ E 
Sbjct: 241 GLGSVFR--CCAGL---RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEA 295

Query: 361 IAMAMP 366
           +   +P
Sbjct: 296 VLRMLP 301


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 304/559 (54%), Gaps = 11/559 (1%)

Query: 21  VHARALKSSQADRSI-YNNLITNYSKSNL--LSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +HAR LK+   +  +    L+ + + S    LSY+  +F+ I  P+  ++  +I AH++S
Sbjct: 7   LHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADS 66

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S ++     +       P+  T   + K CA L      GL LHSL  KL      + 
Sbjct: 67  SPSFSL-SLFSKMAMAGVSPDHFTFPFVLKACARLQT----GLDLHSLLFKLGFDSDVYV 121

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSD 196
            + L+HFY      D A KVF+E+ ERD+V + +MI  FA+N    ++L++F  M+    
Sbjct: 122 QNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT 181

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      V   + A + L  +E  + I G    +GL+  V +GT L+D + + G + ++ 
Sbjct: 182 VKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESM 241

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RVFDE +   N + W A++ G A  G  +  L +F+ +   GF PD  +F  VL A  + 
Sbjct: 242 RVFDE-MGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHG 300

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E     E ++  Y +EP  EHY C++  +GRAG L +A +    MP  P++ +WR 
Sbjct: 301 GLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRT 360

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL     H   ++A K+ +++ +++ Y D  YV+++NV  GVGRW E A VR  M+++R+
Sbjct: 361 LLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRI 420

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            K+ G S I V   +H F+AGD  H + E I   L  +++  + +GY P    +L ++ +
Sbjct: 421 SKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEE 480

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK   L YHSEKLA+AF L+      +T+R++KNLRIC DCH   KY S V EREI++R
Sbjct: 481 EEKESTLGYHSEKLAVAFALLC-FKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIR 539

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F  GSC+C D W
Sbjct: 540 DRNRFHHFSKGSCSCRDYW 558


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 307/549 (55%), Gaps = 13/549 (2%)

Query: 31  ADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSM 87
           +D  +   L+  Y+K  +   + ++ ++F  +P  N++SWTALIS +  S +  N  +++
Sbjct: 279 SDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMAL 338

Query: 88  LRHP-TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
            R     S  PN  T ++L K CA+LS     G  +H+  LK S+      G+ALV  Y+
Sbjct: 339 FREMLNESIRPNHITYSNLLKACANLSDQD-SGRQIHAHVLKTSIAHVNVVGNALVSMYA 397

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
                + A+K FD++ E +++     +     N+      S  + +   D G + +  + 
Sbjct: 398 ESGCMEEARKAFDQLYETNILSMSPDVETERNNA------SCSSKIEGMDDGVSTFTFAS 451

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L AAA +  + + + +H  ++ +G   +  +   L+  Y + G + DA R FDE +   
Sbjct: 452 LLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDE-MKDH 510

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N I+W ++++G A+ G     L +FH + + G  P++ +++AVL+A  + GL  E ++  
Sbjct: 511 NVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHF 570

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             M+  + L P +EHY C++  + R+G +E+A +    MP + DA VW+ LLS    +G 
Sbjct: 571 RSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGN 630

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++       +I++ P D + YV+++N+ +  G WDEVA +R +M+D+ + KE G SW++
Sbjct: 631 TEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMD 690

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           V   +H F AGD  H    DIY KL  L+ E + +GYVP    +LH++ +  K + L  H
Sbjct: 691 VGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYLLQH 750

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEK+A+AFGL++ +   K +RI KNLR+C DCH + KYIS+   REI++RD NR+HR  +
Sbjct: 751 SEKIAVAFGLITTSAT-KPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKD 809

Query: 567 GSCTCGDLW 575
           G C+CG+ W
Sbjct: 810 GICSCGEYW 818



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 135/305 (44%), Gaps = 9/305 (2%)

Query: 19  RIVHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHS 75
           R +H R L+S     D  + N+L+T YSK   +  + R+F+ +    ++VSWTA+ S  +
Sbjct: 60  RALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLA 119

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +         +     L   PN  TL +  + C       L G  +    LK       
Sbjct: 120 RNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTD 179

Query: 136 F-CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              G AL+  ++R      A++VFD + ER  V +  +I  + Q       + +F  M  
Sbjct: 180 VSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLD 239

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI--- 251
                  Y +S  + A  EL ++   + +H  A+  GL  +  V  GL+D Y K  +   
Sbjct: 240 DGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERS 299

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ-STVLELFHLLEMRGFAPDEYSFLAVL 310
           +  AR+VF + +   N ++W A+++GY Q G Q + V+ LF  +      P+  ++  +L
Sbjct: 300 MEHARKVF-KTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLL 358

Query: 311 TALCN 315
            A  N
Sbjct: 359 KACAN 363



 Score = 45.1 bits (105), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 11/178 (6%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           L +AA    +   R +H   + S  LD + +V   L+  Y K G V  ARRVFD+   V 
Sbjct: 47  LTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVR 106

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + ++W AM +  A+ G +   L L   +   G  P+ ++    L A   A    E  +  
Sbjct: 107 DLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFT----LCAAARACFPQELFRLA 162

Query: 327 ERMKVRYKLEPG-----LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             + + + L+ G     +     LI    R G L  A+R+   +  E  + VW  L++
Sbjct: 163 GGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGL-IERTSVVWTLLIT 219


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/555 (35%), Positives = 308/555 (55%), Gaps = 12/555 (2%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLS 86
           Q+D  + + LI  YS    L  + ++F+ IP  +IVSWT++I  +    N+  ++++F  
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKD 167

Query: 87  ML---RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           +L        +   +   L S+   C+ +    L   S+HS  +K         G+ L+ 
Sbjct: 168 LLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE-SIHSFVIKRGFDRGVSVGNTLLD 226

Query: 144 FYSRFRSPDNA--KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGST 200
            Y++      A  +K+FD+I ++D V Y +++  +AQ+    ++  VF  + ++  V   
Sbjct: 227 AYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFN 286

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
              +S  L A +   A+   + IH   +  GL+ +VIVGT +ID Y K G V  AR+ FD
Sbjct: 287 AITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFD 346

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
             +   N  +W AM+AGY   G  +  LELF  +   G  P+  +F++VL A  +AGL  
Sbjct: 347 R-MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHV 405

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           E  +W   MK R+ +EPGLEHY C++  +GRAG L+ A  +   M  +PD+ +W +LL+ 
Sbjct: 406 EGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAA 465

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
             IH   ++A     RL +++  +   Y++++++ +  GRW +V  VR +MK+R + K  
Sbjct: 466 CRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPP 525

Query: 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKR 500
           G S +E+ G+VHVFL GD  H + E IY  LAEL  +    GYV     + H+V + EK 
Sbjct: 526 GFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKE 585

Query: 501 EALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNR 560
             L  HSEKLA+AFG+++  P G T+ +VKNLR+C DCH   K IS++V+RE VVRD  R
Sbjct: 586 MTLRVHSEKLAIAFGIMNTVP-GSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKR 644

Query: 561 YHRFLNGSCTCGDLW 575
           +H F +G C+CGD W
Sbjct: 645 FHHFKDGGCSCGDYW 659



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 170/355 (47%), Gaps = 14/355 (3%)

Query: 55  LFN-HIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
           LFN ++   ++ SW ++I+  + S  S    L+      LS  P + +     K C+SL 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
             F  G   H  +         F  SAL+  YS     ++A+KVFDEI +RD+V + +MI
Sbjct: 91  DIFS-GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMI 149

Query: 174 VGFAQNSRLVDSLSVFADM--RSSDVGSTMYCVSGAL----RAAAELAAMEQCRVIHGHA 227
            G+  N   +D++S+F D+    +D    M+  S  L     A + + A      IH   
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGI--VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           +  G DR V VG  L+D Y K G   V+ AR++FD+ +   + +++N++M+ YAQ G  +
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD-KDRVSYNSIMSVYAQSGMSN 268

Query: 286 TVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              E+F  L++ +    +  +   VL A+ ++G A    K I    +R  LE  +   T 
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG-ALRIGKCIHDQVIRMGLEDDVIVGTS 327

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           +I    + GR+E A +    M    +   W A+++   +HG A  A ++   +ID
Sbjct: 328 IIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMID 381


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/593 (32%), Positives = 308/593 (51%), Gaps = 53/593 (8%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLS 86
           + +  +  +++  + K   +  + R F  I   ++  W  ++S +++      +LN+F  
Sbjct: 143 EGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRK 202

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LHDKPFCGSALVHFY 145
           M+        PN  T+AS    C +LS     G  +H   +K+  L      G++LV +Y
Sbjct: 203 MVLEGVK---PNSITIASAVSACTNLS-LLRHGREIHGYCIKVEELDSDLLVGNSLVDYY 258

Query: 146 SRFRSPDNAKK-------------------------------------------VFDEIR 162
           ++ RS + A++                                           VF E+ 
Sbjct: 259 AKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELS 318

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
            RDVV + ++I   AQ+ R V++L +  +M  S+V      +  AL A ++LAA+ Q + 
Sbjct: 319 TRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE 378

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH   +  GLD    +   LID YG+ G +  +RR+FD  +   + ++WN M++ Y   G
Sbjct: 379 IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDL-MPQRDLVSWNVMISVYGMHG 437

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                + LF      G  P+  +F  +L+A  ++GL  E  K+ + MK  Y ++P +E Y
Sbjct: 438 FGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQY 497

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
            C++  + RAG+  +       MPFEP+AAVW +LL    IH   D+A    + L ++ P
Sbjct: 498 ACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEP 557

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
                YV++AN+ S  GRW++ A++R +MK+R V K  G SWIEVK K+H F+ GD  H 
Sbjct: 558 QSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHP 617

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
             E I  K+  L  + + +GYVP  + +L +V + EK  +L  HSEK+ALAFGL+S    
Sbjct: 618 LMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTA- 676

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           G  LRI+KNLR+C DCH + K+IS+V +R+I++RD  R+H F++G C+CGD W
Sbjct: 677 GTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 163/393 (41%), Gaps = 52/393 (13%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSF 95
           L+  Y ++  +  + R+F+ +   N+ SWTA++  +    +   ++ +F  M+       
Sbjct: 51  LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV--- 107

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P+      +FK C+ L + +  G  ++   L +          +++  + +    D A+
Sbjct: 108 RPDHFVFPKVFKACSELKN-YRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIAR 166

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           + F+EI  +DV  +  M+ G+        +L+VF  M    V      ++ A+ A   L+
Sbjct: 167 RFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLS 226

Query: 216 AMEQCRVIHGHAV-VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            +   R IHG+ + V  LD +++VG  L+D Y K   V  ARR F   +   + ++WNAM
Sbjct: 227 LLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGM-IKQTDLVSWNAM 285

Query: 275 MA--GYAQQGDQSTVLELFH--------------------------------------LL 294
           +A  G+ Q GD    LE F                                       LL
Sbjct: 286 LAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLL 345

Query: 295 EMRGFAPDEYSFLAVLTAL--CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
                +  E + + +++AL  C+   A    K I +  +R  L+        LI   GR 
Sbjct: 346 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRC 405

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           G ++ + RI   MP + D   W  ++S   +HG
Sbjct: 406 GSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHG 437



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 125/286 (43%), Gaps = 3/286 (1%)

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           AS+ + C  L +  L G  +H+  +   +    F GS L+  Y +    ++A+++FD++ 
Sbjct: 14  ASILQKCRKLYNLRL-GFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           ER+V  + A++  +       +++ +F  M +  V    +      +A +EL      + 
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           ++ + +  G + N  V   ++D + K G +  ARR F+E +   +   WN M++GY  +G
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEE-IEFKDVFMWNIMVSGYTSKG 191

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
           +    L +F  + + G  P+  +  + ++A  N  L     +         +L+  L   
Sbjct: 192 EFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVG 251

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
             L+    +   +E A R    M  + D   W A+L+ +      D
Sbjct: 252 NSLVDYYAKCRSVEVARR-KFGMIKQTDLVSWNAMLAVTGFTQYGD 296


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/570 (34%), Positives = 308/570 (54%), Gaps = 47/570 (8%)

Query: 44  SKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSP-LSLNIFLSMLRHPTLSFLPNQ 99
           SK   ++Y+L+LF  +P+P+   +  L  A    S +P LSL  +  ML+H      PN 
Sbjct: 47  SKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQH---CVTPNA 103

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
            T  SL + C     A      LH+  LK       +  + L+H Y  F S D+A++VF 
Sbjct: 104 FTFPSLIRACKLEEEA----KQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFC 159

Query: 160 EIRERDVVCY--------------------------------GAMIVGFAQNSRLVDSLS 187
            + + +VV +                                 AMI  F + +R  ++ +
Sbjct: 160 TMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFA 219

Query: 188 VFADMR-SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
           +F  MR    +    +  +  L A   + A+EQ   IH +   +G+  +  + T +ID Y
Sbjct: 220 LFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMY 279

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APDEYS 305
            K G +  A  VF   L V    +WN M+ G+A  G     + LF  +E     APD  +
Sbjct: 280 CKCGCLDKAFHVFC-GLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSIT 338

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           F+ VLTA  ++GL  E   +   M   + ++P  EHY C++  + RAGRLE+A+++   M
Sbjct: 339 FVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEM 398

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           P  PDAAV  ALL    IHG  ++  ++G R+I+++P +   YVI+ N+ +  G+W++VA
Sbjct: 399 PMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVA 458

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
            VRK+M DR V+KE G S IE++G V+ F+AG R H   E IY K+ E++E    +G+VP
Sbjct: 459 GVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVP 518

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
             D +LH++ + E+   L+YHSEKLA+A+GL+    RG+TLR+ KNLR+C+DCH++ K I
Sbjct: 519 DTDGVLHDLVEEERENPLFYHSEKLAIAYGLLK-TKRGETLRVTKNLRVCKDCHQASKMI 577

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S+V + +I++RD +R+H F NG C+C D W
Sbjct: 578 SKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 120/280 (42%), Gaps = 12/280 (4%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIP-SPNIVSWTALISAHSNSPL 79
           AR +  + +D ++  + +L++ YS+  L+  + R+F  +P   N VSW A+I+       
Sbjct: 154 ARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNR 213

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
               F    R      +   R +A+   +  +   A   G+ +H    K  +       +
Sbjct: 214 FREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLAT 273

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD-VG 198
            ++  Y +    D A  VF  ++ + V  +  MI GFA + +  D++ +F +M     V 
Sbjct: 274 TIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVA 333

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAV-VSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                    L A A    +E+      + V V G+D        ++D   +AG + +A++
Sbjct: 334 PDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKK 393

Query: 258 VFDE-----NLSVLNSIAWNAMMAGYAQQGDQ--STVLEL 290
           V DE     + +VL ++     + G  + G++  + V+EL
Sbjct: 394 VIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIEL 433


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/569 (32%), Positives = 320/569 (56%), Gaps = 13/569 (2%)

Query: 16  TDPRIVHARALKS--SQADRSIYNNLI---TNYSKSNLLSYSLRLFNHIPSP-NIVSWTA 69
           T  R +HA +++   S +D  +  +LI    +      +SY+ ++F+ I  P N+  W  
Sbjct: 31  TKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNT 90

Query: 70  LISAHSNSPLSLNIFLSMLRHPTLSFL--PNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
           LI  ++    S++ F S+ R   +S L  P+  T   L K   +++   L G ++HS+ +
Sbjct: 91  LIRGYAEIGNSISAF-SLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRL-GETIHSVVI 148

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
           +       +  ++L+H Y+      +A KVFD++ E+D+V + ++I GFA+N +  ++L+
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           ++ +M S  +    + +   L A A++ A+   + +H + +  GL RN+     L+D Y 
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE-MRGFAPDEYSF 306
           + G V +A+ +FDE +   NS++W +++ G A  G     +ELF  +E   G  P E +F
Sbjct: 269 RCGRVEEAKTLFDEMVDK-NSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
           + +L A  + G+  E  ++  RM+  YK+EP +EH+ C++  + RAG+++ A     +MP
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP 387

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
            +P+  +WR LL    +HG +D+A     +++ + P     YV+++N+ +   RW +V +
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447

Query: 427 VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
           +RK M    V+K  G S +EV  +VH FL GD+ H +++ IY KL E+       GYVP 
Sbjct: 448 IRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQ 507

Query: 487 WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
              +  +V + EK  A+ YHSEK+A+AF L+S  P    + +VKNLR+C DCH + K +S
Sbjct: 508 ISNVYVDVEEEEKENAVVYHSEKIAIAFMLIS-TPERSPITVVKNLRVCADCHLAIKLVS 566

Query: 547 RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +V  REIVVRD +R+H F NGSC+C D W
Sbjct: 567 KVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 316/563 (56%), Gaps = 15/563 (2%)

Query: 19  RIVHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH   +K+    ++ + N L+  Y+K  +L  ++ +F+ +    +V+WT+LI+A++  
Sbjct: 18  RAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYARE 77

Query: 78  PLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            LS   + +F  M R       P+  T+ ++   CA  + +   G  +H+   +  +   
Sbjct: 78  GLSDEAIRLFHEMDRE---GVSPDIFTITTVLHACAC-NGSLENGKDVHNYIRENDMQSN 133

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-- 192
            F  +AL+  Y++  S ++A  VF E+  +D++ +  MI G+++NS   ++LS+F DM  
Sbjct: 134 IFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL 193

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
                G+T+ C+   L A A LA++++ + +HGH + +G   +  V   L+D Y K G+ 
Sbjct: 194 EMKPDGTTLACI---LPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVP 250

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR +FD  +   + I W  M+AGY   G  +  +  F+ +   G  PDE SF+++L A
Sbjct: 251 VLARLLFDM-IPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYA 309

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++GL  E  ++   M+    ++P LEHY C++  + R+G+L  A +   +MP EPDA 
Sbjct: 310 CSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDAT 369

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W ALLS   IH    +A K+ + + ++ P +   YV++AN  +   +W+EV ++R+ + 
Sbjct: 370 IWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIG 429

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            R ++K  G SWIEVK KVH+FLAG+  H + + I   L  L  + +  GY P     L 
Sbjct: 430 RRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALI 489

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           N    +K  AL  HSEKLA+AFG+++  P  +T+R+ KNLR+C DCHE  K+IS+ + RE
Sbjct: 490 NADSLQKETALCGHSEKLAMAFGILN-LPPARTIRVSKNLRVCGDCHEMAKFISKTLGRE 548

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IV+RD NR+H F +G C C   W
Sbjct: 549 IVLRDSNRFHHFKDGVCCCRGFW 571



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 150/337 (44%), Gaps = 12/337 (3%)

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           + S+ + CA+     L G ++H   +K  +H K    + L+  Y++    D A  VFD +
Sbjct: 1   MVSILQACANCGDVSL-GRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLM 59

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
             R VV + ++I  +A+     +++ +F +M    V   ++ ++  L A A   ++E  +
Sbjct: 60  SVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
            +H +   + +  N+ V   L+D Y K G + DA  VF E + V + I+WN M+ GY++ 
Sbjct: 120 DVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLE-MPVKDIISWNTMIGGYSKN 178

Query: 282 GDQSTVLELF--HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
              +  L LF   +LEM+   PD  +   +L A C +  + +  K +    +R       
Sbjct: 179 SLPNEALSLFGDMVLEMK---PDGTTLACILPA-CASLASLDRGKEVHGHILRNGFFSDQ 234

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RL 397
           +    L+    + G +    R+   M    D   W  +++   +HG  + A       R 
Sbjct: 235 QVANALVDMYVKCG-VPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQ 293

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
             I P D+ +++ +    S  G  DE      VM+D 
Sbjct: 294 AGIEP-DEVSFISILYACSHSGLLDEGWRFFNVMQDE 329


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 200/564 (35%), Positives = 302/564 (53%), Gaps = 12/564 (2%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNL-----LSYSLRLFNHIPSPNIVSWTALISAHS 75
           VH + +K     +     L   ++ + L     L+Y+  L +  P+ N   +  L+ A S
Sbjct: 12  VHGQVVKLGMGHKDASRKLSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFS 71

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +PL    F ++    ++   P+  T   L K C S S     G  LH+L  KL      
Sbjct: 72  QTPLPTPPFHALSLFLSMPSPPDNFTFPFLLK-CCSRSKLPPLGKQLHALLTKLGFAPDL 130

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           +  + L+H YS F     A+ +FD +  RDVV + +MI G   +   V+++++F  M   
Sbjct: 131 YIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQC 190

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD--RNVIVGTGLIDGYGKAGIVS 253
            V      V   LRA A+  A+   R +H +    G++      V T L+D Y K G ++
Sbjct: 191 GVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIA 250

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            AR+VFD+ +   +   W AM++G A  G     +++F  +E  G  PDE +  AVLTA 
Sbjct: 251 SARKVFDDVVH-RDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTAC 309

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            NAGL  E       ++ RY ++P ++H+ CL+  + RAGRL++AE    AMP EPD  +
Sbjct: 310 RNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVL 369

Query: 374 WRALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           WR L+    +HG AD A ++ K L   D+   D  +Y++ +NV +  G+W   AEVR++M
Sbjct: 370 WRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELM 429

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
             + + K  G S IEV G VH F+ GD  H   E+I+ +LAE++++  + GY P   E+L
Sbjct: 430 NKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVL 489

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
             + D EK   L +HSEKLALA+GL+     G T+RIVKNLR C DCHE  K IS++ +R
Sbjct: 490 LEMDDEEKAVQLLHHSEKLALAYGLIRIG-HGSTIRIVKNLRSCEDCHEFMKLISKIYKR 548

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           +I+VRD  R+H F NG C+C D W
Sbjct: 549 DIIVRDRIRFHHFKNGECSCKDYW 572


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 192/547 (35%), Positives = 297/547 (54%), Gaps = 12/547 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D  +   L+  Y+K   +  +  +F+ +P  N+VSW ++I     + L   ++ +F    
Sbjct: 234 DPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVF---- 289

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               LS  P+Q +++S+   CA L     FG  +H   +K  L    +  ++LV  Y + 
Sbjct: 290 -REVLSLGPDQVSISSVLSACAGLVE-LDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKC 347

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              ++A K+F    +RDVV +  MI+G  +      + + F  M    V       S   
Sbjct: 348 GLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLF 407

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A+A +AA+ Q  +IH H + +G  +N  + + L+  YGK G + DA +VF E     N 
Sbjct: 408 HASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKE-HNV 466

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           + W AM+  + Q G  +  ++LF  +   G  P+  +F++VL+A  + G   +  K+   
Sbjct: 467 VCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNS 526

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M   + ++PGLEHY C++  +GR GRLE+A R   +MPFEPD+ VW ALL     H   +
Sbjct: 527 MANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVE 586

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           M  ++ +RL  + P +   Y++++N+    G  +E  EVR++M    VRKE G SWI+VK
Sbjct: 587 MGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVK 646

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
            +  VF A DR H RT++IY  L +L E  +R GYV    +   N  +  + ++LW HSE
Sbjct: 647 NRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYV-AETQFATNSVEGSEEQSLWCHSE 705

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           KLALAFGL+   P G  +RI KNLR C DCH   K+ S + +REI+VRD+NR+HRF NGS
Sbjct: 706 KLALAFGLLV-LPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGS 764

Query: 569 CTCGDLW 575
           C+C D W
Sbjct: 765 CSCMDYW 771



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 221/499 (44%), Gaps = 49/499 (9%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP--NIVSWTALIS--AHS 75
           +H++ + ++  A  +  N L+  Y+K   + ++L LFN  P P  N+V+WT LI+  + S
Sbjct: 119 IHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRS 178

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF--GLSLHSLSLKLSLHD 133
           N P     F + +R  T    PN  T +++   CA   HA L   G  +H+L  K    +
Sbjct: 179 NKPFQALTFFNRMR--TTGIYPNHFTFSAILPACA---HAALLSEGQQIHALIHKHCFLN 233

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
            PF  +AL+  Y++  S   A+ VFDE+  R++V + +MIVGF +N     ++ VF ++ 
Sbjct: 234 DPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVL 293

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           S  +G     +S  L A A L  ++  + +HG  V  GL   V V   L+D Y K G+  
Sbjct: 294 S--LGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFE 351

Query: 254 DARRVF----DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           DA ++F    D ++     + WN M+ G  +  +       F  +   G  PDE S+ ++
Sbjct: 352 DATKLFCGGGDRDV-----VTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSL 406

Query: 310 LTALCNAGLAGESE-KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
             A  +A +A  ++   I    ++          + L++  G+ G + DA ++      E
Sbjct: 407 FHA--SASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETK-E 463

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
            +   W A+++    HG A+ A K+ + +++     +  Y+   +VLS      ++    
Sbjct: 464 HNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPE--YITFVSVLSACSHTGKI---- 517

Query: 429 KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP--- 485
                     + G  +      VH    G   +    D+  ++  L E C  +  +P   
Sbjct: 518 ----------DDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEP 567

Query: 486 ---VWDEMLHNVGDREKRE 501
              VW  +L   G     E
Sbjct: 568 DSLVWGALLGACGKHANVE 586


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 189/561 (33%), Positives = 312/561 (55%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           R + A A+K    ADR + ++LI  Y+    ++ +  LF+ +    +V W A+I+A+   
Sbjct: 139 RGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKN 198

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            N    + +F  ML    +    ++ TL S+   C  +  A L       +  K  + ++
Sbjct: 199 GNWMEVVEMFKGMLE---VGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNR 255

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +AL+  Y++      A+++FD ++ RDVV + AMI G+ Q  +  ++L++F++M+ 
Sbjct: 256 NLM-TALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQL 314

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           ++V      +   L A A L A+E  + +H +     L   +I+GT L+D Y K G + D
Sbjct: 315 AEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDD 374

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F E++ V NS  W A++ G A  G     LELF  +      P + +F+ VL A  
Sbjct: 375 AVEAF-ESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACS 433

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++ L  E  +  + M   Y ++P  EHY C++  +GRAG +++A +    MP EP+A +W
Sbjct: 434 HSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIW 493

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           RALLS  A+H   ++  +  K+++ +NP     Y++++N+ + VG+W   A +RK MKDR
Sbjct: 494 RALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDR 553

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            + K  G S IE+ G V  F A D  H + ++IY K+ E+++  +  GY+P   ++   V
Sbjct: 554 GIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEV 613

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + EK  ++ +HSEKLA+AFGL+   P G T+R+ KNLR+C DCH + K IS+V  REIV
Sbjct: 614 DEHEKEVSVSHHSEKLAIAFGLMKLDP-GATIRLSKNLRVCTDCHSATKLISKVYNREIV 672

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+H F +G+C+C D W
Sbjct: 673 VRDRNRFHHFKDGTCSCNDYW 693



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 194/411 (47%), Gaps = 21/411 (5%)

Query: 9   PQPQNTS--TDPRIV---HARALKSSQ---ADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60
           P P +    TDPR +   HA  +KS +   + +  ++ L    +   LL Y++ LF   P
Sbjct: 18  PAPPHAPLRTDPRYLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGP 77

Query: 61  SPNIVS--WTALISA--HSNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115
            P + +  +  L+ A  H+  P  +L++F+ ML     S  P+Q T+A   K+C+ +   
Sbjct: 78  RPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLD--VASVCPDQHTVACALKSCSRMC-T 134

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
              G  + + ++K  L    F  S+L+H Y+  R    A+ +FD + E  VV + A+I  
Sbjct: 135 LDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITA 194

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           + +N   ++ + +F  M    V      +   + A   +   +  + +  +    GL RN
Sbjct: 195 YMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRN 254

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
             + T LID Y K G +  ARR+FD  +   + +AW+AM++GY Q       L LF  ++
Sbjct: 255 RNLMTALIDMYAKCGELGKARRLFD-GMQSRDVVAWSAMISGYTQADQCREALALFSEMQ 313

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
           +    P++ + ++VL+A C    A E+ KW+     R +L   +   T L+    + G +
Sbjct: 314 LAEVEPNDVTMVSVLSA-CAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCI 372

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM--GKRLIDINPYD 404
           +DA     +MP + ++  W AL+   A +G+   A ++    R   I P D
Sbjct: 373 DDAVEAFESMPVK-NSWTWTALIKGMATNGRGREALELFSSMRKASIEPTD 422


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 314/562 (55%), Gaps = 13/562 (2%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R VHAR + +++   +++    L+T Y +   L  +  + + +P  ++VSWT +IS +S 
Sbjct: 30  RQVHARMI-TARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQ 88

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +     +L++F+ MLR      +PN+ TLA++  +C+    +   G  +HSL +K +   
Sbjct: 89  TERHVEALDLFIKMLR---AGCIPNEYTLATVLTSCSG-PQSIYQGKQVHSLLVKTNFES 144

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F GS+L+  Y++  +   A++VFD + ERDVV   A+I G+AQ     ++L +F  + 
Sbjct: 145 HMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLY 204

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           S  +       +  + A + LA+++  + +H   +   L   V +   LID Y K G + 
Sbjct: 205 SEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLL 264

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            +RRVFD N+   + ++WNAM+ GY + G    V+ LF  L  +   PD  + LAVL+  
Sbjct: 265 YSRRVFD-NMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGC 322

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            + GL  E     + +           HY C+I  +GR+GRLE A  +   MPFE   ++
Sbjct: 323 SHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSI 382

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W +LL    +H    +   + ++L+++ P +   YVI++N+ +  G W +V +VRK+M +
Sbjct: 383 WGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLE 442

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           + V KE G+SWI +   +H F + +R H   +DI  K+ E+  + +  G+VP    +LH+
Sbjct: 443 KTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHD 502

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V D +K   L  HSEKLA+ FGL++  P G T+R++KNLRIC DCH   K++S+V EREI
Sbjct: 503 VDDEQKERMLLGHSEKLAITFGLMN-TPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREI 561

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
            +RD NR+H   +G+CTCGD W
Sbjct: 562 SLRDKNRFHLLTHGNCTCGDYW 583



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 8/235 (3%)

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
            A+ A  E  A+ + R +H   + +     V +GT L+  Y + G + DAR V D  +  
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR-MPE 73

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            + ++W  M++GY+Q       L+LF  +   G  P+EY+   VLT+ C+   +    K 
Sbjct: 74  RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS-CSGPQSIYQGKQ 132

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +  + V+   E  +   + L+    ++  +++A R+   +P E D     A++S  A  G
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP-ERDVVSCTAIISGYAQKG 191

Query: 386 KADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
             + A  + ++L       +   +  +   LSG+   D   +V  ++    +RKE
Sbjct: 192 LDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALI----LRKE 242


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 295/543 (54%), Gaps = 17/543 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N +I+ Y++   LS + RLF+  P+ ++ +WTA++S +  + +   +   F  M     
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE 297

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           +S+  N      +      ++      +   ++S            + ++  Y +     
Sbjct: 298 VSY--NAMIAGYVQTKKMDIARELFESMPCRNIS----------SWNTMITGYGQIGDIA 345

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
            A+K FD + +RD V + A+I G+AQ+    ++L++F +++             AL   A
Sbjct: 346 QARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           ++AA+E  + IHG AV  G      VG  L+  Y K G + +A   F E +   + ++WN
Sbjct: 406 DIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTF-EGIEEKDVVSWN 464

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
            M+AGYA+ G     L +F  ++  G  PDE + + VL+A  + GL     ++   M   
Sbjct: 465 TMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD 524

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y + P  +HYTC+I  +GRAGRLE+A+ +   MPF+P AA W ALL  S IHG  ++  K
Sbjct: 525 YGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEK 584

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
             + +  + P +   YV+++N+ +  GRW +  ++R  M+D  V+K  G SW+EV+ K+H
Sbjct: 585 AAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIH 644

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
            F  GD  H   E IY  L EL  +    GYV +   +LH+V + EK   L YHSEKLA+
Sbjct: 645 TFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAV 704

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AFG+++  P G+ +R++KNLR+C DCH + K+IS++V R I++RD +R+H F  G C+CG
Sbjct: 705 AFGILT-IPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCG 763

Query: 573 DLW 575
           D W
Sbjct: 764 DYW 766



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 118/274 (43%), Gaps = 58/274 (21%)

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           +Y     L  +   GL     ++   M   Y + P  +HYTC+I  +GR  RLE+     
Sbjct: 764 DYWLQFFLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---- 819

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
                        ALL  S IHG  ++  K  +    + P +           SG+ +  
Sbjct: 820 -------------ALLGASRIHGNTELGEKAAQMFFKMGPQN-----------SGISK-- 853

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
                   M+D  V+K  G SW EV+ K+H F  G                L  E E +G
Sbjct: 854 --------MRDVGVQKVPGYSWFEVQNKIHTFSVG--------------LFLSRERENIG 891

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKN-LRICRDCHES 541
           ++   D  +    + EK   L Y SE LA A G+++  P G+  R++K  + +C DC  +
Sbjct: 892 FLEELDLKMRER-EEEKERTLKYLSENLAAALGILT-IPVGRPNRVMKKRVYVCEDCRSA 949

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            K++S++V R I +RD    HRF    C+CG+ W
Sbjct: 950 IKHMSKIVGRLITLRDS---HRFNESICSCGEYW 980



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 151/324 (46%), Gaps = 27/324 (8%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS--- 77
           AR L  S   R+I  +N +IT Y +   ++ + + F+ +P  + VSW A+I+ ++ S   
Sbjct: 316 ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHY 375

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +LN+F+  ++    S   N+ T      TCA ++ A   G  +H  ++K+      F 
Sbjct: 376 EEALNMFVE-IKQDGESL--NRATFGCALSTCADIA-ALELGKQIHGQAVKMGYGTGCFV 431

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  Y +  S D A   F+ I E+DVV +  M+ G+A++     +L+VF  M+++ V
Sbjct: 432 GNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGV 491

Query: 198 GSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                 + G L A +    +++     +      G+       T +ID  G+AG + +A+
Sbjct: 492 KPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQ 551

Query: 257 RVFDENLSVLNSIAWNAMMA-----GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
            +         + +W A++      G  + G+++   E+   +E     P       +L+
Sbjct: 552 DLIRNMPFQPGAASWGALLGASRIHGNTELGEKAA--EMVFKME-----PQNSGMYVLLS 604

Query: 312 ALCNAGLAGESEKWIERMKVRYKL 335
            L  A     S +W++  K+R K+
Sbjct: 605 NLYAA-----SGRWVDADKMRSKM 623



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 167/365 (45%), Gaps = 41/365 (11%)

Query: 59  IPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115
           +  P+I+ W   IS H    +   +L++F +M R  ++S+  N      L  +  +L+  
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSY--NAMISGYLRNSKFNLARN 101

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
               +    L          F  + ++  Y R     +A+++FD + E+DVV + +++ G
Sbjct: 102 LFDQMPERDL----------FSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSG 151

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           +AQN  + ++  VF +M   +  S     +G L A      +E+  ++      S  D +
Sbjct: 152 YAQNGYVDEAREVFDNMPEKNSISW----NGLLAAYVHNGRIEEACLL----FESKSDWD 203

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           +I    L+ G+ +   + DAR +FD+ + V ++I+WN M++GYAQ G  S    LF    
Sbjct: 204 LISWNCLMGGFVRKKKLGDARWLFDK-MPVRDAISWNTMISGYAQGGGLSQARRLFDESP 262

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
            R    D +++ A+++     G+  E++ + + M  + ++      Y  +I+   +  ++
Sbjct: 263 TR----DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKM 313

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS---AYVIVA 412
           + A  +  +MP   + + W  +++     G  D+A    ++  D+ P  D    A +I  
Sbjct: 314 DIARELFESMPCR-NISSWNTMITGYGQIG--DIAQ--ARKFFDMMPQRDCVSWAAIIAG 368

Query: 413 NVLSG 417
              SG
Sbjct: 369 YAQSG 373



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 164/378 (43%), Gaps = 36/378 (9%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR L     +R ++  N ++T Y ++  L  + RLF+ +P  ++VSW +L+S ++ +   
Sbjct: 99  ARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYV 158

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +  +F +M    ++S+      L + +     +  A L   S     L          
Sbjct: 159 DEAREVFDNMPEKNSISW----NGLLAAYVHNGRIEEACLLFESKSDWDL--------IS 206

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + L+  + R +   +A+ +FD++  RD + +  MI G+AQ   L  +  +F +  + DV
Sbjct: 207 WNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV 266

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +    VSG ++       +++ +           ++N +    +I GY +   +  AR 
Sbjct: 267 FTWTAMVSGYVQNGM----LDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARE 318

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F E++   N  +WN M+ GY Q GD +   + F ++  R    D  S+ A++     +G
Sbjct: 319 LF-ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR----DCVSWAAIIAGYAQSG 373

Query: 318 LAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI---AMAMPFEPDAAV 373
              E+   ++E  +    L      + C +S       LE  ++I   A+ M +     V
Sbjct: 374 HYEEALNMFVEIKQDGESLNRAT--FGCALSTCADIAALELGKQIHGQAVKMGYGTGCFV 431

Query: 374 WRALLSFSAIHGKADMAS 391
             ALL+     G  D A+
Sbjct: 432 GNALLAMYFKCGSIDEAN 449


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 302/552 (54%), Gaps = 18/552 (3%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--SPLSLNIFLSML 88
           +D  +   L+  Y++   +  + + F  +P  N VSWT++I+A +     L++  F +ML
Sbjct: 265 SDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLLAVETFHAML 324

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                  +P + TL +  + C  L  A L    + +++ ++ +       + LV  Y+R 
Sbjct: 325 LE---GVVPTRSTLFAALEGCEDLRVARL----VEAIAQEIGVVTDVAIVTDLVMAYARC 377

Query: 149 RSPDNAKKVFD--EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
              ++A +VF   E  E D     AMI  +AQ      +  ++       +         
Sbjct: 378 DGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYIT 437

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSG---LDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           AL A A LAA+ + R IH  A V+    LDR+V +G  ++  YG+ G + DAR  FD  +
Sbjct: 438 ALDACASLAALSEGRQIH--ACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFD-GM 494

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              + I+WNAM++  AQ G      +LF  +   GF  +  +FL +L+A  +AGL     
Sbjct: 495 PARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGC 554

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           +    M   + + P  EHY C++  +GR GRL DA  I  AMP  PDAA W AL+    I
Sbjct: 555 EHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRI 614

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           +G  +      +R++++     +AYV + N+ S  GRWD+ A VRK+M D  +RK  G S
Sbjct: 615 YGDTERGRFAAERVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVS 674

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
            IE++ KVH F+  DR H ++E IY +L  +M   ER GY  V  E+LH+V + +K + L
Sbjct: 675 SIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLL 734

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
            +HSEKLA+AFG++S  P+G TLR++KNLR+C DCH + K+IS+V  REIVVRDV R+H 
Sbjct: 735 RFHSEKLAIAFGMMS-TPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHH 793

Query: 564 FLNGSCTCGDLW 575
           F +G+C+CGD W
Sbjct: 794 FKDGACSCGDYW 805



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 165/359 (45%), Gaps = 19/359 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSML 88
           D  + ++L+  Y +   L  ++ +F+ I   +IV WT LISA+    +S  ++ +F  +L
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           +        +     S+   C+  S  FL  G  +H  +++  L  +    SALV  Y R
Sbjct: 121 QE---GIALDAIVFVSVLSACS--SEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGR 175

Query: 148 FRSPDNAKKVFDEI-RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
             S  +A  +F  + R  DVV + AMI   +QN    ++L +F  M    +   +     
Sbjct: 176 CGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVS 235

Query: 207 ALRAAAELAAMEQCRVIHGHAVV--SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
             +A +   ++   +V   HA +  +GL  +V+V T L++ Y + G +  AR+ F E + 
Sbjct: 236 VFKACSSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAE-MP 294

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             N+++W +M+A + Q G    V E FH + + G  P   +  A L    +  +A    +
Sbjct: 295 ERNAVSWTSMIAAFTQIGHLLAV-ETFHAMLLEGVVPTRSTLFAALEGCEDLRVA----R 349

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSA 382
            +E +     +   +   T L+ A  R    EDA R+  A    E DAA+  A+++  A
Sbjct: 350 LVEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYA 408



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 7/186 (3%)

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           R+  + + L+  Y + G +  A  VF   ++  + + W  +++ Y  +G  +  + LFH 
Sbjct: 60  RDGYLASSLVYMYLRCGSLESAIDVF-HKIAHKSIVLWTVLISAYVSRGHSAAAIALFHR 118

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGR 351
           +   G A D   F++VL+A C++     + + I R  V   L  GL+    + L+S  GR
Sbjct: 119 ILQEGIALDAIVFVSVLSA-CSSEEFLAAGRLIHRCAVEAGL--GLQEIVASALVSMYGR 175

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVI 410
            G L DA  +   +    D  +W A+++ ++ +G    A ++  R++ +  P D   +V 
Sbjct: 176 CGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVS 235

Query: 411 VANVLS 416
           V    S
Sbjct: 236 VFKACS 241


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 304/559 (54%), Gaps = 13/559 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
           +H+ A K+   +   +    I+ YSK   +     LF     P+IV++ A+I  +++   
Sbjct: 243 IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGE 302

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + LSL++F  ++       L   R  +S   +   +S   +   ++H   LK +      
Sbjct: 303 TELSLSLFKELM-------LSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHAS 355

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +AL   YS+    ++A+K+FDE  E+ +  + AMI G+ QN    D++S+F +M+ S+
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSE 415

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                  ++  L A A+L A+   + +H     +  + ++ V T LI  Y K G +++AR
Sbjct: 416 FSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEAR 475

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           R+FD  ++  N + WN M++GY   G     L +F+ +   G  P   +FL VL A  +A
Sbjct: 476 RLFDL-MTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHA 534

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E ++    M  RY  EP ++HY C++  +GRAG L+ A +   AM  EP ++VW  
Sbjct: 535 GLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWET 594

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    IH   ++A  + ++L +++P +   +V+++N+ S    + + A VR+  K R++
Sbjct: 595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKL 654

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            K  G + IE+    HVF +GD+ H + ++IY KL +L  +    GY P  +  LH+V +
Sbjct: 655 AKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEE 714

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            E+   +  HSE+LA+AFGL++  P G  +RI+KNLR+C DCH   K IS++ ER IVVR
Sbjct: 715 EERELMVKVHSERLAIAFGLIATEP-GTEIRIIKNLRVCLDCHTVTKLISKITERVIVVR 773

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F +G C+CGD W
Sbjct: 774 DANRFHHFKDGVCSCGDYW 792



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 8/271 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS--NSP-LSLNIFLSML 88
           D S+   L    S    + Y+  +F  +  P++  +  L+   S   SP  SL++F  + 
Sbjct: 51  DISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLR 110

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           +   L   PN  T A    + AS       G  +H  ++      +   GS +V  Y +F
Sbjct: 111 KSTDLK--PNSSTYAFAI-SAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKF 167

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGA 207
              ++A+KVFD + E+D + +  MI G+ +N   V+S+ VF D+   S        +   
Sbjct: 168 WRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDI 227

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A AEL  +     IH  A  +G   +  V TG I  Y K G +     +F E     +
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFRE-FRKPD 286

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            +A+NAM+ GY   G+    L LF  L + G
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSG 317


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 302/552 (54%), Gaps = 19/552 (3%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D +   +L++ YS S  L+ + +LF+ IP  ++V+WTAL S ++ S     ++++F  M+
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               +   P+   +  +   C  +      G  +     ++ +    F  + LV+ Y++ 
Sbjct: 205 E---MGVKPDSYFIVQVLSACVHVGD-LDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKC 260

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              + A+ VFD + E+D+V +  MI G+A NS   + + +F  M   ++    + + G L
Sbjct: 261 GKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFL 320

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDR-----NVIVGTGLIDGYGKAGIVSDARRVFDENL 263
            + A L A++      G   +S +DR     N+ +   LID Y K G ++    VF E +
Sbjct: 321 SSCASLGALDL-----GEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKE-M 374

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              + +  NA ++G A+ G       +F   E  G +PD  +FL +L    +AGL  +  
Sbjct: 375 KEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGL 434

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           ++   +   Y L+  +EHY C++   GRAG L+DA R+   MP  P+A VW ALLS   +
Sbjct: 435 RFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRL 494

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
                +A  + K LI + P++   YV ++N+ S  GRWDE AEVR +M  + ++K  G S
Sbjct: 495 VKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYS 554

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
           WIE++GKVH FLA D+ H  ++ IY KL +L  E   +G+VP  + +  +V + EK   L
Sbjct: 555 WIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVL 614

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
            YHSEKLA+A GL+S    G+ +R+VKNLR+C DCHE  K IS++  REIVVRD NR+H 
Sbjct: 615 GYHSEKLAVALGLIS-TDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHC 673

Query: 564 FLNGSCTCGDLW 575
           F NGSC+C D W
Sbjct: 674 FTNGSCSCNDYW 685



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 10/343 (2%)

Query: 51  YSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFK 107
           YS  LF+H   PNI  + +LI+   N+ L   +L++FLS+ +H       +  T   + K
Sbjct: 63  YSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKH---GLYLHGFTFPLVLK 119

Query: 108 TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167
            C   S   L G+ LHSL +K   +      ++L+  YS     ++A K+FDEI +R VV
Sbjct: 120 ACTRASSRKL-GIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVV 178

Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
            + A+  G+  + R  +++ +F  M    V    Y +   L A   +  ++    I  + 
Sbjct: 179 TWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYM 238

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
               + +N  V T L++ Y K G +  AR VFD  +   + + W+ M+ GYA        
Sbjct: 239 EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEK-DIVTWSTMIQGYASNSFPKEG 297

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           +ELF  +      PD++S +  L++  + G A +  +W   +  R++    L     LI 
Sbjct: 298 IELFLQMLQENLKPDQFSIVGFLSSCASLG-ALDLGEWGISLIDRHEFLTNLFMANALID 356

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
              + G +     +   M  E D  +  A +S  A +G   ++
Sbjct: 357 MYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLS 398



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 123/283 (43%), Gaps = 3/283 (1%)

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           +P+  +     KT  S++        +H   +   LH   F  + L+     FR    + 
Sbjct: 6   VPSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSY 65

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            +F   +  ++  Y ++I GF  N    ++L +F  +R   +    +     L+A    +
Sbjct: 66  LLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRAS 125

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           + +    +H   V  G + +V   T L+  Y  +G ++DA ++FDE +   + + W A+ 
Sbjct: 126 SRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDE-IPDRSVVTWTALF 184

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           +GY   G     ++LF  +   G  PD Y  + VL+A  + G   +S +WI +     ++
Sbjct: 185 SGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVG-DLDSGEWIVKYMEEMEM 243

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           +      T L++   + G++E A  +  +M  E D   W  ++
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMI 285



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 123/260 (47%), Gaps = 24/260 (9%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           Q +  +   L+  Y+K   +  +  +F+ +   +IV+W+ +I  ++++      + +FL 
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQ 303

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFL--FGLSL---HSLSLKLSLHDKPFCGSAL 141
           ML+    +  P+Q ++     +CASL    L  +G+SL   H     L      F  +AL
Sbjct: 304 MLQE---NLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNL------FMANAL 354

Query: 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR----SSDV 197
           +  Y++  +     +VF E++E+D+V   A I G A+N  +  S +VF        S D 
Sbjct: 355 IDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDG 414

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            + +  + G + A       +  R  +  + V  L R V     ++D +G+AG++ DA R
Sbjct: 415 STFLGLLCGCVHAG---LIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYR 471

Query: 258 VFDENLSVLNSIAWNAMMAG 277
           +  +     N+I W A+++G
Sbjct: 472 LICDMPMRPNAIVWGALLSG 491


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 295/543 (54%), Gaps = 17/543 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N +I+ Y++   LS + RLF+  P+ ++ +WTA++S +  + +   +   F  M     
Sbjct: 238 WNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE 297

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           +S+  N      +      ++      +   ++S            + ++  Y +     
Sbjct: 298 VSY--NAMIAGYVQTKKMDIARELFESMPCRNIS----------SWNTMITGYGQIGDIA 345

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
            A+K FD + +RD V + A+I G+AQ+    ++L++F +++             AL   A
Sbjct: 346 QARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           ++AA+E  + IHG AV  G      VG  L+  Y K G + +A   F E +   + ++WN
Sbjct: 406 DIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTF-EGIEEKDVVSWN 464

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
            M+AGYA+ G     L +F  ++  G  PDE + + VL+A  + GL     ++   M   
Sbjct: 465 TMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD 524

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y + P  +HYTC+I  +GRAGRLE+A+ +   MPF+P AA W ALL  S IHG  ++  K
Sbjct: 525 YGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEK 584

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
             + +  + P +   YV+++N+ +  GRW +  ++R  M+D  V+K  G SW+EV+ K+H
Sbjct: 585 AAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIH 644

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
            F  GD  H   E IY  L EL  +    GYV +   +LH+V + EK   L YHSEKLA+
Sbjct: 645 TFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAV 704

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AFG+++  P G+ +R++KNLR+C DCH + K+IS++V R I++RD +R+H F  G C+CG
Sbjct: 705 AFGILT-IPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCG 763

Query: 573 DLW 575
           D W
Sbjct: 764 DYW 766



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 151/324 (46%), Gaps = 27/324 (8%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS--- 77
           AR L  S   R+I  +N +IT Y +   ++ + + F+ +P  + VSW A+I+ ++ S   
Sbjct: 316 ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHY 375

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +LN+F+  ++    S   N+ T      TCA ++ A   G  +H  ++K+      F 
Sbjct: 376 EEALNMFVE-IKQDGESL--NRATFGCALSTCADIA-ALELGKQIHGQAVKMGYGTGCFV 431

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  Y +  S D A   F+ I E+DVV +  M+ G+A++     +L+VF  M+++ V
Sbjct: 432 GNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGV 491

Query: 198 GSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                 + G L A +    +++     +      G+       T +ID  G+AG + +A+
Sbjct: 492 KPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQ 551

Query: 257 RVFDENLSVLNSIAWNAMMA-----GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
            +         + +W A++      G  + G+++   E+   +E     P       +L+
Sbjct: 552 DLIRNMPFQPGAASWGALLGASRIHGNTELGEKAA--EMVFKME-----PQNSGMYVLLS 604

Query: 312 ALCNAGLAGESEKWIERMKVRYKL 335
            L  A     S +W++  K+R K+
Sbjct: 605 NLYAA-----SGRWVDADKMRSKM 623



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 167/365 (45%), Gaps = 41/365 (11%)

Query: 59  IPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115
           +  P+I+ W   IS H    +   +L++F +M R  ++S+  N      L  +  +L+  
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSY--NAMISGYLRNSKFNLARN 101

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
               +    L          F  + ++  Y R     +A+++FD + E+DVV + +++ G
Sbjct: 102 LFDQMPERDL----------FSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSG 151

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           +AQN  + ++  VF +M   +  S     +G L A      +E+  ++      S  D +
Sbjct: 152 YAQNGYVDEAREVFDNMPEKNSISW----NGLLAAYVHNGRIEEACLL----FESKSDWD 203

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           +I    L+ G+ +   + DAR +FD+ + V ++I+WN M++GYAQ G  S    LF    
Sbjct: 204 LISWNCLMGGFVRKKKLGDARWLFDK-MPVRDAISWNTMISGYAQGGGLSQARRLFDESP 262

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
            R    D +++ A+++     G+  E++ + + M  + ++      Y  +I+   +  ++
Sbjct: 263 TR----DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKM 313

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS---AYVIVA 412
           + A  +  +MP   + + W  +++     G  D+A    ++  D+ P  D    A +I  
Sbjct: 314 DIARELFESMPCR-NISSWNTMITGYGQIG--DIAQ--ARKFFDMMPQRDCVSWAAIIAG 368

Query: 413 NVLSG 417
              SG
Sbjct: 369 YAQSG 373



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 164/378 (43%), Gaps = 36/378 (9%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR L     +R ++  N ++T Y ++  L  + RLF+ +P  ++VSW +L+S ++ +   
Sbjct: 99  ARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYV 158

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +  +F +M    ++S+      L + +     +  A L   S     L          
Sbjct: 159 DEAREVFDNMPEKNSISW----NGLLAAYVHNGRIEEACLLFESKSDWDL--------IS 206

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + L+  + R +   +A+ +FD++  RD + +  MI G+AQ   L  +  +F +  + DV
Sbjct: 207 WNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV 266

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +    VSG ++       +++ +           ++N +    +I GY +   +  AR 
Sbjct: 267 FTWTAMVSGYVQNGM----LDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARE 318

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F E++   N  +WN M+ GY Q GD +   + F ++  R    D  S+ A++     +G
Sbjct: 319 LF-ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR----DCVSWAAIIAGYAQSG 373

Query: 318 LAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI---AMAMPFEPDAAV 373
              E+   ++E  +    L      + C +S       LE  ++I   A+ M +     V
Sbjct: 374 HYEEALNMFVEIKQDGESLNRAT--FGCALSTCADIAALELGKQIHGQAVKMGYGTGCFV 431

Query: 374 WRALLSFSAIHGKADMAS 391
             ALL+     G  D A+
Sbjct: 432 GNALLAMYFKCGSIDEAN 449


>gi|414876780|tpg|DAA53911.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 491

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 285/497 (57%), Gaps = 6/497 (1%)

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
           ++L +F  M    TLSF  +    ASL     +L      G  +H+  + L L  + F G
Sbjct: 1   MALQLFREM---QTLSFDRHTLPFASLLSVAGALPD-IKIGRQIHAQLILLGLTLEDFMG 56

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +AL+  YS+    D AK +F    ++  + + A+I G  QN +  ++L +F +MR + + 
Sbjct: 57  NALIDMYSKCGMLDAAKTIFANKSDKTAISWTALITGCVQNGQHEEALQLFCNMRRAGLS 116

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                 S  +++++ L  +   R +H +   SG   +V  G+ L+D Y K G + +A R 
Sbjct: 117 PDRATCSSIIKSSSSLGVIGIGRQLHAYLTTSGHMSSVFSGSALLDMYAKCGCLDEAIRT 176

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F+E +   NSI WNA+++ YAQ G     + +F  +   GF PD  +FL+VL A  + GL
Sbjct: 177 FNE-MPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGFCPDPVTFLSVLAACSHNGL 235

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           A E  K+ + M+    + P  EHY+C+I A+GRAG  +  +++   MPFE D  +W ++L
Sbjct: 236 AEECMKYFDLMRYYNSMSPWKEHYSCVIDALGRAGCFDKIQKVLDEMPFEADPVIWSSIL 295

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               I+G  D+A+   + L  + P D +AYVI++N+ +  G W+  A V+K+M+DR VRK
Sbjct: 296 HSCRIYGNQDLATVAAENLFTMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVRK 355

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
           E G SW+E+K K+++F + D  +   ++I  +L  L EE ++ GY P     LH V +++
Sbjct: 356 ESGNSWVEIKQKIYMFSSNDHTNPMIDEIKEELERLYEEMDKQGYEPDTSCALHMVDNKQ 415

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K E+L YHSE+LA+AF L++  P G  + ++KNL  C DCH + K IS++V R+I+VRD 
Sbjct: 416 KLESLKYHSERLAIAFALIN-TPPGTPITVMKNLSACLDCHAAIKMISKIVNRDIIVRDS 474

Query: 559 NRYHRFLNGSCTCGDLW 575
            R+H F +G C+CGD W
Sbjct: 475 RRFHHFKDGFCSCGDYW 491



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 14/255 (5%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTL 93
           N LI  YSK  +L  +  +F +      +SWTALI+    +     +L +F +M R   L
Sbjct: 57  NALIDMYSKCGMLDAAKTIFANKSDKTAISWTALITGCVQNGQHEEALQLFCNM-RRAGL 115

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
           S  P++ T +S+ K+ +SL      G  LH+           F GSAL+  Y++    D 
Sbjct: 116 S--PDRATCSSIIKSSSSLG-VIGIGRQLHAYLTTSGHMSSVFSGSALLDMYAKCGCLDE 172

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A + F+E+ E++ + + A+I  +AQ  +  +++ +F  M               L A + 
Sbjct: 173 AIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGFCPDPVTFLSVLAACSH 232

Query: 214 LAAMEQCR----VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
               E+C     ++  +  +S    +    + +ID  G+AG     ++V DE     + +
Sbjct: 233 NGLAEECMKYFDLMRYYNSMSPWKEHY---SCVIDALGRAGCFDKIQKVLDEMPFEADPV 289

Query: 270 AWNAMMAGYAQQGDQ 284
            W++++      G+Q
Sbjct: 290 IWSSILHSCRIYGNQ 304


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 178/533 (33%), Positives = 297/533 (55%), Gaps = 9/533 (1%)

Query: 46  SNLLSYSLRLFNHIPSPNIVSWTALISAHS--NSPLSLNIFLSMLRHPTLSFL-PNQRTL 102
           S  ++Y+ R+F+    PN+  W  +I  +S  +SP++    +++ R   L  + PN  T 
Sbjct: 54  SGHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITA---IALYRDMFLCGISPNSYTF 110

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
             + K C  L      G  LHS  +K+ L  +    + L+  Y+     D A  +FDE+ 
Sbjct: 111 GFVLKACCKLLR-LCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMP 169

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           E D   +  M+ G+AQN + V++L +F +M++ +V S  + ++  +    +L A++  + 
Sbjct: 170 EPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKW 229

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +H +    G+  +V++GT L+  Y K G + +A +VF + ++  +  AW+ M+AGYA  G
Sbjct: 230 VHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVF-QGMAERDVTAWSTMIAGYAIHG 288

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                L+LF  ++     P+  +F +VL+A  ++GL  +  +  E M   YK+ P ++HY
Sbjct: 289 HGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHY 348

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
            C++    RAG +  A +    MP EP+  +WR LL     HG  D+   + ++++ ++P
Sbjct: 349 GCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDP 408

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
                YV+V+NV + +GRW  V +VR +MKD+  +K+ G S IE+   VH F+ GD  H 
Sbjct: 409 SSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHP 468

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
             E IY  L ++  + +++G+V    ++LH++ + EK  AL  HSE+LA+A+GL+   P 
Sbjct: 469 EREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLH-TPN 527

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           G  +RIVKNLR+CRDCHE  K IS V  REI+VRD  R+H F    C+C D W
Sbjct: 528 GSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 110/260 (42%), Gaps = 18/260 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           +  + N LI  Y+    + Y+  +F+ +P P+  SW+ ++S ++ +     +L +F  M 
Sbjct: 141 ETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQ 200

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                S   +  TLAS+   C  L  A   G  +HS   K  +      G+ALV  YS+ 
Sbjct: 201 AENVSS---DAFTLASVVGVCGDLG-ALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKC 256

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
            S DNA KVF  + ERDV  +  MI G+A +     +L +F  M+ S         +  L
Sbjct: 257 GSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVL 316

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYGKAGIVSDARRVFDEN 262
            A +    +E+     GH +   +     +         ++D + +AG+V  A +     
Sbjct: 317 SACSHSGLVEK-----GHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTM 371

Query: 263 LSVLNSIAWNAMMAGYAQQG 282
               N + W  ++      G
Sbjct: 372 PIEPNVVLWRTLLGACKTHG 391


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 306/559 (54%), Gaps = 13/559 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
           +H+ A K+   +   +    I+ YSK   +  +  LF     P+IV++ A+I  +++   
Sbjct: 243 IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGE 302

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + LSL++F  ++       L   +  +S   +   +S   +   ++H  SLK +      
Sbjct: 303 TELSLSLFKELM-------LSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTS 355

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +AL   YS+    ++A+K+FDE  E+ +  + AMI G+ QN    D++S+F +M++S+
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSE 415

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                  ++  L A A+L A+   + +H     +  + ++ V T LI  Y K G +++AR
Sbjct: 416 FSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEAR 475

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           R+FD  +   N + WN M++GY   G     L +F  +   G AP   +FL VL A  +A
Sbjct: 476 RLFD-FMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHA 534

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E ++    M  RY  EP ++HY C++  +GRAG L+ A +   AMP +P  +VW  
Sbjct: 535 GLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWET 594

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    IH   ++A  + ++L +++P +   +V+++N+ S    + + A VR+  K R++
Sbjct: 595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKL 654

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            K  G + IE+    HVF +GD+ H + + I+ KL +L  +    GY P  +  LH+V +
Sbjct: 655 AKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEE 714

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            E+   +  HSE+LA+AFGL++  P G  +RI+KNLR+C DCH + K IS++ ER IVVR
Sbjct: 715 EERELMVKVHSERLAIAFGLIATEP-GTEIRIIKNLRVCLDCHTATKLISKITERVIVVR 773

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F +G C+CGD W
Sbjct: 774 DANRFHHFKDGVCSCGDYW 792



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 128/530 (24%), Positives = 208/530 (39%), Gaps = 71/530 (13%)

Query: 21  VHAR-ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS--NS 77
            HA+  L   + D S+   L    S    + Y+  +F  +  P++  +  L+   S   S
Sbjct: 39  THAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNES 98

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P S     + LR  T    PN  T A    + AS       G  +H  ++      +   
Sbjct: 99  PHSSLAVFAHLRKST-DLKPNSSTYAFAI-SAASGFRDDRAGCVIHGQAIVDGCDSELLL 156

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSD 196
           GS +V  Y +F   ++A+KVFD + E+D + +  MI G+ +N   V+S+ VF D+   S 
Sbjct: 157 GSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESC 216

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                  +   L A AEL  +     IH  A  +G   +  V TG I  Y K G +  A 
Sbjct: 217 TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMAS 276

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG------------------ 298
            +F E     + +A+NAM+ GY   G+    L LF  L + G                  
Sbjct: 277 TLFRE-FRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHL 335

Query: 299 ---FAPDEYS----FL---AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
              +A   YS    FL   +V TAL     +  +E    R       E  L  +  +IS 
Sbjct: 336 MLIYAIHGYSLKSNFLSHTSVSTALTTV-YSKLNEIESARKLFDESPEKSLPSWNAMISG 394

Query: 349 MGRAGRLEDAERIAMAM---PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI---NP 402
             + G  EDA  +   M    F P+      +LS  A  G    A  +GK + D+     
Sbjct: 395 YTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLG----ALSLGKWVHDLVRSTD 450

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
           ++ S YV  A ++    +   +AE R++     + K+   +W       +  ++G  +H 
Sbjct: 451 FESSIYVSTA-LIGMYAKCGSIAEARRLFD--FMPKKNEVTW-------NTMISGYGLHG 500

Query: 463 RTEDIYTKLAELMEE---------------CERLGYVPVWDEMLHNVGDR 497
             ++  T  +E++                 C   G V   DE+ +++  R
Sbjct: 501 HGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 303/559 (54%), Gaps = 11/559 (1%)

Query: 21  VHARALKSSQADRSI-YNNLITNYSKSNL--LSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +HAR LK+   +  +    L+ + + S    LSY+  +F+ I  P+  ++  +I AH++S
Sbjct: 7   LHARLLKTGHHNHPLALRRLLLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADS 66

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S ++     +       P+  T   + K CA L      GL LHSL  KL      + 
Sbjct: 67  SPSFSL-SLFSKMTMAGVSPDHFTFPFVLKACARLQT----GLDLHSLLFKLGFDSDVYV 121

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSD 196
            + L+HFY      D A K F+E+ ERD+V + +MI  FA+N    ++L++F  M+    
Sbjct: 122 QNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT 181

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      V   + A + L  +E  + I G    +GL+  V +GT L+D + + G + ++ 
Sbjct: 182 VKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESM 241

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RVFDE +   N + W A++ G A  G  +  L +F+ +   GF PD  +F  VL A  + 
Sbjct: 242 RVFDE-MGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHG 300

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E     E ++  Y +EP  EHY C++  +GRAG L +A +    MP  P++ +WR 
Sbjct: 301 GLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRT 360

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL     H   ++A K+ +++ +++ Y D  YV+++NV  GVGRW E A VR  M+++R+
Sbjct: 361 LLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRI 420

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            K+ G S I V   +H F+AGD  H + E I   L  +++  + +GY P    +L ++ +
Sbjct: 421 SKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEE 480

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK   L YHSEKLA+AF L+      +T+R++KNLRIC DCH   KY S V EREI++R
Sbjct: 481 EEKESTLGYHSEKLAVAFALLC-FKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIR 539

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F  GSC+C D W
Sbjct: 540 DRNRFHHFSKGSCSCRDYW 558


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 187/548 (34%), Positives = 300/548 (54%), Gaps = 19/548 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNS---PLSLNIFLSML 88
           YN +I+ Y        +L +   + S  I     ++ ++I A + +    L   +   +L
Sbjct: 254 YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R    SF  +  +L SL+  C     A        ++  K+   D     +AL+  Y   
Sbjct: 314 RREDFSFHFDN-SLVSLYYKCGKFDEA-------RAIFEKMPAKDL-VSWNALLSGYVSS 364

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
                AK +F E++E++++ +  MI G A+N    + L +F+ M+        Y  SGA+
Sbjct: 365 GHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAI 424

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           ++ A L A    +  H   +  G D ++  G  LI  Y K G+V +AR+VF   +  L+S
Sbjct: 425 KSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVF-RTMPCLDS 483

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WNA++A   Q G  +  ++++  +  +G  PD  + L VLTA  +AGL  +  K+ + 
Sbjct: 484 VSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDS 543

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M+  Y++ PG +HY  LI  + R+G+  DAE +  ++PF+P A +W ALLS   +HG  +
Sbjct: 544 METVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNME 603

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +      +L  + P  D  Y++++N+ +  G+W+EVA VRK+M+DR V+KE   SWIE++
Sbjct: 604 LGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEME 663

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV-GDREKREALWYHS 507
            +VH FL  D  H   E +Y  L +L +E  RLGYVP    +LH+V  D  K + L  HS
Sbjct: 664 TQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHS 723

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           EK+A+AFGL+   P G T+RI KNLR C DCH  F+++S VV+R+I++RD  R+H F NG
Sbjct: 724 EKIAVAFGLMK-LPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNG 782

Query: 568 SCTCGDLW 575
            C+CG+ W
Sbjct: 783 ECSCGNFW 790



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 107/476 (22%), Positives = 186/476 (39%), Gaps = 121/476 (25%)

Query: 19  RIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS----- 72
           R VH   +      R+ I N LI  Y KS+ L+Y+ +LF+ I  P+ ++ T ++S     
Sbjct: 34  RAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCAS 93

Query: 73  ------------------------------AHSNSPLS-LNIFLSMLRHPTLSFLPNQRT 101
                                         +H+N   S +N+F  M +H    F P+  T
Sbjct: 94  GDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKM-KHE--GFKPDNFT 150

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN----AKKV 157
            AS+    A ++      +  H+ +LK          +ALV  YS+  S  +    A+KV
Sbjct: 151 FASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKV 210

Query: 158 FDEIRERD--------------------------------VVCYGAMIVGFAQNSRLVDS 185
           FDEI E+D                                +V Y AMI G+       ++
Sbjct: 211 FDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEA 270

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV----------------- 228
           L +   M SS +    +     +RA A    ++  + +H + +                 
Sbjct: 271 LEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLY 330

Query: 229 --VSGLD-----------RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
                 D           ++++    L+ GY  +G + +A+ +F E +   N ++W  M+
Sbjct: 331 YKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE-MKEKNILSWMIMI 389

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSF------LAVLTALCNAGLAGESEKWIERM 329
           +G A+ G     L+LF  ++  GF P +Y+F       AVL A CN       +   + +
Sbjct: 390 SGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG-----QQYHAQLL 444

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           K+ +  +  L     LI+   + G +E+A ++   MP   D+  W AL++    HG
Sbjct: 445 KIGF--DSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHG 497



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 117/286 (40%), Gaps = 41/286 (14%)

Query: 154 AKKVFDE--IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           A+ VF++  +  RD V Y AMI GF+ N+    ++++F  M+        +  +  L   
Sbjct: 99  ARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGL 158

Query: 212 AELAAME-QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG----IVSDARRVFDENLSV- 265
           A +A  E QC   H  A+ SG      V   L+  Y K      ++  AR+VFDE L   
Sbjct: 159 ALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKD 218

Query: 266 ------------------------------LNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
                                         +  +A+NAM++GY  +G     LE+   + 
Sbjct: 219 ERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMV 278

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G   DE+++ +V+ A   AGL  +  K +    +R + +        L+S   + G+ 
Sbjct: 279 SSGIELDEFTYPSVIRACATAGLL-QLGKQVHAYVLR-REDFSFHFDNSLVSLYYKCGKF 336

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
           ++A  I   MP   D   W ALLS     G    A  + K + + N
Sbjct: 337 DEARAIFEKMP-AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 25/320 (7%)

Query: 23  ARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           ARA+  K    D   +N L++ Y  S  +  +  +F  +   NI+SW  +IS  + +   
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
              L +F  M R     F P     +   K+CA L  A+  G   H+  LK+        
Sbjct: 399 EEGLKLFSCMKRE---GFEPCDYAFSGAIKSCAVLG-AYCNGQQYHAQLLKIGFDSSLSA 454

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  Y++    + A++VF  +   D V + A+I    Q+    +++ V+ +M    +
Sbjct: 455 GNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGI 514

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHG-----HAVVSGLDRNVIVGTGLIDGYGKAGIV 252
                 +   L A +    ++Q R         + +  G D        LID   ++G  
Sbjct: 515 RPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHY----ARLIDLLCRSGKF 570

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           SDA  V +       +  W A+++G    G+    L +    ++ G  P+      +L+ 
Sbjct: 571 SDAESVIESLPFKPTAEIWEALLSGCRVHGNME--LGIIAADKLFGLIPEHDGTYMLLSN 628

Query: 313 LCNAGLAGESEKWIERMKVR 332
           +  A     + +W E  +VR
Sbjct: 629 MHAA-----TGQWEEVARVR 643



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 22/207 (10%)

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDEN-LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           I  T ++ GY  +G ++ AR VF++  + + +++ +NAM+ G++   D  + + LF  ++
Sbjct: 81  IARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMK 140

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM------ 349
             GF PD ++F +VL  L    L  + EK   +      L+ G  + T + +A+      
Sbjct: 141 HEGFKPDNFTFASVLAGL---ALVADDEKQCVQFHAA-ALKSGAGYITSVSNALVSVYSK 196

Query: 350 -GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
              +  L  + R       E D   W  +++    +G  D+  ++      +   DD+  
Sbjct: 197 CASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEEL------LEGMDDNMK 250

Query: 409 VIVAN-VLSGV---GRWDEVAEVRKVM 431
           ++  N ++SG    G + E  E+ + M
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRM 277


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 190/564 (33%), Positives = 315/564 (55%), Gaps = 13/564 (2%)

Query: 17  DPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           + R VHAR + +++   +++    L+T Y +   L  +  + + +P  ++VSWT +IS +
Sbjct: 60  EGRQVHARMI-TARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGY 118

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           S +     +L++F+ MLR      +PN+ TLA++  +C+    +   G  +HSL +K + 
Sbjct: 119 SQTERHVEALDLFIKMLR---AGCIPNEYTLATVLTSCSG-PQSIYQGKQVHSLLVKTNF 174

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F GS+L+  Y++  +   A++VFD + ERDVV   A+I G+AQ     ++L +F  
Sbjct: 175 ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQ 234

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           + S  +       +  + A + LA+++  + +H   +   L   V +   LID Y K G 
Sbjct: 235 LYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGK 294

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  +RRVFD N+   + ++WNAM+ GY + G    V+ LF  L  +   PD  + LAVL+
Sbjct: 295 LLYSRRVFD-NMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLS 352

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
              + GL  E     + +           HY C+I  +GR+GRLE A  +   MPFE   
Sbjct: 353 GCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTP 412

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           ++W +LL    +H    +   + ++L+++ P +   YVI++N+ +  G W +V +VRK+M
Sbjct: 413 SIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLM 472

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
            ++ V KE G+SWI +   +H F + +R H   +DI  K+ E+  + +  G+VP    +L
Sbjct: 473 LEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVL 532

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H+V D +K   L  HSEKLA+ FGL++  P G T+R++KNLRIC DCH   K++S+V ER
Sbjct: 533 HDVDDEQKERMLLGHSEKLAITFGLMN-TPPGLTIRVMKNLRICVDCHNFAKFVSKVYER 591

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI +RD NR+H   +G+CTCGD W
Sbjct: 592 EISLRDKNRFHLLTHGNCTCGDYW 615



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 115/266 (43%), Gaps = 8/266 (3%)

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           G A     V  L   + M      +  +    A+ A  E  A+ + R +H   + +    
Sbjct: 16  GLALQRCFVAPLRAASGMALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRP 75

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
            V +GT L+  Y + G + DAR V D  +   + ++W  M++GY+Q       L+LF  +
Sbjct: 76  AVFLGTRLVTMYVRCGALDDARNVLDR-MPERSVVSWTTMISGYSQTERHVEALDLFIKM 134

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
              G  P+EY+   VLT+ C+   +    K +  + V+   E  +   + L+    ++  
Sbjct: 135 LRAGCIPNEYTLATVLTS-CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSEN 193

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVAN 413
           +++A R+   +P E D     A++S  A  G  + A  + ++L       +   +  +  
Sbjct: 194 IQEARRVFDTLP-ERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVT 252

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKE 439
            LSG+   D   +V  ++    +RKE
Sbjct: 253 ALSGLASLDYGKQVHALI----LRKE 274


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 299/547 (54%), Gaps = 9/547 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D  +  + +  YSK   +  +  +F  +P+ N+VSW A+IS    + L   S ++F  ++
Sbjct: 265 DILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLV 324

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R    S   +  T+ SL + C S + +   G  LH  +++ S        +A+V  YS+ 
Sbjct: 325 RS---SGGFDLTTIVSLLQGC-SQTASLATGKILHGCAIR-SFESNLILSTAIVDLYSKC 379

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
            S   A  VF+ +++R+V+ + AM+VG AQN    D+L +FA M+   + +        +
Sbjct: 380 GSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLV 439

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            + A L ++++ R IHGH    G   +++  T L+D Y K G ++ A R+F       + 
Sbjct: 440 HSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDV 499

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           + WN+M+ GY   G     + ++H +   G  P++ +FL++L+A  ++ L  +       
Sbjct: 500 VLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNS 559

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M+  + + P  +HY CL+  + RAGR E+A+ +   MPF+P  AV  ALLS    H   +
Sbjct: 560 MERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNIN 619

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +  +   +L+ ++  +   Y++++N+ +   RWD+V  +R +M++R ++K  G S +E  
Sbjct: 620 LGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETG 679

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
             VH F AGD  H   E+IY  L  L    E  GYVP    +L +V +  K   LW HSE
Sbjct: 680 NWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSE 739

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           +LA+AFGL++  P G  +RI KNLR+C DCH   KYIS++V+REI+VRD NR+H F NG 
Sbjct: 740 RLAIAFGLLT-TPAGSLIRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGE 798

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 799 CSCGDYW 805



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 186/383 (48%), Gaps = 10/383 (2%)

Query: 20  IVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS-- 77
           I+ +   K  + +R + +++I+   K   +  + R+F+ +P+ ++V W ++I  +  +  
Sbjct: 152 IISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGC 211

Query: 78  -PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             ++  +F  M  H +    P+  T+ SL + C  + +  L G  +H   L L L +   
Sbjct: 212 FDVAFQLFFEM--HGS-GIKPSPITMTSLIQACGGIGNLKL-GKCMHGYVLGLGLGNDIL 267

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++ V  YS+    ++A+ VF ++  R++V + AMI G  +N  + +S  +F  +  S 
Sbjct: 268 VLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSS 327

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
            G  +  +   L+  ++ A++   +++HG A+ S  + N+I+ T ++D Y K G +  A 
Sbjct: 328 GGFDLTTIVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQAT 386

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF+  +   N I W AM+ G AQ G     L LF  ++  G A +  +F++++ +  + 
Sbjct: 387 FVFNR-MKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHL 445

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G + +  + I     R      + + T L+    + G++  AERI        D  +W +
Sbjct: 446 G-SLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNS 504

Query: 377 LLSFSAIHGKADMASKMGKRLID 399
           +++   +HG    A  +  ++I+
Sbjct: 505 MITGYGMHGHGYQAVGIYHKMIE 527



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 175/377 (46%), Gaps = 12/377 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            HA+ + +S   D+ +   L+  YS    L  +  +F+    P  +   A++  +  S  
Sbjct: 51  THAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGR 110

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F  ++R   L       T A   K CAS S  +  G+ + S +++  +    F
Sbjct: 111 YRETLELF-GLMRSRNLEVDSCSCTFA--LKACAS-SLDYEMGMEIISSAVEKGMEKNRF 166

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GS+++ F  +F     A++VFD +  +DVVC+ ++I G+ Q      +  +F +M  S 
Sbjct: 167 VGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG 226

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +  +   ++  ++A   +  ++  + +HG+ +  GL  +++V T  +D Y K G +  AR
Sbjct: 227 IKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESAR 286

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF + +   N ++WNAM++G  + G      +LFH L       D  + +++L   C+ 
Sbjct: 287 WVFYK-MPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQG-CSQ 344

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
             +  + K +    +R   E  L   T ++    + G L+ A  +   M  + +   W A
Sbjct: 345 TASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMK-DRNVITWTA 402

Query: 377 LLSFSAIHGKADMASKM 393
           +L   A +G A+ A ++
Sbjct: 403 MLVGLAQNGHAEDALRL 419



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 125/282 (44%), Gaps = 11/282 (3%)

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
           S H+  +  SL    F  + LV  YS  RS + A+ VFD+  +   +   AM+ G+ Q+ 
Sbjct: 50  STHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSG 109

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
           R  ++L +F  MRS ++       + AL+A A     E    I   AV  G+++N  VG+
Sbjct: 110 RYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGS 169

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            +I    K G + +A+RVFD  +   + + WN+++ GY Q G      +LF  +   G  
Sbjct: 170 SMISFLVKFGKIGEAQRVFD-GMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH----YTCLISAMGRAGRLE 356
           P   +  +++ A       G     + +    Y L  GL +     T  +    + G +E
Sbjct: 229 PSPITMTSLIQA-----CGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIE 283

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
            A  +   MP   +   W A++S    +G    +  +  RL+
Sbjct: 284 SARWVFYKMP-TRNLVSWNAMISGCVRNGLVGESFDLFHRLV 324



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 85/178 (47%), Gaps = 8/178 (4%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL---ISAHS 75
           +I+H  A++S +++  +   ++  YSK   L  +  +FN +   N+++WTA+   ++ + 
Sbjct: 352 KILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNG 411

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           ++  +L +F  M          N  T  SL  +CA L  +   G S+H    +L      
Sbjct: 412 HAEDALRLFAQMQEE---GIAANSVTFVSLVHSCAHLG-SLKRGRSIHGHLFRLGFAFDI 467

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              +ALV  Y++    + A+++F      +DVV + +MI G+  +     ++ ++  M
Sbjct: 468 VNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKM 525


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 204/585 (34%), Positives = 321/585 (54%), Gaps = 27/585 (4%)

Query: 5   LNQQPQPQNTSTDPRI--VHARALKSSQADRSIYNNLITN-----YSKSNLLSYSLRLFN 57
           LN  P   + S  P +  +H  +LK       +YN L+ N     Y+K   LSY+ R+F+
Sbjct: 149 LNAVPVCFHESFLPSLKELHCYSLKQ----EFVYNELVANAFVASYAKCGSLSYAQRVFH 204

Query: 58  HIPSPNIVSWTALISAH--SNSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSH 114
            I S  + SW ALI  H  SN P LSL+  L M        LP+  T+ SL   C+ L  
Sbjct: 205 GIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM---KISGLLPDSFTVCSLLSACSKLK- 260

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
           +   G  +H   ++  L    F   +++  Y         + +FD + ++ +V +  +I 
Sbjct: 261 SLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVIT 320

Query: 175 GFAQNSRLVDSLSVFADMRSSDV---GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           G+ QN     +L VF  M    +   G +M  V GA    + L ++   R  H +A+   
Sbjct: 321 GYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA---CSLLPSLRLGREAHAYALKHL 377

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           L+ +  +   LID Y K G ++ + +VF+  L   ++ +WNAM+ GY   G     ++LF
Sbjct: 378 LEDDAFIACSLIDMYAKNGSITQSSKVFN-GLKEKSTASWNAMIMGYGIHGLAKEAIKLF 436

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             ++  G  PD+ +FL VLTA  ++GL  E  +++++MK  + L+P L+HY C+I  +GR
Sbjct: 437 EEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGR 496

Query: 352 AGRLEDAERI-AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           AG+L+ A R+ A  M  E D  +W++LLS   IH   +M  K+  +L ++ P     YV+
Sbjct: 497 AGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVL 556

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
           ++N+ +G+G+W++V +VR+ M +  +RK+ G SWIE+  KV  F+ G+R  +  E+I + 
Sbjct: 557 LSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSL 616

Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
            + L  +  ++GY P    + H++ + EK E L  HSEKLAL +GL+     G T+R+ K
Sbjct: 617 WSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIK-TSEGTTIRVYK 675

Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           NLRIC DCH + K IS+V+EREIVVRD  R+H F NG C+CGD W
Sbjct: 676 NLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 153/343 (44%), Gaps = 12/343 (3%)

Query: 63  NIVSWTALISAHSNSPLSLNIFL----SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           N VSW ++I   S++  S   FL     M  +   +F+P+  TL ++   CA      L 
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL- 60

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H  ++KL L  +    +AL+  YS+     NA+ +F     ++VV +  M+ GF+ 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 179 NSRLVDSLSVFADMRSS--DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
                 +  V   M +   DV +    +  A+      + +   + +H +++      N 
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           +V    +  Y K G +S A+RVF    S  +NS  WNA++ G+AQ  D    L+    ++
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS--WNALIGGHAQSNDPRLSLDAHLQMK 238

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
           + G  PD ++  ++L+A C+   +    K +    +R  LE  L  Y  ++S     G L
Sbjct: 239 ISGLLPDSFTVCSLLSA-CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGEL 297

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
              + +  AM  +     W  +++    +G  D A  + ++++
Sbjct: 298 CTVQALFDAME-DKSLVSWNTVITGYLQNGFPDRALGVFRQMV 339



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 168/383 (43%), Gaps = 21/383 (5%)

Query: 21  VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSN 76
           VH  A+K       + NN L+  YSK   ++ +  +F    + N+VSW  ++   SA  +
Sbjct: 64  VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD 123

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS-LHSLSLKLSLHDKP 135
           +  + ++   ML         ++ T+ +    C     +FL  L  LH  SLK       
Sbjct: 124 THGTFDVLRQMLAGGE-DVKADEVTILNAVPVC--FHESFLPSLKELHCYSLKQEFVYNE 180

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +A V  Y++  S   A++VF  IR + V  + A+I G AQ++    SL     M+ S
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +    + V   L A ++L ++   + +HG  + + L+R++ V   ++  Y   G +   
Sbjct: 241 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 300

Query: 256 RRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA- 312
           + +FD  E+ S+   ++WN ++ GY Q G     L +F  + + G      S + V  A 
Sbjct: 301 QALFDAMEDKSL---VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 357

Query: 313 --LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
             L +  L  E+  +     +++ LE        LI    + G +  + ++   +  E  
Sbjct: 358 SLLPSLRLGREAHAY----ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKS 412

Query: 371 AAVWRALLSFSAIHGKADMASKM 393
            A W A++    IHG A  A K+
Sbjct: 413 TASWNAMIMGYGIHGLAKEAIKL 435


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 207/559 (37%), Positives = 313/559 (55%), Gaps = 28/559 (5%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA---HSNSPLSLNIFLSMLR 89
           S+ N  +T YSK  LL  ++ +F  +    + VSW ++I A   H     +L ++  M+ 
Sbjct: 174 SVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIF 233

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                F  +  TLAS+     SL H  + G   H   +K   H     GS L+ FYS+  
Sbjct: 234 K---GFKIDMFTLASVLNALTSLDH-LIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCG 289

Query: 150 SPD---NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADM-----RSSDVGST 200
             D   +++KVF EI   D+V +  MI G++ N  L + ++  F  M     R  D   +
Sbjct: 290 GCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDC--S 347

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIVSDARRVF 259
             CV+ A    + L++  QC+ IHG A+ S +  N I V   LI  Y K+G + DAR VF
Sbjct: 348 FVCVTSA---CSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVF 404

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D  +  LN++++N M+ GYAQ G  +  L L+  +   G AP++ +F+AVL+A  + G  
Sbjct: 405 DR-MPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKV 463

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E +++   MK  +K+EP  EHY+C+I  +GRAG+LE+AER   AMP++P +  W ALL 
Sbjct: 464 DEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLG 523

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
               H    +A +    L+ + P   + YV++AN+ +   +W+E+A VRK M+ +R+RK+
Sbjct: 524 ACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKK 583

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV--PVWDEMLHNVGDR 497
            G SWIEVK K HVF+A D  H    ++   L E+M++ +++GYV    W  +  +    
Sbjct: 584 PGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGE 643

Query: 498 EKREA-LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
              E  L +HSEKLA+AFGL+S    G+ L +VKNLRIC DCH + K++S V  REI+VR
Sbjct: 644 GDEEMRLGHHSEKLAVAFGLMS-TRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVR 702

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F +G C+CGD W
Sbjct: 703 DNLRFHCFKDGKCSCGDYW 721



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 201/426 (47%), Gaps = 19/426 (4%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+ +ARA   S  + ++  YN ++  Y+K + +  + +LF+ IP P+ VS+  LIS +++
Sbjct: 58  RLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYAD 117

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +  +    +   R   L F  +  TL+ L   C            LH  S+         
Sbjct: 118 ARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLI---KQLHCFSVSGGFDSYSS 174

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             +A V +YS+      A  VF  + E RD V + +MIV + Q+     +L+++ +M   
Sbjct: 175 VNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFK 234

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS-- 253
                M+ ++  L A   L  +   R  HG  + +G  +N  VG+GLID Y K G     
Sbjct: 235 GFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGM 294

Query: 254 -DARRVFDENLSVLNSIAWNAMMAGYAQQGDQS-TVLELFHLLEMRGFAPDEYSFLAVLT 311
            D+ +VF E LS  + + WN M++GY+   + S   ++ F  ++  G  PD+ SF+ V +
Sbjct: 295 YDSEKVFQEILSP-DLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS 353

Query: 312 ALCNAGLAGESE-KWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           A  N  L+  S+ K I  + ++  +    +     LIS   ++G L+DA  +   MP E 
Sbjct: 354 ACSN--LSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP-EL 410

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEV 427
           +A  +  ++   A HG    A  + +R++D  I P +   +V V +  +  G+ DE  E 
Sbjct: 411 NAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAP-NKITFVAVLSACAHCGKVDEGQEY 469

Query: 428 RKVMKD 433
              MK+
Sbjct: 470 FNTMKE 475



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 150/341 (43%), Gaps = 23/341 (6%)

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
           ++L N     +L+  C  LS+A     S    ++        F  + +V  Y++      
Sbjct: 43  TYLSNH--FVNLYSKCGRLSYARAAFYSTEEPNV--------FSYNVIVKAYAKDSKIHI 92

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+++FDEI + D V Y  +I G+A       ++ +F  MR        + +SG + A  +
Sbjct: 93  ARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCD 152

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
              ++  + +H  +V  G D    V    +  Y K G++ +A  VF     + + ++WN+
Sbjct: 153 --RVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNS 210

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG-LAGESEKWIERMKVR 332
           M+  Y Q  + +  L L+  +  +GF  D ++  +VL AL +   L G  +   + +K  
Sbjct: 211 MIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAG 270

Query: 333 Y----KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS-FSAIHGKA 387
           +     +  GL  +    S  G    + D+E++   +   PD  VW  ++S +S     +
Sbjct: 271 FHQNSHVGSGLIDF---YSKCGGCDGMYDSEKVFQEI-LSPDLVVWNTMISGYSMNEELS 326

Query: 388 DMASKMGKRLIDINPY-DDSAYVIVANVLSGVGRWDEVAEV 427
           + A K  +++  I    DD ++V V +  S +    +  ++
Sbjct: 327 EEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQI 367


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 204/585 (34%), Positives = 321/585 (54%), Gaps = 27/585 (4%)

Query: 5   LNQQPQPQNTSTDPRI--VHARALKSSQADRSIYNNLITN-----YSKSNLLSYSLRLFN 57
           LN  P   + S  P +  +H  +LK       +YN L+ N     Y+K   LSY+ R+F+
Sbjct: 399 LNAVPVCFHESFLPSLKELHCYSLKQ----EFVYNELVANAFVASYAKCGSLSYAQRVFH 454

Query: 58  HIPSPNIVSWTALISAH--SNSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSH 114
            I S  + SW ALI  H  SN P LSL+  L M        LP+  T+ SL   C+ L  
Sbjct: 455 GIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM---KISGLLPDSFTVCSLLSACSKLK- 510

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
           +   G  +H   ++  L    F   +++  Y         + +FD + ++ +V +  +I 
Sbjct: 511 SLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVIT 570

Query: 175 GFAQNSRLVDSLSVFADMRSSDV---GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           G+ QN     +L VF  M    +   G +M  V GA    + L ++   R  H +A+   
Sbjct: 571 GYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA---CSLLPSLRLGREAHAYALKHL 627

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           L+ +  +   LID Y K G ++ + +VF+  L   ++ +WNAM+ GY   G     ++LF
Sbjct: 628 LEDDAFIACSLIDMYAKNGSITQSSKVFN-GLKEKSTASWNAMIMGYGIHGLAKEAIKLF 686

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             ++  G  PD+ +FL VLTA  ++GL  E  +++++MK  + L+P L+HY C+I  +GR
Sbjct: 687 EEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGR 746

Query: 352 AGRLEDAERI-AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           AG+L+ A R+ A  M  E D  +W++LLS   IH   +M  K+  +L ++ P     YV+
Sbjct: 747 AGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVL 806

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
           ++N+ +G+G+W++V +VR+ M +  +RK+ G SWIE+  KV  F+ G+R  +  E+I + 
Sbjct: 807 LSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSL 866

Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
            + L  +  ++GY P    + H++ + EK E L  HSEKLAL +GL+     G T+R+ K
Sbjct: 867 WSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIK-TSEGTTIRVYK 925

Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           NLRIC DCH + K IS+V+EREIVVRD  R+H F NG C+CGD W
Sbjct: 926 NLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D  +   +IT Y+       S  +F+ + S N+  W A+IS++S + L    L  F+ M+
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 178

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
              T   LP+  T   + K CA +S   + GL++H L +K  L +  F G+ALV FY   
Sbjct: 179 --STTDLLPDHFTYPCVIKACAGMSDVGI-GLAVHGLVVKTGLVEDVFVGNALVSFYGTH 235

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               +A ++FD + ER++V + +MI  F+ N    +S  +  +M   +           L
Sbjct: 236 GFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATL 295

Query: 209 RAAAELAAMEQ----CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
                + A E+     + +HG AV   LD+ +++   L+D Y K G +++A+ +F  N +
Sbjct: 296 VTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMN-N 354

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELF 291
             N ++WN M+ G++ +GD     ++ 
Sbjct: 355 NKNVVSWNTMVGGFSAEGDTHGTFDVL 381



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 176/386 (45%), Gaps = 13/386 (3%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   +K+    D  + N L++ Y     ++ +L+LF+ +P  N+VSW ++I   S++  
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268

Query: 80  SLNIFL----SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           S   FL     M  +   +F+P+  TL ++   CA      L G  +H  ++KL L  + 
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL-GKGVHGWAVKLRLDKEL 327

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +AL+  YS+     NA+ +F     ++VV +  M+ GF+       +  V   M + 
Sbjct: 328 VLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAG 387

Query: 196 --DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             DV +    +  A+      + +   + +H +++      N +V    +  Y K G +S
Sbjct: 388 GEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLS 447

Query: 254 DARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            A+RVF    S  +NS  WNA++ G+AQ  D    L+    +++ G  PD ++  ++L+A
Sbjct: 448 YAQRVFHGIRSKTVNS--WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 505

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            C+   +    K +    +R  LE  L  Y  ++S     G L   + +  AM  +    
Sbjct: 506 -CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAME-DKSLV 563

Query: 373 VWRALLSFSAIHGKADMASKMGKRLI 398
            W  +++    +G  D A  + ++++
Sbjct: 564 SWNTVITGYLQNGFPDRALGVFRQMV 589



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 168/383 (43%), Gaps = 21/383 (5%)

Query: 21  VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSN 76
           VH  A+K       + NN L+  YSK   ++ +  +F    + N+VSW  ++   SA  +
Sbjct: 314 VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD 373

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS-LHSLSLKLSLHDKP 135
           +  + ++   ML         ++ T+ +    C     +FL  L  LH  SLK       
Sbjct: 374 THGTFDVLRQMLAGGE-DVKADEVTILNAVPVC--FHESFLPSLKELHCYSLKQEFVYNE 430

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +A V  Y++  S   A++VF  IR + V  + A+I G AQ++    SL     M+ S
Sbjct: 431 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 490

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +    + V   L A ++L ++   + +HG  + + L+R++ V   ++  Y   G +   
Sbjct: 491 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 550

Query: 256 RRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA- 312
           + +FD  E+ S+   ++WN ++ GY Q G     L +F  + + G      S + V  A 
Sbjct: 551 QALFDAMEDKSL---VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 607

Query: 313 --LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
             L +  L  E+  +     +++ LE        LI    + G +  + ++   +  E  
Sbjct: 608 SLLPSLRLGREAHAY----ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKS 662

Query: 371 AAVWRALLSFSAIHGKADMASKM 393
            A W A++    IHG A  A K+
Sbjct: 663 TASWNAMIMGYGIHGLAKEAIKL 685



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 9/182 (4%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDR---NVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           L+A+ +   +E  R IH   +VSG  R   + ++ T +I  Y   G   D+R VFD  L 
Sbjct: 91  LQASGKRKDIEMGRKIH--QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA-LR 147

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
             N   WNA+++ Y++      VLE F  ++      PD +++  V+ A       G   
Sbjct: 148 SKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 207

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
             +  + V+  L   +     L+S  G  G + DA ++   MP E +   W +++   + 
Sbjct: 208 A-VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMP-ERNLVSWNSMIRVFSD 265

Query: 384 HG 385
           +G
Sbjct: 266 NG 267


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 203/583 (34%), Positives = 311/583 (53%), Gaps = 20/583 (3%)

Query: 10  QPQNTSTDPRIVH-----------ARALKSS--QADRSIYNNLITNYSKSNL-LSYSLRL 55
           +P +T    RI+H           A AL SS    D   YN L+    +S   L+ +  L
Sbjct: 56  RPPSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARAL 115

Query: 56  FNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112
           F+ +P  +  SW+A++SAH        +L I+  MLR P  S   N+ T +S     A+ 
Sbjct: 116 FDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAA-ATA 174

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
           +     G  LH   ++  +       SAL   Y++F   D+A+ VFD +  RDVV + AM
Sbjct: 175 ARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAM 234

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           +  +    R  +   +F  M  S +    +  +G LRA AE  + +  + +HG    S  
Sbjct: 235 LDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRT 294

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
             +   G+ L+  Y K G +  A RVF   +   + ++W AM++GYAQ G     L  F 
Sbjct: 295 GDSCFAGSALVHMYSKYGDMGTAMRVF-RGMPKPDLVSWTAMISGYAQNGQPDEALHCFD 353

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
           +L   GF PD  +F+ VL+A  +AGL  +       +K +Y +E   +HY C+I  + R+
Sbjct: 354 MLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRS 413

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412
           G  E AE +   MP +P+  +W +LL    IH    +A    + L +I P + + YV +A
Sbjct: 414 GLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLA 473

Query: 413 NVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLA 472
           N+ + VG +DEV  +R+ M+ R + K    SWIEV  +VHVFL GD+ H + E+IY  L 
Sbjct: 474 NIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALLK 533

Query: 473 ELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNL 532
           +L  +    GYV     +LH+V D +K++ + YHSE+LA+AFG+++  P+G  +++ KNL
Sbjct: 534 KLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIA-TPKGSPIKVFKNL 592

Query: 533 RICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           RIC DCH + K IS++V+REI+VRD NR+H F NGSC+C D W
Sbjct: 593 RICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 179/563 (31%), Positives = 319/563 (56%), Gaps = 10/563 (1%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           + +  H + ++   Q D ++ N LI  YSK   +  + ++F+ +   ++VSW  +I  ++
Sbjct: 81  EAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYT 140

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            + +   +L+IF  M R+    F  ++ T++S+   C +   A L    LH LS+K SL 
Sbjct: 141 RNRMESEALDIFWEM-RNEGFKF--SEFTISSVLSACGANCDA-LECKKLHCLSMKTSLD 196

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              + G+AL+  Y++    ++A +VF+ ++++  V + +M+ G+ Q+    ++L ++   
Sbjct: 197 LNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRA 256

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           +   +    + +S  + A + LAA+ + + +H     SG   NV V +  +D Y K G +
Sbjct: 257 QRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSL 316

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            ++  +F E +   N   WN +++G+A+      V+ LF  ++  G  P+E +F ++L+ 
Sbjct: 317 RESYIIFSE-VQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSV 375

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL  E  ++ + M+  Y L P + HY+C++  +GRAG L +A  +  ++PFEP A+
Sbjct: 376 CGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTAS 435

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W +LL+   +    ++A    K+L ++ P +   +V+++N+ +   +W+E+A+ RK+++
Sbjct: 436 IWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLR 495

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           D  V+K  G+SWI++K KVH+F  G+  H R  +I T L  L+ E  + GY P  +  LH
Sbjct: 496 DCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELH 555

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V   +K E L  HSEKLAL FGL+   P G T+RI+KNLRIC DCHE  K  S    R 
Sbjct: 556 DVEIGKKEELLMQHSEKLALVFGLMC-LPEGSTVRIMKNLRICVDCHEFMKAASMATRRF 614

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+H F +G C+CG+ W
Sbjct: 615 IIVRDANRFHHFSDGHCSCGEFW 637



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 3/172 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L+  A   A+ + +  HG  +   L  +V +   LI+ Y K G V  AR+VFD  L   +
Sbjct: 70  LQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLE-RS 128

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++WN M+  Y +   +S  L++F  +   GF   E++  +VL+A C A       K + 
Sbjct: 129 LVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSA-CGANCDALECKKLH 187

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            + ++  L+  L   T L+    + G + DA ++  +M  +  +  W ++++
Sbjct: 188 CLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQ-DKSSVTWSSMVA 238


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 189/546 (34%), Positives = 291/546 (53%), Gaps = 36/546 (6%)

Query: 63  NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
           N+VSW  +IS  + S   L+  L           P+  +++S+      L    L G+ +
Sbjct: 174 NLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMP-LMGIQI 232

Query: 123 HSLSLKLSLHDKPFCGSALVHFY-------------------------------SRFRSP 151
           H   +K  L    F  SAL+  Y                               SR    
Sbjct: 233 HCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLV 292

Query: 152 DNAKKVFDEIRERD--VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           DNA +VF + +  D  VV + +MI   +QN + +++L +F +M+   V      +   L 
Sbjct: 293 DNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLP 352

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A   +AA+   +  H  ++ +G+  +V VG+ LID Y K G +  +R  FD  +   N +
Sbjct: 353 ACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDM-MPNRNLV 411

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +WN++MAGYA  G     + +F L++  G  PD  SF  VL+A    GL  E   + + M
Sbjct: 412 SWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSM 471

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
              + +E  +EHY+C+++ +GR+GRLE+A  +   MPFEPD+ VW ALLS   +H + D+
Sbjct: 472 SRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDL 531

Query: 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG 449
                KR+ ++ P +   Y++++N+ +    W EV  VR +M+ R ++K  G SWIE+K 
Sbjct: 532 GEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKN 591

Query: 450 KVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEK 509
           KVH+ LAGD  H +   I  KLA+L  E ++ GYVP  D +L +V +++K + L  HSEK
Sbjct: 592 KVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEK 651

Query: 510 LALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSC 569
           LA+  GL++  P G  L+++KNLRICRDCH   K+IS   +REI VRD NR+H+F  G C
Sbjct: 652 LAVVLGLLNTKP-GFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVC 710

Query: 570 TCGDLW 575
           +CGD W
Sbjct: 711 SCGDYW 716



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 149/376 (39%), Gaps = 77/376 (20%)

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
           + +F  ML   T   +P+ R L ++ KTCA+LS A   G  +H  +L   L       S+
Sbjct: 59  IRVFSYML---TQGIVPDSRVLPTVIKTCAALS-ALQTGKQMHCFALVSGLGLDSVVLSS 114

Query: 141 LVHFYSRFRSPDNAKKVFDEIR-----------------------------------ERD 165
           L+H Y +F    +A+ VFD++                                    E +
Sbjct: 115 LLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELN 174

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           +V +  MI GF ++   +D++ +F +M    +      VS  L A  +L        IH 
Sbjct: 175 LVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHC 234

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV-------------------- 265
           + +  GL  +  V + LID YGK    S+   VF+E   V                    
Sbjct: 235 YVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDN 294

Query: 266 ------------LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
                       LN ++W +M+A  +Q G     LELF  +++ G  P+  +   +L A 
Sbjct: 295 ALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPAC 354

Query: 314 CN--AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
            N  A L G++        +R  +   +   + LI    + GR+  A R+   M    + 
Sbjct: 355 GNIAALLHGKAAHCFS---LRNGIFNDVYVGSALIDMYAKCGRML-ASRLCFDMMPNRNL 410

Query: 372 AVWRALLSFSAIHGKA 387
             W +L++  A+HGK 
Sbjct: 411 VSWNSLMAGYAMHGKT 426



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 115/292 (39%), Gaps = 72/292 (24%)

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           F++ +     + VF+ M +  +      +   ++  A L+A++  + +H  A+VSGL  +
Sbjct: 49  FSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLD 108

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDE---------------------------------N 262
            +V + L+  Y +   + DAR VFD+                                 +
Sbjct: 109 SVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRD 168

Query: 263 LSV-LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
           L V LN ++WN M++G+ + G     + +F  + + G  PD  S  +VL A+      G+
Sbjct: 169 LGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAV------GD 222

Query: 322 SEKWIERMKVR-YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
            +  +  +++  Y ++ GL                             PD  V  AL+  
Sbjct: 223 LDMPLMGIQIHCYVIKQGL----------------------------GPDKFVVSALID- 253

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
             ++GK   AS+M     +++  D  A   +   LS  G  D   EV K  K
Sbjct: 254 --MYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFK 303


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 321/572 (56%), Gaps = 12/572 (2%)

Query: 9   PQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSW 67
           PQ  + ST   ++H   +K   + D  + N LI  Y+K   L  + + F  +   ++VSW
Sbjct: 327 PQLGDIST-AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSW 385

Query: 68  TALISAH--SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL 125
            ++I+A+  ++ P++ + F   ++     F P+  TL SL    A  S       S+H  
Sbjct: 386 NSIIAAYEQNDDPVTAHGFFVKMQ--LNGFQPDLLTLVSLASIVAQ-SRDCKNSRSVHGF 442

Query: 126 SLKLS-LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
            ++   L +    G+A+V  Y++    D+A KVF+ I  +DV+ +  +I G+AQN    +
Sbjct: 443 IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASE 502

Query: 185 SLSVFADMRS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           ++ V+  M    ++          L A A + A++Q   IHG  + + L  +V V T LI
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLI 562

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           D YGK G + DA  +F + +   +S+ WNA+++ +   G     L+LF  +   G  PD 
Sbjct: 563 DVYGKCGRLVDAMSLFYQ-VPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDH 621

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            +F+++L+A  ++G   E  KW  R+   Y ++P L+HY C++  +GRAG LE A     
Sbjct: 622 VTFVSLLSACSHSGFV-EEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIK 680

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            MP +PDA++W ALL    IHG  ++      RL +++  +   YV+++N+ + VG+W+ 
Sbjct: 681 DMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEG 740

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
           V +VR + ++R ++K  G S IEV  KV VF  G++ H + ++IY +L  L  + + LGY
Sbjct: 741 VDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGY 800

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           +P +  +L +V + EK   L  HSE+LA+AFG++S  P+   +RI KNLR+C DCH + K
Sbjct: 801 IPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK-SPIRIFKNLRVCGDCHNATK 859

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +ISR+ +REIVVRD NR+H F +G C+CGD W
Sbjct: 860 FISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 169/366 (46%), Gaps = 11/366 (3%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           I   L+  Y+    +S S   F+ IP  ++ +W ++ISA+ ++     ++  F  +L   
Sbjct: 153 ISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVS 212

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            +   P+  T   + K C +L    + G  +H  + KL      F  ++L+H YSRF   
Sbjct: 213 EIR--PDFYTFPPVLKACGTL----VDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFT 266

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A+ +FD++  RD+  + AMI G  QN     +L V  +MR   +      V   L   
Sbjct: 267 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVC 326

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
            +L  +    +IH + +  GL+ ++ V   LI+ Y K G + DAR+ F + + + + ++W
Sbjct: 327 PQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF-QQMFITDVVSW 385

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N+++A Y Q  D  T    F  +++ GF PD  + +++ + +  +     S      +  
Sbjct: 386 NSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMR 445

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           R  L   +     ++    + G L+ A ++   +P + D   W  L++  A +G A  A 
Sbjct: 446 RGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLITGYAQNGLASEAI 504

Query: 392 KMGKRL 397
           ++ K +
Sbjct: 505 EVYKMM 510



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 139/339 (41%), Gaps = 45/339 (13%)

Query: 78  PLSLNIFLSMLR-----HPTLS------FLPNQRTLASLFKTCAS--------------- 111
           P S N+ L+  R      PTL       FLP +R    LF    S               
Sbjct: 60  PFSTNLTLASARWRHILAPTLKSRYTSKFLPPRRRPIQLFSAARSSPQFSSYGLGNQNEE 119

Query: 112 LSHAFLFGLS--------LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           +   FLF  S        LH+L +        F  + LV+ Y+       ++  FD+I +
Sbjct: 120 IDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQ 179

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFAD-MRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +DV  + +MI  +  N    +++  F   +  S++    Y     L+A   L      R 
Sbjct: 180 KDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRK 236

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH  A   G   NV V   LI  Y + G    AR +FD+ +   +  +WNAM++G  Q G
Sbjct: 237 IHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDD-MPFRDMGSWNAMISGLIQNG 295

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE--SEKWIERMKVRYKLEPGLE 340
           + +  L++   + + G    + +F+ V++ L      G+  +   I    +++ LE  L 
Sbjct: 296 NAAQALDVLDEMRLEGI---KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLF 352

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
               LI+   + G LEDA R A    F  D   W ++++
Sbjct: 353 VSNALINMYAKFGNLEDA-RKAFQQMFITDVVSWNSIIA 390


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 305/563 (54%), Gaps = 18/563 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H+  +K+    D  +   L+  YSK+  L+ + ++F+ IP  N+VSWTA+I  +  S  
Sbjct: 124 LHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGC 183

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL----SHAFLFGLSLHSLSLKLSLH 132
              +L +F  +L    +   P+  TL  +   C+ +    S  ++ G    S S+     
Sbjct: 184 FGEALGLFRGLLE---MGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSV----- 235

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F  ++LV  Y++  S + A++VFD + E+DVVC+ A+I G+A N    ++L VF +M
Sbjct: 236 GNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEM 295

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           +  +V    Y + G   A + L A+E      G         N ++GT LID Y K G V
Sbjct: 296 QRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSV 355

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           + A+ VF + +   + + +NA+++G A  G       +F  +   G  PD  +F+ +L  
Sbjct: 356 AQAKEVF-KGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCG 414

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  +  ++   M   + + P +EHY C++    RAG L +A+ +  +MP E ++ 
Sbjct: 415 CTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSI 474

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALL    +H    +A  + K+LI++ P++   YV+++N+ S   RWDE  ++R  + 
Sbjct: 475 VWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLN 534

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            + ++K  G SW+EV G VH FL GD  H  +  IY KL  L ++    GY P  + +L 
Sbjct: 535 QKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLF 594

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V + EK   L  HSEKLA+AF L+S   +   +R+VKNLR+C DCHE+ K +S+V  RE
Sbjct: 595 DVEEEEKEYFLGCHSEKLAVAFALISTGAK-DVIRVVKNLRVCGDCHEAIKLVSKVTGRE 653

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+H F  GSC+C D W
Sbjct: 654 IIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 173/378 (45%), Gaps = 9/378 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH-SNSPL--SLNIFLSML 88
           D  + N L+ +        Y+  +F   P PNI  +  LI    SN     +++++ SM 
Sbjct: 34  DTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMR 93

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           +H    F P+  T   + K C  L H F  GLSLHSL +K       F  + LV  YS+ 
Sbjct: 94  QH---GFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKN 150

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               +A+KVFDEI E++VV + A+I G+ ++    ++L +F  +    +    + +   L
Sbjct: 151 GFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRIL 210

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A + +  +   R I G+   SG   NV V T L+D Y K G + +ARRVFD  +   + 
Sbjct: 211 YACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFD-GMVEKDV 269

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           + W+A++ GYA  G     L++F  ++     PD Y+ + V +A    G A E   W   
Sbjct: 270 VCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLG-ALELGNWARG 328

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           +    +        T LI    + G +  A+ +   M    D  V+ A++S  A+ G   
Sbjct: 329 LMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMR-RKDCVVFNAVISGLAMCGHVG 387

Query: 389 MASKMGKRLIDINPYDDS 406
            A  +  +++ +    D 
Sbjct: 388 AAFGVFGQMVKVGMQPDG 405



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 129/286 (45%), Gaps = 15/286 (5%)

Query: 110 ASLSHAFLFGL-------SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           + L   F +GL         H L L+L LH   +  + L+     F +   A  VF +  
Sbjct: 3   SELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTP 62

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
             ++  Y  +I G   N    D++SV+A MR        +     L+A   L       +
Sbjct: 63  HPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGL 122

Query: 223 -IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
            +H   + +G D +V V TGL+  Y K G ++DAR+VFDE +   N ++W A++ GY + 
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDE-IPEKNVVSWTAIICGYIES 181

Query: 282 GDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCNAG-LAGESEKWIERMKVRYKLEPGL 339
           G     L LF  LLEM G  PD ++ + +L A    G LA  S +WI+           +
Sbjct: 182 GCFGEALGLFRGLLEM-GLRPDSFTLVRILYACSRVGDLA--SGRWIDGYMRESGSVGNV 238

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
              T L+    + G +E+A R+   M  E D   W AL+   A +G
Sbjct: 239 FVATSLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALIQGYASNG 283


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 190/584 (32%), Positives = 314/584 (53%), Gaps = 41/584 (7%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
           ++S  D   +  +I+  +K  LL  + RL    P  N+V+WT LIS +S    +  +++ 
Sbjct: 165 EASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDC 224

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL--SLKLSLHDKPF----- 136
           F SML   +    P++ T+  +   C  L     FG SLH L    ++ + DK       
Sbjct: 225 FNSML---SDGIAPDEVTVIGMLSACGQLKD-LNFGCSLHMLVGDKRMLMSDKLVVALID 280

Query: 137 ----CG---------------------SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
               CG                     +A++  Y +    D A+ +FD++ + DV+ + +
Sbjct: 281 MYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNS 340

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           +I G+    RL ++L +F  MR   +G+  + + G L A+A L A+ Q R +H       
Sbjct: 341 LITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRL 400

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           ++R+V +GT L+D Y K G V +A   F + +SV +   W+AM+ G A  G     LE F
Sbjct: 401 VERDVYLGTALLDMYMKCGRVEEAMVAF-KQMSVRDVHTWSAMIGGLAFNGMGKAALEHF 459

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             ++  GF  +  +++AVLTA  ++ L  E   + + M++ + + P +EHY C+I  +GR
Sbjct: 460 FWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGR 519

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411
           +G L++A  +   MP +P+A +W ++LS   +H   D+A      L+ + P +D+ YV +
Sbjct: 520 SGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQM 579

Query: 412 ANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKL 471
            N+     +W++ +++R++M+ R V+K  G S I V G+VH F+ GDR H +  +I   +
Sbjct: 580 YNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMM 639

Query: 472 AELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKN 531
            E+    +  GY P+  ++  +V + EK +AL  HSEKLA+AFGLVS AP    + I+KN
Sbjct: 640 EEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAP-NLPVHIIKN 698

Query: 532 LRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           LR+C DCH + K ISR+  REI+VRD +R+H F  G C+C D W
Sbjct: 699 LRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 140/343 (40%), Gaps = 41/343 (11%)

Query: 35  IYNNLITNYSKSNLLS--YSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPT 92
           + N+L +  S S+ L   Y+L LF+ +P    +  TAL +    S       +   R   
Sbjct: 37  LLNSLTSCISPSDPLHLRYALSLFDRMPCSTFLFDTALRACFRASSGPDRPIILYRRMHG 96

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK-PFCGSALVHFYSRFRSP 151
           +   P+  T   LFK CA      L G  LH+   +  L    P   S ++H Y+    P
Sbjct: 97  VDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLP 156

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA- 210
            +A++ FDE   +DVV +  +I G A+   L D+  + A     +V +    +SG  RA 
Sbjct: 157 GDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAG 216

Query: 211 -AAELA-----------AMEQCRVIHGHAVVS-------GLDRNVIVG-----------T 240
            AAE             A ++  VI   +          G   +++VG            
Sbjct: 217 RAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVV 276

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            LID Y K G    AR VFD          WNAM+ GY + G       LF  +E     
Sbjct: 277 ALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDH--- 333

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
            D  +F +++T   + G   E+     +M+ R+ L  G +++T
Sbjct: 334 -DVITFNSLITGYIHGGRLREALLLFTKMR-RHGL--GADNFT 372


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 191/571 (33%), Positives = 310/571 (54%), Gaps = 13/571 (2%)

Query: 11  PQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           P+N      +  + +  S + D  +   LIT Y++      + ++F  +   N+++W+A+
Sbjct: 124 PENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAI 183

Query: 71  ISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS-LHSLS 126
           I+A   H +   +L  F  M +      LPN+ T  SL     + S   L  LS +H L 
Sbjct: 184 ITAFADHGHCGEALRYFRMMQQE---GILPNRVTFISLLNGFTTPSG--LEELSRIHLLI 238

Query: 127 LKLSLHDKPFCGSALVHFYSRFRSP--DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
            +  L D     +ALV+ Y R  +   D A+ +  E+ E+ +  +  +I G+  + R  +
Sbjct: 239 TEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSRE 298

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L  +  ++   +          L A     ++ + ++IH +AV  GLD +VIV   L +
Sbjct: 299 ALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTN 358

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G + +ARR+FD ++ + ++++WN M+  YAQ G+   VL+L   +E  G   +  
Sbjct: 359 MYSKCGSMENARRIFD-SMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGI 417

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F++VL++  +AGL  E  ++   +     +E   EHY CL+  +GRAG+L++AE+    
Sbjct: 418 TFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISK 477

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           MP EP+   W +LL    +H   D      ++L++++P + SA V+++N+ S  G W   
Sbjct: 478 MPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNA 537

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
           A++R+ M  RRV+K  G S I+VK KVH F   D  H R  +IY K+ EL       GYV
Sbjct: 538 AKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYV 597

Query: 485 PVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKY 544
           P    +LH+V + +K   L YHSEKLA+AFGL+S  P   +L I KNLR+C DCH + K+
Sbjct: 598 PDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLIS-TPEKSSLHIFKNLRVCEDCHTATKF 656

Query: 545 ISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IS++  REIVVRD +R+H F +GSC+C D W
Sbjct: 657 ISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 177/396 (44%), Gaps = 17/396 (4%)

Query: 13  NTSTDP------RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV 65
           N+  DP      + +H+   +S  + D  +   L+  Y+K   L+ + ++F+ +P  ++ 
Sbjct: 18  NSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVG 77

Query: 66  SWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA---SLSHAFLFGLSL 122
           +W ++ISA+S S  S   F    R        ++ T  S+   C    +L H      S+
Sbjct: 78  TWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESI 137

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
              S +L L    F G+AL+  Y+R RSP+NA +VF  +++++++ + A+I  FA +   
Sbjct: 138 SETSFELDL----FVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHC 193

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
            ++L  F  M+   +          L      + +E+   IH      GLD    +   L
Sbjct: 194 GEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNAL 253

Query: 243 IDGYGKAGIVS-DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           ++ YG+      D   V  + +      AWN ++ GY   G     LE +  L++     
Sbjct: 254 VNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPV 313

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           D+ +F++VL A C +  +    K I    V   L+  +     L +   + G +E+A RI
Sbjct: 314 DKVTFISVLNA-CTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRI 372

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
             +MP    A  W  +L   A HG+++   K+ +++
Sbjct: 373 FDSMPIRS-AVSWNGMLQAYAQHGESEEVLKLIRKM 407



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 126/285 (44%), Gaps = 8/285 (2%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  +ALV+ Y++  S  +A+KVFD +  R V  + +MI  ++ + R  ++  +F  M+  
Sbjct: 46  FVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHE 105

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                       L A      ++  + +      +  + ++ VGT LI  Y +     +A
Sbjct: 106 GERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENA 165

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VF   +   N I W+A++  +A  G     L  F +++  G  P+  +F+++L     
Sbjct: 166 AQVFGR-MKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTT 224

Query: 316 -AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR--AGRLEDAERIAMAMPFEPDAA 372
            +GL  E    I  +   + L+        L++  GR   G L+ AE I   M  E    
Sbjct: 225 PSGL--EELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQIT 281

Query: 373 VWRALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIVANVLS 416
            W  L++   +HG++  A +  +RL ++  P D   ++ V N  +
Sbjct: 282 AWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACT 326



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 3/178 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L +  +  A+ + + IH     S    +V V T L++ Y K G ++DAR+VFD  +   +
Sbjct: 17  LNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFD-GMPCRS 75

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
              WN+M++ Y+          +F  ++  G   D  +FL++L A  N     +  K + 
Sbjct: 76  VGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENL-QHGKHVR 134

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
                   E  L   T LI+   R    E+A ++   M  + +   W A+++  A HG
Sbjct: 135 ESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMK-QKNLITWSAIITAFADHG 191


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 189/581 (32%), Positives = 307/581 (52%), Gaps = 35/581 (6%)

Query: 21  VHARALKSSQ-ADRSIYNNLITNYSK-------------------SNLLSYSLRLFNHIP 60
           +HA A++S   ADR   N L+  Y K                   S       ++F+ + 
Sbjct: 72  LHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMI 131

Query: 61  SPNIVSWTALI---SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLAS---LFKTCASLSH 114
             ++VSW  L+   +       +L     M R     F P+  TL++   +F  CA +  
Sbjct: 132 ERDVVSWNTLVLGCAEEGRHHEALGFVRKMCRE---GFRPDSFTLSTVLPIFAECADVKR 188

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
               GL +H  + +       F GS+L+  Y+     D + KVFD +  RD + + +++ 
Sbjct: 189 ----GLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLA 244

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           G AQN  + ++L +F  M  + V       S  +     LA++   + +H + +  G + 
Sbjct: 245 GCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFED 304

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           NV + + LID Y K G +S A  +FD+ +S  + ++W AM+ GYA  G     L LF  +
Sbjct: 305 NVFISSSLIDMYCKCGEISIAHCIFDK-MSSPDVVSWTAMIMGYALHGPAREALVLFERM 363

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
           E+    P+  +FLAVLTA  +AGL  +  K+ + M   Y + P LEH+  L   +GRAG 
Sbjct: 364 ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGE 423

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414
           L++A      M  +P A+VW  LL    +H    +A ++ K+++++ P    ++V+++N+
Sbjct: 424 LDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNM 483

Query: 415 LSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAEL 474
            S  GRW+E A +R+ M+ + ++K+   SWIEVK K+HVF+A DR H   + I   L   
Sbjct: 484 YSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAF 543

Query: 475 MEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRI 534
            E+  R G+VP  +++  ++ +  K   L  HSEKLA+ FG++S  P G  +R++KNLR+
Sbjct: 544 SEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIIS-TPAGTKIRVMKNLRV 602

Query: 535 CRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           C DCH   K+IS++ +REIVVRD NR+H F +G+C+CGD W
Sbjct: 603 CIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 192/554 (34%), Positives = 315/554 (56%), Gaps = 20/554 (3%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS----LNIFLSM 87
           D S+ N L+  Y++++ L+   ++F+ +   + VSW  +I A ++S  S    + +FL M
Sbjct: 238 DVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEM 297

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           +R     + PN+ T  +L  T +SLS + L    +H+L LK ++ D     +AL+  Y +
Sbjct: 298 MR---AGWSPNRVTFINLLATVSSLSTSKL-SHQIHALILKYNVKDDNAIENALLACYGK 353

Query: 148 FRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
               +N +++F  + ER D V + +MI G+  N  L  ++ +   M         +  + 
Sbjct: 354 SGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFAT 413

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A A +A +E    +H  A+ + L+ +V++G+ L+D Y K G +  A R F+  + V 
Sbjct: 414 VLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNL-MPVR 472

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N  +WN+M++GYA+ G     L LF  +++ G  PD  +F+ VL+A  + GL  E  ++ 
Sbjct: 473 NLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYF 532

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG- 385
           + M   Y L P +EHY+C++  +GRAG L+  E     MP +P+  +WR +L  +   G 
Sbjct: 533 KSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLG-ACCRGN 591

Query: 386 --KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
             K ++  +  + L +++P +   YV+++N+ +  G+W+++A  R+ M++  V+KE G S
Sbjct: 592 GRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCS 651

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
           W+ +K  VHVF+AGD  H     IY KL EL ++    GYVP     L+++    K E L
Sbjct: 652 WVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELL 711

Query: 504 WYHSEKLALAFGLV--SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
            YHSEKLA+AF L   SG P    +RI+KNLR+C DCH +FKYIS+VV+R IV+RD NR+
Sbjct: 712 SYHSEKLAVAFVLTRNSGLP----IRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRF 767

Query: 562 HRFLNGSCTCGDLW 575
           H F +G C+C D W
Sbjct: 768 HHFEDGKCSCRDYW 781



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 172/366 (46%), Gaps = 5/366 (1%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D  + H   LK    +D  + N LI  Y +      + +LF+ +P  N V+W  LIS ++
Sbjct: 18  DANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYT 77

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD-K 134
            + +  +    +       FLPN+    S  + C         G  +H  +++  L+D K
Sbjct: 78  QNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAK 137

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              G+ L++ Y++    D+A+ VF  + ++D V + +MI G  QN    D++  +  MR 
Sbjct: 138 VAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRK 197

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + +  + + +  AL + A L  +   +  HG  +  GLD +V V   L+  Y +   +++
Sbjct: 198 TGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAE 257

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQ-STVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            ++VF   L   + ++WN ++   A  G   S  +E+F  +   G++P+  +F+ +L  +
Sbjct: 258 CQKVFSWMLE-RDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATV 316

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            +   +  S + I  + ++Y ++        L++  G++G +E+ E I   M    D   
Sbjct: 317 SSLSTSKLSHQ-IHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVS 375

Query: 374 WRALLS 379
           W +++S
Sbjct: 376 WNSMIS 381



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA A+++  ++D  I + L+  YSK   + Y+ R FN +P  N+ SW ++IS ++    
Sbjct: 430 VHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGH 489

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112
             N      R      LP+  T   +   C+ +
Sbjct: 490 GDNALRLFTRMKLSGQLPDHITFVGVLSACSHI 522


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 290/559 (51%), Gaps = 23/559 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +H + LK+  Q +  + + LI  Y+K   L ++L++F  +   ++VSWTA+I+    H  
Sbjct: 460 IHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDK 519

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +LN+F  M      S   +    AS    CA +  A   G  +H+ S      D   
Sbjct: 520 FTEALNLFKEMQDQGIKS---DNIGFASAISACAGI-QALDQGRQIHAQSCLSGYSDDLS 575

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+ALV  Y+R      A   FD+I  +D V + +++ GFAQ+    ++L++FA M  + 
Sbjct: 576 IGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAG 635

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +    +    A+ AAA +A +   + IHG    +G D    V   LI  Y K G + D  
Sbjct: 636 LEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-- 693

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
                       I+WN+M+ GY+Q G     L+LF  ++     P+  +F+ VL+A  + 
Sbjct: 694 ------------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHV 741

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E   +   M   + L P  EHY C++  +GR+G L  A+R    MP +PDA VWR 
Sbjct: 742 GLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRT 801

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LLS   +H   D+       L+++ P D + YV+V+N+ +  G+WD     R++MKDR V
Sbjct: 802 LLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGV 861

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +KE GRSW+EV   VH F AGD+ H R + IY  L  L       GYVP  + +L +   
Sbjct: 862 KKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEI 921

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
           R+K      HSE+LA+AFGL+S       L + KNLR+C DCH   K++S++ +R I+VR
Sbjct: 922 RQKDPTEIIHSERLAIAFGLLS-LTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVR 980

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F  GSC+C D W
Sbjct: 981 DSYRFHHFKVGSCSCKDYW 999



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 205/468 (43%), Gaps = 79/468 (16%)

Query: 13  NTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHI----PSPNIVSWT 68
           N S+  +I H      SQ DR  YN+LI+  ++   ++ +L LF  +      P+ V+  
Sbjct: 301 NLSSAEQIFHCM----SQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVA 356

Query: 69  ALISA-------------HS--------------NSPLSLNIFLSMLRHPTLSFL----- 96
           +L+SA             HS               S L L +  S ++     FL     
Sbjct: 357 SLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQL 416

Query: 97  -------------------PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                              PNQ T  S+ KTC +L    L G  +H+  LK       + 
Sbjct: 417 DNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL-GEQIHTQVLKTGFQFNVYV 475

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            S L+  Y++    D+A K+F  ++E DVV + AMI G+ Q+ +  ++L++F +M+   +
Sbjct: 476 SSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGI 535

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            S     + A+ A A + A++Q R IH  + +SG   ++ +G  L+  Y + G V +A  
Sbjct: 536 KSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYA 595

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            FD+ +   ++++WN++++G+AQ G     L +F  +   G   + ++F + ++A  N  
Sbjct: 596 AFDQ-IYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIA 654

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
                 K I  M  +   +   E    LI+   + G ++D                W ++
Sbjct: 655 NV-RIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDIS--------------WNSM 699

Query: 378 LSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDE 423
           ++  + HG    A K+ + +  +D+ P +   +V V +  S VG  DE
Sbjct: 700 ITGYSQHGCGFEALKLFEDMKQLDVLP-NHVTFVGVLSACSHVGLVDE 746



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 166/380 (43%), Gaps = 34/380 (8%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA+ + S  ++   I N LI  Y K+  LS + ++F ++ + + VSW A+IS  S +  
Sbjct: 186 IHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGY 245

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                L          L  Q  L++  K        F FG  LH L LK     + +  +
Sbjct: 246 EEEAML----------LFCQIVLSACTKV-----EFFEFGKQLHGLVLKQGFSSETYVCN 290

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV  YSR  +  +A+++F  + +RD V Y ++I G AQ   +  +L++F  M       
Sbjct: 291 ALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKP 350

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               V+  L A A + A+   +  H +A+ +G+  +++V   L+D Y K   +  A   F
Sbjct: 351 DCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF 410

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
                             Y Q  + +   ++F  +++ G  P+++++ ++L      G  
Sbjct: 411 ----------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGAT 454

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
              E+ I    ++   +  +   + LI    + G+L+ A +I   +  E D   W A+++
Sbjct: 455 DLGEQ-IHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIA 512

Query: 380 FSAIHGKADMASKMGKRLID 399
               H K   A  + K + D
Sbjct: 513 GYTQHDKFTEALNLFKEMQD 532



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/476 (18%), Positives = 197/476 (41%), Gaps = 68/476 (14%)

Query: 33  RSIYN--NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH 90
           RS Y+   LI  Y     L+ ++ +F+ +P  ++  W  + +      L   +     R 
Sbjct: 95  RSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRM 154

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
            T +   ++R  A + + C+  + +F F   +H+ ++        F  + L+  Y +   
Sbjct: 155 LTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGF 214

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
             +AKKVF+ ++ RD V + AMI G +QN    +++ +F  +               L A
Sbjct: 215 LSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSA 260

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
             ++   E  + +HG  +  G      V   L+  Y ++G +S A ++F   +S  + ++
Sbjct: 261 CTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIF-HCMSQRDRVS 319

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           +N++++G AQQG  +  L LF  + +    PD  +  ++L+A  + G     +++     
Sbjct: 320 YNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHS--- 376

Query: 331 VRYKLEPGL------------------------EHYTCLISAMGRAGRLEDAERIAMAMP 366
             Y ++ G+                        E + C     G+   L  + +I   M 
Sbjct: 377 --YAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLC----YGQLDNLNKSFQIFTQMQ 430

Query: 367 FE---PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV--IVANVLSGVGRW 421
            E   P+   + ++L      G  D+  ++  +++    +  + YV  ++ ++ +  G+ 
Sbjct: 431 IEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTG-FQFNVYVSSVLIDMYAKHGKL 489

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEE 477
           D   ++      RR+++    SW  +       +AG   H++  +      E+ ++
Sbjct: 490 DHALKIF-----RRLKENDVVSWTAM-------IAGYTQHDKFTEALNLFKEMQDQ 533


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 183/549 (33%), Positives = 279/549 (50%), Gaps = 38/549 (6%)

Query: 62  PNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
           PN+++W  L+S  + S  + +  L+++R     FLP+   ++        +    + G  
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAV-GEQ 177

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA---- 177
           LH   +K          +AL+  Y +    D   +VFDE    DV    A++ G +    
Sbjct: 178 LHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQ 237

Query: 178 -------------------------------QNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
                                          QN R ++++ +F +M+S  +      +  
Sbjct: 238 VSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPC 297

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A A +AA+   R  H  ++  G   ++ VG+ L+D Y K G V DAR +F E +   
Sbjct: 298 VLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIF-EAMPYR 356

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N ++WNAM+ GYA  G+    + LF  ++     PD  +F  VL A   AG   E   + 
Sbjct: 357 NVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYF 416

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             M+ ++ + P +EHY C+++ +GRAG+L+DA  I   MPFEPD  +W +LL    +HG 
Sbjct: 417 NEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGN 476

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
             +A    + L  + P +   YV+++N+ +    WD V  +R +MK   ++KE G SWIE
Sbjct: 477 VVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIE 536

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           +K KVH+ LAGD  H     I  KL  L  E  RLG+ P  D +LH+V ++EK + L  H
Sbjct: 537 IKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVH 596

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+A GL+S    G  L+++KNLRIC DCHE+ K+IS    REI VRD NR+H F +
Sbjct: 597 SEKLAVALGLIS-TSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKD 655

Query: 567 GSCTCGDLW 575
           G C+C D W
Sbjct: 656 GKCSCADYW 664



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 153/384 (39%), Gaps = 89/384 (23%)

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
           L+ LRH  +SF P+ R L S  K+C++L  A     +LH+ +    +    F  S+L+H 
Sbjct: 11  LNFLRH--VSFPPDPRLLPSALKSCSALRLA----RALHAAAAVAGVSRDAFVASSLLHA 64

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC- 203
           Y RF +  +A+ V D +  R VV + A+I   A +     +  +   MRS  V   +   
Sbjct: 65  YLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITW 124

Query: 204 ----------------------------------VSGALRAAAELAAMEQCRVIHGHAVV 229
                                             VS AL A  ++  +     +HG+ V 
Sbjct: 125 NGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVK 184

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE------------------NLSV------ 265
           +G   +  V T LID YGK G   +  RVFDE                  N  V      
Sbjct: 185 AGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRL 244

Query: 266 ----------LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
                     LN ++W +++A   Q G     ++LF  ++  G  P+  +   VL A  N
Sbjct: 245 FREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFAN 304

Query: 316 --AGLAGESEKWIERMKVRYKLEPGLEH----YTCLISAMGRAGRLEDAERIAMAMPFEP 369
             A + G S          + L  G  H     + L+    + GR+ DA  I  AMP+  
Sbjct: 305 IAALMHGRSAHC-------FSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR- 356

Query: 370 DAAVWRALLSFSAIHGKADMASKM 393
           +   W A++   A+HG+A+ A ++
Sbjct: 357 NVVSWNAMIGGYAMHGEAENAVRL 380



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 121/266 (45%), Gaps = 14/266 (5%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP----NIVSWTALISAHSNSPLSLN 82
           +SS  D +  N L+   S++  +S +LRLF          N+VSWT++++    +   L 
Sbjct: 216 ESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLE 275

Query: 83  IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142
                    +    PN  T+  +    A+++ A + G S H  SL+   H   + GSALV
Sbjct: 276 AVDLFREMQSEGIEPNSVTIPCVLPAFANIA-ALMHGRSAHCFSLRKGFHHDIYVGSALV 334

Query: 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
             Y++     +A+ +F+ +  R+VV + AMI G+A +    +++ +F  M+SS     + 
Sbjct: 335 DMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLV 394

Query: 203 CVSGALRAAAELAAMEQCR-----VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             +  L A ++    E+ R     + H H +   ++    + T L    G+AG + DA  
Sbjct: 395 TFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLL----GRAGKLDDAYD 450

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGD 283
           + ++     +   W +++      G+
Sbjct: 451 IINQMPFEPDGCIWGSLLGSCRVHGN 476


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 189/576 (32%), Positives = 308/576 (53%), Gaps = 43/576 (7%)

Query: 38  NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL-SLNIFLSMLRHPTL-SF 95
           N     S S+ L+Y+L+LF+ IP P+   +  +I    +S L   N  L +  H    S 
Sbjct: 62  NFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSV 121

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           LPN  T  SL   C  + H    G+ +H+   K        C ++L+H Y  F++ + A+
Sbjct: 122 LPNNFTFPSLLIACRKIQH----GMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEAR 177

Query: 156 KVFDEIRERDVVCYGAMIVGFA-------------------------------QNSRLVD 184
           +VF  I   D V + ++I G++                               Q +R  +
Sbjct: 178 RVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHE 237

Query: 185 SLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           + ++F  M++ +      +  +  L A   L A++Q + IH +   +G++ +  + T ++
Sbjct: 238 AFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIV 297

Query: 244 DGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           D Y K G +  A +VF    L      +WN M+ G A  G+    ++LF  +E +  APD
Sbjct: 298 DMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPD 357

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           + +FL +LTA  ++GL  E   +   M   Y +EP +EH+ C++  +GRAG + +A ++ 
Sbjct: 358 DITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLI 417

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             MP  PD  V   LL     H   ++  ++G+R+I++ P +   YV++AN+ +  G+W+
Sbjct: 418 DEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWE 477

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
           + A+VRK+M DR V+K  G S IE++G VH F+AG+R H + ++++ K+ E++E  + +G
Sbjct: 478 DAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVG 537

Query: 483 YVPVWDEMLHNVGDREKREA---LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCH 539
           YV   + +LH     E+ +    L+YHSEKLA+AFGL    P G+TLRI+KNLRIC DCH
Sbjct: 538 YVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKP-GETLRILKNLRICEDCH 596

Query: 540 ESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + K IS V +REI+VRD  R+HRF  G C+C D W
Sbjct: 597 HACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 100/237 (42%), Gaps = 7/237 (2%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIF--LSM 87
             D   + +LI+ YSK  L+  +  +F  +P  N  SW A+++A+  +      F     
Sbjct: 185 HPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDR 244

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           ++    + L ++    ++   C  L  A   G  +H    +  +       +A+V  Y +
Sbjct: 245 MKAENNNVL-DKFVATTMLSACTGLG-ALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCK 302

Query: 148 FRSPDNAKKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205
               + A +VF  +    R +  +  MI G A +     ++ +F +M    V        
Sbjct: 303 CGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFL 362

Query: 206 GALRAAAELAAMEQCRVIHGHAV-VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
             L A A    +E+ R    + + V G++  +     ++D  G+AG+V +AR++ DE
Sbjct: 363 NLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDE 419


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 305/550 (55%), Gaps = 31/550 (5%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N +I+ Y++   LS + RLF   P  ++ +WTA++ A+            ML      F
Sbjct: 222 WNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQD--------GMLDEARRVF 273

Query: 96  --LPNQRTLASLFKTCASLSHAFLFGLSLHS-LSLKLSLHDK---PFCGS--ALVHFYSR 147
             +P +R ++          +  + G + +  + +   L ++   P  GS   ++  Y +
Sbjct: 274 DEMPQKREMSY---------NVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQ 324

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR--SSDVGSTMYCVS 205
                 A+ +FD + +RD V + A+I G+AQN    +++++  +M+     +  + +C  
Sbjct: 325 NGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCC- 383

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
            AL A A++AA+E  + +HG  V +G ++  +VG  L+  Y K G + +A  VF + +  
Sbjct: 384 -ALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVF-QGVQH 441

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            + ++WN M+AGYA+ G     L +F  +   G  PDE + + VL+A  + GL     ++
Sbjct: 442 KDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEY 501

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
              M   Y + P  +HY C+I  +GRAG LE+A+ +   MPFEPDAA W ALL  S IHG
Sbjct: 502 FHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHG 561

Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445
             ++  +  + +  + P++   YV+++N+ +  GRW +V+++R  M+   V+K  G SW+
Sbjct: 562 NMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWV 621

Query: 446 EVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWY 505
           EV+ K+H F  GD  H     IY  L EL  + +  GYV     +LH+V + EK+  L Y
Sbjct: 622 EVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKY 681

Query: 506 HSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFL 565
           HSEKLA+AFG+++  P GK +R++KNLR+C DCH + K+IS++V R I+VRD +RYH F 
Sbjct: 682 HSEKLAVAFGILT-MPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFS 740

Query: 566 NGSCTCGDLW 575
            G C+C D W
Sbjct: 741 EGICSCRDYW 750



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 170/366 (46%), Gaps = 40/366 (10%)

Query: 58  HIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSH 114
           H   P+ V  T  IS H    +  L+L +F +M    ++S+      + S +   A  S 
Sbjct: 27  HFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSY----NAMISGYLRNAKFSL 82

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
           A         L  K+  H   F  + ++  Y+R R   +A+ +FD + E+DVV + AM+ 
Sbjct: 83  A-------RDLFDKMP-HKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLS 134

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           G+ ++  + ++  VF  M   +  S     +G L A      +E+ R +      S  D 
Sbjct: 135 GYVRSGHVDEARDVFDRMPHKNSISW----NGLLAAYVRSGRLEEARRL----FESKSDW 186

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
            +I    L+ GY K  ++ DAR++FD+ + V + I+WN M++GYAQ GD S    LF   
Sbjct: 187 ELISCNCLMGGYVKRNMLGDARQLFDQ-IPVRDLISWNTMISGYAQDGDLSQARRLFEES 245

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
            +R    D +++ A++ A    G+  E+ +  + M  + ++      Y  +I+   +  R
Sbjct: 246 PVR----DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMS-----YNVMIAGYAQYKR 296

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414
           ++    +   MPF P+   W  ++S    +G  D+A    + L D+ P  DS  V  A +
Sbjct: 297 MDMGRELFEEMPF-PNIGSWNIMISGYCQNG--DLAQ--ARNLFDMMPQRDS--VSWAAI 349

Query: 415 LSGVGR 420
           ++G  +
Sbjct: 350 IAGYAQ 355


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/530 (36%), Positives = 291/530 (54%), Gaps = 7/530 (1%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALI--SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLF 106
           LSY+L +F +IP P+   W A+I  +A S+ P +   +   +         +  T +   
Sbjct: 51  LSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFAL 110

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166
           K CA  + A    + LHS  L+   +      + L+  Y++    D A+K+FDE+ + D+
Sbjct: 111 KACAR-ALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDI 169

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADMR-SSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
             + A+I GFAQ SR  D++  F  M+   ++      V GAL A ++L A+++   +H 
Sbjct: 170 ASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHK 229

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           + V   LD NV V   +ID Y K G +  A  VF+      + I WN M+  +A  GD  
Sbjct: 230 YIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGH 289

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             L+LF  L   G +PD  S+LAVL A  +AGL  +  K    M  R  LEP ++HY  +
Sbjct: 290 KALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSM 348

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +  +GRAGRL++A  I  ++PF P+  +W+ LL     +G  +MA    ++L+++     
Sbjct: 349 VDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISC 407

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             +V+++NV +   RWD+V  VR  M+ R V+K  G S+IE+KGK++ F+ GD+ H    
Sbjct: 408 GXFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCR 467

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT 525
           +IY KL E+    +  GY      +LH++GD +K  AL YHSEKLA+AFGL      G  
Sbjct: 468 EIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTC-TEEGTP 526

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++++KNLRIC DCH   K IS++  REI+VRD  R+HRF  G C+C D W
Sbjct: 527 IQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 114/266 (42%), Gaps = 5/266 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H++ L+    AD  +   L+  Y+K   L  + +LF+ +P P+I SW ALI+  +    
Sbjct: 125 LHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSR 184

Query: 80  SLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
             +  ++  R      L PN  T+      C+ L  A   G S+H   ++  L       
Sbjct: 185 PADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLG-ALKEGESVHKYIVEEKLDSNVQVC 243

Query: 139 SALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           + ++  Y++  S D A  VF+ +R ++ ++ +  MI+ FA +     +L +F  +  S +
Sbjct: 244 NVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGM 303

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                     L A      +E    +       GL+ N+     ++D  G+AG + +A  
Sbjct: 304 SPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYD 363

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGD 283
           +   +L   N + W  ++      GD
Sbjct: 364 IV-SSLPFPNMVLWQTLLGACRTYGD 388


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/552 (33%), Positives = 317/552 (57%), Gaps = 15/552 (2%)

Query: 32   DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL--ISAHSNSPL--SLNIFLSM 87
            D S+ N L+  Y +   +S    +FN + + ++VSW ++  + A S +P+  S+ +F +M
Sbjct: 518  DTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNM 577

Query: 88   LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
            ++      +PN+ T  +       LS     G  +HS+ LK  + +     +AL+  Y++
Sbjct: 578  MKS---GLVPNKVTFVNFLAALTPLS-VLELGKQIHSVMLKHGVTEDNAVDNALMSCYAK 633

Query: 148  FRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
                D+ +++F  +   RD + + +MI G+  N  L +++     M  S+        S 
Sbjct: 634  SGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSI 693

Query: 207  ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
             L A A +AA+E+   +H   + S L+ +V+V + L+D Y K G +  A +VF  ++S  
Sbjct: 694  VLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVF-HSMSQK 752

Query: 267  NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
            N  +WN+M++GYA+ G     LE+F  ++  G +PD  +F++VL+A  +AGL      + 
Sbjct: 753  NEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYF 812

Query: 327  ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL---SFSAI 383
            E M+  Y + P +EHY+C+I  +GRAG L+  +     MP +P+  +WR +L     S  
Sbjct: 813  ELME-DYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKH 871

Query: 384  HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
              K D+ ++  + L+++ P +   YV+ +   + +GRW++ A+ R  MK   V+KE GRS
Sbjct: 872  RAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRS 931

Query: 444  WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
            W+ +   VH F+AGDR H  T++IY KL  L+++    GYVP+ + +LH++ +  K E L
Sbjct: 932  WVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELL 991

Query: 504  WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
             YHSEKLA+AF +++ +  G  +RI+KNLR+C DCH +F+YIS++V R+I++RD  R+H 
Sbjct: 992  RYHSEKLAVAF-VLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHH 1050

Query: 564  FLNGSCTCGDLW 575
            F +G C+CGD W
Sbjct: 1051 FKDGKCSCGDYW 1062



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 130/289 (44%), Gaps = 20/289 (6%)

Query: 18  PRIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           P  +H   +K     D  + N+L+ +Y+K   L  + R+F+ +P  N VSWT LIS H  
Sbjct: 84  PESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVL 143

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLH 132
           S L   +  +F +MLR       P   T  S+ + C       L F + +H L  K    
Sbjct: 144 SGLPEDAFPLFRAMLREGP-GCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFT 202

Query: 133 DKPFCGSALVHFYS--RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                 +AL+  Y       P  A++VFD    RD++ + A++  +A+    + + ++F 
Sbjct: 203 SNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFR 262

Query: 191 DMRSSDVGSTM--------YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
            M+  D G  +          ++    ++  L  ++Q  V     + SG   ++ VG+ L
Sbjct: 263 AMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFV---RVLKSGCSSDLYVGSAL 319

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           +  + + G++ +A+ ++   L   N++  N ++AG  +Q       E+F
Sbjct: 320 VSAFARHGMLDEAKDIY-LGLKERNAVTLNGLIAGLVKQQHGEAAAEIF 367



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 162/365 (44%), Gaps = 15/365 (4%)

Query: 24  RALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPL 79
           R LKS   +D  + + L++ +++  +L  +  ++  +   N V+   LI+      +   
Sbjct: 303 RVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEA 362

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA---FLFGLSLHSLSLKLS-LHDKP 135
           +  IF+       +    N  T   L    A  S A      G  +H+  L+   ++ K 
Sbjct: 363 AAEIFMGARDSAAV----NVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKI 418

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              + LV+ Y++  + D A +VF  +  RD + +  +I    QN     ++  +  MR +
Sbjct: 419 AVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQN 478

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +G + +     L + A L  +   + +H  AV  GL  +  V   L+  YG+ G +S+ 
Sbjct: 479 SIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSEC 538

Query: 256 RRVFDENLSVLNSIAWNAMMAGYA-QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
             +F+ ++S  + ++WN++M   A  Q   +  +++F  +   G  P++ +F+  L AL 
Sbjct: 539 WEIFN-SMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALT 597

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
              +  E  K I  + +++ +         L+S   ++G ++  ER+   M    DA  W
Sbjct: 598 PLSVL-ELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISW 656

Query: 375 RALLS 379
            +++S
Sbjct: 657 NSMIS 661



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 136/312 (43%), Gaps = 24/312 (7%)

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
           SLH   +K  L    F  + LV+ Y++    D A++VFD +  R+ V +  +I G   + 
Sbjct: 86  SLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSG 145

Query: 181 RLVDSLSVFADMRSSDVGS--TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD--RNV 236
              D+  +F  M     G   T +     LRA  +         +  H +VS  +   N 
Sbjct: 146 LPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNT 205

Query: 237 IVGTGLIDGYGKAGIVSD--ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
            V   LI  YG   +     A+RVFD    V + I WNA+M+ YA++GD      LF  +
Sbjct: 206 TVCNALISMYGSCSVGPPILAQRVFDTT-PVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 295 EMRG----FAPDEYSFLAVLTAL----CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
           +         P E++F +++TA     C+ GL  +    + +      L  G    + L+
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVG----SALV 320

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS--FSAIHGKADMASKMGKRLIDINPYD 404
           SA  R G L++A+ I + +  E +A     L++      HG+A     MG R  D    +
Sbjct: 321 SAFARHGMLDEAKDIYLGLK-ERNAVTLNGLIAGLVKQQHGEAAAEIFMGAR--DSAAVN 377

Query: 405 DSAYVIVANVLS 416
              YV++ + ++
Sbjct: 378 VDTYVVLLSAIA 389


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/556 (32%), Positives = 307/556 (55%), Gaps = 4/556 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA  LKS  +++  + N LI  Y+    +  +  +F+ +P  +IV+W +++S ++ + L
Sbjct: 143 VHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGL 202

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
              +     +   L    +  T+ S+   C  L++    G  +    +   L       +
Sbjct: 203 WDEVVKLFRKILELRIEFDDVTMISVLMACGRLAN-LEIGELIGEYIVSKGLRRNNTLTT 261

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +L+  Y++    D A+K+FDE+ +RDVV + AMI G+AQ  R  ++L++F +M+  +V  
Sbjct: 262 SLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYP 321

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               +   L + A L A E  + +H +     +   V +GT LID Y K G +  +  VF
Sbjct: 322 NEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVF 381

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +S  N   W A++ G A  G+    LE F  +      P++ +F+ VL+A  +A L 
Sbjct: 382 KE-MSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLV 440

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +       M+  + +EP +EHY C++  +GRAG LE+A +    MPF P+A VWR LL+
Sbjct: 441 DQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLA 500

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
               H   +MA K  + +  + P     Y++++N  + VGR ++   VR ++K++ ++K 
Sbjct: 501 SCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKI 560

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S IE+ G VH F + D  H+ +++I+  L ++M++ +RLGYVP  D+      +  K
Sbjct: 561 PGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESK 620

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             ++ +HSEKLA+A+GL+  +PR  T+RI KNLR+CRDCH + K+IS+V ER I+VRD N
Sbjct: 621 ETSVSHHSEKLAIAYGLIRTSPR-TTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRN 679

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+C D W
Sbjct: 680 RFHHFKDGLCSCNDYW 695



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 184/400 (46%), Gaps = 9/400 (2%)

Query: 10  QPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSK---SNLLSYSLRLFNHIPSPNIVS 66
           Q   T  D + VHA  LK+ +    I    +   +     + + Y+L +FNHI  P   +
Sbjct: 29  QQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSA 88

Query: 67  WTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLS 126
           +  +I   +      N  L   +    S   ++ T +S+ K C+ +  A   G  +H+L 
Sbjct: 89  YNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMK-ALREGEQVHALI 147

Query: 127 LKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186
           LK       F  + L+  Y+       A+ VFD + ER +V + +M+ G+ +N    + +
Sbjct: 148 LKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVV 207

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
            +F  +    +      +   L A   LA +E   +I  + V  GL RN  + T LID Y
Sbjct: 208 KLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMY 267

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            K G V  AR++FDE +   + +AW+AM++GYAQ       L LFH ++     P+E + 
Sbjct: 268 AKCGQVDTARKLFDE-MDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTM 326

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
           ++VL +    G A E+ KW+     + K++  +   T LI    + G ++ +  +   M 
Sbjct: 327 VSVLYSCAMLG-AYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMS 385

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINPYD 404
           F+ +   W AL+   A +G+  MA +    ++  D+ P D
Sbjct: 386 FK-NVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPND 424


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/536 (33%), Positives = 305/536 (56%), Gaps = 4/536 (0%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  A+K+ +  +  +   L+  Y+K   +  +   F  IP  +++  + +IS ++ S  
Sbjct: 285 IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQ 344

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +   F   LR    S LPN+ +L+S+ + C ++     FG  +H+ ++K+      F G+
Sbjct: 345 NEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ-LDFGKQIHNHAIKIGHESDLFVGN 403

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL+ FY++    D++ K+F  +R+ + V +  ++VGF+Q+    ++LSVF +M+++ +  
Sbjct: 404 ALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPC 463

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T    S  LRA A  A++     IH     S  + + ++G  LID Y K G + DA +VF
Sbjct: 464 TQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF 523

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            ++L   + I+WNA+++GYA  G  +  LELF  +       ++ +F+A+L+   + GL 
Sbjct: 524 -QHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLV 582

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
                  + M++ + ++P +EHYTC++  +GRAGRL DA +    +P  P A VWRALLS
Sbjct: 583 NHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 642

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IH    +     +++++I P D++ YV+++N+ +  G  D+VA +RK M++  VRK 
Sbjct: 643 SCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKV 702

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SW+E+KG++H F  G   H     I   L  L  +  R GY+P  + +LH+V   +K
Sbjct: 703 PGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQK 762

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
              LW HSE+LALA+GLV   P G  +RI+KNLR C DCH +F  IS++V+REI+V
Sbjct: 763 TRMLWVHSERLALAYGLVM-TPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIV 817



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 177/387 (45%), Gaps = 11/387 (2%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           + LI  YS  +L+S +  +FN I   + V WTA++S +S +    N F    +       
Sbjct: 201 SGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCK 260

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN   L S+ K    L    L G  +H  ++K     +P  G AL+  Y++     +A+ 
Sbjct: 261 PNPFALTSVLKAAVCLPSVVL-GKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARL 319

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
            F+ I   DV+    MI  +AQ+++   +  +F  +  S V    Y +S  L+A   +  
Sbjct: 320 AFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ 379

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           ++  + IH HA+  G + ++ VG  L+D Y K   +  + ++F  +L   N ++WN ++ 
Sbjct: 380 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF-SSLRDANEVSWNTIVV 438

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL---AGESEKWIERMKVRY 333
           G++Q G     L +F  ++       + ++ +VL A  +      AG+    IE+     
Sbjct: 439 GFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNN 498

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
               G      LI    + G + DA ++   +  E D   W A++S  A+HG+A  A ++
Sbjct: 499 DTVIG----NSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADALEL 553

Query: 394 GKRLIDIN-PYDDSAYVIVANVLSGVG 419
             R+   N   +D  +V + +V S  G
Sbjct: 554 FDRMNKSNVESNDITFVALLSVCSSTG 580



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 142/305 (46%), Gaps = 15/305 (4%)

Query: 19  RIVHARALKSS---QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           R VH   ++     + D    N L+  Y K   L+ + RLF+ +P  N+VS+  L+ AH+
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 76  N-----SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
                 +  +L   L    H       NQ  L ++ K   ++  A L G  +HS + KL 
Sbjct: 139 QRGDFEAAAALFRRLRWEGHEV-----NQFVLTTMLKLAIAMDAAGLAG-GVHSCAWKLG 192

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                F GS L+  YS      +A+ VF+ I  +D V + AM+  +++N    ++  VF+
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            MR S      + ++  L+AA  L ++   + IHG A+ +  D    VG  L+D Y K G
Sbjct: 253 KMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCG 312

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            + DAR  F E +   + I  + M++ YAQ        ELF  L      P+EYS  +VL
Sbjct: 313 DIKDARLAF-EMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVL 371

Query: 311 TALCN 315
            A  N
Sbjct: 372 QACTN 376



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 221 RVIHGHAVV-SGLDR-NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           R +HGH V   G+ R ++     L++ YGK G ++ ARR+FD  +   N +++  ++  +
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDR-MPERNMVSFVTLVQAH 137

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEY---SFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           AQ+GD      LF  L   G   +++   + L +  A+  AGLAG       ++   +  
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             G    + LI A      + DAE +   +    DA VW A++S
Sbjct: 198 FVG----SGLIDAYSLCSLVSDAEHVFNGI-VRKDAVVWTAMVS 236


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/540 (35%), Positives = 300/540 (55%), Gaps = 9/540 (1%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRHPTLSF 95
           L+  Y+K   +  +  + + +   ++V +TALI   S H     SL +F +M +      
Sbjct: 218 LVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKK---GI 274

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
             N+ TL+S+   C +L      G  +H L +K  L       ++L+  Y R    D++ 
Sbjct: 275 EANEYTLSSVLVCCGNLED-LTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSL 333

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           KVF +    + V + ++IVG  QN R   +L  F  M  S +    + +S  LRA + LA
Sbjct: 334 KVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLA 393

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            +EQ + IH   +  GLD +  VG  LID YGK G    AR VF+  L V + ++ N+M+
Sbjct: 394 MLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEV-DVVSVNSMI 452

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
             YAQ G     L+LF  ++  G  P+  ++L VL+A  NAGL  E        +    +
Sbjct: 453 YSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNI 512

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           E   +HY C++  +GRAGRL++AE +   +    D  +WR LLS   IHG  +MA ++  
Sbjct: 513 ELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMN 571

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
           R+ID+ P D   +V+++N+ +  G W +V E++  M++ R++K    SW++V+ ++H F+
Sbjct: 572 RVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFM 631

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
           AGD  H    DI  KL EL+E+ + LGYVP    +L ++ + +K  +L+YHSEKLA+AF 
Sbjct: 632 AGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFA 691

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           L     +  T+RI+KNLR+C DCH   K++S++V R+I+ RDV R+H F NG C+CGD W
Sbjct: 692 LWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 178/361 (49%), Gaps = 11/361 (3%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           L QQ     + TD   + + ALK      S+ N LI  Y K   + Y+ ++F+ +P  +I
Sbjct: 83  LIQQCIGIKSITDITKIQSHALKRG-FHHSLGNKLIDAYLKCGSVVYARKVFDEVPHRHI 141

Query: 65  VSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
           V+W ++I+++     S  +++I+  M+  P    LP++ T +S+FK  + L      G  
Sbjct: 142 VAWNSMIASYIRNGRSKEAIDIYQRMV--PD-GILPDEFTFSSVFKAFSDLGLVHE-GQR 197

Query: 122 LHSLSLKLSLH-DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            H  S+ L +     F GSALV  Y++F    +A+ V D++  +DVV + A+IVG++ + 
Sbjct: 198 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHG 257

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              +SL VF +M    + +  Y +S  L     L  +   R+IHG  V +GL+  V   T
Sbjct: 258 EDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQT 317

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            L+  Y + G+V D+ +VF + ++  N + W +++ G  Q G +   L  F  +      
Sbjct: 318 SLLTMYYRCGLVDDSLKVFKQFINP-NQVTWTSVIVGLVQNGREEIALLKFRQMLRSSIT 376

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
           P+ ++  +VL A C++    E  K I  + +++ L+        LI   G+ G  E A  
Sbjct: 377 PNSFTLSSVLRA-CSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARS 435

Query: 361 I 361
           +
Sbjct: 436 V 436


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 196/552 (35%), Positives = 301/552 (54%), Gaps = 18/552 (3%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--SPLSLNIFLSML 88
           +D  +   L+  Y++   +  +   F  +P  N VSWT++I+A +     L++  F +ML
Sbjct: 265 SDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLLAVETFHAML 324

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                  +P + TL +  + C  L  A L    + +++ ++ +       + LV  Y+R 
Sbjct: 325 LE---GVVPTRSTLFAALEGCEDLHTARL----VEAIAQEIGVATDVAIVTDLVMAYARC 377

Query: 149 RSPDNAKKVFD--EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
              ++A +VF   E  E D     AMI  +AQ      +  ++       +         
Sbjct: 378 DGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYIT 437

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSG---LDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           AL A A LAA+ + R IH  A V+    LDR+V +G  ++  YG+ G + DAR  FD  +
Sbjct: 438 ALDACASLAALSEGRQIH--ACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFD-GM 494

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              + I+WNAM++  AQ G      +LF  +   GF  +  +FL +L+A  +AGL     
Sbjct: 495 PARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGC 554

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           +    M   + + P  EHY C++  +GR GRL DA  I  AMP  PDAA W AL+    I
Sbjct: 555 EHFSAMTGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRI 614

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           +G  +      +R++++     +AYV + N+ S  GRW++ A VRK+M D  +RK  G S
Sbjct: 615 YGDTERGRFAAERVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVS 674

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
            IE++ KVH F+  DR H ++E IY +L  +M   ER GY  V  E+LH+V + +K + L
Sbjct: 675 SIEIRSKVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLL 734

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
            +HSEKLA+AFG++S  P+G TLR++KNLR+C DCH + K+IS+V  REIVVRDV R+H 
Sbjct: 735 RFHSEKLAIAFGMMS-TPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHH 793

Query: 564 FLNGSCTCGDLW 575
           F +G+C+CGD W
Sbjct: 794 FKDGACSCGDYW 805



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 162/359 (45%), Gaps = 19/359 (5%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSML 88
           D  + ++L+  Y +   L  ++ +F+ I   +IV WT LISA+    +S  ++ +F  +L
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           +        +     S+   C+  S  FL  G  +H  +++  L  +    SALV  Y R
Sbjct: 121 QE---GIALDAIVFVSVLSACS--SEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGR 175

Query: 148 FRSPDNAKKVFDEI-RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
             S  +A  +F  + R  DVV + AMI   +QN    ++L +F  M    +   +     
Sbjct: 176 CGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVS 235

Query: 207 ALRAAAELAAMEQCRVIHGHAVV--SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
             +A +   ++   +V   H  +  +GL  +V+V T L++ Y + G +  AR  F   + 
Sbjct: 236 VFKACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFF-AAMP 294

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             N+++W +M+A +AQ G    V E FH + + G  P   +  A L    +      + +
Sbjct: 295 ERNAVSWTSMIAAFAQIGHLLAV-ETFHAMLLEGVVPTRSTLFAALEGCEDL----HTAR 349

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSA 382
            +E +     +   +   T L+ A  R    EDA R+  A    E DAA+  A+++  A
Sbjct: 350 LVEAIAQEIGVATDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYA 408


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 321/572 (56%), Gaps = 12/572 (2%)

Query: 9   PQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSW 67
           PQ  + ST   ++H   +K   + D  + N LI  Y+K   L  + + F  +   ++VSW
Sbjct: 327 PQLGDIST-AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSW 385

Query: 68  TALISAH--SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL 125
            ++I+A+  ++ P++ + F   ++     F P+  TL SL    A  S       S+H  
Sbjct: 386 NSIIAAYEQNDDPVTAHGFFVKMQ--LNGFQPDLLTLVSLASIVAQ-SRDCKNSRSVHGF 442

Query: 126 SLKLS-LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
            ++   L +    G+A+V  Y++    D+A KVF+ I  +DV+ +  +I G+AQN    +
Sbjct: 443 IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASE 502

Query: 185 SLSVFADMRS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           ++ V+  M    ++          L A A + A++Q   IHG  + + L  +V V T LI
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLI 562

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           D YGK G + DA  +F + +   +S+ WNA+++ +   G     L+LF  +   G  PD 
Sbjct: 563 DVYGKCGRLVDAMSLFYQ-VPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDH 621

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            +F+++L+A  ++G   E  KW  R+   Y ++P L+HY C++  +GRAG LE A     
Sbjct: 622 VTFVSLLSACSHSGFV-EEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIK 680

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            MP +PDA++W ALL    IHG  ++      RL +++  +   YV+++N+ + VG+W+ 
Sbjct: 681 DMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEG 740

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
           V +VR + ++R ++K  G S IEV  KV VF  G++ H + ++IY +L  L  + + LGY
Sbjct: 741 VDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGY 800

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           +P +  +L +V + EK   L  HSE+LA+AFG++S  P+   +RI KNLR+C DCH + K
Sbjct: 801 IPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK-SPIRIFKNLRVCGDCHNATK 859

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +ISR+ +REIVVRD NR+H F +G C+CGD W
Sbjct: 860 FISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 198/454 (43%), Gaps = 27/454 (5%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           I   L+  Y+    +S S   F+ IP  ++ +W ++ISA+ ++     ++  F  +L   
Sbjct: 153 ISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVS 212

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            +   P+  T   + K C +L    + G  +H  + KL      F  ++L+H YSRF   
Sbjct: 213 EIR--PDFYTFPPVLKACGTL----VDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFT 266

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A+ +FD++  RD+  + AMI G  QN     +L V  +MR   +      V   L   
Sbjct: 267 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVC 326

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
            +L  +    +IH + +  GL+ ++ V   LI+ Y K G + DAR+ F + + + + ++W
Sbjct: 327 PQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF-QQMFITDVVSW 385

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N+++A Y Q  D  T    F  +++ GF PD  + +++ + +  +     S      +  
Sbjct: 386 NSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMR 445

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           R  L   +     ++    + G L+ A ++   +    D   W  L++  A +G A  A 
Sbjct: 446 RGWLMEDVVIGNAVVDMYAKLGLLDSAHKV-FEIILVKDVISWNTLITGYAQNGLASEAI 504

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           ++ K +       +    I+ N  + V      A V  + +  R+    GR  I+    +
Sbjct: 505 EVYKMM-------EECKEIIPNQGTWVSILPAYAHVGALQQGMRIH---GRV-IKTNLHL 553

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
            VF+A   +     D+Y K   L++       VP
Sbjct: 554 DVFVATCLI-----DVYGKCGRLVDAMSLFYQVP 582



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 139/339 (41%), Gaps = 45/339 (13%)

Query: 78  PLSLNIFLSMLR-----HPTLS------FLPNQRTLASLFKTCAS--------------- 111
           P S N+ L+  R      PTL       FLP +R    LF    S               
Sbjct: 60  PFSTNLTLASARWRHILAPTLKSRHTSKFLPPRRRPIQLFSAARSSPQFSSYGLGNQNEE 119

Query: 112 LSHAFLFGLS--------LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           +   FLF  S        LH+L +        F  + LV+ Y+       ++  FD+I +
Sbjct: 120 IDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQ 179

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFAD-MRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +DV  + +MI  +  N    +++  F   +  S++    Y     L+A   L      R 
Sbjct: 180 KDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRR 236

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH  A   G   NV V   LI  Y + G    AR +FD+ +   +  +WNAM++G  Q G
Sbjct: 237 IHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDD-MPFRDMGSWNAMISGLIQNG 295

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE--SEKWIERMKVRYKLEPGLE 340
           + +  L++   + + G    + +F+ V++ L      G+  +   I    +++ LE  L 
Sbjct: 296 NAAQALDVLDEMRLEGI---KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLF 352

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
               LI+   + G LEDA R A    F  D   W ++++
Sbjct: 353 VSNALINMYAKFGNLEDA-RKAFQQMFITDVVSWNSIIA 390


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/561 (34%), Positives = 297/561 (52%), Gaps = 6/561 (1%)

Query: 17  DPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           + R +H R + S   DR  +  N L+  Y K   L  + R+F+ +   N+ SWT L++  
Sbjct: 59  EGRRIH-RWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGF 117

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             S   +       R      LP++  L     +C + + A   G  +HS +    +   
Sbjct: 118 VQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGA-AKALSQGREIHSAAASCGMDSD 176

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +A+++ Y +  S   A  VF  + E++V+ +  MI  F QN    ++L  F  M+ 
Sbjct: 177 LVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQ 236

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +          L A   + A+E  + +H   V +GLD +++VG  L++ YGK G   D
Sbjct: 237 EGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDD 296

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR VFD ++   N ++WNAM+A Y Q G     L LF  +++ G  P++ +F+ +L    
Sbjct: 297 ARDVFD-SMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCS 355

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++G   ++      M+  + + P   H+ CLI  +GR+G+LE+AE +  AMP   DA +W
Sbjct: 356 HSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLW 415

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            +LL     H   D A++  +      P   +AY++++N+ + + +WDE A+VRK M+  
Sbjct: 416 TSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQA 475

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            VRK+ GRSWIE+  +VH F+AGD +H     I+  L  LM E    GY P    ++H++
Sbjct: 476 GVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSM 535

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + EK E L+YHSEKLA+AFG+ S  PR   L IVKNLR+C DCH + K+IS V  R I 
Sbjct: 536 EEEEKDEVLFYHSEKLAVAFGIASTPPR-TPLCIVKNLRVCSDCHSAIKFISGVEGRRIT 594

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+H F  G C+CGD W
Sbjct: 595 VRDSNRFHHFDRGECSCGDYW 615



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 4/213 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           +R  A   A+E+ R IH       LDR   +   L+D YGK G + +A+RVFD  +   N
Sbjct: 48  IRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDA-MQHKN 106

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
             +W  +MAG+ Q G     ++LFH +   G  PD  + L  + + C A  A    + I 
Sbjct: 107 VFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDS-CGAAKALSQGREIH 165

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
                  ++  L     +I+  G+ G + +A  +   MP E +   W  +++    +  A
Sbjct: 166 SAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMP-EKNVISWSTMIAAFCQNELA 224

Query: 388 DMASKMGKRLIDIN-PYDDSAYVIVANVLSGVG 419
           D A    K +       D   YV V +  + VG
Sbjct: 225 DEALLFFKLMQQEGMELDRITYVSVLDAYTSVG 257


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/548 (33%), Positives = 303/548 (55%), Gaps = 12/548 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           D + +N+++  Y +   +  +L+LF  +P  N++SWT +I     +  S  +L++F +ML
Sbjct: 158 DTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNML 217

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R    S     R    +   CA+ + AF  G+ +H L +KL    + +  ++L+ FY+  
Sbjct: 218 RCCIKS---TSRPFTCVITACAN-APAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANC 273

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           +   +++KVFDE     V  + A++ G++ N +  D+LS+F+ M  + +       +  L
Sbjct: 274 KRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGL 333

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            + + L  ++  + +HG AV  GL+ +  VG  L+  Y  +G V+DA  VF +     + 
Sbjct: 334 NSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKK-SI 392

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WN+++ G AQ G       +F  +      PDE +F  +L+A  + G   +  K    
Sbjct: 393 VSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYY 452

Query: 329 MKVRYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
           M      ++  ++HYTC++  +GR G+L++AE +   M  +P+  VW ALLS   +H   
Sbjct: 453 MSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDV 512

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
           D   K    + +++    +AYV+++N+ +  GRW  V+++R  MK   + K+ G SW+ +
Sbjct: 513 DRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVI 572

Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
           +GK H F +GD+ H     IY KL  L E+ + LGY P +   LH+V D +K E LWYHS
Sbjct: 573 RGKKHEFFSGDQPH--CSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHS 630

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           E+LA+AFGL++    G  + ++KNLR+C DCH   K IS VV REIV+RD  R+H F NG
Sbjct: 631 ERLAIAFGLINTV-EGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNG 689

Query: 568 SCTCGDLW 575
           +C+CGD W
Sbjct: 690 TCSCGDYW 697



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 176/411 (42%), Gaps = 29/411 (7%)

Query: 20  IVHARALKSSQADRSIYNN--LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           ++H +  +S        N   LI N+  S  +  +  +FN +PSP++  +T +I+ ++ S
Sbjct: 20  VIHGKCYRSFSVTVEFQNREVLICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRS 79

Query: 78  PL---SLNIFLSMLRHPTLSF---------LPNQRTLASLFKT---------CASLSHAF 116
                +LN+F  M     +S+           +  T   LF            A ++  F
Sbjct: 80  NRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCF 139

Query: 117 LFGL--SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
             G       L  ++ + D     +++VH Y +F   D+A K+F ++  ++V+ +  MI 
Sbjct: 140 RSGKVDQAERLFYQMPVKDTA-AWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMIC 198

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           G  QN R  ++L +F +M    + ST    +  + A A   A      +HG  +  G   
Sbjct: 199 GLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLY 258

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
              V   LI  Y     + D+R+VFDE +    ++ W A+++GY+        L +F  +
Sbjct: 259 EEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAV-WTALLSGYSLNKKHEDALSIFSGM 317

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
                 P++ +F + L + C+A    +  K +  + V+  LE        L+     +G 
Sbjct: 318 LRNSILPNQSTFASGLNS-CSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGN 376

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           + DA  + + + F+     W +++   A HG+   A  +  ++I +N   D
Sbjct: 377 VNDAVSVFIKI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPD 426



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 120/242 (49%), Gaps = 19/242 (7%)

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
           S+SH  + G    S S+ +   ++      L+  +   R  D A++VF+++    V  Y 
Sbjct: 16  SISHV-IHGKCYRSFSVTVEFQNR----EVLICNHLLSRRIDEAREVFNQVPSPHVSLYT 70

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
            MI G+ +++RLVD+L++F +M   DV S    +SG +       A++    +       
Sbjct: 71  KMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMP------ 124

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
             +R+V+  T +++G  ++G V  A R+F + + V ++ AWN+M+ GY Q G     L+L
Sbjct: 125 --ERSVVSWTAMVNGCFRSGKVDQAERLFYQ-MPVKDTAAWNSMVHGYLQFGKVDDALKL 181

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           F   +M G   +  S+  ++  L     +GE+    + M +R  ++     +TC+I+A  
Sbjct: 182 FK--QMPG--KNVISWTTMICGLDQNERSGEALDLFKNM-LRCCIKSTSRPFTCVITACA 236

Query: 351 RA 352
            A
Sbjct: 237 NA 238


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/545 (33%), Positives = 302/545 (55%), Gaps = 10/545 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHP 91
           + N L+  YSK + +  + +LF+ +P  + VS+  +IS ++       + ++F  +    
Sbjct: 287 VSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFREL---Q 343

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
             +F   Q   A++  + AS +  +  G  +H+ ++  +   +   G++LV  Y++    
Sbjct: 344 FTAFDRKQFPFATML-SIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKF 402

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           + A+ +F  +  R  V + AMI  + Q     + L +F  MR + V +     +  LRA+
Sbjct: 403 EEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRAS 462

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A +A++   + +H   + SG   NV  G+ L+D Y K G + DA + F E +   N ++W
Sbjct: 463 ASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQE-MPDRNIVSW 521

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NAM++ YAQ G+    L+ F  + + G  PD  SFL VL+A  ++GL  E       M  
Sbjct: 522 NAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQ 581

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            YKL+P  EHY  ++  + R+GR  +AE++   MP +PD  +W ++L+   IH   ++A 
Sbjct: 582 IYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELAR 641

Query: 392 KMGKRLIDINPYDDSA-YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
           +   +L ++    D+A YV ++N+ +  G+W+ V++V K M+DR V+K    SW+E+K +
Sbjct: 642 RAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHE 701

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
            H+F A DR H + E+I  K+  L +  E LGY P     LHN  ++ K E+L YHSE+L
Sbjct: 702 THMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERL 761

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AF L+S  P G  + ++KNLR C DCH + K IS++V REI VRD  R+H F +G C+
Sbjct: 762 AIAFALIS-TPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCS 820

Query: 571 CGDLW 575
           CGD W
Sbjct: 821 CGDFW 825



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 184/367 (50%), Gaps = 14/367 (3%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           N L+ +Y KSN L  + +LF  +P  + VS+ A+I+ +S   L   ++N+F+ M      
Sbjct: 188 NTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNS--- 244

Query: 94  SFLPNQRTLASLFKTCASLS-HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
              P + T A++   CA++     + G  +HS  +K +     F  +AL+ FYS+  S  
Sbjct: 245 GLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVI 302

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A+K+FDE+ E+D V Y  +I G+A + +   +  +F +++ +      +  +  L  A+
Sbjct: 303 DARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIAS 362

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
                E  R IH   +V+  D  ++VG  L+D Y K G   +A  +F  NL+  +++ W 
Sbjct: 363 NTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIF-TNLTHRSAVPWT 421

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES-EKWIERMKV 331
           AM++ Y Q+G     L+LF+ +       D+ +F ++L A  +A +A  S  K +    +
Sbjct: 422 AMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRA--SASIASLSLGKQLHSFII 479

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           +      +   + L+    + G ++DA +    MP + +   W A++S  A +G+A+   
Sbjct: 480 KSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGEAEATL 538

Query: 392 KMGKRLI 398
           K  K ++
Sbjct: 539 KSFKEMV 545



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 159/347 (45%), Gaps = 12/347 (3%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPTL 93
           N +I+ Y KS  L  + +LF+ +     V+WT LI  +S       +  +F+ M R  T 
Sbjct: 87  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 146

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLS-LHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
              P+  T  +L   C    H     ++ + +  +KL    +   G+ LV  Y +    D
Sbjct: 147 ---PDYVTFVTLLSGCNG--HEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLD 201

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
            A ++F E+ E D V Y AMI G++++     ++++F +M++S +  T +  +  L A  
Sbjct: 202 LACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANI 261

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
            L  +   + IH   + +    NV V   L+D Y K   V DAR++FDE +   + +++N
Sbjct: 262 GLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDE-MPEQDGVSYN 320

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
            +++GYA  G      +LF  L+   F   ++ F  +L+   N  L  E  + I    + 
Sbjct: 321 VIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT-LDWEMGRQIHAQTIV 379

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
              +  +     L+    + G+ E+AE I   +     A  W A++S
Sbjct: 380 TTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRS-AVPWTAMIS 425



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 117/270 (43%), Gaps = 11/270 (4%)

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           H      + ++  Y +  +   A+K+FD + ER  V +  +I G++Q ++  ++  +F  
Sbjct: 80  HKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQ 139

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+              L          Q   +    +  G D  +IVG  L+D Y K+  
Sbjct: 140 MQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 199

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  A ++F E +  ++S+++NAM+ GY++ G     + LF  ++  G  P E++F AVL 
Sbjct: 200 LDLACQLFKE-MPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLC 258

Query: 312 ALCNAGL----AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           A  N GL     G+    I    ++      +     L+    +   + DA ++   MP 
Sbjct: 259 A--NIGLDDIVLGQQ---IHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP- 312

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           E D   +  ++S  A  GK   A  + + L
Sbjct: 313 EQDGVSYNVIISGYAWDGKHKYAFDLFREL 342


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/545 (33%), Positives = 302/545 (55%), Gaps = 10/545 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHP 91
           + N L+  YSK + +  + +LF+ +P  + VS+  +IS ++       + ++F  +    
Sbjct: 247 VSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFREL---Q 303

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
             +F   Q   A++  + AS +  +  G  +H+ ++  +   +   G++LV  Y++    
Sbjct: 304 FTAFDRKQFPFATML-SIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKF 362

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           + A+ +F  +  R  V + AMI  + Q     + L +F  MR + V +     +  LRA+
Sbjct: 363 EEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRAS 422

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A +A++   + +H   + SG   NV  G+ L+D Y K G + DA + F E +   N ++W
Sbjct: 423 ASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQE-MPDRNIVSW 481

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NAM++ YAQ G+    L+ F  + + G  PD  SFL VL+A  ++GL  E       M  
Sbjct: 482 NAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQ 541

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            YKL+P  EHY  ++  + R+GR  +AE++   MP +PD  +W ++L+   IH   ++A 
Sbjct: 542 IYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELAR 601

Query: 392 KMGKRLIDINPYDDSA-YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
           +   +L ++    D+A YV ++N+ +  G+W+ V++V K M+DR V+K    SW+E+K +
Sbjct: 602 RAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHE 661

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
            H+F A DR H + E+I  K+  L +  E LGY P     LHN  ++ K E+L YHSE+L
Sbjct: 662 THMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERL 721

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AF L+S  P G  + ++KNLR C DCH + K IS++V REI VRD  R+H F +G C+
Sbjct: 722 AIAFALIS-TPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCS 780

Query: 571 CGDLW 575
           CGD W
Sbjct: 781 CGDFW 785



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 167/363 (46%), Gaps = 41/363 (11%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N L+ +Y KSN L  + +LF  +P  +  ++ A++ A        NI L  +        
Sbjct: 183 NTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCA--------NIGLDDI-------- 226

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
                               + G  +HS  +K +     F  +AL+ FYS+  S  +A+K
Sbjct: 227 --------------------VLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARK 266

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +FDE+ E+D V Y  +I G+A + +   +  +F +++ +      +  +  L  A+    
Sbjct: 267 LFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLD 326

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
            E  R IH   +V+  D  ++VG  L+D Y K G   +A  +F  NL+  +++ W AM++
Sbjct: 327 WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIF-TNLTHRSAVPWTAMIS 385

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES-EKWIERMKVRYKL 335
            Y Q+G     L+LF+ +       D+ +F ++L A  +A +A  S  K +    ++   
Sbjct: 386 AYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRA--SASIASLSLGKQLHSFIIKSGF 443

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
              +   + L+    + G ++DA +    MP + +   W A++S  A +G+A+   K  K
Sbjct: 444 MSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGEAEATLKSFK 502

Query: 396 RLI 398
            ++
Sbjct: 503 EMV 505



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 119/314 (37%), Gaps = 69/314 (21%)

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           H      + ++  Y +  +   A+K+FD + ER  V +  +I G++Q ++  ++  +F  
Sbjct: 75  HKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQ 134

Query: 192 MRSSD-----------------------------------------VGSTM---YCVSGA 207
           M+                                            VG+T+   YC S  
Sbjct: 135 MQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 194

Query: 208 LRAAAEL------------AAMEQCRV----------IHGHAVVSGLDRNVIVGTGLIDG 245
           L  A +L            AA+    +          IH   + +    NV V   L+D 
Sbjct: 195 LDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDF 254

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K   V DAR++FDE +   + +++N +++GYA  G      +LF  L+   F   ++ 
Sbjct: 255 YSKHDSVIDARKLFDE-MPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFP 313

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           F  +L+   N  L  E  + I    +    +  +     L+    + G+ E+AE I   +
Sbjct: 314 FATMLSIASNT-LDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNL 372

Query: 366 PFEPDAAVWRALLS 379
                A  W A++S
Sbjct: 373 THR-SAVPWTAMIS 385


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 189/535 (35%), Positives = 301/535 (56%), Gaps = 8/535 (1%)

Query: 44  SKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSNSP-LSLNIFLSMLRHPTLSFLPNQR 100
           S S  +S++ ++FN I +PNI +W  +I   A S +P  ++ +F  M  H   S LP+  
Sbjct: 80  SLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQM--HAASSILPDTH 137

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T   LFK  A L    L G  +HS+ ++       F  ++LVH YS F   ++A +VF+ 
Sbjct: 138 TFPFLFKAVAKLMDVSL-GEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEI 196

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           +  RD V + ++I GFA N    ++L+++ +M S  V    + +   L A  EL A+   
Sbjct: 197 MSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG 256

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
             +H + V  GL +N      L+D Y K G   DA++VFDE +   + ++W +++ G A 
Sbjct: 257 ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDE-MEERSVVSWTSLIVGLAV 315

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G  +  L+LF  LE +G  P E +F+ VL A  + G+  E   +  RMK  Y + P +E
Sbjct: 316 NGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIE 375

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           H+ C++  + RAG++ DA      MP  P+A +WR LL    IHG  ++       +  +
Sbjct: 376 HHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRL 435

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
                  +V+++N+ +   RW +V  VRK+M  + V+K  G S +E+K +V+ F+ GDR 
Sbjct: 436 EQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRS 495

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGA 520
           H ++E+ Y  LA++ +  +  GYVP    +L ++ + EK  AL +H+EK+A+AF LV+  
Sbjct: 496 HPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVN-T 554

Query: 521 PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           P G  +RI+KNLR+C DCH + K IS+V EREI+VRD +R+H F +GSC+C D W
Sbjct: 555 PPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 12/256 (4%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH-P 91
           R + N+L+  YS       + ++F  +   + V+W ++I+  + + +  N  L++ R   
Sbjct: 171 RFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMP-NEALTLYREMG 229

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
           +    P+  T+ SL   C  L  A   G  +H   +K+ L       +AL+  YS+  + 
Sbjct: 230 SEGVEPDGFTMVSLLSACVELG-ALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNF 288

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
            +A+KVFDE+ ER VV + ++IVG A N    ++L +F ++    +  +     G L A 
Sbjct: 289 RDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYAC 348

Query: 212 AELAAMEQC-----RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           +    +++      R+   + ++  ++ +      ++D   +AG V DA           
Sbjct: 349 SHCGMLDEGFNYFRRMKEEYGILPRIEHH----GCMVDLLCRAGKVGDAYDYIRNMPVPP 404

Query: 267 NSIAWNAMMAGYAQQG 282
           N++ W  ++      G
Sbjct: 405 NAVIWRTLLGACTIHG 420


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 311/559 (55%), Gaps = 11/559 (1%)

Query: 21  VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS-- 77
           +H  A+++  A   +I   L   YSK   +  +  +F+ +    +VSW +++  +  +  
Sbjct: 270 IHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329

Query: 78  -PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++ +F  ML        P   T+      CA L      G  +H    +L+L     
Sbjct: 330 PEKAIAVFEKMLEE---GIDPTGVTIMEALHACADLGD-LERGKFVHKFVDQLNLGSDIS 385

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  YS+ +  D A  +F+ +  R  V + AMI+G+AQN R+ ++L+ F++M+S  
Sbjct: 386 VMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLG 445

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +    + +   + A AEL+     + IHG  + S LD+N+ V T L+D Y K G +  AR
Sbjct: 446 MKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMAR 505

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           ++FD  +S  + I WNAM+ GY   G     L+LF  ++     P++ ++L+V++A  ++
Sbjct: 506 KLFDM-ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHS 564

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E  +  + MK  Y LEP ++HY  ++  +GRAGR+++A      MP  P   V+ A
Sbjct: 565 GLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGA 624

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
                 IH   ++  K  K+L ++NP +   +V++AN+ +   +W +VAEVRK M+ + +
Sbjct: 625 XXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGL 684

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S +E++ +VH F +G   H +++ IY  L EL+ E +  GYVP  + +L +V D
Sbjct: 685 KKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVED 743

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             + + L  HSEKLA+AFGL++ +P G T+ + KNLR+C DCH + KYIS V  REI+VR
Sbjct: 744 DVQEQLLNSHSEKLAIAFGLLNTSP-GTTIHVRKNLRVCGDCHNATKYISLVTGREIIVR 802

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D+ R+H F NG C+CGD W
Sbjct: 803 DMQRFHHFKNGICSCGDYW 821



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 157/360 (43%), Gaps = 20/360 (5%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSPLSLNI-FLSMLRHPTLSFL 96
           L++ +SK   ++ + R+F  I    + +  T L     NS L   + FL  +R+  +   
Sbjct: 87  LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK-- 144

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P       L K C   +     G  +H   +  S     F  + +V+ Y++ R  D+A K
Sbjct: 145 PVVYNFTYLLKVCGD-NADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYK 203

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +FD + ERD+V +  +I GF+QN     +L +   M+          +   L AAA++  
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +   + IHG+A+ +G  + V + T L D Y K G V  AR +FD  +     ++WN+MM 
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFD-GMDQKTVVSWNSMMD 322

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GY Q G+    + +F  +   G  P   + +  L A  + G   E  K++ +   +  L 
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDL-ERGKFVHKFVDQLNLG 381

Query: 337 PGLEHYTCLISAMGRAGRLEDAERI-------------AMAMPFEPDAAVWRALLSFSAI 383
             +     LIS   +  R++ A  I             AM + +  +  V  AL  FS +
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 164/350 (46%), Gaps = 28/350 (8%)

Query: 69  ALISAHSNSPLSLNIFLSM---LRHPTLS---FLPN---QRTLASLFKTCASLSHAFLFG 119
           A++ AH+ +PL  +        L   TLS    +P+   +   A L + C S+       
Sbjct: 10  AIVKAHNQTPLKSSSITIPSSPLPFHTLSERAHIPSHVYKHPAAVLLELCTSMK------ 63

Query: 120 LSLHS---LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
             LH    L +K  L+++    + LV  +S++ S + A +VF+ I ++    Y  M+ G+
Sbjct: 64  -ELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           A+NS L  +L+    MR  DV   +Y  +  L+   + A +++ + IHG  + +    NV
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANV 182

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
              TG+++ Y K   + DA ++FD  +   + ++WN ++AG++Q G     LEL   ++ 
Sbjct: 183 FAMTGVVNMYAKCRQIDDAYKMFDR-MPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD 241

Query: 297 RGFAPDEYSFLAVLTALCNAGL--AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
            G  PD  + + VL A  + GL   G+S   I    +R      +   T L     + G 
Sbjct: 242 EGQRPDSITLVTVLPAAADVGLLMVGKS---IHGYAIRAGFAKLVNISTALADMYSKCGS 298

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INP 402
           +E A  I   M  +     W +++     +G+ + A  + +++++  I+P
Sbjct: 299 VETARLIFDGMD-QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP 347


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 175/522 (33%), Positives = 285/522 (54%), Gaps = 10/522 (1%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
           ++F  +P  ++VSW  +I+ ++ + L       +      +  P+  TL+S+    A  +
Sbjct: 194 KIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAE-N 252

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
                G  +H  S++  L    +  S+L+  Y++     ++ +VF  + ERD + + ++I
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
            G  QN    + L  F  M  + +    Y  S  + A A L  +   + +HG+   +G D
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
            N+ + + L+D Y K G +  A+++FD  + + + ++W AM+ G A  G     +ELF  
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDR-MRLRDMVSWTAMIMGCALHGQAPDAIELFEQ 431

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           +E  G         AVLTA  + GL  E+ K+   M   + + PG+EHY  +   +GRAG
Sbjct: 432 METEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAG 484

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           RLE+A      M   P  ++W  LLS   +H   DMA K+  R+++++P +  AY+++AN
Sbjct: 485 RLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLAN 544

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + S   RW E A+ R  M+   +RK    SWIEVK KV+ F+AGD  H   E I   +  
Sbjct: 545 IYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEV 604

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L+E  E+ GYVP   E+ H+V + +K+  +  HSE+LA+ FG+++  P G T+R+ KNLR
Sbjct: 605 LVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIIN-TPAGMTIRVTKNLR 663

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +C DCH + K+IS++V REIVVRD +R+H F NG+C+CGD W
Sbjct: 664 VCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 198/428 (46%), Gaps = 42/428 (9%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           L + P    + +  + +HA+ LK   +     + L++ YS  NLL  SLRLFN I  P  
Sbjct: 12  LLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPA 71

Query: 65  VSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
           ++W ++I  +++  L   SL  F+ ML        P+     S+ K+CA L    L G S
Sbjct: 72  LAWKSVIRCYTSHGLPHQSLGSFIGML---ASGLYPDHNVFPSVLKSCALLMDLNL-GES 127

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFR-------------------------------- 149
           LH   +++ L    + G+AL++ YS+ R                                
Sbjct: 128 LHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL 187

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           S D+ +K+F+ + E+D+V +  +I G A+N    ++L +  +M  +++    + +S  L 
Sbjct: 188 SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLP 247

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
             AE   + + + IHG ++  GLD ++ V + LID Y K   V+D+ RVF   L+  + I
Sbjct: 248 LIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTL-LTERDGI 306

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +WN+++AG  Q G     L  F  + M    P  YSF +++ A C         K +   
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPA-CAHLTTLHLGKQLHGY 365

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
             R   +  +   + L+    + G +  A++I   M    D   W A++   A+HG+A  
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQAPD 424

Query: 390 ASKMGKRL 397
           A ++ +++
Sbjct: 425 AIELFEQM 432


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 306/545 (56%), Gaps = 15/545 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP----LSLNIFLSMLRH 90
           + N+L++ Y+K  +L  +L LF  +P  N+VSWT +++A +N+P     +L   + M R 
Sbjct: 109 VSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRD 168

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
              +   N  T +S+   C +         ++H+  +K+ L    F  S+L+  Y +   
Sbjct: 169 GVAA---NSYTFSSVLGACGTPG----VLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGD 221

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            D+ + VFDE+   D+V + ++I GFAQ+   V ++ +F  M+ S   +    ++  LRA
Sbjct: 222 LDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRA 281

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
              +  +E  R +H H  V   DR++I+   L+D Y K G + DA  +F   +   + I+
Sbjct: 282 CTGMVMLEVGRQVHAH--VLKYDRDLILHNALLDMYCKCGCLLDADALF-SRMHDRDVIS 338

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W+ M++G AQ G     L++F L++  G  P+  + + VL A  +AGL  +   +   M 
Sbjct: 339 WSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMD 398

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             + ++P  EH  C++  +GRAG+L++A +    M FEPD+ +WR LL    +H  A +A
Sbjct: 399 KLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLA 458

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
           S     ++ + P D  A ++++N+ + + +W    +  K M+D+ V+KE GRSWIE+   
Sbjct: 459 SYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKL 518

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
           VHVF+AG+  H  ++ I  +L  L+   + LGYVP  + +L ++G  +K + L YHSEKL
Sbjct: 519 VHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKL 578

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AFG ++ +  GK +RI+KNLRIC DCH   K +S+   + I++RD  R+H F +G C+
Sbjct: 579 AIAFGTMN-SMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCS 637

Query: 571 CGDLW 575
           CGD W
Sbjct: 638 CGDYW 642



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 120/281 (42%), Gaps = 34/281 (12%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA  +K    +D  + ++LI  Y K   L     +F+ + + ++V W ++I+  + S  
Sbjct: 193 MHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGD 252

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK----LSLHDKP 135
            +      +R     FL NQ TL S+ + C  +      G  +H+  LK    L LH+  
Sbjct: 253 GVGAMELFMRMKESGFLANQGTLTSVLRACTGMV-MLEVGRQVHAHVLKYDRDLILHN-- 309

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
               AL+  Y +     +A  +F  + +RDV+ +  MI G AQN R V++L VF  M++ 
Sbjct: 310 ----ALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAE 365

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG------TGLIDGYGKA 249
                   + G L A +    +E      G      +D+   +         ++D  G+A
Sbjct: 366 GPTPNNITMVGVLFACSHAGLVED-----GWHYFRSMDKLFGIQPEREHCNCMVDLLGRA 420

Query: 250 GIVSDARRVFDENLSVLNSIAW-----------NAMMAGYA 279
           G + +A +   E     +S+ W           NA +A YA
Sbjct: 421 GKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYA 461


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 195/601 (32%), Positives = 319/601 (53%), Gaps = 44/601 (7%)

Query: 13  NTSTDPRIVHARALKSSQADRSIYNNLITNY---SKSNLLSYSLRLFNHIPSPNIVSWTA 69
           + + D +I+HA  L++         + +  +   S +NLL Y++R+ + I +PN+  + A
Sbjct: 28  SNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNA 87

Query: 70  LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
           LI   S S    N F   ++      LP+  T   L K CA L +A + G+  H  ++K 
Sbjct: 88  LIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPM-GMQTHGQAIKH 146

Query: 130 SLHDKPFCGSALVHFYS-------------------------------RFRSPDNAKKVF 158
                 +  ++LVH Y+                               R     +A+++F
Sbjct: 147 GFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELF 206

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
           D + ER++V +  MI G+A+N+    ++  F  +++  V +    + G + + A L A+ 
Sbjct: 207 DRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALA 266

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
                H + + + L  N+I+GT ++D Y + G V  A  VF E L   + + W A++AG 
Sbjct: 267 MGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVF-EQLPEKDVLCWTALIAGL 325

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A  G     L  F  +  +GF P + +F AVLTA  +AG+     +  E MK  + +EP 
Sbjct: 326 AMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPR 385

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           LEHY C++  +GRAG+L  AE+  + MP +P+A +WRALL    IH   ++  ++GK L+
Sbjct: 386 LEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILL 445

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
           ++ P     YV+++N+ +   +W +V  +R++MKD+ VRK  G S IE+ GKVH F  GD
Sbjct: 446 EMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGD 505

Query: 459 RMH---ERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
           + H   E+ E I+  +  ++ + +  GYV    E + ++ + EK  AL  HSEKLA+A+G
Sbjct: 506 KTHPEIEKIERIWEDI--ILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYG 563

Query: 516 LVS-GAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           ++   AP    +RIVKNLR+C DCH + K IS+V E E++VRD NR+H F  G+C+C D 
Sbjct: 564 IMKIRAP--TPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDY 621

Query: 575 W 575
           W
Sbjct: 622 W 622


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 197/607 (32%), Positives = 311/607 (51%), Gaps = 49/607 (8%)

Query: 14  TSTDPRIVHARALKSSQADRSIYNNLITNY---SKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           T+   + +HA  +K+ Q    +    +  +   S    + Y+ + F+ I  PN  SW  +
Sbjct: 27  TTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTI 86

Query: 71  ISA----------HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
           I A          H NS  +L  F  ML    +   PN+ T   + K CA L+     G 
Sbjct: 87  IRALADSDDDDLFHVNSLEALLYFSHMLTDGLVE--PNKFTFPCVLKACAKLAR-IEEGK 143

Query: 121 SLHSLSLKLSLHDKPF-----------CGS---------------------ALVHFYSRF 148
            LH   +KL L    F           CG+                      ++  Y R 
Sbjct: 144 QLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRM 203

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
                ++++FD +  + VV +  MI G AQN    +++ +F DM+  DV      +   L
Sbjct: 204 GDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVL 263

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A + L A+E  + +H  A  + ++ + ++G+ LID Y K G +  A +VF+   +  N 
Sbjct: 264 PAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNP 323

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           I W+A++ G A  G     L+ F  ++  G  P +  ++ VL+A  +AGL  E       
Sbjct: 324 ITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYH 383

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M     L P +EHY C++  +GRAG LE+AE++ + MP +PD  + +ALL    +HG  +
Sbjct: 384 MVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIE 443

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           M  ++ K L+   P+D  +YV ++N+ +  G W+ V +VR  MK+  +RK+ G SWIE+ 
Sbjct: 444 MGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELD 503

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
           G +H FL  D  H R E I++ L E+ +    +GY P   ++L N+ ++EK+ AL YHSE
Sbjct: 504 GVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSE 563

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           K+A+AFGL+S  P+   L+IVKNLR+C DCH S K +S++  R+I+VRD  R+H F NGS
Sbjct: 564 KIAIAFGLISTRPQ-TPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGS 622

Query: 569 CTCGDLW 575
           C+C D W
Sbjct: 623 CSCMDYW 629


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/568 (32%), Positives = 314/568 (55%), Gaps = 25/568 (4%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + VH   + S  + D    N LI  Y+K   L  +  +F+     + V+W +LI+ ++ S
Sbjct: 342 KFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQS 401

Query: 78  PL---SLNIF--LSMLRHP-TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
                 L  F  + M R P +++F+     L S+F   A ++     G  +H   +K   
Sbjct: 402 GYYKEGLESFKMMKMERKPDSVTFV----LLLSIFSQLADINQ----GRGIHCDVIKFGF 453

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
             +   G++L+  Y++    D+  KVF  +   D++ +  +I              +  +
Sbjct: 454 EAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINE 513

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR+  +      V G L   + LA   Q + IHG+   SG + NV +G  LI+ Y K G 
Sbjct: 514 MRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGS 573

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + +  +VF + +   + + W A+++ +   G+    L+ F  +E+ G  PD  +F+A + 
Sbjct: 574 LENCIKVF-KYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIF 632

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  ++G+  E  ++ +RMK  Y LEP +EHY C++  + R+G L  AE   ++MP +PDA
Sbjct: 633 ACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDA 692

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           ++W ALLS     G  ++A ++ K+++++N  D   YV+V+N+ + +G+WD+V  VR  M
Sbjct: 693 SLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSM 752

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL----GYVPVW 487
           K + ++KE G SWIE++ +V+VF  GD+  E+    Y K+ +L+E   RL    GYV   
Sbjct: 753 KTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQ----YDKVKDLLEYLVRLMAKEGYVADL 808

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
              LH+V + +KR+ L  HSE+LA+AFGL++  P G  L ++KNLR+C DCH   KYI++
Sbjct: 809 QFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKP-GSPLLVMKNLRVCGDCHTVTKYITK 867

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +++REI+VRD NR+HRF +G+C+CGD W
Sbjct: 868 IMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 184/369 (49%), Gaps = 19/369 (5%)

Query: 19  RIVHARALKSSQADRSIYN-NLITNYSKSNLLSYSLRLFNHI-PSPNIVSWTALISAHSN 76
           R VH+  + S  +   I++  LI+ Y++      S+ +F  I P+ N+  W ++I A ++
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 77  SPLSLNI--FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           + L      + + +R   L   P+  T  S+  +CA +    L G  +H  ++++     
Sbjct: 99  NGLFTQALGYYTEMREKKLQ--PDAFTFPSVINSCARILDLEL-GCIVHEHAMEMGFESD 155

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            + G+AL+  YSRF   DNA+ VF+E+  RD V + ++I G+  N    D+L ++   R 
Sbjct: 156 LYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRM 215

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + +    + +S  L A   L A+++   +HG     G+  +VI+G GL+  Y K   + +
Sbjct: 216 TGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLRE 275

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           ARRVF + ++V +S+ WN M+ GYAQ G     ++LF  + + GF PD  S  + + A  
Sbjct: 276 ARRVFSK-MAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRA-- 331

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMPFEPD 370
             G +G+ +  + +   +Y +  G E  T     LI    + G L  A+ +      + D
Sbjct: 332 -CGQSGDLQ--VGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK-D 387

Query: 371 AAVWRALLS 379
           +  W +L++
Sbjct: 388 SVTWNSLIN 396



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 2/175 (1%)

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           S  L+  +      Q R +H   + SGL  +VI    LI  Y +      +  VF     
Sbjct: 23  SSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISP 82

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             N   WN+++      G  +  L  +  +  +   PD ++F +V+ + C   L  E   
Sbjct: 83  TNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINS-CARILDLELGC 141

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +    +    E  L     LI    R   L++A  +   M    D+  W +L+S
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMS-NRDSVSWNSLIS 195


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/565 (33%), Positives = 310/565 (54%), Gaps = 23/565 (4%)

Query: 23  ARALKSSQADRSI--YNNLITN----YSKSNLLSYSLRLFNHIP-SPNIVSWTALISA-- 73
           AR L SS   R    Y N++T     YSK+  L  +L +F  +  S N+VSWTA+I+   
Sbjct: 325 ARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCI 384

Query: 74  -HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFK-TCASLSHAFLFGLSLHSLSLKLSL 131
            + + PL+  +F S +R   ++  PN  T +++   + ASL         +H+  +K + 
Sbjct: 385 QNGDVPLAAALF-SRMREDGVA--PNDFTYSTILTASVASLPP------QIHAQVIKTNY 435

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                 G+AL+  YS+  + + A  +F  I ++DVV + AM+  +AQ      + ++F  
Sbjct: 436 ECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIK 495

Query: 192 MRSSDVGSTMYCVSGALRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           M    +    + +S  + A A+  A ++  R  H  ++       + V + L+  Y + G
Sbjct: 496 MTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKG 555

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A+ +F E  +  + ++WN+M++GYAQ G     L++F  +E  G   D  +FL+V+
Sbjct: 556 SIESAQCIF-ERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVI 614

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
               +AGL  E +++ + M   Y + P +EHY C++    RAG+L++A  +   M F   
Sbjct: 615 MGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAG 674

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             VWR LL    +H   ++     ++L+ + P+D + YV+++N+ S  G+W E  EVRK+
Sbjct: 675 PMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKL 734

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           M  ++V+KE G SWI++K KVH F+A D+ H  +E IY KL  +  + ++ GY P     
Sbjct: 735 MDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFA 794

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           LH V + +K   L  HSE+LALAFGL++  P G  L I KNLR+C DCH   K +S++ +
Sbjct: 795 LHEVAEEQKEAMLAMHSERLALAFGLIA-TPPGAPLHIFKNLRVCGDCHTVIKMVSKIED 853

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REIV+RD +R+H F +G C+CGD W
Sbjct: 854 REIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 165/364 (45%), Gaps = 7/364 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
           + D  +  +L+  Y K + +    ++F  +P  N+V+WT+L++ +       ++     R
Sbjct: 136 RGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFR 195

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                  PN  T AS+    AS     L G  +H+ S+K       F  ++L++ Y++  
Sbjct: 196 MRAEGVWPNSVTFASVLSVVASQGMVDL-GRRVHAQSVKFGCCSTVFVCNSLMNMYAKCG 254

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
             + A+ VF  +  RD+V +  ++ G   N   +++L +F D RSS    T    +  ++
Sbjct: 255 LVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIK 314

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
             A +  +   R +H   +  G      V T L+D Y KAG + +A  +F       N +
Sbjct: 315 LCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVV 374

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +W AM+ G  Q GD      LF  +   G AP+++++  +LTA   A L  +    +  +
Sbjct: 375 SWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASV-ASLPPQIHAQV--I 431

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
           K  Y+    +   T L+++  +    E+A  I   M  + D   W A+L+  A  G +D 
Sbjct: 432 KTNYECTSIVG--TALLASYSKLCNTEEALSI-FKMIDQKDVVSWSAMLTCYAQAGDSDG 488

Query: 390 ASKM 393
           A+ +
Sbjct: 489 ATNI 492


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/555 (34%), Positives = 311/555 (56%), Gaps = 10/555 (1%)

Query: 25  ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSL 81
           A++    D + +N +I  Y  +  +  +L+LF  +PS +++SW+++I+    +  S  +L
Sbjct: 173 AMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQAL 232

Query: 82  NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LHDKPFCGSA 140
            +F  M+       L +   +  L  + A+   A+  G+ +H    KL   H   F  ++
Sbjct: 233 VLFRDMVASGVC--LSSGVLVCGL--SAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSAS 288

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           LV FY+  +  + A +VF E+  + VV + A++ G+  N +  ++L VF +M   DV   
Sbjct: 289 LVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPN 348

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
               + AL +   L  +E+ +VIH  AV  GL+    VG  L+  Y K G VSDA  VF 
Sbjct: 349 ESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVF- 407

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
           + ++  N ++WN+++ G AQ G     L LF+ +   G  PD  +   +L+A  ++G+  
Sbjct: 408 KGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQ 467

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           ++  +      +  +   +EHYT ++  +GR G LE+AE + M+MP + ++ VW ALLS 
Sbjct: 468 KARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSA 527

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
              H   D+A +   ++ +I P   +AYV+++N+ +   RW EVA +R+ MK   V K+ 
Sbjct: 528 CRKHSNLDLAKRAANQIFEIEPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKP 587

Query: 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKR 500
           G SW+ +KG+ H FL+ DR H   E IY KL  L  + + LGYVP     LH+V   +K 
Sbjct: 588 GSSWLTLKGQKHKFLSADRSHPLAEKIYQKLEWLGVKLKELGYVPDQQFALHDVETEQKE 647

Query: 501 EALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNR 560
           E L YHSE+LA+AFGL+S    G  + ++KNLR+C DCH + K ++++V+REIVVRD +R
Sbjct: 648 EMLSYHSERLAIAFGLLSTV-EGSAITVMKNLRVCGDCHNAIKLMAKIVDREIVVRDSSR 706

Query: 561 YHRFLNGSCTCGDLW 575
           +H F NG C+CGD W
Sbjct: 707 FHDFKNGICSCGDYW 721



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 21/150 (14%)

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           RS D A+ +FD+I    V  Y  M+  +AQN RL +++ +F  +   DV S    + G L
Sbjct: 69  RSLDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCL 128

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVG-TGLIDGYGKAGIVSDARRVF------DE 261
                        ++    +   + R  +V  T L+DG  + GIV +A  +F      D 
Sbjct: 129 HCG---------DIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDR 179

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           +++     AWNAM+ GY   G     L+LF
Sbjct: 180 DVA-----AWNAMIHGYCSNGRVDDALQLF 204



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 126/290 (43%), Gaps = 27/290 (9%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           + ++H Y++      A  +F  I  +DVV + ++I G      +V +  +F +M    V 
Sbjct: 90  TIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFDEMPRRTVV 149

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           S    V G LR    L  +++   +     +  +DR+V     +I GY   G V DA ++
Sbjct: 150 SWTTLVDGLLR----LGIVQEAETLFW--AMEPMDRDVAAWNAMIHGYCSNGRVDDALQL 203

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F + +   + I+W++M+AG    G     L LF  +   G        L+    +C    
Sbjct: 204 FCQ-MPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVC------LSSGVLVCGLSA 256

Query: 319 AGESEKWIERMKVR---YKLEPGLEHYTCLISA-----MGRAGRLEDAERIAMAMPFEPD 370
           A +   W   +++    +KL  G  H+   +SA          ++E A R+   + ++  
Sbjct: 257 AAKIPAWRVGIQIHCSVFKL--GDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYK-S 313

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGV 418
             +W ALL+   ++ K   A ++   +  ID+ P ++S++    N   G+
Sbjct: 314 VVIWTALLTGYGLNDKHREALEVFGEMMRIDVVP-NESSFTSALNSCCGL 362


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 166/424 (39%), Positives = 257/424 (60%), Gaps = 2/424 (0%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           D+A+K+FD + ER+++ + AMI G+ +  R +D+L VF  MR+  +    +  + A+ A 
Sbjct: 178 DDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVAC 237

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
                + + R +H     SG+  +  + T ++D Y K G V +A  VF + L      +W
Sbjct: 238 TGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVF-KVLPTKGLTSW 296

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N M+ G A  G     +ELFH +E    APD+ + + VLTA  + G+  +   +   +  
Sbjct: 297 NCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQ 356

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           RY +EP +EHY C++   GRAG L++A+++   MP EPD  V  AL     IH   D+  
Sbjct: 357 RYGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGE 416

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
            +G R+I+++P +   YV++AN+L+  G+W +VA+VR++M +R V KE GRS IE+ G+V
Sbjct: 417 AIGWRVIELDPQNSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEV 476

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
             F  G   H + ++I+  + ++M +    GY+P   ++LH++ + EK   L YHSEKLA
Sbjct: 477 CEFQCGSLCHAQEKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLA 536

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL+   P G T+RI KNLR+CRDCHE+ K+ISRV EREIVVRD NR+H F +G+C+C
Sbjct: 537 IAFGLLRTRP-GDTVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSC 595

Query: 572 GDLW 575
            D W
Sbjct: 596 RDYW 599



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 4/237 (1%)

Query: 28  SSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFL 85
           SS  D  +  +  ++    +  L+  + +LF+ +P  N++SW A+IS +  +   L+   
Sbjct: 154 SSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALE 213

Query: 86  SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY 145
              +   L    N    AS    C   +     G  +H    +  +       +A+V  Y
Sbjct: 214 VFDQMRALGIEGNGFVAASAVVACTG-AGVLARGREVHRWVEQSGITMDEKLATAVVDMY 272

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205
            +  S + A  VF  +  + +  +  MI G A + R  D++ +F +M   DV      + 
Sbjct: 273 CKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLV 332

Query: 206 GALRAAAELAAMEQCRVIHGHAVVS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
             L A A    +        + V   G++  +     ++D +G+AG++ +A++V D+
Sbjct: 333 NVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDD 389


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/544 (34%), Positives = 301/544 (55%), Gaps = 4/544 (0%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D  + N ++  + K  ++  + RLF+ +P  NI+SW  +I    ++      F   L   
Sbjct: 165 DEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMW 224

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                   R   ++ +  A L   F  G  LHS SLK  +    F   AL+  YS+  S 
Sbjct: 225 QXFSDAGSRMFVTMIRASAGLGLIFA-GRQLHSCSLKTGVGGDVFVACALIDMYSKCGSI 283

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           ++A+ VFD++ E+  V + ++I G+A +    ++LS++ +MR S V    +  S  +R  
Sbjct: 284 EDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRIC 343

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A LA++E  +  H   V  G   +++  T L+D Y K G + DA+ VFD  +   N I+W
Sbjct: 344 ARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFD-MMPHKNVISW 402

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NA++AGY   G     +E+F  +   G  P+  +FLAVL+A   +GL+    +  E M  
Sbjct: 403 NALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSR 462

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            +K++P   HY C+I  +GR G L++A  +    PF+P   +W ALL+   +H   ++  
Sbjct: 463 DHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGK 522

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              ++L  + P   S YV++ N+ +  GR +E A V + +K R +R     SWIE+K + 
Sbjct: 523 FAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQP 582

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           + F++GD+ H ++++IY KL ELM E  + GYVP    +L +V ++E+R  L YHSEKLA
Sbjct: 583 YGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQXKFLLPDVDEQEER-VLLYHSEKLA 641

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL++ +     L+IV++ RIC DCH + K I+ V  REIVVRD +R+H F +GSC+C
Sbjct: 642 IAFGLINTSD-WTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSC 700

Query: 572 GDLW 575
           GD W
Sbjct: 701 GDYW 704



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 5/198 (2%)

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           D+ S  Y     + A   L ++   + +  + + SGLD +  +   ++  + K G++ DA
Sbjct: 128 DMDSETY--DALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDA 185

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           RR+FDE +   N ++WN ++ G    GD      LF ++           F+ ++ A   
Sbjct: 186 RRLFDE-MPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAG 244

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            GL     + +    ++  +   +     LI    + G +EDA+ +   MP E     W 
Sbjct: 245 LGLIFAGRQ-LHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP-EKTTVGWN 302

Query: 376 ALLSFSAIHGKADMASKM 393
           ++++  A+HG ++ A  M
Sbjct: 303 SIIAGYALHGYSEEALSM 320


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 190/561 (33%), Positives = 319/561 (56%), Gaps = 11/561 (1%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SN 76
           ++H   +K   + +  + N LI  Y+K   L  + ++F  +   ++VSW ++I+A+  ++
Sbjct: 294 LIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQND 353

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LHDKP 135
            P++   F   ++   L   P+  TL SL  + A+ S  +    S+H   ++   L +  
Sbjct: 354 DPVTARGFFFKMQLNGLE--PDLLTLVSL-ASIAAQSRDYKNSRSVHGFIMRRGWLMEAV 410

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             G+A++  Y++    D+A KVF+ I  +DVV +  +I G+ QN    +++ V+  M   
Sbjct: 411 VIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEEC 470

Query: 196 -DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            ++          L A A + A++Q   IHGH + + L  +V VGT LID YGK G + D
Sbjct: 471 REIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVD 530

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F + +   +S+ WNA+++ +   G     L+LF  ++  G  PD  +F+++L+A  
Sbjct: 531 AMCLFYQ-VPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACS 589

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++GL  E  KW   +   Y ++P L+HY C++  +GRAG LE A      MP  PDA++W
Sbjct: 590 HSGLVDEG-KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIW 648

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    IHG  ++      RL +++  +   YV+++N+ + VG+W+ V +VR + ++R
Sbjct: 649 GALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARER 708

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++K  G S IEV  +V +F  G++ H + ++IY +L  L  + + LGY+P +  +L +V
Sbjct: 709 GLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDV 768

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + EK   L  HSE+LA+AFG++S  P+   +RI KNLR+C DCH + K+ISR+ EREIV
Sbjct: 769 EEDEKEHILTSHSERLAIAFGIISTPPK-SAIRIFKNLRVCGDCHNATKFISRITEREIV 827

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD  R+H F NG C+CGD W
Sbjct: 828 VRDSKRFHHFKNGICSCGDYW 848



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 162/361 (44%), Gaps = 23/361 (6%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSF 95
           L+  Y+    +S S   F+ I   ++ +W ++ISA+  +     +++ F  +L      F
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLL--VTKF 171

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
             +  T   + K C +L      G  +H    KL      F  ++L+H YSRF     A+
Sbjct: 172 QADFYTFPPVLKACQTLVD----GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIAR 227

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            +FD++  RD+  + AMI G  QN     +L V  +MR   +      V+  L   A+L 
Sbjct: 228 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLG 287

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            +    +IH + +  GL+  + V   LI+ Y K G + DA++VF + + + + ++WN+++
Sbjct: 288 DISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVF-QQMFLRDVVSWNSII 346

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV---- 331
           A Y Q  D  T    F  +++ G  PD      +LT +  A +A +S  +     V    
Sbjct: 347 AAYEQNDDPVTARGFFFKMQLNGLEPD------LLTLVSLASIAAQSRDYKNSRSVHGFI 400

Query: 332 --RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
             R  L   +     ++    + G ++ A ++   +P + D   W  L+S    +G A  
Sbjct: 401 MRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK-DVVSWNTLISGYTQNGLASE 459

Query: 390 A 390
           A
Sbjct: 460 A 460



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 11/277 (3%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           SLF +C       L    LH+L +        F    LV+ Y+       ++  FD+I+ 
Sbjct: 81  SLFDSCTKT----LLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQR 136

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFAD-MRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +DV  + +MI  + +N    +++  F   +  +   +  Y     L+A   L      R 
Sbjct: 137 KDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLV---DGRK 193

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH      G   +V V   LI  Y + G V  AR +FD+ +   +  +WNAM++G  Q G
Sbjct: 194 IHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDD-MPFRDMGSWNAMISGLIQNG 252

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
           + +  L++   + + G   D  +  ++L      G    +   I    +++ LE  L   
Sbjct: 253 NAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDI-STATLIHLYVIKHGLEFELFVS 311

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             LI+   + G L DA+++   M F  D   W ++++
Sbjct: 312 NALINMYAKFGNLGDAQKVFQQM-FLRDVVSWNSIIA 347


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 198/591 (33%), Positives = 309/591 (52%), Gaps = 42/591 (7%)

Query: 21  VHARALKSS---QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +HA  L++      DR++   L   Y+ S  L  SL L      P  + +T+ I AHS+ 
Sbjct: 308 LHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSR 367

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
              L     +        LP   TL++    C  LS     G +LH  + KL+L    + 
Sbjct: 368 GHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLSP----GRALHGYAFKLALAGDSYV 423

Query: 138 GSALVHFYSR--------------------------------FRSPDNAKKVFDEIRERD 165
            +AL+  Y+R                                  + D+A+ +FD +  +D
Sbjct: 424 ATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKD 483

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
            VC+ AMI G+ Q+ R  ++L +F  M  S V      V   L A A+L  +E  + +H 
Sbjct: 484 FVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHS 543

Query: 226 HAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           +   S  +  +V VGT LID Y K G + DA  VF   +   + + WNAM+ GYA  GD 
Sbjct: 544 YVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVF-HGIGDKDIVVWNAMINGYAMHGDS 602

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              LE+F     +G  P + +F+ +L A  ++G+  E  ++ + M+  Y ++P +EHY C
Sbjct: 603 RKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGC 662

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  +GRAG +++A  +  +M   PDA +W +LL+   +H    +  ++   L+     +
Sbjct: 663 MVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLAN 722

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
              Y++++N+ + VG W EVA VR +MK   ++KE G S IE+  +V+ F+AGD  H RT
Sbjct: 723 SGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRT 782

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
           ++IY  L ++    +  G+VP  + +LH++ +  K +AL  HSEKLALAFGL+S  P G 
Sbjct: 783 DEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQP-GA 841

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           T++IVKNLR C DCH   K ISR+  R+IV RD NR+H F++GSC+CGD W
Sbjct: 842 TIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 136/324 (41%), Gaps = 43/324 (13%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA--LVHFYSRFRSPDNAKKVFDEI 161
           SL  +C++   A      LH+  L+  L D      A  L   Y+     D +  +    
Sbjct: 294 SLLTSCSTARRA----AELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRT 349

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
           R+   + Y + I   +     + +L++ +DM +  +  T + +S +L A   L+     R
Sbjct: 350 RDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGLSP---GR 406

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD--------------------- 260
            +HG+A    L  +  V T L+  Y +AG  + AR +FD                     
Sbjct: 407 ALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADM 466

Query: 261 ----------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
                     + L   + + WNAM+ GY Q G  +  L LF  +   G  PDE + + VL
Sbjct: 467 GALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVL 526

Query: 311 TALCNAGLAGESEKWIER-MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           +A+   G   ES KW+   +K   +++  +   T LI    + G L DA  +   +  + 
Sbjct: 527 SAVAQLGTV-ESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIG-DK 584

Query: 370 DAAVWRALLSFSAIHGKADMASKM 393
           D  VW A+++  A+HG +  A +M
Sbjct: 585 DIVVWNAMINGYAMHGDSRKALEM 608


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 187/556 (33%), Positives = 302/556 (54%), Gaps = 5/556 (0%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   L++  ++  ++   L+  YSK   +S +  +F+ +    +VSW ++I  +  S  
Sbjct: 153 VHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGD 212

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +    L   +       P   T+      CA L      G  +H L  +L L       +
Sbjct: 213 AEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGD-LERGKFVHKLVDQLKLDSDVSVMN 271

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +L+  YS+ +  D A  +F  +R + +V + AMI+G+AQN  + ++L+ F +M+S ++  
Sbjct: 272 SLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKP 331

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             + +   + A AEL+   Q + IHG  +   LD+NV V T L+D Y K G +  AR++F
Sbjct: 332 DSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLF 391

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D  ++  + I WNAM+ GY   G   T +ELF  ++     P++ +FL  L+A  ++GL 
Sbjct: 392 DM-MNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLV 450

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E   + E MK  Y +EP ++HY  ++  +GRAGRL  A      MP +P   V+ A+L 
Sbjct: 451 EEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLG 510

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IH   D+  K    +  +NP D   +V++AN+ +    W +VA+VR +M+   ++K 
Sbjct: 511 ACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKT 570

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S +E+  +VH F +G   H +++ IY+ L  L++E    GYVP  +  +H+V D  K
Sbjct: 571 PGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNS-IHDVEDDVK 629

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
            + L  HSEKLA+AFGL++    G  + I KNLR+C DCH + KYIS V  REI+VRD++
Sbjct: 630 VQLLNTHSEKLAIAFGLLN-TSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMH 688

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 689 RFHLFKDGVCSCGDYW 704



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 166/359 (46%), Gaps = 4/359 (1%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           ++  Y+K   ++ +  +F+ +P  ++V W  +IS ++ +  +    + +LR       P+
Sbjct: 71  VVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPD 130

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
             T+ S+    A  +     G+++H   L+          +ALV  YS+  S   A+ +F
Sbjct: 131 SITIVSILPAVAD-TRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIF 189

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
           D +  R VV + +MI G+ Q+     ++ +F  M    V  T   V GAL A A+L  +E
Sbjct: 190 DGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLE 249

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           + + +H       LD +V V   LI  Y K   V  A  +F +NL     ++WNAM+ GY
Sbjct: 250 RGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIF-KNLRNKTLVSWNAMILGY 308

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           AQ G  +  L  F  ++ R   PD ++ ++V+ AL    +  ++ KWI  + +R  L+  
Sbjct: 309 AQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQA-KWIHGLVIRRFLDKN 367

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           +   T L+    + G +  A ++   M        W A++     HG    + ++ K +
Sbjct: 368 VFVMTALVDMYAKCGAIHTARKL-FDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEM 425



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 142/327 (43%), Gaps = 18/327 (5%)

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           A S+S  S   F S ++H ++   P       L K C   S     G  +H   +     
Sbjct: 6   AKSSSLDSALSFFSRMKHDSVR--PVVYNFTYLLKLCGDNSD-LKRGKEIHGSVITSGFS 62

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              F  + +V+ Y++ R  ++A  +FD + ERD+VC+  MI G+AQN     +L +   M
Sbjct: 63  WNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRM 122

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
                      +   L A A+   +     +HG+ + +G +  V V T L+D Y K G V
Sbjct: 123 SEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSV 182

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           S AR +FD  +     ++WN+M+ GY Q GD    + +F  +   G  P   + +  L A
Sbjct: 183 SIARVIFD-GMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHA 241

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI----------- 361
             + G   E  K++ ++  + KL+  +     LIS   +  R++ A  I           
Sbjct: 242 CADLGDL-ERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 362 --AMAMPFEPDAAVWRALLSFSAIHGK 386
             AM + +  +  V  AL +F  +  +
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQSR 327



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 108/233 (46%), Gaps = 13/233 (5%)

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           M+ G+A++S L  +LS F+ M+   V   +Y  +  L+   + + +++ + IHG  + SG
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
              N+   TG+++ Y K   ++DA  +FD  +   + + WN M++GYAQ G     L L 
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDR-MPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNA-----GLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
             +   G  PD  + +++L A+ +      G+A      +    +R   E  +   T L+
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMA------VHGYVLRAGFESLVNVSTALV 173

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
               + G +  A  I   M        W +++      G A+ A  + ++++D
Sbjct: 174 DMYSKCGSVSIARVIFDGMDHRT-VVSWNSMIDGYVQSGDAEGAMLIFQKMLD 225


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/557 (31%), Positives = 302/557 (54%), Gaps = 40/557 (7%)

Query: 21  VHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H R +  +        N +T+ Y++   +  + RLF+ +   N+V+W  +IS       
Sbjct: 177 IHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG------ 230

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                          +L N++      + C  L H               +L       S
Sbjct: 231 ---------------YLKNRQP-----EKCIDLFHEMQVS----------NLKPDQVTAS 260

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +++  Y +    D A+KVF EIRE+D VC+  MIVG AQN +  D+L +F++M   +   
Sbjct: 261 SVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARP 320

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             Y +S  + + A+LA++   +V+HG A + G++ +++V + L+D Y K G+  DA  +F
Sbjct: 321 DGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIF 380

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
              +   N ++WN+M+ GYA  G     L L+  +      PD  +F+ VL+A  +AGL 
Sbjct: 381 -STMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLV 439

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E +++   M  ++ LEP  +HY C+++  GR+G ++ A  +  +M  EP++ +W  +LS
Sbjct: 440 EEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLS 499

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              + G         + LI++NP++   Y++++N+ +  GRW +VA +R +MK + V+K 
Sbjct: 500 VCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKF 559

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
              SWIE+  +VH F+A DR H   + I+ +L  L+ + +  G+ P  + +LH+ G+ EK
Sbjct: 560 SAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDEK 619

Query: 500 REALWYHSEKLALAFGLVSGAPRGKT-LRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
            E++ YHSEKLALA+GL+   P G T +RI+KN+R C DCH   K++S +  R +++RD 
Sbjct: 620 LESINYHSEKLALAYGLIK-KPHGVTPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDS 678

Query: 559 NRYHRFLNGSCTCGDLW 575
           NR+H F+ G C+C D W
Sbjct: 679 NRFHHFVEGKCSCKDYW 695



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 146/313 (46%), Gaps = 29/313 (9%)

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           L  P  +F+ N+  L +L+     +SHA         L  +++  D  F  +A++  Y++
Sbjct: 52  LFKPNDTFIHNR--LLNLYAKSGEISHA-------RKLFDEMTQRDN-FSWNAMLSLYAK 101

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
               ++ + +FD +  RD V Y  +I GFA N R   +L VF  M+   +  T Y     
Sbjct: 102 SGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSV 161

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A  +L  + + + IHG  ++  L  NV V   L D Y + G +  ARR+FD  + + N
Sbjct: 162 LNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDR-MVIRN 220

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            + WN M++GY +       ++LFH +++    PD+ +  +VL A   AG   E+ K   
Sbjct: 221 VVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFG 280

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE---PDAAVWRALLSFSA-- 382
             ++R K E     +T +I    + G+ EDA  +   M  E   PD     +++S  A  
Sbjct: 281 --EIREKDEVC---WTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKL 335

Query: 383 --------IHGKA 387
                   +HGKA
Sbjct: 336 ASLYHGQVVHGKA 348



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 180/422 (42%), Gaps = 50/422 (11%)

Query: 20  IVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           I HAR L  + +Q D   +N +++ Y+KS L+     +F+++PS + VS+  +IS  + +
Sbjct: 74  ISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGN 133

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                +L +FL M +       P + T  S+   C  L      G  +H   +  +L   
Sbjct: 134 GRGGPALGVFLRMQKE---GLKPTEYTHVSVLNACTQLLD-LRRGKQIHGRIIICNLGGN 189

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  +AL   Y+R    D A+++FD +  R+VV +  MI G+ +N +    + +F +M+ 
Sbjct: 190 VFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQ- 248

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                                             VS L  + +  + ++  Y +AG + +
Sbjct: 249 ----------------------------------VSNLKPDQVTASSVLGAYIQAGYIDE 274

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR+VF E +   + + W  M+ G AQ G +   L LF  + +    PD Y+  +V+++  
Sbjct: 275 ARKVFGE-IREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSC- 332

Query: 315 NAGLAGESEKWIERMKV-RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            A LA      +   K     +   L   + L+    + G   DA  I   M    +   
Sbjct: 333 -AKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTR-NVVS 390

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDEVAEVRKVMK 432
           W +++   A++G+   A  + + +++ N   DS  +V V +     G  +E  E    M 
Sbjct: 391 WNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMS 450

Query: 433 DR 434
           D+
Sbjct: 451 DQ 452



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 142/316 (44%), Gaps = 22/316 (6%)

Query: 6   NQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV 65
           N+QP+      D  + H   + + + D+   ++++  Y ++  +  + ++F  I   + V
Sbjct: 234 NRQPEK---CID--LFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEV 288

Query: 66  SWTALI---SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
            WT +I   + +     +L +F  ML     +  P+  T++S+  +CA L+ +   G  +
Sbjct: 289 CWTIMIVGCAQNGKEEDALLLFSEMLLE---NARPDGYTISSVVSSCAKLA-SLYHGQVV 344

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           H  +  + ++D     SALV  Y +     +A  +F  ++ R+VV + +MI G+A N + 
Sbjct: 345 HGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQD 404

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ-----CRVIHGHAVVSGLDRNVI 237
           +++LS++ +M   ++        G L A      +E+     C +   H +    D    
Sbjct: 405 LEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYAC 464

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-QSTVLELFHLLEM 296
               +++ +G++G +  A  +        NS+ W  +++    +GD +   +    L+E+
Sbjct: 465 ----MVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIEL 520

Query: 297 RGFAPDEYSFLAVLTA 312
             F    Y  L+ + A
Sbjct: 521 NPFNAVPYIMLSNMYA 536


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 185/527 (35%), Positives = 288/527 (54%), Gaps = 3/527 (0%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKT 108
           LS+++  F+ I +P+   W A+I     SP   N F       + S   +  T + + K 
Sbjct: 55  LSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKA 114

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
           CA +  A L  + +H+  ++         G+ L+  Y++    D+A+KVFDE+ +RD+  
Sbjct: 115 CARVL-ARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIAS 173

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           + A+I GFAQ S+  ++LS+F  M           V GAL A A+L   ++   IHG+  
Sbjct: 174 WNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIK 233

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
           V   D N  V   +ID Y K G V  A  VF+      + + WN M+  +A  G+    L
Sbjct: 234 VERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKAL 293

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
           ELF  ++  G +PD+ S+LAVL A  + GL  E  +    M+    ++P ++HY  ++  
Sbjct: 294 ELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSME-NCGVKPNVKHYGSVVDL 352

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
           +GRAGRL +A  I  +MP  PD  +W+ LL  S  H   ++A  + ++L+++       +
Sbjct: 353 LGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDF 412

Query: 409 VIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIY 468
           V+++NV +   RW +V  VR+ MK+R V+K  G S+IE  G +H F   D+ HE   +IY
Sbjct: 413 VLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIY 472

Query: 469 TKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRI 528
            KL E+    +  GYV     +LH++G+ +K   L +HSEKLA+AFGL+S    G  +++
Sbjct: 473 AKLDEIRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLIS-TSEGTPIQV 531

Query: 529 VKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +KNLRIC DCH   K IS++ +REI+VRD  R+HRF  G C+C D W
Sbjct: 532 IKNLRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 6/250 (2%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH 90
           AD  +   L+  Y+K   +  + ++F+ +   +I SW ALIS  +             R 
Sbjct: 138 ADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRM 197

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD--KPFCGSALVHFYSRF 148
               F PN+ ++      CA L   F  G  +H   +K+   D     C + ++  Y++ 
Sbjct: 198 EIDGFKPNEISVLGALSACAQLGD-FKEGEKIHGY-IKVERFDMNAQVC-NVVIDMYAKC 254

Query: 149 RSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
              D A  VF+ +  R D+V +  MI+ FA +     +L +F  M  S V          
Sbjct: 255 GFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAV 314

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A      +E+   +       G+  NV     ++D  G+AG + +A  + +   +V +
Sbjct: 315 LCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPD 374

Query: 268 SIAWNAMMAG 277
            + W  ++  
Sbjct: 375 IVLWQTLLGA 384


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 302/556 (54%), Gaps = 10/556 (1%)

Query: 25  ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSL 81
           A+     D + +N ++  Y  +  ++ +LRLF  +PS +++SWT++I     +  S  +L
Sbjct: 177 AMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQAL 236

Query: 82  NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD--KPFCGS 139
             F +M+    +    +  TL       A +   F  G+ +H    K         F  +
Sbjct: 237 FFFKNMVGFSGVGI--SSTTLVCGLSAAAKILD-FYAGIQIHCCMFKFGFCCGLDEFVSA 293

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           +LV FY+  +   +A KVF E   ++VV + A++ G   N + V++L VF++M   +V  
Sbjct: 294 SLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVP 353

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                + AL +   L  +E+ RVIH   +  GL+  V  G  L+  Y K G + DA  VF
Sbjct: 354 NESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVF 413

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            + +   N ++WN+++ G AQ G  +  L LF  +   G   DE +   +L+A   +G+ 
Sbjct: 414 -KGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGML 472

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            ++  +      +  ++  +EHY C++  +GR G +E+AE +A +MP E ++ VW  LLS
Sbjct: 473 QKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLS 532

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +H   D+A +  KR+ ++ P   +AYV+++N+ +   RW EVA +R  MK   + K+
Sbjct: 533 ACRVHSSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQ 592

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SWI +KG  H FL+ DR H  TE+IY KL  L  +   LGY+P     LH+V   + 
Sbjct: 593 PGSSWITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQN 652

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
            E L YHSE+LA+AFGL+S    G T+ I+KNLR+C DCH +   ++++V REIVVRD +
Sbjct: 653 EEMLSYHSERLAIAFGLLSTV-EGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSS 711

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F NG C+CGD W
Sbjct: 712 RFHHFKNGICSCGDYW 727



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 92/435 (21%), Positives = 177/435 (40%), Gaps = 53/435 (12%)

Query: 5   LNQQPQPQNTSTDPR---IVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS 61
           L+  P P   +T  +         +++ ++  +  N    N+ K+  L  +  +FN IPS
Sbjct: 26  LHLPPSPNQITTHLKCRTTPFTTLIQNPKSSSTSLNFTFLNHLKNQKLDSARAVFNKIPS 85

Query: 62  PNIVSWTALISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           P++  +T L+ A++   N   ++N+F  +  +   +   N    AS+      + + F+ 
Sbjct: 86  PHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVIKASI------ICNDFVT 139

Query: 119 GLSL-------HSLSLKLSLHDKPFCG----------------------SALVHFYSRFR 149
            + L       +S+S    +H     G                      +A+V+ Y    
Sbjct: 140 AVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNAMVNGYCNNG 199

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGAL 208
             ++A ++F ++  RDV+ + ++IVG  +N +   +L  F +M   S VG +   +   L
Sbjct: 200 RVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCGL 259

Query: 209 RAAAEL----AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
            AAA++    A ++    +       GLD    V   L+  Y     + DA +VF E + 
Sbjct: 260 SAAAKILDFYAGIQIHCCMFKFGFCCGLDE--FVSASLVTFYASCKRMGDACKVFGETV- 316

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG-ESE 323
             N + W A++ G          LE+F  +      P+E SF + L +    GL   E  
Sbjct: 317 CKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSC--VGLEDLEKG 374

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           + I    ++  LE  +     L+    + G + DA  +   +  E +   W +++   A 
Sbjct: 375 RVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGIC-EKNVVSWNSVIVGCAQ 433

Query: 384 HGKADMASKMGKRLI 398
           HG    A  + K ++
Sbjct: 434 HGCGTWALVLFKEML 448


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 207/582 (35%), Positives = 316/582 (54%), Gaps = 36/582 (6%)

Query: 25  ALKSSQ-ADRSIYNNLITNYSKSN---LLSYSLRLFNHIPSPNIVSWTALISAH---SNS 77
           A  S+Q    + YN L+  Y+K++    L+ + RLF+ IP P+ VS+  L+S H    + 
Sbjct: 34  AFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLSCHFACGDI 93

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF-------GLSLHSLSLKLS 130
             +  +F +M   P          ++ L K  AS   A +F        +S +++   L+
Sbjct: 94  DGARRVFSTM---PVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALA 150

Query: 131 -----------LHDKP-----FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
                        + P        +A+V  Y    +   A + F  +  R++V + A++ 
Sbjct: 151 CSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVA 210

Query: 175 GFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
           G+ +NSR  D+L VF  M   S V      +S  L   + L+A+   R +H   +   L 
Sbjct: 211 GYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLS 270

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           RNV VGT L+  Y K G ++DA +VFDE +S  + +AWNAM++GYAQ G     ++LF  
Sbjct: 271 RNVTVGTSLLSMYCKCGDLNDACKVFDE-MSTKDIVAWNAMISGYAQHGGGMQAIKLFEK 329

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           ++  G  PD  + LAVLTA  + GL     +  E M+  YK+EP ++HY+C++  + RAG
Sbjct: 330 MKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAG 389

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
            LE A  +  +MPFEP  + +  LL+   ++   + A    ++LI+ +P +  AYV +AN
Sbjct: 390 LLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLAN 449

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + +   +W +V+ VR+ MKD  V K  G SW+E+KG  H F + DR+H +   I+ KL  
Sbjct: 450 IYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDR 509

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L    + +GYVP  D  LH+V D  K + L  HSEKLA+AFGL+S +P G TLRI KNLR
Sbjct: 510 LQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSP-GMTLRIFKNLR 568

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IC DCH + K IS++ +REI++RD  R+H F  G C+CGD W
Sbjct: 569 ICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 309/562 (54%), Gaps = 16/562 (2%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS--- 75
           +H   +K+S   R+++  N  +  YSK + ++   +LFN +P  + VS+  +I+A++   
Sbjct: 263 IHGFVVKTSFI-RNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVG 321

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               S+++F  +      +F        ++    AS S     G  LH+  + +S+ D  
Sbjct: 322 KVKESIDLFQEL---QFTTFDRKNFPFPTMLSIAAS-SLDLQMGRQLHA-QVVVSMADPD 376

Query: 136 F-CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
           F   ++LV  Y++    + A ++F  +  R  V + AMI    Q     + L +F +MR 
Sbjct: 377 FRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRR 436

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           ++V +     +  L+A+A LA++   + +H   + SG   NV  G  L+D Y     + D
Sbjct: 437 ANVSADQATFACVLKASANLASILLGKQLHSCVIRSGF-MNVYSGCALLDMYANCASIKD 495

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A + F+E +S  N + WNA+++ YAQ GD    L+ F  + M G+ PD  SFL +LTA  
Sbjct: 496 AIKTFEE-MSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACS 554

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +  L  E  K+   M   Y L P  EHYT ++ A+ R+GR ++AE++   MPFEPD  VW
Sbjct: 555 HCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVW 614

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSA-YVIVANVLSGVGRWDEVAEVRKVMKD 433
            ++L+   IH    +A K   +L ++    D+A YV ++N+ +  G+WD V +V+K M+D
Sbjct: 615 TSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRD 674

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R VRK    SW+E+K KVHVF A D  H +  +I  K+  L E+ E+ GY P       N
Sbjct: 675 RGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLAEQMEKEGYDPDISCAHQN 734

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V    K ++L YHSE+LA+AF L++  P G  + ++KNLR C DCH + K IS++V REI
Sbjct: 735 VDKESKIDSLKYHSERLAIAFALIN-TPEGSPILVMKNLRACTDCHAAIKVISKIVGREI 793

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
            VRD NR+H F +GSC+CGD W
Sbjct: 794 TVRDSNRFHHFRDGSCSCGDYW 815



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 171/382 (44%), Gaps = 14/382 (3%)

Query: 22  HARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           HA+ +K     +  + N L+ +Y K+  L  + RLF  +   + VS+  +I+ ++N+ L+
Sbjct: 163 HAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLN 222

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
                  +    L F P+  T A++      L     FG  +H   +K S     F G+A
Sbjct: 223 EEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDT-AFGQQIHGFVVKTSFIRNVFVGNA 281

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
            + FYS+    +  +K+F+E+ E D V Y  +I  +A   ++ +S+ +F +++ +     
Sbjct: 282 FLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRK 341

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
            +     L  AA    ++  R +H   VVS  D +  V   L+D Y K G   +A R+F 
Sbjct: 342 NFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIF- 400

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG--L 318
             LS  +++ W AM++   Q+G     L+LF+ +     + D+ +F  VL A  N    L
Sbjct: 401 LRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASIL 460

Query: 319 AGESEKWIERMKVRYKLEPGLEHYT--CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            G   K +    +R      +  Y+   L+        ++DA +    M  E +   W A
Sbjct: 461 LG---KQLHSCVIRSGF---MNVYSGCALLDMYANCASIKDAIKTFEEMS-ERNVVTWNA 513

Query: 377 LLSFSAIHGKADMASKMGKRLI 398
           LLS  A +G      K  + +I
Sbjct: 514 LLSAYAQNGDGKGTLKSFEEMI 535



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 173/379 (45%), Gaps = 12/379 (3%)

Query: 12  QNTSTDPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
           ++ S   ++  AR L     +R+ +  + +I+ Y KS  L+ + R+F+      +V+WT 
Sbjct: 51  KDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTT 110

Query: 70  LISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLS 126
           +I A+S S     +  +F  M R  +    P+  T  +L   C  L  A       H+  
Sbjct: 111 MIGAYSKSNRFGDAFKLFAEMHRSGS---QPDYVTYITLLTGCNDLEVAKEL-YQAHAQI 166

Query: 127 LKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186
           +KL  H      + L+  Y +    D+A+++F E+   D V +  MI G+A N    +++
Sbjct: 167 VKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAI 226

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
            +F +M++     + +  +  + A+  L      + IHG  V +   RNV VG   +D Y
Sbjct: 227 ELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFY 286

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            K   V++ R++F+E +  L+ +++N ++  YA  G     ++LF  L+   F    + F
Sbjct: 287 SKHDCVNEVRKLFNE-MPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPF 345

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
             +L+ +  + L  +  + +    V    +P       L+    + G+ E+A+RI + + 
Sbjct: 346 PTMLS-IAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLS 404

Query: 367 FEPDAAVWRALLSFSAIHG 385
                  W A++S +   G
Sbjct: 405 -SRSTVPWTAMISANVQRG 422


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 179/558 (32%), Positives = 309/558 (55%), Gaps = 5/558 (0%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + VH   + S  + D +  N LI  Y+K   L  S  +F+ +   + VSW ++I+ +  +
Sbjct: 336 KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQN 395

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S +  + + +       P+  T   L      L    L G  LH    K+  +     
Sbjct: 396 G-SFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHL-GKELHCDLAKMGFNSNIVV 453

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + LV  Y++     ++ KVF+ ++ RD++ +  +I     +      L + + MR+  V
Sbjct: 454 SNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV 513

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
              M  +   L   + LAA  Q + IHG     GL+ +V VG  LI+ Y K G + ++ +
Sbjct: 514 TPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQ 573

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF + +   + + W A+++     G+    +  F  +E  G  PD  +F+A++ A  ++G
Sbjct: 574 VF-KLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSG 632

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E   +  RMK  YK+EP +EHY C++  + R+  L+ AE   ++MP +PD+++W AL
Sbjct: 633 LVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGAL 692

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           LS   + G  ++A ++ +R+I++NP D   YV+V+N+ + +G+WD+V  +RK +K R ++
Sbjct: 693 LSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLK 752

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K+ G SW+E++ KV+VF  G +  E+ E++   L  L     + GY+     +LH++ + 
Sbjct: 753 KDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDED 812

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           EKR+ L  HSE+LA+AFGL++  P G  L+++KNLR+C DCH   KYIS++V+RE++VRD
Sbjct: 813 EKRDILCGHSERLAIAFGLLNTKP-GTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRD 871

Query: 558 VNRYHRFLNGSCTCGDLW 575
            NR+H F +G+C+CGD W
Sbjct: 872 ANRFHVFKDGACSCGDYW 889



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 184/367 (50%), Gaps = 19/367 (5%)

Query: 60  PSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
           PS N+  W ++I A +++ L   +L+++    R   +   P+  T  S+   CA L   F
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQR---IRLQPDTYTFPSVINACAGLLD-F 131

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
               S+H   L +      + G+AL+  Y RF   D A+KVF+E+  RDVV + ++I G+
Sbjct: 132 EMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 191

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
             N    ++L ++   R+  V    Y +S  LRA   L ++E+  +IHG     G+ ++V
Sbjct: 192 NANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDV 251

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
           IV  GL+  Y K   + D RR+FD+ + + ++++WN M+ GY+Q G     ++LF  +EM
Sbjct: 252 IVNNGLLSMYCKFNGLIDGRRIFDK-MVLRDAVSWNTMICGYSQVGLYEESIKLF--MEM 308

Query: 297 -RGFAPDEYSFLAVLTALCNAGLAGESE--KWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
              F PD  +  ++L A    G  G+ E  K++    +    E        LI+   + G
Sbjct: 309 VNQFKPDLLTITSILQA---CGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCG 365

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIVA 412
            L  ++ +   M  + D+  W ++++    +G  D A K+ K +  D+ P D   YV++ 
Sbjct: 366 NLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKP-DSVTYVMLL 423

Query: 413 NVLSGVG 419
           ++ + +G
Sbjct: 424 SMSTQLG 430



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 174/382 (45%), Gaps = 17/382 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H R L     +D  I N LI  Y + N L  + ++F  +P  ++VSW +LIS ++ +  
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                    R   L  +P+  T++S+ + C  L  +   G  +H L  K+ +       +
Sbjct: 197 WNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLG-SVEEGDIIHGLIEKIGIKKDVIVNN 255

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            L+  Y +F    + +++FD++  RD V +  MI G++Q     +S+ +F +M  +    
Sbjct: 256 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKP 314

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            +  ++  L+A   L  +E  + +H + + SG + +      LI+ Y K G +  ++ VF
Sbjct: 315 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 374

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL---TALCNA 316
              +   +S++WN+M+  Y Q G     ++LF +++     PD  +++ +L   T L + 
Sbjct: 375 -SGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGDL 432

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            L  E    + +M     +         L+    + G + D+ ++   M    D   W  
Sbjct: 433 HLGKELHCDLAKMGFNSNIVVS----NTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNT 487

Query: 377 LLSFSAIHGKADMASKMGKRLI 398
           +++ S +H +      +G R+I
Sbjct: 488 IIA-SCVHSE---DCNLGLRMI 505



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 10/261 (3%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNS 180
           LHSL + L LH      + L+  Y+ FR P ++  VF       +V  + ++I     N 
Sbjct: 35  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNG 94

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              ++LS++++ +   +    Y     + A A L   E  + IH   +  G   ++ +G 
Sbjct: 95  LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGN 154

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            LID Y +   +  AR+VF+E + + + ++WN++++GY   G  +  LE+++     G  
Sbjct: 155 ALIDMYCRFNDLDKARKVFEE-MPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 213

Query: 301 PDEYSFLAVLTALCNAGLAGESE---KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           PD Y+  +VL A    G   E +     IE++ ++  +         L+S   +   L D
Sbjct: 214 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVN----NGLLSMYCKFNGLID 269

Query: 358 AERIAMAMPFEPDAAVWRALL 378
             RI   M    DA  W  ++
Sbjct: 270 GRRIFDKMVLR-DAVSWNTMI 289


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 175/555 (31%), Positives = 306/555 (55%), Gaps = 4/555 (0%)

Query: 22  HARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           H  ALKS     + + N LI  YS+ + +  ++ ++  +P  ++ S+  +I+    +   
Sbjct: 152 HGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYP 211

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
                 + R      + +  T  + F  C+ L    L GL +H    +       F  SA
Sbjct: 212 SEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRL-GLQVHCRMFRTGAEYDSFVSSA 270

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           ++  Y +  +  NA+KVF+ ++ ++VV + A++  ++QN    ++L+ F +M    +   
Sbjct: 271 IIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPN 330

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
            Y  +  L + A ++A+   +++H     SG + ++IVG  LI+ Y K+G +  A +VF 
Sbjct: 331 EYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFL 390

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
           E +   +SI W+AM+ G +  G     L +F  +      P   +F+ VL+A  + G   
Sbjct: 391 E-MICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQ 449

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           E   ++ ++  +  +EPG+EHYTC++  + +AGRL++AE    + P + D   WR LLS 
Sbjct: 450 EGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSA 509

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
             +H    +  K+ + ++ ++P D   Y++++N+ +   RWD V ++RK+M++R V+KE 
Sbjct: 510 CHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEP 569

Query: 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKR 500
           G SWIE++  +HVF++  + H  +  IY K+ EL+     +GYVP    + H+V D +KR
Sbjct: 570 GASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKR 629

Query: 501 EALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNR 560
           E + YHSEKLA+A+GL+   P G  +R++KNLR+C DCH + K IS+V  R I+VRD NR
Sbjct: 630 EYVSYHSEKLAIAYGLMK-TPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANR 688

Query: 561 YHRFLNGSCTCGDLW 575
           +H F +G C+C D W
Sbjct: 689 FHCFGDGGCSCADYW 703



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 186/412 (45%), Gaps = 10/412 (2%)

Query: 19  RIVHARALKSSQADRS---IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           +++HA  + ++QA +      N+LI  Y+K + +  +  LF+ +   N+VSW AL++ + 
Sbjct: 45  KMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYF 104

Query: 76  NSPLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           ++ L L +        ++ ++ PN+   A++  +C+  S   + G   H  +LK  L   
Sbjct: 105 HNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSD-SGQVVEGWQCHGYALKSGLVFH 163

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +  +AL+  YSR      A  V+ E+   DV  Y  +I G  +N    ++L V   M  
Sbjct: 164 QYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVD 223

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +         A    + L  +     +H     +G + +  V + +ID YGK G + +
Sbjct: 224 ECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILN 283

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR+VF+  L   N ++W A++A Y+Q G     L  F  +E+ G  P+EY+F  +L +  
Sbjct: 284 ARKVFNR-LQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCA 342

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
                G  +    R+K +   E  +     LI+   ++G +E A ++ + M    D+  W
Sbjct: 343 GISALGHGKLLHTRIK-KSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICR-DSITW 400

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
            A++   + HG    A  + + ++     +   YV    VLS       V E
Sbjct: 401 SAMICGLSHHGLGREALVVFQEMLAAK--ECPHYVTFVGVLSACAHLGSVQE 450


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 177/516 (34%), Positives = 288/516 (55%), Gaps = 7/516 (1%)

Query: 43  YSKSNLLSYSL----RLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           YSK    SY L    ++F  +P  +IVSW  +IS ++ + +  +  + +         P+
Sbjct: 136 YSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPD 195

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
             TL+S+    A   +  L G  +H  +++       F GS+L+  Y++    D++ +VF
Sbjct: 196 SFTLSSVLPIFAEYVN-LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVF 254

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
             + + D + + ++I G  QN    + L  F  M  + +       S  + A A L  + 
Sbjct: 255 YMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLH 314

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
             + +HG+ + S  D NV + + L+D Y K G +  AR +FD+ + + + ++W AM+ GY
Sbjct: 315 LGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDK-MELYDMVSWTAMIMGY 373

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A  G     + LF  +E+ G  P+  +F+AVLTA  +AGL  E+ K+   M   Y++ PG
Sbjct: 374 ALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPG 433

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           LEHY  +   +GR GRLE+A      M  EP  +VW  LL+   +H   ++A K+ K+L 
Sbjct: 434 LEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLF 493

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
            ++P +  AYV+++N+ S  GRW +  ++R  M+D+ ++K+   SWIE+K KVH F+AGD
Sbjct: 494 TVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGD 553

Query: 459 RMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVS 518
           + H   + I   L  L+E+ ER GYV    E+LH+V + +KR  L  HSE+LA+ FG++S
Sbjct: 554 KSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIIS 613

Query: 519 GAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
             P G T+R+ KNLR+C DCH + K+IS++V REIV
Sbjct: 614 -TPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIV 648


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 308/566 (54%), Gaps = 40/566 (7%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
           Y+    + +SL LF+    P++  +TA I+  S + L    FL  ++  +    PN+ T 
Sbjct: 72  YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTF 131

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           +S+ K+C++ S     G  +H+  LK  L   P+  + LV  Y++     +A+KVFD + 
Sbjct: 132 SSILKSCSTKS-----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMP 186

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG---------------- 206
           ER +V   AMI  +A+   +  + ++F  M   D+ S    + G                
Sbjct: 187 ERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQK 246

Query: 207 ----------------ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
                           AL A +++ A+E  R IH     S +  NV V T LID Y K G
Sbjct: 247 LLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCG 306

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE-MRGFAPDEYSFLAV 309
            + +A  VF++     + +AWNAM+ GYA  G     L LF  ++ + G  P + +F+  
Sbjct: 307 SLEEAVLVFNDT-PRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGT 365

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  +AGL  E  +  E M   Y ++P +EHY CL+S +GRAG+L+ A  I   M  E 
Sbjct: 366 LQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEA 425

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           D+ +W ++L    +HG+  +  ++ + LI  N  +   YV+++N+ + VG ++ VA+VR 
Sbjct: 426 DSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRN 485

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
           +MK++ + KE G S IE+  KVH F AGDR H ++++IYT L ++ E  +  GYVP  + 
Sbjct: 486 LMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNT 545

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +LH++ + EK  +L  HSE+LA+A+GL+S  P G  L+I KNLR+C DCH   K IS++ 
Sbjct: 546 VLHDLEETEKERSLQVHSERLAIAYGLISTKP-GSPLKIFKNLRVCSDCHTVTKLISKIT 604

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
            R+IV+RD NR+H F +GSC+C D W
Sbjct: 605 GRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 126/273 (46%), Gaps = 14/273 (5%)

Query: 20  IVHARALKSSQADRSIYNN--LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +V A+ +     +RS+ ++  +IT Y+K   +  +  LF+ +   +IVSW  +I  +S  
Sbjct: 175 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQH 234

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL--SLKLSLH 132
                +L +F  +L        P++ T+ +    C+ +  A   G  +H    S ++ L+
Sbjct: 235 GFPSDALMLFQKLLADGKPK--PDEITVVAALSACSQIG-ALETGRWIHVFVNSSRIRLN 291

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            K  C +AL+  YS+  S + A  VF++   +D+V + AMI G+A +    D+L +F +M
Sbjct: 292 VK-VC-TALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEM 349

Query: 193 RS-SDVGSTMYCVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           +  + +  T     G L+A A    + E  ++        G+   +     L+   G+AG
Sbjct: 350 QGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAG 409

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
            +  A  +        +S+ W++++      G+
Sbjct: 410 QLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGE 442


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 189/558 (33%), Positives = 304/558 (54%), Gaps = 8/558 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+K+   ++  + N LI  Y+K   +SY  R F+ +   +++SWT   + ++ +  
Sbjct: 283 IHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKC 342

Query: 80  SLNIFLSMLRHPTLSFLPNQRTL-ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
            L   L +LR   +  +    T+  S+   C  L+        +H  +++  L D P   
Sbjct: 343 YLQA-LELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIK-EIHGYTIRGGLSD-PVLQ 399

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           + ++  Y      D A ++F+ I  +DVV + +MI  +  N     +L VF+ M+ + + 
Sbjct: 400 NTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLE 459

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                +   L A   L+ +++ + IHG  +  G      +   L+D Y + G V DA ++
Sbjct: 460 PDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKI 519

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F    +  N I W AM++ Y   G     +ELF  ++     PD  +FLA+L A  ++GL
Sbjct: 520 FTCTKN-RNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGL 578

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E + ++E MK  Y+LEP  EHYTCL+  +GR   LE+A +I  +M  EP   VW ALL
Sbjct: 579 VNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALL 638

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               IH   ++     ++L++++  +   YV+V+NV +  GRW +V EVR  MK   + K
Sbjct: 639 GACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTK 698

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL-GYVPVWDEMLHNVGDR 497
             G SWIEV  K+H FL+ D++H   + IY KLA++ E+ +R  GYV     +LHNVG+ 
Sbjct: 699 NPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEE 758

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           EK + L+ HSE+LA+A+GL++ A  G  +R+ KNLR+C DCH     +SR  ERE++VRD
Sbjct: 759 EKVQMLYGHSERLAIAYGLLATA-EGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRD 817

Query: 558 VNRYHRFLNGSCTCGDLW 575
            +R+H F +G C+CGD W
Sbjct: 818 ASRFHHFKDGMCSCGDFW 835



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 198/405 (48%), Gaps = 19/405 (4%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPN-IVSWTALISAHSNS 77
           +H  A+K    D  ++  N+L+  Y+K N ++ + +LF+ +   N +VSW ++ISA+S +
Sbjct: 80  IHGLAIKYG-CDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGN 138

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +   +L +F  ML+   ++   N  T A+  + C   S   L G+ +H+  LK      
Sbjct: 139 GMCTEALCLFSEMLKAGVVT---NTYTFAAALQACEDSSFIKL-GMQIHAAILKSGRVLD 194

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +  +ALV  Y RF     A  +F  +  +D+V + +M+ GF QN    ++L  F D+++
Sbjct: 195 VYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQN 254

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           +D+      +   + A+  L  +   + IH +A+ +G D N++VG  LID Y K   +S 
Sbjct: 255 ADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSY 314

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
             R FD  ++  + I+W    AGYAQ       LEL   L+M G   D     ++L A  
Sbjct: 315 GGRAFDL-MAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACR 373

Query: 315 NAGLAGESEKWIERMKVRYKL-EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
                G+  K I    +R  L +P L++   +I   G  G ++ A RI  ++  + D   
Sbjct: 374 GLNCLGKI-KEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIECK-DVVS 429

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
           W +++S    +G A+ A ++   + +     D  YV + ++LS V
Sbjct: 430 WTSMISCYVHNGLANKALEVFSSMKETGLEPD--YVTLVSILSAV 472



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 133/262 (50%), Gaps = 9/262 (3%)

Query: 55  LFNHIPSPNIVSWTALISAHSNSPLSLNIFLSM---LRHPTLSFLPNQRTLASLFKTCAS 111
           +F+ +   +I +W A++  + ++  +L   L M   +RH  +SF  +  T   L K C  
Sbjct: 14  IFDKMSERSIFTWNAMMGGYVSNGEALGA-LEMYREMRHLGVSF--DSYTFPVLLKACGI 70

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYG 170
           +   F  G  +H L++K       F  ++LV  Y++    + A+K+FD +  R DVV + 
Sbjct: 71  VEDLFC-GAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWN 129

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           ++I  ++ N    ++L +F++M  + V +  Y  + AL+A  + + ++    IH   + S
Sbjct: 130 SIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKS 189

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           G   +V V   L+  Y + G + +A  +F  NL   + + WN+M+ G+ Q G  S  LE 
Sbjct: 190 GRVLDVYVANALVAMYVRFGKMPEAAVIFG-NLEGKDIVTWNSMLTGFIQNGLYSEALEF 248

Query: 291 FHLLEMRGFAPDEYSFLAVLTA 312
           F+ L+     PD+ S ++++ A
Sbjct: 249 FYDLQNADLKPDQVSIISIIVA 270



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 82/168 (48%)

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           Y +  S  +A+ +FD++ ER +  + AM+ G+  N   + +L ++ +MR   V    Y  
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
              L+A   +  +     IHG A+  G D  V V   L+  Y K   ++ AR++FD    
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             + ++WN++++ Y+  G  +  L LF  +   G   + Y+F A L A
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQA 169


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 179/550 (32%), Positives = 292/550 (53%), Gaps = 8/550 (1%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIVSWTALISAHSNSPL---SLNIFLS 86
            D  +   ++  Y K   + Y+ R+F+ +    N V+W+A++ A+        +L +F  
Sbjct: 253 GDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQ 312

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           +L       + +  TLA++ + CA+L+     G  LH  ++K         G+ L+  Y+
Sbjct: 313 LLMLKDDVIVLSAVTLATVIRVCANLTD-LSTGTCLHCYAIKSGFVLDLMVGNTLLSMYA 371

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +    + A + F+E+  RD V + A+I G+ QN    + L +F +M+ S +      ++ 
Sbjct: 372 KCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLAS 431

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A A LA +      H +A++ G   + ++   LID Y K G +  AR+VFD  +   
Sbjct: 432 VLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDR-MHKR 490

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
             ++WN M+  Y   G     L LF  ++  G  PD+ +F+ +++A  ++GL  E + W 
Sbjct: 491 GIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWF 550

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             M   + + P +EHY C++  + RAG  ++       MP EPD  VW ALLS   ++  
Sbjct: 551 NAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKN 610

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++   + K++  + P     +V+++N+ S VGRWD+ A+VR   K++   K  G SWIE
Sbjct: 611 VELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIE 670

Query: 447 VKGKVHVFLAGD-RMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWY 505
           + G VH FL G  R H +   I  KL EL+ E +RLGY      +  +V + EK   L Y
Sbjct: 671 ISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLY 730

Query: 506 HSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFL 565
           HSEKLA+AFG++S +P  K + + KNLR+C DCH + K+IS V +R+I VRD +R+H F 
Sbjct: 731 HSEKLAIAFGILSLSP-DKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFK 789

Query: 566 NGSCTCGDLW 575
           +G C CGD W
Sbjct: 790 DGICNCGDFW 799



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 9/266 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS-NSPL--SLNIFLSMLRH 90
           +  L+  Y   + L  +  +F+ +P    N+V W  LI A++ N P   +++++  ML +
Sbjct: 54  FEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGY 113

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
                 PN+ T   + K C++L  A   G  +H    +L L    +  +ALV FY++   
Sbjct: 114 ---GITPNRFTFPFVLKACSALKEASE-GREIHCDIKRLRLESNVYVSTALVDFYAKCGC 169

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            D+AK+VFD++ +RDVV + +MI GF+ +    D ++       +DV      + G L A
Sbjct: 170 LDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPA 229

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A++ ++   + IHG  V  G   +V+VGTG++D YGK   +  ARR+FD    V N + 
Sbjct: 230 VAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVT 289

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEM 296
           W+AM+  Y         LELF  L M
Sbjct: 290 WSAMVGAYVVCDFMREALELFCQLLM 315



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 242 LIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
           L+D Y     +  AR VFD+      N + WN ++  YA  G     ++L++ +   G  
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
           P+ ++F  VL A C+A       + I     R +LE  +   T L+    + G L+DA+ 
Sbjct: 117 PNRFTFPFVLKA-CSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKE 175

Query: 361 IAMAMPFEPDAAVWRALLS-FSAIHGKADMASKMGKRLI-DINP 402
           +   M  + D   W +++S FS   G  D  +++  ++  D++P
Sbjct: 176 VFDKM-HKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSP 218


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 306/583 (52%), Gaps = 43/583 (7%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNI 83
           K  Q D  +   +I  Y+K   +  +  +F+ +   N++SW+A+I+A   H     +L++
Sbjct: 288 KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 347

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH---DKPFCGSA 140
           F  ML   +   LP++ TLASL   C +  +       +  +  + S+H         + 
Sbjct: 348 FRMML---SSGMLPDKITLASLLYACINCRNL----TQVRQVHAQASVHGMLQNLIVANK 400

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV----------------- 183
           LVHFYS +R+ D+A  +FD +  RD V +  M+ GFA+    +                 
Sbjct: 401 LVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPD 460

Query: 184 -----------DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
                      +SL +F  MR   V      +   + A A+L AM + R I  +      
Sbjct: 461 NYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKF 520

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
             +VI+GT +ID + K G V  AR +FD  +   N I+W+AM+A Y   G     L+LF 
Sbjct: 521 QLDVILGTAMIDMHAKCGCVESAREIFDR-MEEKNVISWSAMIAAYGYHGQGRKALDLFP 579

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
           ++   G  P++ + +++L A  +AGL  E  ++   M   Y +   ++HYTC++  +GRA
Sbjct: 580 MMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRA 639

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412
           GRL++A ++  +M  E D  +W A L     H    +A K    L+++ P +   Y++++
Sbjct: 640 GRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLS 699

Query: 413 NVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLA 472
           N+ +  GRW++VA+ R +M  RR++K  G +WIEV  K H F  GD  H R+++IY  L 
Sbjct: 700 NIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLK 759

Query: 473 ELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNL 532
            L  + E +GYVP  + +LH+V +  K   L+ HSEKLA+AFGL++  P    +RI+KNL
Sbjct: 760 SLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIA-TPEHTPIRIIKNL 818

Query: 533 RICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           R+C DCH   K +S +  R I+VRD NR+H F  G+C+CGD W
Sbjct: 819 RVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 139/302 (46%), Gaps = 24/302 (7%)

Query: 16  TDPRIVHARA-LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T  R VHA+A +     +  + N LI  YS    L  +  LF+ +   + VSW+ ++   
Sbjct: 95  TQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGF 154

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           +     +N F +          P+  TL  + + C  L +  +                 
Sbjct: 155 AKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM----------------- 197

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
                ALV  Y + R  ++A+ +FD+++ERD+V +  MI G+A+  +  +SL +F  MR 
Sbjct: 198 -----ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 252

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V      +   + A A+L AM + R+I  +        +VI+GT +ID Y K G V  
Sbjct: 253 EGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVES 312

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR +FD  +   N I+W+AM+A Y   G     L+LF ++   G  PD+ +  ++L A  
Sbjct: 313 AREIFDR-MEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACI 371

Query: 315 NA 316
           N 
Sbjct: 372 NC 373



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 160/373 (42%), Gaps = 44/373 (11%)

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL---- 127
           +AHS  P+  +I  +  R  +L+ L N+   +S F     L+  F     ++  +L    
Sbjct: 40  TAHSVIPIVESIIETQFRQTSLN-LHNREEESSKFHFLQRLNPKFYISALVNCRNLTQVR 98

Query: 128 ----KLSLH---DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
               + S+H   +     + L++FYS +R+ D+A  +FD +  RD V +  M+ GFA+  
Sbjct: 99  QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 158

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
             ++    F ++         Y +   +RA  +L  ++                      
Sbjct: 159 DYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM--------------------- 197

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            L+D Y K   + DAR +FD+ +   + + W  M+ GYA+ G  +  L LF  +   G  
Sbjct: 198 ALVDMYVKCREIEDARFLFDK-MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 256

Query: 301 PDEYSFLAVLTALCNAGLAGES---EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           PD+ + + V+ A    G   ++   + +I+R K +  +  G    T +I    + G +E 
Sbjct: 257 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMYAKCGCVES 312

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           A  I   M  E +   W A+++    HG+   A  + + ++      D   + +A++L  
Sbjct: 313 AREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDK--ITLASLLYA 369

Query: 418 VGRWDEVAEVRKV 430
                 + +VR+V
Sbjct: 370 CINCRNLTQVRQV 382


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 311/564 (55%), Gaps = 17/564 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHS 75
           R VH +  +   ++D  + N L+  Y+K   +  +  +F  +    IVSWT++IS  A +
Sbjct: 193 RRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQN 252

Query: 76  NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKT---CASLSHAFLFGLSLHSLSLKLSL 131
             P+ +L IF  M +    +  P+   L S+ +       L H    G S+H   +K+ L
Sbjct: 253 GQPIEALRIFSEMRK---TNVRPDWIALVSVLRAYTDVEDLEH----GKSIHGCVIKMGL 305

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
             +     +L   Y++      A+  F+++    ++ + AMI G+ +N    +++ +F  
Sbjct: 306 ECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRL 365

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+S ++      V+ ++ A A++ ++E  R +  +  +S    +VIV T LID Y K G 
Sbjct: 366 MKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGS 425

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           V  AR VFD  +   + + W+AMM GY   G     + LFH +   G +P++ +F+ +LT
Sbjct: 426 VDMARFVFDR-IPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLT 484

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  N+GL  E      RM+  Y +EP  +HY C++  +GRAG L+ A    M MP EP  
Sbjct: 485 ACKNSGLVEEGWDLFHRMR-DYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGV 543

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           +VW ALLS   IH    +     +RL  ++PY+   YV ++N+ +    WD VA+VR +M
Sbjct: 544 SVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLM 603

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           +++ + K  G S IE+ GK+  F AGD+ H R+++I+ ++ +L    +  G+VP  + +L
Sbjct: 604 REKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVL 663

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H++   E  E L  HSE+LA+A+GL+S  P G TLRI KNLR C +CH + K IS++V R
Sbjct: 664 HDLNYEETEETLCNHSERLAIAYGLIS-TPPGTTLRITKNLRACDNCHAAIKLISKLVSR 722

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EIVVRD  R+H F +G+C+CGD W
Sbjct: 723 EIVVRDACRFHHFKDGACSCGDYW 746



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 160/351 (45%), Gaps = 8/351 (2%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           L+   S    +S + +LF+  P P++  W A++  +S      +      R       P+
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
             +   + K C++L  A   G  +H    +       F  + LV  Y++      A  VF
Sbjct: 173 GFSFPCVLKACSALP-ALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVF 231

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
             + +R +V + ++I G+AQN + +++L +F++MR ++V      +   LRA  ++  +E
Sbjct: 232 GRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLE 291

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD--ENLSVLNSIAWNAMMA 276
             + IHG  +  GL+    +   L   Y K G V  AR  F+  EN S+   I WNAM++
Sbjct: 292 HGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSL---IFWNAMIS 348

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GY + G     +ELF L++ +   PD  +  + + A    G + E  +W++      +  
Sbjct: 349 GYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIG-SLELARWMDEYISMSEFR 407

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
             +   T LI    + G ++ A  +   +P + D  VW A++    +HG+ 
Sbjct: 408 NDVIVNTSLIDTYAKCGSVDMARFVFDRIP-DKDVVVWSAMMVGYGLHGQG 457



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 3/256 (1%)

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+K+FD+  + DV  + A++  ++++     ++ ++A M+ + V    +     L+A + 
Sbjct: 126 ARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSA 185

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           L A+E  R +HG     G + +V V  GL+  Y K G +  A  VF   L     ++W +
Sbjct: 186 LPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGR-LVDRTIVSWTS 244

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           +++GYAQ G     L +F  +      PD  + ++VL A  +     E  K I    ++ 
Sbjct: 245 IISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDL-EHGKSIHGCVIKM 303

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            LE   +    L S   + G +  A R+       P    W A++S    +G A+ A ++
Sbjct: 304 GLECEFDLLISLTSLYAKCGHVMVA-RLFFNQVENPSLIFWNAMISGYVKNGYAEEAIEL 362

Query: 394 GKRLIDINPYDDSAYV 409
            + +   N   DS  V
Sbjct: 363 FRLMKSKNIRPDSITV 378



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 3/164 (1%)

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           I+   +V+GL     +   L++     G VS AR++FD+     +   WNA++  Y++ G
Sbjct: 94  IYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDK-FPDPDVFLWNAIVRCYSRHG 152

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                +E++  +++   +PD +SF  VL A C+A  A E  + +     R+  E  +   
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKA-CSALPALEMGRRVHGQIFRHGFESDVFVQ 211

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             L++   + G +  A  +      +     W +++S  A +G+
Sbjct: 212 NGLVALYAKCGEIVRANAV-FGRLVDRTIVSWTSIISGYAQNGQ 254


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 190/530 (35%), Positives = 291/530 (54%), Gaps = 7/530 (1%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALI--SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLF 106
           LSY+L +F +IP P+   W A+I  +A S+ P +   +   +         +  T +   
Sbjct: 51  LSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFAL 110

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166
           K CA  + A    + LHS  L+   +      + L+  Y++    D A+K+FDE+ + D+
Sbjct: 111 KACAR-ALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDI 169

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADMR-SSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
             + A+I GFAQ SR  D++  F  M+   ++      V GAL A ++L A+++   +H 
Sbjct: 170 ASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHK 229

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           + V   L+ NV V   +ID Y K G +  A  VF+      + I WN M+  +A  GD  
Sbjct: 230 YIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGH 289

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             L+LF  L   G +PD  S+LAVL A  +AGL  +  K    M  R  LEP ++HY  +
Sbjct: 290 KALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSM 348

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +  +GRAGRL++A  I  ++PF P+  +W+ LL     +G  +MA    ++L+++     
Sbjct: 349 VDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISC 407

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             +V+++NV +   RWD+V  VR  M+ R V+K  G S+IE+KGK++ F+ GD+ H    
Sbjct: 408 GDFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCR 467

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT 525
           +IY KL E+    +  GY      +LH++GD +K  AL YHSEKLA+AFGL      G  
Sbjct: 468 EIYAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTC-TEEGTP 526

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++++KNLRIC DCH   K IS++  REI+VRD  R+HRF  G C+C D W
Sbjct: 527 IQVIKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 115/266 (43%), Gaps = 5/266 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H++ L+    AD  +   L+  Y+K   L  + +LF+ +P P+I SW ALI+  +    
Sbjct: 125 LHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSR 184

Query: 80  SLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
             +  ++  R      L PN  T+      C+ L  A   G S+H   ++  L+      
Sbjct: 185 PADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLG-ALKEGESVHKYIVEEKLNSNVQVC 243

Query: 139 SALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           + ++  Y++  S D A  VF+ +R ++ ++ +  MI+ FA +     +L +F  +  S +
Sbjct: 244 NVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGM 303

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                     L A      +E    +       GL+ N+     ++D  G+AG + +A  
Sbjct: 304 SPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYD 363

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGD 283
           +   +L   N + W  ++      GD
Sbjct: 364 IV-SSLPFPNMVLWQTLLGACRTYGD 388


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 202/560 (36%), Positives = 311/560 (55%), Gaps = 30/560 (5%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSP---NIVSWTALISA---HSNSPLSLNIFLSM 87
           S+ N ++  YS+   LS + R+F  +      + VSW A+I A   H     ++ +F  M
Sbjct: 175 SVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREM 234

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           +R        +  T+AS+  T  +     + G   H + +K   H     GS L+  YS+
Sbjct: 235 VRR---GLKVDMFTMASVL-TAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSK 290

Query: 148 FR-SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV-DSLSVFADMRSSDV---GSTMY 202
              S    +KVF+EI   D+V +  MI GF+    L  D L  F +M+ +       +  
Sbjct: 291 CAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFV 350

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN-VIVGTGLIDGYGKAGIVSDARRVFDE 261
           CV+ A    + L++    + +H  A+ S +  N V V   L+  Y K G V DARRVFD 
Sbjct: 351 CVTSA---CSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFD- 406

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            +   N+++ N+M+AGYAQ G +   L LF L+  +  AP+  +F+AVL+A  + G   E
Sbjct: 407 TMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEE 466

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
            +K+   MK R+ +EP  EHY+C+I  +GRAG+L++AERI   MPF P +  W  LL   
Sbjct: 467 GQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGAC 526

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
             HG  ++A K     + + PY+ + YV+++N+ +   RW+E A V+++M++R V+K+ G
Sbjct: 527 RKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPG 586

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP------VWDEMLHNVG 495
            SWIE+  KVHVF+A D  H   ++I+  + +++++ ++ GYVP      V DE +    
Sbjct: 587 CSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEP-D 645

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           +RE+R  L YHSEKLA+AFGL+S    G  + +VKNLRIC DCH + K IS +  REI V
Sbjct: 646 ERERR--LLYHSEKLAVAFGLIS-TEEGVPILVVKNLRICGDCHNAVKLISALTGREITV 702

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD +R+H F  G C+C D W
Sbjct: 703 RDTHRFHCFKEGHCSCRDYW 722



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 195/427 (45%), Gaps = 55/427 (12%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           YN LI  Y+K +L+  + R+F+ IP P+IVS+  LI+A+++              PTL  
Sbjct: 78  YNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGEC---------GPTLRL 128

Query: 96  LPNQR---------TLASLFKTCASLSHAFLFGL--SLHSLSLKLSLHDKPFCGSALVHF 144
               R         TL+ +   C         GL   LH   +           +A++  
Sbjct: 129 FEEVRELRLGLDGFTLSGVITACGD-----DVGLVRQLHCFVVVCGHDCYASVNNAVLAC 183

Query: 145 YSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201
           YSR      A++VF E+ E   RD V + AMIV   Q+   ++++ +F +M    +   M
Sbjct: 184 YSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDM 243

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-AGIVSDARRVFD 260
           + ++  L A   +  +   R  HG  + SG   N  VG+GLID Y K AG + + R+VF+
Sbjct: 244 FTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFE 303

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQST-VLELFHLLEMRGFAPDEYSFLAVLTALCNA--- 316
           E ++  + + WN M++G++   D S   L  F  ++  GF PD+ SF+ V +A  N    
Sbjct: 304 E-ITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSP 362

Query: 317 -------GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
                   LA +S+    R+ V             L++   + G + DA R+   MP E 
Sbjct: 363 SLGKQVHALAIKSDVPYNRVSVN----------NALVAMYSKCGNVHDARRVFDTMP-EH 411

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           +     ++++  A HG    + ++ + ++  DI P +   ++ V +     G+ +E  + 
Sbjct: 412 NTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAP-NSITFIAVLSACVHTGKVEEGQKY 470

Query: 428 RKVMKDR 434
             +MK+R
Sbjct: 471 FNMMKER 477



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 147/334 (44%), Gaps = 21/334 (6%)

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           P  ++L N  TL  L+  C SL +A          S  L+ +   F  + L++ Y++   
Sbjct: 41  PPSTYLSNHFTL--LYSKCGSLHNA--------QTSFHLTQYPNVFSYNTLINAYAKHSL 90

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
              A++VFDEI + D+V Y  +I  +A       +L +F ++R   +G   + +SG + A
Sbjct: 91  IHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITA 150

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE--NLSVLNS 268
             +   +   R +H   VV G D    V   ++  Y + G +S+ARRVF E       + 
Sbjct: 151 CGDDVGL--VRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDE 208

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL-CNAGLAGESEKWIE 327
           ++WNAM+    Q  +    + LF  +  RG   D ++  +VLTA  C   L G  +    
Sbjct: 209 VSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQ--FH 266

Query: 328 RMKVRYKLEPGLEHYTCLISAMGR-AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
            M ++          + LI    + AG + +  ++   +   PD  +W  ++S  +++  
Sbjct: 267 GMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEIT-APDLVLWNTMISGFSLYED 325

Query: 387 ADMASKMGKRLIDINPY--DDSAYVIVANVLSGV 418
                    R +  N +  DD ++V V +  S +
Sbjct: 326 LSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNL 359


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 306/563 (54%), Gaps = 14/563 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R V A A K     D+ + N+LI  Y+    +  +  LF+ +    +++W A+I+ +  +
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250

Query: 78  ---PLSLNIFLSML--RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
                 + +F  ML  R P      ++ TL S+   C  L  A L          K  L 
Sbjct: 251 GDWKEVVEMFKGMLEVRAPF-----DEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLR 305

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            +    +ALV  Y++    D A+++FD +  RDVV + AMI G+ Q+ R  ++L++F +M
Sbjct: 306 SRNL-ATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEM 364

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           + ++V      +   L A A L A+E  + +H +     L   VI+GT L+D Y K G +
Sbjct: 365 QGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCI 424

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DA + F E++ V N+  W A++ G A  G     LELF  +      P + +F+ VL A
Sbjct: 425 KDAVKAF-ESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLA 483

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +  L  E  +    M   Y + P +EHY C++  +GRAG +++A +    MP EP+A 
Sbjct: 484 CSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAV 543

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VWRALLS   +H   ++  +  K+++ ++P     Y++++N  + VG+W   A VRK MK
Sbjct: 544 VWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMK 603

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           ++ V K  G S IE++G +  F A D  H +  +IY K+ E++E  + +GY+P   +   
Sbjct: 604 EKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARL 663

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V + EK+ ++ +HSEKLA+AFGL+   P G T+R+ KNLR+C DCH + K IS+V  RE
Sbjct: 664 DVDEYEKQVSVSHHSEKLAIAFGLMKSRP-GATIRLSKNLRVCIDCHSATKLISKVYNRE 722

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+H F +G C+C D W
Sbjct: 723 IIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 172/370 (46%), Gaps = 17/370 (4%)

Query: 44  SKSNLLSYSLRLFNHIPSP-------NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           + S  LSY++RLF   P P       NI+  + L + H     +L++F+ ML    +S  
Sbjct: 113 TSSAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPED--ALHLFVEMLDDTAVS-- 168

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+Q T+A+  K+C+ +      G  + + + K       F  ++L+H Y+       A  
Sbjct: 169 PDQHTVANTVKSCSRMCD-LSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHV 227

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +F  ++ + V+ + AMI G+ +N    + + +F  M           +     A   L  
Sbjct: 228 LFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGD 287

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
               + I  +A   G+ R+  + T L+D Y K G +  ARR+FD  +   + +AW+AM++
Sbjct: 288 ANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDR-MHSRDVVAWSAMIS 346

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GY Q       L +F+ ++     P++ + ++VL+A C    A E+ KW+     R  L 
Sbjct: 347 GYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSA-CAVLGALETGKWVHSYIRRKDLP 405

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
             +   T L+    + G ++DA +   +MP   +   W AL+   A +G++  A ++   
Sbjct: 406 LTVILGTALVDFYAKCGCIKDAVKAFESMPVR-NTWTWTALIKGMASNGRSREALELFSS 464

Query: 397 LIDIN--PYD 404
           +++ N  P D
Sbjct: 465 MLEANIEPTD 474


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 312/598 (52%), Gaps = 44/598 (7%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPS----PNIVSWTALIS 72
           R+  AR +    +D+ +   + L+  Y++   L   +R+ + + S     NIVSW  ++S
Sbjct: 166 RMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILS 225

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
             + S       +   +   L F P+Q T++S+  +    S     G  +H   +K  L 
Sbjct: 226 GFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGD-SEMLNMGRLIHGYVIKQGLL 284

Query: 133 DKPFCGSALVHFY-------------------------------SRFRSPDNAKKVFDEI 161
                 SA++  Y                               SR    D A ++F+  
Sbjct: 285 KDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELF 344

Query: 162 RER----DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           +E+    +VV + ++I G AQN + +++L +F +M+ + V      +   L A   +AA+
Sbjct: 345 KEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAAL 404

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
              R  HG AV   L  NV VG+ LID Y K G ++ ++ VF+  +   N + WN++M G
Sbjct: 405 GHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNM-MPTKNLVCWNSLMNG 463

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           ++  G    V+ +F  L      PD  SF ++L+A    GL  E  K+ + M   Y ++P
Sbjct: 464 FSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKP 523

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            LEHY+C+++ +GRAG+L++A  +   MPFEPD+ VW ALL+   +    D+A    ++L
Sbjct: 524 RLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKL 583

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
             + P +   YV+++N+ +  G W EV  +R  M+   ++K  G SWI+VK +V+  LAG
Sbjct: 584 FHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAG 643

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
           D+ H + + I  K+ E+ +E  + G+ P  D  LH+V ++E+ + LW HSEKLA+ FGL+
Sbjct: 644 DKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLL 703

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +  P G  L+++KNLRIC DCH   K+IS    REI +RD NR+H F +G C+CGD W
Sbjct: 704 N-TPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 205/472 (43%), Gaps = 81/472 (17%)

Query: 22  HARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           HAR LKS +Q D  I   LI +YS  N  + +  +   IP P I S+++LI A + + L 
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S+ +F  M  H     +P+   L +LFK CA LS AF  G  +H +S    L    F 
Sbjct: 98  TQSIGVFSRMFSH---GLIPDSHVLPNLFKVCAELS-AFKVGKQIHCVSCVSGLDMDAFV 153

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
             ++ H Y R     +A+KVFD + ++DVV   A++  +A+   L + + + ++M SS +
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI 213

Query: 198 GSTM------------------------------YC-----VSGALRAAAELAAMEQCRV 222
            + +                              +C     VS  L +  +   +   R+
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKA----GIVS------------------------- 253
           IHG+ +  GL ++  V + +ID YGK+    GI+S                         
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333

Query: 254 -----DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
                +   +F E    LN ++W +++AG AQ G     LELF  +++ G  P+  +  +
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           +L A  N    G   +      VR  L   +   + LI    + GR+  ++ +   MP +
Sbjct: 394 MLPACGNIAALGHG-RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
            +   W +L++  ++HGKA     + + L+      D  ++   ++LS  G+
Sbjct: 453 -NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD--FISFTSLLSACGQ 501


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 186/549 (33%), Positives = 283/549 (51%), Gaps = 37/549 (6%)

Query: 62  PNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
           PN+++W  L+S  + S  + +  +++        L    T  S   +          G  
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQ 178

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           LH  ++K          +AL+  Y +        +VFDE    DV    A+I G ++N++
Sbjct: 179 LHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQ 238

Query: 182 LVDSLSVFAD-----------------------------------MRSSDVGSTMYCVSG 206
           + ++L +F +                                   M++         +  
Sbjct: 239 VCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPC 298

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A A +AA+   R  H  A+  G   +V V + L+D Y K G V DAR +FD  +S  
Sbjct: 299 VLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVS-R 357

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N ++WNAM+ GYA  G+    + +FH +      PD  +F  +L A   AGL  E   + 
Sbjct: 358 NVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYF 417

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           + M   Y + P +EHY C+++ +GRAG+L++A  +   MPFEPDA +W +LL    +HG 
Sbjct: 418 KEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGN 477

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            D+A    ++L  + P +   YV+++N+ +    WD V  VR++MKD  ++KE G SWIE
Sbjct: 478 VDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIE 537

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           +K KVH+ LAGD  H     I  K+ +L  +  +LG+VP  D +LH+V ++EK + L  H
Sbjct: 538 IKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVH 597

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+A GL+S +P G TLR++KNLRIC DCHE+ K+IS    REI VRD NR+H F  
Sbjct: 598 SEKLAVALGLISTSP-GTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSG 656

Query: 567 GSCTCGDLW 575
           G C+CGD W
Sbjct: 657 GKCSCGDFW 665



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 151/379 (39%), Gaps = 93/379 (24%)

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           LRH  +SF P+   L + FK+C +L        +LH+++    L   PF  S+L+H Y R
Sbjct: 11  LRH--VSFPPDPHLLPTAFKSCPTLP----LARALHAVAEVSGLARDPFVASSLLHAYLR 64

Query: 148 FRSPDNAKKVFD---------------------------------EIR-----ERDVVCY 169
             +  NA+ +FD                                 E+R     E +V+ +
Sbjct: 65  LGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITW 124

Query: 170 GAMIVGFAQNSRLVDSLSVFADMRSSDV-GSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
             ++ G  ++ R  D++   A M    +       VS AL A  ++  +   + +HG+AV
Sbjct: 125 NGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAV 184

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE------------------NLSV----- 265
            +G   +  V T LID YGK G  ++  RVFDE                  N  V     
Sbjct: 185 KAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALR 244

Query: 266 -----------LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
                      LN ++W +++A   Q G     +E F  ++ +G  P+  +   VL A  
Sbjct: 245 LFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFA 304

Query: 315 N--AGLAGESEKWIERMKVRYKLEPGLEH----YTCLISAMGRAGRLEDAERIAMAMPFE 368
           N  A + G S          + L  G  H     + L+    + GR++DA RI       
Sbjct: 305 NVAALMHGRSAHC-------FALRKGFLHDVYVSSALVDMYAKCGRVKDA-RIIFDTMVS 356

Query: 369 PDAAVWRALLSFSAIHGKA 387
            +   W A++   A++G+A
Sbjct: 357 RNVVSWNAMIGGYAMYGEA 375



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 21/223 (9%)

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS-IAWNAMMAGYA 279
           R +H  A VSGL R+  V + L+  Y + G   +AR +FD       + + W+A++A +A
Sbjct: 37  RALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHA 96

Query: 280 QQGDQSTVLELFHLLEMR---GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
            +GD      L  L EMR   G  P+  ++  +++ L  +G A ++   +  M     L 
Sbjct: 97  ARGDAEGAWRL--LEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLR 154

Query: 337 PGLEHYTCLISAMGRAGRLEDAERI---AMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           P     +C +SA+G  G +   +++   A+      DA V  AL+         DM  K 
Sbjct: 155 PDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALI---------DMYGKC 205

Query: 394 GKRLIDINPYDDSAYVIVAN---VLSGVGRWDEVAEVRKVMKD 433
           G+    +  +D+S+++ VA+   +++G+ R  +V E  ++ K+
Sbjct: 206 GQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKE 248



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 5/199 (2%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP----NIVSWTALISAHSNSPLSLN 82
           +SS  D +  N LI   S++  +  +LRLF          N+VSWT++++    +   L 
Sbjct: 217 ESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLE 276

Query: 83  IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142
                         PN  T+  +    A+++ A + G S H  +L+       +  SALV
Sbjct: 277 AVEFFREMQAQGTEPNSVTIPCVLPAFANVA-ALMHGRSAHCFALRKGFLHDVYVSSALV 335

Query: 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
             Y++     +A+ +FD +  R+VV + AMI G+A     V+++ +F  M        M 
Sbjct: 336 DMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMV 395

Query: 203 CVSGALRAAAELAAMEQCR 221
             +  L A  +    E+ R
Sbjct: 396 TFTCLLAACTQAGLTEEGR 414


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 190/566 (33%), Positives = 312/566 (55%), Gaps = 30/566 (5%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +H+ AL+   A D  +   L+  Y+KSN+   + Y+ ++F  +   +++SWTALIS +  
Sbjct: 276 LHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQ 335

Query: 77  SPLSLN----IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           S +  N    +F  ML     S  PN  T +S+ K CA++S     G  +H+  +K +  
Sbjct: 336 SGVQENKVMVLFGEMLNE---SIKPNHITYSSILKACANISD-HDSGRQVHAHVIKSNQA 391

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                G+ALV  Y+     + A++VF+++ ER ++            S + +      D 
Sbjct: 392 AAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI------------SCITEGRDAPLDH 439

Query: 193 RSS--DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           R    D+G +    +  + AAA +  + + + +H   + +G   +  V   L+  Y + G
Sbjct: 440 RIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCG 499

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            + DA R F+E L   N I+W +M++G A+ G     L LFH + + G  P++ +++AVL
Sbjct: 500 YLEDACRSFNE-LKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVL 558

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  + GL  E +++   M+  + L P +EHY C++  + R+G +++A      MP + D
Sbjct: 559 SACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKAD 618

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A VW+ LL     H   ++     K +I++ P D + YV+++N+ +  G WDEVA +R  
Sbjct: 619 ALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSA 678

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           M+D  + KE G SW+EV+   H F AGD  H R +DIY KL  L+ E + +GYVP    +
Sbjct: 679 MRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIV 738

Query: 491 LHNVGDREKREALWYHSEKLALAFGLV-SGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           LH++ D  K + L  HSEK+A+AFGL+ + AP  K +RI KNLR+C DCH + KY+S+  
Sbjct: 739 LHDMSDELKEQYLLQHSEKIAVAFGLITTSAP--KPIRIFKNLRVCADCHSAIKYMSKAT 796

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
            REI++RD NR+HR  +G C+CG+ W
Sbjct: 797 RREIILRDSNRFHRMKDGECSCGEYW 822



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 158/351 (45%), Gaps = 10/351 (2%)

Query: 19  RIVHARALKSSQADRS--IYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISAHS 75
           R +H R L+    DR   + N+L+T YS+   ++ +  +F+ +    +IVSWTA+ S  +
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +       L +        LPN  TL ++   C       L G  +  L  K+ L    
Sbjct: 128 RNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTD 187

Query: 136 FC-GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              GSAL+   +R     +A+KVFD + E+ VV +  +I  + Q     +++ +F D   
Sbjct: 188 IAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLE 247

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI--- 251
                  Y +S  + A  EL ++     +H  A+  G   +  V  GL+D Y K+ I   
Sbjct: 248 DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQA 307

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ-STVLELFHLLEMRGFAPDEYSFLAVL 310
           +  A +VF E +   + I+W A+++GY Q G Q + V+ LF  +      P+  ++ ++L
Sbjct: 308 MDYANKVF-ERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSIL 366

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
            A  N     +S + +    ++            L+S    +G +E+A R+
Sbjct: 367 KACANIS-DHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRV 416


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 162/437 (37%), Positives = 260/437 (59%), Gaps = 2/437 (0%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +ALV  Y++    D A  VF+++ ++DV+ + +++ G   N    ++L +F +MR   + 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                ++  L A AEL  +E  + +H + + SGL  ++ V   L+  Y K G + DA +V
Sbjct: 66  PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKV 125

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD ++ + + I W A++ GYAQ G     L  ++ +   G  PD  +F+ +L A  +AGL
Sbjct: 126 FD-SMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGL 184

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
                 + + M+  Y ++PG EHY C+I  +GR+G+L +A+ +   M  +PDA VW+ALL
Sbjct: 185 VEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALL 244

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
           +   +HG  ++  +    L ++ P +   YV+++N+ S  G+W+E A+ R++MK R V K
Sbjct: 245 AACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSK 304

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
           E G SWIE+  KVH F++ DR H RT +IY+K+ E+M   +  GYVP  +  LH++ +  
Sbjct: 305 EPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEG 364

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K   L YHSEKLA+AFGL++  P G  +RI KNLRIC DCH + KY+S V  R +++RD 
Sbjct: 365 KELGLAYHSEKLAVAFGLLT-MPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDS 423

Query: 559 NRYHRFLNGSCTCGDLW 575
           N +H F  G+C+C D W
Sbjct: 424 NCFHHFREGACSCSDYW 440



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 150/318 (47%), Gaps = 28/318 (8%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HSNS-PLSLNIFLSMLRHP 91
           + N L+  Y+K     Y+  +F  +   +++SWT+L++   H+ S   +L +F  M    
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEM---R 60

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            +   P+Q  +A++   CA L+    FG  +H+  LK  L       ++LV  Y++    
Sbjct: 61  IMGIHPDQIVIAAVLSACAELT-VLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCI 119

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           ++A KVFD +  +DV+ + A+IVG+AQN R  +SL+ + BM +S V        G L A 
Sbjct: 120 EDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFAC 179

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYGKAGIVSDARRVFDENLSV 265
           +    +E     HG +    ++    +  G      +ID  G++G + +A+ + ++    
Sbjct: 180 SHAGLVE-----HGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQ 234

Query: 266 LNSIAWNAMMAGYAQQGD----QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            ++  W A++A     G+    +     LF  LE +   P  Y  L+ L +   AG   E
Sbjct: 235 PDATVWKALLAACRVHGNVELGERAANNLFE-LEPKNAVP--YVLLSNLYS--AAGKWEE 289

Query: 322 SEKWIERMKVR-YKLEPG 338
           + K    MK+R    EPG
Sbjct: 290 AAKTRRLMKLRGVSKEPG 307


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 307/559 (54%), Gaps = 6/559 (1%)

Query: 19  RIVHAR-ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA+ A   +  + ++ N L+  Y +   L  +  LF+ +   +  SW+ ++  ++  
Sbjct: 70  RQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKV 129

Query: 78  PLSLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               + F  M R    S  P +  +   + + C  L      G  +H ++LK  L    F
Sbjct: 130 GNFFSCFW-MFRELLRSGAPLDDYSAPVVIRACRDLKD-LKCGRLIHCITLKCGLDYGHF 187

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             + LV  Y+R +  ++A ++F ++ +RD+  +  MI   A++   V+SL  F  MR+  
Sbjct: 188 VCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQG 247

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      +   + A A+L AM + + IH +   +G   +VI+GT +ID Y K G V  AR
Sbjct: 248 IVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESAR 307

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +FD  + V N I W+AM+A Y   G     LELF ++   G  P+  +F+++L A  +A
Sbjct: 308 WIFDR-MQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHA 366

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E +++   M   Y + P ++HYTC++  +GRAGRL++A  +   MP E D  +W A
Sbjct: 367 GLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGA 426

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    IH   D+A ++ + L+ +       YV+++N+ +  G+W+++A+ R +M    +
Sbjct: 427 LLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGL 486

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           RK  GR+WIEV  K++ F  GD+ H R+ +IY  L  L E+ E  GY P  +++L++V +
Sbjct: 487 RKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDE 546

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K+  L+ HSEKLA+AFGL+   P+G  +RI KNLR+C DCH   K++S + ++ I+VR
Sbjct: 547 EVKQGLLYSHSEKLAIAFGLLV-LPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVR 605

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F  G C+C D W
Sbjct: 606 DAKRFHHFKEGVCSCRDYW 624



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 7/169 (4%)

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           Q R +H     +G  RN+ V   L+  Y + G + DA+ +FD  +S  +  +W+ ++ GY
Sbjct: 68  QVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFD-GMSKRHPYSWSVIVGGY 126

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A+ G+  +   +F  L   G   D+YS   V+ A C      +  + I  + ++  L+ G
Sbjct: 127 AKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRA-CRDLKDLKCGRLIHCITLKCGLDYG 185

Query: 339 LEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
             H+ C  L+    R   +EDA +I + M ++ D A W  ++   A  G
Sbjct: 186 --HFVCATLVDMYARCKVVEDAHQIFVKM-WKRDLATWTVMIGALAESG 231


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 298/559 (53%), Gaps = 10/559 (1%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
            +H + LK+  Q +  + + LI  Y+K   L ++L++F  +   ++VSWTA+I+    H  
Sbjct: 495  IHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEK 554

Query: 77   SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               +LN+F  M      S   +    AS    CA +  A   G  +H+ +      D   
Sbjct: 555  FAEALNLFKEMQDQGIHS---DNIGFASAISACAGI-QALNQGQQIHAQACVSGYSDDLS 610

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             G+ALV  Y+R     +A   FD+I  +D + + ++I GFAQ+    ++LS+F+ M  + 
Sbjct: 611  VGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAG 670

Query: 197  VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                 +    A+ AAA +A ++  + IH   + +G D    V   LI  Y K G + DA 
Sbjct: 671  QEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAE 730

Query: 257  RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            R F E +   N I+WNAM+ GY+Q G     L LF  ++  G  P+  +F+ VL+A  + 
Sbjct: 731  RQFFE-MPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHV 789

Query: 317  GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            GL  E  K+ + M+  + L P  EHY C++  +GR+G L  A R    MP +PDA V R 
Sbjct: 790  GLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRT 849

Query: 377  LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            LLS   +H   D+       L+++ P D + YV+++N+ +  G+W      R++MKDR V
Sbjct: 850  LLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGV 909

Query: 437  RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            +KE GRSWIEV   VH F AGD+ H   + IY  L +L E     GY+P  + +L++   
Sbjct: 910  KKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAER 969

Query: 497  REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            R+K      HSEKLA+AFGL+S       + + KNLR+C DCH   KY+S++ +R IVVR
Sbjct: 970  RQKGPTQIIHSEKLAIAFGLLS-LSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVR 1028

Query: 557  DVNRYHRFLNGSCTCGDLW 575
            D  R+H F  G C+C D W
Sbjct: 1029 DSYRFHHFKGGICSCKDYW 1047



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 198/417 (47%), Gaps = 12/417 (2%)

Query: 22  HARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NS 77
           H+ A+K+   +D  +   L+  Y K + +  +   F    + N+V W  ++ A+    N 
Sbjct: 395 HSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNL 454

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S  IF  M         PNQ T  S+ +TC+SL  A   G  +H+  LK       + 
Sbjct: 455 NESFKIFTQMQME---GIEPNQFTYPSILRTCSSL-RAVDLGEQIHTQVLKTGFQFNVYV 510

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            S L+  Y++    D+A K+F  ++E+DVV + AMI G+AQ+ +  ++L++F +M+   +
Sbjct: 511 SSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGI 570

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            S     + A+ A A + A+ Q + IH  A VSG   ++ VG  L+  Y + G V DA  
Sbjct: 571 HSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYF 630

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            FD+  S  N I+WN++++G+AQ G     L LF  +   G   + ++F     +     
Sbjct: 631 AFDKIFSKDN-ISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTF-GPAVSAAANV 688

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              +  K I  M ++   +   E    LI+   + G ++DAER    MP E +   W A+
Sbjct: 689 ANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMP-EKNEISWNAM 747

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDEVAEVRKVMKD 433
           L+  + HG    A  + + +  +    +   +V V +  S VG  DE  +  + M++
Sbjct: 748 LTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMRE 804



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 176/387 (45%), Gaps = 5/387 (1%)

Query: 21  VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HAR +     +   + N LI  Y K+  L+ + ++F+ +   + VSW A++S  S S  
Sbjct: 192 IHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGC 251

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                L   +  T    P     +S+   C  +   +  G  LH L LK     + +  +
Sbjct: 252 EEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEF-YKVGEQLHGLVLKQGFSLETYVCN 310

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV  YSR  +   A++VF+ + +RD V Y ++I G +Q      +L +F  M    +  
Sbjct: 311 ALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKP 370

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               V+  L A + + A+   +  H +A+ +G+  ++I+   L+D Y K   +  A   F
Sbjct: 371 DCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFF 430

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
             +    N + WN M+  Y    + +   ++F  ++M G  P+++++ ++L   C++  A
Sbjct: 431 -LSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRT-CSSLRA 488

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +  + I    ++   +  +   + LI    + G+L+ A +I   +  E D   W A+++
Sbjct: 489 VDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIA 547

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDS 406
             A H K   A  + K + D   + D+
Sbjct: 548 GYAQHEKFAEALNLFKEMQDQGIHSDN 574



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 168/389 (43%), Gaps = 11/389 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LK     +  + N L+T YS+      + ++FN +   + VS+ +LIS  S    
Sbjct: 293 LHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGY 352

Query: 80  SLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
           S +  L + +   L  L P+  T+ASL   C+S+  A L G   HS ++K  +       
Sbjct: 353 S-DKALELFKKMCLDCLKPDCVTVASLLSACSSVG-ALLVGKQFHSYAIKAGMSSDIILE 410

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
            AL+  Y +      A + F      +VV +  M+V +     L +S  +F  M+   + 
Sbjct: 411 GALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIE 470

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
              +     LR  + L A++    IH   + +G   NV V + LID Y K G +  A ++
Sbjct: 471 PNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKI 530

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F   L   + ++W AM+AGYAQ    +  L LF  ++ +G   D   F + ++A C    
Sbjct: 531 F-RRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISA-CAGIQ 588

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           A    + I            L     L+S   R G++ DA   A    F  D   W +L+
Sbjct: 589 ALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDA-YFAFDKIFSKDNISWNSLI 647

Query: 379 SFSAIHGKADMA----SKMGKRLIDINPY 403
           S  A  G  + A    S+M K   +IN +
Sbjct: 648 SGFAQSGHCEEALSLFSQMSKAGQEINSF 676



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 142/335 (42%), Gaps = 13/335 (3%)

Query: 68  TALISAHSNSPLSLN--IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL 125
           TAL  A+SN     N   FL ++    +    N +T   L   C S S  F  G  LH  
Sbjct: 37  TALSYAYSNDEGEANGINFLHLMEERGVR--ANSQTYLWLLDGCLS-SGWFSDGWKLHGK 93

Query: 126 SLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDS 185
            LK+    +      L+  Y  F   D A  VFDE+  R + C+  ++  F         
Sbjct: 94  ILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRV 153

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC-RVIHGHAVVSGLDRNVIVGTGLID 244
           L +F  M    V       +G LR          C   IH   +  G + ++ V   LID
Sbjct: 154 LGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLID 213

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G ++ A++VFD  L   +S++W AM++G +Q G +   + LF  +   G  P  Y
Sbjct: 214 LYFKNGFLNSAKKVFD-GLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPY 272

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIA 362
            F +VL+A          E   +   +  K    LE Y C  L++   R G    AE++ 
Sbjct: 273 IFSSVLSACTKVEFYKVGE---QLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVF 329

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            AM  + D   + +L+S  +  G +D A ++ K++
Sbjct: 330 NAM-LQRDEVSYNSLISGLSQQGYSDKALELFKKM 363



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 141/306 (46%), Gaps = 8/306 (2%)

Query: 16  TDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           +D   +H + LK    A+  +   L+  Y     L  ++ +F+ +P   +  W  ++   
Sbjct: 85  SDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRF 144

Query: 75  SNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
               ++   L +F  ML+       P++RT A + + C      F     +H+ ++    
Sbjct: 145 VAGKMAGRVLGLFRRMLQEKVK---PDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGY 201

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
            +  F  + L+  Y +    ++AKKVFD +++RD V + AM+ G +Q+    +++ +F  
Sbjct: 202 ENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQ 261

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M +S V  T Y  S  L A  ++   +    +HG  +  G      V   L+  Y + G 
Sbjct: 262 MHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGN 321

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
              A +VF+  L   + +++N++++G +QQG     LELF  + +    PD  +  ++L+
Sbjct: 322 FIPAEQVFNAMLQ-RDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLS 380

Query: 312 ALCNAG 317
           A  + G
Sbjct: 381 ACSSVG 386


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 304/565 (53%), Gaps = 15/565 (2%)

Query: 21  VHARALKSSQADRSIYNNLIT--NYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HSN 76
           +HA+ +KS Q  R+ ++ L T    S S  L+Y+  L N  PS N   +  +I A  H++
Sbjct: 7   LHAQFIKS-QNQRN-FSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRAYSHTS 64

Query: 77  SPL----SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           +P     +L++F+ ML+  T    P+  T +   K+C  L         LH    K+   
Sbjct: 65  NPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQ-AKQLHGFINKMGFG 123

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              +  +AL+H YS       A++VFD +  RDVV + +MI GF  +   V+++ +F  M
Sbjct: 124 FDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRM 183

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
               V      V   LR  A+  A+   R +HG     G+D    V T LI  Y K G +
Sbjct: 184 LEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCL 243

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD+ L   +   W AM+ G A  G     +ELF  +E     PDE + + VL+A
Sbjct: 244 ESAREVFDDVLD-RDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSA 302

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             NAGL  E   +   ++ RY ++P ++H+ C++  + + G LE+AE    AMP +PDA 
Sbjct: 303 YRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAV 362

Query: 373 VWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           +WR L+    +H   + A ++ K   L  ++ +D  +Y++ +NV +  G+W + AEVR++
Sbjct: 363 IWRTLIWACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVREL 422

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           M  + + K  G S IEV G VH F+ GD  H  TE I+ KL +++++  + GY P   E+
Sbjct: 423 MNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEV 482

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           +  + D EK   L +HSEKLALA+GL+   P G  +RIVKNLR C DCHE  K IS+V +
Sbjct: 483 MLEMDDEEKAIQLLHHSEKLALAYGLIRTCP-GSKIRIVKNLRSCEDCHEFMKLISKVYQ 541

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           R+I+VRD  R+H F NG C+C D W
Sbjct: 542 RDIIVRDRIRFHHFKNGDCSCKDYW 566


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 181/568 (31%), Positives = 312/568 (54%), Gaps = 21/568 (3%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAH-SN 76
           +H+ A++S   D  +  +L+  Y+K +    +    ++F+ +   +++SWTALI+ +  N
Sbjct: 291 LHSWAIRSGLVD-DVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN 349

Query: 77  SPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
             L+   +N+F  M+    +   PN  T +S FK C +LS   + G  +   + K  L  
Sbjct: 350 CNLATEAINLFSEMITQGHVE--PNHFTFSSAFKACGNLSDPRV-GKQVLGQAFKRGLAS 406

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                ++++  + +    ++A++ F+ + E+++V Y   + G  +N     +  + +++ 
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEIT 466

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             ++G + +  +  L   A + ++ +   IH   V  GL  N  V   LI  Y K G + 
Sbjct: 467 ERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSID 526

Query: 254 DARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
            A RVF+  EN +V   I+W +M+ G+A+ G    VLE F+ +   G  P+E +++A+L+
Sbjct: 527 TASRVFNFMENRNV---ISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILS 583

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  E  +    M   +K++P +EHY C++  + RAG L DA      MPF+ D 
Sbjct: 584 ACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADV 643

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            VWR  L    +H   ++     +++++++P + +AY+ ++N+ +  G+W+E  E+R+ M
Sbjct: 644 LVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKM 703

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           K+R + KEGG SWIEV  K+H F  GD  H     IY +L  L+ E +R GYVP  D +L
Sbjct: 704 KERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVL 763

Query: 492 HNVGDREKREA----LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
           H + +          L+ HSEK+A+AFGL+S   + + +R+ KNLR+C DCH + KYIS 
Sbjct: 764 HKLEEENDEAEKERLLYQHSEKIAVAFGLIS-TSKSRPVRVFKNLRVCGDCHNAMKYIST 822

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           V  REIV+RD+NR+H F +G C+C D W
Sbjct: 823 VSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 175/359 (48%), Gaps = 28/359 (7%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHI---PSPNIVSWTALISAH 74
           ++VHAR ++   + D  +YN+LI+ YSKS   + +  +F  +      ++VSW+A+++ +
Sbjct: 82  KLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACY 141

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            N+   L+     +    L  +PN     ++ + C++     +  ++L  L +K    + 
Sbjct: 142 GNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFL-MKTGHFES 200

Query: 135 PFC-GSALVHFYSRFR-SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
             C G +L+  + +   S +NA KVFD++ E +VV +  MI    Q     +++  F DM
Sbjct: 201 DVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDM 260

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA--- 249
             S   S  + +S    A AEL  +   + +H  A+ SGL  +  V   L+D Y K    
Sbjct: 261 VLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSAD 318

Query: 250 GIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQST-VLELFHLLEMRGFA-PDEYS 305
           G V D R+VFD  E+ SV+   +W A++ GY +  + +T  + LF  +  +G   P+ ++
Sbjct: 319 GSVDDCRKVFDRMEDHSVM---SWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFT 375

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT----CLISAMGRAGRLEDAER 360
           F +   A  N      S+  + +  +    + GL   +     +IS   ++ R+EDA+R
Sbjct: 376 FSSAFKACGNL-----SDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQR 429



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 130/287 (45%), Gaps = 14/287 (4%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T +SL K+C   +  F  G  +H+  ++  +       ++L+  YS+      A+ VF+ 
Sbjct: 64  TFSSLLKSCIR-ARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFET 122

Query: 161 IR---ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           +R   +RDVV + AM+  +  N R +D++ VF +     +    YC +  +RA +    +
Sbjct: 123 MRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182

Query: 218 EQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKA-GIVSDARRVFDENLSVLNSIAWNAMM 275
              RV  G  + +G  + +V VG  LID + K      +A +VFD+ +S LN + W  M+
Sbjct: 183 GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK-MSELNVVTWTLMI 241

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA---LCNAGLAGESEKWIERMKVR 332
               Q G     +  F  + + GF  D+++  +V +A   L N  L  +   W  R  + 
Sbjct: 242 TRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLV 301

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             +E  L       SA    G ++D  ++   M  +     W AL++
Sbjct: 302 DDVECSLVDMYAKCSA---DGSVDDCRKVFDRME-DHSVMSWTALIT 344


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 189/535 (35%), Positives = 300/535 (56%), Gaps = 8/535 (1%)

Query: 44  SKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSNSP-LSLNIFLSMLRHPTLSFLPNQR 100
           S S  +S++ ++FN I +PNI +W  +I   A S +P  ++ +F  M  H   S LP+  
Sbjct: 80  SLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQM--HAASSILPDTH 137

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T   LFK  A L    L G  +HS+ ++       F  ++LVH YS   S  +A +VF+ 
Sbjct: 138 TFPFLFKAVAKLMDVSL-GEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEI 196

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           +  RD V + ++I GFA N    ++L+++ +M S  V    + +   L A  EL A+   
Sbjct: 197 MSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG 256

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
             +H + V  GL +N      L+D Y K G   DA++VFDE +   + ++W +++ G A 
Sbjct: 257 ERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDE-MEERSVVSWTSLIVGLAV 315

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G  +  L+LF  LE +G  P E +F+ VL A  + G+  E   +  RMK  Y + P +E
Sbjct: 316 NGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIE 375

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           H+ C++  + RAG++ DA      MP  P+A +WR LL    IHG  ++       +  +
Sbjct: 376 HHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRL 435

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
                  +V+++N+ +   RW +V  VRK+M  + V+K  G S +E+K +V+ F+ GDR 
Sbjct: 436 EQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRS 495

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGA 520
           H ++E+ Y  LA++ +  +  GYVP    +L ++ + EK  AL +H+EK+A+AF LV+  
Sbjct: 496 HPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVN-T 554

Query: 521 PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           P G  +RI+KNLR+C DCH + K IS+V EREI+VRD +R+H F +GSC+C D W
Sbjct: 555 PPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 116/256 (45%), Gaps = 12/256 (4%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH-P 91
           R + N+L+  YS    L  + ++F  +   + V+W ++I+  + + +  N  L++ R   
Sbjct: 171 RFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMP-NEALTLYREMG 229

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
           +    P+  T+ SL   C  L  A   G  +H   +K+ L       +AL+  YS+  + 
Sbjct: 230 SEGVEPDGFTMVSLLSACVELG-ALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNF 288

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
            +A+KVFDE+ ER VV + ++IVG A N    ++L +F ++    +  +     G L A 
Sbjct: 289 RDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYAC 348

Query: 212 AELAAMEQC-----RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           +    +++      R+   + ++  ++ +      ++D   +AG V DA           
Sbjct: 349 SHCGMLDEGFNYFRRMKEEYGILPRIEHH----GCMVDLLCRAGKVGDAYDYIRNMPVPP 404

Query: 267 NSIAWNAMMAGYAQQG 282
           N++ W  ++      G
Sbjct: 405 NAVIWRTLLGACTIHG 420


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 191/566 (33%), Positives = 318/566 (56%), Gaps = 20/566 (3%)

Query: 21  VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS-- 77
           +H  A+K    D   + N +I  Y K  +L    ++F+ + S ++V+W ++IS H     
Sbjct: 192 MHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQ 251

Query: 78  -PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKP 135
              ++ +F  M R   +S  P+  TL SL    A        G S+H   ++        
Sbjct: 252 VASAVEMFCGM-RDSGVS--PDVLTLLSLASAIAQCGD-ICGGRSVHCYMVRRGWDVGDI 307

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             G+A+V  Y++    + A+++FD +  RD V +  +I G+ QN    +++ V+  M+  
Sbjct: 308 IAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKH 367

Query: 196 D----VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           +    +  T   V   L A + L A++Q   +H  ++ +GL+ +V VGT +ID Y K G 
Sbjct: 368 EGLKPIQGTFVSV---LPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGK 424

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + +A  +F E     ++  WNA+++G    G  +  L LF  ++  G +PD  +F+++L 
Sbjct: 425 LDEAMLLF-EQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLA 483

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  +AGL  +   +   M+  Y ++P  +HY C++   GRAG+L+DA      MP +PD+
Sbjct: 484 ACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDS 543

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           A+W ALL    IHG  +M     + L +++P +   YV+++N+ + VG+WD V EVR ++
Sbjct: 544 AIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLV 603

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRM--HERTEDIYTKLAELMEECERLGYVPVWDE 489
           + + ++K  G S IEVK  V+VF +G++M  H + E+I  +L +L+ +   LGYVP +  
Sbjct: 604 RRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSF 663

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +L +V + EK + L  HSE+LA+AFG+++  PR   L I KNLR+C DCH + KYIS++ 
Sbjct: 664 VLQDVEEDEKEQILNNHSERLAIAFGIINTPPR-TPLHIYKNLRVCGDCHNATKYISKIT 722

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
           EREI+VRD NR+H F +G C+CGD W
Sbjct: 723 EREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 136/274 (49%), Gaps = 9/274 (3%)

Query: 121 SLHSLSLKLSL-HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
            LH+ +L+L L     F   ALVH Y RF    +A + FDE+R RDV  + AM+ G  +N
Sbjct: 89  QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRN 148

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
           +R  +++ +F  M    V      VS  L     L        +H +AV  GLD  + V 
Sbjct: 149 ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVC 208

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
             +ID YGK G++ + R+VFD  +S  + + WN++++G+ Q G  ++ +E+F  +   G 
Sbjct: 209 NAMIDVYGKLGMLEEVRKVFD-GMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGV 267

Query: 300 APDEYSFLAVLTALCNAG--LAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLE 356
           +PD  + L++ +A+   G    G S   +    VR   + G +     ++    +  ++E
Sbjct: 268 SPDVLTLLSLASAIAQCGDICGGRS---VHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIE 324

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            A+R+  +MP   DA  W  L++    +G A  A
Sbjct: 325 AAQRMFDSMPVR-DAVSWNTLITGYMQNGLASEA 357


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 210/606 (34%), Positives = 315/606 (51%), Gaps = 57/606 (9%)

Query: 16  TDPRIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA 73
           T  + +HA+ +    A + S+   LI +Y     LS++  +F+  PS P  + W  +I A
Sbjct: 69  TQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQA 128

Query: 74  HSNSPLS---LNIFLSMLRH--PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           +S +P S   L +F  ML H  PT +   ++ T   +F  C+       +G ++H + +K
Sbjct: 129 YSKTPSSQESLYLFHQMLAHGRPTSA---DKYTFTFVFTACSRHPTLRGYGENVHGMVVK 185

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV----- 183
                  F G++LV+ YS F    +AK+VFDE+ +RDV+ + +++ G+A    LV     
Sbjct: 186 DGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRAREL 245

Query: 184 --------------------------DSLSVFADMRSSD-VGSTMYCVSGALRAAAELAA 216
                                     ++L  F DM   D V      +   L A A L A
Sbjct: 246 FDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGA 305

Query: 217 MEQCRVIHGHAVVSGLDRNVI-----VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           ++Q + IH +     +D+N I     + T LID Y K G +  ARRVFD  L   + + W
Sbjct: 306 LDQGKWIHVY-----IDKNRILLSSNISTALIDMYAKCGRIDCARRVFD-GLHKRDLLTW 359

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            +M++G +  G  +  L  F  +   GF PD+ + L VL    ++GL  E       M  
Sbjct: 360 TSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIP 419

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            + + P LEHY CLI  +GRAGRLE A     +MP EPD   WRALLS   IHG  D+  
Sbjct: 420 LWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGE 479

Query: 392 KMGKRLIDINP-YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
           ++   + ++ P      YV+++N+ + +G+W+ V +VRK M  R      G SWIE+ G 
Sbjct: 480 RIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGV 539

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECE-RLGYVPVWDEMLHNVGDREKREALWYHSEK 509
           VH FLA D++H R  +I  KL E++       GYVP   ++L ++ + +K +A+ +HSEK
Sbjct: 540 VHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEK 599

Query: 510 LALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSC 569
           LA+AFGL+S   +  T+RI KNLR C DCH + K IS V  REIVVRD +R+H F  G+C
Sbjct: 600 LAVAFGLLS--TQEGTIRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNC 657

Query: 570 TCGDLW 575
           +C D W
Sbjct: 658 SCTDYW 663



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 139/332 (41%), Gaps = 44/332 (13%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           ++ Q + IH   V  GL +N  +   LI  Y     +S AR VFD+  S+  +I WN M+
Sbjct: 67  SLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMI 126

Query: 276 AGYAQQGDQSTVLELFH--LLEMRGFAPDEYSFLAVLTALC-NAGLAGESEKWIERMKVR 332
             Y++       L LFH  L   R  + D+Y+F  V TA   +  L G  E  +  M V+
Sbjct: 127 QAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGEN-VHGMVVK 185

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
              E  +     L++      R+ DA+R+   MP + D   W +++   A+ G+   A  
Sbjct: 186 DGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP-QRDVITWTSVVKGYAMRGELVRA-- 242

Query: 393 MGKRLIDINP-YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV---- 447
             + L D+ P  +D ++ ++     G   ++E  +    M      K      + +    
Sbjct: 243 --RELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSAC 300

Query: 448 -------KGK-VHVFLAGDRMHERTEDIYTKLAELMEECERLGY------------VPVW 487
                  +GK +HV++  +R+   + +I T L ++  +C R+              +  W
Sbjct: 301 AHLGALDQGKWIHVYIDKNRI-LLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTW 359

Query: 488 DEM-----LHNVGDREKREALWYHSEKLALAF 514
             M     +H +G     E LW  SE LA  F
Sbjct: 360 TSMISGLSMHGLG----AECLWTFSEMLAEGF 387


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 179/558 (32%), Positives = 308/558 (55%), Gaps = 5/558 (0%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + VH   + S  + D +  N LI  Y+K   L  S  +F+ +   + VSW ++I+ +  +
Sbjct: 395 KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQN 454

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S +  + + +       P+  T   L      L    L G  LH    K+  +     
Sbjct: 455 G-SFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXL-GKELHCDLAKMGFNSNIVV 512

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + LV  Y++     ++ KVF+ ++ RD++ +  +I     +      L + + MR+  V
Sbjct: 513 SNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV 572

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
              M  +   L   + LAA  Q + IHG     GL+ +V VG  LI+ Y K G + ++ +
Sbjct: 573 TPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQ 632

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF + +   + + W A+++     G+    +  F  +E  G  PD  +F+A++ A  ++G
Sbjct: 633 VF-KLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSG 691

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E   +  RMK  YK+EP +EHY C++  + R+  L+ AE   ++MP +PD+++W AL
Sbjct: 692 LVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGAL 751

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           LS   + G  ++A ++ +R+I++NP D   YV+V+NV + +G+WD+V  +RK +K R ++
Sbjct: 752 LSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLK 811

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K+ G SW+E++ KV+VF  G +  E+ E++   L  L     + GY+     +LH++ + 
Sbjct: 812 KDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDED 871

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           EKR+ L  HSE+LA+AFGL++  P G  L+++KNLR+C DCH   KYIS++ +RE++VRD
Sbjct: 872 EKRDILCGHSERLAIAFGLLNTKP-GTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRD 930

Query: 558 VNRYHRFLNGSCTCGDLW 575
            NR+H F +G+C+CGD W
Sbjct: 931 ANRFHVFKDGACSCGDYW 948



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 184/367 (50%), Gaps = 19/367 (5%)

Query: 60  PSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
           PS N+  W ++I A +++ L   +L+++    R   +   P+  T  S+   CA L   F
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQR---IRLQPDTYTFPSVINACAGLLD-F 190

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
               S+H   L +      + G+AL+  Y RF   D A+KVF+E+  RDVV + ++I G+
Sbjct: 191 EMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 250

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
             N    ++L ++   R+  V    Y +S  LRA   L ++E+  +IHG     G+ ++V
Sbjct: 251 NANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDV 310

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
           IV  GL+  Y K   + D RR+FD+ + + ++++WN M+ GY+Q G     ++LF  +EM
Sbjct: 311 IVNNGLLSMYCKFNGLIDGRRIFDK-MVLRDAVSWNTMICGYSQVGLYEESIKLF--MEM 367

Query: 297 -RGFAPDEYSFLAVLTALCNAGLAGESE--KWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
              F PD  +  ++L A    G  G+ E  K++    +    E        LI+   + G
Sbjct: 368 VNQFKPDLLTITSILQA---CGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCG 424

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIVA 412
            L  ++ +   M  + D+  W ++++    +G  D A K+ K +  D+ P D   YV++ 
Sbjct: 425 NLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKP-DSVTYVMLL 482

Query: 413 NVLSGVG 419
           ++ + +G
Sbjct: 483 SMSTQLG 489



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 174/382 (45%), Gaps = 17/382 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H R L     +D  I N LI  Y + N L  + ++F  +P  ++VSW +LIS ++ +  
Sbjct: 196 IHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 255

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                    R   L  +P+  T++S+ + C  L  +   G  +H L  K+ +       +
Sbjct: 256 WNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLG-SVEEGDIIHGLIEKIGIKKDVIVNN 314

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            L+  Y +F    + +++FD++  RD V +  MI G++Q     +S+ +F +M  +    
Sbjct: 315 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKP 373

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            +  ++  L+A   L  +E  + +H + + SG + +      LI+ Y K G +  ++ VF
Sbjct: 374 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 433

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL---TALCNA 316
              +   +S++WN+M+  Y Q G     ++LF +++     PD  +++ +L   T L + 
Sbjct: 434 -SGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMK-TDVKPDSVTYVMLLSMSTQLGDL 491

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            L  E    + +M     +         L+    + G + D+ ++   M    D   W  
Sbjct: 492 XLGKELHCDLAKMGFNSNIVVS----NTLVDMYAKCGEMGDSLKVFENMK-ARDIITWNT 546

Query: 377 LLSFSAIHGKADMASKMGKRLI 398
           +++ S +H +      +G R+I
Sbjct: 547 IIA-SCVHSE---DCNLGLRMI 564



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 10/261 (3%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNS 180
           LHSL + L LH      + L+  Y+ FR P ++  VF       +V  + ++I     N 
Sbjct: 94  LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNG 153

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              ++LS++++ +   +    Y     + A A L   E  + IH   +  G   ++ +G 
Sbjct: 154 LFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGN 213

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            LID Y +   +  AR+VF+E + + + ++WN++++GY   G  +  LE+++     G  
Sbjct: 214 ALIDMYCRFNDLDKARKVFEE-MPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 272

Query: 301 PDEYSFLAVLTALCNAGLAGESE---KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           PD Y+  +VL A    G   E +     IE++ ++  +         L+S   +   L D
Sbjct: 273 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVN----NGLLSMYCKFNGLID 328

Query: 358 AERIAMAMPFEPDAAVWRALL 378
             RI   M    DA  W  ++
Sbjct: 329 GRRIFDKMVLR-DAVSWNTMI 348


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 190/561 (33%), Positives = 311/561 (55%), Gaps = 9/561 (1%)

Query: 19  RIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH   +K   A+   +   L++ YSK   +  +  LF+ + +P++V++ ALIS +S +
Sbjct: 232 RCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVN 291

Query: 78  PLSLNIFLSMLRHPTLS-FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            + +   + + +  T S + PN  TL ++    +   H  L    LH+  +K  L     
Sbjct: 292 GM-VESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELL-ARCLHAFVVKARLDADAL 349

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +AL   Y R    ++A+ +FD + E+ +  + AMI G+AQN     ++++F  M+  +
Sbjct: 350 VSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELN 409

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      +S  L A A L A+   + +H       L+ NV V T LID Y K G +++AR
Sbjct: 410 VQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEAR 469

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCN 315
            +FD  +   N ++WNAM++GY   G  +  L+L+  +L+ R   P   +FL+V+ A  +
Sbjct: 470 SIFDR-MDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDAR-ILPTSSTFLSVIYACSH 527

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP-DAAVW 374
            GL  E +K    M   Y++ PG+EH TC++  +GRAG+L +A  +    P       VW
Sbjct: 528 GGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVW 587

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    +H  +D+A    ++L +++  +   YV+++N+ +    + E A VR+  K R
Sbjct: 588 GALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTR 647

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           ++ K  G + IE+  + HVF+AGD +H ++E IY+ L  L  +    GY PV +  L++V
Sbjct: 648 KLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDV 707

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + EK   +  HSEKLA+AFGL+S  P G  +RI+KNLR+C DCH + K+IS+V +R IV
Sbjct: 708 EEEEKEHMVKVHSEKLAIAFGLLSTEP-GTEIRIIKNLRVCLDCHNATKFISKVTQRLIV 766

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD +R+H F +G C+CGD W
Sbjct: 767 VRDASRFHHFRDGVCSCGDYW 787



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 195/424 (45%), Gaps = 11/424 (2%)

Query: 13  NTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           N +   R +H  ++ +   AD  + + L   Y K +    + ++F+ +PSP+ + W  L+
Sbjct: 128 NDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLL 187

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           +    S  +L  F+ M+    +   P+  TLAS  +  A  SH    G  +H   +K  L
Sbjct: 188 AGLPGSE-ALEAFVRMVDAGRVR--PDSTTLASSLRAAAEASH-MAMGRCVHGYGVKCGL 243

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
            +     + L+  YS+    D+A+ +FD +   D+V Y A+I G++ N  +  S+ +F +
Sbjct: 244 AEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKE 303

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           + +S        +   +   +        R +H   V + LD + +V T L   Y +   
Sbjct: 304 LTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLND 363

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  AR +FD  L      +WNAM++GYAQ G     + LF L++     P+  +  + L+
Sbjct: 364 MESARSIFDAMLEKTME-SWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLS 422

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + G A    KW+ R+  + KLE  +   T LI    + G + +A  I   M    + 
Sbjct: 423 ACAHLG-ALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMD-NKNV 480

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
             W A++S   +HG+   A K+ K ++D  I P   S ++ V    S  G  DE  +V +
Sbjct: 481 VSWNAMISGYGLHGQGAEALKLYKDMLDARILP-TSSTFLSVIYACSHGGLVDEGQKVFR 539

Query: 430 VMKD 433
           VM +
Sbjct: 540 VMTN 543



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 174/390 (44%), Gaps = 43/390 (11%)

Query: 50  SYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTC 109
           S+ LRLF   P P+     AL+ +           L  LR P L F P+  + +  F   
Sbjct: 71  SHLLRLFRAFPCPDRFLRNALLRS-----------LPSLR-PHLLF-PSPDSFSFAFAAT 117

Query: 110 ASLSHAFLFG------LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           +  S     G       +LH LS+        F  SAL   Y +    D+A+KVFD +  
Sbjct: 118 SLSSSCSSRGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPS 177

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
            D + +  ++ G   +    ++L  F  M  +  V      ++ +LRAAAE + M   R 
Sbjct: 178 PDTILWNTLLAGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRC 233

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +HG+ V  GL  +  V TGL+  Y K G +  A+ +FD  +   + +A+NA+++GY+  G
Sbjct: 234 VHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDR-MDNPDLVAYNALISGYSVNG 292

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGL 339
              + +ELF  L   G+ P+  + +AV+      G   LA    + +    V+ +L+   
Sbjct: 293 MVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLA----RCLHAFVVKARLDADA 348

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
              T L +   R   +E A  I  AM  E     W A++S  A +G  +MA  + + + +
Sbjct: 349 LVSTALTTLYCRLNDMESARSIFDAM-LEKTMESWNAMISGYAQNGLTEMAVALFQLMQE 407

Query: 400 INPYDDSAYVIVANVLSG--------VGRW 421
           +N   +   + +++ LS         +G+W
Sbjct: 408 LNVQPNP--ITISSTLSACAHLGALSLGKW 435


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 176/564 (31%), Positives = 301/564 (53%), Gaps = 23/564 (4%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +IV AR    S   R +  +N +IT Y+++  +  + +LF+  P  ++ +WTA++S +  
Sbjct: 229 KIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQ 288

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + +         R P  + +     LA   +                 + +   L D   
Sbjct: 289 NRMVEEARELFDRMPERNEVSWNAMLAGYVQG--------------ERVEMAKELFDVMP 334

Query: 137 C-----GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           C      + ++  Y++      AK +FD++ +RD V + AMI G++Q+    ++L +F  
Sbjct: 335 CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVL 394

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M            S AL   A++ A+E  + +HG  V  G +    VG  L+  Y K G 
Sbjct: 395 MEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGS 454

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + +A  +F E ++  + ++WN M+AGY++ G     L  F  ++  G  PD+ + +AVL+
Sbjct: 455 IEEANDLFKE-MAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLS 513

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  +  ++   M   Y + P  +HY C++  +GRAG LE+A  +   MPFEPDA
Sbjct: 514 ACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDA 573

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           A+W  LL  S +HG  ++A     ++  + P +   YV+++N+ +  GRW +V ++R  M
Sbjct: 574 AIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRM 633

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           +D+ V+K  G SWIE++ K H F  GD  H   ++I+  L +L    ++ GYV     +L
Sbjct: 634 RDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVL 693

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H+V + EK   + YHSE+LA+A+G++     G+ +R++KNLR+C DCH + KY+++V  R
Sbjct: 694 HDVEEEEKERMVRYHSERLAVAYGIMR-VSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGR 752

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
            I++RD NR+H F +GSC+CGD W
Sbjct: 753 LIILRDNNRFHHFKDGSCSCGDYW 776



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 38/290 (13%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +A++  Y R    + A+ +FDE+ ERD+V +  MI G+ +N  L  +  +F  M   DV 
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC 153

Query: 199 S-----TMY----CVSGALRA------------AAELAAMEQCRVIHGHAVVSGLDRN-- 235
           S     + Y    CV  A R              A L+A  Q   +    V+ G   N  
Sbjct: 154 SWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWA 213

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           ++    L+ G+ K   + +AR+ FD ++ V + ++WN ++ GYAQ G+     +LF    
Sbjct: 214 LVSWNCLLGGFVKKKKIVEARQFFD-SMKVRDVVSWNTIITGYAQNGEIDEARQLFDESP 272

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
           +     D +++ A+++      +  E+ +  +RM  R ++      +  +++   +  R+
Sbjct: 273 VH----DVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVS-----WNAMLAGYVQGERV 323

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           E A+ +   MP   + + W  +++  A  GK   A    K L D  P  D
Sbjct: 324 EMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEA----KNLFDKMPKRD 368



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 19/235 (8%)

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           Y R      A +VF  +     V Y AMI G+ +N     +  +F +M   D+ S    +
Sbjct: 69  YMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMI 128

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
            G +R      A E    +         +R+V     ++ GY + G V DARRVFD  + 
Sbjct: 129 KGYVRNRNLGKARELFERMP--------ERDVCSWNTILSGYAQNGCVDDARRVFDR-MP 179

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             N ++WNA+++ Y Q         LF   E         S+  +L          E+ +
Sbjct: 180 EKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALV----SWNCLLGGFVKKKKIVEARQ 235

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           + + MKVR      +  +  +I+   + G +++A ++    P   D   W A++S
Sbjct: 236 FFDSMKVR-----DVVSWNTIITGYAQNGEIDEARQLFDESPVH-DVFTWTAMVS 284


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 197/593 (33%), Positives = 306/593 (51%), Gaps = 40/593 (6%)

Query: 20  IVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +V AR L  +  + D   +  +IT Y +++ L+ +  +F  +      +W A+IS + + 
Sbjct: 208 MVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKPF 136
                      +   L    +  T  ++   CA++  +F  G  +H+  LK  L+ +  F
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG-SFQMGKQVHAYILKNELNPNHSF 326

Query: 137 C---GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA---------------------- 171
           C    +AL+  Y +    D A+K+F  +  R+++ + A                      
Sbjct: 327 CLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMP 386

Query: 172 ---------MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
                    MI G AQN    + L +F  MR        +  +GAL A + L A+E  R 
Sbjct: 387 VKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQ 446

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +H   V  G + ++ VG  +I  Y K G+V  A  VF    SV + ++WN+M+A   Q G
Sbjct: 447 LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSV-DLVSWNSMIAALGQHG 505

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                +ELF  +   G  PD  +FL VLTA  +AGL  +   +   M   Y + P  +HY
Sbjct: 506 HGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHY 565

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
             ++    RAG    A  +  +MP +P A VW ALL+   IHG  D+  +  ++L  + P
Sbjct: 566 ARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMP 625

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
            +D  YV+++N+ + VGRW+EVA+VRK+M+D+ VRKE   SWIEV+ KVHVF+  D +H 
Sbjct: 626 QNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHP 685

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
               +Y  L +L  E ++LGY+P    +LH++   +K  AL  HSEKLA+ FG++   P 
Sbjct: 686 EVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMK-LPP 744

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           G T+R+ KN+RIC DCH +FK++S+V  REI+VRD  R+H F NG C+C D W
Sbjct: 745 GATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 115/519 (22%), Positives = 203/519 (39%), Gaps = 138/519 (26%)

Query: 9   PQPQNTSTDPRIVHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSW 67
           PQ   + +  R VHA  + S    R  + N L+  Y KS+ L Y+ +LF  IP+P+ ++ 
Sbjct: 23  PQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIAR 82

Query: 68  TALISAH-------------SNSPL-----------------------SLNIFLSMLRHP 91
           T LI+A+             + +PL                       +L +F +M R  
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRD- 141

Query: 92  TLSFLPNQRTLASLF----------KTCASLSHAF----LFGLSLHSLSLKLSLHDK--- 134
              F P+  T  S+           + C  +  A     +  +S   L+  LS++ K   
Sbjct: 142 --DFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRAS 199

Query: 135 --PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                 SA+V          +A+K+FDE+ +RD + +  MI G+ +N  L  +  VF  M
Sbjct: 200 ELGISCSAMV----------SARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAM 249

Query: 193 R-------SSDVGSTMYC------------------------VSGALRAAAELAAMEQCR 221
                   ++ +   ++C                         +  + A A + + +  +
Sbjct: 250 VENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGK 309

Query: 222 VIHGHAVVSGLDRN----VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
            +H + + + L+ N    + V   LI  Y K   V +AR++F   + V N I WNA+++G
Sbjct: 310 QVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF-YAMPVRNIITWNAILSG 368

Query: 278 Y-------------------------------AQQGDQSTVLELFHLLEMRGFAPDEYSF 306
           Y                               AQ G     L+LF  + + GF P +++F
Sbjct: 369 YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAF 428

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
              LTA C+   A E+ + +    V    E  L     +IS   + G +E AE + + MP
Sbjct: 429 AGALTA-CSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP 487

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
              D   W ++++    HG    A ++  +++    + D
Sbjct: 488 -SVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPD 525


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/579 (32%), Positives = 313/579 (54%), Gaps = 41/579 (7%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSML 88
           D   +  LI+  +K  +L  +  L +  P  +++SWT+LI+A+S +  +   +  F +ML
Sbjct: 172 DAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTML 231

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL----------SLKLSLHD----- 133
            H      P++ T+ ++   CA L    L G SLH L          +L ++L D     
Sbjct: 232 SH---GIAPDEVTVIAVLSACAKLKDLEL-GRSLHLLVEEKGMPTSENLVVALIDMYAKC 287

Query: 134 -----------------KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
                            +P   +A++  Y +    D A+ +FDE+  RD++ + +M+ G+
Sbjct: 288 GDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGY 347

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
             + +L ++L +F  MR  D+    + V   L A A L A++Q R +H       ++ ++
Sbjct: 348 IHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADI 407

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            +GT L+D Y K G V +A  VF + +   +   W AM+AG A  G     LE F+ +  
Sbjct: 408 YLGTALLDMYMKCGRVDEATIVF-QRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRC 466

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            GF P+  S++AVLTA  ++ L  E   + + M++ Y + P +EHY C+I  +GR+G L+
Sbjct: 467 DGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 526

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A  +   MP +P+A +W ++LS   +H   D+A    + L+ + P +D  YV + N+  
Sbjct: 527 EAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYI 586

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
              +W+  +++R +M++R+V+K  G S I V G+VH F+  D+ H R  +I   L E+  
Sbjct: 587 DSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISH 646

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
             + LGY P+  ++  +V + EK +AL  HSEKLA+AFGL++ AP    + I KNLR+C 
Sbjct: 647 RLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAP-NLPVHIRKNLRVCE 705

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH + K ISR+  REI+VRD +R+H F  G+C+C D W
Sbjct: 706 DCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 187/468 (39%), Gaps = 71/468 (15%)

Query: 9   PQPQNTSTDPRIV------HARALKSSQ------ADRSIYNNLITNYSKSNL-LSYSLRL 55
           P P  T   PR V      HAR   S        + R + N+L+       L L Y+L L
Sbjct: 3   PAPWPT---PRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHL 59

Query: 56  FNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL--S 113
           F+ +P    +  TAL +           FL   R       P+  T   LFK  +S    
Sbjct: 60  FDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRP 119

Query: 114 HAFLFGLSLHSLSLKLSLHDK-PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
           H+ L    LH+  L+  L    PF  ++L+H Y R     +A++ FDEI  +D V +  +
Sbjct: 120 HSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTML 179

Query: 173 IVGFAQNSRLVDS-------------------------------LSVFADMRSSDVGSTM 201
           I G A+   L D+                               +  F  M S  +    
Sbjct: 180 ISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDE 239

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
             V   L A A+L  +E  R +H      G+  +  +   LID Y K G    A++VFD 
Sbjct: 240 VTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDA 299

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
                   +WNA++ GY + G       LF  +E+R    D  +F +++T   ++G   E
Sbjct: 300 LGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVR----DIITFNSMMTGYIHSGQLRE 355

Query: 322 SEKWIERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMAMP---FEPDAAVWRA 376
           +      M+ R+ L   ++++T   L++A    G L+    +   +     E D  +  A
Sbjct: 356 ALLLFMSMR-RHDLR--VDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTA 412

Query: 377 LLSFSAIHGKADMAS----KMGKRLIDINPYDDSAYVIVANVLSGVGR 420
           LL      G+ D A+    +MGKR  D++ +     +I     +G+G+
Sbjct: 413 LLDMYMKCGRVDEATIVFQRMGKR--DVHTW---TAMIAGLAFNGMGK 455


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 184/570 (32%), Positives = 318/570 (55%), Gaps = 15/570 (2%)

Query: 16  TDPRIVHARALKS--SQADRSIYNNLI---TNYSKSNLLSYSLRLFNHIPSP-NIVSWTA 69
           T  R +HA ++++  S +D  +  +LI    +      +SY+ ++F+ I  P N+  W  
Sbjct: 31  TKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNT 90

Query: 70  LISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLS 126
           LI  ++   NS  +++++  M     +   P+  T   L K    ++   L G ++HS+ 
Sbjct: 91  LIRGYAEIGNSVSAVSLYREMRASGFVE--PDTHTYPFLLKAVGKMADVRL-GETIHSVV 147

Query: 127 LKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186
           ++       +  ++L+H Y+      +A KVFD++ E+D+V + ++I GFA+N +  ++L
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
           +++ +M    +    + +   L A A++ A+   +  H + +  GL RN+     L+D Y
Sbjct: 208 ALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYS 305
            + G V +A+ +FDE +   NS++W +++ G A  G     +ELF  +E + G  P E +
Sbjct: 268 ARCGRVEEAKTLFDEMVDK-NSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEIT 326

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           F+ +L A  + G+  E  ++  RM   YK+EP +EH+ C++  + RAG+++ A    + M
Sbjct: 327 FVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKM 386

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           P +P+  +WR LL    +HG +D+A     +++ + P     YV+++N+ +   RW +V 
Sbjct: 387 PMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQ 446

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           ++RK M    VRK  G S +EV  +VH FL GD+ H + + IY KL E+ +     GYVP
Sbjct: 447 KIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVP 506

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
               +  +V + EK  AL YHSEK+A+AF L+S  P    +R+VKNL++C DCH + K +
Sbjct: 507 QISNVYVDVEEEEKENALVYHSEKIAIAFMLIS-TPERWPIRVVKNLKVCADCHLAIKLV 565

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S+V  REIVVRD +R+H F NGSC+C D W
Sbjct: 566 SKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 309/562 (54%), Gaps = 29/562 (5%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP------LSLNIFLSMLRH 90
           ++LI   SK NL  Y+ ++FN+I +P I  +  LIS+  N        L+ +++  +L +
Sbjct: 185 SHLIKISSKFNL-PYAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTN 243

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK-LSLHDKPFCGSALVHFYSRFR 149
             L   PN  T  SLFK C S    F +G  LH+  LK L      F  ++L++FY+++ 
Sbjct: 244 KNLQ--PNSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYG 301

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL-------------VDSLSVFADMRSSD 196
               ++ +FD I E D+  +  ++  +A++S               ++SL +F DM+   
Sbjct: 302 KMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIG 361

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      +   + A + L A+ Q   +H   + + +  N  VGT  +D Y K G ++ A 
Sbjct: 362 IRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLAC 421

Query: 257 RVFD---ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +VFD   EN    +S  + AM+ G+A  G  +  LEL+  ++ +G  PD  +F+  + A 
Sbjct: 422 QVFDKMPENDR--DSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFAC 479

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            + GL  E  +  + MK  + +EP LEHY CLI  +GRAGRL++AE     MP +P+A +
Sbjct: 480 SHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVL 539

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           WR+LL  + IHG   +      +LI++ P     YV+++N+ + VGR ++V  VRK+MK 
Sbjct: 540 WRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKH 599

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
             V K  G S +E+KG +H FL GDR H  +++IY K+AE+    E  G+     E L +
Sbjct: 600 HGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFD 659

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           + + +K   L YHSE+LA+AF L++ +P    +RI+KNLR+C DCH   K IS    REI
Sbjct: 660 LEEEDKEGVLSYHSERLAIAFALIA-SPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREI 718

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           +VRD NR+H F +GSC+C D W
Sbjct: 719 IVRDRNRFHHFKDGSCSCLDYW 740



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 124/285 (43%), Gaps = 25/285 (8%)

Query: 20  IVHARALKSSQA--DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN- 76
           ++H   LK  Q   D  +  +L+  Y+K   +  S  +F+ I  P++ +W  +++A++  
Sbjct: 272 LLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARS 331

Query: 77  ---------------SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
                          S  SL +F  M     +   PN+ T+ +L   C++L  A   G  
Sbjct: 332 SSYHSYSNSFDDADFSLESLYLFRDM---QVIGIRPNEVTIVALISACSNLG-AVSQGFW 387

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGFAQN 179
           +H   L+  +    F G+A V  YS+    + A +VFD++ E  RD  CY AMI GFA +
Sbjct: 388 VHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVH 447

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVVSGLDRNVIV 238
                +L ++  M+   +          + A + +  +E+   +      V G++  +  
Sbjct: 448 GYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEH 507

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
              LID  G+AG + +A     +     N++ W +++      G+
Sbjct: 508 YGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGN 552


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/552 (34%), Positives = 300/552 (54%), Gaps = 19/552 (3%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D +   +L++ YS S  L+ + ++F  IP  ++V+WTAL S ++ +     ++++F  M+
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMV 204

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               +   P+   +  +   C  +      G  +     ++ +    F  + LV+ Y++ 
Sbjct: 205 E---MGVRPDSYFIVQVLSACVHVGD-LDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKC 260

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              + A+ VFD + E+D+V +  MI G+A NS   + +  F  M   ++    + + G L
Sbjct: 261 GKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFL 320

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDR-----NVIVGTGLIDGYGKAGIVSDARRVFDENL 263
            + A L A++      G   +S +DR     N+ +   LID Y K G ++    VF E +
Sbjct: 321 SSCASLGALDL-----GEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKE-M 374

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              + +  NA ++G A+ G       +F   E  G +PD  +FL +L    +AGL  +  
Sbjct: 375 KEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGL 434

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           ++   +   Y L+  +EHY C++   GRAG L+DA R+   MP  P+A VW ALLS   +
Sbjct: 435 RFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRL 494

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
                +A  + K LI + P++   YV ++N+ S  GRWDE AEVR +M  + ++K  G S
Sbjct: 495 VKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYS 554

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
           WIE++G VH FLA D+ H  ++ IY KL +L  E   +G+VP  + +  +V D EK   L
Sbjct: 555 WIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVL 614

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
            +HSEKLA+AFGL+S    G+ +R+VKNLR+C DCHE  K IS++  REIVVRD NR+H 
Sbjct: 615 GHHSEKLAVAFGLIS-TDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHC 673

Query: 564 FLNGSCTCGDLW 575
           F NGSC+C D W
Sbjct: 674 FTNGSCSCNDYW 685



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 154/343 (44%), Gaps = 10/343 (2%)

Query: 51  YSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFK 107
           YS  LF+H   PNI  +  LI+   N+ L   +L++FLS+ +H       +  T   + K
Sbjct: 63  YSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKH---GLNLHGFTFPLVLK 119

Query: 108 TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167
            C   S+  L G+ LHSL +K   +      ++L+  YS     ++A KVF+EI ER VV
Sbjct: 120 ACTRASNRKL-GIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVV 178

Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
            + A+  G+    +  +++ +F  M    V    Y +   L A   +  ++    I  H 
Sbjct: 179 TWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHM 238

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
               + +N  V T L++ Y K G +  AR VFD ++   + + W+ M+ GYA        
Sbjct: 239 EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFD-SMGEKDIVTWSTMIQGYASNSFPKEG 297

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           +E F  +      PD++S +  L++  + G A +  +W   +  R++    L     LI 
Sbjct: 298 IEFFLQMLQENLKPDQFSIVGFLSSCASLG-ALDLGEWGISLIDRHEFLTNLFMANALID 356

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
              + G +     +   M  E D  +  A +S  A +G   ++
Sbjct: 357 MYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLS 398



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 122/283 (43%), Gaps = 3/283 (1%)

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           +P+  +     KT  S++  F     +H   +   LH   F  + L+     FR    + 
Sbjct: 6   VPSSTSKVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSF 65

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            +F   +  ++  Y  +I GF  N    ++L +F  +R   +    +     L+A    +
Sbjct: 66  LLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRAS 125

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
             +    +H   V  G + +V   T L+  Y  +G ++DA +VF+E +   + + W A+ 
Sbjct: 126 NRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEE-IPERSVVTWTALF 184

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           +GY   G     ++LF  +   G  PD Y  + VL+A  + G   +S +WI +     ++
Sbjct: 185 SGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDL-DSGEWIVKHMEEMEM 243

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           +      T L++   + G++E A  +  +M  E D   W  ++
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMG-EKDIVTWSTMI 285



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 122/260 (46%), Gaps = 24/260 (9%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           Q +  +   L+  Y+K   +  +  +F+ +   +IV+W+ +I  ++++      +  FL 
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQ 303

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFL--FGLSL---HSLSLKLSLHDKPFCGSAL 141
           ML+    +  P+Q ++     +CASL    L  +G+SL   H     L      F  +AL
Sbjct: 304 MLQE---NLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNL------FMANAL 354

Query: 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR----SSDV 197
           +  Y++  +     +VF E++E+D+V   A I G A+N  +  S +VF        S D 
Sbjct: 355 IDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDG 414

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            + +  + G + A       +  R  +  + V  L R V     ++D +G+AG++ DA R
Sbjct: 415 STFLGLLCGCVHAG---LIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYR 471

Query: 258 VFDENLSVLNSIAWNAMMAG 277
           +  +     N+I W A+++G
Sbjct: 472 LICDMPMRPNAIVWGALLSG 491


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/579 (32%), Positives = 293/579 (50%), Gaps = 42/579 (7%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPS----PNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           ++ LI  YS       +  L   + S    PN+++W  L+S  + S  +L+   +++R  
Sbjct: 86  WSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMH 145

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
           +  F P+   ++        +    + G  +H   +K          +AL+  Y +    
Sbjct: 146 SEGFFPDATGVSCALSAVGDVKEVSV-GKQVHGYVVKAGCRLDACVVTALIDMYGKCGRA 204

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFA---------------------------------- 177
           D   +VF E    DV    A++ G +                                  
Sbjct: 205 DEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACC 264

Query: 178 -QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
            QN R ++++ +F  M+S  V      +   L A A +AA+   R  H  ++  G   +V
Sbjct: 265 VQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDV 324

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            VG+ L+D Y K G    AR +FD  +   N ++WNAM+ GYA  GD +  ++LF  ++ 
Sbjct: 325 YVGSALVDMYAKCGKARHARTIFDA-MPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQK 383

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
               PD  +F  VL A   AGL  E  ++   M+  + + P +EHY C+++ +GR+G+L+
Sbjct: 384 CKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLD 443

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A  +   MPFEPD+ +W +LL    ++G   +A    ++L  + P +   YV+++N+ +
Sbjct: 444 EAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYA 503

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
               WD V  VR  MK+  ++KE G SWIE+K KVH+ LAGD  H     I  KL +L  
Sbjct: 504 SKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTI 563

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
           E  RLG+ P  D +LH+V ++EK   L  HSEKLA+A GL+S  P G  LR++KNLRIC 
Sbjct: 564 EMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRP-GTPLRVIKNLRICG 622

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCHE+ K+IS   +REI VRD NR+H F +G C+CGD W
Sbjct: 623 DCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 155/396 (39%), Gaps = 95/396 (23%)

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           +HSNS          LRH  +SF P+   L S  K+C     A     +LH+ ++   L 
Sbjct: 2   SHSNS------LYHFLRH--VSFPPDPHLLPSALKSCP----AQPLARALHAAAVVSGLA 49

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA--------------- 177
           + PF  S+L+H Y R  +   A+ VFD + E++VV + A+I G++               
Sbjct: 50  EDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQM 109

Query: 178 --------------------QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
                               ++ R +D+++    M S         VS AL A  ++  +
Sbjct: 110 RSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEV 169

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE---------------- 261
              + +HG+ V +G   +  V T LID YGK G   +  RVF E                
Sbjct: 170 SVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGL 229

Query: 262 --NLSV----------------LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
             N  V                LN ++W +++A   Q G     ++LF  ++  G  P+ 
Sbjct: 230 SRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNS 289

Query: 304 YSFLAVLTALCN--AGLAGESEKWIERMKVRYKLEPGLEH----YTCLISAMGRAGRLED 357
            +   VL A  N  A + G S          + L  G  H     + L+    + G+   
Sbjct: 290 VTIPCVLPAFANVAALMHGRSAHC-------FSLRKGFLHDVYVGSALVDMYAKCGKARH 342

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           A  I  AMP   +   W A++   A+HG A  A ++
Sbjct: 343 ARTIFDAMPSR-NVVSWNAMIGGYAMHGDAANAVQL 377



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 125/270 (46%), Gaps = 24/270 (8%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP----NIVSWTALISAH 74
           R+ H    +SS  D +  N L+   S++  +S +L LF          N+VSWT++++  
Sbjct: 209 RVFH----ESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACC 264

Query: 75  SNSPLSL---NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
             +   L   ++F +M    ++   PN  T+  +    A+++ A + G S H  SL+   
Sbjct: 265 VQNGRDLEAVDLFRTM---QSIGVEPNSVTIPCVLPAFANVA-ALMHGRSAHCFSLRKGF 320

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               + GSALV  Y++     +A+ +FD +  R+VV + AMI G+A +    +++ +F  
Sbjct: 321 LHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCS 380

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCR-----VIHGHAVVSGLDRNVIVGTGLIDGY 246
           M+       +   +  L A ++    E+ R     +  GH +   ++    + T L    
Sbjct: 381 MQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLL---- 436

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           G++G + +A  + +E     +S  W +++ 
Sbjct: 437 GRSGKLDEAYDLINEMPFEPDSCIWGSLLG 466


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 157/372 (42%), Positives = 239/372 (64%), Gaps = 2/372 (0%)

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           ++G LRA A +AA+EQ + +H   +  G + +V V  GL+D YGK G + DA+ VF + L
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              +  +WNAM++G AQ G     + LF  +   G  P++ +F+ VL+   +AGL  E  
Sbjct: 61  EP-DVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGR 119

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
            + + M   + + P  EHY+C++   GRAG L++A      MP EP+A+VW +LL    +
Sbjct: 120 NYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRV 179

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           HG  ++A +  ++LI++ P +   YV+++N+ +  GRWD+  +VRK+MKDR V+KE G S
Sbjct: 180 HGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCS 239

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
           WIEV+ KVH F+ GD  H + E+IY  L  L  + +  GY+P  + +LH+V + +K   L
Sbjct: 240 WIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWIL 299

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
            +HSEKLA+AFG++S  P G T+R+VKNLR+C DCH + K+ISR+V REIV+RD +R+H 
Sbjct: 300 GHHSEKLAIAFGIIS-TPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHH 358

Query: 564 FLNGSCTCGDLW 575
           F +G C+CGD W
Sbjct: 359 FKDGQCSCGDYW 370



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VHA  +K   + D S+ N L+  Y K   +  +  +F+ +  P++ SW A+IS    H  
Sbjct: 20  VHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGC 79

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
              ++ +F  ML+       PNQ T   +   C   SHA L
Sbjct: 80  GKEAVLLFEQMLQ---TGVKPNQITFVVVLSGC---SHAGL 114


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 191/560 (34%), Positives = 303/560 (54%), Gaps = 8/560 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA+ +++  + D  +   L+ + SK + + Y+ R+F +  +PN+  +TALI    +S  
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 110

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
             +      R    S LP+   +AS+ K C S   A   G  +HS +LKL L        
Sbjct: 111 YFDAIQLYSRMLHDSILPDNYLMASILKACGS-QLALREGREVHSRALKLGLSSNRLVRL 169

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRE----RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            ++  Y +     +A++VF+E+ E    +D VC+ AMI GF +N  +  +L  F  M+  
Sbjct: 170 RIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGE 229

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           +V    + +   L A ++L A+E  R +H +     ++ N+ VG  LI+ Y + G + +A
Sbjct: 230 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 289

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           + VFDE +   + I +N M++G +  G     +ELF ++  R   P   +F+ VL A  +
Sbjct: 290 QTVFDE-MKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSH 348

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            GL     K    M   Y +EP +EHY C++  +GR GRLE+A  +   M   PD  +  
Sbjct: 349 GGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLG 408

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
            LLS   +H   ++  ++ K L D    D   YV++++V +  G+W E A+VR  MK+  
Sbjct: 409 TLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAG 468

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           ++KE G S IEV  ++H FL GD  H R E IY KL EL       GY P  + +L ++ 
Sbjct: 469 MQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIE 528

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           D EK  AL  HSE+LA+ +GL+S  P    +R++KNLR+C DCH + K I+++  R++VV
Sbjct: 529 DGEKEWALAIHSERLAICYGLISTEP-CTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVV 587

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H F NG+C+CGD W
Sbjct: 588 RDRNRFHYFENGACSCGDYW 607



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 159/333 (47%), Gaps = 18/333 (5%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           +Q+ + SL +    ++      L +H+  ++      PF    L+   S+  + D A ++
Sbjct: 31  DQKQIISLLQRSKHINQV----LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI 86

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           F      +V  Y A+I GF  +    D++ +++ M    +    Y ++  L+A     A+
Sbjct: 87  FQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLAL 146

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD---ENLSVLNSIAWNAM 274
            + R +H  A+  GL  N +V   +++ YGK G + DARRVF+   E++   +++ W AM
Sbjct: 147 REGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAM 206

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + G+ +  + +  LE F  ++     P+E++ + VL+A    G A E  +W+     +++
Sbjct: 207 IDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG-ALEIGRWVHSYMRKFE 265

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM- 393
           +E  L     LI+   R G +++A+ +   M  + D   +  ++S  +++GK+  A ++ 
Sbjct: 266 IELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQAIELF 324

Query: 394 ----GKRLIDINPYDDSAYVIVANVLSGVGRWD 422
               G+RL   N      +V V N  S  G  D
Sbjct: 325 RVMIGRRLRPTN----VTFVGVLNACSHGGLVD 353


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 193/609 (31%), Positives = 317/609 (52%), Gaps = 60/609 (9%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAHSN- 76
           +H+R +K+      I  N I ++  S     + Y+ +LF+ IP P++ SW  +   +S  
Sbjct: 33  IHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRI 92

Query: 77  --SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
               L ++++L ML     +  P+  T   LFK   + S A   G  LH   +K  L   
Sbjct: 93  ACPKLGVSLYLEMLER---NVKPDCYTYPFLFKG-FTRSVALQLGRELHCHVVKYGLDSN 148

Query: 135 PFCGSALVHFYS-------------------------------RFRSP------------ 151
            F  +AL++ YS                               R +              
Sbjct: 149 VFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFV 208

Query: 152 -----DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
                D A+K F ++ ERD V + AMI G+ + +   ++L +F +M++S +    + +  
Sbjct: 209 NTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVS 268

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A A+L A+E    I  +   + +  +  VG  LID Y K G V  A  +F+  L   
Sbjct: 269 VLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFN-TLPQR 327

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           +   W AM+ G A  G     L +F  +      PDE +++ VL+A  + G+  E +K+ 
Sbjct: 328 DKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFF 387

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             M  R+ +EP + HY C++  +G+AG L++A  I   MP +P++ VW ALL    IH  
Sbjct: 388 ASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKD 447

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
           A+MA +  ++++++ P + + YV+  N+ +   +WD++ E+R+VM DR ++K  G S IE
Sbjct: 448 AEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIE 507

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           + G VH F+AGD+ H +T++IY KL ++  + +  GY P   E+  ++ + +K  A++ H
Sbjct: 508 MNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRH 567

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+AFGL++  P G T+RIVKNLR+C DCH   K +S+V +RE++VRD  R+H F +
Sbjct: 568 SEKLAIAFGLINSGP-GVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRH 626

Query: 567 GSCTCGDLW 575
           GSC+C D W
Sbjct: 627 GSCSCKDYW 635



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 148/371 (39%), Gaps = 58/371 (15%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS--RFRSPDNAKKVFDEI 161
           SLF+TC S+ H       +HS ++K  +   P   + ++ F     F     A+++FD I
Sbjct: 19  SLFETCKSMYHL----KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTI 74

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
            E  V  +  M  G+++ +     +S++ +M   +V    Y      +      A++  R
Sbjct: 75  PEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGR 134

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD--------------------- 260
            +H H V  GLD NV     LI+ Y   G++  AR +FD                     
Sbjct: 135 ELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIK 194

Query: 261 --------------------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
                                       +   + ++W AM+ GY +       L LF  +
Sbjct: 195 KDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREM 254

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
           +     PDE++ ++VLTA    G A E  +WI     + K++        LI    + G 
Sbjct: 255 QTSKIKPDEFTMVSVLTACAQLG-ALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGN 313

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVA 412
           +E A  I   +P + D   W A++   AI+G  + A  M  +++   + P D+  YV V 
Sbjct: 314 VEMALSIFNTLP-QRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTP-DEVTYVGVL 371

Query: 413 NVLSGVGRWDE 423
           +  +  G  DE
Sbjct: 372 SACTHTGMVDE 382


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 307/547 (56%), Gaps = 10/547 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP---LSLNIFLSML 88
           D  + N ++  + K  ++  + RLF+ +P  NI+SW  +I    ++     +  +FL M 
Sbjct: 165 DEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMW 224

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           +  + +     R   ++ +  A L   F  G  LHS SLK  +    F   AL+  YS+ 
Sbjct: 225 QDFSDA---GSRMFVTMIRASAGLGLIFA-GRQLHSCSLKTGVGGDVFVACALIDMYSKC 280

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
            S ++A+ VFD++ E+  V + ++I G+A +    ++LS++ +MR S V    +  S  +
Sbjct: 281 GSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIII 340

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           R  A LA++E  +  H   V  G   +++  T L+D Y K G + DA+ VFD  +   N 
Sbjct: 341 RICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFD-MMPHKNV 399

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           I+WNA++AGY   G     +E+F  +   G  P+  +FLAVL+A   +GL+    +  E 
Sbjct: 400 ISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFES 459

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M   +K++P   HY C+I  +GR G L++A  +    PF+P   +W ALL+   +H   +
Sbjct: 460 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFE 519

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +     ++L  + P   S YV++ N+ +  GR +E A V + +K R +R     SWIE+K
Sbjct: 520 LGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIK 579

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
            + + F++GD+ H ++++IY KL ELM E  + GYVP    +L +V ++E+R  L YHSE
Sbjct: 580 KQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVDEQEER-VLLYHSE 638

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           KLA+AFGL++ +     L+IV++ RIC DCH + K I+ V  REIVVRD +R+H F +GS
Sbjct: 639 KLAIAFGLINTSD-WTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGS 697

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 698 CSCGDYW 704



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 5/198 (2%)

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           D+ S  Y     + A   L ++   + +  + + SGLD +  +   ++  + K G++ DA
Sbjct: 128 DMDSETY--DALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDA 185

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           RR+FDE +   N ++WN ++ G    GD      LF ++           F+ ++ A   
Sbjct: 186 RRLFDE-MPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAG 244

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            GL     + +    ++  +   +     LI    + G +EDA+ +   MP E     W 
Sbjct: 245 LGLIFAGRQ-LHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP-EKTTVGWN 302

Query: 376 ALLSFSAIHGKADMASKM 393
           ++++  A+HG ++ A  M
Sbjct: 303 SIIAGYALHGYSEEALSM 320


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/574 (32%), Positives = 317/574 (55%), Gaps = 38/574 (6%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           + N LI  YS S  +S +  +F+     ++V+W  +IS ++ S     S+ +F  M R  
Sbjct: 156 VQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMER-- 213

Query: 92  TLSFLPNQRTLASLFKTCASLS--------HAFLFGLSLHSLS-LKLSLHDK-PFCG--- 138
            +  LP+  TL S+   C+ L         H ++  L +  +  L+ +L D    CG   
Sbjct: 214 -MRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMD 272

Query: 139 -----------------SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
                            +A+V  ++       A+  FD++ ERD V + AMI G+ Q +R
Sbjct: 273 TALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNR 332

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
             + LS+F +M+++++    + +   L A A L A+E    I  +   + +  +  VG  
Sbjct: 333 FKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNA 392

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           LID Y   G V  A R+F+  +   + I+W A++ G A  G     L++F  +      P
Sbjct: 393 LIDMYFNCGNVEKAIRIFNA-MPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITP 451

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           DE + + VL A  ++G+  + +K+  RM  ++ +EP + HY C++  +GRAG L++A  +
Sbjct: 452 DEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEV 511

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
              MP +P++ VW +LL    +H   +MA    ++++++ P + + YV++ N+ +   RW
Sbjct: 512 IKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRW 571

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
           +++ EVRK+M DR ++K  G S IE+ G VH F+AGD++H ++++IY+KL E+  + +  
Sbjct: 572 EKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFA 631

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           GY P   E+  ++G+ EK  A++ HSEKLA+AFGL+S  P G T+RIVKNLR+C DCH  
Sbjct: 632 GYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGP-GVTIRIVKNLRMCVDCHYV 690

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            K +S+V  RE++VRD  R+H F +GSC+C D W
Sbjct: 691 AKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 172/398 (43%), Gaps = 45/398 (11%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHS-----NSPLSLNIFLSMLRHPTLSFLPNQRTLA 103
           + Y+  +F+ +P PN   W  +I  +S     NS +S+  +  ML       +P++ T  
Sbjct: 69  MEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSM--YCEMLER---GVMPDEYTYP 123

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
            L K   +   A   G  LH   +KL      F  +AL+H YS       A+ VFD   +
Sbjct: 124 FLLKR-FTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSK 182

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA-------- 215
            DVV +  MI G+ ++ +  +S+ +F +M    V  +   +   L A ++L         
Sbjct: 183 GDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRV 242

Query: 216 -------AMEQCRVIHG-----HAVVSGLD-----------RNVIVGTGLIDGYGKAGIV 252
                   +E  RV+       +A    +D           R+VI  T ++ G+   G V
Sbjct: 243 HRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQV 302

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR  FD+ +   + ++W AM+ GY Q      VL LF  ++     PDE++ +++LTA
Sbjct: 303 GLARNYFDK-MPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTA 361

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G A E  +WI+    + +++        LI      G +E A RI  AMP   D  
Sbjct: 362 CAHLG-ALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR-DKI 419

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
            W A++   AI+G  + A  M  +++  +   D    I
Sbjct: 420 SWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCI 457



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK--AGIVSDARRVFDENLSVLNSIAWNA 273
           +M Q + IH   + +GL  N IV   +I    K   G +  AR VFD  +   N   WN 
Sbjct: 31  SMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFD-TMPGPNHFVWNN 89

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
           M+ GY++ G  ++ + ++  +  RG  PDEY++  +L
Sbjct: 90  MIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 184/554 (33%), Positives = 303/554 (54%), Gaps = 24/554 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           D + +N ++  Y +   +  +L+LF  +P  N++SWT +I     +  S  +LN+F +ML
Sbjct: 158 DIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNML 217

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R    S     RT   +   CA+ + AF  G  +H   +K     + +  ++L+  Y+  
Sbjct: 218 RCCIKS---TSRTFTCVITACAN-APAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANC 273

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           +  ++++KVF E+    V  + A++ G++ N +  D+L+VF++M  + +       +  L
Sbjct: 274 KRTEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGL 333

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            + + L  ++  + IHG AV  GL     VG  L+  Y  +G V+DA  VF E     + 
Sbjct: 334 NSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKK-SI 392

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WN+++ G AQ G       +F  +      PDE +F  +L+A  + G   +  K    
Sbjct: 393 VSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRK---- 448

Query: 329 MKVRYKLEPGL-------EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
             + Y +  GL       +HYTC++  +GR G L++AE++  +M  +P+  VW ALLS  
Sbjct: 449 --LFYYISSGLNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSAC 506

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
            +H   D   K    + +++    +AYV+++N+ +  GRW  V+++R  MK + + K+ G
Sbjct: 507 RMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPG 566

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
            SW+ ++GK H F +GDR H     I+ KL  L E+ + LGYVP +   LH+V D +K E
Sbjct: 567 SSWVVIRGKKHEFFSGDRPH--CLRIFEKLEFLREKLKELGYVPDYRSALHDVEDEQKEE 624

Query: 502 ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
            LWYHSE+LA+AFGL++    G T+ ++KNLR+C DCH   K ISRVV  +IV+RD  R+
Sbjct: 625 MLWYHSERLAIAFGLINTV-EGSTVTVMKNLRVCEDCHTVIKLISRVVGCKIVLRDPTRF 683

Query: 562 HRFLNGSCTCGDLW 575
           H F NG C+CGD W
Sbjct: 684 HHFKNGMCSCGDYW 697



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 169/376 (44%), Gaps = 20/376 (5%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRH 90
           S+Y  +I+ Y++SN L  +L LF+ +P  ++VSW ++IS      +   ++ +F  M   
Sbjct: 67  SLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEMPER 126

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG-SALVHFYSRFR 149
             +S+              A ++  F FG+   +  L   +  K     +A+VH Y +F 
Sbjct: 127 SVVSWT-------------AMVNGCFRFGMVDQAERLFCQMPVKDIAAWNAMVHGYLQFG 173

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
             D+A K+F ++  ++V+ +  MI G  QN R  ++L++F +M    + ST    +  + 
Sbjct: 174 KVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVIT 233

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A A   A      +HG  + SG      V   LI  Y       D+R+VF E +    ++
Sbjct: 234 ACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAV 293

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            W A+++GY+        L +F  +      P++ +F + L + C+A    +  K I  +
Sbjct: 294 -WTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNS-CSALGTLDWGKEIHGV 351

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
            V+  L         L+     +G + DA  + + + F+     W +++   A HG+   
Sbjct: 352 AVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEI-FKKSIVSWNSIIVGCAQHGRGKW 410

Query: 390 ASKMGKRLIDINPYDD 405
           A  +  ++I +N   D
Sbjct: 411 AFVIFGQMIRLNKEPD 426



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 156/357 (43%), Gaps = 58/357 (16%)

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
           S+SH  + G S  S S+ +   ++      L+  +   R  D A++VFD++    V  Y 
Sbjct: 16  SMSHV-IHGKSFRSYSVTVEFQNR----EVLICNHLLNRRLDEAREVFDQVPSPHVSLYT 70

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
            MI G+ +++RLVD+L++F +M   DV S    +SG +       A++    +       
Sbjct: 71  KMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEMP------ 124

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
             +R+V+  T +++G  + G+V  A R+F + + V +  AWNAM+ GY Q G     L+L
Sbjct: 125 --ERSVVSWTAMVNGCFRFGMVDQAERLFCQ-MPVKDIAAWNAMVHGYLQFGKVDDALKL 181

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           F  +  +    +  S+  ++  L     +GE+    + M +R  ++     +TC+I+A  
Sbjct: 182 FKQMPRK----NVISWTTMICGLDQNERSGEALNLFKNM-LRCCIKSTSRTFTCVITACA 236

Query: 351 RA-----------------------------------GRLEDAERIAMAMPFEPDAAVWR 375
            A                                    R ED+ ++   M  E   AVW 
Sbjct: 237 NAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEK-VAVWT 295

Query: 376 ALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           ALLS  +++ K + A  +   +I   I P + S +    N  S +G  D   E+  V
Sbjct: 296 ALLSGYSLNRKHEDALNVFSEMIRNSILP-NQSTFASGLNSCSALGTLDWGKEIHGV 351


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 203/559 (36%), Positives = 313/559 (55%), Gaps = 29/559 (5%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISA---HSNSPLSLNIFLSMLR 89
           S+ N LIT+YSK+  L  + R+F+ +    + VSW +++ A   H     +L ++L M  
Sbjct: 174 SVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEM-- 231

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                 + +  TLAS+     ++    L GL  H+  +K   H     GS L+  YS+  
Sbjct: 232 -TVRGLIVDIFTLASVLTAFTNV-QDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCG 289

Query: 150 SPD-NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADM-----RSSDVGSTMY 202
               + +KVFDEI   D+V +  MI G++    L D +L  F  +     R  D   ++ 
Sbjct: 290 GCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDC--SLV 347

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIVSDARRVFDE 261
           CV   + A + +++  Q R +HG A+   +  N I V   LI  Y K G + DA+ +FD 
Sbjct: 348 CV---ISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFD- 403

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCNAGLAG 320
            +   N++++N+M+AGYAQ G     L LF  +LEM GF P   +F++VL A  + G   
Sbjct: 404 TMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEM-GFTPTNITFISVLAACAHTGRVE 462

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           + + +   MK ++ +EP   H++C+I  +GRAG+L +AER+   +PF+P    W ALL  
Sbjct: 463 DGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGA 522

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
             IHG  ++A K   RL+ ++P + + YV++AN+ S  GR  + A VRK+M+DR V+K+ 
Sbjct: 523 CRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKP 582

Query: 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML----HNVGD 496
           G SWIEV  ++H+F+A D  H   + I   L E+M + +++GY P     L      V  
Sbjct: 583 GCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQ 642

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
           RE+   L +HSEKLA++FGL+S    G+ + + KNLRIC DCH + KYIS VV+REI VR
Sbjct: 643 REEELRLGHHSEKLAVSFGLMS-TREGEPILVFKNLRICVDCHNAIKYISEVVKREITVR 701

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D +R+H F +G C+CG  W
Sbjct: 702 DSHRFHCFKDGQCSCGGYW 720



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 199/409 (48%), Gaps = 21/409 (5%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHPT 92
           +N LI+ Y+K + +  + +LF+ +P P+ VS+  LI+A++   ++  +  +FL M R   
Sbjct: 77  FNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEM-REAF 135

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGL--SLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           L    +  TL+ +   C         GL   LH+LS+   L      G+AL+  YS+   
Sbjct: 136 LDM--DGFTLSGIITAC-----GINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGF 188

Query: 151 PDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
              A+++F  + E RD V + +M+V + Q+     +L ++ +M    +   ++ ++  L 
Sbjct: 189 LKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLT 248

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-AGIVSDARRVFDENLSVLNS 268
           A   +  +      H   + SG  +N  VG+GLID Y K  G + D R+VFDE +S  + 
Sbjct: 249 AFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDE-ISNPDL 307

Query: 269 IAWNAMMAGYAQQGDQS-TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
           + WN M++GY+   D S   LE F  L++ G  PD+ S + V++A  N     +  + + 
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQ-VH 366

Query: 328 RMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
            + ++  +    +     LI+   + G L DA+ +   MP E +   + ++++  A HG 
Sbjct: 367 GLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHGM 425

Query: 387 ADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
              +  + +R++++     +  ++ V    +  GR ++      +MK +
Sbjct: 426 GFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQK 474



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 12/225 (5%)

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           PT ++L N   L  L+  C  LS A       H  ++        F  + L+  Y++   
Sbjct: 40  PTSTYLSNHFLL--LYSKCRRLSAARRVFDHTHDCNV--------FSFNTLISAYAKESY 89

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            + A ++FDE+ + D V Y  +I  +A+      +  +F +MR + +    + +SG + A
Sbjct: 90  VEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITA 149

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
                 +   R +H  +VV+GLD  V VG  LI  Y K G + +ARR+F       + ++
Sbjct: 150 CGINVGL--IRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVS 207

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           WN+M+  Y Q  + S  LEL+  + +RG   D ++  +VLTA  N
Sbjct: 208 WNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTN 252


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 191/582 (32%), Positives = 311/582 (53%), Gaps = 23/582 (3%)

Query: 2   ALDLNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60
           AL L  Q +  N +   + +H   +K+  +  + I   L+  YSK + +  + +LF+   
Sbjct: 312 ALKLCSQQRELNFT---KQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMAD 368

Query: 61  SP-NIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLF--KTCASLSH 114
           +  N+V+WTA+I     ++N+  ++++F  M R       PN  T +++   K  + LS 
Sbjct: 369 AAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSRE---GVRPNHFTYSTVLAGKPSSLLSQ 425

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
                  LH+  +K      P   +AL+  Y +  +   + +VF  I  +D+V + AM+ 
Sbjct: 426 -------LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLT 478

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA-MEQCRVIHGHAVVSGLD 233
           G AQ      ++ VF  +    V    Y  S  + A +  AA +E  + IH  AV SG  
Sbjct: 479 GLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKS 538

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
             + V + L+  Y K G +  A +VF       + ++WN+M+ GY Q GD    LE+F +
Sbjct: 539 NALCVSSALLTMYSKKGNIESAEKVFTRQ-EERDIVSWNSMITGYGQHGDAKKALEVFQI 597

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           ++ +G   D+ +F+ VLTA  +AGL  E EK+   M   Y ++  +EHY+C++    RAG
Sbjct: 598 MQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAG 657

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
             + A  I   MPF     +WR LL+   +H   ++     ++L+ + P D   YV+++N
Sbjct: 658 MFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSN 717

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + +  G W+E A VRK+M +R+V+KE G SWIE+K ++  FLAGD  H  ++ +Y KL E
Sbjct: 718 IHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEE 777

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L  + + +GY P  + + H+V +  K   L  HSE+LA+A+GL++  P G  ++I KNLR
Sbjct: 778 LSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIA-LPPGAPIQIEKNLR 836

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IC DCH   + IS + ER ++VRD NR+H F  G C+CG  W
Sbjct: 837 ICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 171/364 (46%), Gaps = 12/364 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH ++LKS    D S+  +L+  Y K+        +F+ +   N+VSWT+L+S ++ +
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L+  +   + +       PN  T A++    A  S     G+ +H++ +K       F 
Sbjct: 184 GLNDEVIHLINQMQMEGVNPNGFTFATVLGALADES-IIEGGVQVHAMIVKNGFEFTTFV 242

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  Y +     +A+ VFD +  RD V +  MI G+A     ++   +F  MR + V
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 198 --GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
               T++C   AL+  ++   +   + +H   V +G +    + T L+  Y K   V +A
Sbjct: 303 KLSRTVFCT--ALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEA 360

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            ++F    +  N + W AM+ G+ Q  +    ++LF  +   G  P+ +++  VL    +
Sbjct: 361 FKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPS 420

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           + L   S+   + +K  Y+  P +   T L+ A  + G + ++ R+  ++P   D   W 
Sbjct: 421 SLL---SQLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIP-AKDIVAWS 474

Query: 376 ALLS 379
           A+L+
Sbjct: 475 AMLT 478



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 8/260 (3%)

Query: 127 LKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186
           +K  LH   F     + F S    P  A ++FDE   +D+  Y  ++  F++N+   ++L
Sbjct: 30  IKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREAL 89

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
            +F D+ SS +G     +S AL+    L      R +H  ++ SG   +V VGT L+D Y
Sbjct: 90  HLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMY 149

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            K     D R +FDE + + N ++W ++++GYA+ G    V+ L + ++M G  P+ ++F
Sbjct: 150 MKTEDFEDGRGIFDE-MGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTF 208

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMA 364
             VL AL +  +  E    +  M V+   E     + C  LI    ++  + DAE +  +
Sbjct: 209 ATVLGALADESII-EGGVQVHAMIVKNGFE--FTTFVCNALICMYLKSEMVGDAEAVFDS 265

Query: 365 MPFEPDAAVWRALL-SFSAI 383
           M    D+  W  ++  ++AI
Sbjct: 266 MVVR-DSVTWNIMIGGYAAI 284



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 34/361 (9%)

Query: 18  PRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           PR  H    ++   D S YN L+ ++S++N    +L LF  + S               S
Sbjct: 54  PRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHS---------------S 98

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L ++                  TL+   K C  L    + G  +H  SLK    +    
Sbjct: 99  GLGVDGL----------------TLSCALKVCGVLFDQVV-GRQVHCQSLKSGFLEDVSV 141

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G++LV  Y +    ++ + +FDE+  ++VV + +++ G+A+N    + + +   M+   V
Sbjct: 142 GTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGV 201

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               +  +  L A A+ + +E    +H   V +G +    V   LI  Y K+ +V DA  
Sbjct: 202 NPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEA 261

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VFD ++ V +S+ WN M+ GYA  G      ++FH + + G       F   L  LC+  
Sbjct: 262 VFD-SMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALK-LCSQQ 319

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
                 K +    V+   E   +  T L+    +   +++A ++        +   W A+
Sbjct: 320 RELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAM 379

Query: 378 L 378
           +
Sbjct: 380 I 380


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 192/592 (32%), Positives = 307/592 (51%), Gaps = 42/592 (7%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNS 77
           +HA+ +K+       I N L+  Y K  L+  +L+LF+ +P  + V+W +L++A   SN 
Sbjct: 25  LHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNR 84

Query: 78  P-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKP 135
           P  +L+I  S+L   +  F P+    ASL K CA+L    +  G  +H+        D  
Sbjct: 85  PHRALSISRSLL---STGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDD 141

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL------------- 182
              S+L+  Y++F  PD  + VFD I   + + +  MI G+A++ R              
Sbjct: 142 VVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYR 201

Query: 183 ------------------VDSLSVFADMRSSDVGSTMYCV-SGALRAAAELAAMEQCRVI 223
                             VD+  +F +MR   +  T   V S  + A A LA  E  + +
Sbjct: 202 NLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQM 261

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           HG  +  G +  + +   LID Y K   +  A+ +F E +   + ++W +++ G AQ G 
Sbjct: 262 HGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCE-MCRKDVVSWTSIIVGTAQHGQ 320

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               L L+  + + G  P+E +F+ ++ A  +AGL  +       M   + + P L+HYT
Sbjct: 321 AEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYT 380

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
           CL+    R+G L++AE +   MP  PD   W ALLS    HG   MA ++   L+++ P 
Sbjct: 381 CLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPE 440

Query: 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER 463
           D S+Y++++N+ +G G W++V++VRK+M     +K  G S I++    HVF AG+  H  
Sbjct: 441 DPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPM 500

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
            ++I   + EL EE  + GY P    +LH++  +EK   L++HSE+LA+A+GL+   P G
Sbjct: 501 RDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVP-G 559

Query: 524 KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             +RIVKNLR+C DCH   K IS +  REI VRD  RYH F +G+C+C D W
Sbjct: 560 TVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 104/213 (48%), Gaps = 7/213 (3%)

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166
           + C++   + L    LH+  +K  L+      + L++ Y +     +A ++FD +  RD 
Sbjct: 10  QLCSAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDP 69

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM--EQCRVIH 224
           V + +++     ++R   +LS+   + S+      +  +  ++A A L  +  +Q + +H
Sbjct: 70  VAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVH 129

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
               +S    + +V + LID Y K G+    R VFD ++S LNSI+W  M++GYA+ G +
Sbjct: 130 ARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFD-SISSLNSISWTTMISGYARSGRK 188

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
                LF     R      +++ A+++ L  +G
Sbjct: 189 FEAFRLFRQTPYRNL----FAWTALISGLVQSG 217


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 199/568 (35%), Positives = 313/568 (55%), Gaps = 29/568 (5%)

Query: 19  RIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR L  +    D   YN L++ +  S     + RLF  +P  ++VSW  ++S  S 
Sbjct: 113 RLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSK 172

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           S     +  +FL+M    ++S+      + S F     +S A  +              +
Sbjct: 173 SGAVEEAKAVFLAMPVRNSVSW----NAMVSGFACSRDMSAAEEW------------FRN 216

Query: 134 KPFCG-----SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
            P  G     +A+V  Y    +   A + F+ +  R++V + A++ G+ +NS   D+L +
Sbjct: 217 APEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRL 276

Query: 189 FADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           F  M R ++V      +S  L   + L+A+   + IH   +   L RN+ VGT L+  Y 
Sbjct: 277 FRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYC 336

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G +S A ++F E +   + +AWNAM++GYAQ GD    + LF  ++  G  P+  +F+
Sbjct: 337 KCGDLSSACKLFGE-MHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFV 395

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           AVLTA  + GL     +  E M+  Y +EP ++HY+C++  + RAG+LE A  +  +MPF
Sbjct: 396 AVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPF 455

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           EP  + +  LL+   ++   + A     +LI+ +P    AYV +AN+ +G  +WD+V+ V
Sbjct: 456 EPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRV 515

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           R+ MKD  V K  G SWIE+KG +H F + DR+H +   I+ KL +L E  + +GYVP  
Sbjct: 516 RRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDL 575

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
           D +LH+V +  K + L  HSEKLA++FGL+S AP G TLRI KNLR+C DCH + K IS+
Sbjct: 576 DFVLHDVDETLKVQMLMRHSEKLAISFGLISTAP-GMTLRIFKNLRVCGDCHNAAKVISK 634

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           + +REI++RD  R+H F  G C+CGD W
Sbjct: 635 IEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 34/236 (14%)

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQN-SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           A++ F     +    Y  ++ G+A+   RL D+  +F  + + D              A 
Sbjct: 85  AEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPD--------------AV 130

Query: 213 ELAAMEQCRVIHGHA------VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
               +  C    G A        S   R+V+    ++ G  K+G V +A+ VF   + V 
Sbjct: 131 SYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVF-LAMPVR 189

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           NS++WNAM++G+A   D S   E F     +G   D   + A+++   + G   ++ ++ 
Sbjct: 190 NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYF 246

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE----PDAAVWRALL 378
           E M VR      L  +  +++   +    +DA R+   M  E    P+A+   ++L
Sbjct: 247 EAMPVR-----NLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVL 297


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 180/517 (34%), Positives = 280/517 (54%), Gaps = 2/517 (0%)

Query: 59  IPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           +P P+ VSWTALI+A+ ++  +L       R       P+  T   +   CA ++     
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
                +   +  + +  F  +A +  Y +    + A+ VFDE++ RD V +GAM+ G+A 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N    ++L +F  M+        Y V GAL A   L A++  R   G      +  N ++
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVL 180

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           GT LID Y K G  S+A  VF + L   + I WNAM+ G    G +     L   ++  G
Sbjct: 181 GTALIDMYAKCGSTSEAWMVFQQMLE-RDIIVWNAMILGLGMTGHEKIAFALVGQMKKSG 239

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
              ++ +F+ +L +  + GL  +  ++   M   Y++ P +EHY C++    RAG LE+A
Sbjct: 240 VKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEA 299

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
            ++   MP   +A VW ALL    IH  AD+A    K+LI + P++   YV+++N+ S  
Sbjct: 300 HQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNS 359

Query: 419 GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC 478
           GRW++ A++R  MK + + K    SW+E+ GKVH F  GD  H  ++ IY KL EL  E 
Sbjct: 360 GRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEM 419

Query: 479 ERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDC 538
           + +GY P  + ++ +V + EK   L +HSEK+A+AF L++  P G+T+R+ KNLR+C DC
Sbjct: 420 KAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEP-GETIRVTKNLRVCTDC 478

Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           H + K ISR+  REIVVRD NR+H F +G C+C D W
Sbjct: 479 HSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/528 (32%), Positives = 290/528 (54%), Gaps = 48/528 (9%)

Query: 52  SLRLFNHIPSPNIVSWTALISAHSNS----PLSLNIFLSMLRHPTLSFLPNQRTLASLFK 107
           S ++F  +P  N++SWTA+I+A+  S      ++ +F  M+               S   
Sbjct: 14  SRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMI---------------SASV 58

Query: 108 TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167
            C                            G++L+  Y+R    ++A+K FD + E+++V
Sbjct: 59  NCV---------------------------GNSLISMYARSGRMEDARKAFDILFEKNLV 91

Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
            Y A++ G+A+N +  ++  +F ++  + +G + +  +  L  AA + AM +   IHG  
Sbjct: 92  SYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL 151

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
           +  G   N  +   LI  Y + G +  A +VF+E +   N I+W +M+ G+A+ G  +  
Sbjct: 152 LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE-MEDRNVISWTSMITGFAKHGFATRA 210

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           LE+FH +   G  P+E +++AVL+A  + G+  E +K    M   + + P +EHY C++ 
Sbjct: 211 LEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVD 270

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
            +GR+G L +A     +MP   DA VWR LL    +HG  ++     + +++  P D +A
Sbjct: 271 LLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAA 330

Query: 408 YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDI 467
           Y++++N+ +  G+W +V ++RK MK+R + KE G SWIEV+ +VH F  G+  H +   I
Sbjct: 331 YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQI 390

Query: 468 YTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLR 527
           Y +L +L  + + +GY+P  D +LH++ + +K + L+ HSEK+A+AFGL+S   + K +R
Sbjct: 391 YQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLIS-TSQSKPIR 449

Query: 528 IVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           I KNLR+C DCH + KYIS    REIVVRD NR+H   NG C+C D W
Sbjct: 450 IFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 136/308 (44%), Gaps = 23/308 (7%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N+LI+ Y++S  +  + + F+ +   N+VS+ A++  ++ +  S   FL           
Sbjct: 63  NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 122

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
            +  T ASL    AS+  A   G  +H   LK          +AL+  YSR  + + A +
Sbjct: 123 ISAFTFASLLSGAASIG-AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQ 181

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF+E+ +R+V+ + +MI GFA++     +L +F  M  +            L A + +  
Sbjct: 182 VFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 241

Query: 217 MEQCR-----VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           + + +     +   H +V  ++        ++D  G++G++ +A    +    + +++ W
Sbjct: 242 ISEGQKHFNSMYKEHGIVPRMEHYAC----MVDLLGRSGLLVEAMEFINSMPLMADALVW 297

Query: 272 NAMMAGYAQQGDQST---VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
             ++      G+        E+  +LE     P  Y  L+ L A  +AG      +W + 
Sbjct: 298 RTLLGACRVHGNTELGRHAAEM--ILEQEPDDPAAYILLSNLHA--SAG------QWKDV 347

Query: 329 MKVRYKLE 336
           +K+R  ++
Sbjct: 348 VKIRKSMK 355


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/565 (34%), Positives = 322/565 (56%), Gaps = 18/565 (3%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SN 76
           +VH   +K   ++D  + N LI  YSK   L  + R+F+ +   ++VSW ++I+A+  ++
Sbjct: 269 LVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQND 328

Query: 77  SPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LHDK 134
            P++ L  F  ML    +   P+  T+ SL      LS   + G ++H   ++   L   
Sbjct: 329 DPVTALGFFKEML---FVGMRPDLLTVVSLASIFGQLSDRRI-GRAVHGFVVRCRWLEVD 384

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              G+ALV+ Y++  S D A+ VF+++  RDV+ +  +I G+AQN    +++  +  M  
Sbjct: 385 IVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEE 444

Query: 195 SDVGSTMYCVSGA----LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
              G T+    G     L A + + A++Q   IHG  + + L  +V V T LID YGK G
Sbjct: 445 ---GRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCG 501

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            + DA  +F E +    S+ WNA+++     G     L+LF  +   G   D  +F+++L
Sbjct: 502 RLEDAMSLFYE-IPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLL 560

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  ++GL  E++   + M+  Y+++P L+HY C++   GRAG LE A  +   MP + D
Sbjct: 561 SACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQAD 620

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A++W  LL+   IHG A++ +    RL++++  +   YV+++N+ + VG+W+   +VR +
Sbjct: 621 ASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSL 680

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
            +DR +RK  G S + V   V VF AG++ H +  +IY +L  L  + + LGYVP +  +
Sbjct: 681 ARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFV 740

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L +V + EK E L  HSE+LA+ FG++S  P+   +RI KNLR+C DCH + KYIS++ E
Sbjct: 741 LQDVEEDEKEEILTSHSERLAIVFGIISTPPK-SPIRIFKNLRVCGDCHNATKYISKITE 799

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REI+VRD NR+H F +G C+CGD W
Sbjct: 800 REIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 182/379 (48%), Gaps = 22/379 (5%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA  L   +A D  +   L+T Y+    LS S   F HI   NI SW +++SA+     
Sbjct: 70  LHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGR 129

Query: 80  SLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
             +    +    +LS + P+  T   + K C SL+     G  +H   LK+      +  
Sbjct: 130 YRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD----GEKMHCWVLKMGFEHDVYVA 185

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           ++L+H YSRF + + A KVF ++  RDV  + AMI GF QN  + ++L V   M++ +V 
Sbjct: 186 ASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVK 245

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                VS  L   A+   +    ++H + +  GL+ +V V   LI+ Y K G + DA+RV
Sbjct: 246 MDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRV 305

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD  + V + ++WN+++A Y Q  D  T L  F  +   G  PD      +LT +  A +
Sbjct: 306 FD-GMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPD------LLTVVSLASI 358

Query: 319 AGE-SEKWIER------MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
            G+ S++ I R      ++ R+ LE  +     L++   + G ++ A  +   +P   D 
Sbjct: 359 FGQLSDRRIGRAVHGFVVRCRW-LEVDIVIGNALVNMYAKLGSIDCARAVFEQLP-SRDV 416

Query: 372 AVWRALLSFSAIHGKADMA 390
             W  L++  A +G A  A
Sbjct: 417 ISWNTLITGYAQNGLASEA 435


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 181/544 (33%), Positives = 306/544 (56%), Gaps = 11/544 (2%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSF 95
           +I+ Y K   L  +   F  +   N V+W A+++ +        +L +F  M    + S 
Sbjct: 72  VISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCER-SRSA 130

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK--LSLHDKPFCGSALVHFYSRFRSPDN 153
            P++ + +   + C++L      G  +H +  +    LH     G+AL++ YS+    + 
Sbjct: 131 RPDKFSFSIAIEACSNLED-LEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEE 189

Query: 154 AKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSDVGSTMYCVSGALRAA 211
           A+KVFD IR + D VC+ AMI  +AQ+ R   +L ++  M  ++D+          +   
Sbjct: 190 ARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVC 249

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           AEL+A++Q R IH     +  D N++V   L+  YGK G + +A  VF  ++ + + I+W
Sbjct: 250 AELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVF-HSMKLKDEISW 308

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N +++ YA  G     L L+  ++++G  P E +F+ +L+A  + GL  +   +  RM+ 
Sbjct: 309 NTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQD 368

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            ++++P + H+ C+I  +GR GRL +AE +  +MP + +A  W +LL     HG      
Sbjct: 369 DHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGV 428

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           +   +++D  P+    YV+++N+ +  GRW +V ++RK+M  R V+K  G+SWIE+   V
Sbjct: 429 RAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVV 488

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F++GDR H + E+IY +L +++EE + LGYVP    + H++ + EK + L  HSEKLA
Sbjct: 489 HEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLA 548

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           + +G +   P    LRIVKNLR+C DCH + K++SR+  R+IVVRD  R+H F NGSC+C
Sbjct: 549 IVYGNMV-VPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSC 607

Query: 572 GDLW 575
            D W
Sbjct: 608 RDYW 611



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 130/258 (50%), Gaps = 7/258 (2%)

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM--RSS 195
           G+A++  Y +    D+A+  F+E++ ++ V + AM+  +  + R  ++L +F +M  RS 
Sbjct: 69  GTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSR 128

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG--LDRNVIVGTGLIDGYGKAGIVS 253
                 +  S A+ A + L  +EQ R IH      G  L ++V+VGT L++ Y K G + 
Sbjct: 129 SARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLE 188

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTA 312
           +AR+VFD      +S+ WNAM+A YAQ G     L+L+  + +    AP + +F+ V+  
Sbjct: 189 EARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVID- 247

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
           +C    A +  + I         +  L     L+   G+ G L++A  +  +M  + D  
Sbjct: 248 VCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLK-DEI 306

Query: 373 VWRALLSFSAIHGKADMA 390
            W  ++S  A HG +D A
Sbjct: 307 SWNTIISSYAYHGHSDQA 324



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 8/206 (3%)

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           ++Q R IH +A +SGL  NV+VGT +I  YGK G + DAR  F+E L   NS+ WNAMM 
Sbjct: 47  IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEE-LQWKNSVTWNAMMT 105

Query: 277 GYAQQGDQSTVLELFHLL--EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
            Y   G     LELF  +    R   PD++SF   + A  N     +  +  E ++   K
Sbjct: 106 NYKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGK 165

Query: 335 -LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            L   +   T L++   + G LE+A ++  ++  + D+  W A+++  A HG+   A  +
Sbjct: 166 ELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDL 225

Query: 394 GKRL---IDINPYDDSAYVIVANVLS 416
            + +    D+ P     +V V +V +
Sbjct: 226 YRSMHDTTDLAP-KQGTFVTVIDVCA 250


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 200/556 (35%), Positives = 307/556 (55%), Gaps = 15/556 (2%)

Query: 31  ADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
            D++  NN L+  Y+K   +  S  LF      ++VSW  +IS+ S S    +  L+  R
Sbjct: 145 GDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSD-RFSEALAFFR 203

Query: 90  HPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LHDKPFCGSALVHFYSR 147
              L  +  +  T+AS+   C+ L      G  +H+  L+ + L +  F GSALV  Y  
Sbjct: 204 LMVLEGVELDGVTIASVLPACSHLER-LDVGKEIHAYVLRNNDLIENSFVGSALVDMYCN 262

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM--RSSDVGSTMYCVS 205
            R  ++ ++VFD I  R +  + AMI G+A+N     +L +F +M   +  + +T    S
Sbjct: 263 CRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMAS 322

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
                   LAA+ + + IH +A+ + L  ++ VG+ L+D Y K G ++ +RRVF+E +  
Sbjct: 323 VMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNE-MPN 381

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLL---EMRG--FAPDEYSFLAVLTALCNAGLAG 320
            N I WN ++      G     LELF  +     RG    P+E +F+ V  A  ++GL  
Sbjct: 382 KNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLIS 441

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD-AAVWRALLS 379
           E      RMK  + +EP  +HY C++  +GRAG+LE+A  +   MP E D    W +LL 
Sbjct: 442 EGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLG 501

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IH   ++     K L+ + P   S YV+++N+ S  G W++  EVRK M+   V+KE
Sbjct: 502 ACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKE 561

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SWIE + +VH F+AGD  H ++E ++  L  L E+  + GYVP    +LHNV + EK
Sbjct: 562 PGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEK 621

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              L  HSEKLA+AFG+++  P G T+R+ KNLR+C DCH + K+IS+++EREI+VRDV 
Sbjct: 622 ENLLCGHSEKLAIAFGILN-TPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVR 680

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F  G+C+CGD W
Sbjct: 681 RFHHFKEGTCSCGDYW 696



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 11/110 (10%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +HA A+++  A D ++ + L+  Y+K   L+ S R+FN +P+ N+++W  LI A   H  
Sbjct: 340 IHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGK 399

Query: 77  SPLSLNIFLSMLRHPTLS--FLPNQRTLASLFKTCASLSHAFLF--GLSL 122
              +L +F +M+          PN+ T  ++F  C   SH+ L   GL+L
Sbjct: 400 GEEALELFKNMVAEAGRGGEAKPNEVTFITVFAAC---SHSGLISEGLNL 446


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 311/583 (53%), Gaps = 37/583 (6%)

Query: 9   PQPQNTSTDPRIVHARALKSSQADRSIYN-----NLIT---NYSKSNLLSYSL----RLF 56
           P P   S  P+    + LK  QA     N     N+IT   N+  SN    S+    +LF
Sbjct: 25  PLPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLF 84

Query: 57  NHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS--- 113
           + I  PNIV +  +   ++     LN  L M+ H               F+ C  L    
Sbjct: 85  DQITQPNIVLFNTMARGYAR----LNDPLRMITH---------------FRRCLRLVSKV 125

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
            A   G  LH  ++KL + D  +    L++ Y+     D +++VFD+I E  VV Y A+I
Sbjct: 126 KALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAII 185

Query: 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
           +  A+N+R  ++L++F +++   +  T   +   L + A L +++  R +H +    G D
Sbjct: 186 MSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFD 245

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           R V V T LID Y K G + DA  VF  ++   ++ AW+A++  YA  GD    + + + 
Sbjct: 246 RYVKVNTTLIDMYAKCGSLDDAVNVF-RDMPKRDTQAWSAIIVAYATHGDGFQAISMLNE 304

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           ++     PDE +FL +L A  + GL  E  ++   M   Y + P ++HY C++  +GRAG
Sbjct: 305 MKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAG 364

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           RL++A +    +P +P   +WR LLS  + HG  +M  ++ +R+ +++      YVI +N
Sbjct: 365 RLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSN 424

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + +  G+WD+V  +RK M D+   K  G S IEV   VH F AG+ +H  +  ++  L E
Sbjct: 425 LCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDE 484

Query: 474 LMEECERLGYVPVWDEMLH-NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNL 532
           L++E +  GYVP    + + ++ D EK   L YHSEKLA+ FGL++  P G T+R+VKNL
Sbjct: 485 LVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLN-TPPGTTIRVVKNL 543

Query: 533 RICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           R+C DCH + K+IS +  R+I++RDV R+H F +G C+CGD W
Sbjct: 544 RVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 176/480 (36%), Positives = 269/480 (56%), Gaps = 8/480 (1%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN  T +++      +S        +H+ ++K +    P  G+AL+  Y +  + D A K
Sbjct: 8   PNDFTYSTILTAQPGVS-----PFEMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASK 62

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA-AAELA 215
           VF  I E+D+V + AMI G+AQ      ++ +F  M    +    Y  SG + A AA  A
Sbjct: 63  VFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTA 122

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            +EQ + +H  ++ S  +  + V + L+  Y K G +  A  VF       + ++WN+++
Sbjct: 123 GVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRE-RDLVSWNSII 181

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           +GYAQ G     LE+F  ++ +    D  +F+ V++A  + GLA E +++ + M   + +
Sbjct: 182 SGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHI 241

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           EP +EHY+C++   GRAG L  A  I   MPF   A VWR LL+ S IH   ++      
Sbjct: 242 EPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAAD 301

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
           +LI + P + ++YV++ N+ + VG W E A+VRK+M++++V+K  G SWIEVK K + FL
Sbjct: 302 KLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKNKTYTFL 361

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
           AGD  H  +  IY KL EL  + +  GY P    +  +V +  K   L  HSE+LA+AFG
Sbjct: 362 AGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSERLAIAFG 421

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           L+ G P G  L+IVKNLR+C DCH   K IS +  R+IVVRD NR+H F  G C+CGD W
Sbjct: 422 LI-GTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLCSCGDYW 480



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 152/342 (44%), Gaps = 30/342 (8%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           L  QP        P  +HA+A+K +     S+   L+  Y K   +  + ++F  I   +
Sbjct: 17  LTAQP-----GVSPFEMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEKD 71

Query: 64  IVSWTALISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
           IV+W+A+I  ++   ++  ++ IF+ M +       PN+ T + +   CA+ +     G 
Sbjct: 72  IVAWSAMICGYAQIGDTEGAVRIFVQMAKE---KIKPNEYTFSGIINACAAPTAGVEQGK 128

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            LH+ S+K   ++     SAL+  YS+    ++A +VF   RERD+V + ++I G+AQ+ 
Sbjct: 129 QLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHG 188

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR-----VIHGHAVVSGLDRN 235
               +L VF +M+  ++        G + A        + +     ++  H +   ++  
Sbjct: 189 YGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHY 248

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA-QQGDQSTVLELFHLL 294
               + ++D YG+AG++  A  + +E     ++  W  ++A     +  +   L    L+
Sbjct: 249 ----SCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAADKLI 304

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
            ++   P  Y  L  + A            W ER KVR  +E
Sbjct: 305 SLQPQNPASYVLLTNMYASVG--------NWKERAKVRKLME 338


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/568 (33%), Positives = 313/568 (55%), Gaps = 15/568 (2%)

Query: 16   TDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
            T  R +H    K     D S+ N L+T Y++++ ++   ++F  +P  + VSW + I A 
Sbjct: 574  TLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGAL 633

Query: 75   SNSPLS----LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
            +    S    L  FL M++     + PN+ T  ++    +S S     G  +H+L LK S
Sbjct: 634  AKYEASVLQALKYFLEMMQ---AGWRPNRVTFINILAAVSSFS-VLGLGHQIHALILKYS 689

Query: 131  LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVF 189
            + D     +AL+ FY +    ++ + +F  + ER D V + +MI G+  +  L  ++ + 
Sbjct: 690  VADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLV 749

Query: 190  ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
              M         +  +  L A A +A +E+   +H  AV + L+ +V+VG+ L+D Y K 
Sbjct: 750  WPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKC 809

Query: 250  GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
            G +  A R F E + V N  +WN+M++GYA+ G     L++F  ++  G +PD  +F+ V
Sbjct: 810  GKIDYASRFF-ELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGV 868

Query: 310  LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
            L+A  + GL  E  K  + M   Y L P +EH++C++  +GRAG ++  E     MP +P
Sbjct: 869  LSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDP 928

Query: 370  DAAVWRALLSFSA-IHGK-ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            +  +WR +L      +G+  ++  +  K LI++ P +   YV+++N+ +  G W++V E 
Sbjct: 929  NILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEA 988

Query: 428  RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
            R  M+   V+K+ G SW+ +K  VH+F+AGD+ H   E IY KL ELM +    GYVP  
Sbjct: 989  RLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPET 1048

Query: 488  DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
               L+++    K E L YHSEKLA+AF L   +     +RI+KNLR+C DCH +FKYIS+
Sbjct: 1049 KYALYDLELENKEELLSYHSEKLAIAFVLTRKSEL--PIRIMKNLRVCGDCHTAFKYISK 1106

Query: 548  VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            +V R+I++RD NR+H F  G C+CGD W
Sbjct: 1107 IVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 171/347 (49%), Gaps = 20/347 (5%)

Query: 82  NIFLSMLRHPTLSFLPNQRTLASL--FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           N   + LRH T S    Q+  +    +KT +SL  A    L L+    K    D  F  +
Sbjct: 124 NSTYTFLRHYTFSHSQLQQLDSEFDRYKTSSSLYDANHLHLQLY----KTGFTDDVFFCN 179

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            L++ Y R  +  +A+K+FDE+ ++++V +  +I G+ QN    ++ S+F  + SS +  
Sbjct: 180 TLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLP 239

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD--RNVIVGTGLIDGYGK-AGIVSDAR 256
             + V  ALRA  +  +      +  HA +  L    ++I+   L+  Y   +G + DA 
Sbjct: 240 NHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAH 299

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG----FAPDEYSFLAVLTA 312
           RVFDE +   NS+ WN++++ Y ++GD  +  +LF +++M G      P+EY+  +++TA
Sbjct: 300 RVFDE-IKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTA 358

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHY---TCLISAMGRAGRLEDAERIAMAMPFEP 369
            C+  LA      +E+M  R +    L      + L++   R G ++ A+ I   M ++ 
Sbjct: 359 ACS--LADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQM-YDR 415

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A     L+   A   + + A+K+ K + D+   +  + V++ +  +
Sbjct: 416 NAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFT 462



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 141/303 (46%), Gaps = 10/303 (3%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF-CGSALVHFYSRFRSPDNAKKVFD 159
            L S F   ++L      G  +H+   +  L D     G+ALV+ Y +  + DNA  VF 
Sbjct: 456 VLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQ 515

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
            +  +D V + +MI G   N R  +++S F  M+ + +  + + V   L + + L  +  
Sbjct: 516 LMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTL 575

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            R IHG     GLD +V V   L+  Y +   +++ ++VF + +   + ++WN+ +   A
Sbjct: 576 GRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQ-MPEYDQVSWNSFIGALA 634

Query: 280 QQGDQSTVLELFHLLEMR--GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           +  + S +  L + LEM   G+ P+  +F+ +L A+ +  + G   + I  + ++Y +  
Sbjct: 635 KY-EASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQ-IHALILKYSVAD 692

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS----FSAIHGKADMASKM 393
                  L++  G+  ++ED E I   M    D   W +++S       +H   D+   M
Sbjct: 693 DNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPM 752

Query: 394 GKR 396
            +R
Sbjct: 753 MQR 755



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 173/384 (45%), Gaps = 32/384 (8%)

Query: 17  DPRIVHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D   +H +  K+   D   + N LI  Y +   L  + +LF+ +P  N+VSW+ LIS ++
Sbjct: 158 DANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYT 217

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL-SHAFLFGLSLHSLSLKLSL 131
            + +   + ++F  ++   +   LPN   + S  + C    S     G+ +H+   KL  
Sbjct: 218 QNRMPDEACSLFKGVI---SSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPC 274

Query: 132 HDKPFCGSALVHFYSRFR-SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                  + L+  YS    S D+A +VFDEI+ R+ V + ++I  + +    V +  +F+
Sbjct: 275 VSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFS 334

Query: 191 DMRSSDVGSTM----YCVSGALRAAAELAAMEQCRVIHGHAVV-----SGLDRNVIVGTG 241
            M+   V   +    Y +   + AA  LA    C ++    ++     SG  R++ VG+ 
Sbjct: 335 VMQMEGVELNLRPNEYTLCSLVTAACSLA---DCGLVLLEQMLTRIEKSGFLRDLYVGSA 391

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           L++G+ + G++  A+ +F + +   N++  N +M G A+Q       ++F   EM+    
Sbjct: 392 LVNGFARYGLMDCAKMIFKQ-MYDRNAVTMNGLMVGLARQHQGEEAAKVFK--EMKDLVE 448

Query: 302 -DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY-----TCLISAMGRAGRL 355
            +  S + +L+         E ++  + +   Y    GL          L++  G+   +
Sbjct: 449 INSESLVVLLSTFTEFSNLKEGKRKGQEVHA-YLFRSGLVDARISIGNALVNMYGKCTAI 507

Query: 356 EDAERIAMAMPFEPDAAVWRALLS 379
           ++A  +   MP   D   W +++S
Sbjct: 508 DNACSVFQLMP-SKDTVSWNSMIS 530


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 199/568 (35%), Positives = 313/568 (55%), Gaps = 29/568 (5%)

Query: 19  RIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR L  +    D   YN L++ +  S     + RLF  +P  ++VSW  ++S  S 
Sbjct: 64  RLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSK 123

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           S     +  +FL+M    ++S+      + S F     +S A            +    +
Sbjct: 124 SGAVEEAKAVFLAMPVRNSVSW----NAMVSGFACSRDMSAA------------EEWFRN 167

Query: 134 KPFCG-----SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
            P  G     +A+V  Y    +   A + F+ +  R++V + A++ G+ +NS   D+L +
Sbjct: 168 APEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRL 227

Query: 189 FADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           F  M R ++V      +S  L   + L+A+   + IH   +   L RN+ VGT L+  Y 
Sbjct: 228 FRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYC 287

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G +S A ++F E +   + +AWNAM++GYAQ GD    + LF  ++  G  P+  +F+
Sbjct: 288 KCGDLSSACKLFGE-MHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFV 346

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           AVLTA  + GL     +  E M+  Y +EP ++HY+C++  + RAG+LE A  +  +MPF
Sbjct: 347 AVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPF 406

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           EP  + +  LL+   ++   + A     +LI+ +P    AYV +AN+ +G  +WD+V+ V
Sbjct: 407 EPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRV 466

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           R+ MKD  V K  G SWIE+KG +H F + DR+H +   I+ KL +L E  + +GYVP  
Sbjct: 467 RRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDL 526

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
           D +LH+V +  K + L  HSEKLA++FGL+S AP G TLRI KNLR+C DCH + K IS+
Sbjct: 527 DFVLHDVDETLKVQMLMRHSEKLAISFGLISTAP-GMTLRIFKNLRVCGDCHNAAKVISK 585

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           + +REI++RD  R+H F  G C+CGD W
Sbjct: 586 IEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 34/236 (14%)

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQN-SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           A++ F     +    Y  ++ G+A+   RL D+  +F  + + D              A 
Sbjct: 36  AEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPD--------------AV 81

Query: 213 ELAAMEQCRVIHGHA------VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
               +  C    G A        S   R+V+    ++ G  K+G V +A+ VF   + V 
Sbjct: 82  SYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVF-LAMPVR 140

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           NS++WNAM++G+A   D S   E F     +G   D   + A+++   + G   ++ ++ 
Sbjct: 141 NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYF 197

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE----PDAAVWRALL 378
           E M VR      L  +  +++   +    +DA R+   M  E    P+A+   ++L
Sbjct: 198 EAMPVR-----NLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVL 248


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 201/564 (35%), Positives = 300/564 (53%), Gaps = 52/564 (9%)

Query: 56  FNHIPSPNIVSWTALISAH----------SNSPLSLNIFLSMLRHPTLSFLPNQRTLASL 105
           F+H P+     W  LI AH          ++SP+S  IF+ M  H      P+  T   L
Sbjct: 17  FSH-PTLESFLWNTLIRAHVQARAQPTGPTHSPIS--IFVRMRFH---GVQPDFHTFPFL 70

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR--- 162
            ++ AS S   L G S+H+  L+  L   PF  ++L+  YS   +   A++VFDEI    
Sbjct: 71  LQSFASPSLLHL-GRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPD 129

Query: 163 ----------------------------ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
                                       ER+V+ +  MI G+ +  +  ++L++F +M+ 
Sbjct: 130 LPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQM 189

Query: 195 ---SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
              +DV    + +SG L A   L A+E  +  H +    G+  +V++GT LID Y K G 
Sbjct: 190 LGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGS 249

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           V  A  VF       + +AW+AM++G A  G     + LF  +  +G  P+  +FLAV  
Sbjct: 250 VEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFC 309

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  E + ++ RM   Y + P ++HY C++   GRAGR+++A  +  +MP EPD 
Sbjct: 310 ACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDV 369

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            VW ALLS S +HG  +      K+LI++ P +  AYV+++NV +  GRW++V  VR +M
Sbjct: 370 LVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLM 429

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           +   ++K  G S IEV G +H F  GD  H  T  I+  L E++E  +  GYV    E+L
Sbjct: 430 ETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVL 489

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            ++ +  K  AL  HSEKLALA+G +  +P G  +RIVKNLRICRDCH + K IS+V +R
Sbjct: 490 LDLDEEGKELALSLHSEKLALAYGFLKTSP-GTPIRIVKNLRICRDCHVAIKMISKVFDR 548

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD NR+H F  G C+C D W
Sbjct: 549 EIIVRDCNRFHHFTQGLCSCRDYW 572



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 139/339 (41%), Gaps = 61/339 (17%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA+ L+   A D  +  +LI+ YS    L ++ ++F+ IP P++ SW ++I+A+  +
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQA 143

Query: 78  PL---SLNIFLSMLRHPTLSF-------------------------------LPNQRTLA 103
            L   + N+F  M     +S+                                PN+ T++
Sbjct: 144 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 203

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI-R 162
            +   C  L  A   G   H+   K  +      G+AL+  Y++  S + A  VF  +  
Sbjct: 204 GVLAACGRLG-ALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGP 262

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
            +DV+ + AMI G A +    + + +F+ M           ++  +R  A       C  
Sbjct: 263 NKDVMAWSAMISGLAMHGLAEECVGLFSKM-----------INQGVRPNAVTFLAVFCAC 311

Query: 223 IHGHAVVSGLDR-------NVIVGT-----GLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
           +HG  V  G D          I+ T      ++D YG+AG + +A  V        + + 
Sbjct: 312 VHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLV 371

Query: 271 WNAMMAGYAQQGDQSTV-LELFHLLEMRGFAPDEYSFLA 308
           W A+++G    GD  T  L L  L+E+       Y  L+
Sbjct: 372 WGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLS 410


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 191/582 (32%), Positives = 310/582 (53%), Gaps = 23/582 (3%)

Query: 2   ALDLNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60
           AL L  Q +  N +   + +H   +K+  +  + I   L+  YSK + +  + +LF+   
Sbjct: 312 ALKLCSQQRELNFT---KQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMAD 368

Query: 61  SP-NIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLF--KTCASLSH 114
           +  N+V+WTA+I     ++N+  ++++F  M R       PN  T +++   K  + LS 
Sbjct: 369 AAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSRE---GVRPNHFTYSTVLAGKPSSLLSQ 425

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
                  LH+  +K      P   +AL+  Y +  +   + +VF  I  +D+V + AM+ 
Sbjct: 426 -------LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLT 478

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA-MEQCRVIHGHAVVSGLD 233
           G AQ      ++ VF  +    V    Y  S  + A +  AA +E  + IH  AV SG  
Sbjct: 479 GLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKS 538

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
             + V + L+  Y K G +  A +VF       + ++WN+M+ GY Q GD    LE+F +
Sbjct: 539 NALCVSSALLTMYSKKGNIESAEKVFTRQ-EERDIVSWNSMITGYGQHGDAKKALEVFQI 597

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           ++ +G   D+ +F+ VLTA  +AGL  E EK+   M   Y ++   EHY+C++    RAG
Sbjct: 598 MQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAG 657

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
             + A  I   MPF     +WR LL+   +H   ++     ++L+ + P D   YV+++N
Sbjct: 658 MFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSN 717

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + +  G W+E A VRK+M +R+V+KE G SWIE+K ++  FLAGD  H  ++ +Y KL E
Sbjct: 718 IHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEE 777

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L  + + +GY P  + + H+V +  K   L  HSE+LA+A+GL++  P G  ++I KNLR
Sbjct: 778 LSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIA-LPPGAPIQIEKNLR 836

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IC DCH   + IS + ER ++VRD NR+H F  G C+CG  W
Sbjct: 837 ICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 171/364 (46%), Gaps = 12/364 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH ++LKS    D S+  +L+  Y K+        +F+ +   N+VSWT+L+S ++ +
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L+  +   + +       PN  T A++    A  S     G+ +H++ +K       F 
Sbjct: 184 GLNDEVIHLINQMQMEGVNPNGFTFATVLGALADES-IIEGGVQVHAMIVKNGFEFTTFV 242

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  Y +     +A+ VFD +  RD V +  MI G+A     ++   +F  MR + V
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 198 --GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
               T++C   AL+  ++   +   + +H   V +G +    + T L+  Y K   V +A
Sbjct: 303 KLSRTVFCT--ALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEA 360

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            ++F    +  N + W AM+ G+ Q  +    ++LF  +   G  P+ +++  VL    +
Sbjct: 361 FKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPS 420

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           + L   S+   + +K  Y+  P +   T L+ A  + G + ++ R+  ++P   D   W 
Sbjct: 421 SLL---SQLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIP-AKDIVAWS 474

Query: 376 ALLS 379
           A+L+
Sbjct: 475 AMLT 478



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 8/260 (3%)

Query: 127 LKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186
           +K  LH   F     + F S    P  A ++FDE   +D+  Y  ++  F++N+   ++L
Sbjct: 30  IKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREAL 89

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
            +F D+ SS +G     +S AL+    L      R +H  ++ SG   +V VGT L+D Y
Sbjct: 90  HLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMY 149

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            K     D R +FDE + + N ++W ++++GYA+ G    V+ L + ++M G  P+ ++F
Sbjct: 150 MKTEDFEDGRGIFDE-MGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTF 208

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMA 364
             VL AL +  +  E    +  M V+   E     + C  LI    ++  + DAE +  +
Sbjct: 209 ATVLGALADESII-EGGVQVHAMIVKNGFE--FTTFVCNALICMYLKSEMVGDAEAVFDS 265

Query: 365 MPFEPDAAVWRALL-SFSAI 383
           M    D+  W  ++  ++AI
Sbjct: 266 MVVR-DSVTWNIMIGGYAAI 284



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 34/361 (9%)

Query: 18  PRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           PR  H    ++   D S YN L+ ++S++N    +L LF  + S               S
Sbjct: 54  PRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHS---------------S 98

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L ++                  TL+   K C  L    + G  +H  SLK    +    
Sbjct: 99  GLGVDGL----------------TLSCALKVCGVLFDQVV-GRQVHCQSLKSGFLEDVSV 141

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G++LV  Y +    ++ + +FDE+  ++VV + +++ G+A+N    + + +   M+   V
Sbjct: 142 GTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGV 201

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               +  +  L A A+ + +E    +H   V +G +    V   LI  Y K+ +V DA  
Sbjct: 202 NPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEA 261

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VFD ++ V +S+ WN M+ GYA  G      ++FH + + G       F   L  LC+  
Sbjct: 262 VFD-SMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALK-LCSQQ 319

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
                 K +    V+   E   +  T L+    +   +++A ++        +   W A+
Sbjct: 320 RELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAM 379

Query: 378 L 378
           +
Sbjct: 380 I 380


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 180/564 (31%), Positives = 309/564 (54%), Gaps = 8/564 (1%)

Query: 16  TDPRIVHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T+ +I+H   +     D  I  N LIT Y K + ++ + ++F  +P  + V+W ALI   
Sbjct: 379 TNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGF 438

Query: 75  SNSPLSLN---IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           +N+   LN       ++R  + S + +  T+ ++  +C +      +G+ +H+ ++    
Sbjct: 439 ANNA-ELNEAVAAFKLMREGSTSGV-DYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGF 496

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                  S+L+  Y++     ++  +FD++  +    + A+I   A+     ++L +   
Sbjct: 497 DLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVR 556

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MRS+ +    +  S AL  AA+LA +E+ + +HG  +  G + +  +    +D YGK G 
Sbjct: 557 MRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGE 616

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA R+  +     + ++WN +++  A+ G      E FH +   G  P+  SF+ +L+
Sbjct: 617 LDDALRILPQPTD-RSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLS 675

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  E   +   M   Y ++PG+EH  C+I  +GR+GRL +AE     MP  P+ 
Sbjct: 676 ACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPND 735

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            VWR+LL+   I+   D+  K  K L++++P DDSAYV+ +NV + +GRW++V +VR  M
Sbjct: 736 LVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQM 795

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
              +++K+   SW++ KG + +F  GD+ H + E I  KL  LM+     GYVP     L
Sbjct: 796 GAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLGLMKIVGEAGYVPDTSYSL 855

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            +  + +K   +W HSE++ALAFGL++  P G T+RI KNLR+C DCH  FK++S V+ R
Sbjct: 856 QDTDEEQKEHNMWSHSERIALAFGLIN-IPEGSTVRIFKNLRVCGDCHSFFKFVSGVLGR 914

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           +IV+RD  R+H F NG+C+C D W
Sbjct: 915 KIVLRDPYRFHHFTNGNCSCSDYW 938



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 172/376 (45%), Gaps = 21/376 (5%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP- 78
           VH  A+K   +++  + N L++ YS +     +  +F  +P  +++SW ++++ +     
Sbjct: 283 VHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGR 342

Query: 79  --LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F  ML    +    N  T  S    C      F  G  LH   + L L D+  
Sbjct: 343 CLCALKVFAEMLW---MKKEINYVTFTSALAACLD-PEFFTNGKILHGFVVVLGLQDELI 398

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+ L+ FY +      AKKVF  + + D V + A+I GFA N+ L ++++ F  MR   
Sbjct: 399 IGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGS 458

Query: 197 VGSTMYC----VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
                Y     + G+     +L  ++    IH H VV+G D +  V + LI  Y K G +
Sbjct: 459 TSGVDYITIVNILGSCLTHEDL--IKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDL 516

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             +  +FD+ L    S  WNA++A  A+ G     L+L   +   G   D+++F   L+ 
Sbjct: 517 HSSSYIFDQ-LVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSV 575

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPD 370
             +  +  E ++ +    ++   E  L+H+     +   G+ G L+DA RI +  P +  
Sbjct: 576 AADLAMLEEGQQ-LHGSTIKLGFE--LDHFIINAAMDMYGKCGELDDALRI-LPQPTDRS 631

Query: 371 AAVWRALLSFSAIHGK 386
              W  L+S SA HG+
Sbjct: 632 RLSWNTLISISARHGQ 647



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 165/351 (47%), Gaps = 3/351 (0%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
           YSK   ++Y+  +F+ +   N  SW  ++S +      +   L       +   P+   +
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           ASL   C   S     G   H  ++K  L    F G++ VHFY+ +    NA+K+F+E+ 
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +R+VV + +++V ++ N    + ++ +  MR   +      ++  + +   L  +     
Sbjct: 122 DRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQ 181

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           + GHA+  GL+  V     LI  +G  G +++A  +F+E ++  ++I+WN++++  AQ  
Sbjct: 182 LLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNE-MNERDTISWNSIISANAQNT 240

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                   FH + +       Y+ L++L ++C +    +  K +  + V+Y LE  +   
Sbjct: 241 LHEESFRYFHWMRLV-HEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLC 299

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
             L+S    AGR +DAE I   MP E D   W ++L+     G+   A K+
Sbjct: 300 NTLLSVYSDAGRSKDAELIFRRMP-ERDLISWNSMLACYVQDGRCLCALKV 349



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 184/387 (47%), Gaps = 20/387 (5%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSM-LRHPT 92
           N+LI  +     ++ +  +FN +   + +SW ++ISA++ + L   S   F  M L H  
Sbjct: 199 NSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEE 258

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           +    N  TL+ L   C S+ +   +G  +H L++K  L       + L+  YS      
Sbjct: 259 I----NYTTLSILLSICGSVDY-LKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSK 313

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A+ +F  + ERD++ + +M+  + Q+ R + +L VFA+M            + AL A  
Sbjct: 314 DAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACL 373

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           +       +++HG  VV GL   +I+G  LI  YGK   +++A++VF + +  L+ + WN
Sbjct: 374 DPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVF-QRMPKLDKVTWN 432

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW---IERM 329
           A++ G+A   + +  +  F L  MR  +     ++ ++  L +     +  K+   I   
Sbjct: 433 ALIGGFANNAELNEAVAAFKL--MREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAH 490

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
            V    +      + LI+   + G L  +  I   + F+  ++VW A+++ +A +G  + 
Sbjct: 491 TVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKT-SSVWNAIIAANARYGFGEE 549

Query: 390 ASKMGKRL----IDINPYDDSAYVIVA 412
           A K+  R+    I+ + ++ S  + VA
Sbjct: 550 ALKLVVRMRSAGIEFDQFNFSTALSVA 576


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 319/572 (55%), Gaps = 24/572 (4%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP--NIVSWTALISA-- 73
           R +H+ A  S   +  S+ N+L+T YSK+ +L  +  +FN +     + VSW ++I A  
Sbjct: 158 RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYG 217

Query: 74  -HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            H     +L ++  M+      F  +  TLAS+  T + +      GL  H+ ++K   +
Sbjct: 218 QHKRGLKALALYRDMVHR---GFEIDMFTLASVLTTFSCVED-LSGGLQFHAKAIKTGFN 273

Query: 133 DKPFCGSALVHFYSRFRSP-DNAKKVFDEIRERDVVCYGAMIVGFAQNSRL-VDSLSVFA 190
                GS L+  Y++  +    ++KVF+EI   D+V +  MI G++QN  L V++L  F 
Sbjct: 274 KNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFR 333

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKA 249
            M+ +           A+ A + L++  Q +  H  A+ S +  N I V   L+  Y K 
Sbjct: 334 QMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKC 393

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G + DAR++F + +   N++  N+++AGYAQ G  +  L LF  +     AP   + +++
Sbjct: 394 GNLQDARKLF-QRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSI 452

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L+A  + G   E +K+   MK  + +EP  EHY+C+I  +GRAG+L +AER+   MPF P
Sbjct: 453 LSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSP 512

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
            +A W ALL     +G  ++A K   + + + P +   Y+++A++ S   +W+E A +RK
Sbjct: 513 GSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRK 572

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP---- 485
           +M+DR +RK+ G SWIE+  +VHVF+A D  H R ++I+  L E+  + +R GYVP    
Sbjct: 573 LMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRW 632

Query: 486 --VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
             V D+     G++EK   L +HSEKLA+AFGL+     G+ L +VKNLRIC DCH + K
Sbjct: 633 AFVKDD---ETGEQEKEIMLAHHSEKLAVAFGLLF-TKHGEPLLVVKNLRICGDCHNAIK 688

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++S +  R+I VRD  R+H F +G C+CGD W
Sbjct: 689 FMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 205/405 (50%), Gaps = 14/405 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           +N LI  Y+K +L+  +  LF+ IP P++VS+  LI+A+++   +L+          +  
Sbjct: 77  FNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGL 136

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           + +  T + +   C   +H  L    LHSL+            ++L+ +YS+    + A+
Sbjct: 137 VMDGFTFSGVITACC--NHVGLI-RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAE 193

Query: 156 KVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
            VF+ + E  RD V + +MIV + Q+ R + +L+++ DM        M+ ++  L   + 
Sbjct: 194 MVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSC 253

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI-VSDARRVFDENLSVLNSIAWN 272
           +  +      H  A+ +G ++N  VG+GLID Y K G  +S++R+VF+E +   + + WN
Sbjct: 254 VEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEE-ICGSDLVVWN 312

Query: 273 AMMAGYAQQGDQST-VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE-KWIERMK 330
            M++GY+Q  + S   LE F  ++  G+ PD+ SF+  ++A  N  L+  S+ K    + 
Sbjct: 313 TMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSN--LSSPSQGKQFHALA 370

Query: 331 VRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
           ++ ++    +     L++   + G L+DA ++   MP + +     ++++  A HG    
Sbjct: 371 MKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMP-QHNTVTLNSIIAGYAQHGIGTE 429

Query: 390 ASKMGKRLIDINPYDDSAYVI-VANVLSGVGRWDEVAEVRKVMKD 433
           +  + ++++  +    S  ++ + +  +  GR +E  +   +MKD
Sbjct: 430 SLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKD 474



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 20/235 (8%)

Query: 91  PTLSFLPNQRTLASLFKTCASLS---HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           P+ ++L N   L  L+  C  L+   HAF             +     F  +AL+  Y++
Sbjct: 40  PSSTYLSNHFIL--LYSKCNLLTTAHHAF-----------NQTHEPNVFSFNALIAAYAK 86

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
                 A  +FD+I + D+V +  +I  +A     + +LS+F +MR   +    +  SG 
Sbjct: 87  ESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGV 146

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVL 266
           + A      +   R +H  A  SG D  V V   L+  Y K GI+ +A  VF+     V 
Sbjct: 147 ITACCNHVGL--IRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVR 204

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL-CNAGLAG 320
           + ++WN+M+  Y Q       L L+  +  RGF  D ++  +VLT   C   L+G
Sbjct: 205 DEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSG 259


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 187/557 (33%), Positives = 305/557 (54%), Gaps = 5/557 (0%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  A+K+S   D  + N L+  YSK + +  +  LF+ +P  + VS+  +I+ ++ +  
Sbjct: 266 IHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQ 325

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
               F    R    SF       A++  + A++      G   H+ ++  +   +   G+
Sbjct: 326 YEKSFDLFKRLQGTSFDRKNFPFATML-SVAAIELNLSMGRQTHAQAVVTTAVSEVQVGN 384

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV  Y++    ++A ++F  +  R+ V + A+I  + Q     ++L +F +M   +V  
Sbjct: 385 ALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHG 444

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                +  L+A+A LA++   + +H   +  GL  +V  G+ L+D Y   G + DA  VF
Sbjct: 445 DQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVF 504

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E +   N + WNA+++ Y+Q GD       F  +   G  PD  SFL+VLTA  + GL 
Sbjct: 505 KE-MPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLV 563

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            ++  +   M   YKL+P  +HY  +I  + R+GR  +AE +   MPFEPD  +W ++L+
Sbjct: 564 EKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLN 623

Query: 380 FSAIHGKADMASKMGKRLIDINPY-DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
              IH   D+A K   +L  ++   D +AYV ++N+ +  G+W+  A+V+K M++R V+K
Sbjct: 624 SCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKK 683

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
               SW+E+  +VHVF A DR H +TE I  K+  L+E  ++ GY P     L NV +  
Sbjct: 684 VTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEM 743

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K E+L YHSE+LA+AF L++  P G  + I+KNLR C DCH + K IS++V REI VRD 
Sbjct: 744 KIESLKYHSERLAIAFALIN-TPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDS 802

Query: 559 NRYHRFLNGSCTCGDLW 575
           +R+H F +GSC+CGD W
Sbjct: 803 SRFHHFRDGSCSCGDYW 819



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 179/376 (47%), Gaps = 12/376 (3%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           ++N+L+ +Y K+  L  + +LF+ +P+ + VS+  +I+ ++       +L +F+ M    
Sbjct: 180 VFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQM---R 236

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            + F P+  T A++       S   +FG  +H L++K S     F  +AL+ FYS+    
Sbjct: 237 NMDFQPSGFTFAAMLGMSVG-SEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYI 295

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           D AK +FDE+ E D V Y  +I G+A N +   S  +F  ++ +      +  +  L  A
Sbjct: 296 DLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVA 355

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A    +   R  H  AVV+     V VG  L+D Y K     DA R+F  NL+  NS+ W
Sbjct: 356 AIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIF-ANLAYRNSVPW 414

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES-EKWIERMK 330
            A+++ Y Q+G     L++F  +       D+ +F + L A  +A LA  S  K +    
Sbjct: 415 TAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKA--SANLASVSLGKQLHSSV 472

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           +R  L   +   + L+      G ++DA  +   MP + +   W AL+S  + +G A+  
Sbjct: 473 IRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP-DRNIVCWNALISAYSQNGDAEAT 531

Query: 391 SKMGKRLIDINPYDDS 406
                 +I+   Y DS
Sbjct: 532 FSSFADMIESGLYPDS 547



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 172/400 (43%), Gaps = 24/400 (6%)

Query: 19  RIVHARALKSSQADR--SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS- 75
           +I  AR L      R  S  N +++ Y KS  L  +  LF  + S N VSWT +I  +S 
Sbjct: 61  QIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQ 120

Query: 76  -NSPL-SLNIFLSMLRHPTLSFLPNQRTLASL---FKTCASLSHAFLFGLSLHSLSLKLS 130
            N P  + N++  M R       P+  T A+L   F    +L       L +HS  ++  
Sbjct: 121 NNQPKEAFNLYTEMCRSGVK---PDHITFATLLSGFDDTTTLKEV----LQIHSHIIRFG 173

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                   ++LV  Y +    D A ++F E+  +D V +  MI G+ +     ++L +F 
Sbjct: 174 FSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFM 233

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            MR+ D   + +  +  L  +     +   + IHG A+ +    ++ V   L+D Y K  
Sbjct: 234 QMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHD 293

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A+ +FDE +  L+ +++N ++ GYA  G      +LF  L+   F    + F  +L
Sbjct: 294 YIDLAKNLFDE-MPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATML 352

Query: 311 TALC---NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           +      N  +  ++           +++ G      L+    +  + EDA RI   + +
Sbjct: 353 SVAAIELNLSMGRQTHAQAVVTTAVSEVQVG----NALVDMYAKCEKFEDANRIFANLAY 408

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
             ++  W A++S     G  + A KM K +   N + D A
Sbjct: 409 R-NSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQA 447


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/547 (33%), Positives = 306/547 (55%), Gaps = 5/547 (0%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
           + D+ + N ++  + K  ++  + RLF+ +P+ N VSW  +IS + +S   +  F   + 
Sbjct: 164 EPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFIL 223

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                +    RT A++ +  A L   F  G  LHS ++K  L    F   AL+  YS+  
Sbjct: 224 MREEFYDCGPRTFATMIRASAGLEIIFP-GRQLHSCAIKAGLGQDIFVSCALIDMYSKCG 282

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           S ++A  VFDE+ ++ +V + ++I G+A +    ++L ++ +MR S V    +  S  +R
Sbjct: 283 SLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIR 342

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
             + LA++ + + +H   V +G   +V+  T L+D Y K G V DAR VFD  +S  N I
Sbjct: 343 ICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDR-MSCRNII 401

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +WNA++AGY   G     +++F  +   G  P+  +FLAVL+A   +GL     +  + M
Sbjct: 402 SWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSM 461

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
              +K++P   H+ C+I  +GR G L++A  +    PF+P A +W ALL    +HG  ++
Sbjct: 462 TRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLEL 521

Query: 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG 449
                ++L  + P   S Y+++ N+ +  G+  E A+V + +K + +R     SWIEV  
Sbjct: 522 GKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNN 581

Query: 450 KVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE-MLHNVGDREKREALWYHSE 508
           + H FL+GD+ H + E +  K+ ELM    +LGYVP     ML +V + E++  + YHSE
Sbjct: 582 QPHAFLSGDKHHVQIEKVVGKVDELMLNISKLGYVPEEQNFMLPDVDENEEKIRM-YHSE 640

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           KLA+A+GL++   +   L+IV++ RIC DCH   K I+ + +REIV+RD +R+H F +GS
Sbjct: 641 KLAIAYGLLNTLEK-TPLQIVQSHRICSDCHSVIKLIAMITKREIVIRDASRFHHFRDGS 699

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 700 CSCGDYW 706



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 111/249 (44%), Gaps = 14/249 (5%)

Query: 184 DSLSVFADMRSSD---VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
           D+L +F      D   VG + Y     + A   L ++   + +  + V +G + +  +  
Sbjct: 114 DALEMFEIFELEDGFHVGYSTY--DALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRN 171

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            ++  + K G++ DA R+FDE +   N+++W  +++GY   G+      LF L+    + 
Sbjct: 172 RVLLMHVKCGMMIDACRLFDE-MPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYD 230

Query: 301 PDEYSFLAVLTALCNAGLA-GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
               +F  ++ A  +AGL      + +    ++  L   +     LI    + G LEDA 
Sbjct: 231 CGPRTFATMIRA--SAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAH 288

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKA----DMASKMGKRLIDINPYDDSAYVIVANVL 415
            +   MP +     W ++++  A+HG +    D+  +M    + ++ +  S  + + + L
Sbjct: 289 CVFDEMP-DKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRL 347

Query: 416 SGVGRWDEV 424
           + V R  +V
Sbjct: 348 ASVARAKQV 356


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 191/566 (33%), Positives = 309/566 (54%), Gaps = 11/566 (1%)

Query: 15  STDPRIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           +T  R VHA   K   A    +   LI+ Y+K   +  +  LF+ +  P++V++ ALIS 
Sbjct: 237 TTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISG 296

Query: 74  HSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           +S + +   S+ +F  ++    +   P+  TL +L    +   H  L G  LH+  +K  
Sbjct: 297 YSINGMVGSSVELFKELV---GMGLRPSSSTLVALIPVHSPFGHEPLAG-CLHAHVVKAG 352

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           L       +AL   Y RF   D+A++ FD + E+ +  + AMI G+AQN     ++++F 
Sbjct: 353 LDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQ 412

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            M++ +V      +S AL A A+L A+   + +H       L+ NV V T LID Y K G
Sbjct: 413 QMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCG 472

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +++AR +FD ++   N ++WN M++GY   G  +  L+L+  +      P   +FL+VL
Sbjct: 473 SIAEARCIFD-SMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVL 531

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP- 369
            A  + GL  E       M   Y + PG+EH TC++  +GRAG+L++A  +    P    
Sbjct: 532 YACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAV 591

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
              +W ALL    +H   D+A    ++L ++ P +   YV+++N+ +   ++ E A VR+
Sbjct: 592 GPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQ 651

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
             K R++ K  G + IE+  + HVF+AGDR H +++ IY  L +L  +    GY P  + 
Sbjct: 652 EAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEA 711

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
            L++V + EK   +  HSEKLA+AFGL++  P G  +RI+KNLR+C DCH + K IS+V 
Sbjct: 712 ALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEP-GTEIRIIKNLRVCLDCHNATKIISKVT 770

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
           +R IVVRD +R+H F +G C+CGD W
Sbjct: 771 QRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 181/398 (45%), Gaps = 8/398 (2%)

Query: 11  PQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
           P   S   R +HA A+ S   AD  + + L   Y   +  + + ++F+ +PSP+ V W  
Sbjct: 135 PSAASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNT 194

Query: 70  LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
           L++  S S  +L  F+ M      S  P+  TLAS+    A +++  + G  +H+   K 
Sbjct: 195 LLAGLSGSE-ALEAFVRMAG--AGSVRPDSTTLASVLPAAAEVANTTM-GRCVHAFGEKC 250

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
            L       + L+  Y++    + A+ +FD +   D+V Y A+I G++ N  +  S+ +F
Sbjct: 251 GLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELF 310

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            ++    +  +   +   +   +          +H H V +GLD N  V T L   Y + 
Sbjct: 311 KELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRF 370

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
             +  ARR FD  +      +WNAM++GYAQ G     + LF  ++     P+  +  + 
Sbjct: 371 NDMDSARRAFDA-MPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSA 429

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L+A    G A    KW+ ++    KLE  +   T LI    + G + +A  I  +M    
Sbjct: 430 LSACAQLG-ALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMD-NK 487

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
           +   W  ++S   +HG+   A K+ K ++D + +  S+
Sbjct: 488 NVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSS 525



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 16/201 (7%)

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           AA    R +H  AV SG   +  V + L   Y      +DAR+VFD   S  +++ WN +
Sbjct: 137 AASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSP-DTVLWNTL 195

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           +AG +     S  LE F  +   G   PD  +  +VL A      A  +   + R    +
Sbjct: 196 LAGLS----GSEALEAFVRMAGAGSVRPDSTTLASVLPA-----AAEVANTTMGRCVHAF 246

Query: 334 KLEPGLEHY----TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
             + GL  +    T LIS   + G +E A  +   M   PD   + AL+S  +I+G    
Sbjct: 247 GEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRME-GPDLVTYNALISGYSINGMVGS 305

Query: 390 ASKMGKRLIDINPYDDSAYVI 410
           + ++ K L+ +     S+ ++
Sbjct: 306 SVELFKELVGMGLRPSSSTLV 326


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 182/558 (32%), Positives = 299/558 (53%), Gaps = 7/558 (1%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H   +K+   +D S    L++ Y+K    + +L  FN + S +IV+W +LI+ ++    
Sbjct: 452  IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511

Query: 80   SLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
              N  + M     LS + P+  T+  +   CA L+     G  +H L +KL         
Sbjct: 512  PYNA-IDMFYKLRLSAINPDAGTMVGVVPACALLND-LDQGTCIHGLIVKLGFESDCHVK 569

Query: 139  SALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  Y++  S  +A+ +F++    +D V +  +I  + QN    +++S F  MR  + 
Sbjct: 570  NALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENF 629

Query: 198  GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                      L AAA LAA  +    H   +  G   N +VG  LID Y K G +  + +
Sbjct: 630  HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 689

Query: 258  VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            +F+E +   ++++WNAM++GYA  G     + LF L++      D  SF++VL+A  +AG
Sbjct: 690  LFNE-MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAG 748

Query: 318  LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
            L  E  K    M  +Y ++P LEHY C++  +GRAG  ++       MP EPDA VW AL
Sbjct: 749  LVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGAL 808

Query: 378  LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
            L    +H    +       L+ + P + + +V+++++ +  GRW +  + R  M D  ++
Sbjct: 809  LGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK 868

Query: 438  KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
            K  G SW+E+K KVH F  GD+ H + E ++     L+E+ E++GYVP    +L NV + 
Sbjct: 869  KTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEE 928

Query: 498  EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            +K   L+ HSE+LA+ F L++  P G T++IVKNLR+C DCH + K+IS++  R I+VRD
Sbjct: 929  DKEMFLYSHSERLAITFALLN-TPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRD 987

Query: 558  VNRYHRFLNGSCTCGDLW 575
              R+H F +G C+C D W
Sbjct: 988  ATRFHHFEDGICSCNDYW 1005



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 196/426 (46%), Gaps = 25/426 (5%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HSNS 77
           +H  AL+    +D  +   L+  Y+K      + +LF  +   ++V+W+A+I+A   +  
Sbjct: 351 IHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410

Query: 78  PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           P  +L++F  M         PN+ TL S+   CA LS     G S+H  ++K  +     
Sbjct: 411 PEEALSLFQEMQNQ---KMKPNRVTLMSILPACADLS-LLKLGKSIHCFTVKADMDSDLS 466

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+ALV  Y++      A   F+ +  RD+V + ++I G+AQ     +++ +F  +R S 
Sbjct: 467 TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA 526

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      + G + A A L  ++Q   IHG  V  G + +  V   LID Y K G +  A 
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAE 586

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F++     + + WN ++A Y Q G     +  FH + +  F P+  +F++VL A   A
Sbjct: 587 FLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA--AA 644

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYT----CLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            LA   E       +   ++ G    T     LI    + G+L+ +E++   M  + D  
Sbjct: 645 YLAAFREGMAFHACI---IQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHK-DTV 700

Query: 373 VWRALLSFSAIHGKADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
            W A+LS  A+HG  D A    S M +  + I   D  ++V V +     G  +E  ++ 
Sbjct: 701 SWNAMLSGYAVHGHGDRAIALFSLMQESQVQI---DSVSFVSVLSACRHAGLVEEGRKIF 757

Query: 429 KVMKDR 434
             M D+
Sbjct: 758 HSMSDK 763



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 169/362 (46%), Gaps = 12/362 (3%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           +HA+ + S         +LI  YS  +    +  +F+  P+P+ + W ++I A++ S   
Sbjct: 51  IHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQY 110

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L ++  M+        P++ T   + K C   +     G+  H    +  L    F 
Sbjct: 111 NEALEMYYCMVEK---GLEPDKYTFTFVLKACTG-ALNLQEGVWFHGEIDRRGLERDVFI 166

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+ LV  YS+      A++VFD++ +RDVV + AMI G +Q+    +++  F  M+   V
Sbjct: 167 GAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGV 226

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             +   +        +L+ +E CR IHG+  V   D +  V  GLID Y K G V  ARR
Sbjct: 227 EPSSVSLLNLFPGICKLSNIELCRSIHGY--VFRRDFSSAVSNGLIDLYSKCGDVDVARR 284

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VFD+ +   + ++W  MMAGYA  G    VLELF  +++     ++ S ++   A     
Sbjct: 285 VFDQMVD-QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAET- 342

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  E  K I    ++ +++  +   T L+    + G  E A+++   +    D   W A+
Sbjct: 343 IDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR-DLVAWSAI 401

Query: 378 LS 379
           ++
Sbjct: 402 IA 403



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 176/378 (46%), Gaps = 18/378 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS--PL-SLNIFLSML 88
           D  I   L+  YSK   L  +  +F+ +P  ++V+W A+I+  S S  P  +++ F SM 
Sbjct: 163 DVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSM- 221

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               +   P+  +L +LF     LS+  L   S+H    +          + L+  YS+ 
Sbjct: 222 --QLVGVEPSSVSLLNLFPGICKLSNIEL-CRSIHGYVFRRDFSSA--VSNGLIDLYSKC 276

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              D A++VFD++ ++D V +G M+ G+A N   V+ L +F  M+  +V         A 
Sbjct: 277 GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAF 336

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            AAAE   +E+ + IHG A+   +D +++V T L+  Y K G    A+++F   L   + 
Sbjct: 337 LAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLF-WGLQGRDL 395

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           +AW+A++A   Q G     L LF  ++ +   P+  + +++L A  +  L  +  K I  
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL-KLGKSIHC 454

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA- 387
             V+  ++  L   T L+S   + G    A      M    D   W +L++  A  G   
Sbjct: 455 FTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSLINGYAQIGDPY 513

Query: 388 ---DMASKMGKRLIDINP 402
              DM  K+  RL  INP
Sbjct: 514 NAIDMFYKL--RLSAINP 529



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 11/248 (4%)

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           L++ YS F   D A+ VFD       + + +MI  + ++ +  ++L ++  M    +   
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
            Y  +  L+A      +++    HG     GL+R+V +G GL+D Y K G +  AR VFD
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC---NAG 317
           + +   + +AWNAM+AG +Q  D    ++ F  +++ G  P   S L +   +C   N  
Sbjct: 189 K-MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIE 247

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L      ++ R      +  G      LI    + G ++ A R+   M  + D   W  +
Sbjct: 248 LCRSIHGYVFRRDFSSAVSNG------LIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTM 300

Query: 378 LSFSAIHG 385
           ++  A +G
Sbjct: 301 MAGYAHNG 308


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 197/591 (33%), Positives = 314/591 (53%), Gaps = 39/591 (6%)

Query: 21  VHARALKSSQADRSI----YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +HAR LK+     S     + +   + + S+ L Y+  +F+    P+   W  +I   S 
Sbjct: 33  IHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSC 92

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           S       L   R    S   N  T  SL K C++LS AF     +H+   KL   +  +
Sbjct: 93  SDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLS-AFEETTQIHAQITKLGYENDVY 151

Query: 137 CGSALVHFYS-------------RFRSPDN------------------AKKVFDEIRERD 165
             ++L++ Y+             R   PD+                  A  +F ++ E++
Sbjct: 152 AVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKN 211

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
            + +  MI G+ Q     ++L +F +M++SDV      ++ AL A A+L A+EQ + IH 
Sbjct: 212 AISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHS 271

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           +   + +  + ++G  LID Y K G + +A  VF +N+   +  AW A+++GYA  G   
Sbjct: 272 YLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVF-KNIKKKSVQAWTALISGYAYHGHGR 330

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             +  F  ++  G  P+  +F AVLTA    GL  E +     M+  Y L+P +EHY C+
Sbjct: 331 EAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCI 390

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +  +GRAG L++A+R    MP +P+A +W ALL    IH   ++  ++G+ LI I+PY  
Sbjct: 391 VDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHG 450

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             YV  AN+ +   +WD+ AE R++MK++ V K  G S I ++G  H FLAGDR H   E
Sbjct: 451 GRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIE 510

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWY-HSEKLALAFGLVSGAPRGK 524
            I +K   +  + E  GYVP  +EML ++ D ++REA+ + HSEKLA+ +GL+   P G 
Sbjct: 511 KIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKP-GT 569

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            +RI+KNLR+C+DCH+  K IS++ +R+IV+RD  R+H F +G C+CGD W
Sbjct: 570 IIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 182/513 (35%), Positives = 293/513 (57%), Gaps = 13/513 (2%)

Query: 67  WTALISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           W  +I  +S   N   ++ +++SM+        PN  T   L  +CA LS +   G  +H
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAP--PNNFTFPFLLNSCARLS-SLEPGHEVH 58

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
           S  +K       F  +AL+H YS F + + A+ +FDE   RD+V Y  MI G+A+ ++  
Sbjct: 59  SHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPE 118

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL-DRNVIVGTGL 242
            +L +F +M++SD  + +      L A A L A +  + ++   + +G+ ++N I+   +
Sbjct: 119 SALCLFGEMQNSDEVTLV----AVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAV 174

Query: 243 IDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           +D Y K G +  A  +F     ++     +N+M+AG AQ G   T + +F  L   G  P
Sbjct: 175 MDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKP 234

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           DE +F+ VL A  ++GL  E +K  E M   Y ++P +EHY C++  +GR G LE+A  +
Sbjct: 235 DEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDL 294

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
              MPFE ++ +WRALLS    HG   +    G++L+++     + YV+++N+L+   +W
Sbjct: 295 VQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQW 354

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
           +E  +VRKVM+D  +RK  G S+IE+ G +H F+A D+ H + ++I   L ++    +  
Sbjct: 355 EEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSA 414

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           GYVP   +++ ++ + EK   + YHSEKLALAFGL+  +P   T+RIVKNLRIC DCH++
Sbjct: 415 GYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPT-DTIRIVKNLRICADCHKA 473

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           FK +S +  REI VRD  R+H F NGSC+C D 
Sbjct: 474 FKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 190/560 (33%), Positives = 302/560 (53%), Gaps = 8/560 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA+ +++  + D  +   L+ + SK + + Y+ R+F +  +PN+  +TALI    +S  
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            L       R    S LP+   +AS+ K C S   A   G  +HS +LKL          
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGS-QLALREGREVHSRALKLGFSSNRLVRL 176

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRE----RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            ++  Y +     +A++VF+E+ E    +D VC+ AMI GF +N     +L  F  M+  
Sbjct: 177 RIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGE 236

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           +V    + +   L A ++L A+E  R +H +     ++ N+ VG  LI+ Y + G + +A
Sbjct: 237 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 296

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           + VFDE +   + I +N M++G +  G     +ELF ++  R   P   +F+ VL A  +
Sbjct: 297 QTVFDE-MKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSH 355

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            GL     +    M   Y++EP +EHY C++  +GR GRLE+A  +   M   PD  +  
Sbjct: 356 GGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLG 415

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
            LLS   +H   ++  ++ K L D    D   YV++++V +  G+W E A+VR  MK+  
Sbjct: 416 TLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAG 475

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           ++KE G S IEV  ++H FL GD  H + E IY KL EL       GY P  + +L ++ 
Sbjct: 476 MQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIE 535

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           D EK  AL  HSE+LA+ +GL+S  P    +R++KNLR+C DCH + K I+++  R+IVV
Sbjct: 536 DGEKEWALAMHSERLAICYGLISTEP-CTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVV 594

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H F NG+C+CGD W
Sbjct: 595 RDRNRFHYFENGACSCGDYW 614



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 167/351 (47%), Gaps = 19/351 (5%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           +Q+ + SL +    ++      L +H+  ++      PF    L+   S+  + D A ++
Sbjct: 38  DQKQIISLLQRSRHINQV----LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI 93

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           F      +V  Y A+I GF  +   ++++ +++ M    +    Y ++  L+A     A+
Sbjct: 94  FQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLAL 153

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD---ENLSVLNSIAWNAM 274
            + R +H  A+  G   N +V   +++ YGK G + DARRVF+   E++   +++ W AM
Sbjct: 154 REGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAM 213

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + G+ +  + +  LE F  ++     P+E++ + VL+A    G A E  +W+     +++
Sbjct: 214 IDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG-ALEIGRWVHSYMRKFE 272

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM- 393
           +E  L     LI+   R G +++A+ +   M  + D   +  ++S  +++GK+  A ++ 
Sbjct: 273 IELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQAIELF 331

Query: 394 ----GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM-KDRRVRKE 439
               G+RL   N      +V V N  S  G  D   E+   M +D RV  +
Sbjct: 332 RVMVGRRLRPTN----VTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQ 378


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 193/561 (34%), Positives = 307/561 (54%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R V A A+K    ADR + ++LI  Y+    ++ +  +F+      +V W A+++A+  +
Sbjct: 140 RGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKN 199

Query: 78  PLSLNI---FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
              + +   F  ML    +    ++ TL S+   C  +  A L G  +     +  L   
Sbjct: 200 GDWMEVVEMFKGMLE---VGVAFDEVTLVSVVTACGRIGDAKL-GKWVAGHVDEEGLARN 255

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
           P   +AL+  Y++      A+++FD ++ RDVV + AMI G+ Q  +  ++L +F++M+ 
Sbjct: 256 PKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQL 315

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + V      +   L A A L A+E  + +H +     L    I+GT L+D Y K G + D
Sbjct: 316 ARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDD 375

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A   F E++ V NS  W A++ G A  G     LELF  +   G  P + +F+ VL A  
Sbjct: 376 AVEAF-ESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACS 434

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++ L  E  +  + M   Y ++P +EHY C++  +GRAG +++A +    MP EP+A +W
Sbjct: 435 HSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIW 494

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           RALLS  A+H    +  +  K++I +NP     YV+++N+ +  G+W + A VRK MKDR
Sbjct: 495 RALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDR 554

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            + K  G S IE+ G V  F A D  H    +IY K+ E++   +  GYVP   ++   V
Sbjct: 555 GIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEV 614

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            +REK  ++ +HSEKLA+AFGL+   P G T+R+ KNLR+C DCH + K IS+V +REIV
Sbjct: 615 EEREKEVSVSHHSEKLAIAFGLMKLDP-GATIRLSKNLRVCADCHSATKLISKVYDREIV 673

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD N +H F +G+C+C D W
Sbjct: 674 VRDRNIFHHFKDGTCSCNDYW 694



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 192/408 (47%), Gaps = 16/408 (3%)

Query: 7   QQPQPQNTSTDPRIVHARALKSSQ---ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           + P   + S  P++ HA  +KS +   + +S ++ L    +   LL Y++ LF   P P 
Sbjct: 22  RAPLRADPSYLPQL-HAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPP 80

Query: 64  IVS--WTALISA--HSNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           + +  +  L+ A  H+  P  +L++F+ ML H   +   +Q T A   K+C+ +  A   
Sbjct: 81  LSTPCYNVLMRAFLHAGHPEDALHLFIEML-HAASACPADQHTAACALKSCSRMC-ALDV 138

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  + + ++K  L    F  S+L+H Y+       A+ VFD   E  VV + A++  + +
Sbjct: 139 GRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLK 198

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N   ++ + +F  M    V      +   + A   +   +  + + GH    GL RN  +
Sbjct: 199 NGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKL 258

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            T L+D Y K G +  ARR+FD  +   + +AW+AM++GY Q       L LF  +++  
Sbjct: 259 VTALMDMYAKCGEIGKARRLFD-GMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLAR 317

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
             P++ + ++VL+A C    A E+ KW+     R +L       T L+    + G ++DA
Sbjct: 318 VEPNDVTMVSVLSA-CAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDA 376

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM--GKRLIDINPYD 404
                +MP + ++  W AL+   A +G+   A ++    R   I P D
Sbjct: 377 VEAFESMPVK-NSWTWTALIKGMATNGRGREALELFSSMREAGIEPTD 423


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 184/556 (33%), Positives = 305/556 (54%), Gaps = 7/556 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH   +KS    D S+ N+LI  YS    L  +  +F+ + S ++VSWTA+I++  + 
Sbjct: 319 RGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSH 378

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L      +         LP++ TL S+   CA + H  L G+ LH +++K  L      
Sbjct: 379 KLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDL-GIRLHEIAIKTGLVSHVIV 437

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  YS+ +  DNA +VF  I  ++VV + ++I+G   N+R  ++L  F  M+ S  
Sbjct: 438 SNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESMK 497

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +++  +S  L A A + A+ + + IH HA+ +G+  +  +   ++D Y + G    A  
Sbjct: 498 PNSVTLIS-VLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALN 556

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            F+      +  AWN ++ GYAQQG     +ELF  +      PDE +F+++L A   +G
Sbjct: 557 QFNSQKK--DVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSG 614

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  E  ++   MK +Y L P L+HY C++  +GRAG+L+DA      MP  PDAA+W AL
Sbjct: 615 MVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGAL 674

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L+   IH   ++     KR+ + +      Y+++ N+ +G G WD+V++VR +M++R + 
Sbjct: 675 LNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLS 734

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
            + G SW+E+KGKVH FL+GD  H ++++I   L     + +  G+  +       + + 
Sbjct: 735 ADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEI-ES 793

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            + +    HSE+ A+AFGL++ AP G  + + KNL +C  CH   K+IS +V REI VRD
Sbjct: 794 SRADIFCGHSERQAIAFGLINTAP-GMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRD 852

Query: 558 VNRYHRFLNGSCTCGD 573
           V  YH F +G C+CGD
Sbjct: 853 VEEYHHFKDGVCSCGD 868



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 8/284 (2%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           N L++ + +   L  +  +F  +   ++ SW  L+  ++ +     +LN++  ML     
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRML---WA 192

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
              PN  T  S+ KTCA +S     G  +H+  ++         G+AL+  Y +     N
Sbjct: 193 EIRPNVYTFPSVLKTCAGVSD-IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+ +FD++ +RD + + AMI G+ +N   ++ L +F+ MR   V   +  ++    A   
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           L      R +HG+ V S    ++ +   LI  Y   G + +A  VF   +   + ++W A
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSR-MESKDVVSWTA 370

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           M+A           +E + ++E+ G  PDE + ++VL+A    G
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIG 414



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 184/420 (43%), Gaps = 16/420 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA  ++   ++D  + N LIT Y K   +S +  LF+ +P  + +SW A+IS +  +  
Sbjct: 220 IHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGG 279

Query: 80  SLN--IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L      SM+R   LS  P+  T+ ++   C  L +  L G  +H   +K         
Sbjct: 280 GLEGLELFSMMRE--LSVDPDLITMTTVASACELLDNERL-GRGVHGYVVKSEFGGDISM 336

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  YS     + A+ VF  +  +DVV + AMI     +     ++  +  M    +
Sbjct: 337 NNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGI 396

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 +   L A A +  ++    +H  A+ +GL  +VIV   LID Y K   V +A  
Sbjct: 397 LPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALE 456

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF  N+S  N ++W +++ G          L  F  ++     P+  + ++VL+A    G
Sbjct: 457 VF-RNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIG 514

Query: 318 LAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            A    K I    +R  +  G + +    ++    R GR   A  +      + D   W 
Sbjct: 515 -ALMRGKEIHAHALRTGV--GFDGFLPNAILDMYVRCGRKVPA--LNQFNSQKKDVTAWN 569

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPY-DDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            LL+  A  G+A +A ++  +++++  + D+  ++ +    S  G   E  E   +MK++
Sbjct: 570 ILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNK 629



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 9/245 (3%)

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  + RF +  +A  VF ++ ERDV  +  ++ G+A+     ++L+++  M  +++
Sbjct: 135 GNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEI 194

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
              +Y     L+  A ++ + + + IH H +  G + +V VG  LI  Y K G +S+AR 
Sbjct: 195 RPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARM 254

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD+ +   + I+WNAM++GY + G     LELF ++      PD    L  +T + +A 
Sbjct: 255 LFDK-MPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPD----LITMTTVASAC 309

Query: 318 LAGESEKW---IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
              ++E+    +    V+ +    +     LI      GRLE+AE +   M    D   W
Sbjct: 310 ELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRME-SKDVVSW 368

Query: 375 RALLS 379
            A+++
Sbjct: 369 TAMIA 373


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 184/561 (32%), Positives = 310/561 (55%), Gaps = 9/561 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           R +HA  L+ S Q    I N+L+T YSK N +  + R+F  +P  ++VS   L   ++  
Sbjct: 368 RTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAAL 427

Query: 76  -NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +   ++ +F S +R   +   PN  T+ +L  TC SL     +G+ LH+   +  L   
Sbjct: 428 EDVANAMRVF-SWMRGTGIK--PNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSD 484

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +  ++L+  Y+     +++  +F  I  + V+ + A+I    ++ R  +++ +F D + 
Sbjct: 485 EYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQH 544

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           +      +C++  L ++A LA++E+   +HG +V +GLD +  V    +D YGK G +  
Sbjct: 545 AGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDC 604

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
             +   +  +   +  WN +++GYA+ G      + F  +   G  PD  +F+A+L+A  
Sbjct: 605 MLKTLPDP-AHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACS 663

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AGL  +   +   M   + + PG++H  C++  +GR G+  +AE+    MP  P+  +W
Sbjct: 664 HAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIW 723

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           R+LLS S  H   D+  K  K L++++P+DDSAYV+++N+ +   RW +V ++R  MK  
Sbjct: 724 RSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTI 783

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           ++ K    SW+++K +V  F  GDR H   E IY KL E++ +   +GYV      LH+ 
Sbjct: 784 KLNKRPACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEILLKLREVGYVADTSSALHDT 843

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + +K   LW HSEKLALA+GL+   P G T+RI KNLR+C DCH  FK +S V  REIV
Sbjct: 844 DEEQKEHNLWNHSEKLALAYGLLV-VPEGSTIRIFKNLRVCADCHLVFKLVSMVFHREIV 902

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD  R+H+F +GSC+C D W
Sbjct: 903 LRDPYRFHQFKHGSCSCSDFW 923



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 167/367 (45%), Gaps = 16/367 (4%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIF--LSMLRHP 91
           S+ N+LIT +     +  + RLF+ +   + +SW A+IS +S+  +    F  LS +RH 
Sbjct: 181 SVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHG 240

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            +   P+  TL SL   CAS S     G  +HSL +   LH      +ALV+ YS     
Sbjct: 241 EVK--PDVTTLCSLVSVCAS-SDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKL 297

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG-STMYCVSGALRA 210
           D A+ +F  +  RDV+ +  MI  + Q++  V++L     +  +D G       S AL A
Sbjct: 298 DEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGA 357

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            +   A+   R IH   +   L   +++G  L+  Y K   + D  RVF E++   + ++
Sbjct: 358 CSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVF-ESMPCYDVVS 416

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
            N +  GYA   D +  + +F  +   G  P+ Y  +  L   C +   G+   +   + 
Sbjct: 417 CNVLTGGYAALEDVANAMRVFSWMRGTGIKPN-YITMINLQGTCKS--LGDLHSYGMPLH 473

Query: 331 VRYKLEPGL---EHYT-CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             Y  + GL   E+ T  LI+     G LE +  I  +         W A+++ +  HG+
Sbjct: 474 A-YVTQTGLLSDEYITNSLITMYATCGDLESSTGI-FSRINNKSVISWNAIIAANVRHGR 531

Query: 387 ADMASKM 393
            + A K+
Sbjct: 532 GEEAIKL 538



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 155/327 (47%), Gaps = 8/327 (2%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
           Y    L+  + RLF  +P  N+VSWTA++ A S++       ++  R      + N   L
Sbjct: 89  YGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANAL 148

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           A++   C +L    + GL + +  +   L       ++L+  +   R   +A+++FD + 
Sbjct: 149 ATVVSLCGALEDE-VAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRME 207

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS--TMYCVSGALRAAAELAAMEQC 220
           ERD + + AMI  ++          V +DMR  +V    T  C   ++ A+++L A+   
Sbjct: 208 ERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGS- 266

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
             IH   V SGL  +V +   L++ Y  AG + +A  +F  N+S  + I+WN M++ Y Q
Sbjct: 267 -GIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLF-RNMSRRDVISWNTMISSYVQ 324

Query: 281 QGDQSTVLE-LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
                  LE L  LL+     P+  +F + L A C++  A  + + I  M ++  L+  L
Sbjct: 325 SNSCVEALETLGQLLQTDEGPPNSMTFSSALGA-CSSPEALMNGRTIHAMILQRSLQNVL 383

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMP 366
                L++   +   +ED ER+  +MP
Sbjct: 384 LIGNSLLTMYSKCNSMEDTERVFESMP 410



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 102 LASLFKTCA--SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
           LASL   C           G ++H+L+ +  L    + G+AL+H Y       NA+++F 
Sbjct: 44  LASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFW 103

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
           E+ +R+VV + A++V  + N  + ++L  +  MR   V     C + AL     L    +
Sbjct: 104 EMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGV----MCNANALATVVSLCGALE 159

Query: 220 CRV----IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
             V    +  H VVSGL  +V V   LI  +G    V DA R+FD  +   + I+WNAM+
Sbjct: 160 DEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDR-MEERDRISWNAMI 218

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           + Y+ +   S    +   +      PD  +  ++++   ++ L       I  + V   L
Sbjct: 219 SMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSG-IHSLCVSSGL 277

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
              +     L++    AG+L++AE +   M    D   W  ++S
Sbjct: 278 HCSVPLINALVNMYSTAGKLDEAESLFRNMS-RRDVISWNTMIS 320


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 306/560 (54%), Gaps = 12/560 (2%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+K+   ++  I N LI  YSK   ++Y+  +F+ + + +++SWT +I+A++ +  
Sbjct: 235 IHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNC 294

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL---SHAFLFGLSLHSLSLKLSLHDKPF 136
                  + +  T     +   + S    C+ L   SHA      +H  +LK  L D   
Sbjct: 295 HTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHA----KEVHGYTLKRGLSDLMM 350

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             + ++  Y+   + + A ++F+ I+ +DVV + +MI  +  N    ++L VF  M+ + 
Sbjct: 351 -QNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETS 409

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      +   L AAA L+A+ + + IHG     G          L+D Y   G + +A 
Sbjct: 410 VEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAY 469

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VF    S  + + W  M+  Y   G     +ELF ++E +   PD  +FLA+L A  ++
Sbjct: 470 KVFICTRSK-SLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHS 528

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E ++ +E MK +Y+LEP  EHY CL+  +GRA  LE+A     +M  EP A VW A
Sbjct: 529 GLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCA 588

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            L    IH    +     ++L+D++P    +YV+++NV +  GRW +V EVR  MK   +
Sbjct: 589 FLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGL 648

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL-GYVPVWDEMLHNVG 495
           +K  G SWIEV  KVH FL  D+ H  +  IY KLA++ E+ E+  GYVP    +LHNVG
Sbjct: 649 KKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVG 708

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
             EK + L+ HSE+LA+A+GL+S    G  +RI KNLR+C DCH   K +S+  ERE++V
Sbjct: 709 KEEKVQMLYGHSERLAIAYGLMS-TSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIV 767

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD +R+H F +G C+CGD W
Sbjct: 768 RDASRFHHFEDGVCSCGDFW 787



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 173/363 (47%), Gaps = 18/363 (4%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPN-IVSWTALISAHS---NSPLSLNIFLSMLRH 90
           + N+L++ Y+K N +  + +LF+ +   N +VSW ++ISA+S       +L +F  M + 
Sbjct: 47  VANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKA 106

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
              +   N  TL +  + C   S   L G+ +H+  LK +     +  +ALV  + RF  
Sbjct: 107 GVGA---NTYTLVAALQACEDSSFKKL-GMEIHAAILKSNQVLDVYVANALVAMHVRFGK 162

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
              A ++FDE+ E+D + + +MI GF QN    ++L  F  ++ +++      +   L A
Sbjct: 163 MSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAA 222

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
           +  L  +   + IH +A+ + LD N+ +G  LID Y K   V+ A  VFD+ ++  + I+
Sbjct: 223 SGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINK-DLIS 281

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W  ++A YAQ    +  L+L   ++ +G   D     + L A C+        K +    
Sbjct: 282 WTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLA-CSGLRCLSHAKEVH--- 337

Query: 331 VRYKLEPGLEHY---TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
             Y L+ GL        +I      G +  A R+  ++  + D   W +++S    +G A
Sbjct: 338 -GYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCK-DVVSWTSMISCYVHNGLA 395

Query: 388 DMA 390
           + A
Sbjct: 396 NEA 398



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 177/377 (46%), Gaps = 12/377 (3%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA  LKS+Q  D  + N L+  + +   +SY+ R+F+ +   + ++W ++I+  + + L
Sbjct: 134 IHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGL 193

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L  F  +      +  P++ +L S+      L +  L G  +H+ ++K  L     
Sbjct: 194 YNEALQFFCGL---QDANLKPDEVSLISILAASGRLGY-LLNGKEIHAYAMKNWLDSNLR 249

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+ L+  YS+      A  VFD++  +D++ +  +I  +AQN+   ++L +   +++  
Sbjct: 250 IGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKG 309

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      +   L A + L  +   + +HG+ +  GL  ++++   +ID Y   G ++ A 
Sbjct: 310 MDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYAT 368

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           R+F E++   + ++W +M++ Y   G  +  L +F+L++     PD  + +++L+A  + 
Sbjct: 369 RMF-ESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASL 427

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               +  K I     R            L+      G LE+A ++ +         +W  
Sbjct: 428 SALNKG-KEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTR-SKSLVLWTT 485

Query: 377 LLSFSAIHGKADMASKM 393
           +++   +HG+   A ++
Sbjct: 486 MINAYGMHGRGKAAVEL 502



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 2/195 (1%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFA 177
           G  +H L +K       F  ++LV  Y++      A+K+FD + ER DVV + ++I  ++
Sbjct: 29  GAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYS 88

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
            N + +++L +F +M+ + VG+  Y +  AL+A  + +  +    IH   + S    +V 
Sbjct: 89  LNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVY 148

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           V   L+  + + G +S A R+FDE L   ++I WN+M+AG+ Q G  +  L+ F  L+  
Sbjct: 149 VANALVAMHVRFGKMSYAARIFDE-LDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDA 207

Query: 298 GFAPDEYSFLAVLTA 312
              PDE S +++L A
Sbjct: 208 NLKPDEVSLISILAA 222



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 11/223 (4%)

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T  CV   L+A   +  + +   IHG  +  G D  V V   L+  Y K   +  AR++F
Sbjct: 12  TFPCV---LKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D      + ++WN++++ Y+  G     L LF  ++  G   + Y+ +A L A  ++   
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSF- 127

Query: 320 GESEKWIERMKVRYKLEPGLEHYT--CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              +  +E      K    L+ Y    L++   R G++  A RI   +  E D   W ++
Sbjct: 128 --KKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELD-EKDNITWNSM 184

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
           ++    +G  + A +    L D N   D   +I  ++L+  GR
Sbjct: 185 IAGFTQNGLYNEALQFFCGLQDANLKPDEVSLI--SILAASGR 225


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 191/543 (35%), Positives = 293/543 (53%), Gaps = 41/543 (7%)

Query: 70  LISAHSNSPLS----LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL 125
           +I AH+  P S    + IFLSM+R     FLPN+ T   +FK C +     L G  +   
Sbjct: 1   MIKAHAVIPTSSHNSMRIFLSMVR--VSGFLPNRYTFVFVFKACGN-GLGVLEGEQIRVH 57

Query: 126 SLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV---------------------------- 157
           ++K+ L    F  +A++  Y+ +   D A++V                            
Sbjct: 58  AIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRA 117

Query: 158 ---FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
              FDE+ ERDVV +  +I G+ Q     ++L +F +M  +      + ++ AL A A L
Sbjct: 118 KEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANL 177

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF-DENLSVLNSIAWNA 273
            A++Q R IH +   S +  N  +   L+D Y K G +  A +VF DE    L    WNA
Sbjct: 178 VALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNA 237

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           M+ GYA  G     ++LF  +++   +P++ +F+A+L A  +  L  E   + + M   Y
Sbjct: 238 MIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSY 297

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            +EP +EHY C++  +GR+G L++AE     MP  PDA +W ALL    IH   +   ++
Sbjct: 298 GIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRI 357

Query: 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHV 453
           GK + +++      +V++AN+ S  G+WDE   VR+ ++    +K  G S IE+ G  H 
Sbjct: 358 GKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQ 417

Query: 454 FLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE-ALWYHSEKLAL 512
           FL GDR H +T+ +Y  L E+  + +  GYVP + E+L ++ D E +E AL  HSEKLA+
Sbjct: 418 FLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAI 477

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AFGL++  P G  +RIVKNLR+C DCHE+ K+IS+V +REI+VRD  RYH F +G C+C 
Sbjct: 478 AFGLIN-TPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCK 536

Query: 573 DLW 575
           D W
Sbjct: 537 DYW 539



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 12/262 (4%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR +     D+ +Y  N +I  Y  S  +  +  +F+ +   ++VSWT +I+ +      
Sbjct: 86  ARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCF 145

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L++F  ML+       PN+ TLAS    CA+L  A   G  +H    K  +      
Sbjct: 146 KEALDLFHEMLQTGP---PPNEFTLASALAACANLV-ALDQGRWIHVYIDKSEIKMNERL 201

Query: 138 GSALVHFYSRFRSPDNAKKVF-DEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            ++L+  Y++    D A KVF DE   +  V  + AMI G+A + +  +++ +F  M+  
Sbjct: 202 LASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVE 261

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            V          L A +    +E+ R      A   G++  +     ++D  G++G++ +
Sbjct: 262 KVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKE 321

Query: 255 ARRVFDENLSVLNSIAWNAMMA 276
           A           ++  W A++ 
Sbjct: 322 AEETVFNMPMAPDATIWGALLG 343


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 188/551 (34%), Positives = 295/551 (53%), Gaps = 15/551 (2%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLS 86
           K  + D   YN ++  Y +S  +  +L  FN +P  +I SW  LIS  + +      F  
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAF-- 187

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS--LHSLSLKLSLHDKPFCGSALVHF 144
                  S +P +  ++        + H  L        ++ +K  + +     +A++  
Sbjct: 188 ----DLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVE-----TAMLTG 238

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           Y +F   + A+++F  +  +++V + +MI G+ +N R  D L VF  M  S V      +
Sbjct: 239 YMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSL 298

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           S  L   + L+A+   R +H     S L ++    T LI  Y K G +  A ++F E + 
Sbjct: 299 SSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLE-MP 357

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             + I+WNAM++GYAQ G     L LF  +      PD  +F+AV+ A  +AG      +
Sbjct: 358 RKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ 417

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
           + + MK  + +E    HYTC+I  +GRAGRL++A  +   MPF+P AA++  LL    IH
Sbjct: 418 YFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIH 477

Query: 385 GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSW 444
              D+A    + L++++P   + YV +AN+ +   +WD+VA+VRK+MK+  V K  G SW
Sbjct: 478 KNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSW 537

Query: 445 IEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALW 504
           IE+K   H F + DR+H     I+ KL EL  + +  GYVP  +  LH+V +  K + L 
Sbjct: 538 IEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLL 597

Query: 505 YHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF 564
           +HSEKLA+AFGL+  AP G  +R+ KNLR+C DCH + K+IS + +REI+VRD  R+H F
Sbjct: 598 WHSEKLAIAFGLMKTAP-GTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHF 656

Query: 565 LNGSCTCGDLW 575
            NG C+CGD W
Sbjct: 657 RNGFCSCGDYW 667



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 18/204 (8%)

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ-QGDQSTVLELFHL 293
           +V+     I  + +A  +  AR VF E +SV  ++ WN M++GY +  G      ELF  
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVF-EKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           +      PD  S+  +L     +     +  +  +M V+      +  +  LIS   + G
Sbjct: 131 IP----EPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVK-----DIASWNTLISGFAQNG 181

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           +++ A  +   MP E +   W A++S    HG  + A ++ K +         + V+   
Sbjct: 182 QMQKAFDLFSVMP-EKNGVSWSAMISGYVEHGDLEAAEELYKNV------GMKSVVVETA 234

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVR 437
           +L+G  ++ +V    ++ +   V+
Sbjct: 235 MLTGYMKFGKVELAERIFQRMAVK 258


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 184/556 (33%), Positives = 305/556 (54%), Gaps = 7/556 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH   +KS    D S+ N+LI  YS    L  +  +F+ + S ++VSWTA+I++  + 
Sbjct: 319 RGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSH 378

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L      +         LP++ TL S+   CA + H  L G+ LH +++K  L      
Sbjct: 379 KLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDL-GIRLHEIAIKTGLVSHVIV 437

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  YS+ +  DNA +VF  I  ++VV + ++I+G   N+R  ++L  F  M+ S  
Sbjct: 438 SNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESMK 497

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +++  +S  L A A + A+ + + IH HA+ +G+  +  +   ++D Y + G    A  
Sbjct: 498 PNSVTLIS-VLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALN 556

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            F+      +  AWN ++ GYAQQG     +ELF  +      PDE +F+++L A   +G
Sbjct: 557 QFNSQKK--DVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSG 614

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  E  ++   MK +Y L P L+HY C++  +GRAG+L+DA      MP  PDAA+W AL
Sbjct: 615 MVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGAL 674

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L+   IH   ++     KR+ + +      Y+++ N+ +G G WD+V++VR +M++R + 
Sbjct: 675 LNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLS 734

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
            + G SW+E+KGKVH FL+GD  H ++++I   L     + +  G+  +       + + 
Sbjct: 735 ADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEI-ES 793

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            + +    HSE+ A+AFGL++ AP G  + + KNL +C  CH   K+IS +V REI VRD
Sbjct: 794 SRADIFCGHSERQAIAFGLINTAP-GMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRD 852

Query: 558 VNRYHRFLNGSCTCGD 573
           V  YH F +G C+CGD
Sbjct: 853 VEEYHHFKDGVCSCGD 868



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 132/284 (46%), Gaps = 8/284 (2%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           N L++ + +   L  +  +F  +   ++ SW  L+  ++ +     +LN++  ML     
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRML---WA 192

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
              PN  T  S+ KTCA +S     G  +H+  ++         G+AL+  Y +     N
Sbjct: 193 EIRPNVYTFPSVLKTCAGVSD-IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+ +FD++ +RD + + AMI G+ +N   ++ L +F+ MR   V   +  ++    A   
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           L      R +HG+ V S    ++ +   LI  Y   G + +A  VF   +   + ++W A
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSR-MESKDVVSWTA 370

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           M+A           +E + ++E+ G  PDE + ++VL+A    G
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIG 414



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 184/420 (43%), Gaps = 16/420 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA  ++   ++D  + N LIT Y K   +S +  LF+ +P  + +SW A+IS +  +  
Sbjct: 220 IHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGG 279

Query: 80  SLN--IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L      SM+R   LS  P+  T+ ++   C  L +  L G  +H   +K         
Sbjct: 280 GLEGLELFSMMRE--LSVDPDLITMTTVASACELLDNERL-GRGVHGYVVKSEFGGDISM 336

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  YS     + A+ VF  +  +DVV + AMI     +     ++  +  M    +
Sbjct: 337 NNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGI 396

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 +   L A A +  ++    +H  A+ +GL  +VIV   LID Y K   V +A  
Sbjct: 397 LPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALE 456

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF  N+S  N ++W +++ G          L  F  ++     P+  + ++VL+A    G
Sbjct: 457 VF-RNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIG 514

Query: 318 LAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            A    K I    +R  +  G + +    ++    R GR   A  +      + D   W 
Sbjct: 515 -ALMRGKEIHAHALRTGV--GFDGFLPNAILDMYVRCGRKVPA--LNQFNSQKKDVTAWN 569

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPY-DDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            LL+  A  G+A +A ++  +++++  + D+  ++ +    S  G   E  E   +MK++
Sbjct: 570 ILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNK 629



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 9/245 (3%)

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  + RF +  +A  VF ++ ERDV  +  ++ G+A+     ++L+++  M  +++
Sbjct: 135 GNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEI 194

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
              +Y     L+  A ++ + + + IH H +  G + +V VG  LI  Y K G +S+AR 
Sbjct: 195 RPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARM 254

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD+ +   + I+WNAM++GY + G     LELF ++      PD    L  +T + +A 
Sbjct: 255 LFDK-MPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPD----LITMTTVASAC 309

Query: 318 LAGESEKW---IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
              ++E+    +    V+ +    +     LI      GRLE+AE +   M    D   W
Sbjct: 310 ELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRME-SKDVVSW 368

Query: 375 RALLS 379
            A+++
Sbjct: 369 TAMIA 373


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 205/602 (34%), Positives = 314/602 (52%), Gaps = 49/602 (8%)

Query: 16  TDPRIVHARALKSSQADRSIY--NNLITNYSKSNLL--SYSLRLFNHIPSPNIVSWTALI 71
           T  + VHAR L +   D+S Y    LI   +K N+    Y L +FN +  PN   + ALI
Sbjct: 60  TQIKQVHARILLNG-LDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALI 118

Query: 72  SAH--SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL------------ 117
             +           F S++R   +  +P   T  +LFK C +     L            
Sbjct: 119 RGYLIEERLKESTEFYSLMRKEGV--VPVSFTFTALFKACGAKMDVGLGRQIHGQTILVG 176

Query: 118 -FGLSLHSLSLKLSLHDKPFCG--------------------SALVHFYSRFRSPDNAKK 156
            FG  LH  +  + ++ K  CG                    + L+  Y +  + ++A +
Sbjct: 177 GFGEDLHVGNSMIDMYIK--CGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGE 234

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           +FD +  +D+V +  M+ GFAQN++  +++  F  M+   V +    + G + A A+L A
Sbjct: 235 LFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGA 294

Query: 217 MEQCRVIHGHAVVS--GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            +    I   A  S  G   +V+VG+ LID Y K G V DA RVF + +   N  ++++M
Sbjct: 295 AKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVF-QGMKERNVYSYSSM 353

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + G+A  G     ++LF  +      P+  +F+ VLTA  +AG+  +  +  E M+  Y 
Sbjct: 354 ILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYG 413

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           ++P  +HYTC++  +GRAGRL++A  +   MP EP   VW ALL    IH   D+A+   
Sbjct: 414 IKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAA 473

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV-KGKVHV 453
             L ++ PY    Y+++AN+ +  GRW++V+ VRK+M+ R +RK    SWIE  KG VH 
Sbjct: 474 NHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHE 533

Query: 454 FLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALA 513
           F +GD  H R+ +I   L +L++  E  GY P    + ++V D +KR  L  HSEKLALA
Sbjct: 534 FFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALA 593

Query: 514 FGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
           FGL+S  P G  +RIVKNLRIC DCH      S++  REI+VRD+ R+H F +G C+CG+
Sbjct: 594 FGLISTIP-GSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGN 652

Query: 574 LW 575
            W
Sbjct: 653 FW 654


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 186/549 (33%), Positives = 305/549 (55%), Gaps = 10/549 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLS 86
           + D+ + N ++  + K  ++  + RLF+ +P  N+VSW  +IS      +   +  +FL+
Sbjct: 7   EFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLN 66

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M    + +      T A + +  A L      G  LH+ +LK+ + D  F   AL+  YS
Sbjct: 67  MWEEFSDA---GSFTFAVMIRASAGLE-LISIGRQLHACTLKMGIGDDIFVSCALIDMYS 122

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +  S ++A+ VF+E+ E+  V +  +I G+A +    ++L ++ +MR S V    +  S 
Sbjct: 123 KCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSM 182

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            +R  A LA++E  +  H   +  G   +++  T L+D Y K G + DAR VFD+ ++  
Sbjct: 183 IVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDK-MASK 241

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N I+WNA++ GY   G  S  +ELF  +      P+  +FLAVL+A  ++GL+    +  
Sbjct: 242 NVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIF 301

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           + M    +++P   HY C+I  MGR G L++A  +    PF+P A +W ALL+   ++  
Sbjct: 302 QSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNEN 361

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++     ++L  + P   + Y+++ N+ +  G   E A+V   +K + +R     SWIE
Sbjct: 362 FELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIE 421

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           VK + HVFL+GD  H + ++IY K+ +LM E  + GYVP    +L +V ++E+R  L YH
Sbjct: 422 VKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVDEQEERVRL-YH 480

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+AFGL+S  P    L+IV+  RIC DCHE+ K I+RV  REIV+RD  R+H F +
Sbjct: 481 SEKLAIAFGLIS-TPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFKH 539

Query: 567 GSCTCGDLW 575
           G C+C D W
Sbjct: 540 GHCSCEDYW 548


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 177/545 (32%), Positives = 294/545 (53%), Gaps = 9/545 (1%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
           ++ N L+  Y +      +  +F+ +  PN++SW ++I  +        +L +F +M + 
Sbjct: 398 TMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQ 457

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
                 P++    ++   C   SH     L +H    +  L   P   ++LV+ Y++   
Sbjct: 458 ---GIQPDRVNFMTILGACTIGSHGRTRKL-VHQCVEESGLGGSPLVQTSLVNMYAKAGE 513

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            D A+ +  E+ E+ +  +  +I G+A + R  ++L  +  ++   +          L A
Sbjct: 514 LDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNA 573

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
                ++ + ++IH +AV  GLD +VIV   L + Y K G + +ARR+FD ++ + ++++
Sbjct: 574 CTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFD-SMPIRSAVS 632

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WN M+  YAQ G+   VL+L   +E  G   +  +F++VL++  +AGL  E  ++   + 
Sbjct: 633 WNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLG 692

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
               +E   EHY CL+  +GRAG+L++AE+    MP EP    W +LL    +    D  
Sbjct: 693 HDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRG 752

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
                +L++++P + SA V+++N+ S  G W   A++R+ M  RRV+K  G S I+VK K
Sbjct: 753 KLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNK 812

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
           VH F   D  H R  +IY K+ EL       GYVP    +LH+V + +K   L YHSEKL
Sbjct: 813 VHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKL 872

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AFGL+S  P   +L I KNLR+C DCH + K+IS++  REIVVRD +R+H F +GSC+
Sbjct: 873 AIAFGLIS-TPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCS 931

Query: 571 CGDLW 575
           C D W
Sbjct: 932 CKDYW 936



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 193/415 (46%), Gaps = 18/415 (4%)

Query: 13  NTSTDP------RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV 65
           N+  DP      + +H+   +S  + D  +   L+  Y+K   L+ + ++F+ +P  ++ 
Sbjct: 168 NSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVG 227

Query: 66  SWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA---SLSHAFLFGLSL 122
           +W ++ISA+S S  S   F    R        ++ T  S+   C    +L H      S+
Sbjct: 228 TWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESI 287

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
              S +L L    F G+AL+  Y+R RSP++A +VF  +++ +++ + A+I  FA +   
Sbjct: 288 SETSFELDL----FVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHC 343

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
            ++L  F  M+   +          L      + +E+   IH      GLD    +   L
Sbjct: 344 GEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNAL 403

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           ++ YG+     DAR VFD+ L + N I+WN+M+  Y Q       L+LF  ++ +G  PD
Sbjct: 404 VNVYGRCESPDDARTVFDQ-LELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPD 462

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
             +F+ +L A C  G  G + K + +      L       T L++   +AG L+ AE I 
Sbjct: 463 RVNFMTILGA-CTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVIL 521

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIVANVLS 416
             M  E     W  L++  A+HG++  A +  ++L ++  P D   ++ V N  +
Sbjct: 522 QEMD-EQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACT 575



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 161/347 (46%), Gaps = 11/347 (3%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQ 99
           YS+   L  ++  F  I + N+VSW  +ISA+S+      +L +F +ML        PN 
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLE---GVAPNA 58

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
            TL ++  +C S       G+ +H+LSL+          +AL++ Y +  +  +A+ VF+
Sbjct: 59  ITLVAVLNSCGSFRE-LRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFE 117

Query: 160 EIRERDVVCYGAMIVGFA-QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
           E+ E++VV + AM+  ++ Q      ++ +F  M    V + +      L +  +  A+ 
Sbjct: 118 EMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALR 177

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           + + IH     S    +V V T L++ Y K G ++DAR+VFD  +   +   WN+M++ Y
Sbjct: 178 KGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFD-GMPCRSVGTWNSMISAY 236

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           +          +F  ++  G   D  +FL++L A  N     +  K +         E  
Sbjct: 237 SISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETL-QHGKHVRESISETSFELD 295

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           L   T LI+   R    EDA ++   M  + +   W A+++  A HG
Sbjct: 296 LFVGTALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHG 341



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 124/257 (48%), Gaps = 8/257 (3%)

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            YSR  S  +A   F +IR R+VV +  MI  ++      ++L++F  M    V      
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           +   L +      +    ++H  ++  G  +N +V T L++ YGK G + DA+ VF+E +
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEE-M 119

Query: 264 SVLNSIAWNAMMAGYAQQG-DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
           +  N + WNAM+  Y+ QG      +ELF  + + G   +  +FL VL ++ +   A   
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPD-ALRK 178

Query: 323 EKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
            K+I    VR + E  L+ +  T L++   + G L DA ++   MP       W +++S 
Sbjct: 179 GKFIHSC-VR-ESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCR-SVGTWNSMISA 235

Query: 381 SAIHGKADMASKMGKRL 397
            +I  ++  A  + +R+
Sbjct: 236 YSISERSGEAFFIFQRM 252



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 159/380 (41%), Gaps = 38/380 (10%)

Query: 17  DPRIVHARALKSSQADRSIYNN------LITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           D  +VHA +L     +R  + N      L+  Y K   L  +  +F  +   N+V+W A+
Sbjct: 76  DGILVHALSL-----ERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAM 130

Query: 71  ISAHSNS----PLSLNIFLSML----RHPTLSFLPNQRTLASLFKTCASLSHAFLFGL-- 120
           +  +S       L++ +F  ML    +   ++FL     L S+    A     F+     
Sbjct: 131 LGVYSLQGCCWKLAVELFTRMLLEGVKANVITFL---NVLNSVVDPDALRKGKFIHSCVR 187

Query: 121 -SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
            S HSL +        F  +ALV+ Y++  S  +A+KVFD +  R V  + +MI  ++ +
Sbjct: 188 ESEHSLDV--------FVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS 239

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
            R  ++  +F  M+              L A      ++  + +      +  + ++ VG
Sbjct: 240 ERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVG 299

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           T LI  Y +     DA +VF   +   N I W+A++  +A  G     L  F +++  G 
Sbjct: 300 TALITMYARCRSPEDAAQVFGR-MKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGI 358

Query: 300 APDEYSFLAVLTALCN-AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
            P+  +F+++L      +GL  E    I  +   + L+        L++  GR    +DA
Sbjct: 359 LPNRVTFISLLNGFTTPSGL--EELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDA 416

Query: 359 ERIAMAMPFEPDAAVWRALL 378
             +   +   P+   W +++
Sbjct: 417 RTVFDQLEL-PNLISWNSMI 435


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 189/595 (31%), Positives = 313/595 (52%), Gaps = 41/595 (6%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           + + +HA+ +KS     + + N L+  Y K NLL  +  LF+ +P  + VSW ++++A++
Sbjct: 20  NAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYN 79

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            + L   +L+IF  M     L   P+    A+L K CASL  +   G  +H+  +     
Sbjct: 80  QAKLPNKTLSIFHYMFTTDRLQ--PDHFVYATLLKACASLC-SLRLGKQVHARFVLSPFV 136

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA--------------- 177
           D     S+LV  Y++   P  A+ VFD I  +  V + AM+ G+A               
Sbjct: 137 DDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRT 196

Query: 178 ----------------QNSRLVDSLSVFADMRSSDVGST-MYCVSGALRAAAELAAMEQC 220
                           Q+   +D   +F +MR   V       +S  + A A LA +   
Sbjct: 197 PVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLG 256

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           + IHG  + SG +  + +   L+D Y K   +  AR VF+  L   + ++W +++ G AQ
Sbjct: 257 KQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLH-RDVVSWTSIIVGAAQ 315

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G     L+L+  + +    P+E +F+ ++ A  +AGL  +  K  + M   Y++ P L+
Sbjct: 316 HGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQ 375

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
            +TC +  + R+G L +AE +   MP +PD   W ALLS    HG  +M  ++  RL+ +
Sbjct: 376 LFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSL 435

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
           N ++ S YV+++NV +G G+W++++ VRK+M D  V+++ G S I++  +  VF AG+  
Sbjct: 436 NMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETC 495

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGA 520
           H   ++I+  L EL  E  + GY+P    +LH++ ++EK   L++HSE+ A+A+GL+   
Sbjct: 496 HPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAV 555

Query: 521 PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           P G  +RIVKNLRIC DCH   K  S +V +EI+VRD  RYH F +G C+C D W
Sbjct: 556 P-GTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 197/593 (33%), Positives = 310/593 (52%), Gaps = 41/593 (6%)

Query: 19  RIVHARALKSSQADRSIYNNL-ITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HS 75
           R  HAR +K   A       L ++ Y+KS LL  +  LF+  P  ++  +++L++A  HS
Sbjct: 23  RRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHS 82

Query: 76  NSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            SP L L +   ML    L   P+   LAS+    A L  +   G  LH   +       
Sbjct: 83  ESPELVLPLLRRMLSADALR--PDHFVLASIASATARL-RSLCLGKQLHGHFVASPYSSD 139

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL------------ 182
               S+L+  Y +   PD+A+KVFD I  ++ V + A+I G+  N R             
Sbjct: 140 DVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPG 199

Query: 183 -------------------VDSLSVFADMRSSDVG-STMYCVSGALRAAAELAAMEQCRV 222
                              V ++ +F DMR   V     + +S A+  AA+LAA    R 
Sbjct: 200 RTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQ 259

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +H   +  G   ++IVG  ++D Y K   +  AR VF+E ++  + I+W  M+ G AQ G
Sbjct: 260 LHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEE-ITGRDIISWTTMLVGEAQHG 318

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                  L+  + + G  P+E +F+ ++ A  +AGL  +  +  + MK  Y + P L+HY
Sbjct: 319 RAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHY 378

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
           TC +  + R+G L +AE +   MP+ PD A W +LLS    +  A+M+ ++   L+++ P
Sbjct: 379 TCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRP 438

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
              S YV+++NV +  G+WD V  VRK+M D  +RKE G SWIEV  +  +F AG+   +
Sbjct: 439 KYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPID 498

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
             E+I   L EL+ E  + GYVP    ++H++ + EK   L  HSE+LA+AFG++  +P 
Sbjct: 499 LREEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILR-SPL 557

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           G  +R+VKNLR+C DCH   K+IS + +R+I+VRD +R+H F  G C+C + W
Sbjct: 558 GSVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 184/592 (31%), Positives = 314/592 (53%), Gaps = 42/592 (7%)

Query: 21  VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H++ +K+     S+ +N L+  Y K  L+  +L+LF+ +P+ + VSW ++++AH+ + +
Sbjct: 25  LHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALI 84

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L++  +M  H  L   P+    A + + C+SL +  L G  +H+  +     D   
Sbjct: 85  PRRTLSMLNTMFTHDGLQ--PDHFVFACIVRACSSLGYLRL-GKQVHARFMLSFFCDDEV 141

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             S+L+  Y++   PD+A+ VFD I  ++ V + +MI G+A++ R  +++ +F      +
Sbjct: 142 VKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRN 201

Query: 197 VGSTMYCVSGALRAA--------------------------------AELAAMEQCRVIH 224
           + S    +SG +++                                 A LA +E  + IH
Sbjct: 202 LFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIH 261

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           G  +  G +  + +   L+D Y K   +  A+ +F   +   + I+W +++ G AQ G  
Sbjct: 262 GLVIALGFESCLFISNALVDMYAKCSDILAAKDIF-YRMPRKDVISWTSIIVGTAQHGKA 320

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              L L+  + +    P+E +F+ +L A  +AGL     +    M   Y + P L+HYTC
Sbjct: 321 EEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTC 380

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           L+  + R+G L++AE +   +PF+PD   W +LLS    H   +M  ++  R++D+ P D
Sbjct: 381 LLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPED 440

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM-HER 463
            S Y++++NV +G   W  V++VRK+M    VRKE G S I+      VF AG+   H  
Sbjct: 441 PSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPM 500

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
             +I   L +L  E  + GYVP    +L+++  +EK + L++HSE+LA+A+GL+   P G
Sbjct: 501 KNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVP-G 559

Query: 524 KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             +RIVKNLRIC DCH   K+IS +V+REI+VRD  RYH F  G C+C D W
Sbjct: 560 TIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 184/592 (31%), Positives = 313/592 (52%), Gaps = 42/592 (7%)

Query: 21  VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H++ +K+     S+ +N L+  Y K  L+  +L+LF+ +P+ + VSW ++++AH+ + +
Sbjct: 25  LHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALI 84

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L++  +M  H  L   P+    A + + C+SL +  L G  +H+  +     D   
Sbjct: 85  PRRTLSMLNTMFTHDGLQ--PDHFVFACIVRACSSLGYLRL-GKQVHARFMLSXFCDDEV 141

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             S+L+  Y++   PD A+ VFD I  ++ V + +MI G+A++ R  +++ +F      +
Sbjct: 142 VKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRN 201

Query: 197 VGSTMYCVSGALRAA--------------------------------AELAAMEQCRVIH 224
           + S    +SG +++                                 A LA +E  + IH
Sbjct: 202 LFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIH 261

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           G  +  G +  + +   L+D Y K   +  A+ +F   +   + I+W +++ G AQ G  
Sbjct: 262 GLVIALGFESCLFISNALVDMYAKCSDILAAKDIF-YRMPRKDVISWTSIIVGTAQHGKA 320

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              L L+  + +    P+E +F+ +L A  +AGL     +    M   Y + P L+HYTC
Sbjct: 321 EEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTC 380

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           L+  + R+G L++AE +   +PF+PD   W +LLS    H   +M  ++  R++D+ P D
Sbjct: 381 LLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPED 440

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM-HER 463
            S Y++++NV +G   W  V++VRK+M    VRKE G S I+      VF AG+   H  
Sbjct: 441 PSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPM 500

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
             +I   L +L  E  + GYVP    +L+++  +EK + L++HSE+LA+A+GL+   P G
Sbjct: 501 KNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVP-G 559

Query: 524 KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             +RIVKNLRIC DCH   K+IS +V+REI+VRD  RYH F  G C+C D W
Sbjct: 560 TIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 191/561 (34%), Positives = 308/561 (54%), Gaps = 11/561 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA  +K+  +    +   LI  Y +   L  +  + + +P  N+VSWTA+IS +S S
Sbjct: 61  RQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQS 120

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                +L +F+ MLR    +   N+ TLA++  +C  +  +      +HSL +K +    
Sbjct: 121 GRHAEALELFIRMLRAGCKA---NEFTLATVLTSC-PVHQSIQQVEQVHSLVVKTNFESH 176

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F GS+L+  Y +  +   A+KVFD + ERD V   A+I G+AQ     ++L +F  + S
Sbjct: 177 MFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYS 236

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           S +       +  L + + LA++   + +HG  +   L   +++   LID Y K G +  
Sbjct: 237 SGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLY 296

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           +RRVFD N+   ++I+WNAM+ GY + G    V++LF  +      PD  + LAVL+   
Sbjct: 297 SRRVFD-NMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMT-EEVKPDSVTLLAVLSGCS 354

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           + GL  E     + +         + HY C+I  +GR+G+L+ A  +   MPFEP  A+W
Sbjct: 355 HGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIW 414

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            +LL    +H    +   + ++L+D+ P +   YVI++N+ +  G W +V  VRK+M + 
Sbjct: 415 GSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLEN 474

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V KE  +SWI +   +H F + +R H R +DI  K+ E+  + +  G+VP    +LH+V
Sbjct: 475 TVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLHDV 534

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            D +K   L  HSEKLA+ FGL++  P G T++++KNLRIC DCH   K++S+V  REI 
Sbjct: 535 DDEQKERMLLGHSEKLAITFGLMN-TPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREIS 593

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD NR+H   +G+CTCGD W
Sbjct: 594 LRDKNRFHLLKDGACTCGDYW 614



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 150/306 (49%), Gaps = 5/306 (1%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H+  +K       +  + L+  Y R  + D+A+ V D + ER+VV + AMI G++Q
Sbjct: 60  GRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQ 119

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           + R  ++L +F  M  +   +  + ++  L +     +++Q   +H   V +  + ++ V
Sbjct: 120 SGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFV 179

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           G+ L+D YGK+G + +AR+VFD  L   ++++  A+++GYAQ G     L+LF  L   G
Sbjct: 180 GSSLLDMYGKSGNIQEARKVFDM-LPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSG 238

Query: 299 FAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
              +  +F  +LT+L  +GLA     K +  + +R +L   +     LI    + G+L  
Sbjct: 239 MQCNYVTFTTLLTSL--SGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLY 296

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           + R+   MP +  A  W A+L     HG      ++ + + +    D    + V +  S 
Sbjct: 297 SRRVFDNMP-QRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVKPDSVTLLAVLSGCSH 355

Query: 418 VGRWDE 423
            G  DE
Sbjct: 356 GGLVDE 361



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 3/192 (1%)

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
            A+ A  E  A+ + R +H H V +     V + T LI  Y + G + DAR V D  +  
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLD-GMPE 104

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            N ++W AM++GY+Q G  +  LELF  +   G   +E++   VLT+ C    + +  + 
Sbjct: 105 RNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTS-CPVHQSIQQVEQ 163

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +  + V+   E  +   + L+   G++G +++A ++   +P E D     A++S  A  G
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLP-ERDTVSCTAIISGYAQLG 222

Query: 386 KADMASKMGKRL 397
             D A  + ++L
Sbjct: 223 LDDEALDLFRQL 234


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 187/544 (34%), Positives = 299/544 (54%), Gaps = 7/544 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           +   L++ Y K    + +  +F  +   ++V+W+A+++A++ +       L + R   L 
Sbjct: 113 VQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREA-LGLFRQMDLD 171

Query: 95  FL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            + PN+ TL S    CASL      G  +H       +      G+ALV+ Y +    + 
Sbjct: 172 GVAPNKVTLVSGLDACASLGD-LRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEA 230

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A + F +I E++VV + A+   +A+N R  D++ V   M    +          L A A 
Sbjct: 231 AAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAA 290

Query: 214 LAAMEQCRVIHG--HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           +AA++Q R IH   H +  GL+ +V V T L++ Y K G ++ A  +FD+ ++ L+ + W
Sbjct: 291 IAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDK-IAHLDLVLW 349

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N+++A  AQ G     LELF  + + G  P   +F +VL A  +AG+  +  K       
Sbjct: 350 NSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIG 409

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            + + P  EH+ C++  +GRAG + D+E + + MPFEP    W A L     +   D A 
Sbjct: 410 DHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAI 469

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              + L  ++P   + YV+++N+ +  GRW +VA +R+ M+     KE GRSWIEVK +V
Sbjct: 470 WAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRV 529

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F++GD  H R  +I+ +L  L +  +  GYVP  + +LH+V    K   + YHSEKLA
Sbjct: 530 HEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLA 589

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AF L++  P G  +R+VKNLR+C DCH + K+IS++V REIVVRD NR+HRF NG+C+C
Sbjct: 590 MAFALLT-TPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSC 648

Query: 572 GDLW 575
           GD W
Sbjct: 649 GDYW 652



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 173/374 (46%), Gaps = 18/374 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           +R + N LI  Y+K +    +L +F+ I S N+ SWT +++A + +      +L   R  
Sbjct: 9   NRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL-FFRGM 67

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            L  +       S+F +  + +     G S+    L   + ++    +ALV  Y +    
Sbjct: 68  LLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHC 127

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
            +A  VF  +  RDVV + AM+  +A+N    ++L +F  M    V      +   L A 
Sbjct: 128 TDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDAC 187

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A L  +    ++H      G+   V+VGT L++ YGK G +  A   F + +   N +AW
Sbjct: 188 ASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEK-NVVAW 246

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           +A+ A YA+       + + H +++ G AP+  +F++VL A        +  +  ER+ V
Sbjct: 247 SAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHV 306

Query: 332 RYKLEPGLEH----YTCLISAMGRAGRLEDA----ERIAMAMPFEPDAAVWRALLSFSAI 383
              L  GLE      T L++   + G L  A    ++IA       D  +W +L++ +A 
Sbjct: 307 ---LGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA-----HLDLVLWNSLIATNAQ 358

Query: 384 HGKADMASKMGKRL 397
           HG+ + A ++ +R+
Sbjct: 359 HGQTEKALELFERM 372


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 308/563 (54%), Gaps = 15/563 (2%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H   +K     D S+ N L+T Y++++ +    ++F  +P  + VSW + I A + S  
Sbjct: 478  IHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEA 537

Query: 80   S----LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            S    +  FL M++     + PN+ T  ++     S       G  +H+L LK S+ D  
Sbjct: 538  SVLQAIKYFLEMMQ---AGWKPNRVTFINILSA-VSSLSLLELGRQIHALILKHSVADDN 593

Query: 136  FCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               + L+ FY +    ++ + +F  + ER D V + AMI G+  N  L  ++ +   M  
Sbjct: 594  AIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQ 653

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                   + ++  L A A +A +E+   +H  A+ + L+  V+VG+ L+D Y K G +  
Sbjct: 654  KGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDY 713

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            A R F E + V N  +WN+M++GYA+ G     L+LF  ++  G  PD  +F+ VL+A  
Sbjct: 714  ASRFF-ELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACS 772

Query: 315  NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            + GL  E  +  + M   Y+L P +EH++C++  +GRAG ++  E     MP  P+A +W
Sbjct: 773  HVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIW 832

Query: 375  RALLSFS--AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            R +L     A     ++  +  K LI++ P +   YV+++N+ +  G+W++V E R  M+
Sbjct: 833  RTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMR 892

Query: 433  DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            +  V+KE G SW+ +K  VHVF+AGD+ H   E IY KL E+M +   LGYVP     L+
Sbjct: 893  NAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALY 952

Query: 493  NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
            ++    K E L YHSEKLA+AF L   +     +RI+KNLR+C DCH +FKYIS +V R+
Sbjct: 953  DLELENKEELLSYHSEKLAIAFVLTRQSEL--PIRIIKNLRVCGDCHTAFKYISNIVNRQ 1010

Query: 553  IVVRDVNRYHRFLNGSCTCGDLW 575
            I++RD NR+H F  G C+C D W
Sbjct: 1011 IILRDSNRFHHFDGGICSCQDYW 1033



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 152/304 (50%), Gaps = 12/304 (3%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           LH    K  L    F  + LV+ + R  +  +A+K+FDE+ ++++V +  ++ G+AQN  
Sbjct: 61  LHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGM 120

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA--MEQCRVIHGHAVVSGLDRNVIVG 239
             ++  +F  + S+ +    Y +  ALRA  EL    ++    IHG    S    ++++ 
Sbjct: 121 PDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLS 180

Query: 240 TGLIDGYGK-AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
             L+  Y   +  + DARRVF+E + +  S +WN++++ Y ++GD  +  +LF  ++   
Sbjct: 181 NVLMSMYSHCSASIDDARRVFEE-IKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREA 239

Query: 299 FA----PDEYSFLAVLTALCNAGLAGES--EKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
                 P+EY+F +++T  C+    G +  E+ + R++ +      L   + L+S   R 
Sbjct: 240 TELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIE-KSSFVKDLYVGSALVSGFARY 298

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412
           G ++ A+ I   M  + +A     L+   A   + + A+K+ K + D+   + S+Y ++ 
Sbjct: 299 GLIDSAKMIFEQMD-DRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAVLL 357

Query: 413 NVLS 416
           +  +
Sbjct: 358 SAFT 361



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 169/364 (46%), Gaps = 11/364 (3%)

Query: 23  ARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL---ISAHSNSP 78
           AR  KSS   D  + + L++ +++  L+  +  +F  +   N V+   L   ++      
Sbjct: 274 ARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGE 333

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK-PFC 137
            +  IF  M     ++   +   L S F   ++L      G  +H+  ++ +L D     
Sbjct: 334 EAAKIFKEMKDLVEIN-ASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILI 392

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+ALV+ Y++  + DNA+ +F  +  +D V + ++I G   N R  ++++ F  MR + +
Sbjct: 393 GNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGM 452

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             + + V   L + A L  +   + IHG  +  GLD +V V   L+  Y +   + + ++
Sbjct: 453 VPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQK 512

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR--GFAPDEYSFLAVLTALCN 315
           VF   +   + ++WN+ +   A   + S +  + + LEM   G+ P+  +F+ +L+A+ +
Sbjct: 513 VFFL-MPEYDQVSWNSFIGALA-TSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSS 570

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             L     + I  + +++ +         L++  G+  ++ED E I   M    D   W 
Sbjct: 571 LSLLELGRQ-IHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWN 629

Query: 376 ALLS 379
           A++S
Sbjct: 630 AMIS 633



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 158/380 (41%), Gaps = 18/380 (4%)

Query: 14  TSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           T  D   +H +  K+   +D    N L+  + ++  L  + +LF+ +P  N+VSW+ L+S
Sbjct: 54  TVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVS 113

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSL 131
            ++ + +     +      +   LPN   + S  + C  L    L  G+ +H L  K   
Sbjct: 114 GYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPY 173

Query: 132 HDKPFCGSALVHFYSRFR-SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                  + L+  YS    S D+A++VF+EI+ +    + ++I  + +    + +  +F+
Sbjct: 174 ASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFS 233

Query: 191 DMRSS----DVGSTMYCVSGALRAAAEL--AAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
            M+      +     Y     +  A  L    +     +      S   +++ VG+ L+ 
Sbjct: 234 SMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVS 293

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
           G+ + G++  A+ +F E +   N++  N +M G A+Q       ++F   EM+       
Sbjct: 294 GFARYGLIDSAKMIF-EQMDDRNAVTMNGLMVGLARQHQGEEAAKIFK--EMKDLVEINA 350

Query: 305 SFLAVL----TALCNAGLAGESEKWIERMKVRYKL-EPGLEHYTCLISAMGRAGRLEDAE 359
           S  AVL    T   N        + +    +R  L +  +     L++   +   +++A 
Sbjct: 351 SSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNAR 410

Query: 360 RIAMAMPFEPDAAVWRALLS 379
            I   MP   D   W +++S
Sbjct: 411 SIFQLMP-SKDTVSWNSIIS 429


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 316/567 (55%), Gaps = 20/567 (3%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS- 77
           ++H  A+K     +  + N LI  Y K  +L+ +  +F  +   ++V+W ++ISA+    
Sbjct: 189 VMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGG 248

Query: 78  --PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DK 134
               ++ +F  M+        P+  TL SL    A      L   S+H    +       
Sbjct: 249 KVAAAVELFHGMMES---GVCPDVLTLVSLASAVAQCGDE-LGAKSVHCYVRRRGWDVGD 304

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              G+A+V  Y++    D A+KVFD + +RDVV +  +I G+ QN    +++ ++ DM +
Sbjct: 305 IIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHN 364

Query: 195 SD----VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            +    +  T   V   L A + L  ++Q   +H  ++ +GL+ +V V T LID Y K G
Sbjct: 365 HEGLKPIQGTFVSV---LPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCG 421

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            + +A  +F E++   ++  WNA++AG    G  +  L LF  ++     PD  +F+++L
Sbjct: 422 KLVEAMFLF-EHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLL 480

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  +AGL  +   + + M+  Y + P  +HYTC++  +GRAG+L++A     +MP +PD
Sbjct: 481 AACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPD 540

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           +AVW ALL    IHG  +M     + L +++P +   YV+++N+ + +G+WD V  VR +
Sbjct: 541 SAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSL 600

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRM--HERTEDIYTKLAELMEECERLGYVPVWD 488
           ++ + ++K  G S +EVKG V VF +G +   H + E+I   L +L+ + +  GYVP + 
Sbjct: 601 VRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYS 660

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
            +L +V + EK + L  HSE+LA+AFG+++  P G  L I KNLR+C DCH + KYIS++
Sbjct: 661 FVLQDVEEDEKEQILNNHSERLAIAFGIIN-TPPGTPLHIYKNLRVCGDCHSATKYISKI 719

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
            EREI+VRD NR+H F +G C+CGD W
Sbjct: 720 TEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 6/222 (2%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL-HDKPFCGSALVHFYSRFRSPDNAK 155
           P+  T   L +     + A      LH+ +L+L L H   F   +LVH Y RF     A 
Sbjct: 67  PDSFTFPPLVRAAPGPASA----AQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAY 122

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           +VFDE+ ERDV  + AM+ G  +N+R  D++++   M    V      +S  L     L 
Sbjct: 123 RVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLG 182

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
                 V+H +AV  GL   + V   LID YGK G++++A  VF   +++ + + WN+++
Sbjct: 183 DRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFG-GMALRDLVTWNSII 241

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +   Q G  +  +ELFH +   G  PD  + +++ +A+   G
Sbjct: 242 SANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCG 283



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 99/472 (20%), Positives = 205/472 (43%), Gaps = 28/472 (5%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +HA AL+      +++   +L+  Y +   ++ + R+F+ +P  ++ +W A++S    + 
Sbjct: 88  LHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNT 147

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
            + +    + R        +  TL+S+   C  L    L  L +H  ++K  L  + F  
Sbjct: 148 RAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRAL-ALVMHVYAVKHGLSGELFVC 206

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +AL+  Y +      A  VF  +  RD+V + ++I    Q  ++  ++ +F  M  S V 
Sbjct: 207 NALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVC 266

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD-RNVIVGTGLIDGYGKAGIVSDARR 257
             +  +     A A+       + +H +    G D  ++I G  ++D Y K   +  A++
Sbjct: 267 PDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQK 326

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCNA 316
           VFD NL   + ++WN ++ GY Q G  +  + +++ +    G  P + +F++VL A    
Sbjct: 327 VFD-NLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYL 385

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G   +  + +  + ++  L   +   TCLI    + G+L +A  +   MP       W A
Sbjct: 386 GGLQQGMR-MHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMP-RRSTGPWNA 443

Query: 377 LLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           +++   +HG    A  +  ++   +I P D   +V +    S  G  D+           
Sbjct: 444 IIAGLGVHGHGAKALSLFSQMQQEEIKP-DHVTFVSLLAACSHAGLVDQ----------- 491

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
                 GRS+ ++   V+  +   + +    D+  +  +L E  E +  +P+
Sbjct: 492 ------GRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPI 537


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/565 (33%), Positives = 313/565 (55%), Gaps = 14/565 (2%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           RI+HA  +KS    D  I + L++ Y K      +  LF+ +P  + VSW +L+S  +  
Sbjct: 65  RIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKI 124

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                 L++F  M     L    N+ T  S+   C S   A   G  +H  ++KL L  +
Sbjct: 125 GQLGECLSVFCKMKSDSELKL--NEFTFLSVISACVS-EKACDEGYYVHCCAMKLGLVYE 181

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
               +ALV+ Y +F   ++A ++F E+   E+ +V + +++   AQN    ++ + F  M
Sbjct: 182 VKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMM 241

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R +        +   L+A           V+HG     GLD N+ + T L++ Y K G +
Sbjct: 242 RVNGFFPDDATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRL 301

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLT 311
           +++R+VF+E +S  + +AW AM+AGYA  G     +E F  ++   G  PD  +F  +L+
Sbjct: 302 NNSRKVFEE-ISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLS 360

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  ++GL  E + +   M   YK++P L+HY+C++  +GR G L+DA  +   MPFEP++
Sbjct: 361 ACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNS 420

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            VW ALL    +H   D+  +  K LI ++P D   Y++++N+ S  G W++ ++VR +M
Sbjct: 421 GVWGALLGACRVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLM 480

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           K++ + +  G S+IE   K+H F+  D  H  +  I+ KL E+M++ + +G+V   + +L
Sbjct: 481 KNKVLTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDVGFVHETESIL 540

Query: 492 HNVGDREKREALWYHSEKLALAFG-LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           H+V +  K + +  HSEK+ALA+G LV+ A     L I+KNLRICRDCH + K++S V +
Sbjct: 541 HDVDEEVKIDMITKHSEKIALAYGLLVTNADM--PLVIIKNLRICRDCHNTVKFVSMVEK 598

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           R I++RD  R+H+F  G C+CGD W
Sbjct: 599 RTIIIRDTKRFHQFSGGLCSCGDYW 623



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 89/173 (51%), Gaps = 4/173 (2%)

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
           CR+IH H + S   R+  +G  L+  Y K G   DA  +FDE +   + ++WN++++G A
Sbjct: 64  CRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDE-MPKKDFVSWNSLVSGLA 122

Query: 280 QQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           + G     L +F  ++       +E++FL+V++A C +  A +   ++    ++  L   
Sbjct: 123 KIGQLGECLSVFCKMKSDSELKLNEFTFLSVISA-CVSEKACDEGYYVHCCAMKLGLVYE 181

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV-WRALLSFSAIHGKADMA 390
           ++    L++  G+ G +E A R+   MP    + V W ++++  A +G  + A
Sbjct: 182 VKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEA 234


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 189/569 (33%), Positives = 317/569 (55%), Gaps = 23/569 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VHA  +K     D SI N+L + YSK   L ++++ F  I   +++SWT++IS+   +  
Sbjct: 187 VHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQ 246

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +  SL+ F+ ML        PN+ TL S+   C  +    L G  +HSLS+KL       
Sbjct: 247 AARSLSFFMDMLSD---GMKPNEYTLTSVLSACCVMLTLDL-GAQIHSLSIKLGYGSSIL 302

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-----------S 185
             +++++ Y +      A+K+F+ +   ++V + AMI G A+   L +           +
Sbjct: 303 IKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTA 362

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           L++F  +  S +   ++  S  L   + L A+EQ   IHG  + SG+  +V+VGT L+  
Sbjct: 363 LAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSM 422

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K G +  A + F E +     I+W +M+ G+A+ G     L+LF  + + G  P++ +
Sbjct: 423 YNKCGSIDKASKAFLE-MPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVT 481

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           F+ VL+A  +AGLA E+  + E M+ +Y ++P ++H+ CLI    R GR+E+A  +   M
Sbjct: 482 FVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKM 541

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
            FEP+  +W  L++    HGK+D+     ++L+ + P D   YV + N+    GRW +V+
Sbjct: 542 NFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVS 601

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           +VRK+MK+ +V K    SWI +K KV+ F   D+ H ++ ++Y  L  ++ E + LGY P
Sbjct: 602 KVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEP 661

Query: 486 VWDEMLHNVGDREKR--EALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           + D  +    + E+R   +   HSEKLA+AFGL++  P    +R+VK++ +CRDCH   +
Sbjct: 662 IEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLN-LPTATPIRVVKSITMCRDCHNFIR 720

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           +IS +  REIV+RD  + H+FLNG C+CG
Sbjct: 721 FISLLKGREIVIRDSKQLHKFLNGYCSCG 749



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 223/447 (49%), Gaps = 25/447 (5%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           L Q+   +N +T+ R++H   +K+    D  +   L+  YSK  ++  + ++F+++P  N
Sbjct: 70  LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRN 129

Query: 64  IVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
           + +WT L++ +   S+  L+L +F+ ML        P+  TL  +   C+SL  +  FG 
Sbjct: 130 VNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAY---PSNYTLGIVLNACSSL-QSIEFGK 185

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            +H+  +K  +      G++L  FYS+FR  + A K F  I+E+DV+ + ++I     N 
Sbjct: 186 QVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNG 245

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
           +   SLS F DM S  +    Y ++  L A   +  ++    IH  ++  G   ++++  
Sbjct: 246 QAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKN 305

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-----------QSTVLE 289
            ++  Y K G + +A+++F E +  LN + WNAM+AG+A+  D            ST L 
Sbjct: 306 SIMYLYLKCGWLIEAQKLF-EGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALA 364

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
           +F  L   G  PD ++F +VL+ +C+  +A E  + I    ++  +   +   T L+S  
Sbjct: 365 MFQKLYRSGMKPDLFTFSSVLS-VCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMY 423

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSA 407
            + G ++ A +  + MP     + W ++++  A HG +  A ++ +  RL+ I P +   
Sbjct: 424 NKCGSIDKASKAFLEMPSRTMIS-WTSMITGFARHGLSQQALQLFEDMRLVGIKP-NQVT 481

Query: 408 YVIVANVLSGVGRWDEVAEVRKVMKDR 434
           +V V +  S  G  DE     ++M+ +
Sbjct: 482 FVGVLSACSHAGLADEALYYFELMQKQ 508


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 181/546 (33%), Positives = 315/546 (57%), Gaps = 11/546 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNSPLSLNIFLSMLR 89
           D  + + L+  YS+   +  ++R+F+ +P  + V+W+ +++    +  P+      S +R
Sbjct: 141 DVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMR 200

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
              +S   ++  +  + + C S  +A + G S+H   L+  +       ++LV  Y++  
Sbjct: 201 EHGVS--DDEVVMVGVIQACMSTGNARI-GASVHGRLLRHCMRMDVVTTTSLVSMYAKNG 257

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
             D A +VF  +  R+ V + A+I GFAQN R V++L +F ++++  +    + +  AL 
Sbjct: 258 HLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALL 317

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A A +  ++  + IHG  ++  L+   I+GT ++D Y K G +  AR++F++ LS  + +
Sbjct: 318 ACASVGFLKLGKSIHGF-ILRRLEWQCILGTAVLDMYSKCGSLESARKLFNK-LSSRDLV 375

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            WNA++A     G     L LF  L   G  PD  +F ++L+AL ++GL  E + W +RM
Sbjct: 376 LWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRM 435

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
              + +EP  +HY C++  + R+G +E+A  +  +M  EP  A+W  LLS    + K ++
Sbjct: 436 IKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLEL 495

Query: 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG 449
              + K+++++ P D     +V+N+ +   +WD+V E+RK+MKD   +K  G S IEVKG
Sbjct: 496 GETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKG 555

Query: 450 KVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEK 509
             H F+  D+ H +  +I   +A+L  E  +LGYVP  + + H   D ++ + L YHSE+
Sbjct: 556 TRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYH---DLDEDQLLSYHSER 612

Query: 510 LALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSC 569
           LA+AFGL++ +P G  L I+KNLR+C DCH++ KYIS++V+REIVVRD  R+H F +G+C
Sbjct: 613 LAIAFGLLNTSP-GTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGAC 671

Query: 570 TCGDLW 575
           +CGD W
Sbjct: 672 SCGDYW 677



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 166/386 (43%), Gaps = 33/386 (8%)

Query: 67  WTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS----------HAF 116
           W  L+SAHS +  +    L + R    S  PN  T       CA L            AF
Sbjct: 76  WNGLLSAHSRAG-APGAALRVFRALPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
             G            HD   C SAL+H YSR  + + A +VFD +  +D V +  M+ GF
Sbjct: 135 AAGYG----------HDVFVC-SALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGF 183

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
               R V++L++++ MR   V      + G ++A            +HG  +   +  +V
Sbjct: 184 VTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDV 243

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
           +  T L+  Y K G +  A +VF   +   N + W+A+++G+AQ G     L+LF  L+ 
Sbjct: 244 VTTTSLVSMYAKNGHLDVACQVF-RMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQA 302

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            G  P  ++ ++ L A  + G   +  K I    +R +LE      T ++    + G LE
Sbjct: 303 DGLQPCSWALVSALLACASVGFL-KLGKSIHGFILR-RLEWQCILGTAVLDMYSKCGSLE 360

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANV 414
            A ++   +    D  +W A+++    HG    A  + + L    I P D + +  + + 
Sbjct: 361 SARKLFNKLS-SRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKP-DHATFASLLSA 418

Query: 415 LSGVGRWDEVAEVRKVMKDRRVRKEG 440
           LS  G    + E  K   DR +++ G
Sbjct: 419 LSHSG----LVEEGKFWFDRMIKEFG 440


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/551 (34%), Positives = 293/551 (53%), Gaps = 15/551 (2%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLS 86
           K  + D   YN ++  Y +S  +  +L  FN +P  +I SW  LIS  + +      F  
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAF-- 187

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS--LHSLSLKLSLHDKPFCGSALVHF 144
                  S +P +  ++        + H  L        ++ +K  + +     +A++  
Sbjct: 188 ----DLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVE-----TAMLTG 238

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           Y +F   + A+++F  +  +++V + +MI G+ +N R  D L VF  M  S V      +
Sbjct: 239 YMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSL 298

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           S  L   + L+A+   R +H     S L ++    T LI  Y K G +  A ++F E + 
Sbjct: 299 SSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLE-MP 357

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             + I WNAM++GYAQ G     L LF  +      PD  +F+AV+ A  +AG      +
Sbjct: 358 RKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ 417

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
           + + MK  + +E    HYTC+I  +GRAGRL++A  +   MPF P AA++  LL    IH
Sbjct: 418 YFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIH 477

Query: 385 GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSW 444
              D+A    + L++++P   + YV +AN+ +   +WD+VA+VRK+MK+  V K  G SW
Sbjct: 478 KNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSW 537

Query: 445 IEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALW 504
           IE+K   H F + DR+H     I+ KL EL  + +  GYVP  +  LH+V +  K + L 
Sbjct: 538 IEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLL 597

Query: 505 YHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF 564
           +HSEKLA+AFGL+  AP G  +R+ KNLR+C DCH + K+IS + +REI+VRD  R+H F
Sbjct: 598 WHSEKLAIAFGLMKTAP-GTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHF 656

Query: 565 LNGSCTCGDLW 575
            NG C+CGD W
Sbjct: 657 RNGFCSCGDYW 667



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 18/204 (8%)

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ-QGDQSTVLELFHL 293
           +V+     I  + +A  +  AR VF E +SV  ++ WN M++GY +  G      ELF  
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVF-EKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           +      PD  S+  +L     +     +  +  +M V+      +  +  LIS   + G
Sbjct: 131 IP----EPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVK-----DIASWNTLISGFAQNG 181

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           +++ A  +   MP E +   W A++S    HG  + A ++ K +         + V+   
Sbjct: 182 QMQKAFDLFSVMP-EKNGVSWSAMISGYVEHGDLEAAEELYKNV------GMKSVVVETA 234

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVR 437
           +L+G  ++ +V    ++ +   V+
Sbjct: 235 MLTGYMKFGKVELAERIFQRMAVK 258


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/577 (32%), Positives = 305/577 (52%), Gaps = 13/577 (2%)

Query: 1   MALDLNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHI 59
           + + +N  P   N     R +HAR  KS    D  I + L+T Y+K      +L+LF+ +
Sbjct: 45  LLIAVNSCPSISNC----REIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDM 100

Query: 60  PSPNIVSWTALISAHSNS-PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           P  ++VSW +LIS  S    +SL  F +M     +S  PN+ T+ S+   C   S A   
Sbjct: 101 PHKDLVSWNSLISGFSRCLHMSLTAFYTM--KFEMSVKPNEVTILSMISAC---SGALDA 155

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H   +K+    +    ++L++ Y +     +A ++F+ I + + V + ++I     
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVT 215

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N    + +  F  MR   +      +   L+A   L   +    IHG    +G    + +
Sbjct: 216 NGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITI 275

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            T L+D Y K G +S +  VF E +   + +AW AM+AGYA  G     ++LF  +  +G
Sbjct: 276 ATALLDTYAKLGRLSASYGVFTE-VGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKG 334

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
             PD  +F  +L+A  ++GL  E + +   M   Y +EP ++HY+C++  +GR G L DA
Sbjct: 335 LEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDA 394

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
             +   MP EP+A VW ALL    +HG  ++  ++ + LI++ P D   Y++++N+ S  
Sbjct: 395 YEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSAS 454

Query: 419 GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC 478
             W + A+VR ++K+R +++  G S IE   K H F  GDR H  TE IY+KL EL+ + 
Sbjct: 455 RSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKI 514

Query: 479 ERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDC 538
            + GY    + +L +V +  K + +  HSEKLA+AFGL+  +  G+ L I KNLRIC DC
Sbjct: 515 RKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLV-SKEGEALIITKNLRICGDC 573

Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           H + K IS + +R I++RD  R+H F +G C+C D W
Sbjct: 574 HSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 112/226 (49%), Gaps = 15/226 (6%)

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           VS  L A     ++  CR IH     S L R+  +G  L+  Y K G   DA ++FD+ +
Sbjct: 42  VSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDD-M 100

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCNAGLAGES 322
              + ++WN++++G+++    S  L  F+ ++      P+E + L++++A C+  L  ++
Sbjct: 101 PHKDLVSWNSLISGFSRCLHMS--LTAFYTMKFEMSVKPNEVTILSMISA-CSGAL--DA 155

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
            K+I    ++      ++    LI+  G++G L  A R+  A+P +P+   W ++++   
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAAQV 214

Query: 383 IHGKA----DMASKMGKRLIDINPYDDSAYVIVANVLS-GVGRWDE 423
            +G A    D  +KM  R + I   + +   ++   L  GVG+  E
Sbjct: 215 TNGCAREGIDYFNKM--RRLGIEQDEGTILALLQACLHLGVGKLAE 258


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 181/558 (32%), Positives = 298/558 (53%), Gaps = 7/558 (1%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H   +K+   +D S    L++ Y+K    + +L  FN + S +IV+W +LI+ ++    
Sbjct: 452  IHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGD 511

Query: 80   SLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
              N  + M     LS + P+  T+  +   CA L+     G  +H L +KL         
Sbjct: 512  PYNA-IDMFYKLRLSAINPDAGTMVGVVPACALLND-LDQGTCIHGLIVKLGFESDCHVK 569

Query: 139  SALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  Y++  S  +A+ +F++    +D V +  +I  + QN    +++S F  MR  + 
Sbjct: 570  NALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENF 629

Query: 198  GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                      L AAA LAA  +    H   +  G   N +VG  LID Y K G +  + +
Sbjct: 630  HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEK 689

Query: 258  VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            +F+E +   ++++WNAM++GYA  G     + LF L++      D  SF++VL+A  + G
Sbjct: 690  LFNE-MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXG 748

Query: 318  LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
            L  E  K    M  +Y ++P LEHY C++  +GRAG  ++       MP EPDA VW AL
Sbjct: 749  LVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGAL 808

Query: 378  LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
            L    +H    +       L+ + P + + +V+++++ +  GRW +  + R  M D  ++
Sbjct: 809  LGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK 868

Query: 438  KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
            K  G SW+E+K KVH F  GD+ H + E ++     L+E+ E++GYVP    +L NV + 
Sbjct: 869  KTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEE 928

Query: 498  EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            +K   L+ HSE+LA+ F L++  P G T++IVKNLR+C DCH + K+IS++  R I+VRD
Sbjct: 929  DKEMFLYSHSERLAITFALLN-TPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRD 987

Query: 558  VNRYHRFLNGSCTCGDLW 575
              R+H F +G C+C D W
Sbjct: 988  ATRFHHFEDGICSCNDYW 1005



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 191/419 (45%), Gaps = 20/419 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HSNS 77
           +H  AL+    +D  +   L+  Y+K      + +LF  +   ++V+W+A+I+A   +  
Sbjct: 351 IHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410

Query: 78  PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           P  +L++F  M         PN+ TL S+   CA LS     G S+H  ++K  +     
Sbjct: 411 PEEALSLFQEMQNQ---KMKPNRVTLMSILPACADLS-LLKLGKSIHCFTVKADMDSDLS 466

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+ALV  Y++      A   F+ +  RD+V + ++I G+AQ     +++ +F  +R S 
Sbjct: 467 TGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSA 526

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      + G + A A L  ++Q   IHG  V  G + +  V   LID Y K G +  A 
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAE 586

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F++     + + WN ++A Y Q G     +  FH + +  F P+  +F++VL A   A
Sbjct: 587 FLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPA--AA 644

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYT----CLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            LA   E       +   ++ G    T     LI    + G+L  +E++   M  + D  
Sbjct: 645 YLAAFREGMAFHACI---IQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHK-DTV 700

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            W A+LS  A+HG  D A  +   + +     DS  V   +VLS       V E RK+ 
Sbjct: 701 SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS--VSFVSVLSACRHXGLVEEGRKIF 757



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 169/362 (46%), Gaps = 12/362 (3%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           +HA+ + S         +LI  YS  +    +  +F+  P+P+ + W ++I A++ S   
Sbjct: 51  IHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQY 110

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L ++  M+        P++ T   + K C   +     G+  H    +  L    F 
Sbjct: 111 NEALEMYYCMVEK---GLEPDKYTFTFVLKACTG-ALNLQEGVWFHGEIDRRGLERDVFI 166

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+ LV  YS+      A++VFD++ +RDVV + AMI G +Q+    +++  F  M+   V
Sbjct: 167 GAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGV 226

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             +   +        +L+ +E CR IHG+  V   D +  V  GLID Y K G V  ARR
Sbjct: 227 EPSSVSLLNLFPGICKLSNIELCRSIHGY--VFRRDFSSAVSNGLIDLYSKCGDVDVARR 284

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VFD+ +   + ++W  MMAGYA  G    VLELF  +++     ++ S ++   A     
Sbjct: 285 VFDQMVD-QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAET- 342

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  E  K I    ++ +++  +   T L+    + G  E A+++   +    D   W A+
Sbjct: 343 IDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR-DLVAWSAI 401

Query: 378 LS 379
           ++
Sbjct: 402 IA 403



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 176/378 (46%), Gaps = 18/378 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS--PL-SLNIFLSML 88
           D  I   L+  YSK   L  +  +F+ +P  ++V+W A+I+  S S  P  +++ F SM 
Sbjct: 163 DVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSM- 221

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               +   P+  +L +LF     LS+  L   S+H    +          + L+  YS+ 
Sbjct: 222 --QLVGVEPSSVSLLNLFPGICKLSNIEL-CRSIHGYVFRRDFSSA--VSNGLIDLYSKC 276

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              D A++VFD++ ++D V +G M+ G+A N   V+ L +F  M+  +V         A 
Sbjct: 277 GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAF 336

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            AAAE   +E+ + IHG A+   +D +++V T L+  Y K G    A+++F   L   + 
Sbjct: 337 LAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLF-WGLQGRDL 395

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           +AW+A++A   Q G     L LF  ++ +   P+  + +++L A  +  L  +  K I  
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL-KLGKSIHC 454

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA- 387
             V+  ++  L   T L+S   + G    A      M    D   W +L++  A  G   
Sbjct: 455 FTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSLINGYAQIGDPY 513

Query: 388 ---DMASKMGKRLIDINP 402
              DM  K+  RL  INP
Sbjct: 514 NAIDMFYKL--RLSAINP 529



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 11/248 (4%)

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           L++ YS F   D A+ VFD       + + +MI  + ++ +  ++L ++  M    +   
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
            Y  +  L+A      +++    HG     GL+R+V +G GL+D Y K G +  AR VFD
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC---NAG 317
           + +   + +AWNAM+AG +Q  D    ++ F  +++ G  P   S L +   +C   N  
Sbjct: 189 K-MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIE 247

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L      ++ R      +  G      LI    + G ++ A R+   M  + D   W  +
Sbjct: 248 LCRSIHGYVFRRDFSSAVSNG------LIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTM 300

Query: 378 LSFSAIHG 385
           ++  A +G
Sbjct: 301 MAGYAHNG 308


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 189/569 (33%), Positives = 317/569 (55%), Gaps = 23/569 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VHA  +K     D SI N+L + YSK   L ++++ F  I   +++SWT++IS+   +  
Sbjct: 181 VHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQ 240

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +  SL+ F+ ML        PN+ TL S+   C  +    L G  +HSLS+KL       
Sbjct: 241 AARSLSFFMDMLSD---GMKPNEYTLTSVLSACCVMLTLDL-GAQIHSLSIKLGYGSSIL 296

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-----------S 185
             +++++ Y +      A+K+F+ +   ++V + AMI G A+   L +           +
Sbjct: 297 IKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTA 356

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           L++F  +  S +   ++  S  L   + L A+EQ   IHG  + SG+  +V+VGT L+  
Sbjct: 357 LAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSM 416

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K G +  A + F E +     I+W +M+ G+A+ G     L+LF  + + G  P++ +
Sbjct: 417 YNKCGSIDKASKAFLE-MPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVT 475

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           F+ VL+A  +AGLA E+  + E M+ +Y ++P ++H+ CLI    R GR+E+A  +   M
Sbjct: 476 FVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKM 535

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
            FEP+  +W  L++    HGK+D+     ++L+ + P D   YV + N+    GRW +V+
Sbjct: 536 NFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVS 595

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           +VRK+MK+ +V K    SWI +K KV+ F   D+ H ++ ++Y  L  ++ E + LGY P
Sbjct: 596 KVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEP 655

Query: 486 VWDEMLHNVGDREKR--EALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           + D  +    + E+R   +   HSEKLA+AFGL++  P    +R+VK++ +CRDCH   +
Sbjct: 656 IEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLN-LPTATPIRVVKSITMCRDCHNFIR 714

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           +IS +  REIV+RD  + H+FLNG C+CG
Sbjct: 715 FISLLKGREIVIRDSKQLHKFLNGYCSCG 743



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 223/447 (49%), Gaps = 25/447 (5%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           L Q+   +N +T+ R++H   +K+    D  +   L+  YSK  ++  + ++F+++P  N
Sbjct: 64  LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRN 123

Query: 64  IVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
           + +WT L++ +   S+  L+L +F+ ML        P+  TL  +   C+SL  +  FG 
Sbjct: 124 VNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAY---PSNYTLGIVLNACSSL-QSIEFGK 179

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            +H+  +K  +      G++L  FYS+FR  + A K F  I+E+DV+ + ++I     N 
Sbjct: 180 QVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNG 239

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
           +   SLS F DM S  +    Y ++  L A   +  ++    IH  ++  G   ++++  
Sbjct: 240 QAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKN 299

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-----------QSTVLE 289
            ++  Y K G + +A+++F E +  LN + WNAM+AG+A+  D            ST L 
Sbjct: 300 SIMYLYLKCGWLIEAQKLF-EGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALA 358

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
           +F  L   G  PD ++F +VL+ +C+  +A E  + I    ++  +   +   T L+S  
Sbjct: 359 MFQKLYRSGMKPDLFTFSSVLS-VCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMY 417

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSA 407
            + G ++ A +  + MP     + W ++++  A HG +  A ++ +  RL+ I P +   
Sbjct: 418 NKCGSIDKASKAFLEMPSRTMIS-WTSMITGFARHGLSQQALQLFEDMRLVGIKP-NQVT 475

Query: 408 YVIVANVLSGVGRWDEVAEVRKVMKDR 434
           +V V +  S  G  DE     ++M+ +
Sbjct: 476 FVGVLSACSHAGLADEALYYFELMQKQ 502


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 195/593 (32%), Positives = 305/593 (51%), Gaps = 40/593 (6%)

Query: 20  IVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +V AR L  +  + D   +  +IT Y +++ L+ +  +F  +      +W A+IS + + 
Sbjct: 208 MVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKPF 136
                      +   L    +  T  ++   CA++  +F  G  +H+  LK  L+ +  F
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG-SFQMGKQMHAYILKNELNPNHSF 326

Query: 137 C---GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA---------------------- 171
           C    +AL+  Y +    D A+K+F  +  R+++ + A                      
Sbjct: 327 CLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMP 386

Query: 172 ---------MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
                    MI G AQN    + L +F  MR        +  +GAL A + L A+E  R 
Sbjct: 387 VKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQ 446

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +H   V  G + ++ VG  +I  Y K G+V  A  VF    SV + ++WN+M+A   Q G
Sbjct: 447 LHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSV-DLVSWNSMIAALGQHG 505

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                +ELF  +   G  PD  +FL VLTA  +AGL  +   +   M   Y + P  +HY
Sbjct: 506 HGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHY 565

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
             ++    RAG    A  +  +MP +P A VW ALL+   IHG  D+  +  ++L  + P
Sbjct: 566 ARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMP 625

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
            +D  YV+++N+ + VGRW++VA+VRK+M+D+ VRKE   SWIEV+ KVHVF+  D +H 
Sbjct: 626 QNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHP 685

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPR 522
               +Y  L +L  E ++LGY+P    +LH++   +K  AL  HSEKLA+ FG++   P 
Sbjct: 686 EVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMK-LPP 744

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             T+R+ KN+RIC DCH +FK++S+V  REI+VRD  R+H F NG C+C D W
Sbjct: 745 DATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 114/515 (22%), Positives = 201/515 (39%), Gaps = 130/515 (25%)

Query: 9   PQPQNTSTDPRIVHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSW 67
           PQ   + +  R VHA  + S    R  + N L+  Y KS+ + Y+ +LF  IP+P+ ++ 
Sbjct: 23  PQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIAR 82

Query: 68  TALISAH-------------SNSPL-----------------------SLNIFLSMLRHP 91
           T LI+A+             + +PL                       +L +F +M R  
Sbjct: 83  TTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRD- 141

Query: 92  TLSFLPNQRTLASLF----------KTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCGSA 140
              F P+  T  S+           + C  +  A +  G+   S S+  +L       S 
Sbjct: 142 --DFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALL------SV 193

Query: 141 LVHFYSRFRSPD----NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR--- 193
            V   S    P     +A+K+FDE+ +RD + +  MI G+ +N  L  +  VF  M    
Sbjct: 194 YVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENL 253

Query: 194 ----SSDVGSTMYC------------------------VSGALRAAAELAAMEQCRVIHG 225
               ++ +   ++C                         +  + A A + + +  + +H 
Sbjct: 254 GAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHA 313

Query: 226 HAVVSGLDRN----VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY--- 278
           + + + L+ N    + V   LI  Y K   V +AR++F   + V N I WNA+++GY   
Sbjct: 314 YILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF-YAMPVRNIITWNAILSGYVNA 372

Query: 279 ----------------------------AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
                                       AQ G     L+LF  + + GF P +++F   L
Sbjct: 373 GRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGAL 432

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           TA C+   A E+ + +    V    E  L     +IS   + G +E AE + + MP   D
Sbjct: 433 TA-CSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVD 490

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
              W ++++    HG    A ++  +++    + D
Sbjct: 491 LVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPD 525


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/544 (35%), Positives = 300/544 (55%), Gaps = 6/544 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPLSLNIFLSMLRHPTL 93
           + N LI  Y +   L ++ R+F+ I S  + SW ALI AH+ N   S  I L        
Sbjct: 309 VPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNAC 368

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
              P+  ++ SL   C +L H  L G + H   L+  L    F   +L+  Y +      
Sbjct: 369 GQKPDWFSIGSLLLACGNLKH-LLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESL 427

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG--STMYCVSGALRAA 211
           A+ +FD + E+D V +  MI G++QN    +SL +F +M+S   G   ++   + AL A 
Sbjct: 428 ARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVAC 487

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           +EL A+   + +H  A+ + L  +  + + +ID Y K G V DAR  FD  L   ++++W
Sbjct: 488 SELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFD-RLKAKDAVSW 546

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
             M+ GYA  G     + L+  +   G  PD +++L +L A  +AG+  +   + + M+ 
Sbjct: 547 TVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRN 606

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
             K+E  LEHY C+I  + RAGR  DA  +   MP EPDA +  ++LS   +HG+ ++  
Sbjct: 607 LPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGK 666

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           K+  +L+++ P+    YV+ +N+ +G  +WDE+ +VRK+++D  V KE G SWI++ GKV
Sbjct: 667 KVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKV 726

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           + F+AG+        +      L E+    GY P    MLH + + EK EAL +HSEK A
Sbjct: 727 YSFVAGENSLPEMHKVRKMWYSLEEKIRAAGYAPDTTVMLHELEEEEKVEALRWHSEKQA 786

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL+  A   K +R+ KN+R+C+DCH + K IS+V +REIVVRD  R+H F +G C+C
Sbjct: 787 IAFGLLRTAGPTK-VRVFKNIRMCKDCHNAAKLISKVADREIVVRDKKRFHHFRDGLCSC 845

Query: 572 GDLW 575
           GD W
Sbjct: 846 GDYW 849



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 148/311 (47%), Gaps = 17/311 (5%)

Query: 17  DPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           D R VHA A K   AD   +  N+L++ Y +   +  + ++F  +   N+VSW AL++A 
Sbjct: 81  DGRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAV 140

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           ++    L +F   L     +  P++ TL ++   CA+L+     G ++H L++K      
Sbjct: 141 ADPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPET-GRAVHGLAVKSGWDAA 199

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           P   + LV  Y++     +A+  F E      R+VV +  M+ G+A+N     +  +  +
Sbjct: 200 PRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLRE 259

Query: 192 MRSSDVGS-----TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD-RNVIVGTGLIDG 245
           M+  + G      TM  V        ELA +   R +H   V  GL     +V   LI  
Sbjct: 260 MQMEERGVPADEITMLSVLPVCSGLPELAKL---RELHAFVVRRGLHLTGDMVPNALIAA 316

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEY 304
           YG+ G +  A RVFD   S + S +WNA++  +AQ G+ S  +ELF  +    G  PD +
Sbjct: 317 YGRCGCLLHACRVFDGICSKMVS-SWNALIGAHAQNGEASAAIELFREMTNACGQKPDWF 375

Query: 305 SFLAVLTALCN 315
           S  ++L A  N
Sbjct: 376 SIGSLLLACGN 386



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 5/192 (2%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           + D  I  +L++ Y +    S +  LF+ +   + VSW  +I+ +S + L   SL +F  
Sbjct: 406 EKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFRE 465

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M +       P+     S    C+ L  A   G  +H  +LK  L +  F  S+++  YS
Sbjct: 466 M-QSKKGGHWPSLLAATSALVACSELP-AVRLGKEMHCFALKADLCEDSFLSSSIIDMYS 523

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +  S D+A+  FD ++ +D V +  MI G+A N R  +++ ++  M    +    +   G
Sbjct: 524 KCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLG 583

Query: 207 ALRAAAELAAME 218
            L A      +E
Sbjct: 584 LLMACGHAGMLE 595


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 295/560 (52%), Gaps = 35/560 (6%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKT 108
           L Y+ R+FN I SPN   W A+I A+SNS      FLS  +  + S   N  T   L + 
Sbjct: 38  LLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRA 97

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
           C +L  A    L +H L +KL      F  +AL+H Y+       A+++FD I ERD V 
Sbjct: 98  CRNLL-AMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVS 156

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA--------------------- 207
           +  MI G+ ++  +  +  VF DM   +V S    +SG                      
Sbjct: 157 WNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGF 216

Query: 208 ----------LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                     L A A L A++Q R +H + + +G+D + ++G  L++ Y K G + +A  
Sbjct: 217 ELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALS 276

Query: 258 VFDENLSVLNSI-AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           VF +       +  W AM+ G+A  G     LE F+ +   G  P+  +F AVL A    
Sbjct: 277 VFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYG 336

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E ++  + MK  Y + P +EHY C++  +GR+GRL++A+ +   MP +P A +W A
Sbjct: 337 GLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGA 396

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    IH    + S++G  L++++      Y+ +A +L+  G+W E AEVR  MK   V
Sbjct: 397 LLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGV 456

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECER-LGYVPVWDEMLHNVG 495
               G+S + + G VH FLAG + H + E I  KL ++ E   +  GY P   ++L ++ 
Sbjct: 457 PISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLE 516

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + EK  A+  HSEKLA+AFGL++  P G T+R++KNLRICRDCH   K +S++  REI++
Sbjct: 517 NEEKETAMAQHSEKLAIAFGLINTKP-GTTIRVIKNLRICRDCHTVAKLVSQIYSREIIM 575

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD  R+H F +GSC+C D W
Sbjct: 576 RDRVRFHHFRDGSCSCKDYW 595



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 136/309 (44%), Gaps = 13/309 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D   +N +I  Y KS  +  +  +F  +P  N+VSWT+LIS    +  S+          
Sbjct: 153 DAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQ 212

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
              F  +   +ASL   CA+L  A   G  LH   L   +      G ALV+ Y +    
Sbjct: 213 NAGFELDGVAIASLLTACANLG-ALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDM 271

Query: 152 DNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           + A  VF +++  ++DV  + AMI GFA + R V++L  F  MR   +       +  LR
Sbjct: 272 EEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLR 331

Query: 210 AAAELAAMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           A +    +E+ + +         ++ ++     ++D  G++G + +A+ +  +     ++
Sbjct: 332 ACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSA 391

Query: 269 IAWNAMMAGYAQQGDQSTVLEL-FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
           + W A++       D     ++  HL+E+       Y  LA +       LA E  KW E
Sbjct: 392 VIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATI-------LAAEG-KWKE 443

Query: 328 RMKVRYKLE 336
             +VR K++
Sbjct: 444 AAEVRLKMK 452


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/566 (31%), Positives = 303/566 (53%), Gaps = 24/566 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA A+++   ++  I N L+  Y+K   + Y    F  +   +++SWT +I+ ++ +  
Sbjct: 371 VHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEF 430

Query: 80  SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLS--------HAFLFGLSLHSLSLKLS 130
            L   +++ R   +  +  +   + S+ + C+ L         H ++F   L  + L+  
Sbjct: 431 HLEA-INLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQ-- 487

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                   +A+V+ Y      D A++ F+ IR +D+V + +MI     N   V++L +F 
Sbjct: 488 --------NAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFY 539

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            ++ +++      +  AL A A L+++++ + IHG  +  G      + + L+D Y   G
Sbjct: 540 SLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCG 599

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V ++R++F  ++   + I W +M+      G  +  + LF  +  +   PD  +FLA+L
Sbjct: 600 TVENSRKMF-HSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALL 658

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  ++GL  E +++ E MK  Y+LEP  EHY C++  + R+  LE+A      MP +P 
Sbjct: 659 YACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPS 718

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           + +W ALL    IH   ++     K L+  +  +   Y +++N+ +  GRW++V EVR  
Sbjct: 719 SEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLR 778

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL-GYVPVWDE 489
           MK   ++K  G SWIEV  K+H F+A D+ H +T+DIY KLA+  +  E+  GY+     
Sbjct: 779 MKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKF 838

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           + HNV + EK + L+ HSE+LAL +GL+   P+G  +RI KNLRIC DCH  FK  S V 
Sbjct: 839 VFHNVSEEEKTQMLYGHSERLALGYGLLV-TPKGTCIRITKNLRICDDCHTFFKIASEVS 897

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
           +R +VVRD NR+H F  G C+CGD W
Sbjct: 898 QRPLVVRDANRFHHFERGLCSCGDFW 923



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 171/398 (42%), Gaps = 14/398 (3%)

Query: 21  VHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHI--PSPNIVSWTALISAHSNS 77
           +H  A+K    +   + N LI  Y K   L  +  LF+ I     + VSW ++ISAH   
Sbjct: 167 IHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAE 226

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
              L       R   +    N  T  +  +     S   L G+ +H   LK +     + 
Sbjct: 227 GNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL-GMGIHGAVLKSNHFADVYV 285

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  Y++    ++A +VF+ +  RD V +  ++ G  QN    D+L+ F DM++S  
Sbjct: 286 ANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQ 345

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 V   + A+     + + + +H +A+ +GLD N+ +G  L+D Y K   V     
Sbjct: 346 KPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGH 405

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            F E +   + I+W  ++AGYAQ       + LF  ++++G   D     +VL A   +G
Sbjct: 406 AF-ECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRAC--SG 462

Query: 318 LAGESEKWIERMKVRYKLEPGLEHY---TCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           L  +S  +I  +   Y  +  L        +++  G  G ++ A R A       D   W
Sbjct: 463 L--KSRNFIREIH-GYVFKRDLADIMLQNAIVNVYGEVGHIDYARR-AFESIRSKDIVSW 518

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412
            ++++    +G    A ++   L   N   DS  +I A
Sbjct: 519 TSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISA 556



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 136/306 (44%), Gaps = 12/306 (3%)

Query: 9   PQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           PQ Q        +HA  LKS      +   L+  Y K   L  ++++F+ +    I SW 
Sbjct: 63  PQGQQ-------LHALLLKS-HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWN 114

Query: 69  ALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           AL+ A  +S   L           L    +  T  S+ K C +L  + L G  +H +++K
Sbjct: 115 ALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRL-GAEIHGVAVK 173

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSL 186
               +  F  +AL+  Y +      A+ +FD I   + D V + ++I         +++L
Sbjct: 174 CGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEAL 233

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
           S+F  M+   V S  Y    AL+   + + ++    IHG  + S    +V V   LI  Y
Sbjct: 234 SLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMY 293

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            K G + DA RVF E++   + ++WN +++G  Q    S  L  F  ++  G  PD+ S 
Sbjct: 294 AKCGRMEDAGRVF-ESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSV 352

Query: 307 LAVLTA 312
           L ++ A
Sbjct: 353 LNLIAA 358



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 5/262 (1%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  LH+L LK   H   F  + LV  Y +  S  +A KVFDE+ ER +  + A++  F  
Sbjct: 65  GQQLHALLLKS--HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVS 122

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           + + ++++ ++ DMR   V          L+A   L        IHG AV  G    V V
Sbjct: 123 SGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFV 182

Query: 239 GTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
              LI  YGK G +  AR +FD   +   ++++WN++++ +  +G+    L LF  ++  
Sbjct: 183 CNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEV 242

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G A + Y+F+A L  + +     +    I    ++      +     LI+   + GR+ED
Sbjct: 243 GVASNTYTFVAALQGVEDPSFV-KLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMED 301

Query: 358 AERIAMAMPFEPDAAVWRALLS 379
           A R+  +M    D   W  LLS
Sbjct: 302 AGRVFESM-LCRDYVSWNTLLS 322



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 7/182 (3%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HSN 76
           R +H    K   AD  + N ++  Y +   + Y+ R F  I S +IVSWT++I+   H+ 
Sbjct: 470 REIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNG 529

Query: 77  SPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            P+ +L +F S+      +  P+   + S     A+LS +   G  +H   ++     + 
Sbjct: 530 LPVEALELFYSL---KQTNIQPDSIAIISALSATANLS-SLKKGKEIHGFLIRKGFFLEG 585

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              S+LV  Y+   + +N++K+F  +++RD++ + +MI     +     ++++F  M   
Sbjct: 586 PIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQ 645

Query: 196 DV 197
           +V
Sbjct: 646 NV 647


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 304/570 (53%), Gaps = 34/570 (5%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N++I    K   +  + +LFN +   ++VSW+ALIS +  + +     +  +        
Sbjct: 242 NSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMR 301

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS---------- 146
            ++  + S+   CA LS     G  +H L +++ +       +AL+H YS          
Sbjct: 302 LDEVVVVSVLSACAHLS-IVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQK 360

Query: 147 ---------------------RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDS 185
                                +  S + A+ +FD + E+D+V + A+I G+AQ+    ++
Sbjct: 361 LFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSET 420

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           L++F +M+   +      +   + A   LAA++Q + +H +   +GL  NVI+GT L+D 
Sbjct: 421 LALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDM 480

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K G V +A  VF+  +      +WNA++ G A  G     L++F  ++  G  P+E +
Sbjct: 481 YMKCGCVENALEVFN-GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEIT 539

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           F+ VL A  + GL  E       M  ++ +EP ++HY C++  +GRAG L +AE++  +M
Sbjct: 540 FMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESM 599

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           P  PD A W ALL     HG  +M  ++G++LI++ P  D  +V+++N+ +  G W++V 
Sbjct: 600 PMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVL 659

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           EVR +MK + V K  G S IE  G VH FLAGD+ H     +   L E+ +  +  GY P
Sbjct: 660 EVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAP 719

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
             +E+  ++ + EK   L+ HSEKLA+AFGL++ +P    +RI+KNLRIC DCH + K I
Sbjct: 720 DTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPP-TPIRIMKNLRICNDCHTAAKLI 778

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S+   REIVVRD +R+H F  G+C+C D W
Sbjct: 779 SKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 128/259 (49%), Gaps = 6/259 (2%)

Query: 28  SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSM 87
           S   D+  +N++I+   K   +  +  LF+ +P  +IVSW+A+IS ++      +  L++
Sbjct: 365 SHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHD-CFSETLAL 423

Query: 88  LRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
                L  + P++  L S+   C  L+ A   G  +H+   K  L      G+ L+  Y 
Sbjct: 424 FHEMQLGQIRPDETILVSVISACTHLA-ALDQGKWVHAYIRKNGLKVNVILGTTLLDMYM 482

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +    +NA +VF+ + E+ V  + A+I+G A N  +  SL +F++M+++ V        G
Sbjct: 483 KCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMG 542

Query: 207 ALRAAAELAAMEQCRVIHGHAVVS--GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
            L A   +  +++ R  H  +++   G++ NV     ++D  G+AG++++A ++ +    
Sbjct: 543 VLGACRHMGLVDEGRC-HFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPM 601

Query: 265 VLNSIAWNAMMAGYAQQGD 283
             +   W A++    + GD
Sbjct: 602 APDVATWGALLGACKKHGD 620



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 44/316 (13%)

Query: 44  SKSNLLSYSLR-LFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
           SK N LS +L+  FNH P+       +++  H ++  +L  F               R L
Sbjct: 16  SKLNQLSSALKSTFNHKPTFKPTITLSILETHLHNCHNLKQF--------------NRIL 61

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           + +  T       F+      S  LK S  D PF G             D + ++FD I 
Sbjct: 62  SQMILT------GFISDTFAASRLLKFST-DSPFIG------------LDYSLQIFDRIE 102

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
             +   +  M+  + Q++    +L ++  M  ++VG   Y     ++A A        + 
Sbjct: 103 NSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKE 162

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH H +  G D +V V   LI+ Y   G + DAR++FDE+  VL+S++WN+++AGY ++G
Sbjct: 163 IHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDES-PVLDSVSWNSILAGYVKKG 221

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
           D      +F  +  R          +++  L   G   E+ K    M      E  +  +
Sbjct: 222 DVEEAKLIFDQMPQRNIVASN----SMIVLLGKMGQVMEAWKLFNEMD-----EKDMVSW 272

Query: 343 TCLISAMGRAGRLEDA 358
           + LIS   + G  E+A
Sbjct: 273 SALISGYEQNGMYEEA 288


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 173/549 (31%), Positives = 310/549 (56%), Gaps = 9/549 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           + D ++ N LI  YSK   +  + ++F+ +   ++VSW  +I  ++ + +   +L+IFL 
Sbjct: 93  EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 152

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M R+    F  ++ T++S+   C     A L    LH LS+K  +    + G+AL+  Y+
Sbjct: 153 M-RNEGFKF--SEFTISSVLSACGVNCDA-LECKKLHCLSVKTCIDLNLYVGTALLDLYA 208

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +     +A +VF+ ++++  V + +M+ G+ QN    ++L ++   +   +    + +S 
Sbjct: 209 KCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSS 268

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            + A + LAA+ + + +H     SG   NV V +  +D Y K G + ++  +F E +   
Sbjct: 269 VICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSE-VQEK 327

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N   WN +++G+A+      V+ LF  ++  G  P+E +F ++L+   + GL  E  ++ 
Sbjct: 328 NLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFF 387

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           + M+  Y L P + HY+C++  +GRAG L +A  +  ++PF+P A++W +LL+   ++  
Sbjct: 388 KLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKN 447

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++A    ++L ++ P +   +V+++N+ +   +W+E+A+ RK+++D  V+K  G+SWI+
Sbjct: 448 LELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWID 507

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           +K KVH F  G+  H R  +I + L  L+ +  + GY P  +  LH+V   +K E L  H
Sbjct: 508 IKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQH 567

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLAL FGL+   P    +RI+KNLRIC DCHE  K  S    R I+VRDVNR+H F +
Sbjct: 568 SEKLALVFGLMC-LPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSD 626

Query: 567 GSCTCGDLW 575
           G C+CGD W
Sbjct: 627 GHCSCGDFW 635



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 157/341 (46%), Gaps = 6/341 (1%)

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
             N+  +  + + CA  + A +   + H   +++ L       + L++ YS+    + A+
Sbjct: 58  FSNRNLVHEILQLCAR-NGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELAR 116

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           +VFD + ER +V +  MI  + +N    ++L +F +MR+     + + +S  L A     
Sbjct: 117 QVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNC 176

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
              +C+ +H  +V + +D N+ VGT L+D Y K G++ DA +VF E++   +S+ W++M+
Sbjct: 177 DALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVF-ESMQDKSSVTWSSMV 235

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           AGY Q  +    L L+   +      ++++  +V+ A  N     E  K +  +  +   
Sbjct: 236 AGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVICKSGF 294

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
              +   +  +    + G L ++  I  +   E +  +W  ++S  A H +      + +
Sbjct: 295 GSNVFVASSAVDMYAKCGSLRES-YIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFE 353

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           ++     + +   V  +++LS  G    V E R+  K  R 
Sbjct: 354 KMQQDGMHPNE--VTFSSLLSVCGHTGLVEEGRRFFKLMRT 392



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 15/213 (7%)

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYC--------VSGALRAAAELAAMEQCRVIHGHAV 228
           +  S L  ++SV A     +V    Y         V   L+  A   A+ + +  HG  +
Sbjct: 29  SNTSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKII 88

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
              L+ +V +   LI+ Y K G V  AR+VFD  L   + ++WN M+  Y +   +S  L
Sbjct: 89  RIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLE-RSLVSWNTMIGLYTRNRMESEAL 147

Query: 289 ELFHLLEMR--GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
           ++F  LEMR  GF   E++  +VL+A C         K +  + V+  ++  L   T L+
Sbjct: 148 DIF--LEMRNEGFKFSEFTISSVLSA-CGVNCDALECKKLHCLSVKTCIDLNLYVGTALL 204

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
               + G ++DA ++  +M  +  +  W ++++
Sbjct: 205 DLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVA 236


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 191/566 (33%), Positives = 314/566 (55%), Gaps = 24/566 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+K+   +D  + N+L+  Y+K   + Y   +F+ +P  ++VSWT +I+ H+ +  
Sbjct: 441 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG- 499

Query: 80  SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLS--------HAFLFGLSLHSLSLKLS 130
           S +  L + R   L  +  +   ++S+   C+ L         H+++    L  L L+  
Sbjct: 500 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQ-- 557

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                   + +V  Y    + D A ++F+ I  +DVV + +MI  +  N    ++L +F 
Sbjct: 558 --------NGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFH 609

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            M+ + V      +   L AAA L+A+++ + IHG  +  G      + + L+D Y + G
Sbjct: 610 LMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCG 669

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  +R VF+  +   + + W +M+  Y   G     ++LF  +E    APD  +F+AVL
Sbjct: 670 TLEKSRNVFN-FIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVL 728

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  ++GL  E  +++E MK  Y+LEP  EHY CL+  +GRA  LE+A +    M  EP 
Sbjct: 729 YACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPT 788

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A VW ALL    IH   ++     ++L++++P +   YV+V+NV +   RW +V EVR  
Sbjct: 789 AEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMR 848

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL-GYVPVWDE 489
           MK   ++K  G SWIEV  KVH F+A D+ H ++ +IY+KL+++ E+  +  GYV     
Sbjct: 849 MKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKF 908

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +LHN  + EK + L+ HSE+LA+A+G+++  P G +LRI KNLR+C DCH   K IS+  
Sbjct: 909 VLHNAKEEEKVQMLYGHSERLAIAYGMLT-TPEGASLRITKNLRVCGDCHNFCKLISKFF 967

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
           ERE+V+RD NR+H F  G C+CGD+W
Sbjct: 968 ERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 182/376 (48%), Gaps = 15/376 (3%)

Query: 21  VHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSP 78
           VH  A+K        + N+++  Y+K N L+ + +LF+ +P   ++VSW ++ISA+S++ 
Sbjct: 238 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
            S+            S  PN  T  +  + C   S     G+ +H+  LK S +   F  
Sbjct: 298 QSIEALRLFGEMQKASLAPNTYTFVAALQACED-SSFIKQGMFIHATVLKSSYYINVFVA 356

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS--- 195
           +AL+  Y+RF     A  +F  + + D + + +M+ GF QN    ++L  + +MR +   
Sbjct: 357 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 416

Query: 196 -DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            D+ + +  ++ + R+   L  M+    IH +A+ +GLD ++ VG  L+D Y K   +  
Sbjct: 417 PDLVAVISIIAASARSGNTLNGMQ----IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKY 472

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
              +FD+ +   + ++W  ++AG+AQ G  S  LELF  +++ G   D     ++L A C
Sbjct: 473 MDCIFDK-MPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLA-C 530

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +      S K I    +R  L   L     ++   G  G ++ A R+   + F+ D   W
Sbjct: 531 SGLKLISSVKEIHSYIIRKGLSD-LVLQNGIVDVYGECGNVDYAARMFELIEFK-DVVSW 588

Query: 375 RALLSFSAIHGKADMA 390
            +++S    +G A+ A
Sbjct: 589 TSMISCYVHNGLANEA 604



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 165/394 (41%), Gaps = 46/394 (11%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLF---NHIPSPNIVSWTALISAHS 75
           RI++   L   +  + I N  IT       L   LR +     IPS  +     L   H 
Sbjct: 12  RILNTERLSEREVAQDIKNKAIT-------LPMRLRYYVMAAPIPSFYLNCHPVLKKIHQ 64

Query: 76  NSPLSLNIF-LSMLRHPTLSFL---------------------PNQRTL----ASLFKTC 109
           N PL ++ F L  +  P+L  +                     P+Q +L    +S+ + C
Sbjct: 65  NPPLKISKFPLKPVETPSLREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELC 124

Query: 110 ASLSHAFLFGLSLHS-LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
            S   A   G  +H+ +    +L +  F  + LV  Y +     +A+K+FD +  + +  
Sbjct: 125 GS-KKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFT 183

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDV---GSTMYCVSGALRAAAELAAMEQCRVIHG 225
           + AMI  +  N   + SL ++ +MR S +     T  C+   L+A   L        +HG
Sbjct: 184 WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCI---LKACGLLKDRRCGAEVHG 240

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
            A+  G    V V   ++  Y K   ++ AR++FD      + ++WN+M++ Y+  G   
Sbjct: 241 LAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSI 300

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             L LF  ++    AP+ Y+F+A L A  ++    +   +I    ++      +     L
Sbjct: 301 EALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG-MFIHATVLKSSYYINVFVANAL 359

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           I+   R G++ +A  I   M  + D   W ++LS
Sbjct: 360 IAMYARFGKMGEAANIFYNMD-DWDTISWNSMLS 392


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 165/424 (38%), Positives = 254/424 (59%), Gaps = 1/424 (0%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           ++A KVF+ + E+D+V + ++I GFA N +  ++L+++  M S  V    + +   L A 
Sbjct: 58  ESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSAC 117

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           AELA +   R  H + V  GL++N+     L+D Y K G +S+AR++FDE     N ++W
Sbjct: 118 AELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSW 177

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            +++ G A  G     LE F  +E  G  P E +F+ VL A  + G+  E  ++ +RMK 
Sbjct: 178 TSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKE 237

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           +Y + P +EHY C++  +GRAG L++A      MP +P+A +WR LL    IHG   + +
Sbjct: 238 QYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGA 297

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
               RL+ + P D   YV+++N+ +   RW +V EVR+ M    VRK  G S +E+   V
Sbjct: 298 FARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHV 357

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F+ GDR H ++E IY  L E+  + +  GYVP    +L ++ + EK  AL+YHSEK+A
Sbjct: 358 HEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIA 417

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AF L++  P G  +RI+KNLR+C DCH + K IS+V ER+IVVRD +R+H F +GSC+C
Sbjct: 418 IAFMLINTLP-GTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSC 476

Query: 572 GDLW 575
            D W
Sbjct: 477 RDYW 480



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 114/257 (44%), Gaps = 16/257 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D    + +IT Y +S     + ++F  +P  +IV+W ++I+  + +           R  
Sbjct: 45  DTVTLDTMITAYFES-----AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMG 99

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
           +    P+  T+ SL   CA L+   + G   H   +K+ L+      +AL+  Y++  + 
Sbjct: 100 SEGVEPDGFTMVSLLSACAELA-TLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTI 158

Query: 152 DNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
             A+K+FDE+  ER+VV + ++IVG A N    ++L  F DM    +  +     G L A
Sbjct: 159 SEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYA 218

Query: 211 AAELAAMEQC-----RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
            +    + +      R+   + +V  ++        ++D  G+AG++ +A     +    
Sbjct: 219 CSHCGIVNEGFEYFKRMKEQYDIVPRIEHY----GCMVDLLGRAGLLKEAYDYIQDMPLQ 274

Query: 266 LNSIAWNAMMAGYAQQG 282
            N++ W  ++      G
Sbjct: 275 PNAVIWRTLLGACTIHG 291


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/461 (37%), Positives = 271/461 (58%), Gaps = 11/461 (2%)

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD--NAKKVFDEIRERDVVCYGAMIVGFAQ 178
           SLH+L  K+         + ++  Y++  S D   A+KVFD + ERDVV + +MI  +AQ
Sbjct: 219 SLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQ 277

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYC----VSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           N    +++ +++ M   +VG  + C    +S  L A A   A++  + IH   V  GL+ 
Sbjct: 278 NGMSAEAIGLYSKML--NVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEE 335

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           NV VGT ++D Y K G V  A R F   +   N ++W+AM+ GY   G     LE+F  +
Sbjct: 336 NVYVGTSIVDMYSKCGRVEMASRAF-RKIKEKNILSWSAMITGYGMHGRGQEALEIFTEM 394

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
           +  G  P+  +F++VL A  +AGL  E   W   MK  + +E G+EHY C++  +GRAG 
Sbjct: 395 KRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGC 454

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414
           L++A  +   M  +PDAA+W ALLS   IH   ++A    KRL +++  +   YV+++N+
Sbjct: 455 LDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNI 514

Query: 415 LSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAEL 474
            +    W +V  +R ++K RR+ K  G S  E+KGK+++F  GD+ H +  +IY+ L +L
Sbjct: 515 YAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKL 574

Query: 475 MEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRI 534
           +E  +  GYVP    +LH++ + EK  AL  HSEKLA+AF L++  PR   + I+KNLR+
Sbjct: 575 LERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPR-SVIHIIKNLRV 633

Query: 535 CRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           C DCH + K+I+++ EREI++RD+ R+H F +G C+C D W
Sbjct: 634 CSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score = 38.9 bits (89), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTL 93
            +++  YSK   +  + R F  I   NI+SW+A+I+    H     +L IF  M R    
Sbjct: 341 TSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRS--- 397

Query: 94  SFLPNQRTLASLFKTCASLSHAFLF 118
              PN  T  S+   C   SHA L 
Sbjct: 398 GLRPNYITFISVLAAC---SHAGLL 419


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 182/563 (32%), Positives = 312/563 (55%), Gaps = 10/563 (1%)

Query: 17  DPRIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH- 74
           + R  H   LK+  +  + + N L++ YSK +++  ++ ++N +P  +IV++ +++S+  
Sbjct: 151 EGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLV 210

Query: 75  SNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            N  L   L +  SM+     S   ++ T  + F  CASL    L GL +H   L   + 
Sbjct: 211 ENGYLREGLEVLRSMVSE---SVKWDKVTFVNAFSLCASLKDLRL-GLHVHGKMLTSDVE 266

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              +  SA+++ Y +      A+ VFD ++ R+VV + A++    QN    ++L++F+ M
Sbjct: 267 CDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKM 326

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
              +V S  +  +  L A A L+A     ++HGH+  SG   +V+VG  LI+ Y K+G +
Sbjct: 327 EQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDI 386

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A++VF + +   + I WNAM+ G++  G     L +F  +      P+  +F  VL+A
Sbjct: 387 EAAKKVFSDMMH-RDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSA 445

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL  E   ++  +  ++ ++PGLEHYTC++S + + G+L +A       P + D  
Sbjct: 446 CGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVV 505

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            WR LL+   +H    +   + + +++++P D   Y +++N+ +   RWD V +VRK+M+
Sbjct: 506 AWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMR 565

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           D++++KE G SWIE+    H+F + D  H      Y K+ EL+   + LGY P    +LH
Sbjct: 566 DKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLH 625

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V D +K   L YHSEKLA+A+GL+   P   ++ ++KNLRIC DCH + + IS+V  R 
Sbjct: 626 DVEDEQKEYYLSYHSEKLAIAYGLLK-LPSEASILVIKNLRICDDCHSAVRLISKVTNRV 684

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD NR+H F +G C+C D W
Sbjct: 685 IVVRDANRFHHFRDGRCSCLDYW 707



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 187/427 (43%), Gaps = 40/427 (9%)

Query: 19  RIVHARALKSSQA-DRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           + +H+  + +S+A + SI   N+LI  Y+K N +S +  LF+ +P  N+VSW+AL++ + 
Sbjct: 49  KTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYL 108

Query: 76  NSPLSLNI---FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            +  SL +      M+    +S  PN+  LA    +C         G   H L LK    
Sbjct: 109 LNGFSLKVIRLLKDMISEGNVS--PNEYILAIAISSCCDRGRVEE-GRQCHGLLLKTGFS 165

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              +  +ALV  YS+     +A  V++E+   D+V Y +++    +N  L + L V   M
Sbjct: 166 FHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSM 225

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            S  V         A    A L  +     +HG  + S ++ +  V + +I+ YGK G  
Sbjct: 226 VSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKS 285

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR VFD  L   N + W A+MA   Q G     L LF  +E      +E+++  +L A
Sbjct: 286 LMARGVFD-GLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNA 344

Query: 313 LCNAGLA---------GESEKWIERMKVRYKLEPGLEHYT----CLISAMGRAGRLEDAE 359
              AGL+         G SEK             G +H+      LI+   ++G +E A+
Sbjct: 345 C--AGLSARRNGSLLHGHSEK------------SGFKHHVMVGNALINMYAKSGDIEAAK 390

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419
           ++   M    D   W A++   + HG    A  + + ++    + +  YV    VLS  G
Sbjct: 391 KVFSDM-MHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPN--YVTFTGVLSACG 447

Query: 420 RWDEVAE 426
               V E
Sbjct: 448 HLGLVQE 454


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/577 (32%), Positives = 305/577 (52%), Gaps = 13/577 (2%)

Query: 1   MALDLNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHI 59
           + + +N  P   N     R +HAR  KS    D  I + L+T Y+K      +L+LF+ +
Sbjct: 45  LLIAVNSCPSISNC----REIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDM 100

Query: 60  PSPNIVSWTALISAHSNS-PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           P  ++VSW +LIS  S    +SL  F +M     +S  PN+ T+ S+   C   + A   
Sbjct: 101 PHKDLVSWNSLISGFSRCLHMSLTAFYTM--KFEMSVKPNEVTILSMISAC---NGALDA 155

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +H   +K+    +    ++L++ Y +     +A ++F+ I + + V + ++I     
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVT 215

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N    + +  F  MR   +      +   L+A   L   +    IHG    +G    + +
Sbjct: 216 NGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITI 275

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            T L+D Y K G +S +  VF E +   + +AW AM+AGYA  G     ++LF  +  +G
Sbjct: 276 ATALLDTYAKLGRLSASYGVFTE-VGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKG 334

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
             PD  +F  +L+A  ++GL  E + +   M   Y +EP ++HY+C++  +GR G L DA
Sbjct: 335 LEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDA 394

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
             +   MP EP+A VW ALL    +HG  ++  ++ + LI++ P D   Y++++N+ S  
Sbjct: 395 YEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSAS 454

Query: 419 GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC 478
             W + A+VR ++K+R +++  G S IE   K H F  GDR H  TE IY+KL EL+ + 
Sbjct: 455 RSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKI 514

Query: 479 ERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDC 538
            + GY    + +L +V +  K + +  HSEKLA+AFGL+  +  G+ L I KNLRIC DC
Sbjct: 515 RKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLV-SKEGEALIITKNLRICGDC 573

Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           H + K IS + +R I++RD  R+H F +G C+C D W
Sbjct: 574 HSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 112/226 (49%), Gaps = 15/226 (6%)

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           VS  L A     ++  CR IH     S L R+  +G  L+  Y K G   DA ++FD+ +
Sbjct: 42  VSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDD-M 100

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCNAGLAGES 322
              + ++WN++++G+++    S  L  F+ ++      P+E + L++++A CN  L  ++
Sbjct: 101 PHKDLVSWNSLISGFSRCLHMS--LTAFYTMKFEMSVKPNEVTILSMISA-CNGAL--DA 155

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
            K+I    ++      ++    LI+  G++G L  A R+  A+P +P+   W ++++   
Sbjct: 156 GKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAAQV 214

Query: 383 IHGKA----DMASKMGKRLIDINPYDDSAYVIVANVLS-GVGRWDE 423
            +G A    D  +KM  R + I   + +   ++   L  GVG+  E
Sbjct: 215 TNGCAREGIDYFNKM--RRLGIEQDEGTILALLQACLHLGVGKLAE 258


>gi|242053821|ref|XP_002456056.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
 gi|241928031|gb|EES01176.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
          Length = 592

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 188/547 (34%), Positives = 298/547 (54%), Gaps = 15/547 (2%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           ++L+T Y++  L   SLR F  +P+P +  +W++LIS+ + + L+   F +  R      
Sbjct: 53  HHLLTFYARCALPDLSLRAFLDLPAPPSPAAWSSLISSFAQNGLAAAAFDTFRRMLAAGV 112

Query: 96  LPNQRTLASLFKTCA---SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
               R + S  K  A   +LS       +LH L+ K       F GSA++  Y++     
Sbjct: 113 PATDRNIPSAAKAVAAAETLSRPPFAPHALHGLAAKTPFAGDVFVGSAILDMYAKCGHLA 172

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A+++FDE+ ER+VV + A+I G+A       ++ +F       V    + VS  +R  A
Sbjct: 173 DARRLFDEMPERNVVSWSALICGYADAGMHPAAMGIFRLALEEAVPVNDFTVSSIIRVCA 232

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE----NLSVLNS 268
                E    +H  A  + LD +  VG+ L+  Y K G+V  A RVF+E    NL +   
Sbjct: 233 AATLFELGAQVHARATKTALDASPFVGSSLVSVYSKCGLVECAYRVFNEAPEKNLGI--- 289

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
             WNA++   AQ G  +   E F  ++  GF P+  +FL ++TA  +AGL  E +++   
Sbjct: 290 --WNAVLIASAQHGHTAAAFERFMEMQNAGFRPNHITFLCLVTACSHAGLVDEGKRYFSL 347

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           MK  Y +EP  EHY  ++  +GR GR+++A  +  +MP EP  +VW ALL    I   AD
Sbjct: 348 MK-DYGIEPQAEHYASMVDLLGRVGRIKEALDLIESMPMEPPESVWGALLMSCRIFKDAD 406

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
            A    KRL +       A++++++  +  GR  + A  RK M+D  VRKE G SW+E  
Sbjct: 407 TAEIAAKRLFETGSRSSGAHMLLSSTYAAAGRHIDAALARKAMRDAGVRKETGLSWLEAA 466

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
           G+VH F++  R H+R+E+IY  L ++ E+ E  GYV     ++ +V   EKR  + YHSE
Sbjct: 467 GEVHTFVSNCRRHQRSEEIYKVLEKVGEKMEAAGYVADTSAVVKDVDGDEKRATVRYHSE 526

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           +LA+  GL+   P+G  +R++KNLR+C DCH + KY+++   R +V+RD  R+HRF +G 
Sbjct: 527 RLAIGLGLLI-VPQGVPIRVMKNLRVCDDCHSAIKYLTKCTGRVVVLRDNRRFHRFEDGV 585

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 586 CSCGDFW 592


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 194/581 (33%), Positives = 308/581 (53%), Gaps = 42/581 (7%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSM 87
           +D  I N+LI  Y+K   L    R+F +IP  ++VSW ++I+A         +L +F  M
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEM 228

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
               T +  PN  T+  +   CA  S  F FG  +HS   +  + +     +A++  Y++
Sbjct: 229 ---ETQNVKPNGITMVGVLSACAKKSD-FEFGRWVHSYIERNRIGESLTLSNAMLDMYTK 284

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG- 206
             S ++AK++FD++ E+D+V +  M+VG+A+      +  +F  M + D+ +    +S  
Sbjct: 285 CGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAY 344

Query: 207 -------------------------------ALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
                                           L A A+L AM+    IH +    G+  N
Sbjct: 345 EQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLN 404

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
             + T LID Y K G +  A  VF  ++   +   W+AM+AG A  G     + LF  ++
Sbjct: 405 CHLTTSLIDMYCKCGDLQKALMVF-HSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQ 463

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
                P+  +F  +L A  + GL  E   +  +M++ Y + PG++HY C++  +GRAG L
Sbjct: 464 EDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLL 523

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
           E+A  +   MP  P A+VW ALL    IH    +A +   +LI++ P +  AYV+++N+ 
Sbjct: 524 EEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIY 583

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           +  G+WD V+ +RK+M+D  ++KE G S IEV G VH FL GD  H   + IY KL E++
Sbjct: 584 AKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIV 643

Query: 476 EECERLGYVPVWDEMLHNVGDRE-KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRI 534
              E +GYVP    +L  V + + K +AL+ HSEKLA+AFGL+S   + + +RIVKNLR+
Sbjct: 644 ARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTG-QSQPIRIVKNLRV 702

Query: 535 CRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           C DCH   K +S++ +REI++RD  R+H F  G C+C D W
Sbjct: 703 CGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 138/518 (26%), Positives = 225/518 (43%), Gaps = 72/518 (13%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNL--LSYSLRLFNHIPSPNIVSWTALISAH--- 74
           +HA+ L++    D    + LIT  + S    L Y+ ++F+ IP PN+ +W  LI A+   
Sbjct: 54  IHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASS 113

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           SN   SL IFL ML H +  F P++ T   L K  + L   F  G + H + +K+ L   
Sbjct: 114 SNPHQSLLIFLRML-HQSPDF-PDKFTFPFLIKAASELEELFT-GKAFHGMVIKVLLGSD 170

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  ++L+HFY++        +VF  I  RDVV + +MI  F Q     ++L +F +M +
Sbjct: 171 VFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMET 230

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            +V      + G L A A+ +  E  R +H +   + +  ++ +   ++D Y K G V D
Sbjct: 231 QNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVED 290

Query: 255 ARRVFD------------------------------ENLSVLNSIAWNAMMAGYAQQGDQ 284
           A+R+FD                              + +   +  AWNA+++ Y Q G  
Sbjct: 291 AKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKP 350

Query: 285 STVLELFHLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
              LELFH L++   A PDE + ++ L+A    G A +   WI     +  ++      T
Sbjct: 351 KEALELFHELQLSKTAKPDEVTLVSTLSACAQLG-AMDLGGWIHVYIKKQGMKLNCHLTT 409

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA----SKMGKRLID 399
            LI    + G L+ A  +  ++    D  VW A+++  A+HG    A    SKM +  + 
Sbjct: 410 SLIDMYCKCGDLQKALMVFHSVE-RKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVK 468

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDR 459
            N       V   N+L        V E              GR++      V+  L G +
Sbjct: 469 PNA------VTFTNILCACSHVGLVEE--------------GRTFFNQMELVYGVLPGVK 508

Query: 460 MHERTEDIYTK---LAELMEECERLGYVP---VWDEML 491
            +    DI  +   L E +E  E++   P   VW  +L
Sbjct: 509 HYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALL 546


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 191/557 (34%), Positives = 302/557 (54%), Gaps = 25/557 (4%)

Query: 26  LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLN 82
           +K  + D   YN +++ Y +++ +  +   F  +P  +  SW  +I+  + +     + +
Sbjct: 31  VKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARD 90

Query: 83  IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF----CG 138
           +FL M   PT + +     + S +  C  L  A           LKL     PF      
Sbjct: 91  LFLIM---PTKNVV-TWNAMISGYVECGDLDSA-----------LKL-FEKAPFKSVVAW 134

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +A++  Y +      A+++F+++ E+++V + AMI G+ +N R  D + +F  M    + 
Sbjct: 135 TAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQ 194

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                +S AL   +EL+A++  R +H     S L  +   GT LI  Y K G++ D  ++
Sbjct: 195 PNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKL 254

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F + +   + + WNAM++GYAQ G+    L LF  +  +G  PD  +F+AVL A  +AG 
Sbjct: 255 FVQ-VPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGF 313

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
                K+   M   Y L    +HYTC++  +GRAG+L +A  +   MPF+P AAV+  LL
Sbjct: 314 TDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLL 373

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               IH   +MA    ++L++++P   + YV +ANV +   RWD VA VRK MK  +V K
Sbjct: 374 GACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVK 433

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
             G SWIEVK   H F +GD+ H     I+ KL EL ++ +  GYVP  +  LH+VG+ +
Sbjct: 434 TPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQ 493

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K + L +HSEKLA+A+GL+   P G  +R+ KNLR+C DCH + KYIS++  REI+VRD 
Sbjct: 494 KEQLLLWHSEKLAIAYGLIK-LPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDT 552

Query: 559 NRYHRFLNGSCTCGDLW 575
            R+H F +G C+C D W
Sbjct: 553 TRFHHFKDGHCSCADYW 569



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 26/269 (9%)

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL----- 208
           A+++F +I E D V Y  M+  + +NS +  + + F DM   D  S    ++G       
Sbjct: 26  AQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQM 85

Query: 209 -RAAAELAAMEQCRVIHGHAVVSG------LD-----------RNVIVGTGLIDGYGKAG 250
            +A      M    V+  +A++SG      LD           ++V+  T +I GY K G
Sbjct: 86  DKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLG 145

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A R+F E +   N + WNAM+AGY +       ++LF  +   G  P+  +  + L
Sbjct: 146 RIGLAERLF-EKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSAL 204

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
              C+   A +  + + ++  +  L       T LIS   + G LED  ++ + +P   D
Sbjct: 205 LG-CSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVP-RRD 262

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLID 399
              W A++S  A HG+   A  +   +I+
Sbjct: 263 VVTWNAMISGYAQHGEGKKALGLFDEMIE 291


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 202/567 (35%), Positives = 313/567 (55%), Gaps = 45/567 (7%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISA---HSNSPLSLNIFLSMLR 89
           S+ N LIT+YSK+  L  + R+F+ +    + VSW +++ A   H     +L ++L M  
Sbjct: 174 SVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEM-- 231

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
                 + +  TLAS+     ++    L GL  H+  +K   H     GS L+  YS+  
Sbjct: 232 -TVRGLIVDIFTLASVLTAFTNV-QDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCG 289

Query: 150 SPD-NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMRSSDVG-----STMY 202
               + +KVFDEI   D+V +  MI G++    L D +L  F  ++   VG      ++ 
Sbjct: 290 GCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQG--VGHRPDDCSLV 347

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIVSDARRVFDE 261
           CV   + A + +++  Q R +HG A+   +  N I V   LI  Y K G + DA+ +FD 
Sbjct: 348 CV---ISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFD- 403

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCNAGLAG 320
            +   N++++N+M+AGYAQ G     L LF  +LEM  F P   +F++VL A  + G   
Sbjct: 404 TMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEM-DFTPTNITFISVLAACAHTGRVE 462

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           + + +   MK ++ +EP   H++C+I  +GRAG+L +AER+   +PF+P    W ALL  
Sbjct: 463 DGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGA 522

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
             IHG  ++A K   RL+ ++P + + YV++AN+ S  GR  + A VRK+M+DR V+K+ 
Sbjct: 523 CRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKP 582

Query: 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP------------VWD 488
           G SWIEV  ++H+F+A D  H   + I   L E+M + +++GY P            VW 
Sbjct: 583 GCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVW- 641

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
                   RE+   L +HSEKLA++FGL+S    G+ + + KNLRIC DCH + KYIS V
Sbjct: 642 -------QREEELRLGHHSEKLAVSFGLMS-TREGEPILVFKNLRICVDCHNAIKYISEV 693

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
           V+REI VRD +R+H F +G C+CG  W
Sbjct: 694 VKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 198/410 (48%), Gaps = 23/410 (5%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHPT 92
           +N LI+ Y+K + +  + +LF+ +P P+ VS+  LI+A++   ++  +  +FL M R   
Sbjct: 77  FNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEM-REAF 135

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGL--SLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           L    +  TL+ +   C         GL   LH+LS+   L      G+AL+  YS+   
Sbjct: 136 LDM--DGFTLSGIITAC-----GINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGF 188

Query: 151 PDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
              A+++F  + E RD V + +M+V + Q+     +L ++ +M    +   ++ ++  L 
Sbjct: 189 LKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLT 248

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-AGIVSDARRVFDENLSVLNS 268
           A   +  +      H   + SG  +N  VG+GLID Y K  G + D R+VFDE +S  + 
Sbjct: 249 AFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDE-ISNPDL 307

Query: 269 IAWNAMMAGYAQQGDQS-TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
           + WN M++GY+   D S   LE F  L+  G  PD+ S + V++A  N     +  + + 
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQ-VH 366

Query: 328 RMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
            + ++  +    +     LI+   + G L DA+ +   MP E +   + ++++  A HG 
Sbjct: 367 GLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHGM 425

Query: 387 ADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
              +  + +R++  D  P  +  ++ V    +  GR ++      +MK +
Sbjct: 426 GFQSLHLFQRMLEMDFTP-TNITFISVLAACAHTGRVEDGKIYFNMMKQK 474



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 148/331 (44%), Gaps = 17/331 (5%)

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           PT ++L N   L  L+  C  LS A       H  ++        F  + L+  Y++   
Sbjct: 40  PTSTYLSNHFLL--LYSKCRRLSAARRVFDHTHDCNV--------FSFNTLISAYAKESY 89

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            + A ++FDE+ + D V Y  +I  +A+      +  +F +MR + +    + +SG + A
Sbjct: 90  VEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITA 149

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
                 +   R +H  +VV+GLD  V VG  LI  Y K G + +ARR+F       + ++
Sbjct: 150 CGINVGL--IRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVS 207

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA-GLAGESEKWIERM 329
           WN+M+  Y Q  + S  LEL+  + +RG   D ++  +VLTA  N   L G  +   + +
Sbjct: 208 WNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLI 267

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS-FSAIHGKAD 388
           K  Y     +   + LI    + G      R        PD  +W  ++S +S     +D
Sbjct: 268 KSGYHQNSHVG--SGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSD 325

Query: 389 MASKMGKRLIDINPY-DDSAYVIVANVLSGV 418
            A +  ++L  +    DD + V V +  S +
Sbjct: 326 EALECFRQLQGVGHRPDDCSLVCVISACSNM 356


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/570 (32%), Positives = 298/570 (52%), Gaps = 34/570 (5%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N++I  + K   +  + +LFN +   ++VSW+ALIS +  + +     +          +
Sbjct: 227 NSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIM 286

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
            ++  + S+   C+ L    + G  +H L +K+ +       +AL+H YS       A+K
Sbjct: 287 VDEVVVLSVLSACSRLL-VVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQK 345

Query: 157 VF-------------------------------DEIRERDVVCYGAMIVGFAQNSRLVDS 185
           +F                               D + ++D V + AMI G+AQ  R  ++
Sbjct: 346 LFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTET 405

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           L +F +M+          +   + A   LAA++Q + IH +   +GL  N+I+GT LI+ 
Sbjct: 406 LVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINM 465

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K G V DA  VF + L       WNA++ G A  G     L+ F  ++  G  P+E +
Sbjct: 466 YMKLGCVEDALEVF-KGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEIT 524

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           F+AVL A  + GL  E  +    M   +K+ P ++HY C++  +GRAG L++AE +  +M
Sbjct: 525 FVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESM 584

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           P  PD + W ALL     +G  +   ++G++L++++P  D   V+++N+ +  G W +V 
Sbjct: 585 PMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVL 644

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           EVR +M+   V K  G S IE  G+VH FLAGD+ H + E I   L E+ ++ +  GY P
Sbjct: 645 EVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAP 704

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
              E+  ++ + EK   L+ HSEKLA+AFGL++  P    +RIVKNLRIC DCH + K I
Sbjct: 705 DTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPP-TPIRIVKNLRICNDCHTAAKLI 763

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S+   REIVVRD +R+H F  GSC+C D W
Sbjct: 764 SKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 9/207 (4%)

Query: 81  LNIFLSMLRHPTLSFLPNQR--TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
           LN      + PT +  P      L +  + C ++     F   L  + L     D  F  
Sbjct: 6   LNYLSKPFKIPTFTLKPTLTLPILETHLQKCQNIKQ---FNQILSQMILSGFFKDS-FAA 61

Query: 139 SALVHFYSR--FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           S L+ F +   F + + + ++F  I   +      M+ G+ Q +    ++ V+  M  S+
Sbjct: 62  SRLLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESN 121

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V +  Y      ++ +   A    + I  H +  G D +V +   LI+ Y   G +SDAR
Sbjct: 122 VAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDAR 181

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGD 283
           +VFD + SVL+ ++WN+M+AGY   G+
Sbjct: 182 KVFDGS-SVLDMVSWNSMLAGYVLVGN 207



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/392 (20%), Positives = 164/392 (41%), Gaps = 55/392 (14%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAH--SNSPL-SLNIFLSMLRHPTLSFLPNQRTLASL 105
           ++ S ++F+HI +PN      ++  +   NSP  ++ ++  ML     +   +  T   L
Sbjct: 76  INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAA---DNYTYPIL 132

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
           F++C S+  A   G  +    LK+      +  + L++ Y+   +  +A+KVFD     D
Sbjct: 133 FQSC-SIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLD 191

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           +V + +M+ G+     + ++  V+  M                                 
Sbjct: 192 MVSWNSMLAGYVLVGNVEEAKDVYDRMP-------------------------------- 219

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
                  +RNVI    +I  +GK G V +A ++F+E +   + ++W+A+++ Y Q     
Sbjct: 220 -------ERNVIASNSMIVLFGKKGNVEEACKLFNE-MKQKDLVSWSALISCYEQNEMYE 271

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             L LF  +   G   DE   L+VL+A C+  L   + K +  + V+  +E  +     L
Sbjct: 272 EALILFKEMNANGIMVDEVVVLSVLSA-CSRLLVVITGKLVHGLVVKVGIETYVNLQNAL 330

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           I        +  A+++  +     D   W +++S     G+ + A    + L D  P  D
Sbjct: 331 IHMYSSCEEVVTAQKL-FSESCCLDQISWNSMISGYVKCGEIEKA----RALFDSMPDKD 385

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           +  V  + ++SG  + D   E   + ++ ++ 
Sbjct: 386 N--VSWSAMISGYAQQDRFTETLVLFQEMQIE 415


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 183/551 (33%), Positives = 308/551 (55%), Gaps = 17/551 (3%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D  + + L+  Y+K + +  +  +F  +   ++V +TALI  ++   L   +L IF  M+
Sbjct: 136 DGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMV 195

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                   PN+ TLA +   C +L    + G  +H L +K  L       ++L+  YSR 
Sbjct: 196 NRGVK---PNEYTLACILINCGNLGD-LVNGQLIHGLVVKSGLESVVASQTSLLTMYSRC 251

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              +++ KVF+++   + V + + +VG  QN R   ++S+F +M    +    + +S  L
Sbjct: 252 NMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSIL 311

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +A + LA +E    IH   +  GLD N   G  LI+ YGK G +  AR VFD  L+ L+ 
Sbjct: 312 QACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDV-LTELDV 370

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           +A N+M+  YAQ G     LELF  L+  G  P+  +F+++L A  NAGL  E  +    
Sbjct: 371 VAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFAS 430

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE----PDAAVWRALLSFSAIH 384
           ++  + +E  ++H+TC+I  +GR+ RLE+A     AM  E    PD  +WR LL+   IH
Sbjct: 431 IRNNHNIELTIDHFTCMIDLLGRSRRLEEA-----AMLIEEVRNPDVVLWRTLLNSCKIH 485

Query: 385 GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSW 444
           G+ +MA K+  +++++ P D   ++++ N+ +  G+W++V E++  ++D +++K    SW
Sbjct: 486 GEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSW 545

Query: 445 IEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALW 504
           ++V  +VH F+AGD  H R+ +I+  L  LM++ + LGY P    +L ++ + +K  +L+
Sbjct: 546 VDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLY 605

Query: 505 YHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF 564
           YHSEKLA+A+ L     R  T+RI KNLR+C DCH   K++S +  R+I+ RD  R+H F
Sbjct: 606 YHSEKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHF 665

Query: 565 LNGSCTCGDLW 575
             G C+C D W
Sbjct: 666 KGGLCSCKDYW 676



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 189/394 (47%), Gaps = 11/394 (2%)

Query: 8   QPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSW 67
           Q     + T  R VH   +KS  +   + + LI  Y K   L+ + +LF+ +PS +IV+W
Sbjct: 10  QSAHTKSLTTLRAVHTNVIKSGFSYSFLGHKLIDGYIKCGSLAEARKLFDELPSRHIVTW 69

Query: 68  TALIS---AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
            ++IS   +H  S  ++  + +ML       LP+  T +++ K  + L      G   H 
Sbjct: 70  NSMISSHISHGKSKEAVEFYGNMLME---GVLPDAYTFSAISKAFSQLG-LIRHGQRAHG 125

Query: 125 LSLKLSLHD-KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
           L++ L L     F  SALV  Y++F    +A  VF  + E+DVV + A+IVG+AQ+    
Sbjct: 126 LAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDG 185

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           ++L +F DM +  V    Y ++  L     L  +   ++IHG  V SGL+  V   T L+
Sbjct: 186 EALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLL 245

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
             Y +  ++ D+ +VF++ L   N + W + + G  Q G +   + +F  +     +P+ 
Sbjct: 246 TMYSRCNMIEDSIKVFNQ-LDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNP 304

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
           ++  ++L A C++    E  + I  + ++  L+        LI+  G+ G ++ A  +  
Sbjct: 305 FTLSSILQA-CSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFD 363

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            +  E D     +++   A +G    A ++ +RL
Sbjct: 364 VLT-ELDVVAINSMIYAYAQNGFGHEALELFERL 396



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 132/279 (47%), Gaps = 12/279 (4%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F G  L+  Y +  S   A+K+FDE+  R +V + +MI     + +  +++  + +M   
Sbjct: 36  FLGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLME 95

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD-RNVIVGTGLIDGYGKAGIVSD 254
            V    Y  S   +A ++L  +   +  HG AVV GL+  +  V + L+D Y K   + D
Sbjct: 96  GVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRD 155

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  VF   L   + + + A++ GYAQ G     L++F  +  RG  P+EY+   +L    
Sbjct: 156 AHLVFRRVLEK-DVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILI--- 211

Query: 315 NAGLAGE--SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
           N G  G+  + + I  + V+  LE  +   T L++   R   +ED+ ++   + +  +  
Sbjct: 212 NCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDY-ANQV 270

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDI----NPYDDSA 407
            W + +     +G+ ++A  + + +I      NP+  S+
Sbjct: 271 TWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSS 309


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 196/568 (34%), Positives = 315/568 (55%), Gaps = 21/568 (3%)

Query: 15  STDP-RIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           S DP R++ A  L  +  + D   YN +++ Y ++     +   F+ +P  +  SW  +I
Sbjct: 103 SKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMI 162

Query: 72  SAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           + ++       +  +F SM+    +S+      + S +  C  L  A  F         K
Sbjct: 163 TGYARRGEMEKARELFYSMMEKNEVSW----NAMISGYIECGDLEKASHF--------FK 210

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLS 187
           ++        +A++  Y + +  + A+ +F ++   +++V + AMI G+ +NSR  D L 
Sbjct: 211 VAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLK 270

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           +F  M    +      +S AL   +EL+A++  R IH     S L  +V   T LI  Y 
Sbjct: 271 LFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYC 330

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G + DA ++F E +   + +AWNAM++GYAQ G+    L LF  +      PD  +F+
Sbjct: 331 KCGELGDAWKLF-EVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFV 389

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           AVL A  +AGL      + E M   YK+EP  +HYTC++  +GRAG+LE+A ++  +MPF
Sbjct: 390 AVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPF 449

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            P AAV+  LL    +H   ++A    ++L+ +N  + + YV +AN+ +   RW++VA V
Sbjct: 450 RPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARV 509

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           RK MK+  V K  G SWIE++ KVH F + DR+H   + I+ KL EL ++ +  GY P  
Sbjct: 510 RKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPEL 569

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
           +  LHNV + +K + L +HSEKLA+AFG +   P+G  +++ KNLRIC DCH++ K+IS 
Sbjct: 570 EFALHNVEEEQKEKLLLWHSEKLAVAFGCIK-LPQGSQIQVFKNLRICGDCHKAIKFISE 628

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           + +REI+VRD  R+H F +GSC+CGD W
Sbjct: 629 IEKREIIVRDTTRFHHFKDGSCSCGDYW 656


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 192/594 (32%), Positives = 322/594 (54%), Gaps = 43/594 (7%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS--NS 77
           VH+  +K   ++D  + N LI  YS    L+ +  LF+     ++VS+  +I  ++  N 
Sbjct: 133 VHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQ 192

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS------------L 125
           P S       +++  +  LP++ T  +LF  C+ L+   + G  +H+            +
Sbjct: 193 PESALCLFGEMQNSGI--LPDEFTFVALFSVCSVLNEPNV-GKQIHAQVYKNLRSIDSNI 249

Query: 126 SLKLSLHDK-PFCG---------------------SALVHFYSRFRSPDNAKKVFDEIRE 163
            LK ++ D    CG                     S++V  Y+R    + A+K+F+ + E
Sbjct: 250 LLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHE 309

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           RDV+ + AMI G++Q  +  ++L +F +M +  +      +   L A A L A +  + +
Sbjct: 310 RDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRL 369

Query: 224 HGHAVVSGL-DRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQ 281
           +   + +G+ ++N I+   ++D Y K G +  A  +F     ++     +N+M+AG AQ 
Sbjct: 370 YHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQH 429

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
           G   T + +F  L   G  PDE +F+ VL A  ++GL  E +K  E M   Y ++P +EH
Sbjct: 430 GLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEH 489

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
           Y C++  +GR G LE+A  +   MPFE ++ +WRALLS    HG   +    G++L+++ 
Sbjct: 490 YGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEME 549

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMH 461
               + YV+++N+L+   +W+E  +VRKVM+D  +RK  G S+IE+ G +H F+A D+ H
Sbjct: 550 AQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSH 609

Query: 462 ERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAP 521
            + ++I   L ++    +  GYVP   +++ ++ + EK   + YHSEKLALAFGL+  +P
Sbjct: 610 PQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSP 669

Query: 522 RGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
              T+RIVKNLRIC DCH++FK +S +  REI VRD  R+H F NGSC+C D W
Sbjct: 670 T-DTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 190/429 (44%), Gaps = 58/429 (13%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASL 105
           L +S  LF+ I  PN+  W  +I  +S   N   ++ +++SM+        PN  T   L
Sbjct: 60  LDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAP--PNNFTFPFL 117

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
             +CA LS +   G  +HS  +K       F  +AL+H YS F + + A+ +FDE   RD
Sbjct: 118 LNSCARLS-SLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRD 176

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           +V Y  MI G+A+ ++   +L +F +M++S +    +         + L      + IH 
Sbjct: 177 LVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHA 236

Query: 226 HAV--VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD----------------------- 260
                +  +D N+++ + ++D Y K G+++ A RVF                        
Sbjct: 237 QVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGE 296

Query: 261 --------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
                    ++   + I+W AM++GY+Q G  S  LELF  +E  G  PDE + +AVL+A
Sbjct: 297 INVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSA 356

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA-----MGRAGRLEDA----ERIAM 363
               G    +    +R+  +Y +E G+ +   +++A       + G ++ A     R+  
Sbjct: 357 CARLG----AFDLGKRLYHQY-IENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGK 411

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            M       V+ ++++  A HG  + A  + + LI      D   V    VL   G    
Sbjct: 412 NM---KTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDE--VTFVGVLCACGHSGL 466

Query: 424 VAEVRKVMK 432
           + E +K+ +
Sbjct: 467 IEEGKKLFE 475



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 167/351 (47%), Gaps = 15/351 (4%)

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP--- 151
           FL    +   L ++C S       GL +H+ ++   LH + F  S L+ F+S   S    
Sbjct: 5   FLLENPSSLCLLESCKSFKQ----GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGL 60

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG-STMYCVSGALRA 210
           D+++ +F +I   ++  +  MI G++++    +++ ++  M +  +     +     L +
Sbjct: 61  DHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNS 120

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A L+++E    +H H +  G + ++ V   LI  Y   G ++ AR +FDE+L V + ++
Sbjct: 121 CARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESL-VRDLVS 179

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI--ER 328
           +N M+ GYA+     + L LF  ++  G  PDE++F+A L ++C+        K I  + 
Sbjct: 180 YNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVA-LFSVCSVLNEPNVGKQIHAQV 238

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
            K    ++  +   + ++    + G +  AER+   M     AA W +++   A  G+ +
Sbjct: 239 YKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEIN 298

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
           +A K+   +   +  D  ++  + +  S  G+  E  E+ K M+   ++ +
Sbjct: 299 VARKLFNHM---HERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPD 346


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 193/582 (33%), Positives = 311/582 (53%), Gaps = 44/582 (7%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           A+ +     +RSI   N++I  +    L+  + +LF+ +   ++V+W+ALI+    + + 
Sbjct: 298 AKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMY 357

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
                + +    +  + ++    S    CA+L      G  +HSLSLK+         +A
Sbjct: 358 EEAIRTFVGMHKIGVMVDEVVAVSALSACANLL-VVNMGKLIHSLSLKIGTESYINLQNA 416

Query: 141 LVHFYSRFRS-------------------------------PDNAKKVFDEIRERDVVCY 169
           L++ YS+                                   DNAK +FD + E+DVV +
Sbjct: 417 LIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSW 476

Query: 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
            +MI G+AQN    ++L++F +M+ S        +   + A A LAA+EQ + +H +   
Sbjct: 477 SSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKR 536

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVF----DENLSVLNSIAWNAMMAGYAQQGDQS 285
           +GL  NVI+GT LID Y K G V  A  VF    ++ +S      WNA++ G A  G   
Sbjct: 537 NGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIS-----TWNALILGLAMNGLVE 591

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
           + L++F  ++     P+E +F+ VL A  + GL  E +     M   +K++P ++HY C+
Sbjct: 592 SSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCM 651

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +  +GRAG+L++AE +   MP  PD A W ALL     HG ++M  ++G++LI++ P  D
Sbjct: 652 VDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHD 711

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             +V+++N+ +  G+WD+V E+R +M   RV K  G S IE  G +H FLAGD+ H   +
Sbjct: 712 GFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMD 771

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT 525
            I   L E+  + +  GY P  +E+L +V + EK   L+ HSEKLA+AFGL++ +P    
Sbjct: 772 AIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPP-TP 830

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           +RI+KNLRIC DCH + K IS+   R+IVVRD +R+H F  G
Sbjct: 831 IRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 89/181 (49%), Gaps = 10/181 (5%)

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           + +++  M S+ +G+  Y     ++A +   +  + + +H H +  G D +V V   LI+
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            +     ++DA RVF+E+ SVL+S++WN+++AGY + G+      ++H +  R       
Sbjct: 257 CFSVCSNMTDACRVFNES-SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASN- 314

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
              +++      GL  E+ K  + M     LE  +  ++ LI+   +    E+A R  + 
Sbjct: 315 ---SMIVLFGMRGLVVEACKLFDEM-----LEKDMVTWSALIACFQQNEMYEEAIRTFVG 366

Query: 365 M 365
           M
Sbjct: 367 M 367


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 177/525 (33%), Positives = 297/525 (56%), Gaps = 15/525 (2%)

Query: 60  PSPNIVSWTALISAHSNS----PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115
           PS +   +  LI A + +    P +L  + +M RH   +  PN+ T   + K CA +   
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRH---AVSPNKFTFPFVLKACAGMMRL 243

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFY-----SRFRSPDNAKKVFDEIRERDVVCYG 170
            L G ++H+  +K    + P   + LVH Y          P +AKKVFDE   +D V + 
Sbjct: 244 ELGG-AVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWS 302

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           AMI G+A+      ++++F +M+ + V      +   L A A+L A+E  + +  +    
Sbjct: 303 AMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERK 362

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
            + R+V +   LID + K G V  A +VF E + V   ++W +M+ G A  G     + +
Sbjct: 363 NIMRSVELCNALIDMFAKCGDVDRAVKVFRE-MKVRTIVSWTSMIVGLAMHGRGLEAVLV 421

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           F  +  +G  PD+ +F+ VL+A  ++GL  +   +   M+  + + P +EHY C++  + 
Sbjct: 422 FDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLS 481

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           RAGR+ +A     AMP EP+  +WR++++     G+  +   + K LI   P  +S YV+
Sbjct: 482 RAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVL 541

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
           ++N+ + + RW++  +VR++M  + +RK  G + IE+  +++ F+AGD+ H++ ++IY  
Sbjct: 542 LSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEM 601

Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
           + E+  E +R GYVP   ++L ++ + +K +AL+ HSEKLA+AF L+S  P G  +RIVK
Sbjct: 602 VEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPP-GTPIRIVK 660

Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           NLR+C DCH + K+IS+V  REIVVRD NR+H F NG C+CGD W
Sbjct: 661 NLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 20/317 (6%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF---DEIR---ERDVVCYGAMIVG 175
           +HSL LKL LH  P   +      S F +   A  V    D+       D   +  +I  
Sbjct: 141 IHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIRA 200

Query: 176 FAQNSR-LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           FAQ +     +L  +  MR   V    +     L+A A +  +E    +H   V  G + 
Sbjct: 201 FAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEE 260

Query: 235 NVIVGTGLIDGY------GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
           +  V   L+  Y      G +G VS A++VFDE+  V +S+ W+AM+ GYA+ G+ +  +
Sbjct: 261 DPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDES-PVKDSVTWSAMIGGYARAGNSARAV 318

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
            LF  +++ G  PDE + ++VL+A  + G A E  KW+E    R  +   +E    LI  
Sbjct: 319 TLFREMQVTGVCPDEITMVSVLSACADLG-ALELGKWLESYIERKNIMRSVELCNALIDM 377

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDS 406
             + G ++ A ++   M      + W +++   A+HG+   A  +   +++  ++P DD 
Sbjct: 378 FAKCGDVDRAVKVFREMKVRTIVS-WTSMIVGLAMHGRGLEAVLVFDEMMEQGVDP-DDV 435

Query: 407 AYVIVANVLSGVGRWDE 423
           A++ V +  S  G  D+
Sbjct: 436 AFIGVLSACSHSGLVDK 452


>gi|302800080|ref|XP_002981798.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
 gi|300150630|gb|EFJ17280.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
          Length = 483

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 170/478 (35%), Positives = 273/478 (57%), Gaps = 3/478 (0%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           ++ T  S+ + CA L    L G  LH   + L        G+ L++ YSR   PD A +V
Sbjct: 9   DRSTFTSVIEACACLPDLTL-GQLLHYRMITLGCELDTVLGTNLINMYSRCDVPDKAIEV 67

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           FD +  + VV + AMI   +Q  + +++L +F  M    V +     S  L   A LAA+
Sbjct: 68  FDAMHNKSVVVWTAMIAAHSQQGQGLEALELFKRMDIEGVRADKVAFSLVLDVCANLAAL 127

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
            Q R++H     + L+++++V   L++ YGK G +++AR+VF E ++  + ++W +++A 
Sbjct: 128 AQARILHATVAGTELEQDMVVKNTLVNMYGKCGKLNEARQVF-EKMASKDMVSWTSIIAA 186

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           YAQQG  S   ELFH ++  G A D   F+ V++   +AGL  ++  W   M   Y L P
Sbjct: 187 YAQQGSASAAFELFHAMQQAGEAIDTVIFVKVMSGCNHAGLLKDARNWFVSMLQDYGLSP 246

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
             E+Y C++  +GR G+L+D E +   M  EPD   W + L+   +H       +  +RL
Sbjct: 247 VNENYACILDLLGRLGQLQDVEDLLENMTLEPDFIAWMSFLNACKVHKDMKRGVRAAQRL 306

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
           + +N  + ++YV+++++ +  G++D  A++R+ +     +K  G SWIE+K KVH F +G
Sbjct: 307 VQLNRRNSASYVLLSDIHAVCGKFDAAAKLRRRIGRDCGKKVPGLSWIEIKDKVHKFASG 366

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
            R H R ++I+ +L  L       GYVP  + +L +V + EK + L YHSEK A+AFGL+
Sbjct: 367 SRTHPRNDEIFAELQRLGVLMREAGYVPDTEVVLMDVEEEEKEQVLCYHSEKQAMAFGLI 426

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S  P G  LR+VKNLR+C DCH + K+IS++  R+I VRD NR+H F +G C+C D W
Sbjct: 427 S-TPSGTPLRVVKNLRVCTDCHTATKFISKITGRQITVRDANRFHEFKDGFCSCKDYW 483


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 191/534 (35%), Positives = 287/534 (53%), Gaps = 21/534 (3%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLN--IFLSMLRHP-----TLSFLPNQRT 101
           L Y+  +  HIP P+   + AL+   +  P   +   FLS + HP     + S + + R 
Sbjct: 54  LPYAAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFLSTILHPDALTFSFSLIASARA 113

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           LA L +T             +HS  L+   H     G+ L+  Y++    D+A++VFDEI
Sbjct: 114 LA-LSETS-----------QIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEI 161

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
             RDV  + A+I G AQ S+  ++L++F  MR+         V GAL A ++L A+    
Sbjct: 162 PLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGE 221

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
            +H       LD NV V   +ID Y K G      RVF       + + WN M+  +A  
Sbjct: 222 GVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMH 281

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
           GD    LELF  +       D  ++LAVL A  +AGL  E  +  + M  R  +   ++H
Sbjct: 282 GDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVNRNVKH 340

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
           Y  ++  +GRAGRL +A RI  +MP  PD  +W++LL     +G  +MA    ++L+++ 
Sbjct: 341 YGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMG 400

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMH 461
                 +V+++NV +   RW++V  VR+ MK R VRK  G S+IEV+G +H F+ GD+ H
Sbjct: 401 SNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSH 460

Query: 462 ERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAP 521
               +IY KL E+    +  GYV     +LH++G+ +K  AL +HSEKLA+AFGL+S   
Sbjct: 461 PDWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLIS-TS 519

Query: 522 RGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            G  +R+ KNLRIC DCH   K IS++ ++EI+VRD  R+HRF +GSC+C D W
Sbjct: 520 EGTPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 112/265 (42%), Gaps = 3/265 (1%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H+  L+    AD  +   LI  Y+K   L  + R+F+ IP  ++ +W ALI+  +    
Sbjct: 122 IHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSK 181

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           S        R        N+ ++      C+ L  A   G  +H+   K+ L       +
Sbjct: 182 SSEALALFNRMRAEGEKINEISVLGALAACSQLG-ALRAGEGVHACVRKMDLDINVQVCN 240

Query: 140 ALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           A++  Y++    D   +VF  +   + VV +  MI+ FA +     +L +F +M  + V 
Sbjct: 241 AVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVE 300

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                    L A      +E+   +    V  G++RNV     ++D  G+AG + +A R+
Sbjct: 301 MDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRI 360

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGD 283
            +    V + + W +++      G+
Sbjct: 361 INSMPIVPDVVLWQSLLGACKTYGN 385


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 196/550 (35%), Positives = 312/550 (56%), Gaps = 9/550 (1%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS--NSPLSLNIFLSML 88
           A   + N L+  Y +   L ++ R+F  I    + SW  LISAH+  N+  ++ +F+ M 
Sbjct: 306 ASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVSSWNTLISAHAQQNTAAAIELFIQMT 365

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               L   P+  ++ SL   CA   H  L   + H   L+  L       ++L+  Y R 
Sbjct: 366 NACGLK--PDGFSIGSLLMACADPKH-LLHVKATHGFILRNGLERDTVIRASLLSAYIRC 422

Query: 149 -RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV-GSTMYCVSG 206
            R+   A+ +FD + E+  V + AMI G++QN    +SL +F +M+S +   S++   + 
Sbjct: 423 SRTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGESLQLFREMQSVEGHCSSVISATS 482

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           AL A +EL+++   + +H  A+ + L  +  + + LID Y K G V DAR  FD   +  
Sbjct: 483 ALMACSELSSVRLGKEMHCFALKADLCDDPFLSSSLIDMYSKCGFVEDARTFFDRLKARD 542

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
             ++W AM+ GYA  G     +EL+  +   G  PDE+++L +L A  +AG+  E  ++ 
Sbjct: 543 AKVSWTAMITGYAVNGLGREAVELYGKMRREGMEPDEFTYLGLLMACGHAGMLEEGLRFF 602

Query: 327 ERMKVRY-KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           + M+  + K+E  LEHY+C+I  + RAGR  DA  +   MP EPDA +  ++LS   IHG
Sbjct: 603 DEMRNHHHKIEVKLEHYSCVIGMLSRAGRFADAVALMAEMPQEPDAKILSSVLSACHIHG 662

Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445
           +A++ S + +RL+++ P     YV+ +N+ +G  RWD++ +VRK+++D  + KE G SWI
Sbjct: 663 EAELGSDVAERLLELEPDKAEHYVLASNMYAGSRRWDDMRKVRKMLRDAGIAKEPGCSWI 722

Query: 446 EVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWY 505
           +V GKV+ F+AG+  H   E +      L E    +GYVP    +LH + + EK EALW+
Sbjct: 723 DVAGKVYSFVAGENPHPEMEQVRGMWRSLEERIREIGYVPDTTVVLHELEEEEKVEALWW 782

Query: 506 HSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFL 565
           HSEK A+ FGL+  A    T+R+ KN+R+C+DCH + + IS+V  R+IVVRD  R+H F 
Sbjct: 783 HSEKQAVTFGLLRTATPA-TVRVFKNIRMCKDCHNAARLISKVTGRDIVVRDKKRFHHFR 841

Query: 566 NGSCTCGDLW 575
            G C+CGD W
Sbjct: 842 GGICSCGDYW 851



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 144/308 (46%), Gaps = 22/308 (7%)

Query: 67  WTALISAHSNSPLSLNIFLSMLRHPTLS--FLPNQRTLASLFKTCASLS-HAFLFGLSLH 123
           W AL++ HS +    +    +      S    P++ TL    ++C  L   A   G  +H
Sbjct: 32  WNALLADHSRAGRHADALALLPPLLAASEGIAPDRFTLPPAARSCGFLRVGAAAAGRQVH 91

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGFAQNSR 181
           +L+ KL L   PF G++LV  Y R    ++A+KVF  I +  R++V + A++   + + R
Sbjct: 92  ALAAKLGLPGDPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSWNALMAALSGDPR 151

Query: 182 LVDSLSVFADMRSSDVG----STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
               L +F D   +  G    +T+  V   L   A L   E  R +HG A  SG D    
Sbjct: 152 --RGLELFRDCLVAVGGMVDEATLVTV---LPMCAALGWSETGRAVHGLAAKSGWDAPAR 206

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           VG  L+D Y K G ++DA R F E  SV   ++WN M+  Y +  +      L   ++++
Sbjct: 207 VGNALVDMYAKCGELADAERAFPEAPSV---VSWNVMLGAYTRNREAGAAFGLLRDMQIK 263

Query: 298 --GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY-TCLISAMGRAG 353
             G  P DE + L+VL A C+        + +    VR  L+   +     L++A GR G
Sbjct: 264 EHGSVPADEITVLSVLPA-CSGPTELSRLRELHAFTVRRGLDAASDKVPNALVAAYGRCG 322

Query: 354 RLEDAERI 361
           RL  A+R+
Sbjct: 323 RLLHADRV 330


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 185/576 (32%), Positives = 314/576 (54%), Gaps = 22/576 (3%)

Query: 13  NTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           N  +  + +H   +K     D  +   L+  Y+K+  L  +++LF   P+ N+V + A+I
Sbjct: 227 NMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMI 286

Query: 72  SAHSNSP--------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           +    +          +L +F  M R       P+  T +S+ K C  +  AF +G  +H
Sbjct: 287 AGFIQTEDIDKECAYEALKLFSQMQRQ---GIKPSDFTFSSIIKICNHIE-AFEYGKQIH 342

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
           +   K ++    F GS L+  YS   S ++  K F+   + D+V +  MI G+AQN +  
Sbjct: 343 AHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFE 402

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
            +L++F ++ +S      + ++  L A A++AA      +HG+AV +G+    IV    I
Sbjct: 403 SALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQI 462

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
             Y K+G +  A+  F+E +   + ++W+ M+   AQ G     + LF L++  G  P++
Sbjct: 463 SMYAKSGNLDSAKITFEE-IKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQ 521

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            +FL VLTA  + GL  E  ++ E MK  Y ++  ++H TC++  + RAGRL DA+   +
Sbjct: 522 ITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFIL 581

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
              F     +WR LLS   I+        + ++LI+++P + S+YV++ N+ +  G    
Sbjct: 582 NSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLP 641

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
             ++R++MKDR +RKE G+SWIEV  +VH F+ GD  H  ++ IY KL  ++E+  ++GY
Sbjct: 642 ATKIRELMKDRGIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEGMLEKKRKIGY 701

Query: 484 VPVWDEMLHNV--GDREKREALW--YHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCH 539
           +   D+ + NV    +E +  L   +HSEKLA++FG+VS  P    ++++KNLR+C DCH
Sbjct: 702 I---DQKIQNVTISTKEVKGTLGVNHHSEKLAVSFGIVS-LPPSAPVKVMKNLRVCHDCH 757

Query: 540 ESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + K IS V +REI++RD  R+H F  GSC+C D W
Sbjct: 758 ATMKLISVVEKREIILRDSLRFHHFKEGSCSCNDYW 793



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 168/376 (44%), Gaps = 10/376 (2%)

Query: 19  RIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +++H  A+      +    NL+ + Y K   + ++  LF      + VSW +LI+ ++  
Sbjct: 130 KVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARV 189

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTC-ASLSHAFLFGLSLHSLSLKLSLHDKPF 136
                +   +++        N  TL S  K+C  +L++   +G +LH  ++K  L     
Sbjct: 190 GAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIV 249

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL-----VDSLSVFAD 191
            G+AL+  Y++     +A ++F     ++VV Y AMI GF Q   +      ++L +F+ 
Sbjct: 250 VGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQ 309

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+   +  + +  S  ++    + A E  + IH H     +  +  +G+ LI+ Y   G 
Sbjct: 310 MQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGS 369

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
             D  + F+     L+ ++W  M+AGYAQ G   + L LF+ L   G  PDE+    +L+
Sbjct: 370 TEDQLKCFNST-PKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLS 428

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A C    A  S + +    V+  +          IS   ++G L D+ +I       PD 
Sbjct: 429 A-CADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNL-DSAKITFEEIKNPDV 486

Query: 372 AVWRALLSFSAIHGKA 387
             W  ++  +A HG A
Sbjct: 487 VSWSVMICSNAQHGHA 502



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 185/397 (46%), Gaps = 18/397 (4%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           L Q      +S   ++ HA  +K++      + NN +  YSK   +  + +LF+ +   +
Sbjct: 15  LVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERS 74

Query: 64  IVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
           ++S+  LIS +        ++ +F S  R   L    ++ + A +   C  +   F  G 
Sbjct: 75  VISYNILISGYGGMGFYHKAIGLF-SEARMACLKL--DKFSYAGVLSACGQIKD-FALGK 130

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            +H L++   L  + F  + L+  Y +    D+A+ +F+   E D V + ++I G+A+  
Sbjct: 131 VIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVG 190

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAA-AELAAM-EQCRVIHGHAVVSGLDRNVIV 238
              + L +   M  + +    + +  AL++    L  M    + +HG+ V  GLD +++V
Sbjct: 191 AYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVV 250

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-----QSTVLELFHL 293
           GT L+D Y K G + DA ++F  + +  N + +NAM+AG+ Q  D         L+LF  
Sbjct: 251 GTALLDMYAKTGYLGDAIQLFRTSPN-QNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQ 309

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           ++ +G  P +++F +++  +CN   A E  K I     ++ ++      + LI      G
Sbjct: 310 MQRQGIKPSDFTFSSIIK-ICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLG 368

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             ED  +   + P + D   W  +++  A +G+ + A
Sbjct: 369 STEDQLKCFNSTP-KLDIVSWTTMIAGYAQNGQFESA 404


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 206/625 (32%), Positives = 323/625 (51%), Gaps = 75/625 (12%)

Query: 21  VHARALKSS-QADRSIYNNLITN--YSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHS 75
           +HA+  K+    D  ++  L+ +   + S+ L Y+LRLF+H P+P+      LI   + S
Sbjct: 21  IHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIRSLSLS 80

Query: 76  NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +PL SL+ F+ + R PTLS  P+  T A   K  A+  H    G+ LHS + +      
Sbjct: 81  QTPLSSLHPFIQLRRQPTLS--PDSFTFAFALKAVANSRH-LRPGIQLHSQAFRHGFDAH 137

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA----------------------- 171
            F G+ L+  Y+      +A++VFDE+ E +VV + A                       
Sbjct: 138 IFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPV 197

Query: 172 --------MIVGFAQNSRLVDSLSVFADM--RSSDVGSTMYC------------------ 203
                   M+ G+A+   L  +  VF +M  R     STM                    
Sbjct: 198 RNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFREL 257

Query: 204 -----------VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
                      ++G L A A+  A E  +++HG    +G      V   LID Y K G V
Sbjct: 258 LREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNV 317

Query: 253 SDARRVFDENLSVLNSI-AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + AR VF +N+ V  SI +W +++AG A  G     ++LFH +E  G  PD  +F+++L 
Sbjct: 318 AMARLVF-QNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLY 376

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  ++GL  E      +MK  Y +EP +EHY C++   GRA RL+ A      MP  P+A
Sbjct: 377 ACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNA 436

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            +WR LL   +IHG  +MA  +  RL +++P +   +V+++NV +  G+W +V+ +R+ M
Sbjct: 437 IIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTM 496

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE-RLGYVPVWDEM 490
            +  ++K  G S IE+   ++ F+AG++ +E TE+ + KL E+M       GY P    +
Sbjct: 497 TEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSV 556

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           LH++ + EK +++  HSEKLA AFG ++  P+G+ LRIVKNLR+C DCH   K IS+V +
Sbjct: 557 LHDIEEEEKEDSVSKHSEKLAAAFG-IAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQ 615

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
            EI+VRD +R+H F +G C+C D W
Sbjct: 616 VEIIVRDRSRFHSFKDGFCSCRDYW 640



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 102/255 (40%), Gaps = 17/255 (6%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYSRFRSPDN-AKKVFDEI 161
           SL   C+SL         +H+   K  LH  P   G  L+H         + A ++F   
Sbjct: 7   SLLSKCSSLKPT----KQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHF 62

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSDVGSTMYCVSGALRAAAELAAMEQC 220
              D   +  +I   + +   + SL  F  +R    +    +  + AL+A A    +   
Sbjct: 63  PNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPG 122

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
             +H  A   G D ++ VGT LI  Y + G    ARRVFDE +S  N + WNA++    +
Sbjct: 123 IQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDE-MSEPNVVTWNAVLTAAFR 181

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE---- 336
            GD     ++F  + +R       S+  +L     AG  G + +    M +R ++     
Sbjct: 182 CGDVEGAQDVFGCMPVRNLT----SWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTM 237

Query: 337 -PGLEHYTCLISAMG 350
             G  H  C   A G
Sbjct: 238 IVGFAHNGCFDEAFG 252


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 179/560 (31%), Positives = 303/560 (54%), Gaps = 10/560 (1%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HS 75
           ++H+   K+    D  +  N++  YSK   L  + ++F+ +   N+VSWT +I       
Sbjct: 125 MIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFG 184

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               ++++F  +L        P+   +  + + CA L      G  +     +  L    
Sbjct: 185 KFREAVDLFRGLLES---GLRPDGFVIVRVLRACARLGD-LESGRWIDRCMRECGLSRNV 240

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  ++LV  Y++  S + A+ VFD + E+D+VC+ AMI G+A N    +++ +F +MR  
Sbjct: 241 FVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKV 300

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           +V    Y + GAL + A L A+E      G         N ++GT LID Y K G + +A
Sbjct: 301 NVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEA 360

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             V+ + +   + + +NA+++G A  G       +F  +   G  P+E++F+ +L    +
Sbjct: 361 LGVY-KMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTH 419

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  +   +   M   + + P +EHY C++  + RAG L++A  +   MP + +  VW 
Sbjct: 420 AGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWG 479

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           +LL    +H +  +A  + K+LI++ P++   YV+++N+ S   RWDE  ++R  + ++ 
Sbjct: 480 SLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKG 539

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           ++K  G SW+EV G VH FL GD  H  ++ IY KL  L ++ +  GY P  + +L +V 
Sbjct: 540 MQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVE 599

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + EK   L  HSEKLA+AF L+S   +   +R+VKNLR+C DCHE+ K+IS+V  REIV+
Sbjct: 600 EEEKEHFLGCHSEKLAVAFALISTGAK-YVIRVVKNLRVCGDCHEAIKHISKVTGREIVI 658

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H F +G+C+C D W
Sbjct: 659 RDNNRFHCFSDGACSCRDYW 678



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 172/366 (46%), Gaps = 15/366 (4%)

Query: 46  SNLLSYSLRLFNHIPS-PNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRT 101
           SN   Y + +F+  P+  N   +  +I    +      +++++ SM +    + +P+  T
Sbjct: 50  SNNAQYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHK---AAIVPDSFT 106

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
            + + K CA L+  F  G+ +HSL  K       F  + +V FYS+     +A KVFD++
Sbjct: 107 FSFVLKACARLN-LFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDM 165

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
             ++VV +  MI G  +  +  +++ +F  +  S +    + +   LRA A L  +E  R
Sbjct: 166 VVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGR 225

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
            I       GL RNV V T L+D Y K G + +AR VFD  +   + + W+AM+ GYA  
Sbjct: 226 WIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFD-GMVEKDIVCWSAMIQGYASN 284

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
           G     +ELF  +      PD Y+ +  L++  + G A E   W + +    +       
Sbjct: 285 GLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLG-ALELGNWAKGLMNYEEFLSNPVL 343

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA----SKMGKRL 397
            T LI    + G +E+A  +   M  E D  V+ A++S  A++G+   A     +MGK  
Sbjct: 344 GTSLIDFYAKCGSMEEALGVYKMMK-EKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFG 402

Query: 398 IDINPY 403
           I  N +
Sbjct: 403 IPPNEH 408


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 182/558 (32%), Positives = 303/558 (54%), Gaps = 24/558 (4%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           AR L     +R ++  N ++T Y ++  L  +  LF  +P  +IVSW A++S ++ +   
Sbjct: 14  ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFV 73

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +  IF  M   P  + +     LA+  +         LF   +    +  +       
Sbjct: 74  DEAREIFYKM---PLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWN------- 123

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
              L+  + R R     + +FD + +RD + + AMI G++QN    ++L  F +M+    
Sbjct: 124 --CLMGGFVRKR-----RNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCE 176

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                  + AL   + +AA+E  R +H   V +G      VG  L+  Y K G + +AR 
Sbjct: 177 RLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARD 236

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            F E L   + ++WN M+ GYA+ G     L +F L++  G  PD+ + ++VL A  +AG
Sbjct: 237 AFQEILEK-DVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAG 295

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  +  ++   M   Y +   L HYTC++  +GRAG+LE+A+ +   MPFEPDAA W AL
Sbjct: 296 LVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGAL 355

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L  S IHG  ++  K  + + ++ P++   Y++++ + +  GRW +  ++R  M+++ V+
Sbjct: 356 LGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVK 415

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K  G SW+EV+ K+H F  GD  H  T+ IYT L E+  + ++ GY+   + + H+V + 
Sbjct: 416 KVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEE 475

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           EK   L YHSEKLA+A+G++   P G+ +R++KNLR+C DCH + KYIS++V R I++RD
Sbjct: 476 EKVHMLKYHSEKLAVAYGILY-IPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRD 534

Query: 558 VNRYHRFLNGSCTCGDLW 575
            +R+H F  GSC+C D W
Sbjct: 535 NHRFHYFEGGSCSCRDFW 552



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 151/330 (45%), Gaps = 32/330 (9%)

Query: 17  DPRIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           + RI  A+ L  S+ D ++  +N L+  + +         LF+++P  + +SW+A+I+ +
Sbjct: 101 NGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRR-----NLFDNMPQRDSISWSAMIAGY 155

Query: 75  SNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           S +  S   L+ F+ M R        N+ +      TC++++ A   G  LH   +K   
Sbjct: 156 SQNGCSEEALHFFVEMQRDCER---LNRSSFTCALSTCSNIA-ALELGRQLHCRLVKAGY 211

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               + G+AL+  Y +  S D A+  F EI E+DVV +  MI G+A++    ++L+VF  
Sbjct: 212 QTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFEL 271

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           M+++ +      +   L A +    ++Q     +      G+   ++  T ++D  G+AG
Sbjct: 272 MKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAG 331

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMA-----GYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
            + +A+ +        ++  W A++      G  + G+++  +    + EM       Y 
Sbjct: 332 QLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQI----IFEMEPHNSGMYI 387

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKL 335
            L+ L A         S +W +  K+R ++
Sbjct: 388 LLSKLYA--------ASGRWSDAGKMRLEM 409



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 136/311 (43%), Gaps = 24/311 (7%)

Query: 123 HSLSLKLSLHDKP-----FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
           H   L   L DK      F  + ++  Y R R    A+ +F+ + ERD+V + AM+ G+A
Sbjct: 9   HKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYA 68

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN  + ++  +F  M   +  S     +G L A  +   +E  + +      S +D  ++
Sbjct: 69  QNGFVDEAREIFYKMPLKNGISW----NGLLAAYVQNGRIEDAKRL----FESKMDWTLV 120

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
               L+ G+     V   R +FD N+   +SI+W+AM+AGY+Q G     L  F  ++  
Sbjct: 121 SWNCLMGGF-----VRKRRNLFD-NMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRD 174

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
               +  SF   L+  C+   A E  + +    V+   + G      L++   + G +++
Sbjct: 175 CERLNRSSFTCALST-CSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDE 233

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYVIVANVL 415
           A R A     E D   W  ++   A HG  + A  + +  +   I P DD+  V V    
Sbjct: 234 A-RDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRP-DDATMVSVLAAC 291

Query: 416 SGVGRWDEVAE 426
           S  G  D+ +E
Sbjct: 292 SHAGLVDQGSE 302


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 191/564 (33%), Positives = 296/564 (52%), Gaps = 17/564 (3%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R + AR + S  A  SI  N LI  YSK   L  + ++F+ + + ++++W  +IS ++  
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +        R       PN  T   L   C +L      G ++H    +         
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLED-LEQGRAIHRKVKEHGYESDLVI 301

Query: 138 GSALVHFYSRFRSP-DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           G+ L++ Y++  S  + A++VF+ +R RDV+ +  +IV + Q  +  D+L +F  M+  +
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      +S  L A A L A  Q + +H          +V++   L++ Y + G + D  
Sbjct: 362 VAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTV 421

Query: 257 RVF----DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            VF    D++L     ++W+ ++A YAQ G   T LE F  L   G A D+ + ++ L+A
Sbjct: 422 GVFAAIRDKSL-----VSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSA 476

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  E  +    M   + L P   H+ C++  + RAGRLE AE +   MPF PDA 
Sbjct: 477 CSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAV 536

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDD-SAYVIVANVLSGVGRWDEVAEVRKVM 431
            W +LLS   +H     A+++  +L ++   D+ S   +++NV +  GRWD   +VRK  
Sbjct: 537 AWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD---DVRKTR 593

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
             R  RK  G S+IE+   VH F+AGD+ H   E I  ++  L ++ +  GYVP    +L
Sbjct: 594 NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVL 653

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           HNV + EK + L YHSEKLA+A+GL+S  P G  L IVKNLR C DCH + K+ISR+V R
Sbjct: 654 HNVKEEEKEQMLCYHSEKLAIAYGLIS-TPPGTPLHIVKNLRACVDCHAAAKFISRIVGR 712

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           +IVVRD  R+H F NGSC+C D W
Sbjct: 713 KIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 175/373 (46%), Gaps = 10/373 (2%)

Query: 19  RIVHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +++HA  L++   + D  +   LIT Y++   L  + + F+ +    +V+W ALI+ +S 
Sbjct: 78  QLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSR 137

Query: 77  SP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +     +L I+  M+        P+  T +S    C S+      G  + + ++      
Sbjct: 138 NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYAC-SVVGDISQGREIEARTVASGYAS 196

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                +AL++ YS+  S ++A+KVFD ++ RDV+ +  MI G+A+      +L +F  M 
Sbjct: 197 DSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMG 256

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-AGIV 252
            +D    +    G L A   L  +EQ R IH      G + ++++G  L++ Y K +  +
Sbjct: 257 PNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSL 316

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +AR+VF E L   + I WN ++  Y Q G     L++F  +++   AP+E +   VL+A
Sbjct: 317 EEARQVF-ERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSA 375

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            C    A    K +  +    + +  +     L++   R G L+D   +  A+  +    
Sbjct: 376 -CAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR-DKSLV 433

Query: 373 VWRALLSFSAIHG 385
            W  L++  A HG
Sbjct: 434 SWSTLIAAYAQHG 446



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 180/386 (46%), Gaps = 23/386 (5%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
           Y K   ++ +L +F+ I  PN VSWT +++A + +           R       P+    
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHD-KPFCGSALVHFYSRFRSPDNAKKVFDEI 161
                 C+S S     G  LH++ L+  L +     G+AL+  Y+R R  + A+K FDE+
Sbjct: 62  VVAIGVCSS-SKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD---VGSTMYCVSGALRAAAELAAME 218
            ++ +V + A+I G+++N     +L ++ DM S     +       S AL A + +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           Q R I    V SG   + IV   LI+ Y K G +  AR+VFD  L   + IAWN M++GY
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDR-LKNRDVIAWNTMISGY 239

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A+QG  +  LELF  +      P+  +F+ +LTA C      E  + I R    +  E  
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTA-CTNLEDLEQGRAIHRKVKEHGYESD 298

Query: 339 LEHYTCLISAMGR-AGRLEDAERIAMAMPFE----PDAAVWRALLSFSAIHGKADMASKM 393
           L     L++   + +  LE+A ++     FE     D   W  L+     +G+A  A  +
Sbjct: 299 LVIGNVLLNMYTKCSSSLEEARQV-----FERLRTRDVITWNILIVAYVQYGQAKDALDI 353

Query: 394 GK--RLIDINPYDDSAYVIVANVLSG 417
            K  +L ++ P +    + ++NVLS 
Sbjct: 354 FKQMQLENVAPNE----ITLSNVLSA 375


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 191/566 (33%), Positives = 313/566 (55%), Gaps = 24/566 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+K+   +D  + N+L+  Y+K   + Y   +F+ +P  ++VSWT +I+ H+ +  
Sbjct: 405 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNG- 463

Query: 80  SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLS--------HAFLFGLSLHSLSLKLS 130
           S +  L + R   L  +  +   ++S+   C+ L         H+++    L  L L+  
Sbjct: 464 SHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQ-- 521

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                   + +V  Y    + D A ++F+ I  +DVV + +MI  +  N    ++L +F 
Sbjct: 522 --------NGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFH 573

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            M+ + V      +   L AAA L+A+++ + IHG  +  G      + + L+D Y + G
Sbjct: 574 LMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCG 633

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  +R VF+  +   + + W +M+  Y   G     ++LF  +E    APD  +F+AVL
Sbjct: 634 TLEKSRNVFN-FIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVL 692

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  ++GL  E  +++E MK  Y+LEP  EHY CL+  +GRA  LE+A +    M  EP 
Sbjct: 693 YACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPT 752

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A VW ALL    IH   ++     ++L++++P +   YV+V+NV S   RW +V  VR  
Sbjct: 753 AEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMR 812

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL-GYVPVWDE 489
           MK   ++K  G SWIEV  KVH F+A D+ H ++ +IY+KL+++ E+  +  GYV     
Sbjct: 813 MKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKF 872

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +LHN  + EK + L+ HSE+LA+A+G+++  P G +LRI KNLR+C DCH   K IS+  
Sbjct: 873 VLHNAKEEEKVQMLYGHSERLAIAYGMLT-TPEGASLRITKNLRVCGDCHNFCKLISKFF 931

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
           ERE+V+RD NR+H F  G C+CGD+W
Sbjct: 932 ERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 182/376 (48%), Gaps = 15/376 (3%)

Query: 21  VHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSP 78
           VH  A+K        + N+++  Y+K N L+ + +LF+ +P   ++VSW ++ISA+S++ 
Sbjct: 202 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 261

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
            S+            S  PN  T  +  + C   S     G+ +H+  LK S +   F  
Sbjct: 262 QSIEALRLFGEMQKASLAPNTYTFVAALQACED-SSFIKQGMFIHATVLKSSYYINVFVA 320

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS--- 195
           +AL+  Y+RF     A  +F  + + D + + +M+ GF QN    ++L  + +MR +   
Sbjct: 321 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 380

Query: 196 -DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            D+ + +  ++ + R+   L  M+    IH +A+ +GLD ++ VG  L+D Y K   +  
Sbjct: 381 PDLVAVISIIAASARSGNTLHGMQ----IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKY 436

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
              +FD+ +   + ++W  ++AG+AQ G  S  LELF  +++ G   D     ++L A C
Sbjct: 437 MDCIFDK-MPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLA-C 494

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +      S K I    +R  L   L     ++   G  G ++ A R+   + F+ D   W
Sbjct: 495 SGLKLISSVKEIHSYIIRKGLSD-LVLQNGIVDVYGECGNVDYAARMFELIEFK-DVVSW 552

Query: 375 RALLSFSAIHGKADMA 390
            +++S    +G A+ A
Sbjct: 553 TSMISCYVHNGLANEA 568



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 203/428 (47%), Gaps = 15/428 (3%)

Query: 16  TDPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           ++ + VHA  + S+    S++    L+  Y K   L  + +LF+ +P   I +W A+I A
Sbjct: 95  SEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGA 154

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           +  +   L   L + R   +S +P +  T   + K C  L     +G  +H L++K    
Sbjct: 155 YVTNGEPLGS-LELYREMRVSGIPLDACTFPCILKACGLLKDR-RYGAEVHGLAIKEGYV 212

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFAD 191
              F  +++V  Y++    + A+++FD + E+ DVV + +MI  ++ N + +++L +F +
Sbjct: 213 SIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGE 272

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M+ + +    Y    AL+A  + + ++Q   IH   + S    NV V   LI  Y + G 
Sbjct: 273 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGK 332

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + +A  +F  N+   ++I+WN+M++G+ Q G     L+ +H +   G  PD  + ++++ 
Sbjct: 333 MGEAANIF-YNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIA 391

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A   +G      + I    ++  L+  L+    L+    +   ++  + I   MP + D 
Sbjct: 392 ASARSGNTLHGMQ-IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDV 449

Query: 372 AVWRALLSFSAIHGKADMASKMGKRL----IDINPYDDSAYVIVANVLSGVGRWDEVAE- 426
             W  +++  A +G    A ++ + +    ID++    S+ ++  + L  +    E+   
Sbjct: 450 VSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSY 509

Query: 427 -VRKVMKD 433
            +RK + D
Sbjct: 510 IIRKGLSD 517



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 150/351 (42%), Gaps = 36/351 (10%)

Query: 59  IPSPNIVSWTALISAHSNSPLSLNIF-LSMLRHPTLSFL--------------------- 96
           IPS  +     L   H N PL ++ F L  +  P+L  +                     
Sbjct: 12  IPSFYLNCHPVLKKIHQNPPLKISKFPLKPVETPSLREICKRGSVNEAFQSLTDLFANQS 71

Query: 97  PNQRTL----ASLFKTCASLSHAFLFGLSLHS-LSLKLSLHDKPFCGSALVHFYSRFRSP 151
           P+Q +L    +S+ + C S   A   G  +H+ +    +L +  F  + LV  Y +    
Sbjct: 72  PSQFSLDEAYSSVLELCGS-KKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCL 130

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV---GSTMYCVSGAL 208
            +A+K+FD +  + +  + AMI  +  N   + SL ++ +MR S +     T  C+   L
Sbjct: 131 VDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCI---L 187

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +A   L        +HG A+  G    V V   ++  Y K   ++ AR++FD      + 
Sbjct: 188 KACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDV 247

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WN+M++ Y+  G     L LF  ++    AP+ Y+F+A L A  ++    +   +I  
Sbjct: 248 VSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG-MFIHA 306

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             ++      +     LI+   R G++ +A  I   M  + D   W ++LS
Sbjct: 307 TVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD-DWDTISWNSMLS 356


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 174/477 (36%), Positives = 276/477 (57%), Gaps = 8/477 (1%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T+ S F T  SL      G  +HS      L      G+ALV+ Y + +S + A+  F++
Sbjct: 15  TVLSGFTTPGSLEE----GRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEK 70

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS--GALRAAAELAAME 218
           I   +VV + AM+  +AQN     +L ++ +M S+  G     V+    L A + L A+ 
Sbjct: 71  ISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALA 130

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           + R IH      G D +++V   L++ YG+ G + DA+ VFD  +   + I+W++M++ +
Sbjct: 131 EGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFD-GMRRRDVISWSSMISAF 189

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           AQ+G     +EL+H +   G  PD+  F++VL A  N+G+   S  +   +    ++EP 
Sbjct: 190 AQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPT 249

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           LEHY C++  +GRAG+L DAE +   MPF P   ++  +LS   ++   +      + + 
Sbjct: 250 LEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVF 309

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
           +++P + S Y+ +AN+ S   R  + A +RK+M++R ++K+ G SWIEV  +VH F+AGD
Sbjct: 310 ELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGD 369

Query: 459 RMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVS 518
           +MH + ++IY ++  L  + +  GY      +L +V + EK   LWYHSEKLA+AFGL+S
Sbjct: 370 KMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLIS 429

Query: 519 GAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             P G  LRIVKNLR+C DCH + K IS+V  REI+VRD NR+H FL+G C+C D W
Sbjct: 430 -TPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           R VH+R   +  + D  +   L+  Y K   +  +   F  I  PN+VSW+A+++A++  
Sbjct: 30  RRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQN 89

Query: 76  -NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            ++ ++L ++  M         PN+ T  +L   C+ L  A   G  +H+   +      
Sbjct: 90  GHARMALELYREM-GSARKGMAPNRVTFITLLDACSFLG-ALAEGRKIHAAVAERGFDTD 147

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +ALV+FY R  S  +AK VFD +R RDV+ + +MI  FAQ  R+ +++ ++  M S
Sbjct: 148 LVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLS 207


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 171/482 (35%), Positives = 272/482 (56%), Gaps = 8/482 (1%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P     ++  K CA L   ++ G  +H+  +K S        + L+  Y++    +   K
Sbjct: 28  PGNFAFSTALKACADLRELWV-GRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLK 86

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VFD++ ER+V  + ++I GF +  +L ++L VF  M+   +G +   ++  L   A + A
Sbjct: 87  VFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTA 146

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +   + IH   V S    +V+V   L+D Y K G+V   RR+FD  +   +  +WN M+ 
Sbjct: 147 LLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFD-GMRSKDLTSWNTMLT 205

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           GYA  G     ++LF+ +   G  PD+ +F+A+L+   +AGL  + +K   RM++ + + 
Sbjct: 206 GYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVS 265

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
           P LEHY CL+  +GRAGR++ A  +   MP +   ++W +LL+   +H +  +A  +  R
Sbjct: 266 PSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIANR 325

Query: 397 LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLA 456
           L ++ PY+   YV+++N+ +  G WD V  VR++M+ RR+RKE G SWI+VK K+H F+A
Sbjct: 326 LFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIRKEAGCSWIQVKNKIHSFVA 385

Query: 457 GDRMHERTEDIYTKL-AELMEECERLGYVPVWDEMLHNVGDREKREALWY--HSEKLALA 513
           G     R  D Y K+  +L E  E  GY+P  D +LH+V   E+ +A+W   HSE+LA  
Sbjct: 386 GGGFEFRNSDEYKKIWNKLREAMEEFGYIPNTDVVLHDVN--EETKAMWVCGHSERLATV 443

Query: 514 FGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
           F L+  A  G  +RI KNLR+C DCH   K +SRV  R IV+RD NR+H F  G+C+C D
Sbjct: 444 FSLIHTAA-GMPIRITKNLRVCVDCHSWIKIVSRVTGRVIVLRDTNRFHHFKEGACSCND 502

Query: 574 LW 575
            W
Sbjct: 503 YW 504



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 148/321 (46%), Gaps = 14/321 (4%)

Query: 19  RIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA+ +KSS+  D+ + N L+  Y++    +  L++F+ +P  N+ SW +LIS     
Sbjct: 50  RGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKE 109

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                +L++F  M R   + F  +  TL ++   CA ++ A L G  +H+  +K +    
Sbjct: 110 DKLGEALDVFRRMQRE-GMGF--SWVTLTTILPICARVT-ALLSGKEIHAQIVKSARRPD 165

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               ++LV  Y +    D  +++FD +R +D+  +  M+ G+A N  +  ++ +F +M S
Sbjct: 166 VLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMAS 225

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQC-RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             +          L   +     E   ++ H   +  G+  ++     L+D  G+AG + 
Sbjct: 226 CGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRI- 284

Query: 254 DARRVFDENLSVLNSIA-WNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLT 311
           DA  V  +N+ +  S + W +++       +      + + L E+  + P  Y  L+ + 
Sbjct: 285 DAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIY 344

Query: 312 ALCNAGLAGESEKWIERMKVR 332
           A  NAG+        E M+ R
Sbjct: 345 A--NAGMWDSVNMVREMMQTR 363



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 115/252 (45%), Gaps = 10/252 (3%)

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           M +G+++N  L ++L V+ +M  + +    +  S AL+A A+L  +   R +H   V S 
Sbjct: 1   MAIGYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSS 60

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
              + +V  GL+  Y +    ++  +VFD+ +   N  +WN++++G+ ++      L++F
Sbjct: 61  EGPDQVVNNGLLRLYTQCECFNEVLKVFDQ-MPERNVASWNSLISGFVKEDKLGEALDVF 119

Query: 292 HLLEMRGFAPDEYSFLAVLTAL--CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
             ++  G     +S++ + T L  C    A  S K I    V+    P +     L+   
Sbjct: 120 RRMQREGMG---FSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMY 176

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL--IDINPYDDSA 407
            + G ++   R+   M    D   W  +L+  AI+G   +A  +   +    I P DD  
Sbjct: 177 VKCGVVDYGRRLFDGMR-SKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRP-DDVT 234

Query: 408 YVIVANVLSGVG 419
           ++ + +  S  G
Sbjct: 235 FIALLSGCSHAG 246


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 191/564 (33%), Positives = 296/564 (52%), Gaps = 17/564 (3%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R + AR + S  A  SI  N LI  YSK   L  + ++F+ + + ++++W  +IS ++  
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +        R       PN  T   L   C +L      G ++H    +         
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLED-LEQGRAIHRKVREDGYESDLVI 301

Query: 138 GSALVHFYSRFRSP-DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           G+ L++ Y++  S  + A++VF+ +R RDV+ +  +IV + Q  +  D+L +F  M+  +
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      +S  L A A L A  Q + +H          +V++   L++ Y + G + D  
Sbjct: 362 VAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTV 421

Query: 257 RVF----DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            VF    D++L     ++W+ ++A YAQ G   T LE F  L   G A D+ + ++ L+A
Sbjct: 422 GVFAAIRDKSL-----VSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSA 476

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + G+  E  +    M   + L P   H+ C++  + RAGRLE AE +   MPF PDA 
Sbjct: 477 CSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAV 536

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDD-SAYVIVANVLSGVGRWDEVAEVRKVM 431
            W +LLS   +H     A+++  +L ++   D+ S   +++NV +  GRWD   +VRK  
Sbjct: 537 AWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD---DVRKTR 593

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
             R  RK  G S+IE+   VH F+AGD+ H   E I  ++  L ++ +  GYVP    +L
Sbjct: 594 NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVL 653

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           HNV + EK + L YHSEKLA+A+GL+S  P G  L IVKNLR C DCH + K+ISR+V R
Sbjct: 654 HNVKEEEKEQMLCYHSEKLAIAYGLIS-TPPGTPLHIVKNLRACVDCHAAAKFISRIVGR 712

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           +IVVRD  R+H F NGSC+C D W
Sbjct: 713 KIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 174/373 (46%), Gaps = 10/373 (2%)

Query: 19  RIVHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +++HA  L++   + D  +   LIT Y++   L  + + F+ +    +V+W ALI+ +S 
Sbjct: 78  QLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSR 137

Query: 77  SP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +     +L I+  M+        P+  T +S    C  +      G  + + ++      
Sbjct: 138 NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGD-ISQGREIEARTVASGYAS 196

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                +AL++ YS+  S ++A+KVFD ++ RDV+ +  MI G+A+      +L +F  M 
Sbjct: 197 DSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMG 256

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-AGIV 252
            +D    +    G L A   L  +EQ R IH      G + ++++G  L++ Y K +  +
Sbjct: 257 PNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSL 316

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +AR+VF E +   + I WN ++  Y Q G     L++F  +++   AP+E +   VL+A
Sbjct: 317 EEARQVF-ERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSA 375

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            C    A    K +  +    + +  +     L++   R G L+D   +  A+  +    
Sbjct: 376 -CAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR-DKSLV 433

Query: 373 VWRALLSFSAIHG 385
            W  L++  A HG
Sbjct: 434 SWSTLIAAYAQHG 446



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 6/277 (2%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
           Y K   ++ +L +F+ I  PN VSWT +++A + +           R       P+    
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHD-KPFCGSALVHFYSRFRSPDNAKKVFDEI 161
                 C+S S     G  LH++ L+  L +     G+AL+  Y+R R  + A+K FDE+
Sbjct: 62  VVAIGVCSS-SKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD---VGSTMYCVSGALRAAAELAAME 218
            ++ +V + A+I G+++N     +L ++ DM S     +       S AL A   +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           Q R I    V SG   + IV   LI+ Y K G +  AR+VFD  L   + IAWN M++GY
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDR-LKNRDVIAWNTMISGY 239

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           A+QG  +  LELF  +      P+  +F+ +LTA  N
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN 276



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           YGK G V+DA  VF   +   NS++W  ++A +A+ G     L  +  + + G  PD   
Sbjct: 2   YGKCGSVADALAVF-HAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           F+ V   +C++    +  + +  M +  + LE  +   T LI+   R   LE A +    
Sbjct: 61  FV-VAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
           M  +     W AL++  + +G    A K+ + ++  +P
Sbjct: 120 MG-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSP 156


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 178/566 (31%), Positives = 305/566 (53%), Gaps = 24/566 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA A+++   ++  I N LI  Y+K   + +    F  +   +++SWT +I+ ++ +  
Sbjct: 371 VHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNEC 430

Query: 80  SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLS--------HAFLFGLSLHSLSLKLS 130
            L   +++ R   +  +  +   + S+ + C+ L         H ++F   L  + L+  
Sbjct: 431 HLEA-INLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQ-- 487

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                   +A+V+ Y      D A++ F+ IR +D+V + +MI     N   V++L +F 
Sbjct: 488 --------NAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFY 539

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            ++ +++      +  AL A A L+++++ + IHG  +  G      + + L+D Y   G
Sbjct: 540 SLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCG 599

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V ++R++F  ++   + I W +M+      G  +  + LF  +      PD  +FLA+L
Sbjct: 600 TVENSRKMF-HSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALL 658

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  ++GL  E +++ E MK  Y+LEP  EHY C++  + R+  LE+A +   +MP +P 
Sbjct: 659 YACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPS 718

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           + VW ALL    IH   ++     K L+  +  +   Y +++N+ +  GRW++V EVR  
Sbjct: 719 SEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLR 778

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC-ERLGYVPVWDE 489
           MK   ++K  G SWIEV  K+H F+A D+ H +T+DIY KLA+  +   ++ GY+     
Sbjct: 779 MKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKF 838

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           + HNV + EK + L+ HSE+LAL +GL+   P+G ++RI KNLRIC DCH  FK  S V 
Sbjct: 839 VFHNVSEEEKTQMLYRHSERLALGYGLLV-TPKGTSIRITKNLRICDDCHTFFKIASEVS 897

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
           +R +VVRD NR+H F  G C+CGD W
Sbjct: 898 QRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 188/393 (47%), Gaps = 20/393 (5%)

Query: 21  VHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  ALKS+  AD  + N LI  Y+K   +  + R+F  +   + VSW  L+S    + L
Sbjct: 270 IHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNEL 329

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +LN F  M         P+Q ++ +L    +  S   L G  +H+ +++  L     
Sbjct: 330 YRDALNYFRDMQNSAQ---KPDQVSVLNLIAA-SGRSGNLLNGKEVHAYAIRNGLDSNMQ 385

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF--ADMRS 194
            G+ L+  Y++     +    F+ + E+D++ +  +I G+AQN   ++++++F    ++ 
Sbjct: 386 IGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKG 445

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            DV   M  +   LRA + L +    R IHG+     L  ++++   +++ YG+ G    
Sbjct: 446 MDVDPMM--IGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDY 502

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           ARR F E++   + ++W +M+      G     LELF+ L+     PD  + ++ L+A  
Sbjct: 503 ARRAF-ESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATA 561

Query: 315 NAGLAGESEKWIERMKVR--YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
           N   + +  K I    +R  + LE  +   + L+      G +E++ ++  ++  + D  
Sbjct: 562 NLS-SLKKGKEIHGFLIRKGFFLEGPIA--SSLVDMYACCGTVENSRKMFHSVK-QRDLI 617

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +W ++++ + +HG  + A  + K++ D N   D
Sbjct: 618 LWTSMINANGMHGCGNEAIALFKKMTDENVIPD 650



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 122/269 (45%), Gaps = 19/269 (7%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  LH+  LK   H   F  + L+H Y +  S  +A KVFDE+ ER +  + AM+  F  
Sbjct: 65  GQQLHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVS 122

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           + + ++++ ++ +MR   V          L+A   L        IHG AV  G    V V
Sbjct: 123 SGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFV 182

Query: 239 GTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
              LI  YGK G +  AR +FD   +   ++++WN++++ +  +G     L LF  ++  
Sbjct: 183 CNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEV 242

Query: 298 GFAPDEYSFLAVLTAL-------CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           G A + Y+F+A L  +          G+ G + K      V             LI+   
Sbjct: 243 GVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVA--------NALIAMYA 294

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           + GR+EDAER+  +M    D   W  LLS
Sbjct: 295 KCGRMEDAERVFASM-LCRDYVSWNTLLS 322



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 5/295 (1%)

Query: 21  VHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHI--PSPNIVSWTALISAHSNS 77
           +H  A+K    +   + N LI  Y K   L  +  LF+ I     + VSW ++ISAH   
Sbjct: 167 IHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTE 226

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
              L       R   +    N  T  +  +     S   L G+ +H  +LK +     + 
Sbjct: 227 GKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKL-GMGIHGAALKSNHFADVYV 285

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  Y++    ++A++VF  +  RD V +  ++ G  QN    D+L+ F DM++S  
Sbjct: 286 ANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQ 345

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 V   + A+     +   + +H +A+ +GLD N+ +G  LID Y K   V     
Sbjct: 346 KPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGY 405

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            F E +   + I+W  ++AGYAQ       + LF  ++++G   D     +VL A
Sbjct: 406 AF-ECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRA 459



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 137/311 (44%), Gaps = 12/311 (3%)

Query: 9   PQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           PQ Q        +HAR LKS      +   L+  Y K   L  ++++F+ +    I +W 
Sbjct: 63  PQGQQ-------LHARLLKS-HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWN 114

Query: 69  ALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           A++ A  +S   L           L    +  T  S+ K C +L  + L G  +H +++K
Sbjct: 115 AMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRL-GAEIHGVAVK 173

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSL 186
               +  F  +AL+  Y +      A+ +FD I   + D V + ++I       + +++L
Sbjct: 174 CGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEAL 233

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
           S+F  M+   V S  Y    AL+   + + ++    IHG A+ S    +V V   LI  Y
Sbjct: 234 SLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMY 293

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            K G + DA RVF   L   + ++WN +++G  Q       L  F  ++     PD+ S 
Sbjct: 294 AKCGRMEDAERVFASML-CRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSV 352

Query: 307 LAVLTALCNAG 317
           L ++ A   +G
Sbjct: 353 LNLIAASGRSG 363



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 7/182 (3%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HSN 76
           R +H    K   AD  + N ++  Y +     Y+ R F  I S +IVSWT++I+   H+ 
Sbjct: 470 REIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNG 529

Query: 77  SPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            P+ +L +F S+      +  P+   + S     A+LS +   G  +H   ++     + 
Sbjct: 530 LPVEALELFYSL---KQTNIQPDSIAIISALSATANLS-SLKKGKEIHGFLIRKGFFLEG 585

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              S+LV  Y+   + +N++K+F  +++RD++ + +MI     +    +++++F  M   
Sbjct: 586 PIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDE 645

Query: 196 DV 197
           +V
Sbjct: 646 NV 647


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 187/544 (34%), Positives = 298/544 (54%), Gaps = 7/544 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           +   L++ Y K    + +  +F  +   ++V+W+A+++A++ +       L + R   L 
Sbjct: 98  VQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREA-LGLFRQMDLD 156

Query: 95  FL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            + PN+ TL S    CASL      G  +H       +      G+ALV+ Y +    + 
Sbjct: 157 GVAPNKVTLVSGLDACASLGD-LRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEA 215

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A + F +I E++VV + A+   +A+N R  D++ V   M    +          L A A 
Sbjct: 216 AVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAA 275

Query: 214 LAAMEQCRVIHGHAVV--SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           +AA++Q R IH    V   GL+ +V V T L++ Y K G ++ A  +FD+ ++ L+ + W
Sbjct: 276 IAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDK-IAHLDLVLW 334

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N+++A  AQ G     LELF  + + G  P   +F +VL A  +AG+  +  K       
Sbjct: 335 NSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIG 394

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            + + P  EH+ C++  +GRAG + D+E + + MPFEP    W A L     +   D A 
Sbjct: 395 DHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAI 454

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              + L  ++P   + YV+++N+ +  GRW +VA +R+ M+     KE GRSWIEVK +V
Sbjct: 455 WAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRV 514

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F++GD  H R  +I+ +L  L +  +  GYVP  + +LH+V    K   + YHSEKLA
Sbjct: 515 HEFISGDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLA 574

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AF L++  P G  +R+VKNLR+C DCH + K+IS++V REIVVRD NR+HRF NG+C+C
Sbjct: 575 MAFALLT-TPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSC 633

Query: 572 GDLW 575
           GD W
Sbjct: 634 GDYW 637



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 168/367 (45%), Gaps = 18/367 (4%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           +++ YS+   +    + F+ +P  +IVSW ALI+A+  +      +L   R   L  +  
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWL-FFRGMLLQGINP 59

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
                S+F +  + +     G S+    L   + ++    +ALV  Y +     +A  VF
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
             +  RDVV + AM+  +A+N    ++L +F  M    V      +   L A A L  + 
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
              ++H      G+   V+VGT L++ YGK G +  A   F + +   N +AW+A+ A Y
Sbjct: 180 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEK-NVVAWSAISAAY 238

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A+       + + H +++ G  P+  +F++VL A        +  +  ER +V   L  G
Sbjct: 239 ARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQV---LGGG 295

Query: 339 LEH----YTCLISAMGRAGRLEDA----ERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           LE      T L++   + G L  A    ++IA       D  +W +L++ +A HG+ + A
Sbjct: 296 LESDVYVLTALVNMYSKCGNLALAGDMFDKIA-----HLDLVLWNSLIATNAQHGQTEKA 350

Query: 391 SKMGKRL 397
            ++ +R+
Sbjct: 351 LELFERM 357


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 182/542 (33%), Positives = 281/542 (51%), Gaps = 56/542 (10%)

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M +   +   P+  +L ++   CAS+  A+L G ++H ++++    +  F G+ALV  Y+
Sbjct: 1   MCKLGDIDMRPDVVSLVNVLPACASMG-AWLHGKAVHGIAVRSGSFEDLFVGNALVDMYA 59

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD---------- 196
           +    D A KVFD I+E+DVV + AM+ G++Q  R  D+L +F  MR  +          
Sbjct: 60  KCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSA 119

Query: 197 ------------------------------------------VGSTMYCVSGALRAAAEL 214
                                                     V    + +S AL A A L
Sbjct: 120 VIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARL 179

Query: 215 AAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           AA+   R IH + + +  D   + V   LID Y K+G +  AR VFD NL   N ++W +
Sbjct: 180 AALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFD-NLKQKNFVSWTS 238

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           +M GY   G     LE+F  +   G  PD  + L VL A  ++G+  +  ++   M   +
Sbjct: 239 LMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEF 298

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            + PG EHY C++  +GRAGRL +A  +   M  EP + VW ALLS   IH   ++    
Sbjct: 299 GVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHA 358

Query: 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHV 453
            K+L+++N  +D +Y +++N+ +   RW +VA VR +MK+  +RK  G SW++ K     
Sbjct: 359 AKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTT 418

Query: 454 FLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALA 513
           F   D+ H +++ IY  L  L +  + LGYVP     LH+V D EK + L+ HSEKLALA
Sbjct: 419 FYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALA 478

Query: 514 FGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
           +G++  AP G  +RI KNLR+C DCH +  YIS +++ EI++RD +R+H F  GSC+C  
Sbjct: 479 YGILISAP-GAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSG 537

Query: 574 LW 575
            W
Sbjct: 538 YW 539



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 123/278 (44%), Gaps = 38/278 (13%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISA------------ 73
           + D   +N ++  YS+      +L LF  +   NI    VSW+A+I+A            
Sbjct: 76  EKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLD 135

Query: 74  ------HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
                 H  +  +L +F  M +   L   PN  T++     CA L+ A   G  +H+  L
Sbjct: 136 VFREMQHGEANDALELFSWMFKQDGL-VKPNCFTISCALIACARLA-ALRLGRQIHAYIL 193

Query: 128 KLSLHDKPF--CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDS 185
           + +  D  F    + L+  Y++    D A+ VFD +++++ V + +++ G+  + R  ++
Sbjct: 194 R-NHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEA 252

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG---- 241
           L VF +MR   +      +   L A +    ++Q     G    + + +   V  G    
Sbjct: 253 LEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQ-----GIEFFNSMSKEFGVIPGQEHY 307

Query: 242 --LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
             ++D  G+AG +++A  + +      +SI W A+++G
Sbjct: 308 ACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSG 345


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 205/598 (34%), Positives = 307/598 (51%), Gaps = 49/598 (8%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+++    D+++   L   Y+ S  L  ++ L    P P  V +T+ I AHS+  L
Sbjct: 49  LHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGL 108

Query: 80  SLNIFLSMLRHPTLS--FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +  L++L    LS   LP   TL++    C  L+     G +LH  ++KL+L  +P+ 
Sbjct: 109 H-HAALALLSEMLLSHGLLPTAHTLSASLPACGGLA----VGRALHGYAVKLALSGEPYV 163

Query: 138 GSALVHFY--------------------------------SRFRSPDNAKKVFDEIRERD 165
            +AL+  Y                                ++    D+A+ +FD +  +D
Sbjct: 164 ATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKD 223

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           ++C+ AM+ G+ Q+ R  ++L +F  M  S V      V  AL A A+L   E  R +H 
Sbjct: 224 LICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHS 283

Query: 226 HAVVSGLDR---NVIVGTGLIDGYGKAGIVSDARRVF-DENLSVLNSIAWNAMMAGYAQQ 281
               S   R   N  VGT LID Y K G + DA  VF D      + +AWNAM+ GYA  
Sbjct: 284 FVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMH 343

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
           G     L  F  L  +G  P + +F+ VL A  ++GL  E  +    M   Y +EP +EH
Sbjct: 344 GHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEH 403

Query: 342 YTCLISAMGRAGRLEDAERIAMAMP-FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           Y C++  +GRAGR+E+A  +  +M   +PDA +W +LL+   +H   ++  ++   L+  
Sbjct: 404 YGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVAN 463

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
              +   YV+++N+ +  G W EV  VR +M+   ++KE G S +EV  +V  F+AGDR 
Sbjct: 464 GLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRS 523

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWD---EMLHNVGDREKREALWYHSEKLALAFGLV 517
           H R  +IY KL E+       G+VP  +     L +     K +AL  HSEKLALAFGL+
Sbjct: 524 HPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLI 583

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S  P G  ++IVKNLR C DCH   K +S V  R+IV RD NR+H F++GSCTCGD W
Sbjct: 584 S-TPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 159/394 (40%), Gaps = 60/394 (15%)

Query: 86  SMLRHPTLSFLPNQRTL---ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142
           S  RHP+        T    A+L   CAS   A      LH+ +++  +         L 
Sbjct: 14  SSTRHPSGGVQHGVLTADRAAALLAGCASARRAS----ELHAAAVRAGVDQDKAVDFRLQ 69

Query: 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSDVGSTM 201
             Y+     D A  +     +   V Y + I   +       +L++ ++M  S  +  T 
Sbjct: 70  RAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTA 129

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGL----------------------------- 232
           + +S +L A   LA     R +HG+AV   L                             
Sbjct: 130 HTLSASLPACGGLAV---GRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDG 186

Query: 233 ---DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
              D +V+  T ++  Y K G++ DAR +FD  L   + I WNAMM GY Q G  S  L 
Sbjct: 187 MQPDPHVVSVTAMLTCYAKMGLLDDARSLFD-GLPSKDLICWNAMMDGYTQHGRPSEALR 245

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM-------KVRYKLEPGLEHY 342
           LF  +   G  PDE S +  L+A+   G A ES +W+          +VR     G    
Sbjct: 246 LFRRMLRSGVEPDEVSVVLALSAVAQLGTA-ESGRWLHSFVTNSSSRRVRLNARVG---- 300

Query: 343 TCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMA-SKMGK-RLID 399
           T LI    + G LEDA  +   +   + D   W A+++  A+HG +  A +  G+ R   
Sbjct: 301 TALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQG 360

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           + P D + ++ V N  S  G  DE  E+ + M +
Sbjct: 361 LWPTDIT-FIGVLNACSHSGLVDEGRELFRSMAE 393


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 196/583 (33%), Positives = 309/583 (53%), Gaps = 20/583 (3%)

Query: 10  QPQNTSTDPRIVH-----------ARALKSS--QADRSIYNNLITNYSKSNL-LSYSLRL 55
           +P +T    RI+H           A AL SS    D   YN L+    +S   L+ +  L
Sbjct: 56  RPPSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARAL 115

Query: 56  FNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112
           F+ +P  +  SW+A++SAH+       +L I+  MLR P  + + N+ T +S     A+ 
Sbjct: 116 FDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAA-ATA 174

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
           +     G  LH   ++  +       SAL   Y++    D+A+ VFD +  RDVV + AM
Sbjct: 175 ARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAM 234

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           +  +    R  +   +F  M  S +    +  +G LRA AE  + +  + +HG    S  
Sbjct: 235 VERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRA 294

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
             +    + L+  Y K G +  A RVF   +  L+ ++W AM++GYAQ G     L  F 
Sbjct: 295 GDSCFAESALVHMYSKYGDMGTAVRVF-RGMPKLDLVSWTAMISGYAQNGQPDEALRYFD 353

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
           +L   G  PD  +F+ VL+A  +AGL  +       +K  Y +E   +HY C+I  + R+
Sbjct: 354 MLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRS 413

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412
           G  E AE +   M  +P+  +W +LL    IH    +A    + L +I P + + YV +A
Sbjct: 414 GLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLA 473

Query: 413 NVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLA 472
           N+ + VG +DEV   R++M+ + + K    SWIEV  ++HVFL GD++H + E +Y  L 
Sbjct: 474 NIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALLK 533

Query: 473 ELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNL 532
           +L  +    GYV     +LH+V D +K++ + YHSE+LA+AFG+++  P+G  +++ KNL
Sbjct: 534 KLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIA-TPKGAPIKVFKNL 592

Query: 533 RICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           RIC DCH + K IS++V+REI+VRD NR+H F NGSC+C D W
Sbjct: 593 RICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 205/609 (33%), Positives = 325/609 (53%), Gaps = 51/609 (8%)

Query: 4   DLNQQPQPQNT-STDPRIVHARALKSSQADRSIYNNLITNYSKS--------NLLSYSLR 54
           DL    +P+   ST P+       + + AD   YN L+  Y+++         LL+ +  
Sbjct: 23  DLAGAAEPEAVASTTPQ-------RKTTAD---YNRLLAGYARAARPGGRRDRLLADARH 72

Query: 55  LFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           LF+ IP P+ VS+  L+S H    +   + ++F +M    T   + +  T+ S      +
Sbjct: 73  LFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAM--PATARNVTSWNTMLSGLSRSGA 130

Query: 112 LSHA---FLFGLSLHSLSLKLSL----HDKPFCG-----------------SALVHFYSR 147
           +  A   FL   + +S+S    +    H    C                  +A+V  Y  
Sbjct: 131 VGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMD 190

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSG 206
               + A + F+ +  R +V + A++ G+ +NSR  D+L VF  M R +DV      +S 
Sbjct: 191 SGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSS 250

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L   + L+A+   R +H       L R V  GT L+  Y K G +  A ++F E + + 
Sbjct: 251 VLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSE-MRIR 309

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + IAWNAM++GYA  GD    +ELF  ++ +G  P+  +F+AVLTA  + G+     +  
Sbjct: 310 DVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCF 369

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           ERM+  Y +E  ++HY+C++  + RAG LE A  +  +MPF+P  + +  LL+ S ++  
Sbjct: 370 ERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKN 429

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            + A     +LI+ NP +  AYV +AN+ +   +W +V+ VR+ MKD  V K  G SW+E
Sbjct: 430 MEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVE 489

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           + G +HVF + DR+H +   I+ +L +L E  + +GYVP  D  LH+V +  K + L  H
Sbjct: 490 INGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQMLMRH 549

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+AFGL+S AP G TLRI KNLR+C DCH + K IS++ +REI++RD  R+H F +
Sbjct: 550 SEKLAIAFGLLSTAP-GITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFHHFRS 608

Query: 567 GSCTCGDLW 575
           G C+CGD W
Sbjct: 609 GHCSCGDYW 617


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 307/561 (54%), Gaps = 10/561 (1%)

Query: 19  RIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           R  H  A+K+  A+   + + ++  Y +   +  ++++F+++ S N+ ++ ++I+     
Sbjct: 133 RQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDR 192

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                S +I  SM+R+       +  +  ++   CAS     L G  +H+ +LK  L   
Sbjct: 193 GQMDGSTSIVRSMVRNVGQW---DHVSYVAVLGHCASTKEVVL-GSQVHTQALKRRLELN 248

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            + GSALV  Y +   P  A +VF+ + E+++V + A++  + QN    D+L +F DM  
Sbjct: 249 VYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEM 308

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V    +  + AL + A LA ++    +    + +G    + V   L++ Y K+G V D
Sbjct: 309 EGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVED 368

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           ARRVF  ++   + ++WN+++ GYA  G     +E FH +      P   +F+ VL+A  
Sbjct: 369 ARRVF-LSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACA 427

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
             GL  E   ++  M     ++PG EHYTC++  + R GRL++AER   +     D   W
Sbjct: 428 QLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAW 487

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           R+LLS   ++    +  ++ +++  + P D   YV+++N+ +   RWD V +VR++M++ 
Sbjct: 488 RSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMREL 547

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            VRKE G SWI+V  +VHVF + D+ H   E I  KL EL+++ + +GYVP     LH+V
Sbjct: 548 GVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDV 607

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            D +K E L YHSEKLALAFGL+   P+G+ +RI+KN+RIC DCH + K IS    R IV
Sbjct: 608 EDEQKEEHLMYHSEKLALAFGLIR-TPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIV 666

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD  R+H   +G C+C D W
Sbjct: 667 VRDTVRFHCIEDGVCSCDDYW 687



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 184/377 (48%), Gaps = 23/377 (6%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           + VHAR +++++ D   YNNLI  Y K   L  + ++F+ +PS N VS   L+S +++S 
Sbjct: 36  KAVHARVVRAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSG 95

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
              +  L++LR     F  N+  L+S     A +  ++  G   H  ++K  L + P+  
Sbjct: 96  RHRDA-LALLR--VADFGLNEYVLSSAVAATAHV-RSYDMGRQCHGYAIKAGLAEHPYVC 151

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           SA++H Y +    D A KVFD +   +V  + +MI GF    ++  S S+   M   +VG
Sbjct: 152 SAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSM-VRNVG 210

Query: 199 S----TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                +   V G   +  E+    Q   +H  A+   L+ NV VG+ L+D YGK     +
Sbjct: 211 QWDHVSYVAVLGHCASTKEVVLGSQ---VHTQALKRRLELNVYVGSALVDMYGKCDFPHE 267

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A RVF E L   N ++W A+M  Y Q       L+LF  +EM G  P+E+++   L +  
Sbjct: 268 ANRVF-EVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSC- 325

Query: 315 NAGLA----GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            AGLA    G +          + L P       L++   ++G +EDA R+ ++MP   D
Sbjct: 326 -AGLATLKNGNALGACTMKTGHWGLLPVC---NALMNMYSKSGSVEDARRVFLSMPCR-D 380

Query: 371 AAVWRALLSFSAIHGKA 387
              W +++   A HG+A
Sbjct: 381 VVSWNSIIIGYAHHGRA 397


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/553 (33%), Positives = 301/553 (54%), Gaps = 11/553 (1%)

Query: 28  SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIF 84
           SS  D   Y  LIT Y+    +  + ++F+ IP  ++VSW A+IS ++   N+  +L++F
Sbjct: 164 SSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLF 223

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
             M++    +  P++ T+ ++   CA  S +   G  +HS      L       +AL+  
Sbjct: 224 KEMMK---TNVKPDESTMVTVVSACAQ-SGSIQLGRQVHSWIDDHGLGSNLKIVNALIDL 279

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           YS+    + A  +F  +  +DV+ +  MI G+   +   ++L +F +M  S        +
Sbjct: 280 YSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTM 339

Query: 205 SGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
              L A A+L A++  R IH +    + G+     + T LID Y K G +  A +VF+ +
Sbjct: 340 LSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN-S 398

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
           +      A NAM+ G+A  G  +   ++F  +   G  PD+ +F+ +L+A  ++G+    
Sbjct: 399 MHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLG 458

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
            +    M   YK+ P LEHY C+I  +G  G  ++AE +   M  EPD  +W +LL    
Sbjct: 459 RRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACK 518

Query: 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGR 442
           +HG  ++     ++LI I P +  +YV+++N+ +  GRW+EVA +R ++ D+ ++K  G 
Sbjct: 519 MHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGC 578

Query: 443 SWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREA 502
           S IE+   VH F+ GD+ H R  +IY  L E+    E  G+VP   E+L  + +  K+ A
Sbjct: 579 SSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGA 638

Query: 503 LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562
           L +HSEKLA+AFGL+S  P G  L IVKNLR+CR+CHE+ K IS++ +REI+ RD  R+H
Sbjct: 639 LRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 697

Query: 563 RFLNGSCTCGDLW 575
            F +G C+C D W
Sbjct: 698 HFRDGVCSCNDYW 710



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 206/455 (45%), Gaps = 68/455 (14%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLS------------YSLRLFNHIPSPNIVS 66
           RI+HA+ +K+      ++N   TNY+ S LL             Y++ +F  I  PN++ 
Sbjct: 19  RIIHAQMIKTG-----LHN---TNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLI 70

Query: 67  WTALISAH--SNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASL----------S 113
           W  +   H  S+ P+S + +++ M+   +L  LPN  T   L K+CA L           
Sbjct: 71  WNTMFRGHALSSDPVSAIKLYVCMI---SLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHG 127

Query: 114 HAFLFG----LSLHSLSLKLSLHD-------KPFCGS---------ALVHFYSRFRSPDN 153
           H    G    L +H+  + + + +       K F GS         AL+  Y+     ++
Sbjct: 128 HVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIES 187

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+K+FDEI  +DVV + A+I G+A      ++L +F +M  ++V      +   + A A+
Sbjct: 188 AQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQ 247

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
             +++  R +H      GL  N+ +   LID Y K G V  A  +F + LS  + I+WN 
Sbjct: 248 SGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLF-QGLSNKDVISWNT 306

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE-RMKVR 332
           M+ GY         L LF  +   G  P++ + L++L A    G A +  +WI   +  R
Sbjct: 307 MIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLG-AIDFGRWIHVYIDKR 365

Query: 333 YK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA---- 387
            K +       T LI    + G +E A ++  +M     +A    +  F A+HG+A    
Sbjct: 366 IKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGF-AMHGRANAAF 424

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
           D+ S+M K    I P DD  +V + +  S  G  D
Sbjct: 425 DIFSRMRKN--GIEP-DDITFVGLLSACSHSGMLD 456



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 139/326 (42%), Gaps = 57/326 (17%)

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF---YS 146
           HP+LS L N +TL SL                +H+  +K  LH+  +  S L+ F     
Sbjct: 3   HPSLSLLHNCKTLQSL--------------RIIHAQMIKTGLHNTNYALSRLLEFCILSP 48

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
            F     A  VF+ I+E +++ +  M  G A +S  V ++ ++  M S  +    Y    
Sbjct: 49  NFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPF 108

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLD-------------------------------RN 235
            L++ A+L   ++ + IHGH +  G +                               R+
Sbjct: 109 LLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRD 168

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           V+  T LI GY   G +  A+++FDE + V + ++WNA+++GYA  G+    L+LF  + 
Sbjct: 169 VVSYTALITGYASRGYIESAQKMFDE-IPVKDVVSWNAIISGYADTGNNKEALDLFKEMM 227

Query: 296 MRGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
                PDE + + V++A   +G   L  +   WI+     + L   L+    LI    + 
Sbjct: 228 KTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWID----DHGLGSNLKIVNALIDLYSKC 283

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALL 378
           G +E A  +   +    D   W  ++
Sbjct: 284 GEVETACGLFQGLS-NKDVISWNTMI 308


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 185/562 (32%), Positives = 309/562 (54%), Gaps = 13/562 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNS 77
           +H+ ++K   +++  + N LI  Y++   L    ++F+ +   +++SW ++I A+  +  
Sbjct: 269 IHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQ 328

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS--LHDKP 135
           PL   +    +R   +   P+  TL SL    + L        S+   +L+    L D  
Sbjct: 329 PLRAILLFQEMRLSRIQ--PDCLTLISLASILSQLGE-IRACRSVQGFTLRKGWFLEDIT 385

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-- 193
             G+A+V  Y++    D+A+ VF+ +  +DV+ +  +I G+AQN    +++ ++  M   
Sbjct: 386 I-GNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEE 444

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             ++ +        L A ++  A+ Q   +HG  + +GL  +V VGT L D YGK G + 
Sbjct: 445 GGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLD 504

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA  +F + +  +NS+ WN ++A +   G     + LF  +   G  PD  +F+ +L+A 
Sbjct: 505 DALSLFYQ-IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSAC 563

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            ++GL  E E   E M+  Y + P L+HY C++   GRAG+LE A     +MP +PDA++
Sbjct: 564 SHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASI 623

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALLS   +HG  D+     + L ++ P     +V+++N+ +  G+W+ V E+R +   
Sbjct: 624 WGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSG 683

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           + +RK  G S +EV  KV VF  G++ H   E++Y +L  L E+ + +GYVP    +L +
Sbjct: 684 KGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQD 743

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V D EK   L  HSE+LA+AF L++  P   T+RI KNLR+C DCH   K+IS++ EREI
Sbjct: 744 VEDDEKEHILMSHSERLAMAFALIT-TPAKTTIRIFKNLRVCGDCHSVTKFISKITEREI 802

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           +VRD NR+H F NG C+CGD W
Sbjct: 803 IVRDSNRFHHFKNGVCSCGDYW 824



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 203/419 (48%), Gaps = 25/419 (5%)

Query: 16  TDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           TD   +H  ALK     D  +  +LI  Y +   +  +  LF+ +P+ ++ SW A+IS +
Sbjct: 167 TDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGY 226

Query: 75  SNS-----PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
             S      L+L+  L  +         +  T+ SL   C   +  F  G+++HS S+K 
Sbjct: 227 CQSGNAKEALTLSDGLRAM---------DSVTVVSLLSACTE-AGDFNRGVTIHSYSIKH 276

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
            L  + F  + L+  Y+ F S  + +KVFD +  RD++ + ++I  +  N + + ++ +F
Sbjct: 277 GLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLF 336

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGK 248
            +MR S +      +       ++L  +  CR + G  +  G    ++ +G  ++  Y K
Sbjct: 337 QEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAK 396

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG--FAPDEYSF 306
            G+V  AR VF+  L   + I+WN +++GYAQ G  S  +E+++++E  G   + ++ ++
Sbjct: 397 LGLVDSARAVFNW-LPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTW 455

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
           ++VL A   AG   +  K   R+ ++  L   +   T L    G+ GRL+DA  +   +P
Sbjct: 456 VSVLPACSQAGALRQGMKLHGRL-LKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP 514

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDE 423
              ++  W  L++    HG  + A  + K ++D  + P D   +V + +  S  G  DE
Sbjct: 515 -RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKP-DHITFVTLLSACSHSGLVDE 571



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 173/382 (45%), Gaps = 22/382 (5%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + +HAR + S+      I   L+  Y     ++ +   F+HI + ++ +W  +IS +  +
Sbjct: 71  KCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRA 130

Query: 78  PLSLNIFLSM-LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             S  +     L   +    P+ RT  S+ K C +++     G  +H L+LK       +
Sbjct: 131 GYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD----GNKIHCLALKFGFMWDVY 186

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+H Y R+ +  NA+ +FDE+  RD+  + AMI G+ Q+    ++L++   +R+ D
Sbjct: 187 VAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMD 246

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
             +    V   L A  E     +   IH +++  GL+  + V   LID Y + G + D +
Sbjct: 247 SVT----VVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQ 302

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VFD  + V + I+WN+++  Y         + LF  + +    PD  + +++ + L   
Sbjct: 303 KVFDR-MYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQL 361

Query: 317 GLAGESEKWIERMKVRYKLEPG--LEHYT---CLISAMGRAGRLEDAERIAMAMPFEPDA 371
           G     E    R    + L  G  LE  T    ++    + G ++ A  +   +P   D 
Sbjct: 362 G-----EIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NKDV 415

Query: 372 AVWRALLSFSAIHGKADMASKM 393
             W  ++S  A +G A  A +M
Sbjct: 416 ISWNTIISGYAQNGFASEAIEM 437



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 149/333 (44%), Gaps = 27/333 (8%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA-LVHFYSRFRSPDNAKKVFDEIR 162
           +LF+ C +L  A      LH+  L +S   +  C SA LV+ Y    +   A+  FD I 
Sbjct: 59  TLFRYCTNLQSA----KCLHA-RLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIH 113

Query: 163 ERDVVCYGAMIVGFAQ---NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
            RDV  +  MI G+ +   +S ++   S+F  M SS +          L+A   +    +
Sbjct: 114 NRDVYAWNLMISGYGRAGYSSEVIRCFSLF--MLSSGLQPDYRTFPSVLKACRNVTDGNK 171

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
              IH  A+  G   +V V   LI  Y + G V +AR +FDE +   +  +WNAM++GY 
Sbjct: 172 ---IHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDE-MPTRDMGSWNAMISGYC 227

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G+    L L   L     A D  + +++L+A   AG        I    +++ LE  L
Sbjct: 228 QSGNAKEALTLSDGLR----AMDSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESEL 282

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RL 397
                LI      G L+D +++   M +  D   W +++    ++ +   A  + +  RL
Sbjct: 283 FVSNKLIDLYAEFGSLKDCQKVFDRM-YVRDLISWNSIIKAYELNEQPLRAILLFQEMRL 341

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             I P D    + +A++LS +G   E+   R V
Sbjct: 342 SRIQP-DCLTLISLASILSQLG---EIRACRSV 370


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 258/423 (60%), Gaps = 2/423 (0%)

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A+K+FDE+ ERD + + +M+ G+    R  ++L +F  M+  +     + +S  L A +
Sbjct: 246 DARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACS 305

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
            + A++Q R +H +   + +  + ++GT L+D Y K G +     VF+E +       WN
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEE-MKEREIFTWN 364

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           AM+ G A  G     LELF  L+     P+  + + VLTA  +AG   +  +  + M+  
Sbjct: 365 AMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREF 424

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y ++P LEHY C++  +GR+G   +AE +  +MP +P+AAVW ALL    IHG  D+A +
Sbjct: 425 YGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAER 484

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
           +GK L+++ P +   YV+++N+ + VGR+D+V+++RK+MKDR ++   G S +++ G VH
Sbjct: 485 VGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVH 544

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
            F  GD  H + ++IY KL  + E  +  G+ P   ++L ++ + EK  A+ YHSEKLA+
Sbjct: 545 EFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAI 604

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AFGL++  P GK + IVKNLR+C DCH + K IS++ +REI+VRD  RYH F NG+C+C 
Sbjct: 605 AFGLINTLP-GKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCK 663

Query: 573 DLW 575
           D W
Sbjct: 664 DFW 666



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 168/381 (44%), Gaps = 50/381 (13%)

Query: 21  VHARALKSSQ-ADRSIYNNLITNYSKSNL--LSYSLRLFNHIPSPNIVSWTALISAH-SN 76
           +H   L+S    D  +   L+  Y+  +     ++L++F+ IP+PN+  W  +I     N
Sbjct: 52  LHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLEN 111

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + L   I+        +   PN+ T  +LFK C S++ A   G  +H   +K  +     
Sbjct: 112 NKLFKAIYF--YGRMVIDARPNKFTYPTLFKAC-SVAQAVQEGRQIHGHVVKHGIGSDVH 168

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             SA +H Y+ F   ++A+K+F    E DVVC+  MI G+ +   L  +  +FA M   +
Sbjct: 169 IKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKN 227

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +GS                                   NV     +I+G  K G + DAR
Sbjct: 228 IGSW----------------------------------NV-----MINGLAKGGNLGDAR 248

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           ++FDE +S  + I+W++M+ GY   G     LE+F  ++     P  +   +VL A  N 
Sbjct: 249 KLFDE-MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNI 307

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G A +  +W+     R  ++      T L+    + GRL+    +   M  E +   W A
Sbjct: 308 G-AIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMK-EREIFTWNA 365

Query: 377 LLSFSAIHGKADMASKMGKRL 397
           ++   AIHG+A+ A ++  +L
Sbjct: 366 MIGGLAIHGRAEDALELFSKL 386



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPT 92
           +N +I   +K   L  + +LF+ +   + +SW++++  + ++     +L IF  M R  T
Sbjct: 231 WNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREET 290

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
               P +  L+S+   C+++  A   G  +H+   + S+      G+AL+  Y++    D
Sbjct: 291 R---PGRFILSSVLAACSNIG-AIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLD 346

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
              +VF+E++ER++  + AMI G A + R  D+L +F+ ++   +      + G L A A
Sbjct: 347 MGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACA 406

Query: 213 ELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
               +++  R+        G+D  +     ++D  G++G+ S+A  + +      N+  W
Sbjct: 407 HAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVW 466

Query: 272 NAMMAGYAQQGD 283
            A++      G+
Sbjct: 467 GALLGACRIHGN 478


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 302/598 (50%), Gaps = 45/598 (7%)

Query: 17  DPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS----PNIVSWTALIS 72
           D R V  R    S+ D    + L+  Y++   L   +R+ + +      PNIVSW  ++S
Sbjct: 169 DARKVFDRM---SEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILS 225

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
             + S       +   +   L F P+Q T++S+  +    S     G  +H   +K  L 
Sbjct: 226 GFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGD-SENLNMGRQIHGYVIKQGLL 284

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIR------------------------------ 162
                 SA++  Y +        K+FDE                                
Sbjct: 285 KDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLF 344

Query: 163 -----ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
                E +VV + ++I G AQN + +++L +F +M+ + V      +   L A   +AA+
Sbjct: 345 KEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAAL 404

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
              R  HG AV   L  +V VG+ LID Y K G +  ++ VF+  +   N + WN++M G
Sbjct: 405 GHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNM-MPTKNLVCWNSLMNG 463

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           Y+  G    V+ +F  L      PD  SF ++L+A    GL  E  K+   M   Y ++P
Sbjct: 464 YSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKP 523

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            LEHY+C+++ +GRAG+L++A  +   +PFEPD+ VW ALL+   +    D+A    ++L
Sbjct: 524 RLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKL 583

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
             + P +   YV+++N+ +  G W EV  +R  M+   ++K  G SWI+VK KV+  LA 
Sbjct: 584 FHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLAC 643

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
           D+ H + + I  K+ E+ EE  + G+ P  D  L +V ++E+ + LW HSEKLA+ FGL+
Sbjct: 644 DKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLL 703

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +  P G  L+++KNLRIC DCH   K+IS    REI +RD NR+H F +G C+CGD W
Sbjct: 704 N-TPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 204/472 (43%), Gaps = 81/472 (17%)

Query: 22  HARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           HAR LKS +Q D  I   LI +YS  N  + +  +   IP P + S+++LI A + + L 
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S+ +F  M  H     +P+   L +LFK CA LS AF  G  +H ++    L    F 
Sbjct: 98  SQSIGVFSRMFSH---GLIPDTHVLPNLFKVCAELS-AFKAGKQIHCVACVSGLDMDAFV 153

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
             +L H Y R     +A+KVFD + E+DVV   A++ G+A+   L + + + ++M  S +
Sbjct: 154 QGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGI 213

Query: 198 GSTM------------------------------YC-----VSGALRAAAELAAMEQCRV 222
              +                              +C     VS  L +  +   +   R 
Sbjct: 214 EPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQ 273

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE---------NLSV-------- 265
           IHG+ +  GL ++  V + ++D YGK+G V    ++FDE         N  +        
Sbjct: 274 IHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGL 333

Query: 266 -----------------LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
                            LN ++W +++AG AQ G     LELF  +++ G  P+  +  +
Sbjct: 334 VDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPS 393

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           +L A  N    G          VR  L   +   + LI    + GR++ ++ +   MP +
Sbjct: 394 MLPACGNIAALGHGRS-THGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTK 452

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
            +   W +L++  ++HGKA     + + L+      D  ++   ++LS  G+
Sbjct: 453 -NLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPD--FISFTSLLSACGQ 501


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 310/563 (55%), Gaps = 15/563 (2%)

Query: 19   RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            R +H + +K+  +   ++NN L+  YSK   L+ +++ F  +    +VSWT+LI+A+   
Sbjct: 674  RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVRE 733

Query: 78   PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             L   ++ +F  M    +    P+  ++ S+   CA   ++   G  +H+   K ++   
Sbjct: 734  GLYDDAIRLFYEM---ESKGVSPDVYSMTSVLHACAC-GNSLDKGRDVHNYIRKNNMALC 789

Query: 135  PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR- 193
                +AL+  Y++  S + A  VF +I  +D+V +  MI G+++NS   ++L +FA+M+ 
Sbjct: 790  LPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK 849

Query: 194  -SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             S   G TM C+   L A   LAA+E  R IHG  + +G    + V   LID Y K G +
Sbjct: 850  ESRPDGITMACL---LPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSL 906

Query: 253  SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
              AR +FD  +   + I W  M++G    G  +  +  F  + + G  PDE +F ++L A
Sbjct: 907  VHARLLFDM-IPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYA 965

Query: 313  LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
              ++GL  E   +   M     +EP LEHY C++  + R G L  A  +   MP +PDA 
Sbjct: 966  CSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDAT 1025

Query: 373  VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            +W ALL    IH   ++A K+ + + ++ P +   YV++AN+ +   +W+EV ++R+ + 
Sbjct: 1026 IWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIG 1085

Query: 433  DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
             R ++K  G SWIEV+GK   F++ D  H + + I++ L  L  + +  G+ P     L 
Sbjct: 1086 KRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALI 1145

Query: 493  NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
            N GD EK  AL  HSEKLA+AFG+++  P G+T+R+ KNLR+C DCHE  K++S+   RE
Sbjct: 1146 NAGDMEKEVALCGHSEKLAMAFGILN-LPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRRE 1204

Query: 553  IVVRDVNRYHRFLNGSCTCGDLW 575
            I++RD NR+H F +G C+C D W
Sbjct: 1205 IILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 156/344 (45%), Gaps = 11/344 (3%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPN-IVSWTALISAHS---NSPLSLNIFLSMLRHPTLS 94
           L+  Y     L    R+F+HI S N +  W  ++S ++   +   S+ +F  M +   L 
Sbjct: 492 LVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQK---LG 548

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
              N  T + + K  A+L         +H    KL         ++L+  Y +    D+A
Sbjct: 549 ITGNSYTFSCILKCFATLGRVGECK-RIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSA 607

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
            K+FDE+ +RDVV + +MI G   N     +L  F  M    VG  +  +  ++ A A +
Sbjct: 608 HKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANV 667

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            ++   R +HG  V +   R V+    L+D Y K G ++DA + F E +     ++W ++
Sbjct: 668 GSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAF-EKMGQKTVVSWTSL 726

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           +A Y ++G     + LF+ +E +G +PD YS  +VL A C  G + +  + +     +  
Sbjct: 727 IAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHA-CACGNSLDKGRDVHNYIRKNN 785

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           +   L     L+    + G +E+A  +   +P + D   W  ++
Sbjct: 786 MALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMI 828



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 184/395 (46%), Gaps = 14/395 (3%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRH 90
           ++ N+LI  Y KS  +  + +LF+ +   ++VSW ++IS    +  S  +L  F+ ML  
Sbjct: 589 TVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQML-- 646

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
             L    +  TL +    CA++  +   G +LH   +K     +    + L+  YS+  +
Sbjct: 647 -ILRVGVDLATLVNSVAACANVG-SLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGN 704

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            ++A + F+++ ++ VV + ++I  + +     D++ +F +M S  V   +Y ++  L A
Sbjct: 705 LNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHA 764

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A   ++++ R +H +   + +   + V   L+D Y K G + +A  VF + + V + ++
Sbjct: 765 CACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQ-IPVKDIVS 823

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WN M+ GY++    +  L+LF  ++     PD  +   +L A C +  A E  + I    
Sbjct: 824 WNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPA-CGSLAALEIGRGIHGCI 881

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD-- 388
           +R      L     LI    + G L  A R+   M  E D   W  ++S   +HG  +  
Sbjct: 882 LRNGYSSELHVANALIDMYVKCGSLVHA-RLLFDMIPEKDLITWTVMISGCGMHGLGNEA 940

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           +A+    R+  I P D+  +  +    S  G  +E
Sbjct: 941 IATFQKMRIAGIKP-DEITFTSILYACSHSGLLNE 974



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 12/217 (5%)

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           I  F +   L +++ +    + S++    Y  S  L+  AE   +++ +++H     +G+
Sbjct: 425 ICKFCEVGDLRNAVELLRMSQKSELDLNAY--SSILQLCAEHKCLQEGKMVHSVISSNGI 482

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
               ++G  L+  Y   G + + RR+FD  LS      WN MM+ YA+ GD    + LF 
Sbjct: 483 PIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFK 542

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC----LISA 348
            ++  G   + Y+F  +L      G  GE ++        YKL  G   Y      LI+ 
Sbjct: 543 KMQKLGITGNSYTFSCILKCFATLGRVGECKRI---HGCVYKL--GFGSYNTVVNSLIAT 597

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
             ++G ++ A ++   +  + D   W +++S   ++G
Sbjct: 598 YFKSGEVDSAHKLFDELG-DRDVVSWNSMISGCVMNG 633


>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 196/571 (34%), Positives = 323/571 (56%), Gaps = 19/571 (3%)

Query: 16  TDPRIVHARALKSSQADRSI-YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T     H+  +KS  ++ +   N+LI  Y +   + ++ +LF+ +P  N+VSWT+L++ +
Sbjct: 41  TSATSTHSNVVKSGLSNDTFATNHLINCYLRLFTIDHAQKLFDEMPHRNVVSWTSLMAGY 100

Query: 75  ---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
                  ++L +F  M    TL  LPN+ T A+L   C+ L++    G  +H+L     L
Sbjct: 101 VSQGQPNMALCLFHQM--QGTL-VLPNEFTFATLINACSILAN-LEIGRRIHALVEVSGL 156

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                  S+L+  Y +    D A+ +FD +  R+VV + +MI  ++QN++   +L +F +
Sbjct: 157 GSNLVACSSLIDMYGKCNHVDEARLIFDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKE 216

Query: 192 MRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
              S +     + +  A+ A A L ++   ++ HG  +  G + + ++ + L+D Y K G
Sbjct: 217 FNHSRLDKPNHFMLCSAVSACASLGSLGSGKITHGVVIRLGHEASDVIASALVDMYAKCG 276

Query: 251 IVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            V+ + ++F   +N SV   I + +M+ G A+ G     L+LF  + +R   P++ +F+ 
Sbjct: 277 CVNYSAKIFRRIQNPSV---IPYTSMIVGAAKYGLGILSLQLFQEMVVRRIKPNDITFVG 333

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           VL A  ++GL  +  + ++ M  +Y + P  +HYTC+   +GR GR+E+A ++A ++  E
Sbjct: 334 VLHACSHSGLVDKGLELLDSMDGKYGVTPDAKHYTCIADMLGRVGRIEEAYQLAKSVQVE 393

Query: 369 PD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
            D  A +W  LLS S ++G+ D+A +   RLI+ N     AYV ++N  +  G W+    
Sbjct: 394 GDGYAMLWGTLLSASRLYGRVDIALEASNRLIESNQQVAGAYVTLSNAYALAGDWENAHN 453

Query: 427 VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD-RMHERTEDIYTKLAELMEECERLGYVP 485
           +R  MK   V KE G SWIE+K   ++F AGD   + +  +I + L EL E  +  GYV 
Sbjct: 454 LRSEMKHTGVYKEPGSSWIEIKESTYLFHAGDISKYTQGREILSLLRELEERMKGRGYVG 513

Query: 486 VWDEMLH-NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKY 544
               ++  +V +  K E +  HSEKLALAFGL++  P+G T+RI+KNLR+CRDCH +FK 
Sbjct: 514 GTKGLVFVDVEEEAKEEIVSMHSEKLALAFGLIN-TPKGVTIRIMKNLRMCRDCHGAFKL 572

Query: 545 ISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IS +VERE+VVRDVNR+H F NG CTCGD W
Sbjct: 573 ISDIVERELVVRDVNRFHHFKNGLCTCGDFW 603


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 192/568 (33%), Positives = 304/568 (53%), Gaps = 14/568 (2%)

Query: 6   NQQPQPQNTSTDPRIVHA-----RALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHI 59
            Q    Q TS     + A     R  KS   D  +    L+  Y+K   L Y+ R+F+ +
Sbjct: 125 QQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 184

Query: 60  PSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
           P+ N V+W+ALI      S    +  +F +ML    L FL +  ++AS  + CASL H  
Sbjct: 185 PARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ-GLCFL-SPTSIASALRACASLDH-L 241

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
             G  LH+L  K  +H     G++L+  Y++    D A  +FDE+  +D V Y A++ G+
Sbjct: 242 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
            QN R  ++  VF  M++ +V      +   + A + LAA++  R  HG  ++ GL    
Sbjct: 302 VQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 361

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            +   LID Y K G +  +R+VF+  +   + ++WN M+AGY   G       LF  +  
Sbjct: 362 SICNALIDMYAKCGRIDLSRQVFNM-MPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 420

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            GF PD  +F+ +L+A  ++GL  E + W   M   Y L P +EHY C++  + R G L+
Sbjct: 421 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 480

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A     +MP   D  VW ALL    ++   D+  K+ + + ++ P     +V+++N+ S
Sbjct: 481 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 540

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
             GR+DE AEVR + K +  +K  G SWIE+ G +H F+ GD+ H ++ +IY +L  ++ 
Sbjct: 541 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILV 600

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
             ++LGY P    +L ++ + EK +AL  HSEKLA+A+G++S     KT+ + KNLR+C 
Sbjct: 601 GIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILS-LSEDKTIFVTKNLRVCG 659

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRF 564
           DCH   K+IS V  R I+VRD NR+H F
Sbjct: 660 DCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 193/423 (45%), Gaps = 33/423 (7%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H  A+ +  QAD  +   L+  Y K   L  +  +F  +P+ ++V+W A+++ +++ 
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 89

Query: 78  P---------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
                     LS+ + +  LR       PN  TL +L    A    A   G S+H+  ++
Sbjct: 90  GMYHHAVAHLLSMQMQMHRLR-------PNASTLVALLPLLAQQG-ALAQGTSVHAYCIR 141

Query: 129 LSLH----------DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
             LH          D    G+AL+  Y++  S   A++VFD +  R+ V + A+I GF  
Sbjct: 142 ACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVL 201

Query: 179 NSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
            SR+  +  +F  M +  +   +   ++ ALRA A L  +     +H     SG+  ++ 
Sbjct: 202 CSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLT 261

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
            G  L+  Y KAG++  A  +FDE ++V ++++++A+++GY Q G       +F  ++  
Sbjct: 262 AGNSLLSMYAKAGLIDQAIALFDE-MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC 320

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
              PD  + ++++ A C+   A +  +      +   L         LI    + GR++ 
Sbjct: 321 NVEPDAATMVSLIPA-CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDL 379

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLS 416
           + ++   MP   D   W  +++   IHG    A+ +   + ++  P D   ++ + +  S
Sbjct: 380 SRQVFNMMP-SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 438

Query: 417 GVG 419
             G
Sbjct: 439 HSG 441



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 148/343 (43%), Gaps = 32/343 (9%)

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           MLRH      PN  T     K C++L+     G ++H  ++   L    F  +AL+  Y 
Sbjct: 1   MLRH---RVAPNNYTFPFALKACSALADHHC-GRAIHRHAIHAGLQADLFVSTALLDMYV 56

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-----RSSDVGSTM 201
           +     +A  +F  +  RD+V + AM+ G+A +     +++    M     R     ST+
Sbjct: 57  KCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTL 116

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN----------VIVGTGLIDGYGKAGI 251
             +   L   A+  A+ Q   +H + + + L  N          V++GT L+D Y K G 
Sbjct: 117 VAL---LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGS 173

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG---FAPDEY-SFL 307
           +  ARRVFD  +   N + W+A++ G+      +    LF  +  +G    +P    S L
Sbjct: 174 LLYARRVFDA-MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASAL 232

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
               +L +  +  +    + +  V   L  G      L+S   +AG ++ A  +   M  
Sbjct: 233 RACASLDHLRMGEQLHALLAKSGVHADLTAG----NSLLSMYAKAGLIDQAIALFDEMAV 288

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           + D   + AL+S    +G+A+ A  + K++   N   D+A ++
Sbjct: 289 K-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 330


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/529 (34%), Positives = 293/529 (55%), Gaps = 12/529 (2%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           R F+ IP+PN V  TA+ S    + L   +L+IF SM+   +   +     L +L  +  
Sbjct: 145 RAFDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASAR 204

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD--NAKKVFDEIRERDVVC 168
                   G+  H+L  K+ L  +    + ++  Y++    D   A+K+FD + +RDVV 
Sbjct: 205 VPDRGITGGI--HALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFD-MMDRDVVS 261

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMR--SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
           +  MI  +AQN    ++L +++ M     DV      +S  L A A   A++  + IH  
Sbjct: 262 WNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQ 321

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
            V  GL+ NV VGT ++D Y K G V  A + F + +   N ++W+AM+AGY   G    
Sbjct: 322 VVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAF-QKIKGKNILSWSAMIAGYGMHGYGQE 380

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            L +F  +   G  P+  +F+ VL A  +AGL  E   W   MK  + +EPG+EHY C++
Sbjct: 381 ALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMV 440

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
             +GRAG L++A  +   M  +PDAA+W ALLS   I+   ++A    +RL +++  +  
Sbjct: 441 DLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNSG 500

Query: 407 AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
            YV+++N+ +  G W EV  +R ++K R + K  G S +E+KGK H+F  GD+ H + ++
Sbjct: 501 YYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKE 560

Query: 467 IYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTL 526
           IY  L +L+E     GYVP    +LH++   E+   L  HSEKLA+AF L++   +G  +
Sbjct: 561 IYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERESMLRIHSEKLAVAFALMNSV-QGSVI 619

Query: 527 RIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            ++KNLR+C DCH + K I+++  REI++RD+ R+H F +G C+CGD W
Sbjct: 620 HVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 133/276 (48%), Gaps = 15/276 (5%)

Query: 119 GLSLHSLSLKLSLH-DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
           G  LH L+L+  L     +C SAL+H Y     P +A++ FDEI   + V   AM  G  
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG--HAVVS--GLD 233
           +N+ +  +LS+F  M +S  GS       A   A   +A    R I G  HA+VS  GLD
Sbjct: 167 RNNLVYTTLSIFRSMVAS--GSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLD 224

Query: 234 RNVIVGTGLIDGYGKAG--IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
               V   +ID Y K G   +  AR++FD  +   + ++WN M+A YAQ G  +  L L+
Sbjct: 225 GQTGVANTIIDAYAKGGGHDLGAARKLFD--MMDRDVVSWNTMIALYAQNGLSTEALGLY 282

Query: 292 HLLEMRG--FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
             + + G     +  +  AVL A  +AG A ++ K I    VR  LE  +   T ++   
Sbjct: 283 SKMLIVGGDVRCNAVTLSAVLLACAHAG-AIQTGKRIHNQVVRMGLEDNVYVGTSVVDMY 341

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
            + G++E A +    +  + +   W A+++   +HG
Sbjct: 342 SKCGKVEMAWKAFQKIKGK-NILSWSAMIAGYGMHG 376


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 189/559 (33%), Positives = 298/559 (53%), Gaps = 51/559 (9%)

Query: 58  HIPSPNIVS--WTALISAHSNS-------PLSLNIFLSMLRHPTLSFLPNQRTLASLFKT 108
           H+  PNI S  W  LI A + S       P +L+++L M  H   + LP+  T   L ++
Sbjct: 16  HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLH---AVLPDLHTFPFLLQS 72

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR------ 162
             +       G  LH+  L L L + PF  ++L++ YS   +P  A++ FDEI       
Sbjct: 73  INTPHR----GRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPS 128

Query: 163 -------------------------ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS--- 194
                                    E++V+ +  MI G+        +LS+F  +++   
Sbjct: 129 WNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEG 188

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           S +    + +S  L A A L A++  + +H +   +G+  +V++GT LID Y K G +  
Sbjct: 189 SQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIER 248

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A+ +FD      + +AW+AM+  ++  G     LELF  +   G  P+  +F+AVL A  
Sbjct: 249 AKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACV 308

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           + GL  E  ++ +RM   Y + P ++HY C++    RAGR+EDA  +  +MP EPD  +W
Sbjct: 309 HGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIW 368

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL+ + IHG  +       +L++++P + SAYV+++NV + +GRW EV  +R +M+ R
Sbjct: 369 GALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVR 428

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++K  G S +EV G +  F AGD  H    ++Y  L E+M+  E+ GY     E+L ++
Sbjct: 429 GIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDL 488

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            +  K  AL  HSEKLA+A+  +  +P G T+RIVKNLRIC DCH + K IS+   REI+
Sbjct: 489 DEEGKEFALSLHSEKLAIAYCFLRTSP-GTTIRIVKNLRICSDCHVAIKIISKEFNREII 547

Query: 555 VRDVNRYHRFLNGSCTCGD 573
           VRD NR+H F NG C+C D
Sbjct: 548 VRDCNRFHHFKNGLCSCKD 566



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 29/297 (9%)

Query: 29  SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFL 85
           +Q D   +N +I   +K+ ++  + +LF+ +P  N++SW+ +I  + +      +L++F 
Sbjct: 122 TQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFR 181

Query: 86  SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY 145
           S+         PN+ T++S+   CA L  A   G  +H+   K  +      G++L+  Y
Sbjct: 182 SLQTLEGSQLRPNEFTMSSVLSACARLG-ALQHGKWVHAYIDKTGMKIDVVLGTSLIDMY 240

Query: 146 SRFRSPDNAKKVFDEI-RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           ++  S + AK +FD +  E+DV+ + AMI  F+ +    + L +FA M           V
Sbjct: 241 AKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARM-----------V 289

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLD-----------RNVIVGTG-LIDGYGKAGIV 252
           +  +R  A       C  +HG  V  G +             +I   G ++D Y +AG +
Sbjct: 290 NDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRI 349

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV-LELFHLLEMRGFAPDEYSFLA 308
            DA  V        + + W A++ G    GD  T  + +  LLE+       Y  L+
Sbjct: 350 EDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLS 406


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 302/556 (54%), Gaps = 15/556 (2%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
           +SS  D   Y  LIT Y+    ++ + ++F+ IP  ++VSW A+IS ++   N+  +L +
Sbjct: 148 QSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALEL 207

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M++    +  P++ T+ S+   CA  S +   G  +HS              +AL+ 
Sbjct: 208 FKEMMK---TNVRPDESTMVSVVSACAQ-SASIELGRQVHSWIDDHGFGSNLKIVNALID 263

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y +    + A  +F+ +  +DV+ +  +I G+   +   ++L +F +M  S        
Sbjct: 264 LYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 323

Query: 204 VSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           +   L A A L A+E  R IH +    + G+       T LID Y K G +  A++VFD 
Sbjct: 324 MLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFD- 382

Query: 262 NLSVLNSI--AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
             S+LN    +WNAM+ G+A  G  +   ++F  +      PD+ +F+ +L+A  ++G+ 
Sbjct: 383 --SILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGML 440

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
                    MK  YK+ P LEHY C+I  +G +G  ++AE +   M  EPD  +W +LL 
Sbjct: 441 DLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLK 500

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +HG  ++     + LI I P +  +YV+++N+ +  GRW+EVA++R ++ D+ ++K 
Sbjct: 501 ACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKV 560

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S IE+   VH F+ GD+ H R  +IY  L E+    E  G+VP   E+L  + +  K
Sbjct: 561 PGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWK 620

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             AL +HSEKLA+AFGL+S  P G  L IVKNLR+CR+CHE+ K IS++ +REI+ RD  
Sbjct: 621 EGALRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRT 679

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+C D W
Sbjct: 680 RFHHFRDGVCSCNDYW 695



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 213/467 (45%), Gaps = 70/467 (14%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNL------------LSYSLRLFNHIPSPNIVS 66
           R++HA+ +K+      ++N   TNY+ S L            L Y++ +F  I  PN++ 
Sbjct: 4   RMIHAQMIKTG-----LHN---TNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLI 55

Query: 67  WTALISAH--SNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           W  +   H  S+ P+S L +++ M+   +L  LPN  T   L K+CA  S AF  G  +H
Sbjct: 56  WNTMFRGHALSSDPVSALYLYVCMI---SLGLLPNCYTFPFLLKSCAK-SKAFREGQQIH 111

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
              LKL      +  ++L+  Y +    ++A+KVFD+   RDVV Y A+I G+A    + 
Sbjct: 112 GHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIA 171

Query: 184 DSLSVFADMRSSDVGSTMYCVSG-------------------------------ALRAAA 212
            +  +F ++   DV S    +SG                                + A A
Sbjct: 172 SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACA 231

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           + A++E  R +H      G   N+ +   LID Y K G V  A  +F E LS  + I+WN
Sbjct: 232 QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF-EGLSYKDVISWN 290

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE-RMKV 331
            ++ GY         L LF  +   G +P++ + L++L A  + G A E  +WI   +  
Sbjct: 291 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLG-AIEIGRWIHVYINK 349

Query: 332 RYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA--- 387
           R K +     H T LI    + G +E A+++  ++      + W A++   A+HG+A   
Sbjct: 350 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRANAA 408

Query: 388 -DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
            D+ S+M K   +I P DD  +V + +  S  G  D    + + MK+
Sbjct: 409 FDIFSRMRKN--EIEP-DDITFVGLLSACSHSGMLDLGRHIFRSMKE 452



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 120/310 (38%), Gaps = 59/310 (19%)

Query: 221 RVIHGHAVVSGLDRNVIVGTGLI---------DGYGKAGIVSDARRVFDENLSVLNSIAW 271
           R+IH   + +GL       + LI         DG      +  A  VF E +   N + W
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDG------LPYAISVF-ETIQEPNLLIW 56

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N M  G+A   D  + L L+  +   G  P+ Y+F  +L + C    A    + I    +
Sbjct: 57  NTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS-CAKSKAFREGQQIHGHVL 115

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           +   +  L  +T LIS   + GRLEDA ++        D   + AL++  A  G    A 
Sbjct: 116 KLGYDLDLYVHTSLISMYVQNGRLEDARKV-FDQSSHRDVVSYTALITGYASKGYIASAQ 174

Query: 392 KMGKRLIDINPYDDSAYVIVAN-VLSG---VGRWDEVAEVRKVMKDRRVRK--------- 438
           KM     D  P  D   V+  N ++SG    G   E  E+ K M    VR          
Sbjct: 175 KM----FDEIPIKD---VVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVV 227

Query: 439 ---------EGGR---SWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC---ERLGY 483
                    E GR   SWI+  G    F +  ++     D+Y K  E+   C   E L Y
Sbjct: 228 SACAQSASIELGRQVHSWIDDHG----FGSNLKIVNALIDLYIKCGEVETACGLFEGLSY 283

Query: 484 VPV--WDEML 491
             V  W+ ++
Sbjct: 284 KDVISWNTLI 293


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 302/560 (53%), Gaps = 40/560 (7%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   ++S   A+  + + L+  YSK   LS + R+   +   + VSW ++I       L
Sbjct: 262 VHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGL 321

Query: 80  ---SLNIFLSM-LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              +L++F  M LRH  +    ++ T  S+   C S        +S+HSL +K       
Sbjct: 322 GEEALSLFRIMHLRHMKI----DEFTYPSVL-NCFSFVMDMRNAMSVHSLIVKTGFEAYK 376

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +ALV  Y++    D A  VF+++ ++DV+ + +++ G   N    ++L +F +MR  
Sbjct: 377 LVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 436

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +      ++  L A AEL  +E  + +H + + SGL  ++ V   L+  Y K G + DA
Sbjct: 437 GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 496

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VFD ++ + + I W A++ GYAQ G              RG                +
Sbjct: 497 NKVFD-SMEIQDVITWTALIVGYAQNG--------------RGRD--------------H 527

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL      + + M+  Y ++PG EHY C+I  +GR+G+L +A+ +   M  +PDA VW+
Sbjct: 528 AGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWK 587

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ALL+   +HG  ++  +    L ++ P +   YV+++N+ S  G+W+E A+ R++MK R 
Sbjct: 588 ALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRG 647

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           V KE G SWIE+  KVH F++ DR H RT +IY+K+ E+M   +  GYVP  +  LH++ 
Sbjct: 648 VSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMD 707

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           +  K   L YHSEKLA+AFGL++  P G  +RI KNLRIC DCH + KY+S V  R +++
Sbjct: 708 EEGKELGLAYHSEKLAVAFGLLT-MPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVIL 766

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD N +H F  G+C+C D W
Sbjct: 767 RDSNCFHHFREGACSCSDYW 786



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 190/412 (46%), Gaps = 19/412 (4%)

Query: 13  NTSTDPRIVHARALKSSQADRS--IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           N S   R+  AR L     DR    +N +I  Y+ S  L+ + +LF   P  + ++W++L
Sbjct: 50  NLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSL 109

Query: 71  ISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
           IS +        +L +F  M         PNQ T  S+ + C S+      G  +H+ ++
Sbjct: 110 ISGYCRYGCDVEALELFWEMQYEGE---RPNQFTWGSVLRVC-SMYVLLEKGKQIHAHAI 165

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD-EIRERDVVCYGAMIVGFAQNSRLVDSL 186
           K       F  + LV  Y++ +    A+ +F+    +R+ V + AM+ G++QN     ++
Sbjct: 166 KTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAI 225

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
             F DMR   +    +     L A   ++A      +HG  V SG   NV VG+ L+D Y
Sbjct: 226 ECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMY 285

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            K G +S+ARR+  E + V + ++WN+M+ G  +QG     L LF ++ +R    DE+++
Sbjct: 286 SKCGDLSNARRML-ETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTY 344

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
            +VL    +  +   +   +  + V+   E        L+    + G  + A  +   M 
Sbjct: 345 PSVLNCF-SFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMT 403

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKM--GKRLIDINPYDDSAYVIVANVLS 416
            + D   W +L++    +G  + A ++    R++ I+P      +++A VLS
Sbjct: 404 -DKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHP----DQIVIAAVLS 450



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 159/369 (43%), Gaps = 6/369 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSP 78
           +HA A+K+   ++  +   L+  Y+K   +  +  LF   P   N V WTA+++ +S + 
Sbjct: 160 IHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNG 219

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
                              NQ T  S+   C S+S A  FG  +H   ++       F G
Sbjct: 220 DGHKAIECFRDMRGEGIECNQFTFPSILTACGSIS-ACGFGAQVHGCIVRSGFGANVFVG 278

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           SALV  YS+     NA+++ + +   D V + +MIVG  +     ++LS+F  M    + 
Sbjct: 279 SALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMK 338

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
              +     L   + +  M     +H   V +G +   +V   L+D Y K G    A  V
Sbjct: 339 IDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDV 398

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E ++  + I+W +++ G    G     L LF  + + G  PD+    AVL+A C    
Sbjct: 399 F-EKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA-CAELT 456

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E  K +    ++  L   L     L+S   + G +EDA ++  +M  + D   W AL+
Sbjct: 457 VLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQ-DVITWTALI 515

Query: 379 SFSAIHGKA 387
              A +G+ 
Sbjct: 516 VGYAQNGRG 524


>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 194/562 (34%), Positives = 306/562 (54%), Gaps = 17/562 (3%)

Query: 22  HARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIVSWTALISAHSNSPLS 80
           H  A+ SS A   + ++L+T Y++ +L   SLR F  +P SP+  +W++LIS+ + + L 
Sbjct: 46  HLPAVASSHA--LLAHHLLTFYARCSLPELSLRAFLDLPASPSPAAWSSLISSFAQNGLP 103

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASL---SHAFLFGLSLHSLSLKLSLHDKPFC 137
              F +  R          R++    K  A+    S   L   +LH L+ K       F 
Sbjct: 104 AAAFDAFRRMLAAGVPATDRSIPPAAKAVAAAADSSRPPLAPHALHGLASKTPFAGDVFV 163

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           GSA++  Y++  +  +A++VFDE+ ER+VV + A+I G+A       +L +F       V
Sbjct: 164 GSAVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIGGYADAGMHPSALCIFRSALEEAV 223

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               + VS  +R  A     E    +H  ++ + LD +  VG+ L+  Y K G+V  A R
Sbjct: 224 QVNDFTVSCIVRVCAAATLFELGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDCAYR 283

Query: 258 VF----DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           VF    + NL +     WNA++   AQ G  ST  E F  ++  GF P+  +FL +LTA 
Sbjct: 284 VFSAAPERNLGI-----WNAVLIASAQHGHTSTAFERFTKMQHAGFRPNFITFLCLLTAC 338

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            +AGL  E +++   MK  Y++EP +EHY  ++  +GR GR+ +A  +  +MP EP  +V
Sbjct: 339 SHAGLVDEGKRYFSLMK-EYRIEPEVEHYAAMVDLLGRVGRITEALDLIESMPMEPPDSV 397

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL    +   AD A+   KRL +       A++++++  +  GR  + A  RK M+D
Sbjct: 398 WGALLMACRMFKDADTAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHVDAALARKAMRD 457

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
             +RKE G SW+E  G+VH F++  R H R+ +IY  L ++ E+    GYV     ++ +
Sbjct: 458 AGIRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMAVAGYVADTSAVVKD 517

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V   EK  +L YHSE+LA+A GL+   P G  +R++KNLR+C DCH + KY+S+   R +
Sbjct: 518 VDRDEKCASLGYHSERLAIALGLLI-VPEGVPIRVMKNLRVCDDCHNAVKYLSKCTGRVV 576

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           V+RD  R+HRF +G C+CGD W
Sbjct: 577 VLRDNRRFHRFEDGLCSCGDFW 598


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 187/581 (32%), Positives = 311/581 (53%), Gaps = 48/581 (8%)

Query: 34   SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
            S+ N+LI+ +S  + +  +  +F+H+   +I+SW A+ISA+++  L   SL  F  M RH
Sbjct: 512  SVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWM-RH 570

Query: 91   PTLSFLPNQR--TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                 L N+   T  S   +  S      +G  +H L +KL L       + L+  YS  
Sbjct: 571  -----LHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEA 625

Query: 149  RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM---------------- 192
               ++A+ VF  + ERD++ + +M+  + Q+ + +D L + A++                
Sbjct: 626  GRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIG 685

Query: 193  ------------------RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
                              R   + +  Y    +L A A LA +E+ + +HG  +  G + 
Sbjct: 686  GHAENEEPNEAVKAYKLIREKGIPAN-YITMVSLAATANLAVLEEGQQLHGLVIKLGFES 744

Query: 235  NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
            ++ V    +D YGK G + D  ++  + ++  + ++WN +++ +A+ G      E FH +
Sbjct: 745  DLHVTNAAMDMYGKCGEMHDVLKMLPQPIN-RSRLSWNILISAFARHGCFQKARETFHEM 803

Query: 295  EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
               G  PD  +F+++L+A  + GL  E   + + M   + + PG+EH  C+I  +GR+GR
Sbjct: 804  LKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGR 863

Query: 355  LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414
            L  AE     MP  P+   WR+LL+   IHG  ++A K  + L++++P DDSAYV+ +NV
Sbjct: 864  LSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNV 923

Query: 415  LSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAEL 474
             +  G+W++V  +RK M    ++K+   SW+++K KVH F  G++ H +   I  KL EL
Sbjct: 924  CATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGEL 983

Query: 475  MEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRI 534
            M+  +  GYVP     LH++ + +K   LW HSE+LALAFGL++  P   TLRI KNLR+
Sbjct: 984  MKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLIN-TPESSTLRIFKNLRV 1042

Query: 535  CRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            C DCH  +K++S +V R+IV+RD  R+H F  G C+CGD W
Sbjct: 1043 CGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 193/458 (42%), Gaps = 51/458 (11%)

Query: 23  ARALKSSQADRSIY---NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           + AL +  A   IY   N LI  Y+KS  +  + R F+ +   N++SWT+LIS ++    
Sbjct: 262 STALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGY 321

Query: 80  S----LNIFLSMLRHPT-----------------------------LSFLPNQRTLASLF 106
                       +RH                               L   PN   +ASL 
Sbjct: 322 GHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLI 381

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166
             C+   +    G  +H   +K  +    + G+ALVHFY       NA+K+F+E+ + +V
Sbjct: 382 TACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNV 441

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
           V + +++VG++ +    + L+V+  MR   V       +    +   L        + GH
Sbjct: 442 VSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGH 501

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
            +  G + +V V   LI  +     V +A  VFD +++  + I+WNAM++ YA  G    
Sbjct: 502 IIQYGFEDSVSVANSLISMFSSFSSVEEACYVFD-HMNECDIISWNAMISAYAHHGLCRE 560

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW---IERMKVRYKLEPGLEHYT 343
            L  FH   MR    +  S    L++L +   + ++ KW   I  + V+  L+  +    
Sbjct: 561 SLRCFHW--MRHLHNETNS--TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICN 616

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
            L++    AGR EDAE +  AM  E D   W ++++     GK     K+   L+ +   
Sbjct: 617 TLLTLYSEAGRSEDAELVFQAMT-ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKP 675

Query: 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
           D     +  N L  +G   E  E  + +K  ++ +E G
Sbjct: 676 DR----VTWNAL--IGGHAENEEPNEAVKAYKLIREKG 707



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 184/433 (42%), Gaps = 46/433 (10%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   +K+    D  +   L+  Y    L+  + +LF  +P  N+VSWT+L+  +S+S  
Sbjct: 397 VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 456

Query: 80  S---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               LN++  M R   +S   NQ T A++  +C  L    L G  +    ++    D   
Sbjct: 457 PGEVLNVYQRM-RQEGVS--GNQNTFATVTSSCGLLEDQVL-GYQVLGHIIQYGFEDSVS 512

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  +S F S + A  VFD + E D++ + AMI  +A +    +SL  F  MR   
Sbjct: 513 VANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLH 572

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
             +    +S  L   + +  ++  R IHG  V  GLD NV +   L+  Y +AG   DA 
Sbjct: 573 NETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAE 632

Query: 257 RVFD------------------------ENLSVL---------NSIAWNAMMAGYAQQGD 283
            VF                         + L +L         + + WNA++ G+A+  +
Sbjct: 633 LVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEE 692

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
            +  ++ + L+  +G  P  Y  +  L A  N  +  E ++ +  + ++   E  L    
Sbjct: 693 PNEAVKAYKLIREKGI-PANYITMVSLAATANLAVLEEGQQ-LHGLVIKLGFESDLHVTN 750

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
             +   G+ G + D  ++ +  P       W  L+S  A HG    A +    ++ + P 
Sbjct: 751 AAMDMYGKCGEMHDVLKM-LPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK 809

Query: 404 DDSAYVIVANVLS 416
            D  +V   ++LS
Sbjct: 810 PD--HVTFVSLLS 820



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 174/461 (37%), Gaps = 103/461 (22%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH 90
           +D  +   LI  Y K   +  +  +F+ +P  ++VSWTA++S +S +             
Sbjct: 63  SDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQN------------- 109

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
                                   AF+    +    +K +         ALV F+S+   
Sbjct: 110 -------------------GRFEKAFVLFSDMRHCGVKAN--------HALVDFHSKCGK 142

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            ++A  +F  + ERDVV + AMI G+A      DS  +F  M    +    Y +   LRA
Sbjct: 143 MEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRA 202

Query: 211 AAELAAMEQCRVIHG---------HAVVSGLDRNV------------------------- 236
           +AE   +     IHG         + +V+GL  N                          
Sbjct: 203 SAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSS 262

Query: 237 -------------IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
                         +G  LID Y K+G + DA+R FDE +   N I+W ++++GYA+ G 
Sbjct: 263 TALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDE-MEEKNVISWTSLISGYAKHGY 321

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
                  +   EMR    +E S+  +L+     GL  E+     +M     +EP      
Sbjct: 322 GHMAHARYVFDEMR--HRNEASWSTMLSGYVRVGLYEEAVGLFCQM-WGLGVEPNGFMVA 378

Query: 344 CLISAMGRAGRLED----AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
            LI+A  R+G + D         +      D  V  AL+ F    G    A K+ + + D
Sbjct: 379 SLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPD 438

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
            N       V   +++ G        EV  V +  R+R+EG
Sbjct: 439 HN------VVSWTSLMVGYSDSGNPGEVLNVYQ--RMRQEG 471



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 42/181 (23%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L+   +  A +Q  +IH H + +G   ++ + T LI  Y K G V  AR VFD  +   +
Sbjct: 37  LQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFD-GMPERS 95

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W AM++GY+Q G       LF   +MR                              
Sbjct: 96  VVSWTAMVSGYSQNGRFEKAFVLFS--DMR------------------------------ 123

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
                     G++    L+    + G++EDA  +   M  E D   W A++   A+ G A
Sbjct: 124 --------HCGVKANHALVDFHSKCGKMEDASYLFGTM-MERDVVSWNAMIGGYAVQGFA 174

Query: 388 D 388
           D
Sbjct: 175 D 175


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 308/563 (54%), Gaps = 16/563 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIVSWTALISA--- 73
           R +H+  LK    +  ++   L+  Y+K+  L  +L +F  +  S N+VSWTA+I     
Sbjct: 278 RQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQ 337

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + + PL+  +F S +R   ++  PN  T    + T  ++S A  F   +H+  +K +   
Sbjct: 338 NGDIPLAAALF-SRMREDGVA--PNDLT----YSTILTVSEAS-FPPQIHAQVIKTNYEC 389

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
            P  G+AL+  YS+  S + A  +F  I ++DVV + AM+  +AQ      + + F  M 
Sbjct: 390 TPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMT 449

Query: 194 SSDVGSTMYCVSGALRAAAELAA-MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
              +    + +S A+ A A  AA ++  R  H  ++       + V + L+  Y + G +
Sbjct: 450 MHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSI 509

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +A+ VF E  +  + ++WN+M++GYAQ G     L++F  +E+ G   D  +FL+V+  
Sbjct: 510 ENAQCVF-ERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMG 568

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  E +++ + M   Y + P ++HY C++    RAG+L++   +   MPF     
Sbjct: 569 CAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPT 628

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +WRALL    +H   ++     ++L+ + P D + YV+++N+ S  G+W E  EVRK+M 
Sbjct: 629 IWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMD 688

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            ++VRKE G SWI++K KVH F+A D+ H  +E IY KL  +  + ++ GY P    + H
Sbjct: 689 TKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPH 748

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V + +K   L  HSE+LALAFGL++  P    L I KNLR+  D H   K +S + +RE
Sbjct: 749 DVAEDQKEAMLAMHSERLALAFGLIA-TPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDRE 807

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IV+RD  R+H F +G C+CGD W
Sbjct: 808 IVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 152/338 (44%), Gaps = 7/338 (2%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
           ++F  +   N+V+WT+L++ +  + + L++     R       PN  T +S+    AS  
Sbjct: 112 KVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQG 171

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
              L G  +H+ S+K       F  ++L++ Y++    + A+ VF  +  RD+V +  ++
Sbjct: 172 MVDL-GQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLM 230

Query: 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
            G   N R +++L +F D RSS    T    S  +   A L  +   R +H   +  G  
Sbjct: 231 AGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFH 290

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
               V T L+D Y KAG +  A  VF       N ++W AM+ G  Q GD      LF  
Sbjct: 291 SYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSR 350

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           +   G AP++ ++  +LT +  A    +    +  +K  Y+  P +   T L+ +  +  
Sbjct: 351 MREDGVAPNDLTYSTILT-VSEASFPPQIHAQV--IKTNYECTPTVG--TALMVSYSKLC 405

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
             E+A  I   M  + D   W A+L+  A  G  + A+
Sbjct: 406 STEEALSI-FKMIDQKDVVSWSAMLTCYAQAGDCNGAT 442


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/570 (31%), Positives = 309/570 (54%), Gaps = 16/570 (2%)

Query: 17  DPRIVHA-RALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP--NIVSWTALISA 73
           D R++H+  AL   +++  + N ++T Y +   +  + ++F+ +     ++VSW  ++S 
Sbjct: 178 DGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLST 237

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + ++    +   ++  +  +   P++ T  SL   C+S     L G  LH   +   L  
Sbjct: 238 YVHNDRGKD---AIQLYQRMQLRPDKVTYVSLLSACSSAEDVGL-GRVLHKQIVNDELEK 293

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM- 192
               G+ALV  Y++  S   A+ VFD++ +R ++ +  +I  + +   + ++  +F  M 
Sbjct: 294 NVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQML 353

Query: 193 ------RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
                  S  V          L A A+++A+EQ +++   A   GL  +  VGT +++ Y
Sbjct: 354 ELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLY 413

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
           GK G + +ARR+FD   S  +   WNAM+A YAQ G     L+LF  +EM G  PD +SF
Sbjct: 414 GKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSF 473

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           +++L A  + GL  + + +   M   Y+ +   ++H+ C+   +GR GRL++AE     +
Sbjct: 474 VSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKL 533

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           P +PDA  W +LL+    H     A ++  +L+ + P   + YV ++N+ + + +W  VA
Sbjct: 534 PVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVA 593

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           +VRK M ++ V+KE G S IE+   +H F  GD  H R  +I  +LA+L  + +  GYVP
Sbjct: 594 KVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVP 653

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
               +LH V ++EK   L+ HSE+LA+A GL+S  P G  LR+ KNLR+C DCH + K I
Sbjct: 654 DTKMVLHFVDEQEKERLLFSHSERLAIALGLIS-TPLGTPLRVTKNLRVCSDCHTATKLI 712

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S++  R+IVVRD  R+H F +G C+C D W
Sbjct: 713 SKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 179/382 (46%), Gaps = 24/382 (6%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIVSWTALISAHSNSPLSLNIFLSML 88
           + D  + N L+  Y K   LS++ R+F  +  + N++SW+ +  AH+   L  N++   L
Sbjct: 90  EIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHA---LHGNVW-EAL 145

Query: 89  RHPTLSFL----PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
           RH     L      +  + ++   C+S +     G  +HS         +    +A++  
Sbjct: 146 RHFRFMLLLGIKATKSAMVTILSACSSPA-LVQDGRMIHSCIALSGFESELLVANAVMTM 204

Query: 145 YSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
           Y R  + + A+KVFD + E  RDVV +  M+  +  N R  D++ ++  M+      T  
Sbjct: 205 YGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQLRPDKVTYV 264

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
            +  A  +A ++      RV+H   V   L++NVIVG  L+  Y K G  ++AR VFD+ 
Sbjct: 265 SLLSACSSAEDVGLG---RVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDK- 320

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEM------RGFAPDEYSFLAVLTALCN 315
           +   + I+W  +++ Y ++   +    LF  +LE+      +   PD  +F+ +L A C 
Sbjct: 321 MEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNA-CA 379

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
              A E  K +        L       T +++  G+ G +E+A RI  A+   PD  +W 
Sbjct: 380 DVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWN 439

Query: 376 ALLSFSAIHGKADMASKMGKRL 397
           A+++  A  G++  A K+  R+
Sbjct: 440 AMIAVYAQFGQSHEALKLFWRM 461



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 124/283 (43%), Gaps = 9/283 (3%)

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y+   SP +AK  FD + +R++  +  ++  FA + +  ++L     MR   V      
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
              AL +  +  ++     IH   V S L+ +  V   L++ Y K G +S A+RVF +  
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              N I+W+ M   +A  G+    L  F  + + G    + + + +L+A C++    +  
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSA-CSSPALVQDG 179

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE-PDAAVWRALLSFSA 382
           + I         E  L     +++  GR G +E+A ++  AM     D   W  +LS   
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANVLS-----GVGR 420
            + +   A ++ +R+  + P D   YV + +  S     G+GR
Sbjct: 240 HNDRGKDAIQLYQRM-QLRP-DKVTYVSLLSACSSAEDVGLGR 280


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 172/480 (35%), Positives = 276/480 (57%), Gaps = 4/480 (0%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P++ T+ SL   CA L +    G  LHS S +L L +     +A++  Y +    ++A++
Sbjct: 9   PDEVTMVSLVPACAQLGN-LERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQE 67

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF+ IRE+DV+ + +M+ G A++    +SL++F  M+   +      + G L A A+  A
Sbjct: 68  VFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGA 127

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           ++Q + IH       ++ ++++ T L+D Y K G +  A +VF   + V N   WNAM+ 
Sbjct: 128 LDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVF-RRMRVRNVFTWNAMIG 186

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
           G A  G     + LF  +E     PD+ +F+A+L A  +AGL  E     + MK ++++E
Sbjct: 187 GLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIE 246

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
           P +EHY C++  + RA +++DA      MP + ++ +W  LL      G  D+A K+ +R
Sbjct: 247 PRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRR 306

Query: 397 LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLA 456
           +I++ P     YV+++N+ +GV +WD   ++RK MK++ + K  G SWIE+ G +H F+A
Sbjct: 307 VIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVA 366

Query: 457 GDRMHERTEDIYTKLAELMEECE-RLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
           GDR H +TE IY  + E+        G+VP    +L ++ + EK  +L+ HSEKLA+A G
Sbjct: 367 GDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALG 426

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           L+S  P G  +RIVKNLR+C DCH   K  S+V  REIV RD +R+H F  GSC+C D W
Sbjct: 427 LIS-TPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRH 90
           S+ N ++  Y K + +  +  +FN I   +++SWT+++S  + S     SL +F  M  H
Sbjct: 47  SVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLH 106

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
                 P++ TL  +   CA  + A   G  +H L  K  ++      +ALV  Y++  S
Sbjct: 107 ---KIEPDEITLVGVLSACAQ-TGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGS 162

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            D A +VF  +R R+V  + AMI G A +    D++S+F  M
Sbjct: 163 IDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQM 204


>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 191/597 (31%), Positives = 313/597 (52%), Gaps = 43/597 (7%)

Query: 3   LDLNQQPQPQNTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS 61
           +DL QQ            VH  ++K  +    S+ N+L   Y KS  L   LR F   P 
Sbjct: 11  IDLGQQ------------VHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPD 58

Query: 62  PNIVSWTALISAHSNSP----LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
            N+++WT +IS+ +       L L++FL ML       +PN+ TL S+   C +     L
Sbjct: 59  KNVITWTTMISSCAEDENYLDLGLSLFLDMLEG---GVMPNEFTLTSVMSLCGARLDMSL 115

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G  + +   K+         ++ ++ Y R    D A ++F+E+    ++ + AMI G+A
Sbjct: 116 -GKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYA 174

Query: 178 Q-----------NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
           Q            SR   +L +F D+  S++   ++  S  L   + + A+EQ   IH +
Sbjct: 175 QIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHAN 234

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
            + +G   +V+V + L++ Y K G +  A + F E +     + W +M++GY+Q G    
Sbjct: 235 TIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVE-MPTRTPVTWTSMISGYSQHGRSQD 293

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            ++LF  + + G  P+E +F+++L+A   AGL  E+E++ + M+  Y +EP ++HY C++
Sbjct: 294 AIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMV 353

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
               R GRL+DA        FEP+ A+W +L++    HG  ++A     RL+++ P    
Sbjct: 354 DMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIE 413

Query: 407 AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
            YV++ N+    GRW +VA VRK+ K   V     RSWI ++ KV+ F A D  H +  +
Sbjct: 414 TYVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATE 473

Query: 467 IYTKLAELMEECERLGYVPVWD--EMLHNV--GDREKREA-----LWYHSEKLALAFGLV 517
           +Y  L  L+E+ + +GY P  +  E+L +   GD +K  A     + +HSE+LA+A GL+
Sbjct: 474 LYQLLENLLEKAKAVGYEPYQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERLAVALGLL 533

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
              P G T+R+ KN+ +CRDCH S KY S +  REIVVRD  R H+F +G C+CGD 
Sbjct: 534 E-TPPGATVRVTKNITMCRDCHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSCGDF 589


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 191/597 (31%), Positives = 313/597 (52%), Gaps = 43/597 (7%)

Query: 3   LDLNQQPQPQNTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS 61
           +DL QQ            VH  ++K  +    S+ N+L   Y KS  L   LR F   P 
Sbjct: 193 IDLGQQ------------VHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPD 240

Query: 62  PNIVSWTALISAHSNSP----LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
            N+++WT +IS+ +       L L++FL ML       +PN+ TL S+   C +     L
Sbjct: 241 KNVITWTTMISSCAEDENYLDLGLSLFLDMLEG---GVMPNEFTLTSVMSLCGARLDMSL 297

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G  + +   K+         ++ ++ Y R    D A ++F+E+    ++ + AMI G+A
Sbjct: 298 -GKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYA 356

Query: 178 Q-----------NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
           Q            SR   +L +F D+  S++   ++  S  L   + + A+EQ   IH +
Sbjct: 357 QIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHAN 416

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
            + +G   +V+V + L++ Y K G +  A + F E +     + W +M++GY+Q G    
Sbjct: 417 TIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVE-MPTRTPVTWTSMISGYSQHGRSQD 475

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            ++LF  + + G  P+E +F+++L+A   AGL  E+E++ + M+  Y +EP ++HY C++
Sbjct: 476 AIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMV 535

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
               R GRL+DA        FEP+ A+W +L++    HG  ++A     RL+++ P    
Sbjct: 536 DMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIE 595

Query: 407 AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
            YV++ N+    GRW +VA VRK+ K   V     RSWI ++ KV+ F A D  H +  +
Sbjct: 596 TYVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATE 655

Query: 467 IYTKLAELMEECERLGYVPVWD--EMLHNV--GDREKREA-----LWYHSEKLALAFGLV 517
           +Y  L  L+E+ + +GY P  +  E+L +   GD +K  A     + +HSE+LA+A GL+
Sbjct: 656 LYQLLENLLEKAKAVGYEPYQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERLAVALGLL 715

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
              P G T+R+ KN+ +CRDCH S KY S +  REIVVRD  R H+F +G C+CGD 
Sbjct: 716 E-TPPGATVRVTKNITMCRDCHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSCGDF 771



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 180/396 (45%), Gaps = 23/396 (5%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           R +H   +K+ + AD  +  +L+  Y +      + RLF+ +P  N+V+WTALI+ H   
Sbjct: 96  RALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLN 155

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           S   L+L +F+ ML    L   P+  TL  +   C S +     G  +H  S+K      
Sbjct: 156 SEPALALEVFVEMLE---LGRYPSHYTLGGMLSAC-SAARRIDLGQQVHGYSIKYGADTI 211

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMR 193
              G++L   Y +    ++  + F    +++V+ +  MI   A++   +D  LS+F DM 
Sbjct: 212 TSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDML 271

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              V    + ++  +        M   + +       G + N+ V    +  Y + G   
Sbjct: 272 EGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETD 331

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQS-----------TVLELFHLLEMRGFAPD 302
           +A R+F+E +   + I WNAM++GYAQ  D +             L+LF  L      PD
Sbjct: 332 EAMRLFEE-MDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPD 390

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
            ++F ++L+ +C+A +A E  + I    ++      +   + L++   + G +E A +  
Sbjct: 391 LFTFSSILS-VCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAF 449

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           + MP       W +++S  + HG++  A ++ + ++
Sbjct: 450 VEMPTR-TPVTWTSMISGYSQHGRSQDAIQLFEDMV 484



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 7/187 (3%)

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V S MY     L    E   +   R +HGH V +G   ++ V T L++ Y +     DAR
Sbjct: 74  VQSAMYV--PLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDAR 131

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCN 315
           R+FD  +   N + W A++ G+    + +  LE+F  +LE+ G  P  Y+   +L+A C+
Sbjct: 132 RLFD-GMPDKNVVTWTALITGHTLNSEPALALEVFVEMLEL-GRYPSHYTLGGMLSA-CS 188

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           A    +  + +    ++Y  +        L     ++G LE   R     P + +   W 
Sbjct: 189 AARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTP-DKNVITWT 247

Query: 376 ALLSFSA 382
            ++S  A
Sbjct: 248 TMISSCA 254


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 170/475 (35%), Positives = 268/475 (56%), Gaps = 3/475 (0%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T  S+   C  +    L GL +H+  LK  L    F GS LV  + +     +A+KVFD 
Sbjct: 229 TYVSVMGLCGQIRDLGL-GLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDG 287

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           ++ R+VV + +++  + QN    ++L++ + M      S  +  +  L A A +AA+   
Sbjct: 288 LQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG 347

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
            ++H      G+   VIVG  LI+ Y K G +  +  VF + +   + I WNAM+ GY+Q
Sbjct: 348 DLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFD-MRNRDIITWNAMICGYSQ 406

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G     L LF  +   G  P+  +F+ VL+A  +  L  E   ++ ++   +K+EPGLE
Sbjct: 407 HGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLE 466

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           HYTC+++ + RAG LE+AE        + D   WR LL+   IH   ++ +K+ + ++ +
Sbjct: 467 HYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQM 526

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
           +P D   Y +++N+ +    WD V  +RK+M++R V+KE G SWIE++  VHVF +    
Sbjct: 527 DPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSN 586

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGA 520
           H     IY K+  L+E  ++LGYVP  + +LH+V D +K   L YHSEKLA+A+GL+   
Sbjct: 587 HPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMK-I 645

Query: 521 PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           P    +R++KNLRIC DCH + K IS+V  R I+VRD +R+H F +G+CTC D W
Sbjct: 646 PSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 157/367 (42%), Gaps = 25/367 (6%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N+LI  Y K + L  +  LF+ +   ++VS+  L+  + +S   L +        +  + 
Sbjct: 59  NSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQ 118

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN+    ++   CA     F  G+  H    K  L    F  S+LVH YS+    D A +
Sbjct: 119 PNEYVFTTVLSACAHSGRVFE-GMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQ 177

Query: 157 VFDEIR-----ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV---GSTMYCVSGAL 208
           V +        + D  CY +++    ++ RL +++ V   M    V     T   V G  
Sbjct: 178 VLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLC 237

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
               +L    Q   +H   +  GL  +V VG+ L+D +GK G V  AR+VFD  L   N 
Sbjct: 238 GQIRDLGLGLQ---VHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFD-GLQNRNV 293

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES-----E 323
           + W ++M  Y Q G+    L L   ++  G   +E++F  +L A   AG+A         
Sbjct: 294 VVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAF--AGMAALRHGDLLH 351

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
             +E++ ++ ++  G      LI+   + G ++ +  +   M    D   W A++   + 
Sbjct: 352 ARVEKLGIKNRVIVG----NALINMYSKCGCIDSSYDVFFDMR-NRDIITWNAMICGYSQ 406

Query: 384 HGKADMA 390
           HG    A
Sbjct: 407 HGLGKQA 413



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 20  IVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           ++HAR  K    +R I  N LI  YSK   +  S  +F  + + +I++W A+I  +S   
Sbjct: 349 LLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHG 408

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
           L     L      +    PN  T   +   CA L+
Sbjct: 409 LGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLA 443


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 195/573 (34%), Positives = 308/573 (53%), Gaps = 25/573 (4%)

Query: 21  VHARALKSS-QADRSIYNNLIT-----NYSKSNLLSYSLRLFNHIPSPNIVSW------- 67
           +HA A+KS  QA  +    L+T       +K   LSY+ ++F+ IP P  V W       
Sbjct: 50  LHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRG 109

Query: 68  ----TALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
               +A   A   +  +  +F+ ML        P+  T  SL K CA+ + A   G   H
Sbjct: 110 YARCSAAGGARPPAEEAARVFVRMLEE---GVAPDTYTFVSLLKACAA-ARAGEEGRQAH 165

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
            +++K+   +  +    L++ Y+       A+ +F  +    VV Y AMI    ++SR  
Sbjct: 166 GVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPG 225

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           ++L +F +M++  +  T   +   L A A L A+E  R IH +     LD  V V T LI
Sbjct: 226 EALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALI 285

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           D YGK G + DA  VF + +   +  AW+ M+  YA        + LF  ++ +G  PD+
Sbjct: 286 DMYGKCGSLEDAISVF-QGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDD 344

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            +FL VL A  ++GL  E  ++ + M+  + L PG++HY C+   + R+G+L+ A     
Sbjct: 345 VTFLGVLYACSHSGLVSEGLQYFDSMR-EFGLVPGIKHYGCVADLLARSGQLDRAYEFID 403

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            +P +P A +WR LLS     G AD+  ++ +R+++++      YVI +N+ +  GRW+E
Sbjct: 404 ELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEE 463

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
           +  VRK+M ++ V K  G S IEV  +VH F AGD  H ++ D    +  ++E+ +  GY
Sbjct: 464 MNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGY 523

Query: 484 VPVWDEMLH-NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           VP    + H  +G+ EK  +L YHSEKLA++FGL++ +P G TLR+VKNLR+C DCH   
Sbjct: 524 VPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSP-GTTLRVVKNLRVCPDCHSMA 582

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           K +S V  R I++RD+NR+H F +G C+CGD W
Sbjct: 583 KLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 136/328 (41%), Gaps = 32/328 (9%)

Query: 70  LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
           L+ A S SPL+        +HP L +LP   TL +L +              LH+ ++K 
Sbjct: 14  LLPAKSKSPLAAAPAAQ--QHPLLPYLPQCTTLRALAQ--------------LHAAAVKS 57

Query: 130 SLHDKPFCGSALVHFYS-----RFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSR-- 181
            L   P   + L+   +     +      A++VFD I    DVV Y  ++ G+A+ S   
Sbjct: 58  GLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAG 117

Query: 182 -----LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
                  ++  VF  M    V    Y     L+A A   A E+ R  HG AV  G   + 
Sbjct: 118 GARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHE 177

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            V   LI+ Y + G    AR +F   +     +++NAM+    +       L LF  ++ 
Sbjct: 178 YVLPTLINMYAECGDARAARTMFG-RVDGECVVSYNAMITAAVRSSRPGEALVLFREMQA 236

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
           +G      + ++VL+A    G A E  +WI     + +L+  ++  T LI   G+ G LE
Sbjct: 237 KGLKLTSVTLISVLSACALLG-ALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLE 295

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIH 384
           DA  +   M    D   W  ++   A H
Sbjct: 296 DAISVFQGMESR-DRQAWSVMIVAYANH 322


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/549 (33%), Positives = 303/549 (55%), Gaps = 15/549 (2%)

Query: 28  SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---SPLSLNIF 84
           SS  D   Y  +IT Y+    +  + ++F+ IP  ++VSW A+IS ++       +L +F
Sbjct: 139 SSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELF 198

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
             M++   +   P++ T+A++  TC    +  L G  +HS              +AL+  
Sbjct: 199 NEMMK---MDVKPDESTMATVLSTCTHSGNVEL-GRQIHSWIDNHGFGSNLKLVNALIDL 254

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           YS+    + A  +F+ ++ +DV+ +  +I G+A  +   ++L VF +M           +
Sbjct: 255 YSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTM 314

Query: 205 SGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
              L A A L A++  R IH +    + G+  N  + T LID Y K G +  A +VFD  
Sbjct: 315 LSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFD-- 372

Query: 263 LSVLNSI--AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
            ++LN    + NAM+ G+A  G      +L   ++  G  PD+ +F+ +L+A  +AGL+ 
Sbjct: 373 -TILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSD 431

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
              K  + M + Y++EP LEHY C+I  +GR+G  ++AE +  +M  EPD  +W +LL  
Sbjct: 432 LGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKA 491

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
             IH   ++   + ++L+ I P +  +YV+++N+ +   RWD+VA VR ++ D+ ++K  
Sbjct: 492 CKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVP 551

Query: 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKR 500
           G S IE+   VH FL GD+ H + ++IY  L E+       G+V    E+L  + +  K 
Sbjct: 552 GCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKE 611

Query: 501 EALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNR 560
            AL YHSEKLA+AFGL+S  P G  LRIVKNLR+CR+CHE+ K IS++ +REI+ RD +R
Sbjct: 612 GALSYHSEKLAIAFGLISTKP-GTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSR 670

Query: 561 YHRFLNGSC 569
           +H F +G C
Sbjct: 671 FHHFKDGMC 679



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 196/449 (43%), Gaps = 61/449 (13%)

Query: 41  TNYSKSNLLS------------YSLRLFNHIPSPNIVSWTALISAH--SNSPLS-LNIFL 85
           TNY+ S LL             Y++ +F  I  PN +SW  +I  H  S+ P+S LN+++
Sbjct: 8   TNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYV 67

Query: 86  SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY 145
            M+   +L   PN  T   LFK+CA  S A   G  +H+  LK  L       ++L+  Y
Sbjct: 68  YMI---SLGLSPNSYTFPFLFKSCAK-SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMY 123

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIV------------------------------- 174
           ++    ++A KVFD    RDVV Y AMI                                
Sbjct: 124 AQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMIS 183

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           G+A+  R  ++L +F +M   DV      ++  L        +E  R IH      G   
Sbjct: 184 GYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGS 243

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           N+ +   LID Y K G +  A  +F E L   + I+WN ++ GYA        L +F  +
Sbjct: 244 NLKLVNALIDLYSKCGEMERAHGLF-EGLQYKDVISWNTLIGGYAYINHHKEALLVFQEM 302

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH---YTCLISAMGR 351
              G  P++ + L++L A  + G A +  +WI  + +  KL+  + +    T LI    +
Sbjct: 303 LKLGETPNDVTMLSILPACAHLG-AIDIGRWI-HVYIDKKLKGIITNTSLQTSLIDMYAK 360

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYV 409
            G +E A ++   +  +  ++    +  F A+HG+AD A  +  R+    I P DD  +V
Sbjct: 361 CGNIEAANQVFDTILNKSLSSCNAMIFGF-AMHGRADAAFDLLSRMKKDGIEP-DDITFV 418

Query: 410 IVANVLSGVGRWDEVAEVRKVMK-DRRVR 437
            + +  S  G  D   ++ K M  D R+ 
Sbjct: 419 GLLSACSHAGLSDLGRKIFKSMTLDYRIE 447



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 41/288 (14%)

Query: 127 LKLSLHDKPFCGSALVHF---YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
           +K+ LH+  +  S L+ F      F     A  VF  I+E + + +  MI G A +S  +
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
            +L+++  M S  +    Y      ++ A+  A ++ + IH   +  GL  ++ V T LI
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 244 DGYGKAGIVSDARRVFD------------------------------ENLSVLNSIAWNA 273
             Y + GIV DA +VFD                              + + + + ++WNA
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNA 180

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMK 330
           M++GYA+ G     LELF+ +      PDE +   VL+   ++G   L  +   WI+   
Sbjct: 181 MISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWID--- 237

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             +     L+    LI    + G +E A  +   + ++ D   W  L+
Sbjct: 238 -NHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYK-DVISWNTLI 283


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 191/565 (33%), Positives = 309/565 (54%), Gaps = 23/565 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLF--NHIPSPNIVSWTALISAHS-N 76
           +H   +K+  + +  +  +LI+ Y K + ++ + ++F  NH      V + ALI+ +S N
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137

Query: 77  SPLSLNIFL-SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           S  S  + L   +R   +S   N  T+  L   CA   H   FG SLH+ S++  L    
Sbjct: 138 SRFSDAVLLFRQMRKEGVSV--NAVTMLGLIPVCAGPIH-LGFGTSLHACSVRFGLDGDL 194

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             G+ L+  Y R  S D A+K+FD + E+ ++ + AMI G+AQN      L ++  M  +
Sbjct: 195 SVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFT 254

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +      + G L + A L A    R +     +SG   N  +   LI+ Y + G +  A
Sbjct: 255 GIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKA 314

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R +FD  ++  N I+W A++AGY   G     ++LF  +      PD  +F++VL+A  +
Sbjct: 315 RAIFD-GMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSH 373

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  +   +   M+  Y L+PG EHY+C++  +GRAGRLE+A ++  +M  EPD AVW 
Sbjct: 374 AGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWG 433

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ALL    IH   ++A    +++I+  P +   YV+++N+ S  G  + +  VR +M++R+
Sbjct: 434 ALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERK 493

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           ++KE G S++E +G++H+FLAGDR H + ++IY  L  L +  +R G          N  
Sbjct: 494 LKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGG--------SNDN 545

Query: 496 DREKRE-----ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           D+E R       +  HSEKLA+AFGL++  P G  + ++KNLR+C DCH   K +S +V+
Sbjct: 546 DQESRNEELITGMGVHSEKLAIAFGLINTEP-GTEITVIKNLRVCGDCHLFLKLVSEIVD 604

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           R++VVRD  R+H F NG C+C D W
Sbjct: 605 RQLVVRDATRFHHFKNGVCSCKDYW 629



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 169/344 (49%), Gaps = 12/344 (3%)

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +LN++  ML        PN  T    FK+CASLS   L G  LH   +K     +PF  +
Sbjct: 40  ALNLYCQMLASGDS---PNAFTFPFAFKSCASLSLP-LAGSQLHGHVIKTGCEPEPFVQT 95

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERD--VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           +L+  Y +  +  +A+KVFDE        VCY A+I G++ NSR  D++ +F  MR   V
Sbjct: 96  SLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGV 155

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 + G +   A    +     +H  +V  GLD ++ VG  L+  Y + G V  AR+
Sbjct: 156 SVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARK 215

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD  +     I WNAM++GYAQ G    VL+L+  +E  G  PD  + + VL++  + G
Sbjct: 216 LFD-GMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLG 274

Query: 318 LAGESEKWIERMKVR-YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
                 +  +R+++  +   P L++   LI+   R G L  A  I   M  E +   W A
Sbjct: 275 AHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDGMT-EKNVISWTA 331

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPY-DDSAYVIVANVLSGVG 419
           +++   +HG+ ++A ++   +I  +   D +A+V V +  S  G
Sbjct: 332 IIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAG 375



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 15/270 (5%)

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
            A+     ++L+++  M +S      +    A ++ A L+       +HGH + +G +  
Sbjct: 31  LARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPE 90

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLN-SIAWNAMMAGYAQQGDQSTVLELFHLL 294
             V T LI  Y K   ++ AR+VFDEN    N ++ +NA++AGY+     S  + LF  +
Sbjct: 91  PFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQM 150

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
              G + +  + L  L  +C   +       +    VR+ L+  L    CL++   R G 
Sbjct: 151 RKEGVSVNAVTMLG-LIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGS 209

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA----DMASKMGKRLIDINPYDDSAYVI 410
           ++ A ++   MP E     W A++S  A +G A    D+  KM    I  +P      V 
Sbjct: 210 VDFARKLFDGMP-EKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDP------VT 262

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
           +  VLS        A  R+V  ++R+   G
Sbjct: 263 LVGVLSSCAHLGAHAAGREV--EQRIELSG 290


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 311/572 (54%), Gaps = 24/572 (4%)

Query: 21  VHARALKSS---QADRSIYNNLITNYSKSNL-----LSYSLRLFNHIPSPNIVSW-TALI 71
           +HA A+K+    QA  +    L+T  ++        L+Y+ ++F+ IP P  V W   L+
Sbjct: 47  LHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLL 106

Query: 72  SAHSN-------SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
             ++        +  +  +F+ M+        P+  T  SL K CAS + A   G   H 
Sbjct: 107 RGYARGGWGGGCAEEAARVFVRMMEE---GVAPDTYTFVSLLKACAS-ARAGEEGRQAHG 162

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
           +++K    +  +    L++ Y+       A+ +FD +    VV Y AMI    ++S   +
Sbjct: 163 VAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGE 222

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L +F +M++  +  T   +   L A A L A+E  R IH +     LD  V V T LID
Sbjct: 223 ALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALID 282

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G + DA  VF +++   +  AW+ MM  YA  G     + +F  ++ +G  PD+ 
Sbjct: 283 MYAKCGSLEDAIGVF-QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDV 341

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +FL VL A  ++G+  E  ++ + M+  Y +  G++HY C+   + R+G+LE A +    
Sbjct: 342 TFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDE 400

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           +P +P A +WR LLS  A HG  DM  ++ +R+++++      YVI +N+ +  GRW+E+
Sbjct: 401 LPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEM 460

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
             VRK+M ++ V K  G S IE+   VH F AGD  H  +++    + E++E+ + +GYV
Sbjct: 461 NMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYV 520

Query: 485 PVWDEMLH-NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           P    + H  +G+ EK  +L YHSEKLA++FGL++ AP G TLRIVKNLR+C DCH   K
Sbjct: 521 PNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAP-GTTLRIVKNLRVCPDCHSMAK 579

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            +S V  R I++RD+NR+H F +G C+CGD W
Sbjct: 580 LVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 191/556 (34%), Positives = 307/556 (55%), Gaps = 24/556 (4%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNL--LSYSLRLFNHIPSPNIVSWTALISAH--- 74
           +HA+ L++    D    + LIT  + S    L Y+ ++F+ IP PN+ +W  LI A+   
Sbjct: 54  IHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASS 113

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           SN   SL IFL ML H +  F P++ T   L K  + L   F  G + H + +K+ L   
Sbjct: 114 SNPHQSLLIFLRML-HQSPDF-PDKFTFPFLIKAASELEELFT-GKAFHGMVIKVLLGSD 170

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  ++L+HFY++        +VF     RDVV + +MI  F Q     ++L +F +M +
Sbjct: 171 VFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMET 230

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            +V      + G L A A+ +  E  R +H +   + +  ++ +   ++D Y K G V D
Sbjct: 231 QNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVED 290

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV------------LELFHLLEMRGFAPD 302
           A+R+FD+ +   + ++W  M+ GYA+ G+                + LF  ++     P+
Sbjct: 291 AKRLFDK-MPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPN 349

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
             +F  +L A  + GL  E   +  +M++ Y + PG++HY C++  +GRAG LE+A  + 
Sbjct: 350 AVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELI 409

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             MP  P A+VW ALL    IH    +A +   +LI++ P +  AYV+++N+ +  G+WD
Sbjct: 410 EKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWD 469

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
            V+ +RK+M+D  ++KE G S IEV G VH FL GD  H   + IY KL E++   E +G
Sbjct: 470 RVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIG 529

Query: 483 YVPVWDEMLHNVGDRE-KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           YVP    +L  V + + K +AL+ HSEKLA+AFGL+S   + + +RIVKNLR+C DCH  
Sbjct: 530 YVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTG-QSQPIRIVKNLRVCGDCHSV 588

Query: 542 FKYISRVVEREIVVRD 557
            K +S++ +REI++RD
Sbjct: 589 AKLVSKLYDREILLRD 604


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 297/554 (53%), Gaps = 11/554 (1%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
           KSS  D   Y  LIT Y+    +  + ++F+ IP  ++VSW A IS ++   N   +L +
Sbjct: 163 KSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALEL 222

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M++    +  P++ T+ ++   CA  S +   G  +HS              +AL+ 
Sbjct: 223 FKKMMK---TNVRPDESTMVTVLSACAQ-SGSIELGRQVHSWINDHGFGXNLKIVNALID 278

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            YS+    + A  +F  +  +DV+ +  +I G+   +   ++L +F DM  S        
Sbjct: 279 LYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVT 338

Query: 204 VSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           +   L A A L A++  R IH +    + G+     + T LID Y K G +  A++VFD 
Sbjct: 339 MLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDS 398

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            L+   S +WNAM+ G+A  G  +   ++F  +   G  PD+ +F+ +L+A  ++G+   
Sbjct: 399 MLNRSLS-SWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 457

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
                  M   YKL P LEHY C+I   G +G  ++AE++   M  EPD  +W +LL   
Sbjct: 458 GRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKAC 517

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
            +HG  ++     + LI I P +  +YV+++N+ +   RW+EVA+ R ++ D+ ++K  G
Sbjct: 518 KMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPG 577

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
            S IE+   VH F+ GD+ H R  +IY  L E+    E  G+VP   E+L  + +  K  
Sbjct: 578 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEG 637

Query: 502 ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
           AL +HSEKLA+AFGL+S  P G  L IVKNLR+CR+CHE+ K IS++ +REI+ RD  R+
Sbjct: 638 ALRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRF 696

Query: 562 HRFLNGSCTCGDLW 575
           H F +G C+C D W
Sbjct: 697 HHFRDGECSCNDYW 710



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 132/325 (40%), Gaps = 55/325 (16%)

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH---FYS 146
           HP+LS L   +TL SL                +H+  +K  LH+  +  S L+       
Sbjct: 3   HPSLSLLHXCKTLQSL--------------RIIHAQMIKTGLHNTNYALSKLLEXCVLSP 48

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
            F     A  VFD I+E  ++ +  M  G A +S  V +L ++  M S  +    Y    
Sbjct: 49  HFDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPF 108

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD------ 260
            L++ A+  A ++ + +HG  +  G D ++ + T LI  Y + G + DA++V D      
Sbjct: 109 LLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRD 168

Query: 261 ------------------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
                                   + + V + ++WNA ++GYA+ G+    LELF  +  
Sbjct: 169 VVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMK 228

Query: 297 RGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
               PDE + + VL+A   +G   L  +   WI      +     L+    LI    + G
Sbjct: 229 TNVRPDESTMVTVLSACAQSGSIELGRQVHSWIN----DHGFGXNLKIVNALIDLYSKCG 284

Query: 354 RLEDAERIAMAMPFEPDAAVWRALL 378
            LE A  +   +    D   W  L+
Sbjct: 285 ELETACGLFQGLS-NKDVISWNTLI 308



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 118/294 (40%), Gaps = 48/294 (16%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA----- 270
            ++  R+IH   + +GL       + L++      ++S         +SV ++I      
Sbjct: 14  TLQSLRIIHAQMIKTGLHNTNYALSKLLE----XCVLSPHFDGLPYAISVFDTIQEPXLL 69

Query: 271 -WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            WN M  G+A   D  + L+L+  +   G  P+ Y+F  +L + C    A +  + +   
Sbjct: 70  IWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKS-CAKSXAFKEGQQLHGQ 128

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
            +++  +  L  +T LIS   + GRLEDA+++        D   + AL++  A  G  + 
Sbjct: 129 VLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHR-DVVSYTALITGYASRGXIES 187

Query: 390 ASKMGKRLIDINPYDDSAYVIVANV-LSG---VGRWDEVAEVRKVMKDRRVRK------- 438
           A KM     D  P  D   V+  N  +SG    G + E  E+ K M    VR        
Sbjct: 188 AHKM----FDEIPVKD---VVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVT 240

Query: 439 -----------EGGR---SWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC 478
                      E GR   SWI   G    F    ++     D+Y+K  EL   C
Sbjct: 241 VLSACAQSGSIELGRQVHSWINDHG----FGXNLKIVNALIDLYSKCGELETAC 290


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 260/456 (57%), Gaps = 4/456 (0%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H+  +K +       G+AL+  Y +    + A KVF  I ++D+V + AM+ G+AQ   
Sbjct: 19  VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 78

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              ++ +F ++    +    +  S  L   AA  A+M Q +  HG A+ S LD ++ V +
Sbjct: 79  TEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSS 138

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            L+  Y K G +  A  VF       + ++WN+M++GYAQ G     L++F  ++ R   
Sbjct: 139 ALLTMYAKKGNIESAEEVFKRQREK-DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 197

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
            D  +F+ V  A  +AGL  E EK+ + M    K+ P  EH +C++    RAG+LE A +
Sbjct: 198 MDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 257

Query: 361 IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
           +   MP    + +WR +L+   +H K ++     +++I + P D +AYV+++N+ +  G 
Sbjct: 258 VIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGD 317

Query: 421 WDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECER 480
           W E A+VRK+M +R V+KE G SWIEVK K + FLAGDR H   + IY KL +L    + 
Sbjct: 318 WQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKD 377

Query: 481 LGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHE 540
           LGY P    +L ++ D  K   L  HSE+LA+AFGL++  P+G  L I+KNLR+C DCH 
Sbjct: 378 LGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIA-TPKGSPLLIIKNLRVCGDCHL 436

Query: 541 SFKYISRVVEREIVVRDVNRYHRF-LNGSCTCGDLW 575
             K I+++ EREIVVRD NR+H F  +G C+CGD W
Sbjct: 437 VIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 156/338 (46%), Gaps = 32/338 (9%)

Query: 18  PRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           P  VHA+ +K++ +   ++   L+  Y K   +  + ++F+ I   +IV+W+A+++ ++ 
Sbjct: 16  PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQ 75

Query: 77  S---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +     ++ +F  + +       PN+ T +S+   CA+ + +   G   H  ++K  L  
Sbjct: 76  TGETEAAIKMFGELTKG---GIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDS 132

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                SAL+  Y++  + ++A++VF   RE+D+V + +MI G+AQ+ + + +L VF +M+
Sbjct: 133 SLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMK 192

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG------TGLIDGYG 247
              V        G   A      +E+     G      + R+  +       + ++D Y 
Sbjct: 193 KRKVKMDGVTFIGVFAACTHAGLVEE-----GEKYFDIMVRDCKIAPTKEHNSCMVDLYS 247

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           +AG +  A +V +   +   S  W  ++A  A +  + T L      ++    P++ +  
Sbjct: 248 RAGQLEKAMKVIENMPNPAGSTIWRTILA--ACRVHKKTELGRLAAEKIIAMKPEDSAAY 305

Query: 308 AVLTALCNAGLAGESEKWIERMKVR-------YKLEPG 338
            +L+      +  ES  W ER KVR        K EPG
Sbjct: 306 VLLS-----NMYAESGDWQERAKVRKLMNERNVKKEPG 338


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 158/423 (37%), Positives = 258/423 (60%), Gaps = 2/423 (0%)

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A+K+FDE+ ERD + + +M+ G+    R  ++L +F  M+  +     + +S  L A +
Sbjct: 246 DARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACS 305

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
            + A++Q R +H +   + +  + ++GT L+D Y K G +     VF+E +       WN
Sbjct: 306 NIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEE-MKEREIFTWN 364

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           AM+ G A  G     LELF  L+     P+  + + VLTA  +AG   +  +  + M+  
Sbjct: 365 AMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREF 424

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y ++P LEHY C++  +GR+G   +AE +  +MP +P+AAVW ALL    IHG  D+A +
Sbjct: 425 YGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAER 484

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
           +GK L+++ P +   YV+++N+ + VGR+D+V+++RK+MK+R ++   G S +++ G VH
Sbjct: 485 VGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVH 544

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
            F  GD  H + ++IY KL  + E  +  G+ P   ++L ++ + EK  A+ YHSEKLA+
Sbjct: 545 EFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAI 604

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AFGL++  P GK + IVKNLR+C DCH + K IS++ +REI+VRD  RYH F NG+C+C 
Sbjct: 605 AFGLINTLP-GKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCK 663

Query: 573 DLW 575
           D W
Sbjct: 664 DFW 666



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 168/381 (44%), Gaps = 50/381 (13%)

Query: 21  VHARALKSSQ-ADRSIYNNLITNYSKSNL--LSYSLRLFNHIPSPNIVSWTALISA-HSN 76
           +HA  L+S    D  +   L+  Y+  +     ++L++F+ IP+PN+  W  +I     N
Sbjct: 52  LHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLEN 111

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + L   I+        +   PN+ T  +LFK C S++ A   G  +H   +K  +     
Sbjct: 112 NKLFKAIYF--YGRMVIDARPNKFTYPTLFKAC-SVAQAVQEGRQIHGHVVKHGIGSDVH 168

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             SA +  Y+ F   ++A+K+F    E DVVC+  MI G+ +   L  +  +FA M   +
Sbjct: 169 IKSAGIQMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKN 227

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +GS                                   NV     +I+G  K G + DAR
Sbjct: 228 IGSW----------------------------------NV-----MINGLAKGGNLGDAR 248

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           ++FDE +S  + I+W++M+ GY   G     LE+F  ++     P  +   +VL A  N 
Sbjct: 249 KLFDE-MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNI 307

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G A +  +W+     R  ++      T L+    + GRL+    +   M  E +   W A
Sbjct: 308 G-AIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMK-EREIFTWNA 365

Query: 377 LLSFSAIHGKADMASKMGKRL 397
           ++   AIHG+A+ A ++  +L
Sbjct: 366 MIGGLAIHGRAEDALELFSKL 386



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPT 92
           +N +I   +K   L  + +LF+ +   + +SW++++  + ++     +L IF  M R  T
Sbjct: 231 WNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREET 290

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
               P +  L+S+   C+++  A   G  +H+   + S+      G+AL+  Y++    D
Sbjct: 291 R---PGRFILSSVLAACSNIG-AIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLD 346

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
              +VF+E++ER++  + AMI G A + R  D+L +F+ ++   +      + G L A A
Sbjct: 347 MGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACA 406

Query: 213 ELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
               +++  R+        G+D  +     ++D  G++G+ S+A  + +      N+  W
Sbjct: 407 HAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVW 466

Query: 272 NAMMAGYAQQGD 283
            A++      G+
Sbjct: 467 GALLGACRIHGN 478


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 190/565 (33%), Positives = 309/565 (54%), Gaps = 19/565 (3%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H   LK     D S+ N L+  Y +   +    + F+ +   + VSW +LI A ++S  
Sbjct: 512  LHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEP 571

Query: 80   SL----NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            S+      FL M+R     + PN+ T  ++    +SLS   L G  +H+L LK ++    
Sbjct: 572  SMLEAVESFLVMMR---AGWDPNRVTFITILAAVSSLSLHEL-GKQIHALVLKRNVAADT 627

Query: 136  FCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +AL+  Y +       + +F  + +R D V + +MI G+  N  L  ++ +   M  
Sbjct: 628  AIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQ 687

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                   +  +  L A A +A +E+   +HG +V + L+ ++++G+ L+D Y K G +  
Sbjct: 688  KGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDY 747

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            A R F E +   N  +WN+M++GYA+ G  +  L+LF  ++++G  PD  +F+ VL+A  
Sbjct: 748  ASRFF-EMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACS 806

Query: 315  NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            +AGL  E     + M   Y L P +EH++C++  +GR G L   E     MP +P+  +W
Sbjct: 807  HAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIW 866

Query: 375  RALLSFSAIHGKADMASKMGKR----LIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
            R +L         + A  +G+R    L+++ P +   Y++++N+ +  G+WD+VA+ R  
Sbjct: 867  RTVLGACCRANGRNTA--LGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVA 924

Query: 431  MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
            M+   V+KE G SW+ +K  VHVF+AGD+ H   + IY KL EL  +    GY+P     
Sbjct: 925  MRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFA 984

Query: 491  LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
            L+++    K E L YHSEK+A+AF L    P    +RI+KNLR+C DCH +FKYIS++VE
Sbjct: 985  LYDLEGESKEELLSYHSEKIAVAFVLTR--PSKMPIRILKNLRVCGDCHSAFKYISQIVE 1042

Query: 551  REIVVRDVNRYHRFLNGSCTCGDLW 575
            R+IV+RD NR+H F NG C+CGD W
Sbjct: 1043 RQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 147/325 (45%), Gaps = 25/325 (7%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           L Q+ +    S D   +H +  K+    D  + N LI  Y++   L    ++F+ +P  N
Sbjct: 79  LAQRYRYSCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRN 138

Query: 64  IVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS-HAFLFG 119
           +VSW+ LIS ++ + +   +  +F  M+      F+PN     S+ + C     +   FG
Sbjct: 139 LVSWSCLISGYTRNRMPNEACELFRKMVSD---GFMPNHYAFGSVIRACQECGEYGLKFG 195

Query: 120 LSLHSLSLKLSLHDKPFCGSALVHFYSR-FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           + +H L  K    +     + L+  Y       D A++ FD I  R++V   +MI  + Q
Sbjct: 196 MQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQ 255

Query: 179 NSRLVDSLSVFADMRSSDVGSTM----YCVSGALRAAAELA-----AMEQCRVIHGHAVV 229
               V +  +F+ M+   +G  +    Y     + A   LA      +EQ   +      
Sbjct: 256 RGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQ---LLTRVEK 312

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
           SG   ++ VG+ L+ G+ KAG +  A+ +F + +S  N ++ N ++ G  +Q      +E
Sbjct: 313 SGFLHDLYVGSALVSGFAKAGSIGYAKNIF-QKMSYRNVVSLNGLIIGLVRQKRGEEAVE 371

Query: 290 LFHLLEMR-GFAPDEYSFLAVLTAL 313
           LF  +EM+     +  S++ +LTA 
Sbjct: 372 LF--MEMKDSVELNPNSYMIILTAF 394



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 163/354 (46%), Gaps = 10/354 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           D  + + L++ ++K+  + Y+  +F  +   N+VS   LI           ++ +F+ M 
Sbjct: 318 DLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM- 376

Query: 89  RHPTLSFLPNQ-RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYS 146
              ++   PN    + + F     L +    G  +H+  ++  L +     G+ L++ Y+
Sbjct: 377 -KDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYA 435

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +  + ++A  VF  +  +D V + +MI G  QN + ++++  F +MR +++  + + +  
Sbjct: 436 KCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMIS 495

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           AL + A L  +     +H   +  GLD +V V   L+  YG+ G V + ++ F   L   
Sbjct: 496 ALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDY- 554

Query: 267 NSIAWNAMMAGYA-QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
           + ++WN+++   A  +      +E F ++   G+ P+  +F+ +L A+ +  L  E  K 
Sbjct: 555 DHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLH-ELGKQ 613

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           I  + ++  +         L++  G+ G +   E I   M    D   W +++S
Sbjct: 614 IHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMIS 667



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 171/420 (40%), Gaps = 18/420 (4%)

Query: 21  VHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           VHA  ++S    A  +I N LI  Y+K   ++ +  +F  + + + V+W ++I+    + 
Sbjct: 410 VHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNK 469

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
             L    +          P+  T+ S   +CASL    + G  LH   LKL L       
Sbjct: 470 QFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISV-GEQLHCEGLKLGLDLDVSVS 528

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS-RLVDSLSVFADMRSSDV 197
           +AL+  Y         +K F  + + D V + ++I   A +   +++++  F  M  +  
Sbjct: 529 NALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGW 588

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                     L A + L+  E  + IH   +   +  +  +   L+  YGK G +     
Sbjct: 589 DPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCEN 648

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +F       + ++WN+M++GY         +++   +  +G   D ++F  VL+A C   
Sbjct: 649 IFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSA-CATV 707

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              E    +    VR  LE  +   + L+    + GR++ A R    MP   +   W ++
Sbjct: 708 ATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPAR-NLYSWNSM 766

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS----------GVGRWDEVAEV 427
           +S  A HG    +  +  ++    P  D  +V    VLS          G   +D ++E+
Sbjct: 767 ISGYARHGHGTKSLDLFAQMKLQGPLPD--HVTFVGVLSACSHAGLVNEGFSHFDSMSEI 824



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 15/257 (5%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           LH    K    +  F  + L++ Y+R     + +KVFDE+  R++V +  +I G+ +N  
Sbjct: 95  LHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRM 154

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA--AMEQCRVIHGHAVVSGLDRNVIVG 239
             ++  +F  M S       Y     +RA  E     ++    IHG    +    +V   
Sbjct: 155 PNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTAS 214

Query: 240 TGLIDGYGKA-GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR- 297
             LI  YG A G+V  ARR FD ++   N ++ N+M++ Y Q+GD  +  ++F  ++   
Sbjct: 215 NVLISMYGNALGMVDYARRAFD-SIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEV 273

Query: 298 ---GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH----YTCLISAMG 350
              G  P+EY+F ++++A C+  LA      +E++  R + + G  H     + L+S   
Sbjct: 274 MGDGLKPNEYTFGSLISATCS--LANSGLVLLEQLLTRVE-KSGFLHDLYVGSALVSGFA 330

Query: 351 RAGRLEDAERIAMAMPF 367
           +AG +  A+ I   M +
Sbjct: 331 KAGSIGYAKNIFQKMSY 347


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/553 (33%), Positives = 296/553 (53%), Gaps = 24/553 (4%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP---LSLNIFLS 86
           + D     N+I  Y +   L  +  LF+ +P  N+VSWT +I+ +  +    ++  +F  
Sbjct: 250 EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEV 309

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M     +S+      +   +  C  L  A         L   + +     C + ++ F  
Sbjct: 310 MPEKNEVSWT----AMLKGYTNCGRLDEA-------SELFNAMPIKSVVACNAMILCFGQ 358

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
               P  A++VFD++RE+D   + AMI  + +    +D+L +F  M+   +      +  
Sbjct: 359 NGEVP-KARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLIS 417

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L   A LA ++  R IH   V S  D +V V + L+  Y K G ++ A++VFD   +V 
Sbjct: 418 VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDR-FAVK 476

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + + WN+++ GYAQ G     L +FH +   G  PD+ +F+ VL+A    G   +  +  
Sbjct: 477 DVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIF 536

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             M+ +Y++E  +EHY C++  +GRAG+L +A  +   MP E DA +W ALL     H K
Sbjct: 537 NSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMK 596

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            D+A    K+L+ + P +   +++++N+ +  GRWD+VAE+R+ M+DRRV K  G SWI 
Sbjct: 597 LDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIV 656

Query: 447 VKGKVHVFLAGDRM----HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREA 502
           V+ KVH F  GD      H     I   L+ L+ E    GY P    +LH+V + EK ++
Sbjct: 657 VEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREA---GYYPDQSFVLHDVDEEEKVQS 713

Query: 503 LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562
           L YHSEKLA+A+GL+   P G  +R++KNLR+C DCH + K I++V  REI++RD NR+H
Sbjct: 714 LEYHSEKLAVAYGLLK-IPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFH 772

Query: 563 RFLNGSCTCGDLW 575
            F +GSC+C D W
Sbjct: 773 HFKDGSCSCRDYW 785



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 138/302 (45%), Gaps = 25/302 (8%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           ++L+  YSR    + A+ VFDE+R+++++ + +++ G+ QN R  ++ ++F  M   +  
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           S    VSG +        + + R +         +RNV+  T ++ GY K G++S+A  +
Sbjct: 162 SWNGLVSGYINN----GMINEAREVFDRMP----ERNVVSWTAMVRGYVKEGMISEAETL 213

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F + +   N ++W  M+ G  Q+G       LF ++  +    D  +   ++   C  G 
Sbjct: 214 FWQ-MPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTNMIGGYCQVGR 268

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E+    + M  R      +  +T +I+   +  +++ A ++   MP E +   W A+L
Sbjct: 269 LVEARMLFDEMPRR-----NVVSWTTMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAML 322

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
                 G+ D AS++       N     + V    ++   G+  EV + R+V    R + 
Sbjct: 323 KGYTNCGRLDEASEL------FNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKD 376

Query: 439 EG 440
           EG
Sbjct: 377 EG 378


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/553 (33%), Positives = 296/553 (53%), Gaps = 24/553 (4%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP---LSLNIFLS 86
           + D     N+I  Y +   L  +  LF+ +P  N+VSWT +I+ +  +    ++  +F  
Sbjct: 250 EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEV 309

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M     +S+      +   +  C  L  A         L   + +     C + ++ F  
Sbjct: 310 MPEKNEVSWT----AMLKGYTNCGRLDEA-------SELFNAMPIKSVVACNAMILCFGQ 358

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
               P  A++VFD++RE+D   + AMI  + +    +D+L +F  M+   +      +  
Sbjct: 359 NGEVP-KARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLIS 417

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L   A LA ++  R IH   V S  D +V V + L+  Y K G ++ A++VFD   +V 
Sbjct: 418 VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDR-FAVK 476

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + + WN+++ GYAQ G     L +FH +   G  PD+ +F+ VL+A    G   +  +  
Sbjct: 477 DVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIF 536

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             M+ +Y++E  +EHY C++  +GRAG+L +A  +   MP E DA +W ALL     H K
Sbjct: 537 NSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMK 596

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            D+A    K+L+ + P +   +++++N+ +  GRWD+VAE+R+ M+DRRV K  G SWI 
Sbjct: 597 LDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIV 656

Query: 447 VKGKVHVFLAGDRM----HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREA 502
           V+ KVH F  GD      H     I   L+ L+ E    GY P    +LH+V + EK ++
Sbjct: 657 VEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREA---GYYPDQSFVLHDVDEEEKVQS 713

Query: 503 LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562
           L YHSEKLA+A+GL+   P G  +R++KNLR+C DCH + K I++V  REI++RD NR+H
Sbjct: 714 LEYHSEKLAVAYGLLK-IPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFH 772

Query: 563 RFLNGSCTCGDLW 575
            F +GSC+C D W
Sbjct: 773 HFKDGSCSCRDYW 785



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 138/302 (45%), Gaps = 25/302 (8%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           ++L+  YSR    + A+ VFDE+R+++++ + +++ G+ QN R  ++ ++F  M   +  
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           S    VSG +        + + R +         +RNV+  T ++ GY K G++S+A  +
Sbjct: 162 SWNGLVSGYINN----GMINEAREVFDRMP----ERNVVSWTAMVRGYVKEGMISEAETL 213

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F + +   N ++W  M+ G  Q+G       LF ++  +    D  +   ++   C  G 
Sbjct: 214 FWQ-MPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTNMIGGYCQVGR 268

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E+    + M  R      +  +T +I+   +  +++ A ++   MP E +   W A+L
Sbjct: 269 LVEARMLFDEMPRR-----NVVSWTTMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAML 322

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
                 G+ D AS++       N     + V    ++   G+  EV + R+V    R + 
Sbjct: 323 KGYTNCGRLDEASEL------FNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKD 376

Query: 439 EG 440
           EG
Sbjct: 377 EG 378


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 176/529 (33%), Positives = 294/529 (55%), Gaps = 15/529 (2%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASL---FK 107
           +LF+ +P  ++VSW  +I+ ++ + +   +LN+   M +    +  P+  TL+S+   F 
Sbjct: 154 KLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKE---NLRPDSFTLSSILPIFT 210

Query: 108 TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167
             A+++     G  +H  +++       F GS+L+  Y++    + +   F  +  RD +
Sbjct: 211 EHANVTK----GKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAI 266

Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
            + ++I G  QN R    L  F  M    V       S  + A A L A+   + +H + 
Sbjct: 267 SWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYI 326

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQST 286
           +  G D N  + + L+D Y K G +  AR +F++  +   + ++W A++ G A  G    
Sbjct: 327 IRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALD 386

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            + LF  + + G  P   +F+AVLTA  +AGL  E  K+   M+  + + PGLEHY  + 
Sbjct: 387 AVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVA 446

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
             +GRAGRLE+A      M  EP  +VW  LL+    H   ++A K+  +++ ++P +  
Sbjct: 447 DLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMG 506

Query: 407 AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
           A+VI++N+ S   RW + A++R  M+   ++K    SWIEV  KVH FLAGD+ H   + 
Sbjct: 507 AHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDK 566

Query: 467 IYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTL 526
           I   L  L+E+ E+ GYV   +E+LH+V +  KR+ L  HSE+LA+AFG++S    G T+
Sbjct: 567 INEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIIS-TTSGTTI 625

Query: 527 RIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           R++KN+R+C DCH + K+++++V REI+VRD +R+H F NGSC+CGD W
Sbjct: 626 RVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 172/395 (43%), Gaps = 43/395 (10%)

Query: 61  SPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF--------LPNQRTLASLFKTCASL 112
           +P+ ++W  +I  +++  L        LRH   SF         P++    SL +     
Sbjct: 38  TPHSLAWICIIKCYASHGL--------LRHSLASFNLLRSFGISPDRHLFPSLLRASTLF 89

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR---SP------------------ 151
            H F    SLH+  ++L  H   +  +AL++ YS+F    SP                  
Sbjct: 90  KH-FNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVK 148

Query: 152 -DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            D+ +K+FD +  RDVV +  +I G AQN    ++L++  +M   ++    + +S  L  
Sbjct: 149 IDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPI 208

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
             E A + + + IHG+A+  G D++V +G+ LID Y K   V  +   F   LS  ++I+
Sbjct: 209 FTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAF-HLLSNRDAIS 267

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WN+++AG  Q G     L  F  +      P + SF +V+ A C    A    K +    
Sbjct: 268 WNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPA-CAHLTALNLGKQLHAYI 326

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF-EPDAAVWRALLSFSAIHGKA-D 388
           +R   +      + L+    + G ++ A  I   +   + D   W A++   A+HG A D
Sbjct: 327 IRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALD 386

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
             S   + L+D       A++ V    S  G  DE
Sbjct: 387 AVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDE 421



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 21/274 (7%)

Query: 16  TDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA- 73
           T  + +H  A++     D  I ++LI  Y+K   +  S+  F+ + + + +SW ++I+  
Sbjct: 216 TKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGC 275

Query: 74  --HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
             +      L  F  ML+       P Q + +S+   CA L+ A   G  LH+  ++L  
Sbjct: 276 VQNGRFDQGLGFFRRMLKEKV---KPMQVSFSSVIPACAHLT-ALNLGKQLHAYIIRLGF 331

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLVDSLSVF 189
            D  F  S+L+  Y++  +   A+ +F++I   +RD+V + A+I+G A +   +D++S+F
Sbjct: 332 DDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLF 391

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL------I 243
            +M    V          L A +    +++     G    + + R+  V  GL       
Sbjct: 392 EEMLVDGVKPCYVAFMAVLTACSHAGLVDE-----GWKYFNSMQRDFGVAPGLEHYAAVA 446

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
           D  G+AG + +A               W+ ++A 
Sbjct: 447 DLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAA 480


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 193/589 (32%), Positives = 304/589 (51%), Gaps = 39/589 (6%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNL-LSYSLRLFNHIPSPNIVSWTALIS--AHSNS 77
           +HA  LK++    S+  + + +    N   SY+  +F  + +  +  W   +   A  +S
Sbjct: 34  LHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDS 93

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P         LR   +S  P+  T + + K C+ L      G  +H    KL L    F 
Sbjct: 94  PADAISLFYRLREFDIS--PDHYTCSFVLKACSRLLDV-RNGKIVHGYVEKLGLQSNMFL 150

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV----------------------- 174
            + +VH Y+       A+KVFD++ +RDV+ +  MI                        
Sbjct: 151 QNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNV 210

Query: 175 --------GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
                   G+AQ  +  +++ +F +M  + +      V   L A A++  +   R IH  
Sbjct: 211 RSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDF 270

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
           +  SG ++N+ V   LID Y K G + DA R+FD N+     ++W+AM+AG A  G    
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFD-NMEERTVVSWSAMIAGLAAHGRAED 329

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            L LF+ +   G  P+  +F+ +L A  + G+  +  K+   M   Y + P +EHY C++
Sbjct: 330 ALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMV 389

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
               RAG L++A    M MP  P+  VW ALL    +H    +A +  + L  ++P +D 
Sbjct: 390 DLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDG 449

Query: 407 AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
            YV+++N+ +  GRW++VA VRK+M+DR V+K  G S I V+G V+ F+AGD  H +TE+
Sbjct: 450 YYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEE 509

Query: 467 IYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTL 526
           I+    +L++  +  GYVP    +L ++ + +K + L+ HSEKLA+ FGL+   P G  +
Sbjct: 510 IFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTP-GTVI 568

Query: 527 RIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           RI+KNLR+C DCH + K IS V  REIVVRD NR+H F NGSC+CGD W
Sbjct: 569 RIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617


>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 923

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 307/563 (54%), Gaps = 9/563 (1%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D R+VHA  L+ S   +  + N+LIT Y K N +  + R+F  +P+ ++VS   LI +++
Sbjct: 366 DGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYA 425

Query: 76  ---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
              +   ++ +F  M R        N  T+ ++  +  S +    +GL LH+ ++     
Sbjct: 426 VLEDGTKAMQVFFWMRRGEVK---LNYITIVNILGSFTSSNDLRNYGLPLHAYTIHAGFL 482

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              +  ++L+  Y++    +++  VF  I  R VV + AMI    Q+    +SL +F DM
Sbjct: 483 SDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVVSWNAMIAANVQHGHGEESLKLFMDM 542

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R    G    C++  + ++A LA++E+   +HG  +  GL  +  V    +D YGK G +
Sbjct: 543 RHDGNGLDHICLAECMSSSASLASLEEGMQLHGLGLKCGLGNDSHVVNAAMDMYGKCGKM 602

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +  ++  +  ++     WN +++GYA+ G      E F  +   G  PD  +F+ +L+A
Sbjct: 603 DEMLKMLPDP-AIRPQQCWNTLISGYARYGYFKEAEETFKHMISVGRTPDYVTFVTLLSA 661

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  +   +   M   + + PG++H  C++  +GR GR  +AE+    MP  P+  
Sbjct: 662 CSHAGLVDKGIDYYNSMSSVFGVSPGIKHCVCIVDILGRLGRFAEAEKFIEDMPVLPNDL 721

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +WR+LLS S  H   D+  K  KRL++++P+DDSAYV+++N+ +   RW +V  VR  MK
Sbjct: 722 IWRSLLSSSRTHKNLDIGRKAAKRLLELDPFDDSAYVLLSNLYATSARWSDVDRVRSHMK 781

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
              + K    SW++ K +V  F  GD  H+  + IY KL E++ +   +GYV      LH
Sbjct: 782 TINLNKIPACSWLKQKKEVSTFGIGDHSHKHADKIYMKLDEILLKLREVGYVADTSSALH 841

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +  + +K + LW HSEKLALA+GL++  P G T+RI KNLR+C DCH  FK +S V +RE
Sbjct: 842 DTDEEQKEQNLWNHSEKLALAYGLIT-VPEGCTVRIFKNLRVCADCHLVFKLVSMVFDRE 900

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IV+RD  R+H F  GSC+C D W
Sbjct: 901 IVLRDPYRFHHFKGGSCSCSDFW 923



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 167/378 (44%), Gaps = 30/378 (7%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           Q   S+ N+LI+       +  + +LF  +   + VSW AL+S +S+  L   S  +F  
Sbjct: 177 QRQVSVANSLISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSD 236

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M R   L    +  TL SL   CAS S    +G  +HSL L+  LH      +ALV+ YS
Sbjct: 237 MRRGGLLRH--DATTLCSLISVCAS-SDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYS 293

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
                 +A+ +F  +  RD++ +  MI  + QN   +D+L     +  ++ G      S 
Sbjct: 294 SAGKLADAEFLFWNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSS 353

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           AL A +   A+   R++H   +   L  N++VG  LI  YGK   + DA R+F + +   
Sbjct: 354 ALGACSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIF-QLMPNH 412

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY----SFLAVLTA---LCNAGLA 319
           + ++ N ++  YA   D +  +++F  +  RG     Y    + L   T+   L N GL 
Sbjct: 413 DVVSCNILIGSYAVLEDGTKAMQVFFWMR-RGEVKLNYITIVNILGSFTSSNDLRNYGLP 471

Query: 320 GESEKWIERMKVRYKLEPGL--EHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             +          Y +  G   + Y    LI+   + G LE +  +   +        W 
Sbjct: 472 LHA----------YTIHAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRI-INRSVVSWN 520

Query: 376 ALLSFSAIHGKADMASKM 393
           A+++ +  HG  + + K+
Sbjct: 521 AMIAANVQHGHGEESLKL 538



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 147/319 (46%), Gaps = 14/319 (4%)

Query: 54  RLFNHIPSPNIVSWTALISA-HSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           RLF  +P  N+VSWTAL+ A  SN  L  +L  +  M R        N    A++   C 
Sbjct: 100 RLFWEMPERNVVSWTALMVALSSNGHLEEALGYYRRMRRE---RIACNANAFATVVSLCG 156

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
           SL    + GL + S  +   L  +    ++L+          +A+K+F  + ERD V + 
Sbjct: 157 SLEDE-VAGLQVFSHVIVSGLQRQVSVANSLISMLGNLGRVHDAEKLFYRMEERDTVSWN 215

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDV---GSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
           A++  ++       S  VF+DMR   +    +T  C   ++ A+++  +      +H   
Sbjct: 216 ALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISVCASSDYVSYGSG--VHSLC 273

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
           + +GL   + V   L++ Y  AG ++DA  +F  N+S  + I+WN M++ Y Q G+    
Sbjct: 274 LRTGLHSYIPVVNALVNMYSSAGKLADAEFLF-WNMSRRDLISWNTMISSYVQNGNNMDA 332

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           L+    L      PD  +F + L A C++  A    + +  M ++  L   L     LI+
Sbjct: 333 LKTLGQLLHTNEGPDRMTFSSALGA-CSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLIT 391

Query: 348 AMGRAGRLEDAERIAMAMP 366
             G+   +EDAERI   MP
Sbjct: 392 MYGKCNSIEDAERIFQLMP 410



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 145/310 (46%), Gaps = 14/310 (4%)

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           LASL   C         G ++H+L+ K  L    + G+AL+H Y   +   +A+++F E+
Sbjct: 46  LASLVTACERWEEGRACGAAIHALTQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEM 105

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMR------SSDVGSTMYCVSGALRAAAELA 215
            ER+VV + A++V  + N  L ++L  +  MR      +++  +T+  + G+L    E+A
Sbjct: 106 PERNVVSWTALMVALSSNGHLEEALGYYRRMRRERIACNANAFATVVSLCGSLE--DEVA 163

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            ++    +  H +VSGL R V V   LI   G  G V DA ++F   +   ++++WNA++
Sbjct: 164 GLQ----VFSHVIVSGLQRQVSVANSLISMLGNLGRVHDAEKLF-YRMEERDTVSWNALV 218

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           + Y+ +G  S    +F  +   G    + + L  L ++C +         +  + +R  L
Sbjct: 219 SMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISVCASSDYVSYGSGVHSLCLRTGL 278

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
              +     L++    AG+L DAE +   M    D   W  ++S    +G    A K   
Sbjct: 279 HSYIPVVNALVNMYSSAGKLADAEFLFWNMS-RRDLISWNTMISSYVQNGNNMDALKTLG 337

Query: 396 RLIDINPYDD 405
           +L+  N   D
Sbjct: 338 QLLHTNEGPD 347


>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
          Length = 628

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/516 (34%), Positives = 288/516 (55%), Gaps = 11/516 (2%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N L   Y K+  L  + +LF+ +P  N+ +W A+++  +N      SL  FL M R   
Sbjct: 110 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRRE-- 167

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYSRFRSP 151
               P++  L S+F+ CA L    + G  +H+  ++  L D+  C GS+L H Y R    
Sbjct: 168 -GMHPDEFGLGSVFRCCAGLRDV-VTGRQVHAYVVRSGL-DRDMCVGSSLAHMYMRCGCL 224

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
              + V   +    +V    +I G  QN     +L  F  MRS  V + +     A+ + 
Sbjct: 225 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 284

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           ++LAA+ Q + IHG  + +G+D+ V V T L+  Y + G + D+ RVF       ++   
Sbjct: 285 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGS-DTFLL 343

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           +AM++ Y   G     +ELF  +   G  P + +FLA+L A  ++GL  E     E M  
Sbjct: 344 SAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y ++P ++HYTC++  +GR+G L++AE + ++MP  PD  +W+ LLS        DMA 
Sbjct: 404 TYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAE 463

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           ++ KR+I+++P+D ++YV+++N+ +   RW +V+EVRK M+D  VRKE G SW+E+KG +
Sbjct: 464 RIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHI 523

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F  GD  H R ++I   L E+M +  + GY P    +LH++ D EK  +L +HSEKLA
Sbjct: 524 HQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLA 583

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
           +AF  +S  P G  +R++KNLR+C DCH + K +S+
Sbjct: 584 IAFAFLS-LPEGVPIRVMKNLRVCDDCHLAIKLMSQ 618



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 41/186 (22%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+   R +H  A  SG   +      L+  Y   G ++ AR +F E +   N ++WN + 
Sbjct: 56  ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELF-ERIPRRNVMSWNILF 114

Query: 276 AGYAQQGDQSTVLELFH-----------------------------LLEMR--GFAPDEY 304
            GY + GD     +LF                               L+MR  G  PDE+
Sbjct: 115 GGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEF 174

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG----RAGRLEDAER 360
              +V    C AGL    +    R    Y +  GL+   C+ S++     R G L++ E 
Sbjct: 175 GLGSVFR--CCAGL---RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEA 229

Query: 361 IAMAMP 366
           +   +P
Sbjct: 230 VLRMLP 235


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 198/563 (35%), Positives = 310/563 (55%), Gaps = 16/563 (2%)

Query: 22  HARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--SP 78
           HA   K    + +I  N+L+ +Y +   + Y+  LF+ +  PN+VSWT+L+S + N   P
Sbjct: 29  HANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVNMGRP 88

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
            S     + +    +S  PN  TLA++  +C+ L+     G  +H+    L L       
Sbjct: 89  QSALWLYTKMSESEVS--PNGFTLATVINSCSILAD-LKTGKMVHAHVQILGLQGNLVVC 145

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           S+LV  Y +    D A+ VFD +  R+VV + AMI G+AQN +  ++L VF +  S  + 
Sbjct: 146 SSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFREFSSYMME 205

Query: 199 -STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               + ++  + A A L  +   +V HG  +  G + N +V + L+D Y K G    + +
Sbjct: 206 RPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASALVDMYAKCGSFLYSEK 265

Query: 258 VFDE--NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           VF    N SV   I + +M+ G A+ G     L LF  +  R   P++ +F+ +L A  +
Sbjct: 266 VFRRIRNPSV---IPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPNDVTFVGILHACSH 322

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD--AAV 373
           +GL  E  + +  M  ++ + P + HYTC++  + R GRL++A ++A ++   P+  A +
Sbjct: 323 SGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPNEGALL 382

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W  LLS S +HG+ DMA +  K LI+ N     AYV ++N  +  G W+    +R  M+ 
Sbjct: 383 WGTLLSSSRLHGRVDMAVEASKWLIEYNQQVAGAYVTLSNTYTLAGEWENAHSLRTEMEL 442

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH- 492
             V KE G SWIE+K  ++VF AGD   ER +++ + L EL       G V     ++  
Sbjct: 443 VGVHKEPGCSWIEIKDSIYVFYAGDLSCERGDEVISLLRELERRMMERGCVGGSTGLVFV 502

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V    K + +  HSE+LALAFGL+S  P+G T+R++KNLRIC DCHE+FK IS++VER+
Sbjct: 503 DVEQEVKEKIVGLHSERLALAFGLIS-IPKGVTIRVMKNLRICSDCHEAFKLISKIVERD 561

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
            VVRDVNR+H F +GSCTC D W
Sbjct: 562 FVVRDVNRFHHFKDGSCTCKDFW 584



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
           F+F +S H+   K  L +     + L++ Y RFR    A  +FDE+ E +VV + +++ G
Sbjct: 22  FIFAISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSG 81

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           +    R   +L ++  M  S+V    + ++  + + + LA ++  +++H H  + GL  N
Sbjct: 82  YVNMGRPQSALWLYTKMSESEVSPNGFTLATVINSCSILADLKTGKMVHAHVQILGLQGN 141

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           ++V + L+D YGK   V  AR VFD ++S  N ++W AM+AGYAQ G     LE+F   E
Sbjct: 142 LVVCSSLVDMYGKCNDVDGARMVFD-SMSCRNVVSWTAMIAGYAQNGKGYEALEVFR--E 198

Query: 296 MRGFA---PDEYSFLAVLTALCNAG 317
              +    P+ +   +V+ A  + G
Sbjct: 199 FSSYMMERPNHFMLASVINACASLG 223


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 185/564 (32%), Positives = 311/564 (55%), Gaps = 14/564 (2%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---N 76
           VH   L + S  D  +   LI  YS    + Y+ ++F+      I  W AL  A +   +
Sbjct: 99  VHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGH 158

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS---LSHAFLFGLSLHSLSLKLSLHD 133
               L ++  M R   +    ++ T   + K C +    +     G  +H+   +   + 
Sbjct: 159 GEEVLGLYWKMNR---IGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNS 215

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             +  + LV  Y+RF   D A  VF+ +  R+VV + AMI  +A+N +  ++L  F +M 
Sbjct: 216 HVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 275

Query: 194 SSDVGSTMYCVS--GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           +    S+   V+    L+A A LAA+EQ R+IHG+ +  GLD  + V + L+  YG+ G 
Sbjct: 276 TETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGK 335

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +   +RVFD  +   + ++WN++++ Y   G     +++F  +   G +P   +F++VL 
Sbjct: 336 LDVGQRVFDR-MHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLG 394

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + GL  E ++  E M   + ++P +EHY C++  +GRA RL++A ++   M  EP  
Sbjct: 395 ACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 454

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            VW +LL    IHG  ++A +  +RL  + P +   YV++A++ +    WDEV  V+K++
Sbjct: 455 KVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLL 514

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           + R ++K  GR W+EV+ K++ F++ D  +   E I+  L +L E+ +  GY+P    +L
Sbjct: 515 EHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVL 574

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           + +   EK   +  HSEKLALAFGL++ + +G+ +RI KNLR+C DCH   K+IS+ +E+
Sbjct: 575 YELETEEKERIVLGHSEKLALAFGLINTS-KGEPIRITKNLRLCEDCHLFTKFISKFMEK 633

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRDVNR+HRF NG C+CGD W
Sbjct: 634 EILVRDVNRFHRFKNGVCSCGDYW 657


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 191/616 (31%), Positives = 306/616 (49%), Gaps = 72/616 (11%)

Query: 28  SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSM 87
           +S  + S+   L+ +Y+       + ++F+ +   N+V +  +I ++ N+    +  L  
Sbjct: 48  NSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVF 107

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
                  F P+  T   + K C S S    +GL +H   LK+ L    F G+ L+  Y +
Sbjct: 108 REMVNGGFRPDNYTYPCVLKAC-SCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGK 166

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR---SSDVGSTMYCV 204
                 A++VFDE+  +DVV + +M+ G+A N R  D+L +  +M        G TM  +
Sbjct: 167 CGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASL 226

Query: 205 SGAL----------------------------------------RAAAELAAMEQCRV-- 222
             A+                                        +A      ME+CRV  
Sbjct: 227 MPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEP 286

Query: 223 -----------------------IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                                  IH +     L  N+++   LID Y + G + DA+RVF
Sbjct: 287 DAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVF 346

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D  +   +  +W ++++ Y   G     + LF  +   G APD  +F+A+L+A  ++GL 
Sbjct: 347 DR-MKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLL 405

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E   + ++M   Y++ P +EHY CL+  +GRAGR+++A  I   MP EP+  VW  LLS
Sbjct: 406 DEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLS 465

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +    D+       L+ + P     YV+++N+ +  GRW EV E+R VMK +++RK 
Sbjct: 466 SCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKT 525

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S +E+  +VH FLAGD  H ++++IY +L  L+ + + LGYVP  D  LH+V + +K
Sbjct: 526 PGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDK 585

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              L  HSEKLA+ F L++   +   +RI KNLR+C DCH + K IS++VEREI+VRD N
Sbjct: 586 EGHLAVHSEKLAIVFALLN--TQEYQIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTN 643

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+CGD W
Sbjct: 644 RFHHFKDGVCSCGDYW 659



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 128/260 (49%), Gaps = 7/260 (2%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           LH++   L+ H  P  G  L+  Y+    P   +KVFDE+ +R+VV Y  MI  +  N R
Sbjct: 40  LHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHR 99

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
             D L VF +M +       Y     L+A +    +    +IHG  +  GLD N+ VG G
Sbjct: 100 YDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNG 159

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           LI  YGK G + +ARRVFDE +   + ++WN+M+AGYA        LE+   +E  G  P
Sbjct: 160 LIAMYGKCGCLFEARRVFDE-MIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKP 218

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           D  +  +++ A+ N   + E+  ++E++ V  +    L  +  +I    +      A  +
Sbjct: 219 DGCTMASLMPAVANT--SSENVLYVEKIFVNLE-RKNLISWNVMIRVYMKNSLPTQAVDL 275

Query: 362 AMAMP---FEPDAAVWRALL 378
            + M     EPDA  + ++L
Sbjct: 276 YLQMEKCRVEPDAITFASVL 295


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 177/547 (32%), Positives = 314/547 (57%), Gaps = 10/547 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS--PL-SLNIFLSML 88
           D  + + L+  YS+   +  ++R+F+ +P  + V+W+ +++   ++  P+ +L ++  M 
Sbjct: 145 DVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMR 204

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
            H       ++  +  + + C +L+     G S+H   L+  +       ++LV  Y++ 
Sbjct: 205 EH---GVAEDEVVMVGVIQAC-TLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKN 260

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              D A++VF  +  R+ V + A+I GFAQN    ++L +F +M +S +      +  AL
Sbjct: 261 GHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSAL 320

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
            A A++  ++  + IHG  ++  L+   I+GT ++D Y K G +  AR++F++ LS  + 
Sbjct: 321 LACADVGFLKLGKSIHGF-ILRRLEFQCILGTAVLDMYSKCGSLESARKLFNK-LSSRDL 378

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           + WNAM+A     G     L LF  L   G  PD  +F ++L+AL ++GL  E + W +R
Sbjct: 379 VLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDR 438

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M   + +EP  +H  C++  + R+G +E+A  +  +M  EP   +W ALLS    + K +
Sbjct: 439 MITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLE 498

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           +   + K++++  P D     +V+N+ +   +WD+V E+RK+MKD   +K  G S IEV 
Sbjct: 499 LGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVH 558

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
           G  H F+  D+ H + ++I   +++L  E  ++GYVP  + + H++ +  K + L YHSE
Sbjct: 559 GTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSE 618

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           +LA+AFGL++ +P G  L I+KNLR+C DCH++ KYIS++V+REIVVRD  R+H F +G+
Sbjct: 619 RLAIAFGLLNTSP-GTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGA 677

Query: 569 CTCGDLW 575
           C+CGD W
Sbjct: 678 CSCGDYW 684



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 13/186 (6%)

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSI-AWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
           L   Y + G +  A      + S  + I AWNA++A  ++ G     L +F  L      
Sbjct: 50  LAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPSSA-R 108

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVR-YKLEPGLEHYTC--LISAMGRAGRLED 357
           PD  +F   LTA    G    +E     ++VR +    G + + C  L+    R G + D
Sbjct: 109 PDSTTFTLALTACARLGDLDAAEA----VRVRAFAAGYGRDVFVCSALLHVYSRCGAMGD 164

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY---VIVANV 414
           A R+   MP   D   W  +++     G+   A  M  R+ +    +D      VI A  
Sbjct: 165 AIRVFDGMP-RKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACT 223

Query: 415 LSGVGR 420
           L+G  R
Sbjct: 224 LTGNTR 229


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/545 (34%), Positives = 296/545 (54%), Gaps = 42/545 (7%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D + +N +++  SK+  +  +  +F  +P+ N VSW A+++A ++S              
Sbjct: 102 DVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSG------------- 148

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                 +     +LF+     + A L+                    +A+V  Y    + 
Sbjct: 149 ------DMGAAENLFRNAPEKTDAILW--------------------TAMVSGYMDTGNV 182

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGALRA 210
             A + F  +  R++V + A++ G+ +NSR  D+L VF  M   + V      +S  L  
Sbjct: 183 QKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLG 242

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            + L+A+   R +H   +   L R++ VGT L+  Y K G + DA ++FDE +   + +A
Sbjct: 243 CSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDE-MHTKDIVA 301

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WNAM++GYAQ G     ++LF  ++  G  PD  + LAVLTA  + GL     +  E M+
Sbjct: 302 WNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQ 361

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             Y +EP ++HY+C++  + RAG LE A  +  +MPFEP  + +  LL+   ++   + A
Sbjct: 362 EAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFA 421

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
               ++LI+ +P +  AYV +AN+ +   RWD+V+ VR+ MKD  V K  G SW+E+KG 
Sbjct: 422 EFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGV 481

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
            H F + DR+H + + I+ KL  L +  + +GY P  D  LH+V +  K + L  HSEKL
Sbjct: 482 RHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKL 541

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AFGL+S +P G TLRI KNLRIC DCH + K IS++ +REI++RD  R+H F  G C+
Sbjct: 542 AIAFGLISTSP-GMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCS 600

Query: 571 CGDLW 575
           CGD W
Sbjct: 601 CGDYW 605



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 92/171 (53%), Gaps = 6/171 (3%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLS 86
           + D  ++  +++ Y  +  +  ++  F  +P  N+VSW A+++ +   S +  +L +F +
Sbjct: 163 KTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKT 222

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M+    +   PN  TL+S+   C++LS A  FG  +H   +KL L      G++L+  Y 
Sbjct: 223 MVEDAIVQ--PNPSTLSSVLLGCSNLS-ALGFGRQVHQWCMKLPLGRSITVGTSLLSMYC 279

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           +    D+A K+FDE+  +D+V + AMI G+AQ+     ++ +F  M+   V
Sbjct: 280 KCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGV 330



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 109/259 (42%), Gaps = 31/259 (11%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           D A +VF  +  RDV  +  M+ G ++N  + ++ ++F  M +              R A
Sbjct: 89  DGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPA--------------RNA 134

Query: 212 AELAAMEQCRVIHGH-AVVSGLDRN------VIVGTGLIDGYGKAGIVSDARRVFDENLS 264
               AM   R   G       L RN       I+ T ++ GY   G V  A   F   + 
Sbjct: 135 VSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYF-RAMP 193

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCN---AGLAG 320
           V N ++WNA++AGY +       L +F  ++E     P+  +  +VL    N    G   
Sbjct: 194 VRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGR 253

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           +  +W  ++ +   +  G    T L+S   + G L+DA ++   M    D   W A++S 
Sbjct: 254 QVHQWCMKLPLGRSITVG----TSLLSMYCKCGDLDDACKLFDEM-HTKDIVAWNAMISG 308

Query: 381 SAIHGKADMASKMGKRLID 399
            A HG    A K+ +++ D
Sbjct: 309 YAQHGGGRKAIKLFEKMKD 327


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 191/586 (32%), Positives = 303/586 (51%), Gaps = 34/586 (5%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA+ +++  + D  +   L+ + SK + + Y+ R+F +  +PN+  +TALI    +S  
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
             +      R    S LP+   +AS+ K C S   A   G  +HS +LKL L        
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGS-QLALREGREVHSRALKLGLSSNRLVRL 186

Query: 140 ALVHFYSRFRSPDNAKKVFDE------------------------------IRERDVVCY 169
            ++  Y +     +A++VF+E                              +R +D VC+
Sbjct: 187 RIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
            AMI GF +N  +  +L  F  M+  +V    + +   L A ++L A+E  R +H +   
Sbjct: 247 TAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
             ++ N+ VG  LI+ Y + G + +A+ VFDE +   + I +N M++G +  G     +E
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDE-MKDRDVITYNTMISGLSMNGKSRQAIE 365

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
           LF ++  R   P   +F+ VL A  + GL     K    M   Y +EP +EHY C++  +
Sbjct: 366 LFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLL 425

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409
           GR GRLE+A  +   M   PD  +   LLS   +H   ++  ++ K L D    D   YV
Sbjct: 426 GRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYV 485

Query: 410 IVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYT 469
           ++++V +  G+W E A+VR  MK+  ++KE G S IEV  ++H FL GD  H R E IY 
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYE 545

Query: 470 KLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIV 529
           KL EL       GY P  + +L ++ D EK  AL  HSE+LA+ +GL+S  P    +R++
Sbjct: 546 KLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEP-CTVIRVM 604

Query: 530 KNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           KNLR+C DCH + K I+++  R++VVRD NR+H F NG+C+CGD W
Sbjct: 605 KNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 158/359 (44%), Gaps = 44/359 (12%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           +Q+ + SL +    ++      L +H+  ++      PF    L+   S+  + D A ++
Sbjct: 48  DQKQIISLLQRSKHINQV----LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI 103

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           F      +V  Y A+I GF  +    D++ +++ M    +    Y ++  L+A     A+
Sbjct: 104 FQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLAL 163

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE---------------- 261
            + R +H  A+  GL  N +V   +++ YGK G + DARRVF+E                
Sbjct: 164 REGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYS 223

Query: 262 -------------NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
                         +   +++ W AM+ G+ +  + +  LE F  ++     P+E++ + 
Sbjct: 224 DQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVC 283

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           VL+A    G A E  +W+     ++++E  L     LI+   R G +++A+ +   M  +
Sbjct: 284 VLSACSQLG-ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-D 341

Query: 369 PDAAVWRALLSFSAIHGKADMASKM-----GKRLIDINPYDDSAYVIVANVLSGVGRWD 422
            D   +  ++S  +++GK+  A ++     G+RL   N      +V V N  S  G  D
Sbjct: 342 RDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTN----VTFVGVLNACSHGGLVD 396


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 187/589 (31%), Positives = 301/589 (51%), Gaps = 36/589 (6%)

Query: 21  VHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA+ +KS       +   LI  Y K  LL  +L+LF+ +P  + V+W  ++SA + S L
Sbjct: 30  LHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNL 89

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCG 138
               F   L        P+    +SL K CA+L    +  G  LH+  L     +     
Sbjct: 90  PHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVK 149

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD------- 191
           S+LV  Y++F  PD  + VFD I E   + + AMI G+A++ R +++L +F +       
Sbjct: 150 SSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLY 209

Query: 192 ---------MRSSDVGSTMY----------------CVSGALRAAAELAAMEQCRVIHGH 226
                    ++S +    +Y                 +S  + A A  A  E  + +H  
Sbjct: 210 AWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCV 269

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
            +  G +  + +   L+D Y K   V  A+ +F E +   + ++W +++ G AQ G    
Sbjct: 270 VITLGYESCLFISNALVDMYAKCSDVVAAKYIFCE-MRRKDVVSWTSIIVGTAQHGLAEE 328

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            L L+  + + G  P+E +F+ ++ A  + GL  +     + M   + + P L+HYTCL+
Sbjct: 329 ALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLL 388

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
               R+G L++AE +   MP +PD   W ALLS    HG   MA ++   L+D+ P D S
Sbjct: 389 DLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPS 448

Query: 407 AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
           +Y++++N+ +G G W+ V+ VRK+M  + V+K  G S +++  +  VF AG+      ++
Sbjct: 449 SYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDE 508

Query: 467 IYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTL 526
           I   + +L  E  R GYVP    +L ++  +EK   L++HSE+LALA+GL+   P G T+
Sbjct: 509 ILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVP-GTTI 567

Query: 527 RIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           RIVKNLR+C DCH   K IS +  REI VRDV RYH F +G C+C D W
Sbjct: 568 RIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 298/562 (53%), Gaps = 42/562 (7%)

Query: 51  YSLRLFNHIPSPNIVSWTALISAHS-NSPLSLNIFL--SMLRHPTLSFLPNQRTLASLFK 107
           Y   +F  +  PN   WTALI  ++   P   ++ L  SM R       P   T  +L K
Sbjct: 91  YPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQ---GIGPVSFTFTALLK 147

Query: 108 TCASLSHAFL-------------FGLSLHSLSLKLSLHDKPFC----------------- 137
            C++     L             FG  L+  +  + ++ K  C                 
Sbjct: 148 ACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVI 207

Query: 138 -GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  Y++  + + A ++FD +  +D+V + AM+ G+AQN+R  ++L VF  M+++ 
Sbjct: 208 SWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAG 267

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL--DRNVIVGTGLIDGYGKAGIVSD 254
           V +    + G + A A+L A +    +   A  SG     NV+VG+ LID Y K G V D
Sbjct: 268 VKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVED 327

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A +VF E +   N  ++++M+ G+A  G     +ELF  +      P+  +F+ VLTA  
Sbjct: 328 AYKVF-ERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACS 386

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AG+  + ++    M+  + + P  +HY C++  +GRAGRLE+A  +   MP  P   VW
Sbjct: 387 HAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVW 446

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    IHG  DMA      L ++ P     Y++++N+ +  GRWD+V++VRK+M+ +
Sbjct: 447 GALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAK 506

Query: 435 RVRKEGGRSWIE-VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
            ++K  G SW+E  KG +H F AGD  H ++ +I   L +L++  + LGY P    + ++
Sbjct: 507 GLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYD 566

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           + D EK+  L  HSEKLALAFGL++    G T+RIVKNLRIC DCH      S++  REI
Sbjct: 567 ISDEEKKRLLMSHSEKLALAFGLLT-TNAGCTIRIVKNLRICEDCHSVMCGASQITGREI 625

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           VVRD  R+H F +G C+CG+ W
Sbjct: 626 VVRDNMRFHHFRDGRCSCGNFW 647



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 133/313 (42%), Gaps = 27/313 (8%)

Query: 32  DRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
           DR +  + +LI  Y+K   +  +  LF+ +P  ++V+WTA+++ ++ +           R
Sbjct: 203 DRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFER 262

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHA----FLFGLSLHSLSLKLSLHDKPFCGSALVHFY 145
                   ++ TL  +   CA L  A    ++  ++  S             GSAL+  Y
Sbjct: 263 MQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQS---GFGPTSNVVVGSALIDMY 319

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205
           ++  S ++A KVF+ + ER+V  Y +MIVGFA +     ++ +F +M  +++        
Sbjct: 320 AKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFI 379

Query: 206 GALRAAAELAAMEQCRVIHG-----HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
           G L A +    +EQ + +       H V    D        ++D  G+AG + +A  +  
Sbjct: 380 GVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYAC----MVDLLGRAGRLEEALNLVK 435

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTV-LELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
                 +   W A++      G+     +   HL E+       Y  L+ + A  +AG  
Sbjct: 436 MMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYA--SAG-- 491

Query: 320 GESEKWIERMKVR 332
               +W +  KVR
Sbjct: 492 ----RWDDVSKVR 500


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 293/540 (54%), Gaps = 6/540 (1%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSP---NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           L+  YS+ + +  +L++ + +P     +I S+ ++++A   S         + R      
Sbjct: 158 LVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECV 217

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
             +  T   +   CA +    L GL +H+  L+  L    F GS L+  Y +     NA+
Sbjct: 218 AWDHVTYVGVMGLCAQIRDLQL-GLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNAR 276

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            VFD ++ R+VV + A++  + QN    +SL++F  M         Y  +  L A A +A
Sbjct: 277 NVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIA 336

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+    ++H      G   +VIV   LI+ Y K+G +  +  VF + +   + I WNAM+
Sbjct: 337 ALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTD-MIYRDIITWNAMI 395

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
            GY+  G     L++F  +      P+  +F+ VL+A  + GL  E   ++  +   +K+
Sbjct: 396 CGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKI 455

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           EPGLEHYTC+++ + RAG L++AE        + D   WR LL+   +H   D+  ++ +
Sbjct: 456 EPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAE 515

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
            ++ ++P+D   Y +++N+ +   RWD V  +RK+M++R ++KE G SW++++  +HVFL
Sbjct: 516 SVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFL 575

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
           +    H  +  IY K+ +L+   + LGYVP    +LH+V D +K   L YHSEKLALA+G
Sbjct: 576 SEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYG 635

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           L+   P    +RI+KNLR+C DCH + K IS+V  R I+VRD NR+H F +GSCTC D W
Sbjct: 636 LMK-IPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 178/413 (43%), Gaps = 22/413 (5%)

Query: 24  RALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNI 83
           R   S+ +  S  N+L+  Y K   L  +  LF+ +P  N+VSW  L++ + +    L +
Sbjct: 41  RNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEV 100

Query: 84  FLSMLRHPTL-SFLPNQRTLASLFKTCASLSHAFLF--GLSLHSLSLKLSLHDKPFCGSA 140
            +      +L +  PN+    +    C   SH      G+  H L  K  L    +  SA
Sbjct: 101 LVLFKNMVSLQNACPNEYVFTTALSAC---SHGGRVKEGMQCHGLLFKFGLVCHQYVKSA 157

Query: 141 LVHFYSRFRSPDNAKKVFDEI---RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           LVH YSR    + A +V D +      D+  Y +++    ++ R  +++ V   M    V
Sbjct: 158 LVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECV 217

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                   G +   A++  ++    +H   +  GL  +  VG+ LID YGK G V +AR 
Sbjct: 218 AWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARN 277

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VFD  L   N + W A+M  Y Q G     L LF  ++  G  P+EY+F  +L A   AG
Sbjct: 278 VFD-GLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNAC--AG 334

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYT----CLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           +A      +   +V    + G +++      LI+   ++G ++ +  +   M +  D   
Sbjct: 335 IAALRHGDLLHARVE---KLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYR-DIIT 390

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
           W A++   + HG    A ++ + ++      +  YV    VLS       V E
Sbjct: 391 WNAMICGYSHHGLGKQALQVFQDMVSAEECPN--YVTFIGVLSAYSHLGLVKE 441


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 181/560 (32%), Positives = 298/560 (53%), Gaps = 12/560 (2%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H++ +K+S Q +  + + LI  Y+K   L  +  +       ++VSWT +I+ ++    
Sbjct: 495  IHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 554

Query: 80   ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKP 135
               +L  F  ML     S   ++  L +    CA L  A   G  +H+ +       D P
Sbjct: 555  DDKALTTFRQMLDRGIRS---DEVGLTNAVSACAGL-QALKEGQQIHAQACVSGFSSDLP 610

Query: 136  FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            F  +ALV  YS+  + + A   F++    D + + A++ GF Q+    ++L VFA M   
Sbjct: 611  F-QNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNRE 669

Query: 196  DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
             + S  +    A++AA+E A M+Q + +H     +G D    V   +I  Y K G +SDA
Sbjct: 670  GIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDA 729

Query: 256  RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            ++ F E LS+ N ++WNAM+  Y++ G  S  L+ F  +      P+  + + VL+A  +
Sbjct: 730  KKQFLE-LSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSH 788

Query: 316  AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             GL  +  ++ E M   Y L P  EHY C++  + RAG L  A+   + MP EPDA VWR
Sbjct: 789  IGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWR 848

Query: 376  ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
             LLS   +H   ++       L+++ P D + YV+++N+ +   +WD     R+ MK++ 
Sbjct: 849  TLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKG 908

Query: 436  VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
            V+KE G+SWIEVK  +H F  GD+ H   ++I+    +L +    +GYV     +L  + 
Sbjct: 909  VKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQ 968

Query: 496  DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
              +K   ++ HSEKLA++FGL+S  P    + ++KNLR+C DCH+  K++S+V  REI+V
Sbjct: 969  QEQKDPTIFIHSEKLAISFGLLS-LPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIV 1027

Query: 556  RDVNRYHRFLNGSCTCGDLW 575
            RD  R+H F  G+C+C D W
Sbjct: 1028 RDAYRFHHFEGGACSCKDYW 1047



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 180/413 (43%), Gaps = 6/413 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   K   A +  I   L+  Y+K + +  +L  F      N+V W  ++ A+     
Sbjct: 394 LHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDD 453

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
             N F    +      +PNQ T  S+ KTC  L    L G  +HS  +K S     +  S
Sbjct: 454 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLEL-GEQIHSQIIKTSFQLNAYVCS 512

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            L+  Y++    D A  +      +DVV +  MI G+ Q +    +L+ F  M    + S
Sbjct: 513 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 572

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               ++ A+ A A L A+++ + IH  A VSG   ++     L+  Y K G + +A   F
Sbjct: 573 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAF 632

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E     ++IAWNA+++G+ Q G+    L +F  +   G   + ++F + + A       
Sbjct: 633 -EQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANM 691

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +  K +  +  +   +   E    +IS   + G + DA++  + +  + + + W A+++
Sbjct: 692 KQG-KQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVS-WNAMIN 749

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVI-VANVLSGVGRWDEVAEVRKVM 431
             + HG    A     ++I  N   +   ++ V +  S +G  D+  E  + M
Sbjct: 750 AYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESM 802



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 196/452 (43%), Gaps = 39/452 (8%)

Query: 13  NTSTDP-RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           N S D  R +H++ LK     +  +   L+  Y     L  +L++F+ +P   I +W  +
Sbjct: 81  NGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKM 140

Query: 71  ISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           I   ++  LS  +F    R    +  PN+ T + + + C   S AF     +H+  +   
Sbjct: 141 IKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQG 200

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           L       + L+  YSR    D A++VFD +  +D   + AMI G ++N   V+++ +F 
Sbjct: 201 LGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFC 260

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           DM    +  T Y  S  L A  ++ ++E    +HG  +  G   +  V   L+  Y   G
Sbjct: 261 DMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG 320

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A  +F  N+S  +++ +N ++ G +Q G     +ELF  +++ G  PD  +  +++
Sbjct: 321 SLISAEHIF-SNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLV 379

Query: 311 TALCNAG--------------LAGESEKWIE-------------RMKVRYKLEPGLEH-- 341
            A  + G              L   S   IE                + Y LE  +E+  
Sbjct: 380 VACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVV 439

Query: 342 -YTCLISAMGRAGRLEDAERIAMAMPFE---PDAAVWRALLSFSAIHGKADMASKMGKRL 397
            +  ++ A G    L ++ RI   M  E   P+   + ++L      G  ++  ++  ++
Sbjct: 440 LWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 499

Query: 398 IDINPYDDSAYV--IVANVLSGVGRWDEVAEV 427
           I  + +  +AYV  ++ ++ + +G+ D   ++
Sbjct: 500 IKTS-FQLNAYVCSVLIDMYAKLGKLDTAWDI 530



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 138/312 (44%), Gaps = 24/312 (7%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN +TL  L + C   + +   G  LHS  LKL   +       L+ FY      D A K
Sbjct: 65  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALK 124

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA-AELA 215
           VFDE+ ER +  +  MI   A  S       +F  M + +V       SG L A      
Sbjct: 125 VFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSV 184

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A +    IH   +  GL ++ IV   LID Y + G V  ARRVFD  L + +  +W AM+
Sbjct: 185 AFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFD-GLYLKDHSSWVAMI 243

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           +G ++   +   + LF  + + G  P  Y+F +VL+A           K IE +++  +L
Sbjct: 244 SGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSAC----------KKIESLEIGEQL 293

Query: 336 EPGL--------EHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
             GL        + Y C  L+S     G L  AE I   M  + DA  +  L++  +  G
Sbjct: 294 H-GLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMS-QRDAVTYNTLINGLSQCG 351

Query: 386 KADMASKMGKRL 397
             + A ++ KR+
Sbjct: 352 YGEKAMELFKRM 363



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 155/382 (40%), Gaps = 9/382 (2%)

Query: 21  VHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HAR +       +I  N LI  YS++  +  + R+F+ +   +  SW A+IS  S +  
Sbjct: 192 IHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNEC 251

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            +           L  +P     +S+   C  +  +   G  LH L LKL      +  +
Sbjct: 252 EVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKI-ESLEIGEQLHGLVLKLGFSSDTYVCN 310

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV  Y    S  +A+ +F  + +RD V Y  +I G +Q      ++ +F  M+   +  
Sbjct: 311 ALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEP 370

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               ++  + A +    +   + +H +    G   N  +   L++ Y K   +  A   F
Sbjct: 371 DSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYF 430

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E   V N + WN M+  Y    D      +F  +++    P++Y++ ++L      G  
Sbjct: 431 LET-EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 489

Query: 320 GESEKWIERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              E+ I    ++   +  L  Y C  LI    + G+L+ A  I +      D   W  +
Sbjct: 490 ELGEQ-IHSQIIKTSFQ--LNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTTM 545

Query: 378 LSFSAIHGKADMASKMGKRLID 399
           ++    +   D A    ++++D
Sbjct: 546 IAGYTQYNFDDKALTTFRQMLD 567



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 162/413 (39%), Gaps = 11/413 (2%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LK    +D  + N L++ Y     L  +  +F+++   + V++  LI+  S    
Sbjct: 293 LHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 352

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                    R       P+  TLASL   C+S    F  G  LH+ + KL          
Sbjct: 353 GEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFS-GQQLHAYTTKLGFASNDKIEG 411

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL++ Y++    + A   F E    +VV +  M+V +     L +S  +F  M+  ++  
Sbjct: 412 ALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 471

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             Y     L+    L  +E    IH   + +    N  V + LID Y K G +  A  + 
Sbjct: 472 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDIL 531

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
               +  + ++W  M+AGY Q       L  F  +  RG   DE      ++A   AGL 
Sbjct: 532 IR-FAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQ 588

Query: 320 GESE-KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
              E + I            L     L++   + G +E+A  +A       D   W AL+
Sbjct: 589 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEA-YLAFEQTEAGDNIAWNALV 647

Query: 379 SFSAIHGKADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           S     G  + A    ++M +  ID N +   + V  A+  + + +  +V  V
Sbjct: 648 SGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAV 700


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 190/565 (33%), Positives = 314/565 (55%), Gaps = 19/565 (3%)

Query: 19   RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            R +H   +K+  ++  +++N L+  YSK   L+ +  +F  +    IVSWT+ I+A+   
Sbjct: 591  RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVRE 650

Query: 78   PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             L   ++ +F  M    +    P+  T+ S+   CA  S +   G  +HS  +K  +   
Sbjct: 651  GLYSDAIGLFDEM---QSKGVRPDIYTVTSIVHACAC-SSSLDKGRDVHSYVIKNGMGSN 706

Query: 135  PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-- 192
                +AL++ Y++  S + A+ VF +I  +D+V +  MI G++QNS   ++L +F DM  
Sbjct: 707  LPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK 766

Query: 193  --RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
              +  D+  TM CV   L A A LAA+++ R IHGH +  G   ++ V   L+D Y K G
Sbjct: 767  QFKPDDI--TMACV---LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCG 821

Query: 251  IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            ++  A+ +FD  +   + I+W  M+AGY   G  +  +  F+ + + G  PDE SF  +L
Sbjct: 822  LLVLAQLLFDM-IPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVIL 880

Query: 311  TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
             A  ++GL  E  K+   M+    +EP LEHY C++  + R G L  A +   +MP +PD
Sbjct: 881  NACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPD 940

Query: 371  AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
              +W  LLS   IH    +A K+ + + ++ P +   YV++ANV +   +W+EV ++RK 
Sbjct: 941  TTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKR 1000

Query: 431  MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
            M+ R  ++  G SWIEV GK ++F+AG+  H + + I   L +L  + +   Y  ++  +
Sbjct: 1001 MQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYV 1060

Query: 491  LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
            L N  D EK      HSEK A+AFG+++  P G+T+R+ KN R+C DCHE  K++S+  +
Sbjct: 1061 LINEDDMEKEMIQCGHSEKSAMAFGILN-LPPGRTVRVSKNQRVCGDCHEMGKFMSKTTK 1119

Query: 551  REIVVRDVNRYHRFLNGSCTCGDLW 575
            REIV+RD NR+H F +G C+C D +
Sbjct: 1120 REIVLRDSNRFHHFKDGLCSCRDAF 1144



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 202/411 (49%), Gaps = 19/411 (4%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   LK    ++ ++ N+LI  Y K   +  +  LF+ +  P++VSW ++I+    +  
Sbjct: 492 VHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGF 551

Query: 80  S---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           S   L IF+ ML    L    +  TL S+    A++ +  L G +LH   +K    ++  
Sbjct: 552 SGNGLEIFIQML---ILGVEVDLTTLVSVLVAWANIGNLSL-GRALHGFGVKACFSEEVV 607

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             + L+  YS+  + + A +VF ++ +  +V + + I  + +     D++ +F +M+S  
Sbjct: 608 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKG 667

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V   +Y V+  + A A  +++++ R +H + + +G+  N+ V   LI+ Y K G V +AR
Sbjct: 668 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 727

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM-RGFAPDEYSFLAVLTALCN 315
            VF + + V + ++WN M+ GY+Q    +  LELF  L+M + F PD+ +   VL A   
Sbjct: 728 LVFSK-IPVKDIVSWNTMIGGYSQNSLPNEALELF--LDMQKQFKPDDITMACVLPAC-- 782

Query: 316 AGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           AGLA  +  + I    +R      L     L+    + G L  A+ +   +P + D   W
Sbjct: 783 AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISW 841

Query: 375 RALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYVIVANVLSGVGRWDE 423
             +++   +HG  + A       R+  I P D+S++ ++ N  S  G  +E
Sbjct: 842 TVMIAGYGMHGFGNEAISTFNEMRIAGIEP-DESSFSVILNACSHSGLLNE 891



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 12/265 (4%)

Query: 61  SPNIVSWTALISAHSNSPLSLNIFLSM--------LRHPTLSFLPNQRTLASLFKTCASL 112
           SP+  + T  ++ + N+   +N F  M        L   + S+     +  S+ + CA  
Sbjct: 325 SPSFTNTTHSVTQNQNA--KINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAE- 381

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
             +   G  +HS+ +   +      G+ LV  Y         +K+FD+I    V  +  +
Sbjct: 382 KKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLL 441

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           +  +A+     +S+S+F  M+   V    Y  +  L+  A L  +++C+ +HG+ +  G 
Sbjct: 442 MSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGF 501

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
             N  V   LI  Y K G V  A  +FDE LS  + ++WN+M+ G    G     LE+F 
Sbjct: 502 GSNTAVVNSLIAAYFKFGGVESAHNLFDE-LSEPDVVSWNSMINGCVVNGFSGNGLEIFI 560

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAG 317
            + + G   D  + ++VL A  N G
Sbjct: 561 QMLILGVEVDLTTLVSVLVAWANIG 585



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 98/217 (45%), Gaps = 9/217 (4%)

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           A I  F +   L +++ +    +S ++G   YC    L+  AE  ++E  + +H   + +
Sbjct: 341 AKINKFCEMGDLRNAIELLTKSKSYELGLNSYC--SVLQLCAEKKSLEDGKRVHSVIISN 398

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS--IAWNAMMAGYAQQGDQSTVL 288
           G+  +  +G  L+  Y   G +   R++FD+   ++N     WN +M+ YA+ G+    +
Sbjct: 399 GISIDEALGAKLVFMYVNCGDLVQGRKIFDK---IMNDKVFLWNLLMSEYAKIGNFRESV 455

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
            LF  ++  G   + Y+F  VL      G   E ++ +    ++            LI+A
Sbjct: 456 SLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR-VHGYVLKLGFGSNTAVVNSLIAA 514

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
             + G +E A  +   +  EPD   W ++++   ++G
Sbjct: 515 YFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 550


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 181/559 (32%), Positives = 309/559 (55%), Gaps = 6/559 (1%)

Query: 19  RIVHARALKSSQAD-RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R  H  A+K+  A+ R ++N ++  Y +   +  + ++F  +   +  ++ ++I+ + + 
Sbjct: 128 RQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDR 187

Query: 78  PLSLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              L+  L ++R+ T      +  +  ++   CAS+  + L G  +H+ +LK  L    +
Sbjct: 188 G-QLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVL-GAQVHAQALKKRLELNVY 245

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GSALV  Y +     +A + F+ + E++VV + A++  + QN    D+L +F DM    
Sbjct: 246 VGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEG 305

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    +  + AL + A LAA+     +    + +G   +++V   L++ Y K+G + DA 
Sbjct: 306 VQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAH 365

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RVF  ++ + + ++WN ++ GYA  G     +E FH +      P   +F+ VL+A    
Sbjct: 366 RVFI-SMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQL 424

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E+  ++  M     + PG EHYTC++  + R GRL++AER  +      D   WR+
Sbjct: 425 GLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRS 484

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+   ++    +  ++ ++++ + P D   YV+++N+ +   RWD V +VRK M++R V
Sbjct: 485 LLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAV 544

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           RK  G SWI V   VHVF + +++H + + I  KL EL+++ + +GYVP +  +LH++ D
Sbjct: 545 RKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLEELIDQIKAIGYVPNFAVVLHDIDD 604

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K E L YHSEKLALAFGL+   P+G T+ I+KNLRIC DCH + K IS V  R+IVVR
Sbjct: 605 ERKEEHLMYHSEKLALAFGLIH-TPKGATIHIMKNLRICDDCHVAIKLISVVTSRKIVVR 663

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H    G C+C D W
Sbjct: 664 DAVRFHCIEGGICSCNDYW 682



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 175/370 (47%), Gaps = 9/370 (2%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           + +HAR + ++  D  ++NNLI+ Y+K   +  +  +F+ +P  N VS   L+S +++S 
Sbjct: 31  KALHARLITAAHFDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSGYASSG 90

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
                 L +LR   + F  N+  L++     A++  ++  G   H  ++K    ++ +  
Sbjct: 91  RHKE-SLQLLR--VVDFGMNEYVLSAAVSATANVR-SYDMGRQCHGYAVKAGFAEQRYVF 146

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +A+++ Y +    ++A KVF+ +   D   + +MI G+    +L  SL +  +M      
Sbjct: 147 NAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEK 206

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                    L   A +        +H  A+   L+ NV VG+ L+D YGK   V DA R 
Sbjct: 207 WDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRA 266

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E L   N ++W A+M  Y Q       L+LF  +EM G  P+E+++   L +   AGL
Sbjct: 267 F-EVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSC--AGL 323

Query: 319 AG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           A   +   +    ++      L     L++   ++G +EDA R+ ++MP   D   W  +
Sbjct: 324 AALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLR-DVVSWNLI 382

Query: 378 LSFSAIHGKA 387
           ++  A HG A
Sbjct: 383 ITGYAHHGLA 392


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 311/596 (52%), Gaps = 47/596 (7%)

Query: 21  VHARALKSSQADRS-IYNNLITNYSKSN--LLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           VHA  +++  +  S +   LI   +K +  + SY L +F  +  PN   WTA+I  ++  
Sbjct: 61  VHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQ 120

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LHD 133
            L   S N +  M R       P   T ++LFK C +  +  L G  +H+ ++ +     
Sbjct: 121 GLLSESTNFYTRMRRD---GVGPVSFTFSALFKACGAALNMDL-GKQVHAQTILIGGFAS 176

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC----------YG------------- 170
             + G++++  Y +      A+KVFDE+ ERDVV           YG             
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 171 --------AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
                   AM+ G+AQN R  ++L  F  M+   + +    ++G + A A+L A++    
Sbjct: 237 LKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296

Query: 223 IHGHAVVSGL--DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           I   A  SG     NV+VG+ LID Y K G   +A +VF E +   N  ++++M+ GYA 
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF-EVMKERNVFSYSSMILGYAM 355

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G   + L+LFH +      P++ +F+ +L+A  +AGL  +  +   +M+  + + P  +
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           HY C++  +GRAG LE+A  +   MP EP+  VW ALL    IHG  D+A      L  +
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKL 475

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK-GKVHVFLAGDR 459
            P     Y++++N+ +  GRW+EV+++RKV++++  +K  G SW E K G++H F AGD 
Sbjct: 476 EPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDT 535

Query: 460 MHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG 519
            H R+ +I   L +L+E     GY P      +++ D EK   L  HSEKLALA+GL+  
Sbjct: 536 THPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLC- 594

Query: 520 APRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
              G T++I+KN+RIC DCH      S +  REI+VRD  R+H F NG+C+CG+ W
Sbjct: 595 TEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 190/559 (33%), Positives = 299/559 (53%), Gaps = 10/559 (1%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H   +K+  Q +  + + LI  Y+K   L+ +LR+   +P  ++VSWTA+I+ +    +
Sbjct: 485  IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544

Query: 80   ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               +L +F  M  +  + F  +    AS    CA +  A   G  +H+ S          
Sbjct: 545  FSEALQLFEEM-EYRGIQF--DNIGFASAISACAGI-RALRQGQQIHAQSYAAGFGADLS 600

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
              +AL+  Y+R      A   F++I +++ + + +++ G AQ+    ++L VF  M  ++
Sbjct: 601  INNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTE 660

Query: 197  VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                M+    A+ AAA LA ++Q + IH   + +G D    V   LI  Y K+G +SDA 
Sbjct: 661  AEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAW 720

Query: 257  RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            R F++ +S  N I+WNAM+ GY+Q G     L LF  +++ G  P+  +F+ VL+A  + 
Sbjct: 721  REFND-MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHI 779

Query: 317  GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            GL  E   + E M   + L P  EHY C++  +GRAG+L+ A      MP   DA +WR 
Sbjct: 780  GLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRT 839

Query: 377  LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            LLS   IH   ++  +    L+++ P D + YV+++N+ +   +W      RK+MKDR V
Sbjct: 840  LLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGV 899

Query: 437  RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            +KE GRSWIEVK  VH F AGD++H  T  IY  +  L      +GYV     +L+    
Sbjct: 900  KKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQ 959

Query: 497  REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             +K      HSEKLA+AFGL+S       +R++KNLR+C DCH   KY+S++  R I+VR
Sbjct: 960  GQKDPITHVHSEKLAIAFGLLS-LGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVR 1018

Query: 557  DVNRYHRFLNGSCTCGDLW 575
            D +R+H F  G C+C D W
Sbjct: 1019 DAHRFHHFDGGVCSCKDFW 1037



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 168/373 (45%), Gaps = 8/373 (2%)

Query: 21  VHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH+R          +  NL+ + YSK+  +  + ++FN I   +IV+W A+IS  S + L
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                L           P    L+S+      +   F  G  LH L +K   H + +  +
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKI-QLFELGEQLHCLVIKWGFHSETYVCN 300

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            LV  YSR R   +A+++F  +  RD V Y ++I G  Q      +L +F  M+   +  
Sbjct: 301 GLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKP 360

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               V+  L A A + A+ +   +H HA+ +G+  ++I+   L+D Y K   V  A + F
Sbjct: 361 DCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
                  N + WN M+  Y Q  + S   E+F  ++M G  P+++++ ++L    + G  
Sbjct: 421 -LTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
              E+ I    ++   +  +   + LI    + G+L  A RI   +P E D   W A+++
Sbjct: 480 YLGEQ-IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIA 537

Query: 380 FSAIHGKADMASK 392
               H   DM S+
Sbjct: 538 GYVQH---DMFSE 547



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 8/301 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H R  KS    +  + ++L+ NY +      ++++F+   + ++ SW  +I        
Sbjct: 80  LHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKS 139

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +  +F    R       PN  T A + K C     AF +   +HS +        P   +
Sbjct: 140 NFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVAN 199

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            L+  YS+    ++AKKVF+ I  +D+V + AMI G +QN    +++ +F DM +S++  
Sbjct: 200 LLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFP 259

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T Y +S  L A+ ++   E    +H   +  G      V  GL+  Y ++  +  A R+F
Sbjct: 260 TPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIF 319

Query: 260 DENLSVLNS---IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
               S +NS   +++N++++G  QQG     LELF  ++     PD  +  ++L+A  + 
Sbjct: 320 ----STMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASV 375

Query: 317 G 317
           G
Sbjct: 376 G 376



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 172/369 (46%), Gaps = 11/369 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---N 76
           +H+ A+K+   AD  +  +L+  YSK   +  + + F    + NIV W  ++ A+    N
Sbjct: 384 LHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDN 443

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S  IF  M        +PNQ T  S+ +TC SL  A   G  +H+  +K       +
Sbjct: 444 LSDSFEIFRQMQME---GMIPNQFTYPSILRTCTSLG-ALYLGEQIHTHVIKTGFQLNVY 499

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             S L+  Y+++     A ++   + E DVV + AMI G+ Q+    ++L +F +M    
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG 559

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +       + A+ A A + A+ Q + IH  +  +G   ++ +   LI  Y + G + +A 
Sbjct: 560 IQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAY 619

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             F E +   N+I+WN++++G AQ G     L++F  +       + +++ + ++A  + 
Sbjct: 620 LAF-EKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASL 678

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               + ++ I  M ++   +   E    LIS   ++G + DA R    M  E +   W A
Sbjct: 679 ANIKQGQQ-IHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNA 736

Query: 377 LLSFSAIHG 385
           +++  + HG
Sbjct: 737 MITGYSQHG 745



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 124/300 (41%), Gaps = 19/300 (6%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T  SLF+T           + LH    K     +P    +LV  Y R      A KVFDE
Sbjct: 70  TSGSLFET-----------MRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDE 118

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA-AELAAMEQ 219
              R V  +  MI  F           +F  M +  +    Y  +G L+A      A   
Sbjct: 119 NSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNY 178

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            + +H      G D + +V   LID Y K G +  A++VF+  + + + + W AM++G +
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN-CICMKDIVTWVAMISGLS 237

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G +   + LF  +      P  Y   +VL+A     L    E+ +  + +++      
Sbjct: 238 QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ-LHCLVIKWGFHS-- 294

Query: 340 EHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           E Y C  L++   R+ +L  AERI   M    D   + +L+S     G +D A ++  ++
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISGLVQQGFSDRALELFTKM 353



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 8/186 (4%)

Query: 195 SDVGSTMYCVSGALRAAAELAAME-QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           S+  + ++ + G L + +    M   CR+       SG D   ++   L+D Y + G   
Sbjct: 56  SNYQNYLWLLEGCLTSGSLFETMRLHCRISK-----SGFDGEPLLIDSLVDNYFRHGDQH 110

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A +VFDEN S  +  +WN M+  +  Q     V  LF  +   G  P+ Y+F  VL A 
Sbjct: 111 GAVKVFDEN-SNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC 169

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
               +A    K +      Y  +        LI    + G +E A+++   +  + D   
Sbjct: 170 VGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMK-DIVT 228

Query: 374 WRALLS 379
           W A++S
Sbjct: 229 WVAMIS 234


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 188/580 (32%), Positives = 296/580 (51%), Gaps = 57/580 (9%)

Query: 9   PQPQNTSTDPRI--------VH-ARALKSSQA--DRSIYNNLITNYSKSNLLSYSLRLFN 57
           PQP   S +  +        VH AR    S    D + +N +I+  ++  L+  + RLF+
Sbjct: 100 PQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFS 159

Query: 58  HIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF- 116
            +P  N VSW+A++S                                 +  C  L  A  
Sbjct: 160 AMPEKNCVSWSAMVSG--------------------------------YVACGDLDAAVE 187

Query: 117 -LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
             +   + S+             +A++  Y +F   + A+++F E+  R +V + AMI G
Sbjct: 188 CFYAAPMRSV----------ITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAG 237

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           + +N R  D L +F  M  + V      ++  L   + L+A++  + +H       L  +
Sbjct: 238 YVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSD 297

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
              GT L+  Y K G + DA  +F + +   + + WNAM++GYAQ G     L LF  ++
Sbjct: 298 TTAGTSLVSMYSKCGDLKDAWELFIQ-IPRKDVVCWNAMISGYAQHGAGKKALRLFDEMK 356

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G  PD  +F+AVL A  +AGL     ++   M+  + +E   EHY C++  +GRAG+L
Sbjct: 357 KEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKL 416

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
            +A  +  +MPF+P  A++  LL    IH   ++A    K L++++P   + YV +ANV 
Sbjct: 417 SEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVY 476

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELM 475
           +   RWD VA +R+ MKD  V K  G SWIE+   VH F + DR+H     I+ KL +L 
Sbjct: 477 AAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLE 536

Query: 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
           ++ +  GYVP  + +LH+VG+  K + L +HSEKLA+AFGL+   P G  +R+ KNLR+C
Sbjct: 537 KKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLK-VPLGVPIRVFKNLRVC 595

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            DCH + KYIS +  REI+VRD  R+H F +G C+C D W
Sbjct: 596 GDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ-GDQSTVLELF 291
           + NVI    LI  Y + G +  A RVF E++ V +++ WN+++A +A++ G      +LF
Sbjct: 38  NNNVIASNKLIASYVRCGDIDSAVRVF-EDMKVKSTVTWNSILAAFAKKPGHFEYARQLF 96

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             +      P+  S+  +L    +     ++  + + M ++      +  +  +ISA+ +
Sbjct: 97  EKIPQ----PNTVSYNIMLACHWHHLGVHDARGFFDSMPLK-----DVASWNTMISALAQ 147

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            G + +A R+  AMP E +   W A++S     G  D A
Sbjct: 148 VGLMGEARRLFSAMP-EKNCVSWSAMVSGYVACGDLDAA 185


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 311/596 (52%), Gaps = 47/596 (7%)

Query: 21  VHARALKSSQADRS-IYNNLITNYSKSN--LLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           VHA  +++  +  S +   LI   +K +  + SY L +F  +  PN   WTA+I  ++  
Sbjct: 61  VHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQ 120

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LHD 133
            L   S N +  M R       P   T ++LFK C +  +  L G  +H+ ++ +     
Sbjct: 121 GLLSESTNFYTRMRRD---GVGPVSFTFSALFKACGAALNMDL-GKQVHAQTILIGGFAS 176

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC----------YG------------- 170
             + G++++  Y +      A+KVFDE+ ERDVV           YG             
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 171 --------AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
                   AM+ G+AQN R  ++L  F  M+   + +    ++G + A A+L A++    
Sbjct: 237 SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296

Query: 223 IHGHAVVSGL--DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           I   A  SG     NV+VG+ LID Y K G   +A +VF E +   N  ++++M+ GYA 
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF-EVMKERNVFSYSSMILGYAM 355

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G   + L+LFH +      P++ +F+ +L+A  +AGL  +  +   +M+  + + P  +
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           HY C++  +GRAG LE+A  +   MP EP+  VW ALL    IHG  D+A      L  +
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKL 475

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK-GKVHVFLAGDR 459
            P     Y++++N+ +  GRW+EV+++RKV++++  +K  G SW E K G++H F AGD 
Sbjct: 476 EPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDT 535

Query: 460 MHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG 519
            H R+ +I   L +L+E     GY P      +++ D EK   L  HSEKLALA+GL+  
Sbjct: 536 THPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLC- 594

Query: 520 APRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
              G T++I+KN+RIC DCH      S +  REI+VRD  R+H F NG+C+CG+ W
Sbjct: 595 TEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 179/545 (32%), Positives = 300/545 (55%), Gaps = 9/545 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPLSLNI--FLSMLRHP 91
           + +NL   YSK  LLS + R+F+ +P  + V+WTA+I  ++ N  L   +  F  M R  
Sbjct: 78  VASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREG 137

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            +    +Q    S+      L   +L   S+H    K     +    +AL+  Y++    
Sbjct: 138 LVG--ADQHVFCSVLSASGGLKDGWL-SKSIHCCVTKAGFELEVAVRNALIDMYAKSMDV 194

Query: 152 DNAKKVFD-EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
           ++A +V   +    +VV   +MI G+ +   + ++L ++ ++R   V    +  S  ++ 
Sbjct: 195 ESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG 254

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A  A +EQ   +H   + + L R+  VG+ L+D YGK G++S + ++F+E +     IA
Sbjct: 255 CAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNE-IEYRTDIA 313

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WNA++  +AQ G     ++ F  +   G  P+  +F+++LTA  +AGL  E  K+   MK
Sbjct: 314 WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMK 373

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             + +EP  EHY+C+I   GRAGRL++A +    MP +P+A  W +LL    + G  ++ 
Sbjct: 374 EAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELG 433

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
               + L+ + P +   +V ++ + + +G+W++V  VRK+M+D R++K  G SW++   K
Sbjct: 434 EVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKK 493

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
            HVF + D  H + +DIY KL EL    +  GY+P    +  N+ D  K   L YHSE++
Sbjct: 494 THVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERI 553

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AF L+S  P  K + + KNLRIC DCH +FK+I +V  R+I+VRD +R+H F+NG C+
Sbjct: 554 AVAFALIS-MPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCS 612

Query: 571 CGDLW 575
           CGD W
Sbjct: 613 CGDYW 617



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 163/378 (43%), Gaps = 7/378 (1%)

Query: 59  IPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           +P  N VSWT L+S  S + +  +   +          P  R   S     A+   A L 
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPT-RFALSSAARAAAALGAPLP 59

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  LH + ++L    + F  S L   YS+      A +VFD++ ++D V + AMI G+A+
Sbjct: 60  GAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAK 119

Query: 179 NSRLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           N  L  ++  F DM R   VG+  +     L A+  L      + IH     +G +  V 
Sbjct: 120 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVA 179

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           V   LID Y K+  V  A RV   +    N ++  +M+ GY +       L ++  L  +
Sbjct: 180 VRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQ 239

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  P+E++F +++       L  +  + +    ++  L       + L+   G+ G +  
Sbjct: 240 GVEPNEFTFSSMIKGCAMQALLEQGAQ-LHAQVIKTDLIRDSFVGSTLVDMYGKCGLISL 298

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVL 415
           + ++   + +  D A W A+++  A HG    A +   R+I   I P +  A+V +    
Sbjct: 299 SMQLFNEIEYRTDIA-WNAVINVFAQHGHGREAIQAFDRMIYSGIRP-NHIAFVSLLTAC 356

Query: 416 SGVGRWDEVAEVRKVMKD 433
           S  G  DE  +    MK+
Sbjct: 357 SHAGLVDEGLKYFYSMKE 374



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 13/148 (8%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +HA+ +K+    D  + + L+  Y K  L+S S++LFN I     ++W A+I+    H +
Sbjct: 267 LHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGH 326

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF--GLS-LHSLSLKLSLHD 133
              ++  F  M+        PN     SL   C   SHA L   GL   +S+     +  
Sbjct: 327 GREAIQAFDRMIYS---GIRPNHIAFVSLLTAC---SHAGLVDEGLKYFYSMKEAHGIEP 380

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           K    S ++  Y R    D A K   E+
Sbjct: 381 KEEHYSCIIDTYGRAGRLDEAYKFISEM 408


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 194/586 (33%), Positives = 308/586 (52%), Gaps = 63/586 (10%)

Query: 35  IYNNLITNYSKS---NLLSYSLRLFNHIPSPNIVSWTALISA--HSNSPLS-LNIFLSML 88
            +  L+ N + S   ++L+YSLRLF+H P+P+   +  LI +  HS++PLS L  F+ +L
Sbjct: 44  FFGKLLLNCAVSISDHVLNYSLRLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLL 103

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           RHPTL  LP+  + A   K  A+   +   G+ LHS + +    D  F G+ L+  Y+  
Sbjct: 104 RHPTL--LPDSFSFAFTLKGIANDGCSKRQGIQLHSHAFRHGFDDHIFVGTTLISMYAEC 161

Query: 149 RSPDNAKKVFDEIRERDVVCYGA------------------------------------- 171
              + A+KVFDE+ + +VV + A                                     
Sbjct: 162 GCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVSFGWREVVFCEMKMRDDASWS 221

Query: 172 -MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
            MIVGFA++    D+   F ++       +   ++G L A A+  A E  +++HG    +
Sbjct: 222 TMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKA 281

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           G    V V   LID Y K G V  A+ VF+ +L               A  G     + +
Sbjct: 282 GFLCIVSVNNALIDTYSKCGNVDMAKLVFNISL---------------AMHGRADEAIRV 326

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           FH +E  G  PD  +F+++L A  ++GL  +      +M+  Y +EP +EHY C++   G
Sbjct: 327 FHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYG 386

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           RA RL+ A      MP  P+  +WR LL   +IHG  ++A  +  RL +++P +   +V+
Sbjct: 387 RAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVL 446

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
           ++NV +  G+W +VA +R+ M ++ ++K  G S IE+    + F+AG++ +E T++ + K
Sbjct: 447 LSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDKVNYGFVAGEKPNEVTKEAHDK 506

Query: 471 LAELMEEC-ERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIV 529
           L E+M    E  GY P    +LH+V + EK +++  HSEKLA AFG ++  P+G+ LRIV
Sbjct: 507 LREIMLRLREEEGYAPQVRSVLHDVEEEEKEDSMSKHSEKLAAAFG-IAKLPKGRILRIV 565

Query: 530 KNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           KNLR+C DCH   K IS+V + EI+VRD +R+H F  G C+C D W
Sbjct: 566 KNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKGGFCSCRDYW 611


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 177/562 (31%), Positives = 306/562 (54%), Gaps = 19/562 (3%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           ++  AR L      R +  +N +++ Y++   +  + RLF+  P  ++ +WTA++S ++ 
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ 267

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + +   +  +F +M     +S+  N    A + +     +      +   +++       
Sbjct: 268 NGMLEEARRVFDAMPERNAVSW--NAMVAAYIQRRMMDEAKELFNMMPCRNVA------- 318

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + ++  Y++    + AK VFD + ++D V + AM+  ++Q     ++L +F +M 
Sbjct: 319 ---SWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
                      +  L   A++AA+E    +HG  + +G      VG  L+  Y K G + 
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNME 435

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DAR  F+E +   + ++WN M+AGYA+ G     LE+F ++      PD+ + + VL A 
Sbjct: 436 DARNAFEE-MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            ++GL  +   +   M   + +    EHYTC+I  +GRAGRL +A  +   MPFEPD+ +
Sbjct: 495 SHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTM 554

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL  S IH   ++     +++ ++ P +   YV+++N+ +  G+W +  ++R +M++
Sbjct: 555 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 614

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R V+K  G SWIEV+ KVH F AGD +H   E IY  L +L    ++ GYV   D +LH+
Sbjct: 615 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 674

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + EK   L YHSEKLA+A+G+++  P G+ +R++KNLR+C DCH +FKYIS +  R I
Sbjct: 675 VEEEEKEHMLKYHSEKLAVAYGILN-IPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLI 733

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD NR+H F  GSC+CGD W
Sbjct: 734 LLRDSNRFHHFRGGSCSCGDYW 755



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 150/331 (45%), Gaps = 33/331 (9%)

Query: 10  QPQNTSTDPRIV-HARALKSSQADR----------SIYNNLITNYSKSNLLSYSLRLFNH 58
           +P+   ++  I  H RA + + A+R          S YN ++  YS +  L  +  LF  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 59  IPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           IP P+  S+  L+ A     L+++  L+  R      +P + ++       +  +H    
Sbjct: 95  IPRPDNYSYNTLLHA-----LAVSSSLADARG-LFDEMPVRDSVTYNVMISSHANHGL-- 146

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
            +SL      L+        + ++  Y R    + A+ +F+   E D + + A++ G+ Q
Sbjct: 147 -VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQ 205

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
             ++ ++  +F  M   DV S    VSG  R       M + R +   A V    R+V  
Sbjct: 206 WGKMSEARELFDRMPGRDVVSWNIMVSGYARR----GDMVEARRLFDAAPV----RDVFT 257

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            T ++ GY + G++ +ARRVFD  +   N+++WNAM+A Y Q+       ELF+++  R 
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDA-MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN 316

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            A    S+  +LT    AG+  E++   + M
Sbjct: 317 VA----SWNTMLTGYAQAGMLEEAKAVFDTM 343



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 165/384 (42%), Gaps = 45/384 (11%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
           + D   YN L+   + S+ L+ +  LF+ +P  + V++  +IS+H+N  L     +S+ R
Sbjct: 97  RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGL-----VSLAR 151

Query: 90  H-----PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
           H     P    +     LA+  +         LF       ++  +         AL+  
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWN---------ALMSG 202

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           Y ++     A+++FD +  RDVV +  M+ G+A+   +V++  +F      DV +    V
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 205 SGALR------AAAELAAMEQCRVIHGHAVVSG------LD-----------RNVIVGTG 241
           SG  +      A     AM +   +  +A+V+       +D           RNV     
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT 322

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           ++ GY +AG++ +A+ VFD  +   ++++W AM+A Y+Q G     L+LF  +   G   
Sbjct: 323 MLTGYAQAGMLEEAKAVFD-TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV 381

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           +  +F  VL+  C    A E    +    +R     G      L++   + G +EDA R 
Sbjct: 382 NRSAFACVLST-CADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA-RN 439

Query: 362 AMAMPFEPDAAVWRALLSFSAIHG 385
           A     E D   W  +++  A HG
Sbjct: 440 AFEEMEERDVVSWNTMIAGYARHG 463



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 34/250 (13%)

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD------------VGST 200
           +A+++F  +  R    Y AM+ G++ N RL  + S+F  +   D            V S+
Sbjct: 56  DAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSS 115

Query: 201 MYCVSG-----ALRAAAELAAMEQCRVIHG------HAVVSGLDRNVIVGTGLIDGYGKA 249
           +    G      +R +     M      HG      H      +++ +   G++  Y + 
Sbjct: 116 LADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G V +AR +F+   +  ++I+WNA+M+GY Q G  S   ELF  +  R    D  S+  +
Sbjct: 176 GRVEEARGLFNSR-TEWDAISWNALMSGYVQWGKMSEARELFDRMPGR----DVVSWNIM 230

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           ++     G   E+ +  +   VR      +  +T ++S   + G LE+A R+  AMP E 
Sbjct: 231 VSGYARRGDMVEARRLFDAAPVR-----DVFTWTAVVSGYAQNGMLEEARRVFDAMP-ER 284

Query: 370 DAAVWRALLS 379
           +A  W A+++
Sbjct: 285 NAVSWNAMVA 294



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 17/199 (8%)

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           L+  VI     I  + +AG V+DA R+F   +   ++  +NAM+AGY+  G       LF
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLF-AAMPRRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             +      PD YS+  +L AL  +    ++    + M VR  +      Y  +IS+   
Sbjct: 93  RAIPR----PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHAN 143

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411
            G +  A       P E DA  W  +L+    +G+ + A  +       N   +   +  
Sbjct: 144 HGLVSLARHYFDLAP-EKDAVSWNGMLAAYVRNGRVEEARGL------FNSRTEWDAISW 196

Query: 412 ANVLSGVGRWDEVAEVRKV 430
             ++SG  +W +++E R++
Sbjct: 197 NALMSGYVQWGKMSEAREL 215


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 176/500 (35%), Positives = 276/500 (55%), Gaps = 8/500 (1%)

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P  L  +  MLR+  L   P++ + + + ++CA    A L G + H   +K+        
Sbjct: 12  PDFLGFYSGMLRNDVL---PSKTSFSLILRSCAISGEAQL-GEAFHCQIMKMGFEYDMIL 67

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDV--VCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            + L+ FY++    + A+ +FD + ER+   V +  MI  + Q      ++S+F  M+S 
Sbjct: 68  QTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSE 127

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           +V  T   +   L A A L A++    IHG+     L  +V++G  LID Y K G +  A
Sbjct: 128 NVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAA 187

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             VF   LS  N   WN+++ G    G     +  F ++E  G  PD  +F+ +L+   +
Sbjct: 188 IDVF-HGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSH 246

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           +GL    +++   M   Y LEPG+EHY C++  +GRAG L++A  +  AMP +P++ V  
Sbjct: 247 SGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLG 306

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           +LL    IH    +  ++ ++L++++P D   YV ++N+ + + RWD+V   RK+M  R 
Sbjct: 307 SLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRG 366

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           V K  G S IEV   VH F+AGD  H +   I   L E+ +E +  G+VP    +LH++ 
Sbjct: 367 VHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIE 426

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + EK  A+ YHSE++A+AFGL+S  P GKT+R+VKNLR C DCH + K IS   +REI+V
Sbjct: 427 EEEKEGAIRYHSERIAVAFGLMS-TPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIV 485

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD  R+H F NGSC+C D W
Sbjct: 486 RDRKRFHHFRNGSCSCNDYW 505


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 177/562 (31%), Positives = 306/562 (54%), Gaps = 19/562 (3%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           ++  AR L      R +  +N +++ Y++   +  + RLF+  P  ++ +WTA++S ++ 
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ 267

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + +   +  +F +M     +S+  N    A + +     +      +   +++       
Sbjct: 268 NGMLEEARRVFDAMPERNAVSW--NAMVAAYIQRRMMDEAKELFNMMPCRNVA------- 318

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + ++  Y++    + AK VFD + ++D V + AM+  ++Q     ++L +F +M 
Sbjct: 319 ---SWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
                      +  L   A++AA+E    +HG  + +G      VG  L+  Y K G + 
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNME 435

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DAR  F+E +   + ++WN M+AGYA+ G     LE+F ++      PD+ + + VL A 
Sbjct: 436 DARNAFEE-MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 494

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            ++GL  +   +   M   + +    EHYTC+I  +GRAGRL +A  +   MPFEPD+ +
Sbjct: 495 SHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTM 554

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL  S IH   ++     +++ ++ P +   YV+++N+ +  G+W +  ++R +M++
Sbjct: 555 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 614

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R V+K  G SWIEV+ KVH F AGD +H   E IY  L +L    ++ GYV   D +LH+
Sbjct: 615 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 674

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + EK   L YHSEKLA+A+G+++  P G+ +R++KNLR+C DCH +FKYIS +  R I
Sbjct: 675 VEEEEKEHMLKYHSEKLAVAYGILN-IPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLI 733

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD NR+H F  GSC+CGD W
Sbjct: 734 LLRDSNRFHHFRGGSCSCGDYW 755



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 151/331 (45%), Gaps = 33/331 (9%)

Query: 10  QPQNTSTDPRIV-HARALKSSQADR----------SIYNNLITNYSKSNLLSYSLRLFNH 58
           +P+   ++  I  H RA + + A+R          S YN ++  YS +  L  +  LF  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 59  IPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
           IP P+  S+  L+ A     L+++  L+  R      +P + ++       +  +H  + 
Sbjct: 95  IPRPDNYSYNTLLHA-----LAVSSSLADARG-LFDEMPVRDSVTYNVMISSHANHGLV- 147

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
             SL      L+        + ++  Y R    + A+ +F+   E DV+ + A++ G+ Q
Sbjct: 148 --SLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQ 205

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
             ++ ++  +F  M   DV S    VSG  R       M + R +   A V    R+V  
Sbjct: 206 WGKMSEARELFDRMPGRDVVSWNIMVSGYARR----GDMVEARRLFDAAPV----RDVFT 257

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            T ++ GY + G++ +ARRVFD  +   N+++WNAM+A Y Q+       ELF+++  R 
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDA-MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRN 316

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            A    S+  +LT    AG+  E++   + M
Sbjct: 317 VA----SWNTMLTGYAQAGMLEEAKAVFDTM 343



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 168/412 (40%), Gaps = 79/412 (19%)

Query: 9   PQPQNTSTDPRIVHARALKSSQADRS------------IYNNLITNYSKSNLLSYSLRLF 56
           P+P N S +  ++HA A+ SS AD               YN +I++++   L+S +   F
Sbjct: 96  PRPDNYSYNT-LLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF 154

Query: 57  NHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
           +  P  + VSW  +++A+  +           R      L N RT   +           
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNG----------RVEEARGLFNSRTEWDVISW-------- 196

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
                                 +AL+  Y ++     A+++FD +  RDVV +  M+ G+
Sbjct: 197 ----------------------NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGY 234

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR------AAAELAAMEQCRVIHGHAVVS 230
           A+   +V++  +F      DV +    VSG  +      A     AM +   +  +A+V+
Sbjct: 235 ARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVA 294

Query: 231 G------LD-----------RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
                  +D           RNV     ++ GY +AG++ +A+ VFD  +   ++++W A
Sbjct: 295 AYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD-TMPQKDAVSWAA 353

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           M+A Y+Q G     L+LF  +   G   +  +F  VL+  C    A E    +    +R 
Sbjct: 354 MLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST-CADIAALECGMQLHGRLIRA 412

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
               G      L++   + G +EDA R A     E D   W  +++  A HG
Sbjct: 413 GYGVGCFVGNALLAMYFKCGNMEDA-RNAFEEMEERDVVSWNTMIAGYARHG 463



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 19/200 (9%)

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           L+  VI     I  + +AG V+DA R+F   +   ++  +NAM+AGY+  G       LF
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLF-AAMPRRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             +      PD YS+  +L AL  +    ++    + M VR  +      Y  +IS+   
Sbjct: 93  RAIPR----PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHAN 143

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411
            G +  A       P E DA  W  +L+    +G+ + A  +     + +       VI 
Sbjct: 144 HGLVSLARHYFDLAP-EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWD-------VIS 195

Query: 412 ANVL-SGVGRWDEVAEVRKV 430
            N L SG  +W +++E R++
Sbjct: 196 WNALMSGYVQWGKMSEAREL 215


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 182/556 (32%), Positives = 304/556 (54%), Gaps = 5/556 (0%)

Query: 22  HARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           H   LKS     + + N LI  YS+   +  ++++ + +P  ++ S+ +++SA   S   
Sbjct: 151 HGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCR 210

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
                 + R      + +  T  S+   CA +    L GL +H+  LK  L    F  S 
Sbjct: 211 GEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQL-GLQIHAQLLKTGLVFDVFVSST 269

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           L+  Y +     NA+K FD +R+R+VV + A++  + QN    ++L++F  M   D    
Sbjct: 270 LIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPN 329

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
            +  +  L A A L A+    ++HG  V+SG   ++IVG  LI+ Y K+G +  +  VF 
Sbjct: 330 EFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVF- 388

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
            N+   + I WNAM+ GY+  G     L +F  +   G  P+  +F+ VL+A  +  L  
Sbjct: 389 SNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQ 448

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER-IAMAMPFEPDAAVWRALLS 379
           E   + +++  ++ +EPGLEHYTC+++ +GRAG L++AE  +      + D   WR LL+
Sbjct: 449 EGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLN 508

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              IH   ++  ++ + +I ++P+D   Y +++N+ +   +WD V ++RK+MK+R ++KE
Sbjct: 509 ACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKE 568

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SW++++   HVF++    H  +  I+ K+ +L+   + LGY P    +LH+V D +K
Sbjct: 569 PGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQK 628

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              L +HSEKLALA+GL+   P    +RI+KNLR+C DCH + K IS+   R I+VRD N
Sbjct: 629 EGYLSHHSEKLALAYGLMK-IPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDAN 687

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F  G CTC D W
Sbjct: 688 RFHHFREGLCTCNDHW 703



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 165/378 (43%), Gaps = 11/378 (2%)

Query: 19  RIVHA----RALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           + +HA    R   S  +D +  N+LI  YSK      + +LF+ +   N+VSW+AL+  +
Sbjct: 43  KTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGY 102

Query: 75  SNSPLSLNIFLSMLRHPTL--SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            +    L + L + R+     S  PN+     +   CA  S     G   H   LK  L 
Sbjct: 103 LHKGEVLEV-LGLFRNLVSLDSAYPNEYIFTIVLSCCAD-SGRVKEGKQCHGYLLKSGLL 160

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              +  +AL+H YSR    D+A ++ D +   DV  Y +++    ++    ++  V   M
Sbjct: 161 LHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRM 220

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
               V          L   A++  ++    IH   + +GL  +V V + LID YGK G V
Sbjct: 221 VDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEV 280

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +AR+ FD  L   N +AW A++  Y Q G     L LF  +E+    P+E++F AVL  
Sbjct: 281 LNARKQFD-GLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTF-AVLLN 338

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            C + +A      +    V    +  L     LI+   ++G ++ +  +   M    D  
Sbjct: 339 ACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNM-MNRDVI 397

Query: 373 VWRALLSFSAIHGKADMA 390
            W A++   + HG    A
Sbjct: 398 TWNAMICGYSHHGLGKQA 415


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 177/562 (31%), Positives = 306/562 (54%), Gaps = 19/562 (3%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           ++  AR L      R +  +N +++ Y++   +  + RLF+  P  ++ +WTA++S ++ 
Sbjct: 83  KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ 142

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + +   +  +F +M     +S+  N    A + +     +      +   +++       
Sbjct: 143 NGMLEEARRVFDAMPERNAVSW--NAMVAAYIQRRMMDEAKELFNMMPCRNVA------- 193

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + ++  Y++    + AK VFD + ++D V + AM+  ++Q     ++L +F +M 
Sbjct: 194 ---SWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 250

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
                      +  L   A++AA+E    +HG  + +G      VG  L+  Y K G + 
Sbjct: 251 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNME 310

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DAR  F+E +   + ++WN M+AGYA+ G     LE+F ++      PD+ + + VL A 
Sbjct: 311 DARNAFEE-MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAAC 369

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            ++GL  +   +   M   + +    EHYTC+I  +GRAGRL +A  +   MPFEPD+ +
Sbjct: 370 SHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTM 429

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL  S IH   ++     +++ ++ P +   YV+++N+ +  G+W +  ++R +M++
Sbjct: 430 WGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEE 489

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R V+K  G SWIEV+ KVH F AGD +H   E IY  L +L    ++ GYV   D +LH+
Sbjct: 490 RGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHD 549

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + EK   L YHSEKLA+A+G+++  P G+ +R++KNLR+C DCH +FKYIS +  R I
Sbjct: 550 VEEEEKEHMLKYHSEKLAVAYGILN-IPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLI 608

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD NR+H F  GSC+CGD W
Sbjct: 609 LLRDSNRFHHFRGGSCSCGDYW 630



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 13/217 (5%)

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
           SHA    +SL      L+        + ++  Y R    + A+ +F+   E DV+ + A+
Sbjct: 15  SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNAL 74

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           + G+ Q  ++ ++  +F  M   DV S    VSG  R       M + R +   A V   
Sbjct: 75  MSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARR----GDMVEARRLFDAAPV--- 127

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
            R+V   T ++ GY + G++ +ARRVFD  +   N+++WNAM+A Y Q+       ELF+
Sbjct: 128 -RDVFTWTAVVSGYAQNGMLEEARRVFDA-MPERNAVSWNAMVAAYIQRRMMDEAKELFN 185

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           ++  R  A    S+  +LT    AG+  E++   + M
Sbjct: 186 MMPCRNVA----SWNTMLTGYAQAGMLEEAKAVFDTM 218



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 154/377 (40%), Gaps = 66/377 (17%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D   YN +I++++   L+S +   F+  P  + VSW  +++A+  +           R  
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNG----------RVE 54

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
               L N RT   +                                 +AL+  Y ++   
Sbjct: 55  EARGLFNSRTEWDVISW------------------------------NALMSGYVQWGKM 84

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG-ALRA 210
             A+++FD +  RDVV +  M+ G+A+   +V++  +F      DV +    VSG A   
Sbjct: 85  SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 144

Query: 211 AAELA-----AMEQCRVIHGHAVVSG------LD-----------RNVIVGTGLIDGYGK 248
             E A     AM +   +  +A+V+       +D           RNV     ++ GY +
Sbjct: 145 MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQ 204

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
           AG++ +A+ VFD  +   ++++W AM+A Y+Q G     L+LF  +   G   +  +F  
Sbjct: 205 AGMLEEAKAVFD-TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFAC 263

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           VL+  C    A E    +    +R     G      L++   + G +EDA R A     E
Sbjct: 264 VLST-CADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA-RNAFEEMEE 321

Query: 369 PDAAVWRALLSFSAIHG 385
            D   W  +++  A HG
Sbjct: 322 RDVVSWNTMIAGYARHG 338


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 185/574 (32%), Positives = 315/574 (54%), Gaps = 16/574 (2%)

Query: 12  QNTSTDPRIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           +++ +D   VH   L + S  D  +   LI  YS    + Y+ ++F+      I  W AL
Sbjct: 90  RSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNAL 149

Query: 71  ISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTC----ASLSHAFLFGLSLH 123
             A +   +    L ++  M R   +    ++ T   + K C     +++H  + G  +H
Sbjct: 150 FRALTLAGHGEEVLGLYWKMNR---IGVESDRFTYTYVLKACVASECTVNH-LMKGKEIH 205

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
           +   +       +  + LV  Y+RF   D A  VF  +  R+VV + AMI  +A+N +  
Sbjct: 206 AHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAF 265

Query: 184 DSLSVFADM--RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
           ++L  F +M   + D       +   L+A A LAA+EQ ++IHG+ +  GLD  + V + 
Sbjct: 266 EALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISA 325

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           L+  YG+ G +   +RVFD  +   + ++WN++++ Y   G     +++F  +   G +P
Sbjct: 326 LVTMYGRCGKLEVGQRVFDR-MHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASP 384

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
              +F++VL A  + GL  E ++  E M   + ++P +EHY C++  +GRA RL++A ++
Sbjct: 385 TPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKM 444

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
              M  EP   VW +LL    IHG  ++A +  +RL  + P +   YV++A++ +    W
Sbjct: 445 VQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMW 504

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
           DEV  V+K+++ R ++K  GR W+EV+ K++ F++ D  +   E I+  L +L E+ +  
Sbjct: 505 DEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEK 564

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           GY+P    +L+ +   EK   +  HSEKLALAFGL++ + +G+ +RI KNLR+C DCH  
Sbjct: 565 GYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTS-KGEPIRITKNLRLCEDCHLF 623

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            K+IS+ +E+EI+VRDVNR+HRF NG C+CGD W
Sbjct: 624 TKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 187/552 (33%), Positives = 296/552 (53%), Gaps = 17/552 (3%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSM 87
           +D  +   ++  Y+K   +  +  +F+ +   ++V +TALI  ++   L   +L +F  M
Sbjct: 135 SDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDM 194

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           +        PN+ TLAS+  +C +L    + G  +H L +K  L       ++L+  YS+
Sbjct: 195 VGS---RIKPNEYTLASVLVSCGNLGD-LVNGKLIHGLVVKSGLESVVASQTSLLTMYSK 250

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
               +++ KVF+ +     V + + IVG  QN R   +LS+F +M    +    +  S  
Sbjct: 251 CNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSI 310

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A + LA +E    IH   V  G+D N  V   LI  YGK G V  AR VF E+L+ L+
Sbjct: 311 LHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVF-ESLTELD 369

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++ N M+  YAQ G     LELF  ++  G  P+  +F+++L A  NAGL  E  +   
Sbjct: 370 VVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFS 429

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE----PDAAVWRALLSFSAI 383
            ++  + +E   +HYTC+I  +GRA R E+A     AM  E    PD   WR LL+   I
Sbjct: 430 LIRNNHSIELTRDHYTCMIDLLGRAKRFEEA-----AMLIEEGKNPDVIQWRTLLNACKI 484

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           HG+ +MA K  K+++D  P D   ++++ N+ +  G+WD V E++   +D R++K    S
Sbjct: 485 HGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMS 544

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
           W+++  +VH F+AGD  H R  +I   L EL+E+   LGY P    +L ++ + +K  AL
Sbjct: 545 WVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISAL 604

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
           +YHSEKLA+AF L     +   +RI KNLR+C DCH   K++S +  R+I+ RD  R+H 
Sbjct: 605 YYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDAKRFHH 664

Query: 564 FLNGSCTCGDLW 575
           F  G C+C D W
Sbjct: 665 FKGGICSCKDYW 676



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 180/361 (49%), Gaps = 10/361 (2%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           L  Q   + + T  + +H   LKS        + LI  Y K ++++ + +LF+ +P+ +I
Sbjct: 7   LIAQFTNKKSLTTLKSLHTHILKSGSLFSFFGHKLIDGYIKCSVITEARKLFDEMPNRHI 66

Query: 65  VSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
           V+W ++IS+H     +  ++ ++ +ML       LP+  T +++FK  + +  +   G  
Sbjct: 67  VTWNSMISSHVSRGKTKEAIELYDNMLFEGV---LPDAYTFSAIFKAFSEMGVS-REGQK 122

Query: 122 LHSLSLKLSLH-DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            H L++ L       F  + +V  Y++F    +A+ VFD + ++DVV + A+IVG+ Q  
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRG 182

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              ++L VF DM  S +    Y ++  L +   L  +   ++IHG  V SGL+  V   T
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQT 242

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            L+  Y K  +V D+ +VF+ +L+  + + W + + G  Q G +   L +F  +     +
Sbjct: 243 SLLTMYSKCNMVEDSIKVFN-SLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSIS 301

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
           P+ ++F ++L A C++    E+ + I  + V+  ++        LI   G+ G +E A  
Sbjct: 302 PNHFTFSSILHA-CSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARS 360

Query: 361 I 361
           +
Sbjct: 361 V 361



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 7/285 (2%)

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
           SLH+  LK S     F G  L+  Y +      A+K+FDE+  R +V + +MI       
Sbjct: 22  SLHTHILK-SGSLFSFFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRG 80

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD-RNVIVG 239
           +  +++ ++ +M    V    Y  S   +A +E+    + +  HG AVV G +  +  V 
Sbjct: 81  KTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVA 140

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           TG++D Y K G + DAR VFD  L   + + + A++ GY Q+G     LE+F  +     
Sbjct: 141 TGIVDMYAKFGKMKDARFVFDRVLDK-DVVLFTALIVGYNQRGLDGEALEVFEDMVGSRI 199

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
            P+EY+  +VL +  N G      K I  + V+  LE  +   T L++   +   +ED+ 
Sbjct: 200 KPNEYTLASVLVSCGNLGDLVNG-KLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSI 258

Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINP 402
           ++  ++ +      W + +     +G+ ++A  M + +I   I+P
Sbjct: 259 KVFNSLAY-ASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISP 302


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 308/572 (53%), Gaps = 24/572 (4%)

Query: 21  VHARALKSS---QADRSIYNNLITNYSKSNL-----LSYSLRLFNHIPSPNIVSWTALI- 71
           +HA A+K+    QA  +    L+T  ++        L+Y+ ++F+ IP P  V W   + 
Sbjct: 47  LHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVIWYNTLL 106

Query: 72  -------SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
                       +  +  +F+ M+        P+  T  SL K CAS + A   G   H 
Sbjct: 107 RGYARGGGGGGGAEEAARVFVRMMEE---GVAPDTYTFVSLLKACAS-ARAGEEGRQAHG 162

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
           +++K    +  +    L++ Y+       A+ +FD +    VV Y AMI    ++S   +
Sbjct: 163 VAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGE 222

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L +F +M++  +  T   +   L A A L A+E  R IH +     LD  V V T LID
Sbjct: 223 ALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALID 282

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G + DA  VF +++   +  AW+ MM  YA  G     + +F  ++ +G  PD+ 
Sbjct: 283 MYAKCGSLEDAIGVF-QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDV 341

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +FL VL A  ++G+  E  ++ + M+  Y +  G++HY C+   + R+G+LE A +    
Sbjct: 342 TFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDE 400

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           +P +P A +WR LLS  A HG  DM  ++ +R+++++      YVI +N+ +  GRW+E+
Sbjct: 401 LPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEM 460

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
             VRK+M ++ V K  G S IE+   VH F AGD  H  +++    + E++E+ + +GYV
Sbjct: 461 NMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYV 520

Query: 485 PVWDEMLH-NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           P    + H  +G+ EK  +L YHSEKLA++FGL++ AP G TLRIVKNLR+C DCH   K
Sbjct: 521 PNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAP-GTTLRIVKNLRVCPDCHSMAK 579

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            +S V  R I++RD+NR+H F +G C+CGD W
Sbjct: 580 LVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 190/587 (32%), Positives = 300/587 (51%), Gaps = 35/587 (5%)

Query: 19   RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
            R +H  AL++     +  +   L+  Y           +F+ +    +  W AL++ ++ 
Sbjct: 554  REIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYAR 613

Query: 77   SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
            +     +L +F+ M+      F PN  T AS+   C      F     +H   +K     
Sbjct: 614  NEFDDQALRLFVEMISES--EFCPNATTFASVLPACVRCK-VFSDKEGIHGYIVKRGFGK 670

Query: 134  KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM- 192
              +  +AL+  YSR    + +K +F  + +RD+V +  MI G     R  D+L++  +M 
Sbjct: 671  DKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQ 730

Query: 193  -RSSDVGSTMY----------------CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
             R  + GS  +                 +   L   A LAA+ + + IH +AV   L  +
Sbjct: 731  RRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMD 790

Query: 236  VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
            V VG+ L+D Y K G ++ A RVFD+ + + N I WN ++  Y   G     LELF ++ 
Sbjct: 791  VAVGSALVDMYAKCGCLNLASRVFDQ-MPIRNVITWNVLIMAYGMHGKGEEALELFRIMT 849

Query: 296  MRG------FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
              G        P+E +++A+  A  ++G+  E       MK  + +EP  +HY CL+  +
Sbjct: 850  AGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLL 909

Query: 350  GRAGRLEDAERIAMAMPFEPDAA-VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
            GR+GR+++A  +   MP   +    W +LL    IH   +      K L  + P   S Y
Sbjct: 910  GRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHY 969

Query: 409  VIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIY 468
            V+++N+ S  G WD+   VRK MK+  VRKE G SWIE   +VH FL+GD  H ++++++
Sbjct: 970  VLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELH 1029

Query: 469  TKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRI 528
              L  L +   + GYVP    +LHNV D EK   L  HSE+LA+AFGL++  P G T+R+
Sbjct: 1030 EYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLN-TPPGTTIRV 1088

Query: 529  VKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             KNLR+C DCH + K IS++V+REI++RDV R+H F NG+C+CGD W
Sbjct: 1089 AKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 171/379 (45%), Gaps = 17/379 (4%)

Query: 21  VHARALKSSQADRS---IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           +HA   K   A  S   + N+L+  Y K   L+ + ++F+ IP  + VSW ++I+     
Sbjct: 352 IHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRF 411

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
               LSL++F  ML     +  P   TL S+   C+ +      G  +H+ +L+ +   +
Sbjct: 412 EEWELSLHLFRLMLSE---NVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLR-NGDLR 467

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +  +ALV  Y+R    ++AK +F     +D+V +  +I   +QN R  ++L     M  
Sbjct: 468 TYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIV 527

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVS 253
             V      ++  L A ++L  +   R IH +A+ +G L  N  VGT L+D Y       
Sbjct: 528 DGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPK 587

Query: 254 DARRVFDENLSVLNSIA-WNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLT 311
             R VFD    V  ++A WNA++AGYA+       L LF  ++    F P+  +F +VL 
Sbjct: 588 KGRLVFDG--VVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLP 645

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A     +  + E  I    V+            L+    R GR+E ++ I   M  + D 
Sbjct: 646 ACVRCKVFSDKEG-IHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMN-KRDI 703

Query: 372 AVWRALLSFSAIHGKADMA 390
             W  +++   + G+ D A
Sbjct: 704 VSWNTMITGCIVCGRYDDA 722



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 13/209 (6%)

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG--LDR 234
             +S   D++S +A M ++      +     L+AAA +  +   + IH H    G     
Sbjct: 306 THSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPS 365

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           +V V   L++ YGK G ++ AR+VFD+ +   + ++WN+M+A   +  +    L LF L+
Sbjct: 366 SVAVANSLVNMYGKCGDLTAARQVFDD-IPDRDHVSWNSMIATLCRFEEWELSLHLFRLM 424

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYT--CLISAMGR 351
                 P  ++ ++V  A C+    G     + +    Y L  G L  YT   L++   R
Sbjct: 425 LSENVDPTSFTLVSVAHA-CSHVRGGVR---LGKQVHAYTLRNGDLRTYTNNALVTMYAR 480

Query: 352 AGRLEDAERIAMAMPFE-PDAAVWRALLS 379
            GR+ DA+  A+   F+  D   W  ++S
Sbjct: 481 LGRVNDAK--ALFGVFDGKDLVSWNTVIS 507


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 308/572 (53%), Gaps = 24/572 (4%)

Query: 21  VHARALKSS---QADRSIYNNLITNYSKSNL-----LSYSLRLFNHIPSPNIVSWTALI- 71
           +HA A+K+    QA  +    L+T  ++        L+Y+ ++F+ IP P  V W   + 
Sbjct: 47  LHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLL 106

Query: 72  -------SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
                       +  +  +F+ M+        P+  T  SL K CAS + A   G   H 
Sbjct: 107 RGYARGGGGGGGAEEAARVFVRMMEE---GVAPDTYTFVSLLKACAS-ARAGEEGRQAHG 162

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
           +++K    +  +    L++ Y+       A+ +FD +    VV Y AMI    ++S   +
Sbjct: 163 VAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGE 222

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           +L +F +M++  +  T   +   L A A L A+E  R IH +     LD  V V T LID
Sbjct: 223 ALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALID 282

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G + DA  VF +++   +  AW+ MM  YA  G     + +F  ++ +G  PD+ 
Sbjct: 283 MYAKCGSLEDAIGVF-QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDV 341

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +FL VL A  ++G+  E  ++ + M+  Y +  G++HY C+   + R+G+LE A +    
Sbjct: 342 TFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDE 400

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           +P +P A +WR LLS  A HG  DM  ++ +R+++++      YVI +N+ +  GRW+E+
Sbjct: 401 LPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEM 460

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
             VRK+M ++ V K  G S IE+   VH F AGD  H  +++    + E++E+ + +GYV
Sbjct: 461 NMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYV 520

Query: 485 PVWDEMLH-NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           P    + H  +G+ EK  +L YHSEKLA++FGL++ AP G TLRIVKNLR+C DCH   K
Sbjct: 521 PNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAP-GTTLRIVKNLRVCPDCHSMAK 579

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            +S V  R I++RD+NR+H F +G C+CGD W
Sbjct: 580 LVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 308/585 (52%), Gaps = 34/585 (5%)

Query: 19  RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN--IVSWTALISAH 74
           R +HA  LK S   A+  + + L+  Y+    +  + R+F+ +P  +  +  W A++  +
Sbjct: 291 REMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGY 350

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + + +   +L +F  M        +P++ T+A +   CA  S  F    ++H   LK  +
Sbjct: 351 AQAGMDEEALELFARM--EAEAGVVPSETTIAGVLPACAR-SETFAGKEAVHGYVLKRGM 407

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
            D PF  +AL+  Y+R    + A+ +F  I  RDVV +  +I G      + D+  +  +
Sbjct: 408 ADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVRE 467

Query: 192 M----RSSDVGSTMYCVSGA---------------LRAAAELAAMEQCRVIHGHAVVSGL 232
           M    R +D  +T   ++G                L   A LAA  + + IHG+A+   L
Sbjct: 468 MQQQGRFTD-ATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHAL 526

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
           D ++ VG+ L+D Y K G ++ +R VFD  L   N I WN ++  Y   G     + LF 
Sbjct: 527 DSDIAVGSALVDMYAKCGCLALSRAVFDR-LPKRNVITWNVLIMAYGMHGLGDEAIALFD 585

Query: 293 LLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
            + M   A P+E +F+A L A  ++G+     +    MK  + ++P  + + C +  +GR
Sbjct: 586 RMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGR 645

Query: 352 AGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           AGRL++A  I  +M P E   + W + L    +H    +     +RL  + P + S YV+
Sbjct: 646 AGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVL 705

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
           + N+ S  G W++ +EVR  M+ R V KE G SWIE+ G +H F+AG+  H  +  ++  
Sbjct: 706 LCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAH 765

Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
           +  L E     GY P    +LH++ + EK   L YHSEKLA+AFGL+   P G T+R+ K
Sbjct: 766 MDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLR-TPPGATIRVAK 824

Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           NLR+C DCHE+ K+ISR+V REIV+RDV R+H F++G+C+CGD W
Sbjct: 825 NLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 175/394 (44%), Gaps = 34/394 (8%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML-- 88
           ++ N L+T Y++   L+ +L LFN +PS + V++ +LI+A         +L+    ML  
Sbjct: 97  AVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLE 156

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL--HDKPFCGSALVHFYS 146
            HP  SF     TL S+   C+ L+     G   H+ +LK      D+ F  +AL+  Y+
Sbjct: 157 GHPLSSF-----TLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYA 211

Query: 147 RFRSPDNAKKVFDEIRERD-----VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201
           R    D+A+ +F  +   D     VV +  M+    Q+ R  +++ V  DM +  V    
Sbjct: 212 RLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDG 271

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVV-SGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
              + AL A ++L  +   R +H + +  S L  N  V + L+D Y     V  ARRVFD
Sbjct: 272 ITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFD 331

Query: 261 ENLSVLNSIA-WNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCNAGL 318
                   +  WNAM+ GYAQ G     LELF  +E   G  P E +   VL A      
Sbjct: 332 MVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPA------ 385

Query: 319 AGESEKWIERMKVR-YKLEPGLEH----YTCLISAMGRAGRLEDAERIAMAMPFEP-DAA 372
              SE +  +  V  Y L+ G+         L+    R G +E A  I  A+  EP D  
Sbjct: 386 CARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAI--EPRDVV 443

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
            W  L++   + G    A ++ + +     + D+
Sbjct: 444 SWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDA 477


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 184/565 (32%), Positives = 302/565 (53%), Gaps = 17/565 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
           VH   +K+   AD  + + +I  Y+K   L+ ++ LF  +P PN++ + A+I+       
Sbjct: 228 VHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEA 287

Query: 77  ------SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
                 S  +L+++  M    +    P++ T +S+ + C +L+  F FG  +H   LK S
Sbjct: 288 AVGKEVSREALSLYSEM---QSRGMQPSEFTFSSILRAC-NLAGEFGFGKQIHGQVLKHS 343

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
            HD  + GSAL+  YS     ++  + F  + ++D+V + +MI G  QN     +L +F 
Sbjct: 344 FHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQ 403

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           +     +   ++ +S  + A A LA       I   A+  G +R   +G   I    ++G
Sbjct: 404 ESICYGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSG 463

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V    R F E +   + ++W+A+++ +AQ G     L +F+ +     AP+E +FL VL
Sbjct: 464 DVDAVTRRFQE-MESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVL 522

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           TA  + GL  +  ++ E MK  Y L P ++H TC++  +GRAGRL DAE       F  D
Sbjct: 523 TACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDD 582

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           A VWR+LL+   IHG  +    +  +++D+ P   ++YVI+ N+    G     ++ R +
Sbjct: 583 AVVWRSLLASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDL 642

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK+R V+KE G SWIE++  VH F+AGD+ H  +  IY KLAE++ + E+L         
Sbjct: 643 MKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIEKLANTDNASTG 702

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
              +   E+   +  HSEK+A+AFG++   P+   +R++KNLR+CRDCH + K IS    
Sbjct: 703 SDGISSSEQ-NLVGCHSEKIAVAFGMIH-LPQSAPIRVMKNLRVCRDCHSTMKLISGSEN 760

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REI++RD  R+H F  GSC+CGD W
Sbjct: 761 REIILRDGIRFHHFRGGSCSCGDYW 785



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 172/357 (48%), Gaps = 21/357 (5%)

Query: 37  NNLITNYSKSNLLS--YSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           N+L+  Y +  + +  ++ RL + +P  N VS+  LIS++S + L      +  R    +
Sbjct: 38  NSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYNLLISSYSRAGLPGRALETFARARAAA 97

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
            L   R   +      S +     G ++H++++   L +  F  ++L   Y+       A
Sbjct: 98  GLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEA 157

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           ++VFD   E D V + +++ G+ +     ++L VF+ M    +G   + +   ++  A  
Sbjct: 158 RRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASG 217

Query: 215 AAMEQ--CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           + + +     +HG  V +GLD ++ + + +ID Y K G +++A  +F +++   N I +N
Sbjct: 218 SDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALF-KSVPDPNVIVFN 276

Query: 273 AMMAGYAQQGDQSTV--------LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE--S 322
           AM+AG+ +  D++ V        L L+  ++ RG  P E++F ++L A CN  LAGE   
Sbjct: 277 AMIAGFCR--DEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRA-CN--LAGEFGF 331

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            K I    +++         + LI     +G +ED  R   ++P + D   W +++S
Sbjct: 332 GKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLP-KQDIVTWTSMIS 387


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 183/536 (34%), Positives = 284/536 (52%), Gaps = 9/536 (1%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHPTLSFLPNQ 99
           YSK   +  +  LF  I  P++VS+ A+IS ++    +  S+ +F  +L         N 
Sbjct: 252 YSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKV---NS 308

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
            ++  L        H  L    +H    K  +       +AL   YSR    ++A+ +FD
Sbjct: 309 SSIVGLIPVFFPFGHLHL-TRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFD 367

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
           E  E+ +  + AMI G+AQN     ++S+F +M+  +V      V+  L A A+L A+  
Sbjct: 368 ESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSL 427

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            + +H        + N+ V T LID Y K G +++A+R+F   +   N++ WNAM++GY 
Sbjct: 428 GKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSM-MPEKNAVTWNAMISGYG 486

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
             G     L LF+ +     +P   +FL+VL A  +AGL  E ++    M   +  EP  
Sbjct: 487 LHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLP 546

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           EHY C++  +GRAG L+ A      MP EP   VW ALL    IH  A++A     +L +
Sbjct: 547 EHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFE 606

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDR 459
           ++P +   YV+++N+ S    + E A VR V+K R++ K  G + IEV   +H+F +GD+
Sbjct: 607 LDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQ 666

Query: 460 MHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSG 519
            H +   IY  L +L  +    G+       LH+V + EK   +  HSEKLA+AFGL++ 
Sbjct: 667 SHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITS 726

Query: 520 APRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            P G  +RI+KNLR+C DCH + K+IS++ ER IVVRD NR+H F +G C+CGD W
Sbjct: 727 EP-GTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 177/407 (43%), Gaps = 34/407 (8%)

Query: 35  IYNNLITNYSKSNLLSY------SLRLFNHIPSPNIVSWTALISAHS--NSPLSLNIFLS 86
           ++N+L+T    ++ LS+      +  LF+ IP+P++  +  LI A S  NSP S     +
Sbjct: 38  LHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYT 97

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
            LR  T    P+  T A +    +SL       L LH+ S+        F GSA+V  Y 
Sbjct: 98  HLRKST-PLEPDNFTYAFVISGASSLGLG----LLLHAHSIVAGFGSDLFVGSAIVACYF 152

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +F     A+KVFD + ERD V +  M+ G  +NS   +++ +F DM    +G     V+ 
Sbjct: 153 KFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAA 212

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L   AEL  +     I   A+  G   +  V TGL   Y K G +  AR +F + +   
Sbjct: 213 VLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQ-IGQP 271

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + +++NAM++GY    +  + + LF  L + G   +  S + ++      G      + I
Sbjct: 272 DLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHL-HLTRCI 330

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
                +  +       T L +   R   +E A R+      E   A W A++S  A +G 
Sbjct: 331 HGFCTKSGVVSNSSVSTALTTVYSRLNEIESA-RLLFDESSEKSLASWNAMISGYAQNGL 389

Query: 387 ADMA----SKMGKRLIDINPYDDSAYVIVANVLSG--------VGRW 421
            + A     +M K  +  NP      V V ++LS         +G+W
Sbjct: 390 TEKAISLFQEMQKCEVRPNP------VTVTSILSACAQLGALSLGKW 430



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 7/165 (4%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTLSF 95
           L T YS+ N +  +  LF+     ++ SW A+IS ++ + L+   +++F  M +      
Sbjct: 349 LTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQK---CEV 405

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            PN  T+ S+   CA L  A   G  +H L  + S     F  +AL+  Y++  S   A+
Sbjct: 406 RPNPVTVTSILSACAQLG-ALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQ 464

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           ++F  + E++ V + AMI G+  +    ++L++F +M  S V  T
Sbjct: 465 RLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPT 509



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNI 83
           +S +++  +   LI  Y+K   ++ + RLF+ +P  N V+W A+IS    H     +LN+
Sbjct: 438 ESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNL 497

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
           F  ML H  +S  P   T  S+   C   SHA L
Sbjct: 498 FNEML-HSRVS--PTGVTFLSVLYAC---SHAGL 525


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 200/624 (32%), Positives = 334/624 (53%), Gaps = 59/624 (9%)

Query: 5   LNQQPQP-QNTSTDPRIVHA-RALKSSQADRSIYNNLITNYSKS---------------- 46
           +++ P P  N  ++P+I+      K+ +  + ++  +IT+++                  
Sbjct: 54  MSRTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFP 113

Query: 47  NLLSYSLRLFNHIPSPNIVSWTALISAHSNS--PL-SLNIFLSMLRHPTLSFLPNQRTLA 103
             L+Y+  +F+H+ +P    + +LI A S+S  PL +L ++ +ML+       P+  T  
Sbjct: 114 TFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQS---GLKPDHMTYP 170

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
            + K C   S  + FGL +H+  +K       +  S+L+H Y+  +    AK++F+    
Sbjct: 171 FVIKACNESSVTW-FGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSA 229

Query: 164 RDVVCYGAMIVGFAQ-----NSRLV--------------------------DSLSVFADM 192
           RDVV + AMI G+ +     ++R+V                          ++L++F  M
Sbjct: 230 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQM 289

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R+  V  T   V   L A A L A+++   +H +   + ++ N IVGT L+D Y K G +
Sbjct: 290 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 349

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           S A +VF+  +   + +AWN ++AG A  G+     +LF  ++  G  P++ +F+A+L+A
Sbjct: 350 SLATQVFNA-MESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSA 408

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AG+  E +K ++ M   Y +EP +EHY C+I  + RAG LE+A  +   MP EP+ +
Sbjct: 409 CSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPS 468

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
              ALL    IHG  ++   +GKRLI++ P     Y++++N+ +   +WD+  +VR +MK
Sbjct: 469 ALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMK 528

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECER-LGYVPVWDEML 491
              + K  G S IE+KG VH F+AGD  H  +  IY KL E+    +  +GY      +L
Sbjct: 529 VNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVL 588

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            ++ + +K  AL  HSEKLA+A+GL+    + + +RIVKNLR+CRDCH   K IS+V  R
Sbjct: 589 LDMEEEDKEHALAVHSEKLAIAYGLLHLDSK-EAIRIVKNLRVCRDCHHVIKLISKVYGR 647

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRD NR+H F +G C+C D W
Sbjct: 648 EIIVRDRNRFHHFEDGECSCLDFW 671


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/545 (32%), Positives = 300/545 (55%), Gaps = 9/545 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPLSLNI--FLSMLRHP 91
           + +NL   YSK  LLS + R+F+ +P  + V+WTA+I  ++ N  L   +  F  M R  
Sbjct: 159 VASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREG 218

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            +    +Q    S+      L   +L   S+H    K     +    +AL+  Y++    
Sbjct: 219 LVG--ADQHVFCSVLSASGGLKDGWL-SKSIHCCVTKAGFELEVAVRNALIDMYAKSMDV 275

Query: 152 DNAKKVFD-EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
           ++A +V   +    +VV   +MI G+ +   + ++L ++ ++R   V    +  S  ++ 
Sbjct: 276 ESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG 335

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A  A +EQ   +H   + + L R+  VG+ L+D YGK G++S + ++F+E +     IA
Sbjct: 336 CAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNE-IEYRTDIA 394

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WNA++  +AQ G     ++ F  +   G  P+  +F+++LTA  +AGL  E  K+   MK
Sbjct: 395 WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMK 454

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             + +EP  EHY+C+I   GRAGRL++A +    MP +P+A  W +LL    + G  ++ 
Sbjct: 455 EAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELG 514

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
               + L+ + P +   +V ++ + + +G+W++V  VRK+M+D R++K  G SW++   K
Sbjct: 515 EVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKK 574

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
            HVF + D  H + +DIY KL EL    +  GY+P    +  N+ D  K   L YHSE++
Sbjct: 575 THVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERI 634

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AF L+S  P  K + + KNLRIC DCH +FK+I +V  R+I+VRD +R+H F+NG C+
Sbjct: 635 AVAFALIS-MPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCS 693

Query: 571 CGDLW 575
           CGD W
Sbjct: 694 CGDYW 698



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 188/420 (44%), Gaps = 9/420 (2%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R++HAR + S  A  S +  N+LIT YS    L+ +LRLF  +P  N VSWT L+S  S 
Sbjct: 40  RLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQ 99

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + +  +   +          P  R   S     A+   A L G  LH + ++L    + F
Sbjct: 100 NLMHADALAAFAAMRRAGVAPT-RFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELF 158

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSS 195
             S L   YS+      A +VFD++ ++D V + AMI G+A+N  L  ++  F DM R  
Sbjct: 159 VASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREG 218

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            VG+  +     L A+  L      + IH     +G +  V V   LID Y K+  V  A
Sbjct: 219 LVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESA 278

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            RV   +    N ++  +M+ GY +       L ++  L  +G  P+E++F +++     
Sbjct: 279 SRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAM 338

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             L  +  + +    ++  L       + L+   G+ G +  + ++   + +  D A W 
Sbjct: 339 QALLEQGAQ-LHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIA-WN 396

Query: 376 ALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           A+++  A HG    A +   R+I   I P +  A+V +    S  G  DE  +    MK+
Sbjct: 397 AVINVFAQHGHGREAIQAFDRMIYSGIRP-NHIAFVSLLTACSHAGLVDEGLKYFYSMKE 455



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 136/292 (46%), Gaps = 22/292 (7%)

Query: 102 LASLFKTCASLSHAFLFGLSLHS-LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           LASL ++C         G  LH+ L L  +     F  + L+  YS      +A ++F  
Sbjct: 23  LASLLQSCGRAGD-LRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAA 81

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           +  R+ V +  ++ G +QN    D+L+ FA MR + V  T + +S A RAAA L A    
Sbjct: 82  MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 141

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
             +H   V  G D  + V + L D Y K G++S+A RVFD+ +   +++AW AM+ GYA+
Sbjct: 142 AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQ-MPQKDAVAWTAMIDGYAK 200

Query: 281 QGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAGLAGESEKWIER------MKVRY 333
            G     +  F  ++  G    D++ F +VL+A       G  + W+ +       K  +
Sbjct: 201 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA-----SGGLKDGWLSKSIHCCVTKAGF 255

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +LE  + +   LI    ++  +E A R+      + D   W  +   S I G
Sbjct: 256 ELEVAVRN--ALIDMYAKSMDVESASRV-----LKIDPGGWNVVSGTSMIDG 300


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 178/563 (31%), Positives = 297/563 (52%), Gaps = 14/563 (2%)

Query: 20  IVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--S 75
           +V AR +     +R +  +N ++  Y++  LL  + +LF+ +   +  SWTA+++ +   
Sbjct: 136 LVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKK 195

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRT---LASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           + P    +  S+++      +PN R      S+    A+       G  +H   ++  L 
Sbjct: 196 DQPEEALVLYSLMQR-----VPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLD 250

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                 S+L+  Y +    D A+ +FD+I E+DVV + +MI  + ++SR  +  S+F+++
Sbjct: 251 SDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSEL 310

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             S      Y  +G L A A+L   E  + +HG+    G D      + L+D Y K G +
Sbjct: 311 VGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNI 370

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A+ V D      + ++W +++ G AQ G     L+ F LL   G  PD  +F+ VL+A
Sbjct: 371 ESAKHVVD-GCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  +  ++   +  +++L    +HYTCL+  + R+GR E  + +   MP +P   
Sbjct: 430 CTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKF 489

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W ++L   + +G  D+A +  + L  I P +   YV +AN+ +  G+W+E  ++RK M+
Sbjct: 490 LWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQ 549

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           +  V K  G SW E+K K HVF+A D  H     I   L EL ++ +  GYVP    +LH
Sbjct: 550 EIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLH 609

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V D +K E L YHSEKLA+AF ++S    G  +++ KNLR C DCH + K+IS + +R+
Sbjct: 610 DVEDEQKEENLVYHSEKLAVAFAILS-TEEGTAIKVFKNLRSCVDCHGAIKFISNITKRK 668

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I VRD  R+H F NG C+CGD W
Sbjct: 669 ITVRDSTRFHCFENGQCSCGDYW 691



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 37/309 (11%)

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           L+  Y++  S  +A+KVFDE+  RD+  +  M+ G+A+   L ++  +F +M   D  S 
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSW 185

Query: 201 MYCVSGALRAAAELAAM----------------------------EQC----RVIHGHAV 228
              V+G ++      A+                             +C    + IHGH V
Sbjct: 186 TAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIV 245

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
            +GLD + ++ + L+D YGK G + +AR +FD+ +   + ++W +M+  Y +        
Sbjct: 246 RAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDK-IVEKDVVSWTSMIDRYFKSSRWREGF 304

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
            LF  L      P+EY+F  VL A C      E  K +     R   +P     + L+  
Sbjct: 305 SLFSELVGSCERPNEYTFAGVLNA-CADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDM 363

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
             + G +E A+ +    P +PD   W +L+   A +G+ D A K    L+      D  +
Sbjct: 364 YTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD--H 420

Query: 409 VIVANVLSG 417
           V   NVLS 
Sbjct: 421 VTFVNVLSA 429



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 7/120 (5%)

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R+    ++ YC    ++  ++  A+E+ + +H H   SG    +++   L+  Y K G +
Sbjct: 79  RAKKPPASTYC--NLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSL 136

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DAR+VFDE +   +  +WN M+ GYA+ G      +LF  +  +    D YS+ A++T 
Sbjct: 137 VDARKVFDE-MPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEK----DSYSWTAMVTG 191


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 189/565 (33%), Positives = 315/565 (55%), Gaps = 19/565 (3%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   +K+  ++  +++N L+  YSK   L+ +  +F  +    IVSWT++I+A+   
Sbjct: 316 RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVRE 375

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            L   ++ +F  M    +    P+  T+ S+   CA  S +   G  +HS  +K  +   
Sbjct: 376 GLYSDAIGLFDEM---QSKGVRPDIYTVTSIVHACAC-SSSLDKGRDVHSYVIKNGMGSN 431

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-- 192
               +AL++ Y++  S + A+ VF +I  +D+V +  MI G++QN    ++L +F DM  
Sbjct: 432 LPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK 491

Query: 193 --RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
             +  D+  TM CV   L A A LAA+++ R IHGH +  G   ++ V   L+D Y K G
Sbjct: 492 QFKPDDI--TMACV---LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCG 546

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
           ++  A+ +FD  +   + I+W  M+AGY   G  +  +  F+ + + G  PDE SF A+L
Sbjct: 547 LLVLAQLLFDM-IPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAIL 605

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  ++GL  E  K+   M+    +EP LEHY C++  + R G L  A +   +MP +PD
Sbjct: 606 NACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPD 665

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             +W  LLS   IH    +A K+ + + ++ P +   YV++ANV +   +W+EV ++RK 
Sbjct: 666 TTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKR 725

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           M+ R  ++  G SWIEV GK ++F+AG+  H + + I   L++L  + +   Y  ++  +
Sbjct: 726 MQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYV 785

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L N  D EK      HSEK A+AFG+++  P G+T+R+ KN R+C DCHE  K++S+  +
Sbjct: 786 LINEDDMEKEMIQCGHSEKSAMAFGILN-LPPGRTVRVSKNRRVCGDCHEMGKFMSKTTK 844

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
            EIV+RD NR+H F +G C+C D +
Sbjct: 845 MEIVLRDSNRFHHFKDGLCSCRDAF 869



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 203/411 (49%), Gaps = 19/411 (4%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   LK    ++ ++ N+LI  Y K   +  +  LF+ +  P++VSW ++I+    +  
Sbjct: 217 VHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGF 276

Query: 80  S---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           S   L IF+ ML    L    +  TL S+   CA++ +  L G +LH   +K    ++  
Sbjct: 277 SGNGLEIFIQML---ILGVEVDLTTLVSVLVACANIGNLSL-GRALHGFGVKACFSEEVV 332

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             + L+  YS+  + + A +VF ++ +  +V + ++I  + +     D++ +F +M+S  
Sbjct: 333 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKG 392

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V   +Y V+  + A A  +++++ R +H + + +G+  N+ V   LI+ Y K G V +AR
Sbjct: 393 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 452

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM-RGFAPDEYSFLAVLTALCN 315
            VF + + V + ++WN M+ GY+Q    +  LELF  L+M + F PD+ +   VL A   
Sbjct: 453 LVFSK-IPVKDIVSWNTMIGGYSQNLLPNEALELF--LDMQKQFKPDDITMACVLPAC-- 507

Query: 316 AGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           AGLA  +  + I    +R      L     L+    + G L  A+ +   +P + D   W
Sbjct: 508 AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISW 566

Query: 375 RALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYVIVANVLSGVGRWDE 423
             +++   +HG  + A       R+  I P D+S++  + N  S  G  +E
Sbjct: 567 TVMIAGYGMHGFGNEAISTFNEMRIAGIEP-DESSFSAILNACSHSGLLNE 616



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 12/265 (4%)

Query: 61  SPNIVSWTALISAHSNSPLSLNIFLSM--------LRHPTLSFLPNQRTLASLFKTCASL 112
           SP+  + T  ++ + N+   +N F  M        L   + S+     +  S+ + CA  
Sbjct: 50  SPSFTNTTHSVTQNQNA--KINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAE- 106

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
             +   G  +HS+ +   +      G+ LV  Y         +K+FD+I    V  +  +
Sbjct: 107 KKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLL 166

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           +  +A+     +S+S+F  M+   V    Y  +  L+  A L  +++C+ +HG+ +  G 
Sbjct: 167 MSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGF 226

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
             N  V   LI  Y K G V  A  +FDE LS  + ++WN+M+ G    G     LE+F 
Sbjct: 227 GSNTAVVNSLIAAYFKFGGVESAHNLFDE-LSEPDVVSWNSMINGCVVNGFSGNGLEIFI 285

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAG 317
            + + G   D  + ++VL A  N G
Sbjct: 286 QMLILGVEVDLTTLVSVLVACANIG 310



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 98/217 (45%), Gaps = 9/217 (4%)

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           A I  F +   L +++ +    +S ++G   YC    L+  AE  ++E  + +H   + +
Sbjct: 66  AKINKFCEMGDLRNAIELLTKSKSYELGLNSYC--SVLQLCAEKKSLEDGKRVHSVIISN 123

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS--IAWNAMMAGYAQQGDQSTVL 288
           G+  +  +G  L+  Y   G +   R++FD+   ++N     WN +M+ YA+ G+    +
Sbjct: 124 GISVDEALGAKLVFMYVNCGDLVQGRKIFDK---IMNDKVFLWNLLMSEYAKIGNFRESV 180

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
            LF  ++  G   + Y+F  VL      G   E ++ +    ++            LI+A
Sbjct: 181 SLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKR-VHGYVLKLGFGSNTAVVNSLIAA 239

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
             + G +E A  +   +  EPD   W ++++   ++G
Sbjct: 240 YFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 275


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 310/563 (55%), Gaps = 14/563 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R  H  A+KS  Q    + N ++  Y +   +  ++++F ++   +I ++ ++I    N 
Sbjct: 128 RQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMI----NG 183

Query: 78  PLSLNIFLSMLRHPTLSFLP-----NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            L L  F   +R    S +      +  +  ++   CAS +   L G  +H+ +LK  L 
Sbjct: 184 FLDLGEFDGSIR-IVRSMVGEVEQWDHVSYVAVLGHCAS-TKELLLGCQVHAQALKRRLE 241

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              + GSALV  Y +     +A   F+ + E++VV + A++  + QN R  D+L +F D+
Sbjct: 242 QNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDL 301

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
               V    +  + AL + A LAA++    +   A+ +G    + V   L++ Y K+G +
Sbjct: 302 EIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSI 361

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DA RVF  ++   + ++WN+++ GYA  G     + +FH + +    P   +F+ VL A
Sbjct: 362 HDAWRVF-LSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLA 420

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
               GL  E   ++  M     ++PG EHYTC++  + RAGRL++AE+  ++     D  
Sbjct: 421 CAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVV 480

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            W++LLS   ++    +  ++ ++++ + P D   YV+++N+ +   RWD V +VRK+M+
Sbjct: 481 AWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMR 540

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           +R VRKE G SWI+V  +VHVF + D+ H+    I  KL EL+ + + +GYVP    +LH
Sbjct: 541 ERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITIKLKELIGQIKVIGYVPNCAVVLH 600

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V   +K E L YHSEK+ALAFGL+  +P G+T+RI+KNLRIC DCH + K IS V  R+
Sbjct: 601 DVEAEQKEEHLMYHSEKMALAFGLIH-SPEGETIRIMKNLRICDDCHVAIKLISVVTRRK 659

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IVVRD  R+H   +G C+C D W
Sbjct: 660 IVVRDTVRFHCIDDGVCSCDDYW 682



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 182/377 (48%), Gaps = 23/377 (6%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           + +HA+ ++++  D   +N+LI  Y K   L  + ++F+ +PS N VS   L+S ++++ 
Sbjct: 31  KAIHAQMIRAAHFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAG 90

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
              +  L++L+    S   N+  L++     A +  ++  G   H  ++K  L + P+  
Sbjct: 91  RHSDA-LALLKAADFSL--NEYVLSTALSAAAHVR-SYGMGRQCHGYAVKSGLQEHPYVC 146

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +A++H Y +    ++A KVF+ +   D+  + +MI GF        S+ +   M    VG
Sbjct: 147 NAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSM----VG 202

Query: 199 S-------TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
                   +   V G   +  EL  +  C+V H  A+   L++NV VG+ L+D YGK   
Sbjct: 203 EVEQWDHVSYVAVLGHCASTKEL--LLGCQV-HAQALKRRLEQNVYVGSALVDMYGKCDC 259

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
             DA   F E L   N ++W A+M  Y Q       L+LF  LE+ G  P+E+++   L 
Sbjct: 260 ARDAHSAF-EVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALN 318

Query: 312 ALCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +   AGLA  ++   +    ++      L     L++   ++G + DA R+ ++MP+  D
Sbjct: 319 SC--AGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWR-D 375

Query: 371 AAVWRALLSFSAIHGKA 387
              W +++   A HG A
Sbjct: 376 VVSWNSVIIGYAHHGLA 392


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/545 (32%), Positives = 300/545 (55%), Gaps = 9/545 (1%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPLSLNI--FLSMLRHP 91
           + +NL   YSK  LLS + R+F+ +P  + V+WTA+I  ++ N  L   +  F  M R  
Sbjct: 308 VASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREG 367

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            +    +Q    S+      L   +L   S+H    K     +    +AL+  Y++    
Sbjct: 368 LVG--ADQHVFCSVLSASGGLKDGWL-SKSIHCCVTKAGFELEVAVRNALIDMYAKSMDV 424

Query: 152 DNAKKVFD-EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
           ++A +V   +    +VV   +MI G+ +   + ++L ++ ++R   V    +  S  ++ 
Sbjct: 425 ESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKG 484

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A  A +EQ   +H   + + L R+  VG+ L+D YGK G++S + ++F+E +     IA
Sbjct: 485 CAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNE-IEYRTDIA 543

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WNA++  +AQ G     ++ F  +   G  P+  +F+++LTA  +AGL  E  K+   MK
Sbjct: 544 WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMK 603

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             + +EP  EHY+C+I   GRAGRL++A +    MP +P+A  W +LL    + G  ++ 
Sbjct: 604 EAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELG 663

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
               + L+ + P +   +V ++ + + +G+W++V  VRK+M+D R++K  G SW++   K
Sbjct: 664 EVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKK 723

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
            HVF + D  H + +DIY KL EL    +  GY+P    +  N+ D  K   L YHSE++
Sbjct: 724 THVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERI 783

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AF L+S  P  K + + KNLRIC DCH +FK+I +V  R+I+VRD +R+H F+NG C+
Sbjct: 784 AVAFALIS-MPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCS 842

Query: 571 CGDLW 575
           CGD W
Sbjct: 843 CGDYW 847



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 183/420 (43%), Gaps = 10/420 (2%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R++HAR + S  A  S +  N+LIT YS    L+ +LRLF  +P  N VSWT L+S  S 
Sbjct: 190 RLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQ 249

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           + +  +   +          P +   A      A+ +          + S  +    + F
Sbjct: 250 NLMHADALAAFAAMRRAGVAPTR--FALSSAARAAAALGAPLRARSCTASASVGFDTELF 307

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSS 195
             S L   YS+      A +VFD++ ++D V + AMI G+A+N  L  ++  F DM R  
Sbjct: 308 VASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREG 367

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            VG+  +     L A+  L      + IH     +G +  V V   LID Y K+  V  A
Sbjct: 368 LVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESA 427

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            RV   +    N ++  +M+ GY +       L ++  L  +G  P+E++F +++     
Sbjct: 428 SRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAM 487

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             L  +  + +    ++  L       + L+   G+ G +  + ++   + +  D A W 
Sbjct: 488 QALLEQGAQ-LHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIA-WN 545

Query: 376 ALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           A+++  A HG    A +   R+I   I P +  A+V +    S  G  DE  +    MK+
Sbjct: 546 AVINVFAQHGHGREAIQAFDRMIYSGIRP-NHIAFVSLLTACSHAGLVDEGLKYFYSMKE 604



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 179/425 (42%), Gaps = 73/425 (17%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--- 73
           R++HAR + S  A  S +  N+LIT YS    L+ +LRLF  +P  N VSWT L+S    
Sbjct: 40  RLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQ 99

Query: 74  ---------------------------------------------HSNSPLSLNIFLSML 88
                                                        HS   L +  +   L
Sbjct: 100 NLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHCHSGPTLMVKYWGQRL 159

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS-LSLKLSLHDKPFCGSALVHFYSR 147
             P          LASL ++C         G  LH+ L L  +     F  + L+  YS 
Sbjct: 160 WRPPAPAAATTVHLASLLQSCGRAGD-LRRGRLLHARLVLSGAAAASTFLANHLITMYSH 218

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
                +A ++F  +  R+ V +  ++ G +QN    D+L+ FA MR + V  T + +S A
Sbjct: 219 CADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSA 278

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
            RAAA L A  + R     A V G D  + V + L D Y K G++S+A RVFD+ +   +
Sbjct: 279 ARAAAALGAPLRARSCTASASV-GFDTELFVASNLADMYSKCGLLSEACRVFDQ-MPQKD 336

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAGLAGESEKWI 326
           ++AW AM+ GYA+ G     +  F  ++  G    D++ F +VL+A       G  + W+
Sbjct: 337 AVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA-----SGGLKDGWL 391

Query: 327 ER------MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
            +       K  ++LE  + +   LI    ++  +E A R+      + D   W  +   
Sbjct: 392 SKSIHCCVTKAGFELEVAVRN--ALIDMYAKSMDVESASRV-----LKIDPGGWNVVSGT 444

Query: 381 SAIHG 385
           S I G
Sbjct: 445 SMIDG 449


>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g13770, mitochondrial-like
           [Glycine max]
          Length = 600

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 197/565 (34%), Positives = 315/565 (55%), Gaps = 25/565 (4%)

Query: 21  VHARALKSSQAD-RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
           VHA  +K+       ++  LI  Y+K + L  +  + N +P  N+VSWTA+ISA+S    
Sbjct: 48  VHAHTIKTHYLPCVYLWTRLIVFYTKCDSLGDARHVLNEMPERNVVSWTAMISAYSQRGY 107

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGL--SLHSLSLKLSLHD 133
           +  +L+I + +LR  T S   N+ T    F T     + FL F L  ++HSL +KL+   
Sbjct: 108 ASQALSILVQILRSGTES---NEFT----FATMPYFMYRFLGFCLREAIHSLIIKLNFKA 160

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             + GS+L+  Y++      A+ +F+ + ERDVV   A+I G+AQ   L + L +F  ++
Sbjct: 161 HVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSCTAIISGYAQLD-LDEELELFLRLQ 219

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              + S     +  L A + LAA++  + +H H + S +   VI+   LID Y K G ++
Sbjct: 220 REGMXSNYVTYTSVLTALSGLAALDHGKQVHNHLLCSEVPSFVILQNSLIDMYSKCGNLT 279

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTA 312
            ARR+FD  +     I+WNAM+ GY++ G++  VLELF+L+ +     PD  + LAVL+ 
Sbjct: 280 YARRIFD-TMRERTVISWNAMLVGYSKHGERREVLELFNLMRDENKVKPDSVTVLAVLSG 338

Query: 313 LCNAGLAGESEK----WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
            C+ G  G+ +K    + +    +  ++P  + Y C++  +GRAGR+E+A      +PFE
Sbjct: 339 -CSHG--GQEDKGMDIFYDMTSGKISVQPDTKRYGCVVDLLGRAGRVEEAFEFIKKIPFE 395

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
           P AA+   LL   ++H    +   +G RL++  P +   YVI++N+ +  GRW++V  +R
Sbjct: 396 PSAAICGCLLGACSVHSNLGIGEFVGHRLLEFEPENAGNYVILSNLYASAGRWEDVTSLR 455

Query: 429 KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
            +M  + V KE GRS IEV   +  F   D  H R E++  K  EL+   +  GY P   
Sbjct: 456 NLMLKKAVTKEPGRSLIEVDQVLQTFHPSDCSHPRREEVSAKXQELLVRFKEAGYFPDLS 515

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
            +LH+V + +K + L  HSEKLAL+FGL++  P    + ++KNLRIC DCH   KYIS++
Sbjct: 516 CVLHDVDEEQKEKILLSHSEKLALSFGLIA-TPESVLICVIKNLRICVDCHNFAKYISKI 574

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGD 573
             RE+ +RD N +H  +   C+CGD
Sbjct: 575 YSREVSLRDKNWFHGIVGEKCSCGD 599



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 144/321 (44%), Gaps = 8/321 (2%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           N +   ++   C S   AF  G  +H+ ++K       +  + L+ FY++  S  +A+ V
Sbjct: 25  NLQDYNTVLNECVS-KRAFKEGQRVHAHTIKTHYLPCVYLWTRLIVFYTKCDSLGDARHV 83

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
            +E+ ER+VV + AMI  ++Q      +LS+   +  S   S  +  +            
Sbjct: 84  LNEMPERNVVSWTAMISAYSQRGYASQALSILVQILRSGTESNEFTFATMPYFMYRFLGF 143

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
                IH   +      +V VG+ L+D Y K G + +AR +F E L   + ++  A+++G
Sbjct: 144 CLREAIHSLIIKLNFKAHVYVGSSLLDMYAKDGKIHEARGIF-ECLPERDVVSCTAIISG 202

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLE 336
           YAQ  D    LELF  L+  G   +  ++ +VLTAL  +GLA  +  K +    +  ++ 
Sbjct: 203 YAQL-DLDEELELFLRLQREGMXSNYVTYTSVLTAL--SGLAALDHGKQVHNHLLCSEVP 259

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
             +     LI    + G L  A RI   M  E     W A+L   + HG+     ++   
Sbjct: 260 SFVILQNSLIDMYSKCGNLTYARRIFDTMR-ERTVISWNAMLVGYSKHGERREVLELFNL 318

Query: 397 LIDINPYDDSAYVIVANVLSG 417
           + D N     +  ++A VLSG
Sbjct: 319 MRDENKVKPDSVTVLA-VLSG 338


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 309/602 (51%), Gaps = 47/602 (7%)

Query: 13  NTSTDPRIVHARALKSSQADRSIYN----NLITNYSKSNLLSYSLRLFNHIPS--PNIVS 66
           N+  + R VHA+ +K++ A  SI       L+  ++ S    Y+ ++F  +    P    
Sbjct: 39  NSPFELRQVHAQIIKTN-APLSILPLTRVGLVCAFTPS--FHYAQQIFKCVEKQKPETFV 95

Query: 67  WTALISA--HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
           W + + A    +SP+   +    LR       P+  T +S+ + C +L      G  LH 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQ--YDVCPDTFTCSSVLRACLNLLD-LSNGRILHG 152

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG-------------- 170
           +  K+      +  + +VH Y+       A+ +F+++ +RDVV +               
Sbjct: 153 VVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEG 212

Query: 171 -----------------AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
                            +MI G+ Q  +  +++ +FA M  + V      V   L A A+
Sbjct: 213 AYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 272

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
           L A++    IH ++   G  RNV +   LID Y K G + +A +VF+E +     ++W+A
Sbjct: 273 LGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEE-MEERTVVSWSA 331

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           M+ G A  G     L LF  +   G  P+  +F+ +L A  + GL  E  ++   M   Y
Sbjct: 332 MIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDY 391

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            + P +EHY C++  + RAG L +A    + MP +P+  VW ALL    +H   +MA + 
Sbjct: 392 GIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEA 451

Query: 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHV 453
            K L++++P +D  YV+++N+ +  GRW++ A VRK MKDR+V+K  G S I V G VH 
Sbjct: 452 IKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHE 511

Query: 454 FLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALA 513
           F+AG+  H  TE I+ +  EL+EE    GYVP    +L ++ + EK + +  HSEKLAL 
Sbjct: 512 FVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALV 571

Query: 514 FGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
           FGL++  P    +RI+KNLRIC DCH +FK IS +V REIVVRD NR+H F + SC+C D
Sbjct: 572 FGLMN-TPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRD 630

Query: 574 LW 575
            W
Sbjct: 631 YW 632


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 307/559 (54%), Gaps = 11/559 (1%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH +  +   ++D  + N L+  Y+K   +  +  +F  +   NIVSWT++IS +  + L
Sbjct: 191 VHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGL 250

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L IF  M +    +  P+   L S+ +    +      G S+H   +K+ L  +P 
Sbjct: 251 PMEALRIFGQMRQR---NVKPDWIALVSVLRAYTDVED-LEQGKSIHGCVVKMGLEFEPD 306

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
              +L   Y++      A+  FD++   +V+ + AMI G+A+N    +++ +F +M S +
Sbjct: 307 LLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKN 366

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           + +    V  A+ A A++ +++  + +  +   +    +V V T LID + K G V  AR
Sbjct: 367 IRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAR 426

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFD  L   + + W+AM+ GY   G     ++LF+ ++  G  P++ +F+ +LTA  ++
Sbjct: 427 EVFDRTLDK-DVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHS 485

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E  +    MK  Y +E   +HY C++  +GR+G L +A      MP EP  +VW A
Sbjct: 486 GLVEEGWELFHSMKY-YGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGA 544

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    I+    +     ++L  ++P++   YV ++N+ +    WD VA+VR +M+++ +
Sbjct: 545 LLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGL 604

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            K+ G S IE+ GK+  F  GD+ H R ++I+ +L  L    +  G++P  + +LH++  
Sbjct: 605 SKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQ 664

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK E L  HSE+LA+A+GL+S AP G TLRI KNLR C +CH + K IS++V REIVVR
Sbjct: 665 EEKEETLCNHSERLAIAYGLISTAP-GTTLRITKNLRACINCHSATKLISKLVNREIVVR 723

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F NG C+C D W
Sbjct: 724 DANRFHHFKNGVCSCRDYW 742



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 154/342 (45%), Gaps = 4/342 (1%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKT 108
           + Y+ ++F+  P P++  W A+I  +S+     +      R       P+  TL  + K 
Sbjct: 119 IGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKA 178

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
           C+ +      G  +H    +L      F  + LV  Y++    + A+ VF+ + +R++V 
Sbjct: 179 CSGVP-VLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVS 237

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           + +MI G+ QN   +++L +F  MR  +V      +   LRA  ++  +EQ + IHG  V
Sbjct: 238 WTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVV 297

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
             GL+    +   L   Y K G V  AR  FD+ + + N + WNAM++GYA+ G  +  +
Sbjct: 298 KMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQ-MEIPNVMMWNAMISGYAKNGYTNEAV 356

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
            LF  +  +    D  +  + + A    G + +  KW+     + +    +   T LI  
Sbjct: 357 GLFQEMISKNIRTDSITVRSAILACAQVG-SLDLAKWMGDYINKTEYRNDVFVNTALIDM 415

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             + G + D  R       + D  VW A++    +HG+   A
Sbjct: 416 FAKCGSV-DLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDA 456


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/564 (31%), Positives = 309/564 (54%), Gaps = 15/564 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +++H + +K    +D  I   L+  Y+    L  +  LF  +   N V WT++IS +  +
Sbjct: 99  KVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKN 158

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                  L   +     F P++ T+A+L   CA L    + G+ LHS   ++ +      
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGV-GMKLHSHIREMDMKICAVL 217

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF------AD 191
           GSALV+ Y++      A++VFD++ ++DV  + A+I G+ +N+R  ++L +F      ++
Sbjct: 218 GSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSN 277

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR ++V      +   + A A+L  +E  R +H +   +    +V +   LID + K G 
Sbjct: 278 MRPNEV-----TILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGD 332

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  A+R+FD ++S  + I+WN+M+ G A  G     L  FHL++     PDE +F+ VLT
Sbjct: 333 IDAAKRIFD-SMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLT 391

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  +AGL  E +K    ++  Y +    EHY C++  + RAG L +A      MP +PD 
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           A+W ++L    ++   ++  +  + L+++ P +D  Y++++N+ +    W+EV +VR++M
Sbjct: 452 AIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELM 511

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
            ++ ++K  G S + +    H FLAGD  H    +I   L ++ E+ + +GYV    E+L
Sbjct: 512 NEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVL 571

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            N+ D +K E++  HSEKLAL +GL+     G+ + I+KNLR+C DCH   K +S++ +R
Sbjct: 572 LNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIV-ILKNLRVCSDCHTLIKLVSKIYQR 630

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           +I +RD NR+H F +GSC+C D W
Sbjct: 631 QITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 181/383 (47%), Gaps = 17/383 (4%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASL 105
           + Y+  +F H    ++++W +++ A  NS +   +L  +  ML       +P++ T  SL
Sbjct: 28  VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS--RNVPDRFTFPSL 85

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K CA L   F  G  LH   +K  LH   +  + L++ Y+      +A+ +F+ +  R+
Sbjct: 86  LKGCALLLE-FKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRN 144

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
            V + +MI G+ +N    ++L ++  M           ++  + A AEL  +     +H 
Sbjct: 145 KVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHS 204

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           H     +    ++G+ L++ Y K G +  AR+VFD+ LS  +  AW+A++ GY +    +
Sbjct: 205 HIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQ-LSDKDVYAWSALIFGYVKNNRST 263

Query: 286 TVLELFHLLEMRG---FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
             L+LF   E+ G     P+E + LAV++A    G   E+ +W+     R +    +   
Sbjct: 264 EALQLFR--EVAGGSNMRPNEVTILAVISACAQLG-DLETGRWVHDYITRTQKGHSVSLN 320

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH--GKADMASKMGKRLIDI 400
             LI    + G ++ A+RI  +M ++ D   W ++++  A+H  G+  +A     +  D+
Sbjct: 321 NSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGLALHGLGREALAQFHLMQTTDL 379

Query: 401 NPYDDSAYVIVANVLSGVGRWDE 423
            P D+  ++ V    S  G   E
Sbjct: 380 QP-DEITFIGVLTACSHAGLVQE 401


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 186/555 (33%), Positives = 310/555 (55%), Gaps = 23/555 (4%)

Query: 28  SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIF 84
           SS  D   Y  LI  Y     +  + +LF+ IP  ++VSW A+IS +    N   +L +F
Sbjct: 150 SSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELF 209

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS----- 139
             M+    +   P++ T+ ++   CA  S +   G  +HS      ++D  F  +     
Sbjct: 210 KEMMMMTNVR--PDESTMVTVVSACAQ-SDSIELGRHVHSW-----INDHGFASNLKIVN 261

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVG 198
           AL+  YS+F   + A ++FD +  +DV+ +  +I G+   +   ++L +F +M RS +  
Sbjct: 262 ALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 321

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVI-VGTGLIDGYGKAGIVSDA 255
           + +  +S  L A A L A++  R IH +    + G+  NV  + T LID Y K G +  A
Sbjct: 322 NDVTMLS-ILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAA 380

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           ++VFD ++S  +   WNAM++G+A  G  +   ++F  + M G  PD+ +F+ +L+A  +
Sbjct: 381 QQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSH 440

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           +G+          M   Y++ P LEHY C+I  +G +G  ++AE +   MP EPD  +W 
Sbjct: 441 SGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWC 500

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           +LL    IHG  ++     K+LI I P +  +YV+++N+ +  GRW+EVA++R ++ D+ 
Sbjct: 501 SLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKG 560

Query: 436 VRKE-GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
           ++K+  G S IE+   VH F+ GD++H +  +IY  L E+    E  G+VP   E+L  +
Sbjct: 561 MKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEM 620

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            +  +  AL +HSEKLA+AFGL+S  P G  L I+KNLR+C++CHE+ K IS++ +REI+
Sbjct: 621 EEEWREGALRHHSEKLAIAFGLISTKP-GTKLTIMKNLRVCKNCHEATKLISKIYKREII 679

Query: 555 VRDVNRYHRFLNGSC 569
            RD  R+  F +G C
Sbjct: 680 ARDRTRFXHFRDGVC 694



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 206/463 (44%), Gaps = 73/463 (15%)

Query: 15  STDPRIVHARALKSSQADRSIYNNLITNYSKSNLLS------------YSLRLFNHIPSP 62
           S+  R +HA+ +K+      ++N   TNY+ S LL             Y++ +F+ I  P
Sbjct: 1   SSSVRXIHAQMIKTG-----LHN---TNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEP 52

Query: 63  NIVSWTALISAH--SNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119
           N++ W  +   H  S+ P+S L ++L M+   +L  LP+  T   L K+CA  S     G
Sbjct: 53  NLLIWNTMFRGHALSSDPVSALKLYLVMI---SLGLLPDSYTFPFLLKSCAK-SKIRKEG 108

Query: 120 LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
             +H   LKL      +  ++L+  Y++    ++A+KVFD    RDVV Y A+I G+   
Sbjct: 109 QQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSR 168

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSG--------------------------------A 207
             +  +  +F ++   DV S    +SG                                 
Sbjct: 169 GYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTV 228

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           + A A+  ++E  R +H      G   N+ +   LID Y K G V  A  +FD  L   +
Sbjct: 229 VSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFD-GLWNKD 287

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            I+WN ++ GY         L LF  +   G  P++ + L++L A  + G A +  +WI 
Sbjct: 288 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG-AIDIGRWI- 345

Query: 328 RMKVRYKLEPGLEHY----TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
            + +  KL+  + +     T LI    + G ++ A+++  +       + W A++S  A+
Sbjct: 346 HVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAM 405

Query: 384 HGKA----DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
           HG+A    D+ S+M  R+  I P DD  +V + +  S  G  D
Sbjct: 406 HGRANAAFDIFSRM--RMNGIEP-DDITFVGLLSACSHSGMLD 445



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 116/285 (40%), Gaps = 37/285 (12%)

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA------WNAM 274
           R IH   + +GL       + L++      +VS     F   +SV ++I       WN M
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLE----FCVVSPHFDGFPYAISVFDTIQEPNLLIWNTM 60

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
             G+A   D  + L+L+ ++   G  PD Y+F  +L +   + +  E ++ I    ++  
Sbjct: 61  FRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQ-IHGHVLKLG 119

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM- 393
            +  +  +T LIS   + GRLEDA ++   +    D   + AL++     G  + A K+ 
Sbjct: 120 FDLDIYVHTSLISMYAQNGRLEDARKV-FDISSHRDVVSYTALIAGYVSRGYIESAQKLF 178

Query: 394 ----GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV------------R 437
               GK ++  N    S YV   N    +  + E+  +  V  D                
Sbjct: 179 DEIPGKDVVSWNAM-ISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDS 237

Query: 438 KEGGR---SWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE 479
            E GR   SWI   G    F +  ++     D+Y+K  E+   CE
Sbjct: 238 IELGRHVHSWINDHG----FASNLKIVNALIDLYSKFGEVETACE 278


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 190/586 (32%), Positives = 302/586 (51%), Gaps = 34/586 (5%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA+ +++  + D  +   L+ + SK + + Y+ R+F +  +PN+  +TALI    +S  
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            L       R    S LP+   +AS+ K C S   A   G  +HS +LKL          
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGS-QLALREGREVHSRALKLGFSSNRLVRL 186

Query: 140 ALVHFYSRFRSPDNAKKVFDE------------------------------IRERDVVCY 169
            ++  Y +     +A++VF+E                              +R +D VC+
Sbjct: 187 RIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
            AMI GF +N     +L  F  M+  +V    + +   L A ++L A+E  R +H +   
Sbjct: 247 TAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
             ++ N+ VG  LI+ Y + G + +A+ VFDE +   + I +N M++G +  G     +E
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDE-MKDRDVITYNTMISGLSMNGKSRQAIE 365

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
           LF ++  R   P   +F+ VL A  + GL     +    M   Y++EP +EHY C++  +
Sbjct: 366 LFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLL 425

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409
           GR GRLE+A  +   M   PD  +   LLS   +H   ++  ++ K L D    D   YV
Sbjct: 426 GRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYV 485

Query: 410 IVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYT 469
           ++++V +  G+W E A+VR  MK+  ++KE G S IEV  ++H FL GD  H + E IY 
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYE 545

Query: 470 KLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIV 529
           KL EL       GY P  + +L ++ D EK  AL  HSE+LA+ +GL+S  P    +R++
Sbjct: 546 KLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEP-CTMIRVM 604

Query: 530 KNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           KNLR+C DCH + K I+++  R+IVVRD NR+H F NG+C+CGD W
Sbjct: 605 KNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 166/377 (44%), Gaps = 45/377 (11%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           +Q+ + SL +    ++      L +H+  ++      PF    L+   S+  + D A ++
Sbjct: 48  DQKQIISLLQRSRHINQV----LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI 103

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           F      +V  Y A+I GF  +   ++++ +++ M    +    Y ++  L+A     A+
Sbjct: 104 FQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLAL 163

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE---------------- 261
            + R +H  A+  G   N +V   +++ YGK G + DARRVF+E                
Sbjct: 164 REGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYS 223

Query: 262 -------------NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
                         +   +++ W AM+ G+ +  + +  LE F  ++     P+E++ + 
Sbjct: 224 DQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVC 283

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           VL+A    G A E  +W+     ++++E  L     LI+   R G +++A+ +   M  +
Sbjct: 284 VLSACSQLG-ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-D 341

Query: 369 PDAAVWRALLSFSAIHGKADMASKM-----GKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            D   +  ++S  +++GK+  A ++     G+RL   N      +V V N  S  G  D 
Sbjct: 342 RDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTN----VTFVGVLNACSHGGLVDF 397

Query: 424 VAEVRKVM-KDRRVRKE 439
             E+   M +D RV  +
Sbjct: 398 GFEIFHSMARDYRVEPQ 414


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 170/439 (38%), Positives = 257/439 (58%), Gaps = 2/439 (0%)

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           C +A++   S     D A+++FD + +RD V + AM+ G+ +  R  ++L +F +M+ + 
Sbjct: 192 CVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAG 251

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V  +   +   L A A++ A+E+   +H +    G+  +V +GT L+D Y K G+V+ + 
Sbjct: 252 VAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSM 311

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF E +   N   W + ++G A  G     LELF  +E  G  P+  +F+AVL     A
Sbjct: 312 EVF-ETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVA 370

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E     + MK ++K+EP LEHY C++   GRAGRL+DA     +MP EP   VW A
Sbjct: 371 GLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGA 430

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+ S IH   D+      +L +I   +D+A+V+++N+ +    W  V++VR +MK + V
Sbjct: 431 LLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGV 490

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S IEV GKVH F  G + H R +DI T LAE+       GY     E+L ++ +
Sbjct: 491 KKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEE 550

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK  A+  HSEKLALAFGL++  P    +RIVKNLR+C+DCH+  K IS+V +REIV+R
Sbjct: 551 EEKEGAISLHSEKLALAFGLIT-LPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREIVMR 609

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F +G+C+C D W
Sbjct: 610 DRNRFHHFKHGACSCRDYW 628



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 16/229 (6%)

Query: 55  LFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           LF+ +P  + V+W A+++ +     S  +L +F  M +        ++ TL S+   CA 
Sbjct: 212 LFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQK---AGVAVSEVTLVSVLTACAQ 268

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
           +  A   G+ +HS      +      G+ALV  YS+      + +VF+ +RER++  + +
Sbjct: 269 MG-ALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTS 327

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG-----H 226
            + G A N    + L +F  M S+ +          LR  +    +E+ R         H
Sbjct: 328 ALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKH 387

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            V   L+        ++D YG+AG + DA    +      +   W A++
Sbjct: 388 KVEPWLEHY----GCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALL 432


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 174/553 (31%), Positives = 305/553 (55%), Gaps = 25/553 (4%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N++I  YSK   ++ +  +F  +P  N++SW A+I+ ++ +       +   +   +   
Sbjct: 112 NSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGF 171

Query: 97  PNQRTLASLFKTCASLS--------HAFLF-GLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
            ++ T  S  K C+ L         HAFL  G  L+S++  ++         AL+  Y +
Sbjct: 172 LDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVA--------GALIDLYVK 223

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
                 A++VF  I E+ V+ + A+I+G+AQ   L +S+ +F  +R S +    + +S  
Sbjct: 224 CGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSM 283

Query: 208 LRAAAELAAMEQCRVIHGHA--VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
           +   A+ A ++Q + +H  A  V SG+D  + V   ++D Y K G++++A R+F E +  
Sbjct: 284 MGVFADFALVQQGKQMHAFAIKVPSGVD--ISVCNSILDMYLKCGMINEAERLFSE-MPA 340

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            N I+W  M+ GY + G     + LF  +++    PD+ ++LAVL    ++GL  + +++
Sbjct: 341 RNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEY 400

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
             R+   + ++  +EHY C++  +GRAGRL++A+ +  +MP E +  +W+ LLS   +HG
Sbjct: 401 FSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHG 460

Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445
             ++  ++G  L+ ++  +   YV+++N+ +  G W E   +R+++K ++++KE GRSW+
Sbjct: 461 DLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWV 520

Query: 446 EVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC-ERLGYVPVWDEMLHNVGDREKREALW 504
           E+  +VH F  GD  H  TE I+  L E+     E LGYV      LH+V +  K + L 
Sbjct: 521 EIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLR 580

Query: 505 YHSEKLALAFGLVSGAPRG--KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562
            HSEKLA+   LV G      K +R+ KNLR+C DCHE  K +S+++    VVRD NR+H
Sbjct: 581 VHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFH 640

Query: 563 RFLNGSCTCGDLW 575
           RF +G C+C D W
Sbjct: 641 RFEDGLCSCRDYW 653



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 175/387 (45%), Gaps = 15/387 (3%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D  + N+LI  Y K   L  +  +F+ +   N+VSWTAL+  H  +   L   L   +  
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                PN  T ++  K C  L+     G  +H + +K         G++++  YS+    
Sbjct: 66  LSGVKPNDFTFSTNLKACGLLN-GLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRI 124

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM--YCVSGALR 209
           + A  +F+ +  R+++ + AMI G+        +L +F  M+  +VG  +  +  +  L+
Sbjct: 125 NEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQ--EVGGFLDEFTFTSTLK 182

Query: 210 AAAELAAMEQCRVIHGHAVVSGL--DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           A ++L A+++   IH   +  G     N  V   LID Y K G +  ARRVF  ++   +
Sbjct: 183 ACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFS-HIEEKH 241

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            I+W A++ GYAQ+G+ +  +ELF  L       D +   +++    +  L  + +   +
Sbjct: 242 VISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGK---Q 298

Query: 328 RMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
                 K+  G++   C  ++    + G + +AER+   MP   +   W  +++    HG
Sbjct: 299 MHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMP-ARNVISWTVMITGYGKHG 357

Query: 386 KADMASKMGKRL-IDINPYDDSAYVIV 411
               A ++   + +D    DD  Y+ V
Sbjct: 358 LGKEAIRLFDEMQLDSTEPDDVTYLAV 384



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 3/175 (1%)

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           G   ++++   LI  YGK G +  A  VFD  L   N ++W A+M G+ Q G+    L L
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLK-RNVVSWTALMCGHIQNGNPLESLLL 60

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           F  + + G  P++++F   L A C      +  + I  + V+   +        +I    
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKA-CGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYS 119

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           + GR+ +A  +   MP   +   W A+++   + G  + A  + +++ ++  + D
Sbjct: 120 KCGRINEAACMFEVMPVR-NLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLD 173



 Score = 45.4 bits (106), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+K  S  D S+ N+++  Y K  +++ + RLF+ +P+ N++SWT +I+ +    L
Sbjct: 299 MHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGL 358

Query: 80  S 80
            
Sbjct: 359 G 359


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/573 (31%), Positives = 315/573 (54%), Gaps = 18/573 (3%)

Query: 14  TSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           +S   R  HA+ ++   + D      LI  YSK +L+  + +  + +   +++     I 
Sbjct: 65  SSMGGRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDEMLVKSLILXNTRIG 124

Query: 73  AHSNSP---LSLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           A + +     +L + + M R  T    P N+ T++S+   CA    A L  + LH+ S+K
Sbjct: 125 ALTQNAEDRKALKLLIRMQREVT----PFNEFTISSVLCNCA-FKCAILECMQLHAFSIK 179

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
            ++    F  +AL+H Y++  S  +A ++F+ + E++ V + +M+ G+ QN    ++L +
Sbjct: 180 AAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLL 239

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           F + +        + +S A+ A A LA + + + +H  +  SG   N+ V + LID Y K
Sbjct: 240 FHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAK 299

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G + +A  VF+  + V + + WNAM++G+A+       + LF  ++ RGF PD+ ++++
Sbjct: 300 CGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDDVTYVS 359

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           VL A  + GL  E +K+ + M  ++ L P + HY+C+I  +GRAG ++ A  +   M F 
Sbjct: 360 VLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQKAYDLIGRMSFN 419

Query: 369 PDAAVWRALLSFSA-------IHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
             +++W ++   S        I+G  + A    K L ++ P +   ++++AN+ +   + 
Sbjct: 420 ATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEMEPNNAGNHILLANIYAANKKS 479

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
           DEVA  RK++++  VRKE G SWIE+K K+H F  G+R H + +D Y KL  L+ E ++L
Sbjct: 480 DEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDNYAKLDNLVVELKKL 539

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
            Y    +  LH+V +  K   L +HSEKLA+ FGLV   P    +RI+KNLRIC DCH  
Sbjct: 540 NYKVDTNNDLHDVEESRKHMLLGHHSEKLAITFGLVC-LPTEIPIRIIKNLRICGDCHTF 598

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
            K +S+   REI+VRD NR+H F +G C+CG+ 
Sbjct: 599 MKLVSKFASREIIVRDTNRFHHFKDGLCSCGEF 631


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/564 (32%), Positives = 303/564 (53%), Gaps = 11/564 (1%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           + R VHAR + +  +    +   L+  Y++   L  +  + + +P  N+VSWTA+IS +S
Sbjct: 53  EGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNVVSWTAMISGYS 112

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL-SLHSLSLKLSL 131
            +     + ++F+ MLR       PN+ TLAS+  +C          +  +H+ ++K + 
Sbjct: 113 QNERPAEAWDLFIMMLRAGCE---PNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNF 169

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F GS+L+  Y+R  +   A++VFD +  RDVV Y  ++ G+ +     ++L++F  
Sbjct: 170 ELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQ 229

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           + +  +       S  L A + L++M+  + +HG  +   L   + +   LID Y K G 
Sbjct: 230 LYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGK 289

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  +RRVFD N+   + ++WNAM+ GY + G    V++LF  +      PD  + LAVL 
Sbjct: 290 LLYSRRVFD-NMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFM-CDKVKPDSVTLLAVLL 347

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
              + GL  E     + +          +HY C+I  +GR+G+LE A  +   MPF+P  
Sbjct: 348 GYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTR 407

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           A+W +LL    +H    +   + ++L DI P +   YVI++N+ +    W +V  +RK+M
Sbjct: 408 AIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARMWKDVFRLRKLM 467

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
             + V KE GRSW+ +   +H F + +R H R EDI  K+ E+    +  G+VP    +L
Sbjct: 468 LKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAIKAAGFVPDLSCVL 527

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H+V D +K   L  HSEKLA+ FGL+S  P   T++++KNLRIC DCH   K++S+V  R
Sbjct: 528 HDVDDEQKERMLLGHSEKLAITFGLMS-TPSDLTIQVMKNLRICVDCHNFAKFVSKVYGR 586

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI +RD NR+H    G+CTCGD W
Sbjct: 587 EISLRDKNRFHLITEGACTCGDYW 610


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/560 (31%), Positives = 303/560 (54%), Gaps = 7/560 (1%)

Query: 19  RIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H R +KS   +   I + L+++Y +      +L LF+ +P  ++VSW +LIS  S  
Sbjct: 58  RALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRR 117

Query: 78  PLSLNIFLSML--RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              L I L +L      +   PN+ T+  +   CA +      G  +H +++K  +  + 
Sbjct: 118 A-DLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGE-LDVGKCIHGIAVKSGMLLEV 175

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              ++L++ Y +    + A  +F+ +  + +V + +M+            +  F  MR +
Sbjct: 176 KVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRA 235

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            + S    V   L A   L   +    +HG+ +  GLD N+ + T L+D Y K G +SD+
Sbjct: 236 GINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDS 295

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VF   ++  +++AW AM++ YA  G     +E F L+   G  PD  +F  +L+A  +
Sbjct: 296 CKVFGGMINP-DAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSH 354

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           +GL  E + + + M   Y +E  +EHY+C++  +GR+G L DA ++  +MP EP++ VW 
Sbjct: 355 SGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWG 414

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           AL+    + G  ++  ++ +RL  ++P D   Y+ ++N+ S  G+W + ++VR +MK+R 
Sbjct: 415 ALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERV 474

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           + +  G S+IE   K+H F+ GD+ H  TE IY KL EL+ +   +G+    + +LH+V 
Sbjct: 475 LIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVD 534

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           +  K + +  HSEKLA+AFGL+     G  L I KN+RIC DCH   K IS + +R I++
Sbjct: 535 EEVKEDLINKHSEKLAIAFGLLV-TNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIII 593

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD  R+H F NG C+CGD W
Sbjct: 594 RDTKRFHHFTNGLCSCGDYW 613



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 145/307 (47%), Gaps = 5/307 (1%)

Query: 82  NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSAL 141
           N F S L  PT     N  +L S   T  S   +  +  +LH   +K   ++  F G  L
Sbjct: 21  NSFASQLS-PTFHAFSNVDSLVSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQL 79

Query: 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSDVGST 200
           V  Y       +A ++FDE+ ++D+V + ++I GF++ + L   L +   MR    +   
Sbjct: 80  VSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPN 139

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
              V   + A A +  ++  + IHG AV SG+   V V   LI+ YGK G +  A  +F 
Sbjct: 140 EVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLF- 198

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
           E +SV + ++WN+M+A +   G     +  F ++   G   D+ + +++L A  N G+  
Sbjct: 199 EGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRK 258

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
            +E  +    +   L+  L   T L+    + G L D+ ++   M   PDA  W A+LS 
Sbjct: 259 LAEA-VHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGM-INPDAVAWTAMLSS 316

Query: 381 SAIHGKA 387
            A+HG+ 
Sbjct: 317 YAMHGRG 323


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 308/570 (54%), Gaps = 16/570 (2%)

Query: 17  DPRIVHA-RALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP--NIVSWTALISA 73
           D R++H+  AL   +++  + N ++T Y +   +  + ++F+ +     ++VSW  ++SA
Sbjct: 265 DGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSA 324

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + ++    +   ++  +  +    ++ T  SL   C+S     L G  LH   +   L  
Sbjct: 325 YVHNDRGKD---AIQLYQRMQLRADKVTYVSLLSACSSAEDVGL-GRVLHKQIVNDELEK 380

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM- 192
               G+ALV  Y++  S   A+ VFD++ +R ++ +  +I  + +   + ++  +F  M 
Sbjct: 381 NVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQML 440

Query: 193 ------RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
                  S  V          L A A+++A+EQ +++   A   GL  +  VGT +++ Y
Sbjct: 441 ELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLY 500

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
           GK G + + RR+FD   S  +   WNAM+A YAQ G     L+LF  +EM G  PD +SF
Sbjct: 501 GKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSF 560

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           +++L A  + GL  + + +   M   Y+ +   ++H+ C+   +GR GRL++AE     +
Sbjct: 561 VSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKL 620

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           P +PDA  W +LL+    H     A ++  +L+ + P   + YV ++N+ + + +W  VA
Sbjct: 621 PVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVA 680

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           +VRK M ++ V+KE G S IE+   +H F  GD  H R  +I  +LA+L  + +  GYVP
Sbjct: 681 KVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVP 740

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
               +LH V ++EK   L+ HSE+LA+A GL+S  P G  LR+ KNLR+C DCH + K I
Sbjct: 741 DTKMVLHFVDEQEKERLLFSHSERLAIALGLIS-TPLGTPLRVTKNLRVCSDCHTATKLI 799

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S++  R+IVVRD  R+H F +G C+C D W
Sbjct: 800 SKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 177/382 (46%), Gaps = 24/382 (6%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIVSWTALISAHSNSPLSLNIFLSML 88
           + D  + N L+  Y K   LS++ R+F  +  + N++SW+ +  AH+   L  N++   L
Sbjct: 177 EIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHA---LHGNVW-EAL 232

Query: 89  RHPTLSFL----PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
           RH     L      +  + ++   C+S +     G  +HS         +    +A++  
Sbjct: 233 RHFRFMLLLGIKATKSAMVTILSACSSPA-LVQDGRLIHSCIALSGFESELLVANAVMTM 291

Query: 145 YSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
           Y R  + + A+KVFD + E  RDVV +  M+  +  N R  D++ ++  M+      T  
Sbjct: 292 YGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRADKVTYV 351

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
            +  A  +A ++      RV+H   V   L++NVIVG  L+  Y K G  ++AR VFD+ 
Sbjct: 352 SLLSACSSAEDVGLG---RVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDK- 407

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEM------RGFAPDEYSFLAVLTALCN 315
           +   + I+W  +++ Y ++   +    LF  +LE+      +   PD  +F+ +L A C 
Sbjct: 408 MEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNA-CA 466

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
              A E  K +        L       T +++  G+ G +E+  RI   +   PD  +W 
Sbjct: 467 DVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWN 526

Query: 376 ALLSFSAIHGKADMASKMGKRL 397
           A+++  A  G++  A K+  R+
Sbjct: 527 AMIAVYAQFGQSHEALKLFWRM 548



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 4/281 (1%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSL-HDKPFCGSALVHFYSRFRSPDNAKKVFD 159
           T A L + CA  + A   G  +HSL++K +L       G+ +V  Y+   SP +AK  FD
Sbjct: 45  TYARLLQRCAR-AQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFD 103

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
            + +R++  +  ++  FA + +  ++L     MR   V         AL +  +  ++  
Sbjct: 104 ALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRD 163

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
              IH   V S L+ +  V   L++ Y K G +S A+RVF +     N I+W+ M   +A
Sbjct: 164 GIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHA 223

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
             G+    L  F  + + G    + + + +L+A C++    +  + I         E  L
Sbjct: 224 LHGNVWEALRHFRFMLLLGIKATKSAMVTILSA-CSSPALVQDGRLIHSCIALSGFESEL 282

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFE-PDAAVWRALLS 379
                +++  GR G +E+A ++  AM     D   W  +LS
Sbjct: 283 LVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLS 323


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/559 (32%), Positives = 314/559 (56%), Gaps = 11/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNS 77
           +H +  K    ++  + N+L++ Y+K   +SY+  +F+ +    +VSWT++IS +  +  
Sbjct: 107 IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 166

Query: 78  PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           P+ +LN+F  M +    +  P+   L S+     ++      G S+H L  KL L  +P 
Sbjct: 167 PMEALNVFKEMRQ---CNVKPDWIALVSVMTAYTNVED-LGQGKSIHGLVTKLGLEFEPD 222

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
              +L   Y++    + A+  F+ + + +++ + AMI G+A N    +++ +F +M + +
Sbjct: 223 IVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKN 282

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      +  A+ A+A++ ++E  R + G+   S    +  V TGLID Y K G +  AR
Sbjct: 283 IRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLAR 342

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFD  ++  + + W+ M+ GY   G     + L++ ++  G  P++ +F+ +LTA  N+
Sbjct: 343 CVFDR-VADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNS 401

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E  +    M   + +EP  +HY+C++  +GRAG L  A    M+MP +P  +VW A
Sbjct: 402 GLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGA 460

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LLS   IH K  +     ++L  ++PY+   YV ++N+ +    W  VA VR +M  + +
Sbjct: 461 LLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGL 520

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            K+ G S IE+ G +  F  GDR H ++++I+ +L  L +  +  GYVP  + +LH++  
Sbjct: 521 NKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNH 580

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            E  E L +HSE+LA+A+G++S AP G TLRI KNLR C +CH + K IS++V+REI++R
Sbjct: 581 EEIEETLCHHSERLAVAYGIISTAP-GTTLRITKNLRACINCHSAIKLISKLVDREIIIR 639

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F +G C+CGD W
Sbjct: 640 DAKRFHHFKDGVCSCGDFW 658



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 151/345 (43%), Gaps = 10/345 (2%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASL 105
           ++Y+ + F  +  P+I+ W A+I  ++   +    + +++ M         PN  T   +
Sbjct: 35  VNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDM---QISQVHPNCFTFLYV 91

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K C   S   + G  +H  + K       F  ++LV  Y++F     A+ VFD++ +R 
Sbjct: 92  LKACGGTSVEGI-GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRT 150

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           VV + ++I G+ QN   +++L+VF +MR  +V      +   + A   +  + Q + IHG
Sbjct: 151 VVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHG 210

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
                GL+    +   L   Y K G+V  AR  F+  +   N I WNAM++GYA  G   
Sbjct: 211 LVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNR-MEKPNLILWNAMISGYANNGYGE 269

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             ++LF  +  +    D  +  + + A    G + E  +W++    + +        T L
Sbjct: 270 EAIKLFREMITKNIRVDSITMRSAVLASAQVG-SLELARWLDGYISKSEYRDDTFVNTGL 328

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           I    + G +  A R       + D  +W  ++    +HG    A
Sbjct: 329 IDMYAKCGSIYLA-RCVFDRVADKDVVLWSVMIMGYGLHGHGQEA 372



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 3/276 (1%)

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           LH   F     ++    F   + A K F E+ E D++ + A+I G+ Q + +   + ++ 
Sbjct: 15  LHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYM 74

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           DM+ S V    +     L+A    +     + IHG     G   NV V   L+  Y K G
Sbjct: 75  DMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFG 134

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +S AR VFD+ L     ++W ++++GY Q GD    L +F  +      PD  + ++V+
Sbjct: 135 QISYARIVFDK-LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVM 193

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           TA  N    G+  K I  +  +  LE   +    L +   + G +E A      M  +P+
Sbjct: 194 TAYTNVEDLGQG-KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPN 251

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
             +W A++S  A +G  + A K+ + +I  N   DS
Sbjct: 252 LILWNAMISGYANNGYGEEAIKLFREMITKNIRVDS 287


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 191/556 (34%), Positives = 302/556 (54%), Gaps = 19/556 (3%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSP----NIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           +N ++T YS+      +L LF  I       N+V+W+A+I+ ++   L         +  
Sbjct: 300 WNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMR 359

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-------DKPFCGSALVHF 144
                PN  TL SL   CA L+   L G   H  ++K  L+       D     +AL+  
Sbjct: 360 LCGSEPNVVTLVSLLSGCA-LAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDM 418

Query: 145 YSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD--VGST 200
           YS+ +SP  A+ +FD I  ++R VV +  +I G AQ+    ++L +F+ M   D  V   
Sbjct: 419 YSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPN 478

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIVSDARRVF 259
            + +S AL A A L A+   R IH + + +  +  ++ V   LID Y K+G V  AR VF
Sbjct: 479 AFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVF 538

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D N+   N ++W ++M GY   G     L++F+ ++  G  PD  +F+ VL A  ++G+ 
Sbjct: 539 D-NMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMV 597

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +   +   M   + + PG EHY C++  + RAGRL++A  +   MP +P  AVW ALLS
Sbjct: 598 DQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLS 657

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              ++   ++      +L+++   +D +Y +++N+ +    W +VA +R +MK+  ++K 
Sbjct: 658 ACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKR 717

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SW++ +     F AGD  H  ++ IY  L +LM+  + LGYVP     LH+V D EK
Sbjct: 718 PGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEK 777

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
            + L  HSEKLALA+G+++ AP G  +RI KNLR C DCH +F YIS ++E EI+VRD +
Sbjct: 778 GDLLSEHSEKLALAYGILTTAP-GAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSS 836

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F NGSC+C   W
Sbjct: 837 RFHHFKNGSCSCRGYW 852



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 200/460 (43%), Gaps = 65/460 (14%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAH-- 74
           VHA    S  + +  + N L++ Y +      + ++F+ +      ++VSW ++++A+  
Sbjct: 148 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 207

Query: 75  -SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
             +S  ++ +F  M     L   P+  +L ++   CAS+  A+  G  +H  +L+  L +
Sbjct: 208 GGDSIRAMKMFERMTE--DLGIRPDAVSLVNVLPACASVG-AWSRGKQVHGYALRSGLFE 264

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F G+A+V  Y++    + A KVF+ ++ +DVV + AM+ G++Q  R  D+L +F  +R
Sbjct: 265 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 324

Query: 194 SSDVGSTMYCVSGALRAAAE-------LAAMEQCRV------------------------ 222
              +   +   S  +   A+       L    Q R+                        
Sbjct: 325 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLL 384

Query: 223 ----IHGHAV--VSGLDRN-----VIVGTGLIDGYGKAGIVSDARRVFD----ENLSVLN 267
                H HA+  +  LD N     ++V   LID Y K      AR +FD    ++ SV  
Sbjct: 385 HGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSV-- 442

Query: 268 SIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKW 325
            + W  ++ G AQ G+ +  LELF  +L+   F  P+ ++    L A    G A    + 
Sbjct: 443 -VTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLG-ALRFGRQ 500

Query: 326 IERMKVRYKLEPGLEHY-TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
           I    +R + E  +     CLI    ++G + DA R+      + +   W +L++   +H
Sbjct: 501 IHAYVLRNRFESAMLFVANCLIDMYSKSGDV-DAARVVFDNMHQRNGVSWTSLMTGYGMH 559

Query: 385 GKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDE 423
           G+ + A ++   +  +    D   +V+V    S  G  D+
Sbjct: 560 GRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQ 599



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 151/359 (42%), Gaps = 21/359 (5%)

Query: 70  LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
           LIS     P    +FL+     T S        ++LF  C SL+ A L    +H   L  
Sbjct: 2   LISLPRLKPKPPLLFLTTFFFSTAS--STTDLTSTLFHQCKSLASAEL----IHQQLLVQ 55

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLVDSLS 187
            L   P   + ++  Y  F SP  A  V   +      V  +  +I        L D L 
Sbjct: 56  GLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQ 112

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           ++  M+        Y     L+A  E+ +      +H     SG + NV VG GL+  YG
Sbjct: 113 LYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYG 172

Query: 248 KAGIVSDARRVFDE--NLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEY 304
           + G   +AR+VFDE     V + ++WN+++A Y Q GD    +++F  + E  G  PD  
Sbjct: 173 RCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAV 232

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           S + VL A  + G A    K +    +R  L   +     ++    + G +E+A ++   
Sbjct: 233 SLVNVLPACASVG-AWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFER 291

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVG 419
           M  + D   W A+++  +  G+ D A     K+ +  I++N    SA VI      G+G
Sbjct: 292 MKVK-DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSA-VIAGYAQRGLG 348


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 189/559 (33%), Positives = 298/559 (53%), Gaps = 10/559 (1%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H   +K+  Q +  + + LI  Y+K   L+ +LR+   +P  ++VSWTA+I+ +    +
Sbjct: 485  IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDM 544

Query: 80   ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
               +L +F  M  +  + F  +    AS    CA +  A   G  +H+ S          
Sbjct: 545  FSEALQLFEEM-EYRGIQF--DNIGFASAISACAGI-RALRQGQQIHAQSYAAGFGADLS 600

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
              +AL+  Y+R      A   F++I +++ + + +++ G AQ+    ++L VF  M  ++
Sbjct: 601  INNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTE 660

Query: 197  VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                M+    A+ AAA LA ++Q + IH   + +G D    V   LI  Y K+G +SDA 
Sbjct: 661  AEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAW 720

Query: 257  RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            R F++ +S  N I+WNAM+ GY+Q G     L LF  +++ G  P+  +F+ VL+A  + 
Sbjct: 721  REFND-MSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHI 779

Query: 317  GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            GL  E   + E M   + L P  EHY C++  +GRAG+L+ A      MP   DA +WR 
Sbjct: 780  GLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRT 839

Query: 377  LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
            LLS   IH   ++  +    L+++ P D + YV+++N+ +   +W      RK+MKD  V
Sbjct: 840  LLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGV 899

Query: 437  RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            +KE GRSWIEVK  VH F AGD++H  T  IY  +  L      +GYV     +L+    
Sbjct: 900  KKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQ 959

Query: 497  REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             +K      HSEKLA+AFGL+S       +R++KNLR+C DCH   KY+S++  R I+VR
Sbjct: 960  GQKDPITHVHSEKLAIAFGLLS-LGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVR 1018

Query: 557  DVNRYHRFLNGSCTCGDLW 575
            D +R+H F  G C+C D W
Sbjct: 1019 DAHRFHHFDGGVCSCKDFW 1037



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 168/373 (45%), Gaps = 8/373 (2%)

Query: 21  VHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH+R          +  NL+ + YSK+  +  + ++FN I   +IV+W A+IS  S + L
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                L           P    L+S+      +   F  G  LH L +K   H + +  +
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKI-QLFELGEQLHCLVIKWGFHSETYVCN 300

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            LV  YSR R   +A+++F  +  RD V Y ++I G  Q      +L +F  M+   +  
Sbjct: 301 GLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKP 360

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               V+  L A A + A+ +   +H HA+ +G+  ++I+   L+D Y K   V  A + F
Sbjct: 361 DCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
                  N + WN M+  Y Q  + S   E+F  ++M G  P+++++ ++L    + G  
Sbjct: 421 LXT-ETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
              E+ I    ++   +  +   + LI    + G+L  A RI   +P E D   W A+++
Sbjct: 480 YLGEQ-IHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIA 537

Query: 380 FSAIHGKADMASK 392
               H   DM S+
Sbjct: 538 GYVQH---DMFSE 547



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 8/301 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H R  KS    +  + ++L+ NY +      ++++F+   + ++ SW  +I        
Sbjct: 80  LHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKS 139

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +  +F    R       PN  T A + K C     AF +   +HS +        P   +
Sbjct: 140 NFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVAN 199

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            L+  YS+    ++AKKVF+ I  +D+V + AMI G +QN    +++ +F DM +S++  
Sbjct: 200 LLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFP 259

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T Y +S  L A+ ++   E    +H   +  G      V  GL+  Y ++  +  A R+F
Sbjct: 260 TPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIF 319

Query: 260 DENLSVLNS---IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
               S +NS   +++N++++G  QQG     LELF  ++     PD  +  ++L+A  + 
Sbjct: 320 ----STMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASV 375

Query: 317 G 317
           G
Sbjct: 376 G 376



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 172/369 (46%), Gaps = 11/369 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---N 76
           +H+ A+K+   AD  +  +L+  YSK   +  + + F    + NIV W  ++ A+    N
Sbjct: 384 LHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDN 443

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S  IF  M        +PNQ T  S+ +TC SL  A   G  +H+  +K       +
Sbjct: 444 LSDSFEIFRQMQME---GMIPNQFTYPSILRTCTSLG-ALYLGEQIHTHVIKTGFQLNVY 499

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             S L+  Y+++     A ++   + E DVV + AMI G+ Q+    ++L +F +M    
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG 559

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +       + A+ A A + A+ Q + IH  +  +G   ++ +   LI  Y + G + +A 
Sbjct: 560 IQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAY 619

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             F E +   N+I+WN++++G AQ G     L++F  +       + +++ + ++A  + 
Sbjct: 620 LAF-EKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASL 678

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               + ++ I  M ++   +   E    LIS   ++G + DA R    M  E +   W A
Sbjct: 679 ANIKQGQQ-IHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNA 736

Query: 377 LLSFSAIHG 385
           +++  + HG
Sbjct: 737 MITGYSQHG 745



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 124/300 (41%), Gaps = 19/300 (6%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T  SLF+T           + LH    K     +P    +LV  Y R      A KVFDE
Sbjct: 70  TSGSLFET-----------MRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDE 118

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA-AELAAMEQ 219
              R V  +  MI  F           +F  M +  +    Y  +G L+A      A   
Sbjct: 119 NSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNY 178

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            + +H      G D + +V   LID Y K G +  A++VF+  + + + + W AM++G +
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN-CICMKDIVTWVAMISGLS 237

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G +   + LF  +      P  Y   +VL+A     L    E+ +  + +++      
Sbjct: 238 QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ-LHCLVIKWGFHS-- 294

Query: 340 EHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           E Y C  L++   R+ +L  AERI   M    D   + +L+S     G +D A ++  ++
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISGLVQQGFSDRALELFTKM 353



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 8/186 (4%)

Query: 195 SDVGSTMYCVSGALRAAAELAAME-QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           S+  + ++ + G L + +    M   CR+       SG D   ++   L+D Y + G   
Sbjct: 56  SNYQNYLWLLEGCLTSGSLFETMRLHCRISK-----SGFDGEPLLIDSLVDNYFRHGDQH 110

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A +VFDEN S  +  +WN M+  +  Q     V  LF  +   G  P+ Y+F  VL A 
Sbjct: 111 GAVKVFDEN-SNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC 169

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
               +A    K +      Y  +        LI    + G +E A+++   +  + D   
Sbjct: 170 VGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMK-DIVT 228

Query: 374 WRALLS 379
           W A++S
Sbjct: 229 WVAMIS 234


>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
          Length = 628

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/516 (34%), Positives = 288/516 (55%), Gaps = 11/516 (2%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N L   Y K+  L  + +LF+ +P  N+ +W A+++  +N      SL +FL M R   
Sbjct: 110 WNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRRE-- 167

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYSRFRSP 151
               P++  L S+ + CA L    + G  +H+  ++  L D+  C GS+L H Y R    
Sbjct: 168 -GMHPDEFGLGSVSRCCAGLRDV-VTGRQVHAYVVRSGL-DRDMCVGSSLAHMYMRCGCL 224

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
              + V   +    +V    +I G  QN     +L  F  MRS  V + +     A+ + 
Sbjct: 225 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 284

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           ++LAA+ Q + IHG  + +G+D+ V V T L+  Y + G + D+ RVF       ++   
Sbjct: 285 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGS-DTFLL 343

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           +AM++ Y   G     +ELF  +   G  P + +FLA+L A  ++GL  E     E M  
Sbjct: 344 SAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y ++P ++HYTC++  +GR+G L++AE + ++MP  PD  +W+ LLS        DMA 
Sbjct: 404 TYGIQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAE 463

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           ++ KR+I+++P+D ++YV+++N+ +   RW +V+EVRK M+D  VRKE G SW+E+KG +
Sbjct: 464 RIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHI 523

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F  GD  H R ++I   L E+M +  + GY P    +LH++ D EK  +L +HSEKLA
Sbjct: 524 HQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLA 583

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
           +AF  +S  P G  +R++KNLR+C DCH + K +S+
Sbjct: 584 IAFAFLS-LPEGVPIRVMKNLRVCDDCHLAIKLMSQ 618



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 41/186 (22%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+   R +H  A  SG   +      L+  Y   G ++ AR +F E +   N ++WN + 
Sbjct: 56  ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELF-ERIPRRNVMSWNILF 114

Query: 276 AGYAQQGDQSTVLELFH-----------------------------LLEMR--GFAPDEY 304
            GY + GD     +LF                               L+MR  G  PDE+
Sbjct: 115 GGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGLFLDMRREGMHPDEF 174

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG----RAGRLEDAER 360
              +V  + C AGL    +    R    Y +  GL+   C+ S++     R G L++ E 
Sbjct: 175 GLGSV--SRCCAGL---RDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEA 229

Query: 361 IAMAMP 366
           +   +P
Sbjct: 230 VLRMLP 235


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 169/437 (38%), Positives = 252/437 (57%), Gaps = 2/437 (0%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           ++L++ + +      AK++F ++ E++VV +  M+ GF+QN     +L  F  M      
Sbjct: 245 NSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGAR 304

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
              Y +  AL A A++ A++    IH +   +G   N+++GT L+D Y K G +  A +V
Sbjct: 305 PNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKV 364

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E       + W+ M+ G+A  G     L+ F  ++  G  PD   FLAVL A  ++G 
Sbjct: 365 FHETKEK-GLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQ 423

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E  K+ + M+  Y +EP ++HYT ++  +GRAGRL++A +   AMP  PD  VW AL 
Sbjct: 424 VNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALF 483

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
                H   +MA    K+L+ + P    +YV ++N  + VGRWD+   VR  M+D    K
Sbjct: 484 CACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHK 543

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
           + G S+IEV  K+H F+AGD  H R  +IY+KL E+       GY    + +LHN+ + E
Sbjct: 544 DPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEE 603

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K EAL YHSEKLALAFG+VS  P G T+RIVKNLR+C DCH   KY S++ +REI++RD+
Sbjct: 604 KEEALGYHSEKLALAFGIVSTRP-GTTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDM 662

Query: 559 NRYHRFLNGSCTCGDLW 575
            R+H F +G C+CGD W
Sbjct: 663 KRFHHFNDGVCSCGDYW 679



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 27/293 (9%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLS 86
           + D   +N+LI  + K   +  +  LF  +P  N+VSWT +++  S +     +L  F  
Sbjct: 238 KKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFC 297

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL----SLKLSLHDKPFCGSALV 142
           ML        PN  T+ S    CA +  A   GL +H+       KL+L      G+ALV
Sbjct: 298 MLEEGAR---PNDYTIVSALSACAKIG-ALDAGLRIHNYLSGNGFKLNL----VIGTALV 349

Query: 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
             Y++  + ++A+KVF E +E+ ++ +  MI G+A +     +L  F  M+ +       
Sbjct: 350 DMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSV 409

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG------TGLIDGYGKAGIVSDAR 256
                L A +    + +     G      + R  ++       T ++D  G+AG + +A 
Sbjct: 410 VFLAVLNACSHSGQVNE-----GLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEAL 464

Query: 257 RVFDENLSVLNSIAWNAMM-AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
           +         + + W A+  A    +  +   L    LL++    P  Y FL+
Sbjct: 465 KFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLS 517



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 12/223 (5%)

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205
           S   S D A  +F     ++   + A+I G A+NSR   S+S F  M    +        
Sbjct: 85  SSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFP 144

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL-S 264
             L++AA L+     R +H   +  GL+ +  V   L+D Y K   +  A +VFDE+  S
Sbjct: 145 FVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPES 204

Query: 265 VLNS--IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
           V N   + WN ++ GY + GD     ELF  +  +    D  S+ +++      G  G +
Sbjct: 205 VKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKK----DTGSWNSLINGFMKMGDMGRA 260

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           ++   +M      E  +  +T +++   + G  E A      M
Sbjct: 261 KELFVKMP-----EKNVVSWTTMVNGFSQNGDPEKALETFFCM 298


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 190/593 (32%), Positives = 316/593 (53%), Gaps = 47/593 (7%)

Query: 21  VHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            HA  + ++Q     I N  + N + ++L +Y+ +LF+ IP P++  +  +I +HS SP 
Sbjct: 198 THANLITTAQITLPVIANKFLKNVALASL-TYAHKLFDQIPQPDLFIYNTMIKSHSMSPH 256

Query: 80  S----LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           S    + +F S++R     + PN+ +    F  C +       G  + + ++K+ L    
Sbjct: 257 SYLDSIAVFRSLIRDS--GYFPNRYSFVFAFGACGN-GMCVREGEQVFTHAVKVGLDGNV 313

Query: 136 FCGSALVHFYSRFRSPDNA-------------------------------KKVFDEIRER 164
           F  +AL+  + ++   ++A                               K++FDE+ ER
Sbjct: 314 FVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHER 373

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
           DVV +  +I G+ Q    +++L  F  M  S+V    Y +  AL A + L A++Q + IH
Sbjct: 374 DVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIH 433

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
            +     +  N  +   LID Y K G +  A  VF E+        WNAM+ G+A  G  
Sbjct: 434 VYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKP 493

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              + +F  +++   +P++ +F+A+L A  +  +  E + + E M   Y + P +EHY C
Sbjct: 494 EEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGC 553

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  + R+G L+D+E + ++MP  PD A+W ALL+   I+   +   ++G+ + +I+P  
Sbjct: 554 MVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNH 613

Query: 405 DSAYVIVANVLSGVGRWDEVAEVR---KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMH 461
               V++ N+ S  GRW+E   VR   ++  DR  +K  G S IE+ G  H FL GDR H
Sbjct: 614 IGCNVLLGNIYSTSGRWNEARMVREKNEINSDR--KKIPGFSSIELNGVFHEFLVGDRSH 671

Query: 462 ERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE-ALWYHSEKLALAFGLVSGA 520
            ++ +IY+ L E++ + +  GYVP   E+L +  D E +E AL  HSEKLA+AFGL++ A
Sbjct: 672 PQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTA 731

Query: 521 PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
           P G  +RIVKNLR+C DCH++ K+IS+V +R I+VRD  RYH F +G C+C D
Sbjct: 732 P-GTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKD 783


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 181/554 (32%), Positives = 294/554 (53%), Gaps = 11/554 (1%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNI 83
           +SS  D   Y  L+T Y+    +  +  +F+ IP  ++VSW A+IS +    N   +L +
Sbjct: 123 RSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALEL 182

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M++    +  P++ T+ ++    A  S +   G  +HS              +AL+ 
Sbjct: 183 FKEMMK---TNVRPDESTMVTVISASAR-SGSIELGRQVHSWIADHGFGSNLKIVNALID 238

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
           FYS+    + A  +F  +  +DV+ +  +I G+   +   ++L +F +M  S        
Sbjct: 239 FYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVT 298

Query: 204 VSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           +   L A A L A++  R IH +    + G+     + T LID Y K G +  A +VF+ 
Sbjct: 299 MLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNS 358

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            L   +  AWNAM+ G+A  G  +   ++F  +      PD+ +F+ +L+A  +AG+   
Sbjct: 359 MLHK-SLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDL 417

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
                  M   YK+ P LEHY C+I  +G +G  ++AE +   M  EPD  +W +LL   
Sbjct: 418 GRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKAC 477

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
            +HG  ++  K  + L  I P +  +YV+++N+ +  GRW+EVA +R ++ D+ ++K  G
Sbjct: 478 KMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPG 537

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
            S IE+   VH F+ GD+ H R  +IY  L E+    +  G+VP   E+L  + +  K  
Sbjct: 538 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEG 597

Query: 502 ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
           AL +HSEKLA+AFGL+S  P  K L IVKNLR+CR+CHE+ K IS++ +REI+ RD  R+
Sbjct: 598 ALRHHSEKLAIAFGLISTKPETK-LTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRF 656

Query: 562 HRFLNGSCTCGDLW 575
           H F +G C+C D W
Sbjct: 657 HHFRDGVCSCNDYW 670



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 184/417 (44%), Gaps = 56/417 (13%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSP---LSLNIFLSMLRHPTLSFLPNQRTLASL 105
           L Y++ +F  I  PN++ W  +   H+ SP    +L +++ M+   +L  LPN  T   L
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMI---SLGLLPNSYTFPFL 69

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K+CA L  A   GL +H   LKL      +  ++L+  Y +    ++A KVFD    RD
Sbjct: 70  LKSCAKLK-ASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRD 128

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG------------------- 206
           VV Y A++ G+A    +  + ++F ++   DV S    +SG                   
Sbjct: 129 VVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMK 188

Query: 207 ------------ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                        + A+A   ++E  R +H      G   N+ +   LID Y K G +  
Sbjct: 189 TNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMET 248

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F   LS  + I+WN ++ GY         L LF  +   G +P++ + L++L A  
Sbjct: 249 ACGLF-LGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACA 307

Query: 315 NAGLAGESEKWI-----ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           + G A +  +WI     +R+K    +       T LI    + G +E A ++  +M    
Sbjct: 308 HLG-AIDIGRWIHVYIDKRLK---GVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM-LHK 362

Query: 370 DAAVWRALLSFSAIHGKA----DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
               W A++   A+HG+A    D+ S+M K   +I P DD  +V + +  S  G  D
Sbjct: 363 SLPAWNAMIFGFAMHGRANAAFDIFSRMRKN--EIKP-DDITFVGLLSACSHAGMLD 416


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 184/556 (33%), Positives = 301/556 (54%), Gaps = 15/556 (2%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
           +SS  D   Y  LIT Y+    ++ + ++F+ IP  ++VSW A+IS ++   N+  +L +
Sbjct: 163 QSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALEL 222

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M++    +  P++ T+ S+   CA  S +   G  +HS              +AL+ 
Sbjct: 223 FKEMMK---TNVRPDESTMVSVVSACAQ-SASIELGRQVHSWIDDHGFGSNLKIVNALID 278

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y +    + A  +F+ +  +DV+ +  +I G+   +   ++L +F +M  S        
Sbjct: 279 LYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 338

Query: 204 VSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           +   L A A L A+E  R IH +    + G+       T LID Y K G +  A++VFD 
Sbjct: 339 MLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFD- 397

Query: 262 NLSVLNSI--AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
             S+LN    +WNAM+ G+A  G  +   ++F  +      PD+ +F+ +L+A  ++G+ 
Sbjct: 398 --SILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGML 455

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
                    MK  YK+ P LEHY C+I  +G +G  ++AE +   M  EPD  +W +LL 
Sbjct: 456 DLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLK 515

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              ++   ++     + LI I P +  +YV+++N+ +  GRW+EVA++R ++ D+ ++K 
Sbjct: 516 ACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKV 575

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G S IE+   VH F+ GD+ H R  +IY  L E+    E  G+VP   E+L  + +  K
Sbjct: 576 PGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWK 635

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
             AL +HSEKLA+AFGL+S  P G  L IVKNLR+CR+CHE+ K IS++ +REI+ RD  
Sbjct: 636 EGALRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRT 694

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F +G C+C D W
Sbjct: 695 RFHHFRDGVCSCNDYW 710



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 213/467 (45%), Gaps = 70/467 (14%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNL------------LSYSLRLFNHIPSPNIVS 66
           R++HA+ +K+      ++N   TNY+ S L            L Y++ +F  I  PN++ 
Sbjct: 19  RMIHAQMIKTG-----LHN---TNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLI 70

Query: 67  WTALISAH--SNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           W  +   H  S+ P+S L +++ M+   +L  LPN  T   L K+CA  S AF  G  +H
Sbjct: 71  WNTMFRGHALSSDPVSALYLYVCMI---SLGLLPNCYTFPFLLKSCAK-SKAFREGQQIH 126

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
              LKL      +  ++L+  Y +    ++A+KVFD+   RDVV Y A+I G+A    + 
Sbjct: 127 GHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIA 186

Query: 184 DSLSVFADMRSSDVGSTMYCVSG-------------------------------ALRAAA 212
            +  +F ++   DV S    +SG                                + A A
Sbjct: 187 SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACA 246

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           + A++E  R +H      G   N+ +   LID Y K G V  A  +F E LS  + I+WN
Sbjct: 247 QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF-EGLSYKDVISWN 305

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE-RMKV 331
            ++ GY         L LF  +   G +P++ + L++L A  + G A E  +WI   +  
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLG-AIEIGRWIHVYINK 364

Query: 332 RYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA--- 387
           R K +     H T LI    + G +E A+++  ++      + W A++   A+HG+A   
Sbjct: 365 RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRANAA 423

Query: 388 -DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
            D+ S+M K   +I P DD  +V + +  S  G  D    + + MK+
Sbjct: 424 FDIFSRMRKN--EIEP-DDITFVGLLSACSHSGMLDLGRHIFRSMKE 467



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 141/325 (43%), Gaps = 55/325 (16%)

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF---YS 146
           HP+LS L N +TL SL                +H+  +K  LH+  +  S L+ F     
Sbjct: 3   HPSLSLLHNCKTLQSL--------------RMIHAQMIKTGLHNTNYALSKLIEFCVLSP 48

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
            F     A  VF+ I+E +++ +  M  G A +S  V +L ++  M S  +    Y    
Sbjct: 49  HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPF 108

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN---- 262
            L++ A+  A  + + IHGH +  G D ++ V T LI  Y + G + DAR+VFD++    
Sbjct: 109 LLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 168

Query: 263 --------------------------LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
                                     + + + ++WNAM++GYA+ G+    LELF  +  
Sbjct: 169 VVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMK 228

Query: 297 RGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
               PDE + ++V++A   +    L  +   WI+     +     L+    LI    + G
Sbjct: 229 TNVRPDESTMVSVVSACAQSASIELGRQVHSWID----DHGFGSNLKIVNALIDLYIKCG 284

Query: 354 RLEDAERIAMAMPFEPDAAVWRALL 378
            +E A  +   + ++ D   W  L+
Sbjct: 285 EVETACGLFEGLSYK-DVISWNTLI 308



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 122/315 (38%), Gaps = 59/315 (18%)

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLI---------DGYGKAGIVSDARRVFDENLSVL 266
            ++  R+IH   + +GL       + LI         DG      +  A  VF E +   
Sbjct: 14  TLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDG------LPYAISVF-ETIQEP 66

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N + WN M  G+A   D  + L L+  +   G  P+ Y+F  +L + C    A    + I
Sbjct: 67  NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS-CAKSKAFREGQQI 125

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
               ++   +  L  +T LIS   + GRLEDA ++        D   + AL++  A  G 
Sbjct: 126 HGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKV-FDQSSHRDVVSYTALITGYASKGY 184

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVAN-VLSG---VGRWDEVAEVRKVMKDRRVRK---- 438
              A KM     D  P  D   V+  N ++SG    G   E  E+ K M    VR     
Sbjct: 185 IASAQKM----FDEIPIKD---VVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDEST 237

Query: 439 --------------EGGR---SWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC--- 478
                         E GR   SWI+  G    F +  ++     D+Y K  E+   C   
Sbjct: 238 MVSVVSACAQSASIELGRQVHSWIDDHG----FGSNLKIVNALIDLYIKCGEVETACGLF 293

Query: 479 ERLGYVPV--WDEML 491
           E L Y  V  W+ ++
Sbjct: 294 EGLSYKDVISWNTLI 308


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/559 (32%), Positives = 314/559 (56%), Gaps = 11/559 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNS 77
           +H +  K    ++  + N+L++ Y+K   +SY+  +F+ +    +VSWT++IS +  +  
Sbjct: 122 IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 181

Query: 78  PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           P+ +LN+F  M +    +  P+   L S+     ++      G S+H L  KL L  +P 
Sbjct: 182 PMEALNVFKEMRQ---CNVKPDWIALVSVMTAYTNVED-LGQGKSIHGLVTKLGLEFEPD 237

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
              +L   Y++    + A+  F+ + + +++ + AMI G+A N    +++ +F +M + +
Sbjct: 238 IVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKN 297

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      +  A+ A+A++ ++E  R + G+   S    +  V TGLID Y K G +  AR
Sbjct: 298 IRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLAR 357

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFD  ++  + + W+ M+ GY   G     + L++ ++  G  P++ +F+ +LTA  N+
Sbjct: 358 CVFDR-VADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNS 416

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E  +    M   + +EP  +HY+C++  +GRAG L  A    M+MP +P  +VW A
Sbjct: 417 GLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGA 475

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LLS   IH K  +     ++L  ++PY+   YV ++N+ +    W  VA VR +M  + +
Sbjct: 476 LLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGL 535

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            K+ G S IE+ G +  F  GDR H ++++I+ +L  L +  +  GYVP  + +LH++  
Sbjct: 536 NKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNH 595

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            E  E L +HSE+LA+A+G++S AP G TLRI KNLR C +CH + K IS++V+REI++R
Sbjct: 596 EEIEETLCHHSERLAVAYGIISTAP-GTTLRITKNLRACINCHSAIKLISKLVDREIIIR 654

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F +G C+CGD W
Sbjct: 655 DAKRFHHFKDGVCSCGDFW 673



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 151/345 (43%), Gaps = 10/345 (2%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASL 105
           ++Y+ + F  +  P+I+ W A+I  ++   +    + +++ M         PN  T   +
Sbjct: 50  VNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDM---QISQVHPNCFTFLYV 106

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K C   S   + G  +H  + K       F  ++LV  Y++F     A+ VFD++ +R 
Sbjct: 107 LKACGGTSVEGI-GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRT 165

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           VV + ++I G+ QN   +++L+VF +MR  +V      +   + A   +  + Q + IHG
Sbjct: 166 VVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHG 225

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
                GL+    +   L   Y K G+V  AR  F+  +   N I WNAM++GYA  G   
Sbjct: 226 LVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNR-MEKPNLILWNAMISGYANNGYGE 284

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             ++LF  +  +    D  +  + + A    G + E  +W++    + +        T L
Sbjct: 285 EAIKLFREMITKNIRVDSITMRSAVLASAQVG-SLELARWLDGYISKSEYRDDTFVNTGL 343

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           I    + G +  A R       + D  +W  ++    +HG    A
Sbjct: 344 IDMYAKCGSIYLA-RCVFDRVADKDVVLWSVMIMGYGLHGHGQEA 387



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 3/276 (1%)

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           LH   F     ++    F   + A K F E+ E D++ + A+I G+ Q + +   + ++ 
Sbjct: 30  LHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYM 89

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           DM+ S V    +     L+A    +     + IHG     G   NV V   L+  Y K G
Sbjct: 90  DMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFG 149

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +S AR VFD+ L     ++W ++++GY Q GD    L +F  +      PD  + ++V+
Sbjct: 150 QISYARIVFDK-LHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVM 208

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           TA  N    G+  K I  +  +  LE   +    L +   + G +E A      M  +P+
Sbjct: 209 TAYTNVEDLGQG-KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPN 266

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
             +W A++S  A +G  + A K+ + +I  N   DS
Sbjct: 267 LILWNAMISGYANNGYGEEAIKLFREMITKNIRVDS 302


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 194/559 (34%), Positives = 307/559 (54%), Gaps = 25/559 (4%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSP----NIVSWTALISAHSNSPL---SLNIFLSML 88
           +N ++T YS+      +L LF  I       N+V+W+A+I+ ++   L   +L++F  ML
Sbjct: 319 WNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQML 378

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-------DKPFCGSAL 141
                   PN  TL SL   CAS +   L G   H  ++K  L+       D     +AL
Sbjct: 379 ---LCGSEPNVVTLVSLLSGCAS-AGTLLHGKETHCHAIKWILNLDENDPGDDLMVINAL 434

Query: 142 VHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD--V 197
           +  YS+ +SP  A+ +FD I  ++R VV +  +I G AQ+    ++L +F+ M   D  V
Sbjct: 435 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV 494

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIVSDAR 256
               + +S AL A A L A+   R IH + + +  +  ++ V   LID Y K+G V  AR
Sbjct: 495 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAAR 554

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFD N+   N ++W ++M GY   G     L++F+ ++     PD  +F+ VL A  ++
Sbjct: 555 VVFD-NMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHS 613

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G+  +   +   M   + + PG EHY C++  + RAGRL++A  +   MP +P  AVW A
Sbjct: 614 GMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVA 673

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LLS   ++   ++      +L+++   +D +Y +++N+ +    W +VA +R +MK+  +
Sbjct: 674 LLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGI 733

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G SW++ +     F AGD  H  ++ IY  L +LM+  + LGYVP     LH+V D
Sbjct: 734 KKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDD 793

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK + L  HSEKLALA+G+++ AP G  +RI KNLR C DCH +F YIS ++E EI+VR
Sbjct: 794 EEKGDLLSEHSEKLALAYGILTTAP-GAPIRITKNLRACGDCHSAFTYISIIIEHEIIVR 852

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D +R+H F NGSC+C   W
Sbjct: 853 DSSRFHHFKNGSCSCRGYW 871



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 199/460 (43%), Gaps = 65/460 (14%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAH-- 74
           VHA    S  + +  + N L++ Y +      + ++F+ +      ++VSW ++++A+  
Sbjct: 167 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 226

Query: 75  -SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
             +S  ++ +F  M     L   P+  +L ++   CAS+  A+  G  +H  +L+  L +
Sbjct: 227 GGDSIRAMKMFERMTE--DLGIRPDAVSLVNVLPACASVG-AWSRGKQVHGYALRSGLFE 283

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F G+A+V  Y++    + A KVF+ ++ +DVV + AM+ G++Q  R  D+L +F  +R
Sbjct: 284 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 343

Query: 194 SSDV---------------------------------GSTMYCVS--GALRAAAELAAME 218
              +                                 GS    V+    L   A    + 
Sbjct: 344 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLL 403

Query: 219 QCRVIHGHAV--VSGLDRN-----VIVGTGLIDGYGKAGIVSDARRVFD----ENLSVLN 267
             +  H HA+  +  LD N     ++V   LID Y K      AR +FD    ++ SV  
Sbjct: 404 HGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSV-- 461

Query: 268 SIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKW 325
            + W  ++ G AQ G+ +  LELF  +L+   F  P+ ++    L A    G A    + 
Sbjct: 462 -VTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLG-ALRFGRQ 519

Query: 326 IERMKVRYKLEPGLEHY-TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
           I    +R + E  +     CLI    ++G + DA R+      + +   W +L++   +H
Sbjct: 520 IHAYVLRNRFESAMLFVANCLIDMYSKSGDV-DAARVVFDNMHQRNGVSWTSLMTGYGMH 578

Query: 385 GKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDE 423
           G+ + A ++   +  +    D   +V+V    S  G  D+
Sbjct: 579 GRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQ 618



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 150/359 (41%), Gaps = 21/359 (5%)

Query: 70  LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
           LIS     P    +FL+     T S        ++LF  C SL+ A L     H   L  
Sbjct: 21  LISLPRLKPKPPLLFLTTFFFSTAS--STTDLTSTLFHQCKSLASAEL----THQQLLVQ 74

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLVDSLS 187
            L   P   + ++  Y  F SP  A  V   +      V  +  +I        L D L 
Sbjct: 75  GLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQ 131

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           ++  M+        Y     L+A  E+ +      +H     SG + NV VG GL+  YG
Sbjct: 132 LYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYG 191

Query: 248 KAGIVSDARRVFDE--NLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEY 304
           + G   +AR+VFDE     V + ++WN+++A Y Q GD    +++F  + E  G  PD  
Sbjct: 192 RCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAV 251

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           S + VL A  + G A    K +    +R  L   +     ++    + G +E+A ++   
Sbjct: 252 SLVNVLPACASVG-AWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFER 310

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVG 419
           M  + D   W A+++  +  G+ D A     K+ +  I++N    SA VI      G+G
Sbjct: 311 MKVK-DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSA-VIAGYAQRGLG 367


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 192/570 (33%), Positives = 307/570 (53%), Gaps = 20/570 (3%)

Query: 19  RIVHARALKSSQADRS---IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           R +HAR +K+S+  R    +   + + Y+K   LS +  +F+ IP+ N+VSW ALI+A++
Sbjct: 159 REIHAR-IKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYA 217

Query: 76  NSPLS----LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
            S  S    L++F  M  H      P + T   +   C  ++        +    L+  +
Sbjct: 218 QSGHSHHQALDLFEKMAEH---GVRPCRATFVGVLGACNDVTSLEKIHARIVETGLQFDV 274

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
            D     +AL++ Y++  S + A+ +F +++ RD V    MI  FAQ     +S+ VF +
Sbjct: 275 RDVGV-QNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGKESIQVFRE 333

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR-----NVIVGTGLIDGY 246
           M    +       +  + A +   A+E  + IH   V   L R     NV+V T L+  Y
Sbjct: 334 MDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMY 393

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
           GK G +  A+ VF + ++  NS++WNAM+A  A QG               G   D  SF
Sbjct: 394 GKCGTLEQAKAVF-KAMTTKNSVSWNAMLAACAHQGQGDEAAAFLRAAACEGVELDSASF 452

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
           ++VL A  ++G+   +    + M   + L P  E+Y C++  + R+GRL DA+ +  +MP
Sbjct: 453 ISVLIACSHSGMLEVAYDHFQLMLSDFDLVPAAENYRCMVDLLARSGRLGDADELMNSMP 512

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
           F PDA  WR LL    + G  + A+   ++  ++ P + + Y +++++ S  G+ DE+ E
Sbjct: 513 FSPDAIAWRTLLGGCRVQGSLENAASAAEQAFNLEPQNTAPYTLLSSLYSATGKKDELVE 572

Query: 427 VRKVMKDRRVRK-EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           +R  MK+R +RK   GRS IEV G+VH F+AGD  H + + I  +L  L  E ++ G+VP
Sbjct: 573 LRSSMKERGLRKLVPGRSVIEVHGRVHEFVAGDSSHPQIDKILRELDILNVELKQAGFVP 632

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
             D ++H++   +K E L  HSEKLA+AFGL+S    G  L ++KNLR+C DCH + K I
Sbjct: 633 STDGVVHDLKTEDKEEILALHSEKLAVAFGLIS-TKSGIPLLVLKNLRVCSDCHGAIKLI 691

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S++  R I VRD NR+HRF +G+C+CGD W
Sbjct: 692 SKLRSRVITVRDANRFHRFQSGTCSCGDYW 721



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 179/384 (46%), Gaps = 29/384 (7%)

Query: 20  IVHARALKSSQADRSIYNNLIT-NYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSN 76
           I+H +  ++     +  NNL+    +K   L  +  +F+ I   NI SW  +IS  AH  
Sbjct: 62  IIHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAIQHKNIFSWNIIISAYAHRG 121

Query: 77  SP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            P  +L++F  M         P   T A+    C+SL      G  +H+  +K S   +P
Sbjct: 122 HPSTALHLFAKM------DVPPTAMTFATALSACSSLGD-LQRGREIHA-RIKASRGIRP 173

Query: 136 --FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL-VDSLSVFADM 192
                +A+   Y++      AK VFD I  ++VV + A+I  +AQ+      +L +F  M
Sbjct: 174 SVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKM 233

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD---RNVIVGTGLIDGYGKA 249
               V        G L A  ++ ++E+   IH   V +GL    R+V V   L++ Y K 
Sbjct: 234 AEHGVRPCRATFVGVLGACNDVTSLEK---IHARIVETGLQFDVRDVGVQNALLNMYAKC 290

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  AR +F   +   + ++ N M+A +AQQG     +++F  +++ G   D+ +F +V
Sbjct: 291 GSLEVARDIF-RKMQRRDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASV 349

Query: 310 LTALCNAGLAGESEKWIERMKV-----RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +TA C+   A E  K I +  V     R    P +   T L+S  G+ G LE A+ +  A
Sbjct: 350 ITA-CSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKA 408

Query: 365 MPFEPDAAVWRALLSFSAIHGKAD 388
           M  + ++  W A+L+  A  G+ D
Sbjct: 409 MTTK-NSVSWNAMLAACAHQGQGD 431



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 137/308 (44%), Gaps = 23/308 (7%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           +H    +  L    +  + LV   ++  S   A+ +FD I+ +++  +  +I  +A    
Sbjct: 63  IHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAIQHKNIFSWNIIISAYAHRGH 122

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS-GLDRNVIVGT 240
              +L +FA M   DV  T    + AL A + L  +++ R IH     S G+  +VI+ T
Sbjct: 123 PSTALHLFAKM---DVPPTAMTFATALSACSSLGDLQRGREIHARIKASRGIRPSVILDT 179

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG-DQSTVLELFHLLEMRGF 299
            +   Y K G +S A+ VFD  +   N ++WNA++A YAQ G      L+LF  +   G 
Sbjct: 180 AIFSMYAKCGDLSTAKSVFDR-IPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGV 238

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH-------YTCLISAMGRA 352
            P   +F+ VL A CN   +      +E++  R  +E GL+           L++   + 
Sbjct: 239 RPCRATFVGVLGA-CNDVTS------LEKIHARI-VETGLQFDVRDVGVQNALLNMYAKC 290

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL-IDINPYDDSAYVIV 411
           G LE A  I   M    D      +++  A  G    + ++ + + ++  P DD+ +  V
Sbjct: 291 GSLEVARDIFRKMQ-RRDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDDTTFASV 349

Query: 412 ANVLSGVG 419
               S  G
Sbjct: 350 ITACSCCG 357


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 197/598 (32%), Positives = 320/598 (53%), Gaps = 51/598 (8%)

Query: 19  RIVHARALKSSQADRSIYNNLITNY---SKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           R +H + LK+      I  + +  +     S  L+Y+  +F+ I  PN   W  +I  +S
Sbjct: 35  RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYS 94

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           NS     +L ++  ML H   S   N  T   L K C+S+S A      +H+  +K+   
Sbjct: 95  NSKEPEEALLLYHHMLYH---SVPHNAYTFPFLLKACSSMS-ALEETQQIHAHIIKMGFG 150

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            + +  ++L++ YS+     +A+ +FD++ +RD V + +MI G+ +   +  +  +F  M
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210

Query: 193 RSSDVGSTMYCVSG-------------------------------ALRAAAELAAMEQCR 221
              ++ S    +SG                                L+A A+L  ++Q +
Sbjct: 211 PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 270

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF----DENLSVLNSIAWNAMMAG 277
            IH +     ++ + I+G  LID Y K G + +A  VF    ++ +SV     W AM++G
Sbjct: 271 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSV-----WTAMISG 325

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           YA  G     LE F  ++  G  P++ +F  +LTA  +AGL  E++   E M+  +  +P
Sbjct: 326 YAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 385

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            +EHY C++  +GRAG L++AE +   MP +P+AA+W ALL+   IHG  ++  ++GK L
Sbjct: 386 SIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKIL 445

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
           I ++P     Y+ +A++ +  G W++ A VR+ MK++ V K  G S I V G  H FLAG
Sbjct: 446 IQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAG 505

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
           D  H + ++I   L +++E     GY P   ++L ++ D+EK  A+ +HSEKLA+ FGL+
Sbjct: 506 DESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLI 565

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S  P G T+RIVKNLR+C DCH   K IS+V  REI++RD  R+H F +G+CTCGD W
Sbjct: 566 STKP-GMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLID--GYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           ME+ R IHG  + +GL  + I  + L+       +G ++ AR VFD      N+  WN M
Sbjct: 31  MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP-NTFMWNTM 89

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + GY+   +    L L+H +       + Y+F  +L A C++  A E  + I    +  K
Sbjct: 90  IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKA-CSSMSALEETQQIHAHII--K 146

Query: 335 LEPGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           +  G E YT   L++   ++G ++ A R+      + D   W +++      G+ +MA +
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSA-RLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYE 205

Query: 393 MGKRLIDIN 401
           +   + + N
Sbjct: 206 IFNHMPERN 214


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 189/561 (33%), Positives = 305/561 (54%), Gaps = 17/561 (3%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +H   +K   Q+   I N+LIT Y K +    S ++F+ +P  N VSW+A+I A      
Sbjct: 32  IHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDR 91

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
                ++F  ML   +    P++  + +      S   A      ++ + ++  L     
Sbjct: 92  CKEGFSLFRQMLSEGSR---PSRGAILNAMACVRSHEEA----DDVYRVVVENGLDFDQS 144

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             SA    ++R    + A+K+FD I  +D+V +   I  + +    +++L +   M    
Sbjct: 145 VQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQG 204

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI--VGTGLIDGYGKAGIVSD 254
           +      + G +RA + LA+ +   ++HG  + +G   N +  V T LID Y K G ++ 
Sbjct: 205 IFPDAITLLGVIRACSTLASFQLAHIVHG-IITTGFFYNQLLAVETALIDLYVKCGSLTY 263

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR+VFD  +   N I W+AM++GY   G     L LF  ++     PD  +F+++L+A  
Sbjct: 264 ARKVFD-GMQERNIITWSAMISGYGMHGWGREALNLFDQMKA-SVKPDHITFVSILSACS 321

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++GL  E  +    M   + + P  EHY C++  +GRAG+L++A      MP  P+AAVW
Sbjct: 322 HSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVW 381

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    IH   D+A  + + L D++P++   YVI+ N+ +  G+  E   +R +MK+R
Sbjct: 382 GALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNR 441

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            V+K  G S IE+K K++ F+AGDR H +T+ IY++L  LM+   + GY P  + +LH+V
Sbjct: 442 GVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDV 501

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            +  K   L+ HSEKLA+ FGL++  P G  +RI KNLR+C DCH + K+IS+V  REIV
Sbjct: 502 DEETKESMLYLHSEKLAIVFGLLNLGP-GSVIRIRKNLRVCGDCHTATKFISKVTGREIV 560

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD +R+H F NG+C+C D W
Sbjct: 561 VRDAHRFHHFKNGACSCRDYW 581



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 11/300 (3%)

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           MLR   L   P+  T   + K C+ L H F FG+ +H   +K     + F  ++L+  Y 
Sbjct: 1   MLR---LGIQPDNFTFPFIIKACSCLRH-FEFGIRIHQDVVKFGYQSQVFISNSLITMYG 56

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +    + +++VFDE+ +++ V + A+I    Q+ R  +  S+F  M S     +      
Sbjct: 57  KCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSR---GA 113

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L A A + + E+   ++   V +GLD +  V +     + + G V  AR++FD  +S  
Sbjct: 114 ILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSK- 172

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + + W   +  Y +       L L   + ++G  PD  + L V+ A C+   + +    +
Sbjct: 173 DLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRA-CSTLASFQLAHIV 231

Query: 327 ER-MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
              +   +     L   T LI    + G L  A ++   M  E +   W A++S   +HG
Sbjct: 232 HGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQ-ERNIITWSAMISGYGMHG 290


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 200/598 (33%), Positives = 310/598 (51%), Gaps = 42/598 (7%)

Query: 16  TDPRIVHARALKSSQA-DRSIYNNLIT--NYSKSNLLS-YSLRLFNHIPSPNIVSWTALI 71
           T  +  HAR L    A D  I ++L+     S S+L S Y+L ++N I  P + +   +I
Sbjct: 45  TQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMI 104

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFL--PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
                  L  +  +S+  H   SF+  PN+ TL  + + C++ + A   G  + +  +KL
Sbjct: 105 RCFVKGDLPRHS-ISLYSHMCRSFVAAPNKHTLTFVLQACSN-AFAIREGAQVQTHVIKL 162

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI-RERDVVCYGAMIVGFAQNSRLVDSLSV 188
                 F  +AL+H Y      ++AK+VFDE+   RDVV + +MIVGF +  ++  +  +
Sbjct: 163 GFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKL 222

Query: 189 FADMRSSDVGSTMYCVSGA-------------------------------LRAAAELAAM 217
           F +M   DV S    +SG                                L AAA+L  +
Sbjct: 223 FVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTL 282

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
           E  + IH  A          +GT L+D Y K G + ++R +FD  +   +  +WN M+ G
Sbjct: 283 EYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDR-MPEKDKWSWNVMICG 341

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
            A  G     L LF     +GF P   +F+ VLTA   AGL  E + + + M   Y +EP
Sbjct: 342 LATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEP 401

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            +EHY C++  + RAG + DA  +   MP  PD  +W ++L    +HG  ++  ++G +L
Sbjct: 402 EMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKL 461

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
           I ++P  +  YV +A + + + +W++V++VR++M +R   K  G S IE +G+VH F+AG
Sbjct: 462 IQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAG 521

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
           D+ HERT +IY  L  +       GY      +LH++ + EK  A+  HSE+LA+AFGL+
Sbjct: 522 DKEHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLL 581

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
                G  +RI+KNLR+C DCHE  K IS V EREI+VRD +R+H F  G C+C D W
Sbjct: 582 V-TKDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 177/547 (32%), Positives = 294/547 (53%), Gaps = 8/547 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSML 88
           D  +  +L+  YS       +  +F+ + S +++SW A+IS +  +   P S  +F  ++
Sbjct: 280 DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLV 339

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           +  +  F  +  TL SL + C+  S     G  LHS  ++  L       +A+V  YS+ 
Sbjct: 340 QSGS-GF--DSGTLVSLIRGCSQTSD-LENGRILHSCIIRKELESHLVLSTAIVDMYSKC 395

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
            +   A  VF  + +++V+ + AM+VG +QN    D+L +F  M+   V +    +   +
Sbjct: 396 GAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLV 455

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
              A L ++ + R +H H +  G   + ++ + LID Y K G +  A ++F+    + + 
Sbjct: 456 HCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDV 515

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           I  N+M+ GY   G     L ++  +      P++ +F+++LTA  ++GL  E +     
Sbjct: 516 ILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHS 575

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M+  + + P  +HY CL+    RAGRLE+A+ +   MPF+P   V  ALLS    H   +
Sbjct: 576 MERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTN 635

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
           M  ++  RLI ++  +   YV+++N+ +   +W+ V  +R +M+ + ++K  G S IEV 
Sbjct: 636 MGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVG 695

Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSE 508
            KV+ F A D  H    DIY  L  L  E E  GY+P    +L +V +  K + LW HSE
Sbjct: 696 NKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSE 755

Query: 509 KLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           +LA+AFGL+S  P G  ++I KNLR+C DCH   KYIS++V+REI+VRD NR+H F+NG 
Sbjct: 756 RLAIAFGLLS-TPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGK 814

Query: 569 CTCGDLW 575
           C+C D W
Sbjct: 815 CSCNDFW 821



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 184/402 (45%), Gaps = 15/402 (3%)

Query: 45  KSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRT 101
           K   L+ + ++F+ +P  ++V W ++I  +    L   S+ +FL M+        P+  T
Sbjct: 192 KRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGG---GLRPSPVT 248

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           +A+L K C   S     G+  HS  L L + +  F  ++LV  YS      +A  VFD +
Sbjct: 249 MANLLKACGQ-SGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSM 307

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
             R ++ + AMI G+ QN  + +S ++F  +  S  G     +   +R  ++ + +E  R
Sbjct: 308 CSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGR 367

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
           ++H   +   L+ ++++ T ++D Y K G +  A  VF   +   N I W AM+ G +Q 
Sbjct: 368 ILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGR-MGKKNVITWTAMLVGLSQN 426

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE-KWIERMKVRYKLEPGLE 340
           G     L+LF  ++    A +  + ++++   C A L   ++ + +    +R+       
Sbjct: 427 GYAEDALKLFCQMQEEKVAANSVTLVSLVH--CCAHLGSLTKGRTVHAHFIRHGYAFDAV 484

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID- 399
             + LI    + G++  AE++        D  +  +++    +HG    A  +  R+I+ 
Sbjct: 485 ITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEE 544

Query: 400 -INPYDDSAYVIVANVLSGVGRWDEVAEVRKVM-KDRRVRKE 439
            + P + + +V +    S  G  +E   +   M +D  VR +
Sbjct: 545 RLKP-NQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQ 585



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 172/398 (43%), Gaps = 13/398 (3%)

Query: 5   LNQQP--------QPQNTSTDPRIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRL 55
            NQ P        Q  NT    + +HA+ +K+  +  S +   LI  YS    L ++  +
Sbjct: 42  FNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNV 101

Query: 56  FNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115
           F+    P      A+I+    +   + +        +     N  T     K C  L   
Sbjct: 102 FDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDD 161

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
            + G+ +   +++   H   + GS++V+F  +     +A+KVFD + E+DVVC+ ++I G
Sbjct: 162 EV-GMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGG 220

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           + Q     +S+ +F +M    +  +   ++  L+A  +    +     H + +  G+  +
Sbjct: 221 YVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGND 280

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           V V T L+D Y   G    A  VFD   S  + I+WNAM++GY Q G       LF  L 
Sbjct: 281 VFVLTSLVDMYSNLGDTGSAALVFDSMCS-RSLISWNAMISGYVQNGMIPESYALFRRLV 339

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G   D  + ++++   C+     E+ + +    +R +LE  L   T ++    + G +
Sbjct: 340 QSGSGFDSGTLVSLIRG-CSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAI 398

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           + A  I      + +   W A+L   + +G A+ A K+
Sbjct: 399 KQAT-IVFGRMGKKNVITWTAMLVGLSQNGYAEDALKL 435


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 160/424 (37%), Positives = 254/424 (59%), Gaps = 2/424 (0%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           + A+++F+E++E++ + + AMI G+ +     ++L VF  M+  ++    + +S  L A 
Sbjct: 244 EEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAAC 303

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A L A++Q R IH +   +    + ++GT L+D Y K G +  A  VF E +       W
Sbjct: 304 ANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVF-EKMEKKEVFTW 362

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NAM+ G    G     +ELF  ++ + F P+  + L VL+A  ++G+  E  +    M+ 
Sbjct: 363 NAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEE 422

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y +EPG+EHY C++  +GRAG L +AE +  +MP EP AAVW ALL     HG  ++  
Sbjct: 423 VYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGE 482

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           ++GK L+++ P +   Y +++N+ +  GRWD+VA VRK+MK+R V+   G S I+  G V
Sbjct: 483 RVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVV 542

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F  GD  H + ++IY  L  +++  +  G+ P   ++L ++ + EK   L YHSEKLA
Sbjct: 543 HEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLA 602

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL++  P G T+ +VKNLR+C DCH +FK IS+V +REI+VRD  RYH F  G+C+C
Sbjct: 603 IAFGLINTKP-GTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSC 661

Query: 572 GDLW 575
            D W
Sbjct: 662 KDFW 665



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 167/380 (43%), Gaps = 54/380 (14%)

Query: 21  VHARALKSSQ-ADRSIYNNLITNYSKSNL--LSYSLRLFNHIPSPNIVSWTALISA--HS 75
           VHA AL++    D  +   L+  Y+  +   L+++L++F ++P+PN+  +  +I     +
Sbjct: 49  VHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQN 108

Query: 76  NSPLS--LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           N P       +  M+ H      PN+ T  +LFK C + + A   G+ +H+  +K  L  
Sbjct: 109 NEPCKAICCYYKMMIAHAR----PNKFTYPTLFKAC-TAAEAAEEGVQVHAHVIKQGLSG 163

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                SA +  Y  F   + A+++  E    DV+C+ AMI G+ +   +  +  +F  M 
Sbjct: 164 DVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSME 223

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             +VGS                                   NV+V      G  K G++ 
Sbjct: 224 DKNVGSW----------------------------------NVMV-----SGMAKCGMIE 244

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +AR +F+E +   N I+W+AM+ GY + G     LE+F++++     P ++   +VL A 
Sbjct: 245 EARELFNE-MKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAAC 303

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            N G A +  +WI                T L+    + GRL+ A  +   M  + +   
Sbjct: 304 ANLG-ALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKME-KKEVFT 361

Query: 374 WRALLSFSAIHGKADMASKM 393
           W A++    +HG+A+ A ++
Sbjct: 362 WNAMICGLGMHGRAEDAIEL 381



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 122/267 (45%), Gaps = 10/267 (3%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
           A+ L  S  D+++  +N +++  +K  ++  +  LFN +   N +SW+A+I  +      
Sbjct: 215 AKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYY 274

Query: 80  --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             +L +F  M R       P +  L+S+   CA+L  A   G  +H+     S       
Sbjct: 275 KEALEVFNVMQRE---EIRPRKFVLSSVLAACANLG-ALDQGRWIHAYVNNNSNSFDAVL 330

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+ALV  Y++    D A  VF+++ +++V  + AMI G   + R  D++ +F  M+    
Sbjct: 331 GTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKF 390

Query: 198 GSTMYCVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                 + G L A A    + E  R+ +    V G++  +     ++D  G+AG++ +A 
Sbjct: 391 RPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAE 450

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGD 283
            V        ++  W A++    + GD
Sbjct: 451 EVMYSMPMEPSAAVWGALLGACRKHGD 477



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 159/375 (42%), Gaps = 30/375 (8%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS--RFRSPDNAK 155
           +Q+T+  L  T +S S   L    +H+++L+       +    LV  Y+   F + + A 
Sbjct: 27  SQKTILDLLNTKSSTSLHHL--KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFAL 84

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           KVF+ +   +V  +  +I G  QN+    ++  +  M  +      +      +A     
Sbjct: 85  KVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAE 144

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A E+   +H H +  GL  +V + +  I  YG  G V  ARR+  E+ +  + I +NAM+
Sbjct: 145 AAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNS-DVICFNAMI 203

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
            GY + G+     ELF  +E +       S+  +++ +   G+  E+ +    MK + ++
Sbjct: 204 DGYLKCGEVEAAKELFWSMEDKNVG----SWNVMVSGMAKCGMIEEARELFNEMKEKNEI 259

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE---PDAAVWRALLSFSAIHGKADMASK 392
                 ++ +I    + G  ++A  +   M  E   P   V  ++L+  A  G  D    
Sbjct: 260 S-----WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRW 314

Query: 393 MGKRL-IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           +   +  + N +D      + ++ +  GR D   +V + M+ + V      +W       
Sbjct: 315 IHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEV-----FTW------- 362

Query: 452 HVFLAGDRMHERTED 466
           +  + G  MH R ED
Sbjct: 363 NAMICGLGMHGRAED 377


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 181/549 (32%), Positives = 297/549 (54%), Gaps = 9/549 (1%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSM 87
           A+  + +NL   YSKS LL  + R+F+ +P  + V+WTA+I  ++   N   ++  F  M
Sbjct: 152 AELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDM 211

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
            R   +    +Q  L S+      L   +L   ++HS  +K     +    +AL   Y++
Sbjct: 212 RREGLVG--ADQHVLCSVLSASGGLKDGWL-ARAIHSCVMKSGFEQEVAVRNALTDMYAK 268

Query: 148 FRSPDNAKKVFD-EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
               DNA +V   +    +VV   ++I G+ +   +  +L +F ++R   V    +  S 
Sbjct: 269 AADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSS 328

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            ++  A  A +EQ   +H   + + L  +  V + L+D YGK G++S + ++F E +   
Sbjct: 329 MIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKE-IEYH 387

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
             IAWNA +   AQ G     +  F  +   G  P+  +F+++LTA  +AGL  E  K+ 
Sbjct: 388 TDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYF 447

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             MK  + +EP  EHY+C+I   GRAGRL++AE+    MP +P+A  W +LL    + G 
Sbjct: 448 YSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGN 507

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++       ++ + P +   +V ++ + + +G+W++V  VRK+M+D R++K  G SW++
Sbjct: 508 KELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVD 567

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
              K HVF + D  H + E IY KL EL E  +  GYVP    +  N+ D  K+  L YH
Sbjct: 568 SNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYH 627

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SE++A+AF L+S  P  K + + KNLRIC DCH + K+IS+V  R+I+VRD +R+H F+ 
Sbjct: 628 SERIAVAFALIS-MPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVK 686

Query: 567 GSCTCGDLW 575
           G C+CGD W
Sbjct: 687 GGCSCGDYW 695



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 215/476 (45%), Gaps = 32/476 (6%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R +HAR + S  A  S +  N+LIT YS    +  ++RLF+ +P PN+VSWT L+S  + 
Sbjct: 37  RCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQ 96

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           + +   +L  F SM R      +P Q  L+S  +  A+   A   G  LH + ++L    
Sbjct: 97  NSMHRDALAAFSSMCR---AGLVPTQFALSSAARA-AAALAARHAGAQLHCVGVRLGFDA 152

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
           + F  S L   YS+      A +VFD++ ++D V + AMI G+A+N  L  ++  F DMR
Sbjct: 153 ELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMR 212

Query: 194 SSD-VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
               VG+  + +   L A+  L      R IH   + SG ++ V V   L D Y KA  +
Sbjct: 213 REGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADM 272

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +A RV   +   LN ++  +++ GY +       L +F  L  +G  P+E++F +++  
Sbjct: 273 DNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKG 332

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
                L  E    +    ++  L       + L+   G+ G +  + ++   + +  D A
Sbjct: 333 CAMQALL-EQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIA 391

Query: 373 VWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
            W A ++  A HG    A +   R+    I P +   +V +    S  G  DE  +    
Sbjct: 392 -WNAAINVLAQHGHGREAIRAFDRMTSSGIRP-NHITFVSLLTACSHAGLVDEGLKYFYS 449

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
           MKD           IE KG+ +  +          D+Y +   L E  + +G +PV
Sbjct: 450 MKDHH--------GIEPKGEHYSCII---------DMYGRAGRLDEAEKFIGEMPV 488



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 13/266 (4%)

Query: 102 LASLFKTCASLSHAFLFGLSLHS-LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           LA+  ++C       L G  LH+ L L  +     F  + L+  YS      +A ++FD 
Sbjct: 20  LAAPLQSCGRAGDLRL-GRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDA 78

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           +   ++V +  ++ G  QNS   D+L+ F+ M  + +  T + +S A RAAA LAA    
Sbjct: 79  MPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAG 138

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
             +H   V  G D  + V + L D Y K+G++ +A RVFD+ +   +++AW AM+ GYA+
Sbjct: 139 AQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQ-MPQKDAVAWTAMIDGYAK 197

Query: 281 QGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
            G+    +  F  +   G    D++   +VL+A       G  + W+ R      ++ G 
Sbjct: 198 NGNLEAAVIAFRDMRREGLVGADQHVLCSVLSA-----SGGLKDGWLARAIHSCVMKSGF 252

Query: 340 EHYTCLISAM----GRAGRLEDAERI 361
           E    + +A+     +A  +++A R+
Sbjct: 253 EQEVAVRNALTDMYAKAADMDNAARV 278


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 178/549 (32%), Positives = 295/549 (53%), Gaps = 10/549 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLS 86
           + D  + N ++  + K  L+  + +LF+ +P  ++ SW  ++       N   +  +FL 
Sbjct: 150 EPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLC 209

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M +          RT A++ +  A L      G  +HS +LK  + D  F   AL+  YS
Sbjct: 210 MWKEFNDG---RSRTFATMIRASAGLG-LVQVGKQIHSCALKRGVGDDHFVSCALIDMYS 265

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +  S ++A  VFD++ E+  V + ++I  +A +    ++LS++ +MR S      + +S 
Sbjct: 266 KCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISI 325

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            +R  A LA++E  +  H   V  G   +++  T L+D Y K G + DAR VF+  +   
Sbjct: 326 VIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNR-MRHK 384

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N I+WNA++AGY   G     +E+F  +   G  P   +FLAVL+A   +GL+    +  
Sbjct: 385 NVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIF 444

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             MK  +K++P   HY C+I  +GR   L++A  +    PF+P A +W ALL+   +H  
Sbjct: 445 YSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKN 504

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++     ++L  + P     Y+++ N+ +  G+  E A + + +K + +R     SW+E
Sbjct: 505 LELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSWVE 564

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           VK + + FL GD+ H +T++IY K+  LM E  + GY    + +L +V D E++  L YH
Sbjct: 565 VKKQPYAFLCGDKSHSQTKEIYQKVDNLMVEICKHGYAEENETLLPDV-DEEEQRILKYH 623

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+AFGL++  P    L+I +  R+C DCH + K I+ V  REIVVRD +R+H F N
Sbjct: 624 SEKLAIAFGLIN-TPHWTPLQITQGHRVCGDCHSAIKLIAMVTGREIVVRDASRFHHFRN 682

Query: 567 GSCTCGDLW 575
           GSC+CGD W
Sbjct: 683 GSCSCGDYW 691



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 9/196 (4%)

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           VG++ Y     + A   L ++   + +  + + SG + ++ V   ++  + K G++ DAR
Sbjct: 116 VGASTY--DALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDAR 173

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           ++FDE +   +  +W  M+ G    G+ S    LF  +          +F  ++ A    
Sbjct: 174 KLFDE-MPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGL 232

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHY-TC-LISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           GL  +  K I    ++  +  G +H+ +C LI    + G +EDA  +   MP E     W
Sbjct: 233 GLV-QVGKQIHSCALKRGV--GDDHFVSCALIDMYSKCGSIEDAHCVFDQMP-EKTTVGW 288

Query: 375 RALLSFSAIHGKADMA 390
            ++++  A+HG ++ A
Sbjct: 289 NSIIASYALHGYSEEA 304


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 183/595 (30%), Positives = 307/595 (51%), Gaps = 35/595 (5%)

Query: 13  NTSTDPRIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
            T +  +I+HA  +++    D    + LI+     NLL Y+ ++F  I +PN+  + + I
Sbjct: 26  TTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFI 85

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
              S S      F   ++      +P+  T   L K C     +   G+  H   ++   
Sbjct: 86  RGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQ-KGSLDMGIQAHGQIIRHGF 144

Query: 132 HDKPFCGSALVHFYSRF-----------------------------RSPD--NAKKVFDE 160
               +  ++LV  YS                               +S D  +A+K+FD+
Sbjct: 145 DSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDK 204

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           + E+++V +  MI G+A+NS    ++ ++  ++S  V +    +   + + A L A+E  
Sbjct: 205 MPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELG 264

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
              H + + + +  N+I+GT L+D Y + G +  A  VFD+ L   ++++W  ++AG+A 
Sbjct: 265 ERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQ-LPGRDALSWTTLIAGFAM 323

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G     LE F  +E  G  P E +F AVL+A  + GL     +  E MK  Y++EP LE
Sbjct: 324 HGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLE 383

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           HY C++  +GRAG+L +AE+    MP +P+A +W ALL    IH  +++A + GK LI++
Sbjct: 384 HYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIEL 443

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
            P     YV+++N+ +   +W+ V  +R++MK+R V K  G +  E+ GKVH F  GD+ 
Sbjct: 444 KPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKT 503

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGA 520
           H   + I     E++ +    GY    D+ L ++ + EK   +  HSEKLA+A+ ++   
Sbjct: 504 HPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTK 563

Query: 521 PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
                +RIVKNLR+C DCH + K IS+V ERE++VRD NR+H F  G+C+C D W
Sbjct: 564 GH-DPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 178/565 (31%), Positives = 300/565 (53%), Gaps = 9/565 (1%)

Query: 15  STDPRIVHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           S++ + +H  + K   A D    N L+  YS    L  + ++F+ +    +VSW  +I  
Sbjct: 101 SSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGV 160

Query: 74  HS--NSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           H+  + P  ++ +F  M++   +   PN+ TL ++   CA      +    +H    +  
Sbjct: 161 HAQWDQPNEAVRLFDRMMKSENVK--PNEVTLVNVLTACARARDLAMVK-RIHEYIDEHG 217

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                   + L+  Y +      A+ +FD+ +E+++  +  MI G  ++S   ++L +F 
Sbjct: 218 FGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFR 277

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           +M++  +      ++  L A   L A+E  + +H +     +D +V +GT L+D Y K G
Sbjct: 278 EMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCG 337

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A +VF E +   + + W A++ G A  G     L+ F  + ++G  PD  +F+ VL
Sbjct: 338 SIETAIQVFHE-MPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVL 396

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A  +AG   E       M   Y ++P +EHY  L+  +GRAGR+ +AE +  +MP  PD
Sbjct: 397 AACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPD 456

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             V   LL    IHG  + A +  K+L++I+PY    YV+++N+     +W+E    R++
Sbjct: 457 QFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTREL 516

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           M +R +RK  G S IEV G VH F+ GD  H ++ +I   L +++ + +  GYVP   E+
Sbjct: 517 MAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEV 576

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L ++ + EK   L  HSEKLA+AFGL+S +  G  +R+VKNLRIC DCH + K IS++  
Sbjct: 577 LFDMAEEEKETELSLHSEKLAIAFGLLSTSV-GTPIRVVKNLRICSDCHSATKLISKLYN 635

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REI+VRD NR+H F +G+C+C   W
Sbjct: 636 REIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 8/348 (2%)

Query: 44  SKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLA 103
            +S  L Y+  +F+ IP+P   +  ++I   ++  L     L          +P++ T  
Sbjct: 33  QESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFP 92

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           SLFK+C + S     G  +H  S KL      +  + L++ YS      +A+KVFD++ +
Sbjct: 93  SLFKSCRNSSE----GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMED 148

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFAD-MRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           + VV +  MI   AQ  +  +++ +F   M+S +V      +   L A A    +   + 
Sbjct: 149 KTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKR 208

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           IH +    G  R+V++ T L+D Y K G V  AR +FD+     N  +WN M+ G+ +  
Sbjct: 209 IHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEK-NLFSWNIMINGHVEDS 267

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
           +    L LF  ++ +G   D+ +  ++L A  + G A E  KW+     + +++  +   
Sbjct: 268 NYEEALLLFREMQTKGIKGDKVTMASLLLACTHLG-ALELGKWLHAYIKKQRIDVDVALG 326

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           T L+    + G +E A ++   MP E D   W AL+   A+ G+A+ A
Sbjct: 327 TALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTALILGLAMCGQAENA 373


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 199/587 (33%), Positives = 305/587 (51%), Gaps = 35/587 (5%)

Query: 19  RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAH 74
           R VHA  LK     A+  + + L+  Y+ +  +S++ R+F+ +P     +  W A+I  +
Sbjct: 280 REVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGY 339

Query: 75  SN----SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           +        ++ +F  M         P++ T+A +   CA  S  F    ++H   +K  
Sbjct: 340 AQHGGMDEEAIELFSRM--EAEAGCAPSETTMAGVLPACAR-SEVFTGKEAVHGYVVKRD 396

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           +    F  +AL+  Y+R    D A  +F  I  RD+V +  +I G      + ++  +  
Sbjct: 397 MASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVR 456

Query: 191 DMR---SSDVGSTMY-----CVSGA------------LRAAAELAAMEQCRVIHGHAVVS 230
           +M+   S+  G TM       V G             L   A LAA  + + IHG+AV  
Sbjct: 457 EMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRH 516

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
            L+ ++ VG+ L+D Y K G ++ AR VFD  L   N I WN ++  Y   G     L L
Sbjct: 517 ALESDLAVGSALVDMYAKCGCLALARAVFD-RLPRRNVITWNVLIMAYGMHGLGDEALAL 575

Query: 291 FHLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
           F  +   G A P+E +F+A L A  ++GL     +  + MK  Y  EP    + C++  +
Sbjct: 576 FDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVL 635

Query: 350 GRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
           GRAGRL++A  I  +M P E   + W  +L    +H    +     +RL ++ P + S Y
Sbjct: 636 GRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHY 695

Query: 409 VIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIY 468
           V++ N+ S  G W+   EVR +M+ R V KE G SWIE+ G +H F+AG+  H  +  ++
Sbjct: 696 VLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVH 755

Query: 469 TKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRI 528
             +  L E   R GYVP    +LH+V + EK   L YHSEKLA+AFGL+  AP G T+R+
Sbjct: 756 AHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLR-APPGATIRV 814

Query: 529 VKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            KNLR+C DCHE+ K+ISR+V REIV+RDV R+H F +G+C+CGD W
Sbjct: 815 AKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 7/163 (4%)

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ--CR 221
           RD V Y ++I       R   +L    DM +    S+   VS  L A + LA       R
Sbjct: 116 RDAVSYNSLISALCLFRRWGHALDALRDMLADHEVSSFTLVS-VLLACSHLADQGHRLGR 174

Query: 222 VIHGHAVVSGL---DRNVIVGTGLIDGYGKAGIVSDARRVF-DENLSVLNSIAWNAMMAG 277
             H  A+  G     R       L+  Y + G+V DA+R+F      V + + WN M++ 
Sbjct: 175 EAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISL 234

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
             Q G     +++ + +   G  PD  +F + L A     L G
Sbjct: 235 LVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLG 277


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 303/559 (54%), Gaps = 6/559 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VHA A+K    +D  I N L+  Y K   +  S R+F+ +   + VSWT +I+ ++ S
Sbjct: 385 REVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQS 444

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                               +   + S+ + C+ L    L    +HS +++  L D    
Sbjct: 445 SRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLK-QVHSYAIRNGLLDLIL- 502

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + ++  Y        A  +F+ + ++D+V + +M+  FA+N  L +++++F  M ++ +
Sbjct: 503 KNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGI 562

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 + G L A A L+++ + + IHG  +         V + L+D Y   G ++ A +
Sbjct: 563 QPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALK 622

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VFDE     + + W AM+      G     + +F  +   G +PD  SFLA+L A  ++ 
Sbjct: 623 VFDEA-KCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSK 681

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E + +++ M  +YKL+P  EHY C++  +GR+G+ E+A +   +MP EP + VW AL
Sbjct: 682 LVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCAL 741

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    IH   ++A     +L+++ P +   YV+V+NV + +G+W+ V E+R  M ++ +R
Sbjct: 742 LGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLR 801

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG-YVPVWDEMLHNVGD 496
           K+   SWIE+   VH F A D  H  ++ I+ KLAE+ E+  R G YV     +LH+V +
Sbjct: 802 KDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSE 861

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK + L  HSE+LA++FGL+S A  G  LRI KNLR+C DCHE  K +S++ EREIVVR
Sbjct: 862 EEKIDLLHRHSERLAISFGLISTAS-GTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVR 920

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F  G+C+CGD W
Sbjct: 921 DANRFHHFSGGTCSCGDFW 939



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 184/403 (45%), Gaps = 24/403 (5%)

Query: 16  TDPRIVHARALKSSQADRS----IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
           ++ R +HA A+ +          +   L+  Y K   L  + RLF+ +P+  + SW ALI
Sbjct: 72  SEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALI 131

Query: 72  SA---HSNSPLSLNIFLSM-LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
            A      +  ++ ++ +M    P     P+  TLAS+ K C +       G  +H L++
Sbjct: 132 GACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRC-GSEVHGLAV 190

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSL 186
           K  L       +ALV  Y++    D+A +VF+ +R+ RDV  + + I G  QN   +++L
Sbjct: 191 KSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEAL 250

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
            +F  M+S       Y   G L+  AELA +   R +H   +  G + N+     L+  Y
Sbjct: 251 DLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMY 309

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            + G V  A RVF E +   + I+WN+M++ Y Q    +  ++ F  +   GF PD    
Sbjct: 310 ARCGWVDSALRVFRE-IGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACI 368

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
           +++L+A+ + G      + +    V+ +L+  L+    L+    +   +E + R+   M 
Sbjct: 369 VSLLSAVGHLGRLINGRE-VHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMR 427

Query: 367 FEPDAAVWRALLS-------FSAIHGKADMASKMGKRLIDINP 402
            + D   W  +++       +S   GK   A K G   I ++P
Sbjct: 428 IK-DHVSWTTIIACYAQSSRYSEAIGKFRTAQKEG---IKVDP 466



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 181/391 (46%), Gaps = 13/391 (3%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           R +HA  LK         N L+  Y++   +  +LR+F  I   + +SW +++S +  + 
Sbjct: 285 RELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNR 344

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           L   +++ F  M+++    F P+   + SL      L    + G  +H+ ++K  L    
Sbjct: 345 LYAEAIDFFGEMVQN---GFNPDHACIVSLLSAVGHLGR-LINGREVHAYAVKQRLDSDL 400

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              + L+  Y +  S + + +VFD +R +D V +  +I  +AQ+SR  +++  F   +  
Sbjct: 401 QIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKE 460

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +      +   L A + L ++   + +H +A+ +GL  ++I+   +ID YG+ G V  A
Sbjct: 461 GIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYA 519

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             +F E L   + + W +M+  +A+ G     + LF  +   G  PD  + + +L A+  
Sbjct: 520 LNIF-EMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAI-- 576

Query: 316 AGLAGESE-KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           AGL+  ++ K I    +R K        + L+      G +  A ++      + D  +W
Sbjct: 577 AGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCK-DVVLW 635

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDD 405
            A+++ + +HG    A  + KR+++     D
Sbjct: 636 TAMINATGMHGHGKQAIYIFKRMLETGVSPD 666



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 185/428 (43%), Gaps = 19/428 (4%)

Query: 21  VHARALKSSQADRS--IYNNLITNYSKSNLLSYSLRLFNHI-PSPNIVSWTALISAHSNS 77
           VH  A+KS   DRS  + N L+  Y+K  LL  +LR+F  +    ++ SW + IS    +
Sbjct: 185 VHGLAVKSG-LDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQN 243

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            + L       R  +  F  N  T   + + CA L+     G  LH+  LK        C
Sbjct: 244 GMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQ-LNHGRELHAALLKCGTEFNIQC 302

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + LV  Y+R    D+A +VF EI ++D + + +M+  + QN    +++  F +M  +  
Sbjct: 303 NALLV-MYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGF 361

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                C+   L A   L  +   R +H +AV   LD ++ +   L+D Y K   V  + R
Sbjct: 362 NPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSAR 421

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VFD  + + + ++W  ++A YAQ    S  +  F   +  G   D     ++L A   +G
Sbjct: 422 VFDR-MRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEAC--SG 478

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTC---LISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           L   S   + +    Y +  GL        +I   G  G +  A  I   M  + D   W
Sbjct: 479 LKSIS---LLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNI-FEMLDKKDIVTW 534

Query: 375 RALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            ++++  A +G    A  +  ++++  I P D  A V +   ++G+    +  E+   + 
Sbjct: 535 TSMVNCFAENGLLHEAVALFGKMLNAGIQP-DSVALVGILGAIAGLSSLTKGKEIHGFLI 593

Query: 433 DRRVRKEG 440
             +   EG
Sbjct: 594 RGKFPVEG 601


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 199/577 (34%), Positives = 316/577 (54%), Gaps = 27/577 (4%)

Query: 5    LNQQPQPQNTSTDPRI--VHARALKSSQADRSIYNNLITN-----YSKSNLLSYSLRLFN 57
            LN  P   + S  P +  +H  +LK       +YN L+ N     Y+K   LSY+ R+F+
Sbjct: 754  LNAVPVCFHESFLPSLKELHCYSLKQ----EFVYNELVANAFVASYAKCGSLSYAQRVFH 809

Query: 58   HIPSPNIVSWTALISAH--SNSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSH 114
             I S  + SW ALI  H  SN P LSL+  L M        LP+  T+ SL   C+ L  
Sbjct: 810  GIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM---KISGLLPDSFTVCSLLSACSKLK- 865

Query: 115  AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
            +   G  +H   ++  L    F   +++  Y         + +FD + ++ +V +  +I 
Sbjct: 866  SLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVIT 925

Query: 175  GFAQNSRLVDSLSVFADMRSSDV---GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
            G+ QN     +L VF  M    +   G +M  V GA    + L ++   R  H +A+   
Sbjct: 926  GYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA---CSLLPSLRLGREAHAYALKHL 982

Query: 232  LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
            L+ +  +   LID Y K G ++ + +VF+  L   ++ +WNAM+ GY   G     ++LF
Sbjct: 983  LEDDAFIACSLIDMYAKNGSITQSSKVFN-GLKEKSTASWNAMIMGYGIHGLAKEAIKLF 1041

Query: 292  HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
              ++  G  PD+ +FL VLTA  ++GL  E  +++++MK  + L+P L+HY C+I  +GR
Sbjct: 1042 EEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGR 1101

Query: 352  AGRLEDAERI-AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
            AG+L+ A R+ A  M  E D  +W++LLS   IH   +M  K+  +L ++ P     YV+
Sbjct: 1102 AGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVL 1161

Query: 411  VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
            ++N+ +G+G+W++V +VR+ M +  +RK+ G SWIE+  KV  F+ G+R  +  E+I + 
Sbjct: 1162 LSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSL 1221

Query: 471  LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
             + L  +  ++GY P    + H++ + EK E L  HSEKLAL +GL+  +  G T+R+ K
Sbjct: 1222 WSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTS-EGTTIRVYK 1280

Query: 531  NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
            NLRIC DCH + K IS+V+EREIVVRD  R+H F NG
Sbjct: 1281 NLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNG 1317



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D  +   +IT Y+       S  +F+ + S N+  W A+IS++S + L    L  F+ M+
Sbjct: 474 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 533

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
              T   LP+  T   + K CA +S   + GL++H L +K  L +  F G+ALV FY   
Sbjct: 534 S--TTDLLPDHFTYPCVIKACAGMSDVGI-GLAVHGLVVKTGLVEDVFVGNALVSFYGTH 590

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
               +A ++FD + ER++V + +MI  F+ N    +S  +  +M   +           L
Sbjct: 591 GFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATL 650

Query: 209 RAAAELAAMEQ----CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
                + A E+     + +HG AV   LD+ +++   L+D Y K G +++A+ +F  N +
Sbjct: 651 VTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMN-N 709

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELF 291
             N ++WN M+ G++ +GD     ++ 
Sbjct: 710 NKNVVSWNTMVGGFSAEGDTHGTFDVL 736



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 176/386 (45%), Gaps = 13/386 (3%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH   +K+    D  + N L++ Y     ++ +L+LF+ +P  N+VSW ++I   S++  
Sbjct: 564 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 623

Query: 80  SLNIFL----SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           S   FL     M  +   +F+P+  TL ++   CA      L G  +H  ++KL L  + 
Sbjct: 624 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL-GKGVHGWAVKLRLDKEL 682

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +AL+  YS+     NA+ +F     ++VV +  M+ GF+       +  V   M + 
Sbjct: 683 VLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAG 742

Query: 196 --DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             DV +    +  A+      + +   + +H +++      N +V    +  Y K G +S
Sbjct: 743 GEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLS 802

Query: 254 DARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            A+RVF    S  +NS  WNA++ G+AQ  D    L+    +++ G  PD ++  ++L+A
Sbjct: 803 YAQRVFHGIRSKTVNS--WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 860

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            C+   +    K +    +R  LE  L  Y  ++S     G L   + +  AM  +    
Sbjct: 861 -CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAME-DKSLV 918

Query: 373 VWRALLSFSAIHGKADMASKMGKRLI 398
            W  +++    +G  D A  + ++++
Sbjct: 919 SWNTVITGYLQNGFPDRALGVFRQMV 944



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 168/383 (43%), Gaps = 21/383 (5%)

Query: 21   VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSN 76
            VH  A+K       + NN L+  YSK   ++ +  +F    + N+VSW  ++   SA  +
Sbjct: 669  VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD 728

Query: 77   SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS-LHSLSLKLSLHDKP 135
            +  + ++   ML         ++ T+ +    C     +FL  L  LH  SLK       
Sbjct: 729  THGTFDVLRQMLAGGE-DVKADEVTILNAVPVC--FHESFLPSLKELHCYSLKQEFVYNE 785

Query: 136  FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
               +A V  Y++  S   A++VF  IR + V  + A+I G AQ++    SL     M+ S
Sbjct: 786  LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 845

Query: 196  DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
             +    + V   L A ++L ++   + +HG  + + L+R++ V   ++  Y   G +   
Sbjct: 846  GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 905

Query: 256  RRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA- 312
            + +FD  E+ S+   ++WN ++ GY Q G     L +F  + + G      S + V  A 
Sbjct: 906  QALFDAMEDKSL---VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 962

Query: 313  --LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
              L +  L  E+  +     +++ LE        LI    + G +  + ++   +  E  
Sbjct: 963  SLLPSLRLGREAHAY----ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKS 1017

Query: 371  AAVWRALLSFSAIHGKADMASKM 393
             A W A++    IHG A  A K+
Sbjct: 1018 TASWNAMIMGYGIHGLAKEAIKL 1040



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 9/182 (4%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDR---NVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           L+A+ +   +E  R IH   +VSG  R   + ++ T +I  Y   G   D+R VFD  L 
Sbjct: 446 LQASGKRKDIEMGRKIH--QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA-LR 502

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
             N   WNA+++ Y++      VLE F  ++      PD +++  V+ A       G   
Sbjct: 503 SKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 562

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
             +  + V+  L   +     L+S  G  G + DA ++   MP E +   W +++   + 
Sbjct: 563 A-VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMP-ERNLVSWNSMIRVFSD 620

Query: 384 HG 385
           +G
Sbjct: 621 NG 622


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 263/448 (58%), Gaps = 3/448 (0%)

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
           K+ L  +   G++LV+ Y R  S  NA+ VF+ I  +D + + A++  +AQ+    ++L 
Sbjct: 4   KVGLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALE 63

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           +F  M+   V +        L A A  +A+   RVIH + V +GLDR +IV T L++ Y 
Sbjct: 64  IFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYA 123

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G + +AR VFD+ +  ++ +AW A++AG AQ G      +L   +E+ G  P+  +FL
Sbjct: 124 KCGKLVEAREVFDQ-MEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFL 182

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           +++ A  ++G   E+      M   +   P  EH+ C+I  +GR GRLE+A+ +   MPF
Sbjct: 183 SLVFACSHSGYLDEARDCFIAM-ADHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPF 241

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           EP    W  +LS   +      A    ++  +I P   SAY++++N+ + + RWD+V +V
Sbjct: 242 EPGLTAWLTMLSACRLQKDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAALERWDDVKKV 301

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           R++M+ R V+KE G S IEVK ++H F A ++ H + + IY +L +L  E +  GYVP  
Sbjct: 302 RRLMERRGVKKEPGLSCIEVKNRLHEFGAANKSHPQKDLIYEELRKLTLEIKEAGYVPDT 361

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
             +LHNV +  K+  L++HSE+LA+ +GL++  P G +L +V NLR+C DCH +FKYIS 
Sbjct: 362 SLVLHNVDEETKQATLFHHSERLAVVYGLIN-TPPGTSLCVVNNLRMCSDCHTAFKYIST 420

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +  REIVVRD NR+H F  G C+C D W
Sbjct: 421 ISNREIVVRDANRFHTFATGGCSCKDYW 448



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 35/327 (10%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           +A+  +  +L+  Y + + L  +  +F  IP  + ++W A+++A++       +L IF  
Sbjct: 8   EAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIFQR 67

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M +    +      T  S+ + CAS S A   G  +H   +   L  +    +ALV+ Y+
Sbjct: 68  MQQEGVKT---GSATFISVLEACASTS-ALALGRVIHQNLVANGLDRELIVATALVNMYA 123

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +      A++VFD++   DVV + A++ G AQ+  + +S  +   M    +         
Sbjct: 124 KCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLS 183

Query: 207 ALRAAAELAAMEQCR------VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
            + A +    +++ R        HG   +    R V      ID  G+ G + +A+ V D
Sbjct: 184 LVFACSHSGYLDEARDCFIAMADHGFFPLPEHFRCV------IDLLGRGGRLEEAQEVID 237

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQ-STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
                    AW  M++    Q D     +      E+    P  Y  ++ L A       
Sbjct: 238 TMPFEPGLTAWLTMLSACRLQKDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAAL----- 292

Query: 320 GESEKWIERMKVR-------YKLEPGL 339
              E+W +  KVR        K EPGL
Sbjct: 293 ---ERWDDVKKVRRLMERRGVKKEPGL 316


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 181/596 (30%), Positives = 307/596 (51%), Gaps = 39/596 (6%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           + R +HA  + +   +D  +   LI  Y K      +  +F+ +   ++VSW  +I  + 
Sbjct: 225 EGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +           +     F   + T  S+   C+S+  A   G  +HS  L+  L  + 
Sbjct: 285 QNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVK-ALAQGRLVHSHILERGLDSEV 343

Query: 136 FCGSALVHFYSR----------FRSPDN------------------------AKKVFDEI 161
              +ALV+ Y++          F +  N                        A+KVFD +
Sbjct: 344 AVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRL 403

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSDVGSTMYCVSGALRAAAELAAMEQC 220
             RD +C+ AMI  + QN   V ++ +F +M  ++ +          L A A L  + + 
Sbjct: 404 GSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV 463

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           + +H     S L+ NV+V   LI+ Y + G + +A R+F         ++W AM+A ++Q
Sbjct: 464 KALHAQISESELESNVVVTNTLINMYARCGSLEEAERLF-AAAKEKTVVSWTAMVAAFSQ 522

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G  +  L+LF  +++ G  PD+ ++ ++L    + G   +  ++   M   + L P  +
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTAD 582

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           H+  ++  +GR+GRL DA+ +  +MPFEPD   W   L+   IHGK ++     +R+ ++
Sbjct: 583 HFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL 642

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
           +P   + Y+ ++N+ +  G W++VA VRK M++R ++K  G S+IEV GK+H F +G + 
Sbjct: 643 DPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKY 702

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGA 520
           H RT++I  +L  L       GYVP    +LH+V + EK   L YHSEK+A+AFGLVS  
Sbjct: 703 HPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSR 762

Query: 521 PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF-LNGSCTCGDLW 575
             G+ +R+VKNLR+C DCH + K+I+R+  R+I++RD NR+HRF  +G C+CGD W
Sbjct: 763 GSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 185/384 (48%), Gaps = 15/384 (3%)

Query: 17  DPRIVHARALKSSQADRS--IYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALIS 72
           + R +H R ++ S+ +R   + N LI+ Y K + L  +  +F  +     N+VSW A+I+
Sbjct: 25  EGRALHER-IRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIA 83

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           A++ +  S    +   R        +  T  S+   C+SL+     G  +H+      L 
Sbjct: 84  AYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ----GREIHNRVFYSGLD 139

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                 +ALV  Y+RF S  +AK++F  ++ RD   + A+I+  +Q+     +L +F +M
Sbjct: 140 SFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM 199

Query: 193 RSS-DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           +      ST Y     +   +    + + R IH   V +G D +++V T LI+ YGK G 
Sbjct: 200 KCDMKPNSTTYI--NVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGS 257

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
             +AR VFD+ +   + ++WN M+  Y Q GD    LEL+  L+M GF   + +F+++L 
Sbjct: 258 SHEAREVFDK-MKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILG 316

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A C++  A    + +    +   L+  +   T L++   + G LE+A ++  AM    DA
Sbjct: 317 A-CSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDA 374

Query: 372 AVWRALLSFSAIHGKADMASKMGK 395
             W  L+   A +G    A K  K
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARK 398



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 194/448 (43%), Gaps = 54/448 (12%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H R   S   + +S+ N L+T Y++   +  + R+F  + + +  SW A+I AHS S
Sbjct: 127 REIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQS 186

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRT---LASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
                +L IF  M         PN  T   + S F T   L      G  +H+  +    
Sbjct: 187 GDWSGALRIFKEM----KCDMKPNSTTYINVISGFSTPEVLPE----GRKIHAEIVANGF 238

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                  +AL++ Y +  S   A++VFD++++RD+V +  MI  + QN    ++L ++  
Sbjct: 239 DSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQK 298

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           +       T       L A + + A+ Q R++H H +  GLD  V V T L++ Y K G 
Sbjct: 299 LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGS 358

Query: 252 VSDARRVFD---------------------------------ENLSVLNSIAWNAMMAGY 278
           + +AR+VF+                                 + L   ++I WNAM+  Y
Sbjct: 359 LEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTY 418

Query: 279 AQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
            Q G     +++F  +    G  PD  +F+AVL A  + G   E  K +       +LE 
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV-KALHAQISESELES 477

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR- 396
            +     LI+   R G LE+AER+  A   E     W A+++  + +G+   A  + +  
Sbjct: 478 NVVVTNTLINMYARCGSLEEAERL-FAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEM 536

Query: 397 -LIDINPYDDSAYVIVANVLSGVGRWDE 423
            L  + P DD  Y  +  V +  G  ++
Sbjct: 537 DLEGVKP-DDVTYTSILFVCTHGGSLEQ 563



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 19/216 (8%)

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYA 279
           R +H     S  +R+ +VG  LI  YGK   + DAR VF+  +    N ++WNAM+A YA
Sbjct: 27  RALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYA 86

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G  +  L L+  + ++G   D  +F++VL A  +     E        +V Y    GL
Sbjct: 87  QNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGREIHN-----RVFY---SGL 138

Query: 340 EHYTCLISAM----GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           + +  L +A+     R G + DA+R+  ++    D   W A++   +  G    A ++ K
Sbjct: 139 DSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETSWNAVILAHSQSGDWSGALRIFK 197

Query: 396 RL-IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
            +  D+ P + + Y+   NV+SG    + + E RK+
Sbjct: 198 EMKCDMKP-NSTTYI---NVISGFSTPEVLPEGRKI 229


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 191/553 (34%), Positives = 306/553 (55%), Gaps = 20/553 (3%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS-- 77
           +H  +LK     + S+ N L+T Y+++  L+   ++F+ +P  + VSW ++I A ++S  
Sbjct: 157 IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSER 216

Query: 78  --PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG---LSLHSLSLKLSLH 132
             P ++  FL+ LR         Q+     F +  S   +  FG     +H L+LK ++ 
Sbjct: 217 SLPEAVACFLNALR-------AGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIA 269

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           D+    +AL+  Y +    D  +K+F  + ER D V + +MI G+  N  L  +L +   
Sbjct: 270 DEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWF 329

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M  +      +  +  L A A +A +E+   +H  +V + L+ +V+VG+ L+D Y K G 
Sbjct: 330 MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGR 389

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVL 310
           +  A R F+  + V NS +WN+M++GYA+ G     L+LF  +++ G   PD  +F+ VL
Sbjct: 390 LDYALRFFN-TMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVL 448

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  +AGL  E  K  E M   Y L P +EH++C+   +GRAG L+  E     MP +P+
Sbjct: 449 SACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPN 508

Query: 371 AAVWRALLSFS--AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
             +WR +L     A   KA++  K  + L  + P +   YV++ N+ +  GRW+++ + R
Sbjct: 509 VLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKAR 568

Query: 429 KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
           K MKD  V+KE G SW+ +K  VH+F+AGD+ H  T+ IY KL EL  +    GYVP   
Sbjct: 569 KKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKELNRKMRDAGYVPQTG 628

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
             L+++    K E L YHSEKLA+AF L +       +RI+KNLR+C DCH +FKYIS++
Sbjct: 629 FALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKI 688

Query: 549 VEREIVVRDVNRY 561
             R+I++RD NRY
Sbjct: 689 EGRQIILRDSNRY 701



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 176/427 (41%), Gaps = 42/427 (9%)

Query: 19  RIVHARALKSSQAD--RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R VH   + +   D    I N L+  Y+K   ++ + R+F  +   + VSW ++I+    
Sbjct: 53  REVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQ 112

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +     ++  + SM RH     LP   TL S   +CASL  A L G  +H  SLKL +  
Sbjct: 113 NGCFIEAVERYQSMRRH---EILPGSFTLISSLSSCASLKWAKL-GQQIHGESLKLGIDL 168

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                +AL+  Y+     +  +K+F  + E D V + ++I   A + R            
Sbjct: 169 NVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSER------------ 216

Query: 194 SSDVGSTMYCVSGALRAAAELAAM---------------EQCRVIHGHAVVSGLDRNVIV 238
              +   + C   ALRA  +L  +               E  + IHG A+   +      
Sbjct: 217 --SLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATT 274

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
              LI  YGK G +    ++F       + + WN+M++GY      +  L+L   +   G
Sbjct: 275 ENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTG 334

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
              D + +  VL+A  +     E    +    VR  LE  +   + L+    + GRL+ A
Sbjct: 335 QRLDSFMYATVLSAFASVATL-ERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYA 393

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM--GKRLIDINPYDDSAYVIVANVLS 416
            R    MP   ++  W +++S  A HG+ + A K+    +L    P D   +V V +  S
Sbjct: 394 LRFFNTMPVR-NSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACS 452

Query: 417 GVGRWDE 423
             G  +E
Sbjct: 453 HAGLLEE 459



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 102/211 (48%), Gaps = 8/211 (3%)

Query: 173 IVGFAQNSRLVDSLSVFADMRSS-DVGSTMYCV---SGALRAAAELAAMEQCRVIHGHAV 228
           +VG  +     ++  +F DM S  DV    Y +   S    + AE   +++ R +HGH +
Sbjct: 1   MVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVI 60

Query: 229 VSGL-DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
            +GL D  V +G GL++ Y K G ++DARRVF   +   +S++WN+M+ G  Q G     
Sbjct: 61  TTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEK-DSVSWNSMITGLDQNGCFIEA 119

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           +E +  +      P  ++ ++ L++  +   A   ++ I    ++  ++  +     L++
Sbjct: 120 VERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQ-IHGESLKLGIDLNVSVSNALMT 178

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
                G L +  +I  +MP E D   W +++
Sbjct: 179 LYAETGYLNECRKIFSSMP-EHDQVSWNSII 208


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 180/560 (32%), Positives = 299/560 (53%), Gaps = 8/560 (1%)

Query: 20  IVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--S 75
           +V AR +     +R +  +N ++  Y++  LL  +  LF+ +P  +  SWTA+++ +   
Sbjct: 138 LVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKK 197

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           + P    +  S+++    S  PN  T++S     A++      G  +H   ++  L    
Sbjct: 198 DQPEEALVLYSLMQRVPNS-KPNIFTVSSAVAAAAAIK-CIRRGKEIHGHIVRAGLDSDE 255

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              S+L+  Y +    D A+ +FD+I ++DVV + +MI  + ++SR  +  S+F+++  S
Sbjct: 256 VLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGS 315

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                 Y  SG L A A+L   E  R +HG+    G D      + LID Y K G +  A
Sbjct: 316 CERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESA 375

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R V D      + ++  +++ GYAQ G     L+ F LL   G  PD  +F+ VL+A  +
Sbjct: 376 RHVVD-GCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTH 434

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  +  ++   +  ++ L    +HYTCL+  + R+GR E  + +   MP +P   +W 
Sbjct: 435 AGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWA 494

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ++L   + +G  D+A +  + L  I P +   YV +AN+ +  G+W+E  ++RK M++  
Sbjct: 495 SVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIG 554

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
           + K+ G SW E+K K HVF+A D  H     I   L EL ++ +  GYVP    +LH+V 
Sbjct: 555 ITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGYVPATSLVLHDVE 614

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           D +K E L YHSEKLA+AF ++S    G  +++ KNLR C DCH + K+IS++ +R+I +
Sbjct: 615 DEQKEENLVYHSEKLAVAFAILS-TEEGTAIKVFKNLRSCVDCHSAIKFISKITKRKITI 673

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD  R+H F NG C+C D W
Sbjct: 674 RDSTRFHCFENGQCSCRDYW 693



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 137/309 (44%), Gaps = 37/309 (11%)

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           ++  Y++  S  +A+KVFDE+ ERDV  +  M+ G+A+   L ++ ++F +M   D  S 
Sbjct: 128 ILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSW 187

Query: 201 MYCVSGALR--------------------------------AAAELAAMEQCRVIHGHAV 228
              V+G ++                                AAA +  + + + IHGH V
Sbjct: 188 TAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIV 247

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
            +GLD + ++ + L+D YGK G + +AR +FD+ +   + ++W +M+  Y +        
Sbjct: 248 RAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDK-DVVSWTSMIDRYFKSSRWREGF 306

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
            LF  L      P+EY+F  VL A C      E  + +     R   +P     + LI  
Sbjct: 307 SLFSELIGSCERPNEYTFSGVLNA-CADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDM 365

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
             + G +E A  +    P +PD     +L+   A +GK D A K    L+      D  +
Sbjct: 366 YTKCGNIESARHVVDGCP-KPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPD--H 422

Query: 409 VIVANVLSG 417
           V   NVLS 
Sbjct: 423 VTFVNVLSA 431



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 7/120 (5%)

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R+    ++ YC    ++  ++  A+E+ + +H H   SG    +++   ++  Y K G +
Sbjct: 81  RAKKPPASTYC--NLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSL 138

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DAR+VFDE +   +  +WN M+ GYA+ G       LF  +  R    D YS+ A++T 
Sbjct: 139 VDARKVFDE-MPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPER----DSYSWTAMVTG 193


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 167/437 (38%), Positives = 249/437 (56%), Gaps = 2/437 (0%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +AL++ Y R  S + A+KVFD +   D   +  MI    +N  L+++L +F  M    + 
Sbjct: 15  NALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLEGIP 74

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
            T   ++  L A A   A++  + IH     SG   +V+  T L+D Y K G +  + +V
Sbjct: 75  PTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKV 134

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F   +   NS++W AM+A  AQ G     LELF  + + G   D  +F+ VL A  +AGL
Sbjct: 135 FTA-METRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGL 193

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             ES ++   M   Y + P   HY   +  +GRAGRL+DAE +  +MPF P+   W+ LL
Sbjct: 194 IKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLL 253

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
           +   IH +A+ A+K+ + L  + P D  AY ++ NV +   R+ +   VRK M DR ++K
Sbjct: 254 NACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTDRGLKK 313

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
             G+S+IEVK KVH F+AGDR H   ++I  +L +L       GYVP   ++LH V + E
Sbjct: 314 VPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEE 373

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K + +  HSEKLA+AFGL++  P G  L IVKNLR+C DCH + K I++++ R IVVRD 
Sbjct: 374 KEQLIGLHSEKLAIAFGLIA-TPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDT 432

Query: 559 NRYHRFLNGSCTCGDLW 575
           +R+H F +G C+C D W
Sbjct: 433 HRFHHFEDGQCSCKDYW 449



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 132/317 (41%), Gaps = 23/317 (7%)

Query: 26  LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFL 85
           LKSS A   + N L+  Y +   L  + ++F+ +  P+  SWT +I+A + +   L    
Sbjct: 6   LKSSNA--ILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALE 63

Query: 86  SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY 145
              R       P   TLAS+   CA  S A   G  +HS       H      +AL+  Y
Sbjct: 64  LFHRMNLEGIPPTSVTLASVLNACAC-SGALKVGKQIHSRLDASGFHSSVLAQTALLDMY 122

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV---GSTMY 202
           ++  S + + KVF  +  R+ V + AMI   AQ+ +  ++L +F +M    +    +T  
Sbjct: 123 AKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFI 182

Query: 203 CVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           CV   LRA +    + E     H       +          +D  G+AG + DA  +   
Sbjct: 183 CV---LRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHS 239

Query: 262 NLSVLNSIAWNAMMAG---YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
                 ++ W  ++     ++Q    + V EL   L     AP++     +L       +
Sbjct: 240 MPFHPETVTWKTLLNACRIHSQAERATKVAELLAKL-----APEDSMAYTLL-----GNV 289

Query: 319 AGESEKWIERMKVRYKL 335
              +E++ ++M+VR  +
Sbjct: 290 YAATERYGDQMRVRKSM 306


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 188/590 (31%), Positives = 309/590 (52%), Gaps = 37/590 (6%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
            HA+ + ++     +  N +   +    LSY+ +LF+ IP P++  +  +I AHS SP S
Sbjct: 35  THAQLITTALISHPVSANKLLKLAACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHS 94

Query: 81  LNIFLSMLRHPT--LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
            +  L + R  T  L   PN+ +    F  C +       G  +   ++K+ L +  F  
Sbjct: 95  CHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGN-GLGVQEGEQVRIHAVKVGLENNVFVV 153

Query: 139 SALVHFYSR----------------------------FRSPDN---AKKVFDEIRERDVV 167
           +AL+  Y +                            +    N   AK++FD +RERDVV
Sbjct: 154 NALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVV 213

Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
            +  +I G+ Q    +++L  F  M         Y +  AL A + L A++Q + IH + 
Sbjct: 214 SWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYI 273

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
               +  N  +   +ID Y K G +  A RVF E+        WNAM+ G+A  G  +  
Sbjct: 274 GKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEA 333

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           + +F  +++   +P++ +F+A+L A  +  +  E + +   M   Y + P +EHY C++ 
Sbjct: 334 INVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVD 393

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
            + R+G L++AE +  +MP  PD A+W ALL+   I+   +   ++G+ +  ++P     
Sbjct: 394 LLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGC 453

Query: 408 YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE-GGRSWIEVKGKVHVFLAGDRMHERTED 466
           +V+++N+ S  GRW+E   +R+  +  R RK+  G S IE+KG  H FL GD+ H ++ +
Sbjct: 454 HVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSRE 513

Query: 467 IYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE-ALWYHSEKLALAFGLVSGAPRGKT 525
           IY+ L E+  + +  GYVP   E+LH++ D E +E AL  HSEKLA+AFGL++ A  G  
Sbjct: 514 IYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTA-NGTP 572

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +RIVKNLR+C DCH++ K+IS+V  R I+VRD  RYH F +G C+C D W
Sbjct: 573 IRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 137/322 (42%), Gaps = 40/322 (12%)

Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           L SL  +C S+          H+  +  +L   P   + L+   +   S   A K+FD+I
Sbjct: 19  LVSLIDSCKSMQQI----KQTHAQLITTALISHPVSANKLLKL-AACASLSYAHKLFDQI 73

Query: 162 RERDVVCYGAMIVGFAQNSRLV-DSLSVFADMRSSDVG--STMYCVSGALRAAAELAAME 218
            + D+  Y  MI   + +     +SL VF  + + D+G     Y    A  A      ++
Sbjct: 74  PQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSL-TQDLGLFPNRYSFVFAFSACGNGLGVQ 132

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF----DENLSVLNS------ 268
           +   +  HAV  GL+ NV V   LI  YGK G+V ++++VF    D +L   N+      
Sbjct: 133 EGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYV 192

Query: 269 --------------------IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
                               ++W+ ++AGY Q G     L+ FH +   G  P+EY+ ++
Sbjct: 193 GSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVS 252

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
            L A C+  +A +  KWI     + +++        +I    + G +E A R+      +
Sbjct: 253 ALAA-CSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVK 311

Query: 369 PDAAVWRALLSFSAIHGKADMA 390
               +W A++   A+HG  + A
Sbjct: 312 QKVWLWNAMIGGFAMHGMPNEA 333


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 181/572 (31%), Positives = 303/572 (52%), Gaps = 35/572 (6%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N LI  Y K   L Y+  LF  +PS N+ +WT  ++A S++       +   R       
Sbjct: 101 NLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGER 160

Query: 97  PNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           P++ T + +    A +  A +  G  +H  +    L      G+A++  Y +    D+A+
Sbjct: 161 PDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDAR 220

Query: 156 KVFDEI-------------------RER------------DVVCYGAMIVGFAQNSRLVD 184
             F+E+                   R+R            D VC+ AMI  +AQ+ R   
Sbjct: 221 AAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQ 280

Query: 185 SLSVFADMR-SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           +L ++  M  ++D+          +   AEL+A++Q R IH     +  D N++V   L+
Sbjct: 281 ALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALV 340

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
             YGK G + +A  VF  ++ + + I+WN +++ YA  G     L L+  ++++G  P E
Sbjct: 341 HMYGKCGCLDEALDVF-HSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTE 399

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            +F+ +L+A  + GL  +   +  RM+  ++++P + H+ C+I  +GR GRL +AE +  
Sbjct: 400 VTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLK 459

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           +MP + +A  W +LL     HG      +   +++D  P+    YV+++N+ +  GRW +
Sbjct: 460 SMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKD 519

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
           V ++RK+M  R V+K  G+SWIE+   VH F++GD  H + E+IY +L +++EE + LGY
Sbjct: 520 VEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGY 579

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           VP    + H++ + EK + L  HSEKLA+ +G +   P    LRIVKNLR+C DCH + K
Sbjct: 580 VPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMV-VPGKSMLRIVKNLRVCLDCHTATK 638

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++SR+  R+IVVRD  R+H F NGSC+C D W
Sbjct: 639 FMSRITGRKIVVRDAARFHLFENGSCSCRDYW 670



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 141/323 (43%), Gaps = 38/323 (11%)

Query: 103 ASLFKTCASLSHAFLFGLSLHS--LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           A+L + C + ++A      LHS  LSL  S    PF  + L+  Y +      A+++F+ 
Sbjct: 64  AALIRRCGA-ANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFES 122

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD--VGSTMYCVSGALRAAAELAAME 218
           +  R+V  +   +  F+ N    ++L  F  M  S        + V  A  A    AA++
Sbjct: 123 MPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAID 182

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE----------------- 261
           Q R IH +A +SGL  NV+VGT +I  YGK G + DAR  F+E                 
Sbjct: 183 QGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYK 242

Query: 262 -------------NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFL 307
                         +   +S+ WNAM+A YAQ G     L+L+  + +    AP + +F+
Sbjct: 243 LDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFV 302

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            V+  +C    A +  + I         +  L     L+   G+ G L++A  +  +M  
Sbjct: 303 TVID-VCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKL 361

Query: 368 EPDAAVWRALLSFSAIHGKADMA 390
           + D   W  ++S  A HG +D A
Sbjct: 362 K-DEISWNTIISSYAYHGHSDQA 383


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 172/552 (31%), Positives = 301/552 (54%), Gaps = 17/552 (3%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNI 83
           K  Q D   +N +++ Y++   ++ + RLF+  P  ++ +WTA++S ++ + +   +  +
Sbjct: 287 KMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRV 346

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F +M     +S+  N    A + +     +      +   +++            + ++ 
Sbjct: 347 FDAMPDKNAVSW--NAMMAAYVQRRMMEEAKELFDAMPCRNVA----------SWNTMLT 394

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y++    D A+ +F  + ++D V + AM+  ++Q     ++L +F +M           
Sbjct: 395 GYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSA 454

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
            +  L   A++AA+E    +H   + +G      VG  L+  Y K G + +A   F+E +
Sbjct: 455 FACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEE-M 513

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
              + ++WN M+AGYA+ G     LE+F  +      PD+ + + VL A  ++GL  +  
Sbjct: 514 EERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGI 573

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
            +   M   + +    EHYTC+I  +GRAGRL++A  +   MPFEPD+ +W ALL  S I
Sbjct: 574 SYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRI 633

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
           H  +++     +++ ++ P +   YV+++N+ +  G+W +V ++R +M +R V+K  G S
Sbjct: 634 HRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFS 693

Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
           WIEV+ KVH F  GD +H   EDIY  L +L    ++ GYV   D +LH+V + EK   L
Sbjct: 694 WIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHML 753

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
            YHSEKLA+A+G++   P G+ +R++KNLR+CRDCH +FK IS +  R I++RD NR+H 
Sbjct: 754 KYHSEKLAVAYGILK-IPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHH 812

Query: 564 FLNGSCTCGDLW 575
           F +GSC+CGD W
Sbjct: 813 FRDGSCSCGDYW 824



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 140/312 (44%), Gaps = 32/312 (10%)

Query: 21  VHARALKSSQADR----------SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
            H RA +   A+R          S YN ++  Y+ +  L  +L  F  IP P+  S+  L
Sbjct: 116 AHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTL 175

Query: 71  ISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           + A     L ++  L+ +R      +P + +++      +  +H     +SL      L+
Sbjct: 176 LHA-----LGVSSSLADVR-ALFDEMPVKDSVSYNVMISSHANHGL---VSLARHYFDLA 226

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
                   + ++  Y R      A+++FD   E D + + A++ G+ Q S++ ++  +F 
Sbjct: 227 PEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFN 286

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            M   DV S    VSG  R       M + R +   A +    R+V   T ++ GY + G
Sbjct: 287 KMPQRDVVSWNTMVSGYARR----GDMAEARRLFDVAPI----RDVFTWTAIVSGYAQNG 338

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
           ++ +A+RVFD  +   N+++WNAMMA Y Q+       ELF  +  R  A    S+  +L
Sbjct: 339 MLEEAKRVFDA-MPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVA----SWNTML 393

Query: 311 TALCNAGLAGES 322
           T    AG+  E+
Sbjct: 394 TGYAQAGMLDEA 405



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 35/254 (13%)

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS--TMYCVSG 206
           R PD A+++F  +  R    Y  M+ G+A N RL  +LS F  +   D  S  T+    G
Sbjct: 122 RVPD-AERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALG 180

Query: 207 ALRAAAELAA---------------MEQCRVIHG------HAVVSGLDRNVIVGTGLIDG 245
              + A++ A               M      HG      H      +++ +   G++  
Sbjct: 181 VSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAA 240

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y + G + +AR +FD   +  ++I+WNA+MAGY Q+       ++F+ +  R    D  S
Sbjct: 241 YVRNGRIQEARELFDSR-TEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQR----DVVS 295

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           +  +++     G   E+ +  +   +R      +  +T ++S   + G LE+A+R+  AM
Sbjct: 296 WNTMVSGYARRGDMAEARRLFDVAPIR-----DVFTWTAIVSGYAQNGMLEEAKRVFDAM 350

Query: 366 PFEPDAAVWRALLS 379
           P + +A  W A+++
Sbjct: 351 P-DKNAVSWNAMMA 363



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 101/250 (40%), Gaps = 40/250 (16%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           LRAAA   +  +        +    D  VI     I  + +AG V DA R+F   +   +
Sbjct: 79  LRAAARQRSHRRPPAPADACITGKPDMEVIRRNRAITAHMRAGRVPDAERLF-AAMPRRS 137

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
           +  +N M+AGYA  G     L  F  +      PD +S+  +L AL  +    +     +
Sbjct: 138 TSTYNTMLAGYAANGRLPQALSFFRSIPR----PDSFSYNTLLHALGVSSSLADVRALFD 193

Query: 328 RMKVR------------------------YKLEPGLE--HYTCLISAMGRAGRLEDAERI 361
            M V+                        + L P  +   +  +++A  R GR+++A  +
Sbjct: 194 EMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEAREL 253

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL-SGVGR 420
             +   E DA  W AL++      + + A KM  ++    P  D   V+  N + SG  R
Sbjct: 254 FDSRT-EWDAISWNALMAGYVQRSQIEEAQKMFNKM----PQRD---VVSWNTMVSGYAR 305

Query: 421 WDEVAEVRKV 430
             ++AE R++
Sbjct: 306 RGDMAEARRL 315


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 180/556 (32%), Positives = 295/556 (53%), Gaps = 5/556 (0%)

Query: 21  VHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H+ A++S     +  N  I+N Y K   L  +  +F  +   N V+WT ++  ++ +  
Sbjct: 133 IHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAER 192

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            ++      +        ++   + + K CA L     FG  +H   +KL L  +   G+
Sbjct: 193 QMDALALFAKMVNEGVELDEYVFSIVLKACAGLEE-LNFGRQIHGHIVKLGLESEVSVGT 251

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            LV FY +  + ++A K F+ I E + V + A+I G+ Q     ++L  F  +R+  V  
Sbjct: 252 PLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDI 311

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             +  +   +A + LA        H  A+ S L       + +I  Y + G +  A RVF
Sbjct: 312 NSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVF 371

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E++   +++AW A++AGYA QG+    L+LF  ++  G  P+  +F+AVLTA  ++GL 
Sbjct: 372 -ESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLV 430

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E  +++E M   Y +   ++HY C++    RAG L++A  +  +MPF PDA  W+ LL 
Sbjct: 431 IEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLG 490

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
               +   ++     + L  ++P D + Y+++ N+ +  G+W E A VRK+M +R +RKE
Sbjct: 491 GCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKE 550

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
              SWI VKGKVH F+ GD+ H +TE+IY+KL  L +   +     + +E + N    E+
Sbjct: 551 LSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSVIKEETGLLTEEDVSN-SLPER 609

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
           +E L  HSE+LALAFGL+S  P    + + KNLR C+DCH+  K +S +  REIVVRD  
Sbjct: 610 KEQLLVHSERLALAFGLIS-TPSSAPVVVFKNLRACKDCHDFGKQVSLITGREIVVRDSF 668

Query: 560 RYHRFLNGSCTCGDLW 575
           R+H F  G C+C D W
Sbjct: 669 RFHHFKLGECSCNDYW 684



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 187/384 (48%), Gaps = 5/384 (1%)

Query: 17  DPRIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D R+ H +  ++       + N+++  Y K   L+ + ++F+ +   N+VSW  +ISA++
Sbjct: 28  DGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYA 87

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            + +    F        L   PN  T     ++  + S     G  +HS +++  L    
Sbjct: 88  ENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPS-GLEIGKQIHSHAIRSGLGSNA 146

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +A+ + Y +    + A+ VF+++ E++ V +  ++VG+ Q  R +D+L++FA M + 
Sbjct: 147 SVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNE 206

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V    Y  S  L+A A L  +   R IHGH V  GL+  V VGT L+D Y K   +  A
Sbjct: 207 GVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESA 266

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            + F E +S  N ++W+A++ GY Q G+    L+ F  L  R    + +++ ++  A C+
Sbjct: 267 TKAF-EWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQA-CS 324

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           A     S        ++  L       + +I+   R GRL+ A R+  ++  +PDA  W 
Sbjct: 325 ALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESID-DPDAVAWT 383

Query: 376 ALLSFSAIHGKADMASKMGKRLID 399
           A+++  A  G A  A K+ +R+ D
Sbjct: 384 AIIAGYAYQGNAPEALKLFRRMQD 407


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 191/570 (33%), Positives = 315/570 (55%), Gaps = 27/570 (4%)

Query: 19  RIVHARALKS--SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R VH   +K+  S+ DR   N L+  YSK   L  +  +F  +   ++VS+T++I+ ++ 
Sbjct: 316 RAVHCFGVKACFSREDR-FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAR 374

Query: 77  SPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
             L+   + +F  M         P+  T+ ++   CA  +     G  +H    +  +  
Sbjct: 375 EGLAGEAVKLFEEMEEE---GISPDVYTVTAVLNCCAR-NRLLDEGKRVHEWIKENDMGF 430

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF---- 189
             F  +AL+  Y++  S   A+ VF E+R +D++ +  +I G+++N    ++LS+F    
Sbjct: 431 DIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLL 490

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            + R S    T+ CV   L A A L+A ++ R IHG+ + +G   +  V   L+D Y K 
Sbjct: 491 VEKRFSPDERTVACV---LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  AR +FD+ ++  + ++W  M+AGY   G     + LF+ +   G  PDE SF+++
Sbjct: 548 GALLLARLLFDD-ITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSL 606

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  ++GL  E  ++   M+   K+EP +EHY C++  + R G L  A R    MP  P
Sbjct: 607 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPP 666

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           DA +W ALL    IH    +A ++ +++ ++ P +   YV++AN+ +   +W+EV  +RK
Sbjct: 667 DATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRK 726

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKL----AELMEECERLGYVP 485
            +  R +RK  G SWIE+KG+V++F+AGD  +  TE I   L    A ++EE    GY P
Sbjct: 727 RIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEE----GYSP 782

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
           +    L +  + EK EAL  HSEKLA+A G++S +  GK +R+ KNLR+C DCHE  K++
Sbjct: 783 LTKYALIDAEEMEKEEALCGHSEKLAMALGIIS-SGHGKIIRVTKNLRVCGDCHEMAKFM 841

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S++  REIV+RD NR+H+F +G C+C   W
Sbjct: 842 SKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 16/353 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSML 88
           D ++ + L   Y+    L  + R+F+ +     + W  L++  + S     S+ +F  M+
Sbjct: 128 DSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM 187

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
              +     +  T + + K+ +SL  +   G  LH   LK    ++   G++LV FY + 
Sbjct: 188 ---SSGVEMDSYTFSCVSKSFSSL-RSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKN 243

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              D+A+KVFDE+ ERDV+ + ++I G+  N      LSVF  M  S +   +  +    
Sbjct: 244 HRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVF 303

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
              A+   +   R +H   V +   R       L+D Y K G +  A+ VF E +S  + 
Sbjct: 304 AGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFRE-MSGRSV 362

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK---W 325
           +++ +M+AGYA++G     ++LF  +E  G +PD Y+  AVL       L  E ++   W
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEW 422

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           I+   + + +         L+    + G + +AE +   M  + D   W  ++
Sbjct: 423 IKENDMGFDIFVS----NALMDMYAKCGSMREAELVFSEMRVK-DIISWNTVI 470


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 176/557 (31%), Positives = 296/557 (53%), Gaps = 6/557 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA A+K    +D  + N L+  Y K   + YS  +F+ +   + +SWT +I+ ++ S  
Sbjct: 388 VHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSR 447

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
            +                +   + S+ + C+ L    L    LH  +++  L D     +
Sbjct: 448 HIEALEIFREAQKEGIKVDPMMIGSILEACSGL-ETILLAKQLHCYAIRNGLLDL-VVKN 505

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            ++  Y       ++ K+F+ + ++D+V + +MI  +A +  L ++L +FA+M+S+DV  
Sbjct: 506 RIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQP 565

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               +   L A   L+++ + + +HG  +         + + L+D Y   G +S A +VF
Sbjct: 566 DSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVF 625

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +  +   + + W AM+      G     ++LF  +   G  PD  SFLA+L A  ++ L 
Sbjct: 626 NA-VKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLV 684

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E + +++ M   Y+LEP  EHY C++  +GR+G+ E+A     +MP +P + VW +LL 
Sbjct: 685 NEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLG 744

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +H   ++A     RL+++ P +   YV+V+NV + +G+W+   EVR  + +R +RK+
Sbjct: 745 ACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKD 804

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL-GYVPVWDEMLHNVGDRE 498
              SWIE+   VH F   D  H   E I  KLAE+ E   +  GY      +LH+V + E
Sbjct: 805 PACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEE 864

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K + L  HSE+LA++FGL++  P G  LRI KNLR+C DCHE  K +S++ +R+IVVRD 
Sbjct: 865 KVDVLHRHSERLAISFGLINTRP-GMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDA 923

Query: 559 NRYHRFLNGSCTCGDLW 575
           NR+H F  GSC+CGD W
Sbjct: 924 NRFHHFSGGSCSCGDFW 940



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 182/391 (46%), Gaps = 13/391 (3%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           R +HA  LKS        N L+  Y+K   +  +LR+F  I   + +SW +++S +  + 
Sbjct: 286 RELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNG 345

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           L   ++     MLR     F P+   + SL      L    L G  +H+ ++K  L    
Sbjct: 346 LYAEAIEFISEMLRG---GFQPDHACIVSLSSAVGHLGW-LLNGKEVHAYAIKQRLDSDT 401

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             G+ L+  Y + R  + +  VFD +R +D + +  +I  +AQ+SR +++L +F + +  
Sbjct: 402 QVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKE 461

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +      +   L A + L  +   + +H +A+ +GL  +++V   +ID YG+ G V  +
Sbjct: 462 GIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHS 520

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            ++F E +   + + W +M+  YA  G  +  L LF  ++     PD  + +++L A+  
Sbjct: 521 LKMF-ETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAI-- 577

Query: 316 AGLAGESE-KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            GL+  ++ K +    +R          + L+      G L  A ++  A+  + D  +W
Sbjct: 578 GGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCK-DMVLW 636

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDD 405
            A+++ + +HG    A  + KR++      D
Sbjct: 637 TAMINATGMHGHGKQAIDLFKRMLQTGVTPD 667



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 146/301 (48%), Gaps = 8/301 (2%)

Query: 22  HARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           HA A  S + D   +   L+  Y K   ++ +  LF+ + S  + SW ALI A+ +S  +
Sbjct: 83  HAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSA 142

Query: 81  ---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
              L ++ +M         P+  TLAS+ K  + +      G  +H L++K  L    F 
Sbjct: 143 CEALGVYRAMRLSAASGVAPDGCTLASVLKA-SGVEGDGRCGCEVHGLAVKHGLDRSTFV 201

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            +AL+  Y++    D+A +VF+ + + RDV  + +MI G  QN   + +L +F  M+ + 
Sbjct: 202 ANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAV 261

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +    Y   G L+   ELA +   R +H   + SG + N I    L+  Y K G V  A 
Sbjct: 262 LSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN-IQCNALLVMYTKCGRVDSAL 320

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RVF E +   + I+WN+M++ Y Q G  +  +E    +   GF PD    +++ +A+ + 
Sbjct: 321 RVFRE-IDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHL 379

Query: 317 G 317
           G
Sbjct: 380 G 380



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 182/419 (43%), Gaps = 24/419 (5%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHI-PSPNIVSWTALISAHSNS 77
           VH  A+K    DRS +  N LI  Y+K  +L  ++R+F  +    ++ SW ++IS    +
Sbjct: 186 VHGLAVKHG-LDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQN 244

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +   +L++F  M R   LS   N  T   + + C  L+   L G  LH+  LK      
Sbjct: 245 GMFLQALDLFRGMQR-AVLSM--NSYTTVGVLQVCTELAQLNL-GRELHAALLKSGSEVN 300

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
             C + LV  Y++    D+A +VF EI E+D + + +M+  + QN    +++   ++M  
Sbjct: 301 IQCNALLV-MYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLR 359

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                   C+     A   L  +   + +H +A+   LD +  VG  L+D Y K   +  
Sbjct: 360 GGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEY 419

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           +  VFD  + + + I+W  ++  YAQ       LE+F   +  G   D     ++L A  
Sbjct: 420 SAHVFDR-MRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEA-- 476

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTC---LISAMGRAGRLEDAERIAMAMPFEPDA 371
               +G     + +    Y +  GL        +I   G  G +  + ++   +  + D 
Sbjct: 477 ---CSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVE-QKDI 532

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             W ++++  A  G  + A  +   +   +   DS  V + ++L  +G    +A+ ++V
Sbjct: 533 VTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDS--VALVSILGAIGGLSSLAKGKEV 589



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 16/261 (6%)

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           D  F  + L+  Y +     +A+ +FD +  R V  + A+I  +  +    ++L V+  M
Sbjct: 93  DDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAM 152

Query: 193 RSSDVGSTMY--CVSGALRAAAELAAMEQCRV-IHGHAVVSGLDRNVIVGTGLIDGYGKA 249
           R S         C   ++  A+ +    +C   +HG AV  GLDR+  V   LI  Y K 
Sbjct: 153 RLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKC 212

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           GI+  A RVF+      +  +WN+M++G  Q G     L+LF  ++    + + Y+ + V
Sbjct: 213 GILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGV 272

Query: 310 L---TALCNAGLAGESEKWIER--MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           L   T L    L  E    + +   +V  +    L  YT       + GR++ A R+   
Sbjct: 273 LQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYT-------KCGRVDSALRVFRE 325

Query: 365 MPFEPDAAVWRALLSFSAIHG 385
           +  E D   W ++LS    +G
Sbjct: 326 ID-EKDYISWNSMLSCYVQNG 345


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 177/561 (31%), Positives = 307/561 (54%), Gaps = 26/561 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           D SI N L + YSK   L  S++ F      +++SWT +ISA   +  + + L +F+ ML
Sbjct: 115 DSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEML 174

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                +  PN  TL S+   C+++  + L G+ +HSLS KL         ++LV+ Y + 
Sbjct: 175 FE---NVEPNDFTLTSVLSLCSTIQSSDL-GMQVHSLSTKLGHESNLRITNSLVYLYLKC 230

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL-----------VDSLSVFADMRSSDV 197
              D AK +F+ +  ++++ + AMI G AQ   L            ++L ++  +  S  
Sbjct: 231 GCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGR 290

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
              ++ +S  L   + LAA+EQ   IH   + SG   +V+VGT L+D Y K G +  AR+
Sbjct: 291 KPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARK 350

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            F  ++S    I+W +M+  +A+ G     L+LF  + + GF P++ +F+ VL A  +AG
Sbjct: 351 AF-LDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAG 409

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  E+ ++ E M+  YK++P ++HY CL+    R GRL++A  +   M  EP+  +W  L
Sbjct: 410 MVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLL 469

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           ++    HG  ++     ++L+ + P     YV++ N+     RW++V+ VR++MK+ +V 
Sbjct: 470 IAGCRNHGNEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVG 529

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY-----VPVWDEMLH 492
           K    S I +KG+VH F   +R+H    +++T L +L++  + LGY     + V D+   
Sbjct: 530 KLKDWSRISIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGYEQLENMEVIDDEEE 589

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
              ++    A+ YHSEKLA+ FGL++  P G  +R++K++ +C+DCH+  K +S    R 
Sbjct: 590 EAEEKAFSSAV-YHSEKLAVTFGLLN-TPIGAPIRVIKSVTMCKDCHDFMKVVSSQTTRH 647

Query: 553 IVVRDVNRYHRFLNGSCTCGD 573
           I+++D  R H+F+NG C+C D
Sbjct: 648 IIIKDGKRLHKFVNGQCSCAD 668



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 199/430 (46%), Gaps = 25/430 (5%)

Query: 20  IVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---S 75
           +VHA  +K+   +     + + N Y+K  ++  + ++F+++P  N+V WT L++ +   S
Sbjct: 1   MVHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              +++ +F  ML   +    P+  TL+     C+SL  +   G   H+  +K  +    
Sbjct: 61  QPEVAVEVFGDMLESGSF---PSNFTLSIALNACSSLE-SITLGKQFHAFIIKYRISHDS 116

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             G+AL   YS+F S D++ K F E  E+DV+ +  +I     N R    L +F +M   
Sbjct: 117 SIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFE 176

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           +V    + ++  L   + + + +    +H  +   G + N+ +   L+  Y K G + +A
Sbjct: 177 NVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEA 236

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGD--------QST---VLELFHLLEMRGFAPDEY 304
           + +F+  +   N I WNAM+AG+AQ  D        Q T    L ++  L   G  PD +
Sbjct: 237 KNLFNR-MEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLF 295

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +  ++LT +C+   A E  + I    ++      +   T L+    + G +E A +  + 
Sbjct: 296 TLSSILT-VCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLD 354

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYVIVANVLSGVGRWD 422
           M      + W ++++  A HG++  A ++ +  RL    P +   +V V    S  G  D
Sbjct: 355 MSTRTLIS-WTSMITSFARHGQSQHALQLFEDMRLAGFRP-NQITFVGVLAACSHAGMVD 412

Query: 423 EVAEVRKVMK 432
           E  E  ++M+
Sbjct: 413 EALEYFEIMQ 422


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 175/538 (32%), Positives = 284/538 (52%), Gaps = 42/538 (7%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           L+  Y+K   L  + R+  ++   ++VSW ++I             L   +    +   +
Sbjct: 356 LVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKID 415

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
             T  S+   C       + G S+H L +K    +     +ALV  Y++    + A  VF
Sbjct: 416 HYTFPSVLNCCIV---GRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVF 472

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
           +++ E+DV+ + +++ G+ QN    +SL  F DMR S V    + V+  L A AEL  +E
Sbjct: 473 EKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLE 532

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
             + +H   +  GL  ++ V   L+  Y K G + DA  +F  ++ V + I W A++ GY
Sbjct: 533 FGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIF-VSMHVRDVITWTALIVGY 591

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A+ G                                      +S K+ ++MK  Y +EPG
Sbjct: 592 ARNGK-----------------------------------GRDSLKYFQQMKKIYGIEPG 616

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
            EHY C+I   GR G+L++A+ I   M  +PDA VW+ALL+   +HG  ++  +    L 
Sbjct: 617 PEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELGERAATNLF 676

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
           ++ P +   YV+++N+     +WD+ A++R++MK + + KE G SWIE+  ++H F++ D
Sbjct: 677 ELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIEMNSRLHTFISED 736

Query: 459 RMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREA-LWYHSEKLALAFGLV 517
           R H R  +IY+K+ E++   + +GYVP  +  LH++ DRE +EA L YHSEKLA+AFGL+
Sbjct: 737 RGHPREAEIYSKIDEIIRRIKEVGYVPDMNFSLHDM-DREGKEAGLAYHSEKLAVAFGLL 795

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           + +P G  +RI KNLR+C DCH + KYIS V  R I++RD N +H F  G C+C D W
Sbjct: 796 A-SPPGAPIRIFKNLRVCGDCHSAMKYISGVFTRHIILRDSNCFHHFKEGECSCEDYW 852



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 188/419 (44%), Gaps = 13/419 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS 75
            ++H   +K+  +++  +   L+  Y+K   +S +  LF  +     N V WTA+++ ++
Sbjct: 232 EMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYA 291

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
            +              T     NQ T  S+   C+S+S A  FG  +H   ++       
Sbjct: 292 QNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVS-AHCFGEQVHGCIVRNGFGCNA 350

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           +  SALV  Y++     +AK+V + + + DVV + +MIVG  ++    +++ +F  M + 
Sbjct: 351 YVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHAR 410

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           ++    Y     L     +      + +H   + +G +   +V   L+D Y K   ++ A
Sbjct: 411 NMKIDHYTFPSVLNCC--IVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCA 468

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             VF E +   + I+W +++ GY Q G     L+ F  + + G +PD++   ++L+A   
Sbjct: 469 YAVF-EKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAE 527

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             L  E  K +    ++  L   L     L++   + G L+DA+ I ++M    D   W 
Sbjct: 528 LTLL-EFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVR-DVITWT 585

Query: 376 ALLSFSAIHGKADMASK---MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           AL+   A +GK   + K     K++  I P  +  Y  + ++   +G+ DE  E+   M
Sbjct: 586 ALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEH-YACMIDLFGRLGKLDEAKEILNQM 643



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 133/304 (43%), Gaps = 38/304 (12%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDS---------- 185
           F  + L++  S+    D+A+++FD++ +RD   +  M+ G+A   RLV++          
Sbjct: 116 FHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSR 175

Query: 186 ---------------------LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
                                  +F  MR      + Y +   LR  + L  +++  +IH
Sbjct: 176 SSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIH 235

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGD 283
           G+ V +G + NV V  GL+D Y K   +S+A  +F     +  N + W AM+ GYAQ GD
Sbjct: 236 GYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGD 295

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               +E F  +   G   ++++F ++LTA C++  A    + +    VR          +
Sbjct: 296 DHKAIEFFRYMHTEGVESNQFTFPSILTA-CSSVSAHCFGEQVHGCIVRNGFGCNAYVQS 354

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA----SKMGKRLID 399
            L+    + G L  A+R+   M  + D   W +++     HG  + A     KM  R + 
Sbjct: 355 ALVDMYAKCGDLGSAKRVLENME-DDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMK 413

Query: 400 INPY 403
           I+ Y
Sbjct: 414 IDHY 417


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 175/544 (32%), Positives = 307/544 (56%), Gaps = 4/544 (0%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D  + ++L+  Y++   +  ++++F  +P  + V+W+ +++   ++   L+      R  
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                 ++  +  + + C +  +  + G S+H   L+  +       ++LV  Y++    
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRM-GASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           D A +VF  +  R+ V + AMI GFAQN +  ++L +F +M++S +      +  AL A 
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           + +  ++  R +HG  +V   D N I+GT  ID Y K G ++ A+ +F+  +S  + I W
Sbjct: 321 SNIGFLKLGRSVHGF-IVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNM-ISDRDLILW 378

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NAM+A     G     L LF  +   G  PD  +F ++L+AL ++GL  E + W  RM  
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVN 438

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            +K+ P  +HY CL+  + R+G +E+A  +  +M  EP  A+W ALLS    + K ++  
Sbjct: 439 HFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGE 498

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
            +   ++++ P D     +V+N+ +   +WD+V +VRK+MKD   +K  G S IE++G  
Sbjct: 499 SIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTR 558

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           HVF+  D+ H + E+I +K+A+L  E  ++GY+P  + + H++ +  K + L YHSE+LA
Sbjct: 559 HVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLA 618

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL++  P G  L I+KNLR+C DCH++ KYIS++ +REIVVRD  R+H F +G C+C
Sbjct: 619 IAFGLLNTGP-GTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSC 677

Query: 572 GDLW 575
            D W
Sbjct: 678 RDYW 681



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 172/376 (45%), Gaps = 17/376 (4%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKS-NLLSYSLRLFNHIPSPNIVSWTALISAHS--NS 77
           +HA  + SS A  ++ ++L   Y+++ +L +    L     S +I +W A+I+AHS   S
Sbjct: 30  LHALLIVSSSASHTLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGS 89

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P S    L + R    +  P+  T       CA L      G S+   +      D  F 
Sbjct: 90  PASA---LRVFRALPPAARPDSTTFTLALSACARLGD-LRGGESVRDRAFDAGYKDDVFV 145

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            S+L+H Y+R+ +  +A KVF  +  RD V +  M+ GF    + +D++ ++  MR   V
Sbjct: 146 CSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV 205

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 + G ++A      +     +HGH +  G+  +V+  T L+D Y K G++  A R
Sbjct: 206 KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF   +   N ++W+AM++G+AQ G     L LF  ++  G  PD  + ++ L A  N G
Sbjct: 266 VFGLMVH-RNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIG 324

Query: 318 ---LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
              L      +I R   R+     L   T  I    + G L  A+ +   M  + D  +W
Sbjct: 325 FLKLGRSVHGFIVR---RFDFNCILG--TAAIDMYSKCGSLASAQML-FNMISDRDLILW 378

Query: 375 RALLSFSAIHGKADMA 390
            A+++    HG+   A
Sbjct: 379 NAMIACCGAHGRGQDA 394


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 197/598 (32%), Positives = 320/598 (53%), Gaps = 51/598 (8%)

Query: 19  RIVHARALKSSQADRSIYNNLITNY---SKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           R +H + LK+      I  + +  +     S  L+Y+  +F+ I  PN   W  +I  +S
Sbjct: 35  RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYS 94

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           NS     +L ++  ML H   S   N  T   L K C+S+S A      +H+  +K+   
Sbjct: 95  NSKEPEEALLLYHHMLYH---SVPHNAYTFPFLLKACSSMS-ASEETQQIHAHIIKMGFG 150

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            + +  ++L++ YS+     +A+ +FD++ +RD V + +MI G+ +   +  +  +F  M
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210

Query: 193 RSSDVGSTMYCVSG-------------------------------ALRAAAELAAMEQCR 221
              ++ S    +SG                                L+A A+L  ++Q +
Sbjct: 211 PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 270

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF----DENLSVLNSIAWNAMMAG 277
            IH +     ++ + I+G  LID Y K G + +A  VF    ++ +SV     W AM++G
Sbjct: 271 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSV-----WTAMISG 325

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           YA  G     LE F  ++  G  P++ +F  +LTA  +AGL  E++   E M+  +  +P
Sbjct: 326 YAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 385

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            +EHY C++  +GRAG L++AE +   MP +P+AA+W ALL+   IHG  ++  ++GK L
Sbjct: 386 SIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKIL 445

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
           I ++P     Y+ +A++ +  G W++ A VR+ MK++ V K  G S I V G  H FLAG
Sbjct: 446 IQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAG 505

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
           D  H + ++I   L +++E     GY P   ++L ++ D+EK  A+ +HSEKLA+ FGL+
Sbjct: 506 DESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLI 565

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S  P G T+RIVKNLR+C DCH   K IS+V  REI++RD  R+H F +G+CTCGD W
Sbjct: 566 STKP-GMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLID--GYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           ME+ R IHG  + +GL  + I  + L+       +G ++ AR VFD      N+  WN M
Sbjct: 31  MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP-NTFMWNTM 89

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + GY+   +    L L+H +       + Y+F  +L A C++  A E  + I    +  K
Sbjct: 90  IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKA-CSSMSASEETQQIHAHII--K 146

Query: 335 LEPGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           +  G E YT   L++   ++G ++ A R+      + D   W +++      G+ +MA +
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSA-RLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYE 205

Query: 393 MGKRLIDIN 401
           +   + + N
Sbjct: 206 IFNHMPERN 214


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 304/559 (54%), Gaps = 22/559 (3%)

Query: 28  SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIF 84
           SSQ D      LIT Y+    +  + ++F+ I   ++VSW A+I+ +  +     +L +F
Sbjct: 144 SSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELF 203

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSAL--- 141
             M+R    +  P++ TL S+   CA  S +   G  +H+L     + D    GS+L   
Sbjct: 204 KEMMR---TNVRPDEGTLVSVLSACAQ-SGSIELGREIHTL-----VDDHHGFGSSLKIV 254

Query: 142 ---VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
              +  YS+    + A  +F+ +  +DVV +  +I G+   +   ++L +F +M  S   
Sbjct: 255 NAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 314

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                +   L A A L A++  R IH +    + G+     + T LID Y K G +  A 
Sbjct: 315 PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAH 374

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VF+  +    S +WNAM+ G+A  G  +   +LF  +   G  PD+ + + +L+A  ++
Sbjct: 375 QVFNSMMHKSLS-SWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHS 433

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL        + +   Y + P LEHY C+I  +G AG  ++AE I   MP EPD  +W +
Sbjct: 434 GLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCS 493

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    +HG  ++A    ++L++I P +  +YV+++N+ +  GRW++VA +R+V+  + +
Sbjct: 494 LLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGM 553

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S IE+   VH F+ GD++H ++ +IY  L E+    E  G+VP   E+L  + +
Sbjct: 554 KKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEE 613

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K  AL +HSEKLA+AFGL+S  P G  L +VKNLR+CR+CHE+ K IS++ +REIV R
Sbjct: 614 EWKEGALRHHSEKLAIAFGLISTKP-GTKLTVVKNLRVCRNCHEATKLISKIYKREIVAR 672

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F +G C+C D W
Sbjct: 673 DRTRFHHFRDGVCSCCDYW 691



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 187/435 (42%), Gaps = 63/435 (14%)

Query: 41  TNYSKSNLLS------------YSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSML 88
           TNY+ S LL             Y++ +F     PN++ W  ++   ++S   ++     +
Sbjct: 13  TNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYV 72

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R  +   +PN  T   L K+CA  S  F  G  +H+  +KL      +  ++L+  Y+R 
Sbjct: 73  RMVSXGHVPNAYTFPFLLKSCAK-SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARN 131

Query: 149 RSPDNAKKVFDEI-------------------------------RERDVVCYGAMIVGFA 177
              ++A+KVFD                                  ERDVV + AMI G+ 
Sbjct: 132 GRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYV 191

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS---GLDR 234
           +N    ++L +F +M  ++V      +   L A A+  ++E  R I  H +V    G   
Sbjct: 192 ENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREI--HTLVDDHHGFGS 249

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           ++ +    I  Y K G V  A  +F E LS  + ++WN ++ GY         L LF  +
Sbjct: 250 SLKIVNAFIGLYSKCGDVEIASGLF-EGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEM 308

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWI-----ERMKVRYKLEPGLEHYTCLISAM 349
              G +P++ + L+VL A  + G A +  +WI     +R+K    +  G    T LI   
Sbjct: 309 LRSGESPNDVTMLSVLPACAHLG-AIDIGRWIHVYIDKRLK---GVTNGSALRTSLIDMY 364

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSA 407
            + G +E A ++  +M      + W A++   A+HG+A+ A  +  R+    I P DD  
Sbjct: 365 AKCGDIEAAHQVFNSM-MHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEP-DDIT 422

Query: 408 YVIVANVLSGVGRWD 422
            V + +  S  G  D
Sbjct: 423 LVGLLSACSHSGLLD 437



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 33/228 (14%)

Query: 123 HSLSLKLSLHDKPFCGSALVHF---YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
           H+  +K  LH+  +  S L+        F     A  VF+  +E +++ +  M+ G A +
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
           S LV  L ++  M S       Y     L++ A+    E+ R IH   +  G + +    
Sbjct: 62  SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121

Query: 240 TGLIDGYGKAGIVSDARRVFD------------------------------ENLSVLNSI 269
           T LI  Y + G + DAR+VFD                              + ++  + +
Sbjct: 122 TSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVV 181

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +WNAM+ GY +       LELF  +      PDE + ++VL+A   +G
Sbjct: 182 SWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSG 229



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N + WN M+ G A   D  + LE++  +   G  P+ Y+F  +L + C      E  + I
Sbjct: 47  NLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKS-CAKSKTFEEGRQI 105

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
               ++   E     +T LIS   R GRLEDA ++      + D     AL++  A  G 
Sbjct: 106 HAQVMKLGCELDRYAHTSLISMYARNGRLEDARKV-FDXSSQRDVVSCTALITGYASRGD 164

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
              A K+   + + +    +A  ++   +   G ++E  E+ K M    VR + G
Sbjct: 165 VRSARKVFDXITERDVVSWNA--MITGYVENCG-YEEALELFKEMMRTNVRPDEG 216


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 183/562 (32%), Positives = 303/562 (53%), Gaps = 16/562 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H+  +++   A+ ++   +   Y +   L  +  +F+ + + N V+WT L+  ++ +  
Sbjct: 210 IHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAK- 268

Query: 80  SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
            L + L +     +  +  ++   + + K C  L   +  G  +HS  +KL    +   G
Sbjct: 269 KLEVALELFARMAMEGVELDEFVFSIVLKVCCGLED-WDMGRQIHSHIVKLGAESEVSVG 327

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           + LV FY +    ++A + F  I E + V + A+I GF+Q+ RL D + +F  +RS  V 
Sbjct: 328 TPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVV 387

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
              +  +   +A A  A +      HG A+  GL   +   + ++  Y K G +  ARR 
Sbjct: 388 LNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRA 447

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F E++   +++AW A+++GYA  G+ +  L  F  ++  G  P+  +F+AVLTA  ++GL
Sbjct: 448 F-ESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGL 506

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E+++++  M   Y ++P ++HY C+I    RAG L++A  +   MPFEPDA  W++LL
Sbjct: 507 VAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLL 566

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
                H    +     + L  ++P D + Y+++ N+ S  G+W+E   VRK+M +R ++K
Sbjct: 567 GGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKK 626

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD-- 496
           E   SWI VKG+VH F+ GDR H +TE IY+KL E   +C  +   PV   +L+   D  
Sbjct: 627 EVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEF--KCSVID-SPV--RLLNEEDDVS 681

Query: 497 ---REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
                ++E L  HSEKLA+AFGL+S       L + KNLR CRDCHE  K +S V  R+I
Sbjct: 682 CSLSARKEQLLDHSEKLAIAFGLISTEDNAPIL-VFKNLRACRDCHEFGKQVSMVTGRQI 740

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           VVRD  R+H F +G C+C D W
Sbjct: 741 VVRDSTRFHHFKSGKCSCNDYW 762



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 193/425 (45%), Gaps = 25/425 (5%)

Query: 17  DPRIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D R++H R  ++      SI N L+  Y          ++F+ +   N+VSW  +ISA++
Sbjct: 105 DGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYA 164

Query: 76  -NSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSL 131
            N  L  ++ +F  M         PN     SL ++C  L  +FL  G  +HS  ++  L
Sbjct: 165 KNGELEKAIRLFSDM---QASGIRPNSAVYMSLLQSC--LGPSFLELGKQIHSHVIRAQL 219

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           +      +A+ + Y R    + AK VFD +  ++ V +  ++VG+ Q  +L  +L +FA 
Sbjct: 220 NANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFAR 279

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M    V    +  S  L+    L   +  R IH H V  G +  V VGT L+D Y K G 
Sbjct: 280 MAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGD 339

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  A R F   +S  N ++W+A+++G++Q G     +++F  L   G   + + + +V  
Sbjct: 340 IESAYRSFGR-ISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQ 398

Query: 312 ALC-----NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
           A       N G     +  I+R  V Y     L   + +++   + GRL+ A R A    
Sbjct: 399 ACAAQANLNMGSQAHGDA-IKRGLVSY-----LYGESAMVTMYSKCGRLDYARR-AFESI 451

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
            EPDA  W A++S  A HG A  A    +R+       ++   I   VL+       VAE
Sbjct: 452 DEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIA--VLTACSHSGLVAE 509

Query: 427 VRKVM 431
            ++ +
Sbjct: 510 AKQYL 514



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 113/256 (44%), Gaps = 14/256 (5%)

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           +V  ++  +L ++     +M  +DV  T +       A  +L ++   R+IH       L
Sbjct: 59  LVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDR-----L 113

Query: 233 DRNVIVGTGLIDG-----YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
            R V   +G I+      Y   G   D ++VFDE L + N ++W  +++ YA+ G+    
Sbjct: 114 RRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEML-MKNLVSWVIVISAYAKNGELEKA 172

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           + LF  ++  G  P+   ++++L +        E  K I    +R +L   +   T + +
Sbjct: 173 IRLFSDMQASGIRPNSAVYMSLLQSCLGPSFL-ELGKQIHSHVIRAQLNANITVETAICN 231

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL-IDINPYDDS 406
              R G LE A+ +   M  + +A  W  L+       K ++A ++  R+ ++    D+ 
Sbjct: 232 MYVRCGWLEGAKLVFDGMDAQ-NAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEF 290

Query: 407 AYVIVANVLSGVGRWD 422
            + IV  V  G+  WD
Sbjct: 291 VFSIVLKVCCGLEDWD 306


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 188/570 (32%), Positives = 314/570 (55%), Gaps = 24/570 (4%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLS------YSLRLFNHIPSPNIVSWTALIS 72
           R +HAR L       S+ + LI+       LS      Y+ ++F+ IP+P I ++ ++I 
Sbjct: 5   RQIHARILTHVPPISSV-SFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIR 63

Query: 73  A------HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLS 126
                   S  P+ L   +    +P     PN  T+A + K C S+  A   G  +H+  
Sbjct: 64  GCLYTKIPSKEPIHLFKDMVGKGYPN----PNTFTMAFVLKAC-SIIMALEEGKQIHAQI 118

Query: 127 LKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186
           L+      P+  S+LV+FYS+      A+KVFDEI ER++VC+ AM+ G+A+   + ++L
Sbjct: 119 LRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEAL 178

Query: 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246
            +F +M+   +      + G L A A + A++  + +H +     +  ++ + T LI+ Y
Sbjct: 179 IMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMY 238

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306
            K G +  AR +FDE + V +S AW++M+ G A  G     L +F  +E     P+  +F
Sbjct: 239 AKCGCIEKAREIFDE-MRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTF 297

Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
           + +L+A  + GL  + +++   M +   +EP +EHY C++  + R G +++A   A+ +P
Sbjct: 298 IGILSACAHGGLVSDGKRYWSSM-LELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIP 356

Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
             PD  +WR LL     +     A  +  +L+++ P+    Y+I+AN+ + V + ++V+ 
Sbjct: 357 -TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSH 415

Query: 427 VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
           VRK+MK+  ++   G + IEV G VH F+ GD  H   E+I   L ++  +    GY P 
Sbjct: 416 VRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPF 475

Query: 487 WDEMLHNVGDREKREALWYHSEKLALAFGLV-SGAPRGKTLRIVKNLRICRDCHESFKYI 545
              +LH V D EK   L+ HSE+LA+A+GL+ + AP   T+RIVKNLR+C DCHE  K I
Sbjct: 476 VSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAP--ATIRIVKNLRVCGDCHEVTKII 533

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S++ +REI+VRD  R+H+F+NG+C+C D W
Sbjct: 534 SKIYDREIIVRDRVRFHKFVNGTCSCKDYW 563


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/570 (30%), Positives = 308/570 (54%), Gaps = 38/570 (6%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHPTLSF 95
            I  +S   L+  + ++F+   +  +V+W  ++S ++       S  +F+ M +      
Sbjct: 148 FIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKR---GV 204

Query: 96  LPNQRTLASLFKTCASLS------HAFLF---GLSLHSLSLKLSLHDK-PFCG------- 138
            PN  TL  +   C+ L       H + +   G+   +L L+  L D    CG       
Sbjct: 205 SPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQS 264

Query: 139 -------------SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDS 185
                        +++V  ++     D A+K FD+I ERD V + AMI G+ + +R +++
Sbjct: 265 VFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEA 324

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           L++F +M+ S+V    + +   L A A L A+E    +  +   + +  +  VG  LID 
Sbjct: 325 LALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDM 384

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K G V  A++VF E +   +   W AM+ G A  G     L +F  +      PDE +
Sbjct: 385 YFKCGNVGKAKKVFKE-MHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEIT 443

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           ++ VL A  +AG+  + + +   M +++ ++P + HY C++  +GRAGRLE+A  + + M
Sbjct: 444 YIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNM 503

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           P +P++ VW +LL    +H    +A    K+++++ P + + YV++ N+ +   RW+ + 
Sbjct: 504 PVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLR 563

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
           +VRK+M +R ++K  G S +E+ G V+ F+AGD+ H ++++IY KL  +M++  + GY P
Sbjct: 564 QVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSP 623

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
              E+  ++G+ +K  AL+ HSEKLA+A+ L+S  P G T+RIVKNLR+C DCH   K +
Sbjct: 624 DTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGP-GITIRIVKNLRMCVDCHHMAKLV 682

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S    RE++VRD  R+H F +GSC+C + W
Sbjct: 683 SEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 99/429 (23%), Positives = 190/429 (44%), Gaps = 45/429 (10%)

Query: 21  VHARALKSSQADRSIYNNLITNYS---KSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           +H+  +K   +   ++   +  +    +S  + Y+ ++F+ IP P +  W  +I  +S  
Sbjct: 26  IHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRI 85

Query: 76  NSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           N P + ++++L ML     +  P++ T   L K   + + A  +G  L + ++K      
Sbjct: 86  NHPQNGVSMYLLMLAS---NIKPDRFTFPFLLKG-FTRNMALQYGKVLLNHAVKHGFDSN 141

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F   A +H +S  R  D A+KVFD     +VV +  M+ G+ +  +   S  +F +M  
Sbjct: 142 LFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEK 201

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V      +   L A ++L  +E  + I+ +     ++RN+I+   LID +   G + +
Sbjct: 202 RGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDE 261

Query: 255 ARRVFD--ENLSVL----------------------------NSIAWNAMMAGYAQQGDQ 284
           A+ VFD  +N  V+                            + ++W AM+ GY +    
Sbjct: 262 AQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRF 321

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              L LF  ++M    PDE++ +++LTA  + G A E  +W++    +  ++        
Sbjct: 322 IEALALFREMQMSNVKPDEFTMVSILTACAHLG-ALELGEWVKTYIDKNSIKNDTFVGNA 380

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INP 402
           LI    + G +  A+++   M    D   W A++   AI+G  + A  M   +I+  I P
Sbjct: 381 LIDMYFKCGNVGKAKKVFKEM-HHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITP 439

Query: 403 YDDSAYVIV 411
            D+  Y+ V
Sbjct: 440 -DEITYIGV 447



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 149/318 (46%), Gaps = 21/318 (6%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           A+++  +  +R +  + +++T ++    +  + + F+ IP  + VSWTA+I  +    L 
Sbjct: 262 AQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGY----LR 317

Query: 81  LNIF---LSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +N F   L++ R   +S + P++ T+ S+   CA L  A   G  + +   K S+ +  F
Sbjct: 318 MNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLG-ALELGEWVKTYIDKNSIKNDTF 376

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G+AL+  Y +  +   AKKVF E+  +D   + AMIVG A N    ++L++F++M  + 
Sbjct: 377 VGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEAS 436

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIH-GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           +        G L A      +E+ +       +  G+  NV     ++D  G+AG + +A
Sbjct: 437 ITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEA 496

Query: 256 RRVFDENLSVLNSIAWNAMM-AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
             V        NSI W +++ A    +  Q   +    +LE+    P+     AV   LC
Sbjct: 497 HEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELE---PENG---AVYVLLC 550

Query: 315 NAGLAGESEKWIERMKVR 332
           N  +    ++W    +VR
Sbjct: 551 N--IYAACKRWENLRQVR 566


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 187/568 (32%), Positives = 304/568 (53%), Gaps = 45/568 (7%)

Query: 14  TSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           T  D R +H  A K   Q +  +  +LI  YS+      +  LF+ +P  ++ SW A+IS
Sbjct: 130 TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMIS 189

Query: 73  A---HSNSPLSLNIFLSM-LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
               + N+  +L++   M L    ++F+    T+ S+                       
Sbjct: 190 GLIQNGNAAQALDVLDEMRLEGIKMNFV----TVVSILPV-------------------- 225

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
                        V  Y++    D+A KVF+ I  +DV+ +  +I G+AQN    +++ V
Sbjct: 226 ------------FVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEV 273

Query: 189 FADMRS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           +  M    ++          L A A + A++Q   IHG  + + L  +V V T LID YG
Sbjct: 274 YKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYG 333

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G + DA  +F + +   +S+ WNA+++ +   G     L+LF  +   G  PD  +F+
Sbjct: 334 KCGRLVDAMSLFYQ-VPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFV 392

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           ++L+A  ++G   E  KW  R+   Y ++P L+HY C++  +GRAG LE A      MP 
Sbjct: 393 SLLSACSHSGFV-EEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPL 451

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           +PDA++W ALL    IHG  ++      RL +++  +   YV+++N+ + VG+W+ V +V
Sbjct: 452 QPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKV 511

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           R + ++R ++K  G S IEV  KV VF  G++ H + ++IY +L  L  + + LGY+P +
Sbjct: 512 RSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDY 571

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
             +L +V + EK   L  HSE+LA+AFG++S  P+   +RI KNLR+C DCH + K+ISR
Sbjct: 572 SFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK-SPIRIFKNLRVCGDCHNATKFISR 630

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           + +REIVVRD NR+H F +G C+CGD W
Sbjct: 631 ITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 155/385 (40%), Gaps = 32/385 (8%)

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
           F   LH+L +        F  + LV+ Y+       ++  FD+I ++DV  + +MI  + 
Sbjct: 34  FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 178 QNSRLVDSLSVFAD-MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
            N    +++  F   +  S++    Y     L+A   L      R IH  A   G   NV
Sbjct: 94  HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNV 150

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            V   LI  Y + G    AR +FD+ +   +  +WNAM++G  Q G+ +  L++   + +
Sbjct: 151 FVAASLIHMYSRFGFTGIARSLFDD-MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 209

Query: 297 RGFAPDEYSFLAVLTALCNA----GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
            G   +  + +++L    +     GL   + K  E + V+  +      +  LI+   + 
Sbjct: 210 EGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVIS-----WNTLITGYAQN 264

Query: 353 GRLEDAERIAMAM----PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
           G   +A  +   M       P+   W ++L   A  G      K+  R+I  N + D   
Sbjct: 265 GLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLD--- 321

Query: 409 VIVANVLSGV-GRWDEVAEVRKVMKDRRVRKEGGRSW--------IEVKGKVHVFLAGDR 459
           V VA  L  V G+   + +   +    +V +E   +W        I    +  + L G+ 
Sbjct: 322 VFVATCLIDVYGKCGRLVDAMSLF--YQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 379

Query: 460 MHERTEDIYTKLAELMEECERLGYV 484
           + E  +  +     L+  C   G+V
Sbjct: 380 LDEGVKPDHVTFVSLLSACSHSGFV 404


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 196/618 (31%), Positives = 309/618 (50%), Gaps = 78/618 (12%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSM 87
           +D  + N+L+  Y K   L  +  +F   P+ N+ SWT LI+    H  S  +L +F  M
Sbjct: 67  SDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEM 126

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           L+       P+  +  +    C++       G +LH+L  +    D     ++LV  YS+
Sbjct: 127 LKQ---GIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSK 183

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM------RSSD--VGS 199
             S + + + F+ + E + V + AMI  FA++ R +++L     M        SD  VG+
Sbjct: 184 CGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSDVVVGT 243

Query: 200 T---MYC-VSGALRAAAELAAMEQCRVIHGHAVVS---------------------GLDR 234
           T   MY   SG   A A    +++  +I  + ++S                     GL+ 
Sbjct: 244 TLVNMYAKCSGLHDANAAFVKLQEPNIITWNVLISAYVQHCCFKEAMELFRRMLLLGLEM 303

Query: 235 NVI----------VGTGLIDG--------------------------YGKAGIVSDARRV 258
           + +          V   L DG                          YGK G + DA  +
Sbjct: 304 DEVTFINILGACCVPVALEDGRAIHACVREHPLASNHAPLENVILNMYGKCGSLQDAEAM 363

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC-NAG 317
           F +++S  + IAWN M+A Y Q G  S  L  + L++  G  PD+Y++++V+ A C NAG
Sbjct: 364 F-KSMSQPDVIAWNTMIAAYGQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDASCANAG 422

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E+  +   M+  + + PG  HY C++ ++G+AGRL DAE +   MPFEPD   W + 
Sbjct: 423 LPEEAHAYFVSMQQDHGVRPGGGHYGCMVESLGKAGRLSDAETLIQCMPFEPDVLTWTSF 482

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L+    HG         K  I I+P   + YV +A + +  G + E + +RK+M DR +R
Sbjct: 483 LANCRSHGDMKRGKLAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIR 542

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K  GRS I++   V+ F AGD+ + R+++I+ +L  L +E +  GY P    + H+V   
Sbjct: 543 KNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKSAGYDPDMAHVAHDVEAG 602

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           +K   L+ HSE+LA+AFG++S +P G  LRI+KNLR+C DCH   K  S++  REI+VRD
Sbjct: 603 QKEPLLFAHSERLAIAFGIISTSP-GTPLRIMKNLRVCGDCHTMTKLTSKITRREIIVRD 661

Query: 558 VNRYHRFLNGSCTCGDLW 575
            NR+H F NGSC+C D W
Sbjct: 662 SNRFHHFKNGSCSCKDFW 679



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 10/181 (5%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           +++ A L A+ + R IH      GL  +V V   L+  YGK G + +AR VF E     N
Sbjct: 41  IQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVF-EATPAKN 99

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL----AGESE 323
             +W  ++   AQ G     L LF+ +  +G  P   SF A + A C+AG     AG + 
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINA-CSAGPEFLPAGRAL 158

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
             + R   RY  +  +   T L+S   + G LE++ R   +M  EP+A  W A+++  A 
Sbjct: 159 HALLR---RYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMT-EPNAVSWNAMIAAFAE 214

Query: 384 H 384
           H
Sbjct: 215 H 215



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           + ++CA L  A   G  +H L  ++ L    +  + LV  Y +  S + A+ VF+    +
Sbjct: 40  VIQSCARLG-ALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAK 98

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA-AAELAAMEQCRVI 223
           +V  +  +I   AQ+ R  ++L++F +M    +       + A+ A +A    +   R +
Sbjct: 99  NVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRAL 158

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
           H      G    V+  T L+  Y K G + ++ R F E+++  N+++WNAM+A +A+ 
Sbjct: 159 HALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTF-ESMTEPNAVSWNAMIAAFAEH 215


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/564 (31%), Positives = 307/564 (54%), Gaps = 15/564 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +++H + +K    +D  I   L+  Y+    L  +  LF  +   N V WT++IS +  +
Sbjct: 99  KVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKN 158

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                  L   +     F P++ T+A+L   CA L    + G+ LHS   ++ +      
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGV-GMKLHSHIREMDMKICAVL 217

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF------AD 191
           GSALV+ Y++      A++VFD++ ++DV  + A+I G+ +N+R  ++L +F      ++
Sbjct: 218 GSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSN 277

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR ++V      +   + A A+L  +E  R +H +   +    +V +   LID + K G 
Sbjct: 278 MRPNEV-----TILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGD 332

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           +  A+R+FD ++S  + I+WN+M+ G+A  G     L  F L++     PDE +F+ VLT
Sbjct: 333 IDAAKRIFD-SMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLT 391

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  +AGL  E +K    ++  Y +    EHY C++  + RAG L +A      MP +PD 
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           A+W ++L    ++   ++  +  + L+ + P +D  Y++++N+ +    W+EV +VR++M
Sbjct: 452 AIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELM 511

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
            ++ ++K  G S + +    H FLAGD  H    +I   L ++ E+ +  GYV    E+L
Sbjct: 512 NEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVL 571

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            N+ D +K E++  HSEKLAL +GL+     G+ + I+KNLR+C DCH   K +S++ +R
Sbjct: 572 LNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIV-ILKNLRVCSDCHTLIKLVSKIYQR 630

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           +I +RD NR+H F +GSC+C D W
Sbjct: 631 QITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 181/383 (47%), Gaps = 17/383 (4%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASL 105
           + Y+  +F H    ++++W +++ A  NS +   +L  +  ML       +P++ T  SL
Sbjct: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS--RNVPDRFTFPSL 85

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K CA L   F  G  LH   +K  LH   +  + L++ Y+      +A+ +F+ +  R+
Sbjct: 86  LKGCALLLE-FKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRN 144

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
            V + +MI G+ +N    ++L ++  M           ++  + A AEL  +     +H 
Sbjct: 145 KVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHS 204

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           H     +    ++G+ L++ Y K G +  AR+VFD+ LS  +  AW+A++ GY +    +
Sbjct: 205 HIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDK-LSDKDVYAWSALIFGYVKNNRST 263

Query: 286 TVLELFHLLEMRG---FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
             L+LF   E+ G     P+E + LAV++A    G   E+ +W+     R +    +   
Sbjct: 264 EALQLFR--EVAGGSNMRPNEVTILAVISACAQLG-DLETGRWVHDYITRTQKGHSVSLN 320

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH--GKADMASKMGKRLIDI 400
             LI    + G ++ A+RI  +M ++ D   W ++++  A+H  G+  +A     +  D+
Sbjct: 321 NSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGFALHGLGREALAQFRLMQTTDL 379

Query: 401 NPYDDSAYVIVANVLSGVGRWDE 423
            P D+  ++ V    S  G   E
Sbjct: 380 QP-DEITFIGVLTACSHAGLVQE 401


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 268/459 (58%), Gaps = 3/459 (0%)

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G ++HS+ ++       +  ++L+H Y+      +A KVFD++ E+D+V + ++I GFA
Sbjct: 6   LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 65

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           +N +  ++L+++ +M S  +    + +   L A A++ A+   + +H + +  GL RN+ 
Sbjct: 66  ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLH 125

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE-M 296
               L+D Y + G V +A+ +FDE +   NS++W +++ G A  G     +ELF  +E  
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEMVD-KNSVSWTSLIVGLAVNGFGKEAIELFKYMEST 184

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            G  P E +F+ +L A  + G+  E  ++  RM+  YK+EP +EH+ C++  + RAG+++
Sbjct: 185 EGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVK 244

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
            A     +MP +P+  +WR LL    +HG +D+A     +++ + P     YV+++N+ +
Sbjct: 245 KAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYA 304

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
              RW +V ++RK M    V+K  G S +EV  +VH FL GD+ H +++ IY KL E+  
Sbjct: 305 SEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTG 364

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
                GYVP    +  +V + EK  A+ YHSEK+A+AF L+S  P    + +VKNLR+C 
Sbjct: 365 RLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLIS-TPERSPITVVKNLRVCA 423

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH + K +S+V  REIVVRD +R+H F NGSC+C D W
Sbjct: 424 DCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSNSPL-SLNIFLSMLRHP 91
           + N+L+  Y+    ++ + ++F+ +P  ++V+W ++I+  A +  P  +L ++  M    
Sbjct: 25  VQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM---N 81

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
           +    P+  T+ SL   CA +  A   G  +H   +K+ L       + L+  Y+R    
Sbjct: 82  SKGIKPDGFTIVSLLSACAKIG-ALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRV 140

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           + AK +FDE+ +++ V + ++IVG A N    +++ +F  M S++
Sbjct: 141 EEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTE 185


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/566 (30%), Positives = 302/566 (53%), Gaps = 26/566 (4%)

Query: 29   SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFL 85
            ++ D   +N ++++Y +   +  S+ LF  +P  +  SW  +I     +    ++L +  
Sbjct: 450  AEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLY 509

Query: 86   SMLRH-PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
             M+   P      N+ T +      +SLS     G  +H+  LK+ + D  F  ++L+  
Sbjct: 510  KMVAAGPAF----NKLTFSIALVLASSLS-VLGLGKQIHTQVLKVGVLDDGFVRNSLIDM 564

Query: 145  YSRFRSPDNAKKVFDEIRER---------------DVVCYGAMIVGFAQNSRLVDSLSVF 189
            Y +    + A  +F  + +                + V + +M+ G+ QN R  D+L  F
Sbjct: 565  YCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTF 624

Query: 190  ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            + M  S V    + ++  + A A    +E  R +HG+    G   +V +G+ +ID Y K 
Sbjct: 625  SFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKC 684

Query: 250  GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
            G ++DA  +F++     N + W +M++G A  G     + LF L+   G  P+E SF+ V
Sbjct: 685  GSLNDAWLIFNQAKD-RNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGV 743

Query: 310  LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
            LTA  +AGL  E  K+   M+  Y + PG EH+TC++   GRAGRL + +          
Sbjct: 744  LTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISK 803

Query: 370  DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
             ++VWR+ LS   +H   +M   + K+L+++ P+D   Y++ +++ +   RW+E A++R 
Sbjct: 804  LSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRS 863

Query: 430  VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
            +M+ R V+K   +SWI++K +VH F+ GDR H +   IY+ L EL+   + +GY      
Sbjct: 864  LMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTP 923

Query: 490  MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
            ++ +V   +++  L YHSEKLA+A+G++S AP G  +R++KNLR+C DCH   KY S ++
Sbjct: 924  VMQDVEQEQRQVLLGYHSEKLAIAYGIISTAP-GTPIRVMKNLRVCIDCHNFIKYASELL 982

Query: 550  EREIVVRDVNRYHRFLNGSCTCGDLW 575
             REI++RD++R+H F +G C+C D W
Sbjct: 983  GREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/469 (22%), Positives = 205/469 (43%), Gaps = 61/469 (13%)

Query: 17  DPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +  ++HA+ +K+        N+L+  Y+KS  L  + ++F  IP  ++ SWT LIS  + 
Sbjct: 306 NSEVLHAKLIKNGCVGIR-GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFAR 364

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             LS ++     +       PNQ TL+ + K+C+S  +    G  +H   L+  L     
Sbjct: 365 IGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAV 424

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++++ +Y + R    A+K+F  + E+D V +  M+  + Q   +  S+ +F  +   D
Sbjct: 425 LNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKD 484

Query: 197 VGSTMYCVSGALRAAAELAAMEQC-------------------------------RVIHG 225
             S    + G +R   E  A+E                                 + IH 
Sbjct: 485 AASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHT 544

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE--------------NLSVLNSIAW 271
             +  G+  +  V   LID Y K G +  A  +F                + +V+ S++W
Sbjct: 545 QVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSW 604

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG---LAGESEKWIER 328
           ++M++GY Q G     L+ F  +       D+++  +V++A  +AG   L  +   +I+ 
Sbjct: 605 SSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQ- 663

Query: 329 MKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
                K+  GL+ +  + +I    + G L DA  I      + +  +W +++S  A+HG+
Sbjct: 664 -----KIGHGLDVFLGSSIIDMYVKCGSLNDAWLI-FNQAKDRNVVLWTSMISGCALHGQ 717

Query: 387 ADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
              A ++ + +I+  I P ++ ++V V    S  G  +E  +  ++M++
Sbjct: 718 GREAVRLFELMINEGITP-NEVSFVGVLTACSHAGLLEEGCKYFRLMRE 765


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 184/590 (31%), Positives = 296/590 (50%), Gaps = 37/590 (6%)

Query: 21  VHARAL-KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA  L +  Q    + + ++  Y+ S  +  S+ +FN I  P+ + + ++I A++    
Sbjct: 92  VHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGF 151

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +     +     +  F  +  T   + K+   L   ++ G  +H L L++ L    +  +
Sbjct: 152 AERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWM-GKCVHGLILRIGLQFDLYVAT 210

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDV-------------------------------VC 168
           +L+  Y +    ++A KVFD +  RDV                               V 
Sbjct: 211 SLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVS 270

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVG--STMYCVSGALRAAAELAAMEQCRVIHGH 226
           +  MI G++Q+     +LS+F +M   D G       +   L A A+L+ +E+ R IH  
Sbjct: 271 WTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHEL 330

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQS 285
           A   GL+ N  V   L   Y K G + DAR  FD+ N +  N IAWN M+  YA  G   
Sbjct: 331 ACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGL 390

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             +  F  +   G  PD+ +F  +L+   ++GL     K+   M   Y + P +EHY C+
Sbjct: 391 QAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACV 450

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
              +GRAGRL +A ++   MP     ++W +LL+    H   +MA    ++L  + P + 
Sbjct: 451 ADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENT 510

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             YV+++N+ +  GRW EV ++R ++K +  +K  G SWIE+ GK H+FL GD  H + +
Sbjct: 511 GNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGK 570

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT 525
           +IY  L  L E+ +  GY P    +LH++ + EK   L  HSEKLA+AFG+++  P    
Sbjct: 571 EIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILN-TPAETV 629

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           LR+ KNLRIC DCH +  +IS +  RE++VRD+NR+H F  G C+CGD W
Sbjct: 630 LRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 152/320 (47%), Gaps = 20/320 (6%)

Query: 75  SNSPLSLNIFLSMLRHP-TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           S SPL+++  L  L  P +    P   + A +F+    L+   L G  +H+  L   L  
Sbjct: 45  SISPLTISATLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKL-GHQVHAHMLLRGLQP 103

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               GS +V FY+     D++  VF+ I E   + + +MI  +A+      +++ +  M 
Sbjct: 104 TALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMH 163

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           S       +     L+++ EL ++   + +HG  +  GL  ++ V T LI  YGK G ++
Sbjct: 164 SWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEIN 223

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA +VFD N+++ +  +WNA++AGY + G     L +F  +  R       S+  +++  
Sbjct: 224 DAGKVFD-NMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIV----SWTTMISGY 278

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLEDAER------IAMAMP 366
             +GLA ++    + M    K + G+  ++  ++S +    +L   ER      +A  M 
Sbjct: 279 SQSGLAQQALSLFDEM---VKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMG 335

Query: 367 FEPDAAVWRALLSFSAIHGK 386
              +A+V   L++ +A++ K
Sbjct: 336 LNSNASV---LIALTAMYAK 352


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/544 (32%), Positives = 307/544 (56%), Gaps = 4/544 (0%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D  + ++L+  Y++   +  ++++F  +P  + V+W+ +++   ++   L+      R  
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                 ++  +  + + C +  +  + G S+H   L+  +       ++LV  Y++    
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRM-GASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           D A +VF  +  R+ V + AMI GFAQN +  ++L +F +M++S +      +  AL A 
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           + +  ++  R +HG  +V   D N I+GT  ID Y K G ++ A+ +F+  +S  + I W
Sbjct: 321 SNIGFLKLGRSVHGF-IVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNM-ISDRDLILW 378

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NAM+A     G     L LF  +   G  PD  +F ++L+AL ++GL  E + W  RM  
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVN 438

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            +K+ P  +HY CL+  + R+G +E+A  +  +M  EP  A+W ALLS    + K ++  
Sbjct: 439 HFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGE 498

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
            +   ++++ P D     +V+N+ +   +WD+V +VRK+MKD   +K  G S IE++G  
Sbjct: 499 SIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTR 558

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           HVF+  D+ H + E+I +K+A+L  E  ++GY+P  + + H++ +  K + L YHSE+LA
Sbjct: 559 HVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLA 618

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL++  P G  L I+KNLR+C DCH++ KYIS++ +REIVVRD  R+H F +G C+C
Sbjct: 619 IAFGLLNTGP-GTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSC 677

Query: 572 GDLW 575
            D W
Sbjct: 678 RDYW 681



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 172/376 (45%), Gaps = 17/376 (4%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKS-NLLSYSLRLFNHIPSPNIVSWTALISAHS--NS 77
           +HA  + SS A  ++ ++L   Y+++ +L +    L     S +I +W A+I+AHS   S
Sbjct: 30  LHALLIVSSSASHTLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGS 89

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P S    L + R    +  P+  T       CA L      G S+   +      D  F 
Sbjct: 90  PASA---LRVFRALPPAARPDSTTFTLALSACARLGD-LRGGESVRDRAFDAGYKDDVFV 145

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            S+L+H Y+R+ +  +A KVF  +  RD V +  M+ GF    + +D++ ++  MR   V
Sbjct: 146 CSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV 205

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 + G ++A      +     +HGH +  G+  +V+  T L+D Y K G++  A R
Sbjct: 206 KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF   +   N ++W+AM++G+AQ G     L LF  ++  G  PD  + ++ L A  N G
Sbjct: 266 VFGLMVH-RNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIG 324

Query: 318 ---LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
              L      +I R   R+     L   T  I    + G L  A+ +   M  + D  +W
Sbjct: 325 FLKLGRSVHGFIVR---RFDFNCILG--TAAIDMYSKCGSLASAQML-FNMISDRDLILW 378

Query: 375 RALLSFSAIHGKADMA 390
            A+++    HG+   A
Sbjct: 379 NAMIACCGAHGRGQDA 394


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/561 (32%), Positives = 300/561 (53%), Gaps = 6/561 (1%)

Query: 15   STDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
            S + +++    L+S      +   LI+ + +   L  +  +FN +   ++VSWTA++SA 
Sbjct: 554  SQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSAT 613

Query: 75   SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            + +     +     R      +P++ TLA+   TC + S     G  +H+   ++ L   
Sbjct: 614  AENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLA-STTLGLGKVIHACVTEIGLEAD 672

Query: 135  PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
                +AL++ YS       A   F+ ++ RD+V +  M   +AQ     +++ +F  M+ 
Sbjct: 673  IAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQL 732

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
              V       S  L  +   A +   ++ H  A  SGLD +V V TGL+  Y K G + +
Sbjct: 733  EGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDE 792

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            A  +F         +  NA++   AQ G     +++F  ++  G  PD  + +++++A  
Sbjct: 793  AMSLF-RGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACG 851

Query: 315  NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            +AG+  E       MK  + + P LEHY C +  +GRAG+LE AE+I   MPFE +  VW
Sbjct: 852  HAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVW 911

Query: 375  RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
             +LL    + G A++  +  +R+++++P++ +A+V+++N+    G+W +    RK M D 
Sbjct: 912  TSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKMLDE 971

Query: 435  RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
             V+   G SW E+  +VH F+AGDR H +T++IY  L +L     R GY    D+ L +V
Sbjct: 972  NVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELLMRRAGYEA--DKGL-DV 1028

Query: 495  GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
             D  K +AL YHSE++A+AFGL++  P   TL+IVKNLR+C DCH + KYIS V+ REI+
Sbjct: 1029 EDELKEKALGYHSERIAIAFGLIATPPE-TTLKIVKNLRVCGDCHTATKYISMVMGREII 1087

Query: 555  VRDVNRYHRFLNGSCTCGDLW 575
            VRD  R+H F NG+C+C D W
Sbjct: 1088 VRDSLRFHHFSNGTCSCKDCW 1108



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 161/363 (44%), Gaps = 20/363 (5%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS----PLSLN 82
           ++S     + N +I  Y+K   L  ++ +F  IP  ++VSWTA+  A++      P +L 
Sbjct: 160 RASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALR 219

Query: 83  IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142
           IF  ML  P     PN  T  +    C SL      G  LHSL  + SL   P   +AL+
Sbjct: 220 IFREMLLQP---LAPNVITFITALGACTSLRD----GTWLHSLLHEASLGFDPLASNALI 272

Query: 143 HFYSRFRSPDNAKKVFDEI---RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV-- 197
           + Y +    + A  VF  +   +E D+V + AMI    +  R  D++++F  +R   +  
Sbjct: 273 NMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRP 332

Query: 198 -GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
              T+  +  AL  AA        R  HG    SG  R+V++G  +I  Y K G  S A 
Sbjct: 333 NSVTLITILNAL--AASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAW 390

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF       + I+WN M+     +     V+  FH + + G  P++ SF+A+L A  N+
Sbjct: 391 AVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNS 450

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV-WR 375
                  K    +  R +        T L+S  G+ G + +AE +   MP    + V W 
Sbjct: 451 EALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWN 510

Query: 376 ALL 378
            +L
Sbjct: 511 VML 513



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 16/292 (5%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           N LI  Y +   L  +  +F+ +   N+VSWTALISA++       +  +F +ML   + 
Sbjct: 64  NCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSA 123

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH----DKPFCGSALVHFYSRFR 149
           +  PN  TL ++   CA+ S     G S+H++  +L L          G+A+++ Y++  
Sbjct: 124 A--PNSYTLVAMLNACAN-SRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCG 180

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV-DSLSVFADMRSSDVGSTMYCVSGAL 208
           S ++A  VF  I E+DVV + AM   +AQ  R   D+L +F +M    +   +     AL
Sbjct: 181 SLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITAL 240

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VL 266
            A   L        +H     + L  + +    LI+ YGK G    A  VF    S   L
Sbjct: 241 GACTSL---RDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQEL 297

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           + ++WNAM++   + G     + +F  L + G  P+  + + +L AL  +G+
Sbjct: 298 DLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGV 349



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 129/302 (42%), Gaps = 14/302 (4%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           +L ++C   S+    G   H L     L    F G+ L++ Y R  S + A  +F ++ E
Sbjct: 30  ALLQSCVD-SNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEE 88

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           R+VV + A+I   AQ      + ++F  M   S      Y +   L A A    +   R 
Sbjct: 89  RNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRS 148

Query: 223 IHGHAVVSGLDR----NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           IH      GL+R      +VG  +I+ Y K G + DA  VF   +   + ++W AM   Y
Sbjct: 149 IHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVF-LAIPEKDVVSWTAMAGAY 207

Query: 279 AQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           AQ+       L +F  + ++  AP+  +F+  L A C +   G    W+  +     L  
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGA-CTSLRDG---TWLHSLLHEASLGF 263

Query: 338 GLEHYTCLISAMGRAGRLEDAERI--AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
                  LI+  G+ G  E A  +  AMA   E D   W A++S S   G+   A  + +
Sbjct: 264 DPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFR 323

Query: 396 RL 397
           RL
Sbjct: 324 RL 325



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 140/358 (39%), Gaps = 24/358 (6%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSP---NIVSWTALISAHSNSPLSLNIFLSMLRHPTL 93
           N LI  Y K      +  +F  + S    ++VSW A+ISA   +    +      R    
Sbjct: 269 NALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLE 328

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
              PN  TL ++    A+    F      H    +         G+A++  Y++      
Sbjct: 329 GMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSA 388

Query: 154 AKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           A  VF  IR + DV+ +  M+            ++ F  M  + +          L A +
Sbjct: 389 AWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACS 448

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVI---VGTGLIDGYGKAGIVSDARRVFDE-NLSVLNS 268
              A++  R IH  +++    R+ +   V T L+  YGK G +S+A  VF E  L   + 
Sbjct: 449 NSEALDFGRKIH--SLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSL 506

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL-CNAGLAGESEKWIE 327
           + WN M+  YAQ             +   G  PD  SF +VL++  C+       E  + 
Sbjct: 507 VTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS------QEAQVL 560

Query: 328 RMKVRYKLEPGLEHY---TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
           RM +   LE G       T LIS  GR   LE A  +   M    D   W A++S +A
Sbjct: 561 RMCI---LESGYRSACLETALISMHGRCRELEQARSVFNEMD-HGDVVSWTAMVSATA 614


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 199/591 (33%), Positives = 309/591 (52%), Gaps = 53/591 (8%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +HA+ ++S  Q D  + + LI  Y+K      + R+FN +   N VSWT LI     +  
Sbjct: 292 LHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC 351

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S+ +F + +R   ++   +Q  LA+L   C +       G  LHSL LK   +    
Sbjct: 352 FSKSVELF-NQMRAELMAI--DQFALATLISGCFN-RMDLCLGRQLHSLCLKSGHNRAIV 407

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV------------- 183
             ++L+  Y++     NA+ VF  + ERD+V + +MI  ++Q   ++             
Sbjct: 408 VSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRN 467

Query: 184 ------------------DSLSVFADMRSS-DVGSTMYCVSGALRAAAELAAMEQCRVIH 224
                             D L +++ M S  DV           R  A++ A +    I 
Sbjct: 468 AITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQII 527

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           GH V +GL  NV V    I  Y K G +S+A+++FD  L+  + ++WNAM+ GY+Q G  
Sbjct: 528 GHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDL-LNGKDVVSWNAMITGYSQHGMG 586

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
               + F  +  +G  PD  S++AVL+   ++GL  E + + + M   + + PGLEH++C
Sbjct: 587 KQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSC 646

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  +GRAG L +A+ +   MP +P A VW ALLS   IHG  ++A    K + +++  D
Sbjct: 647 MVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPD 706

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
             +Y+++A + S  G+ D+ A+VRK+M+D+ ++K  G SW+EV+ KVHVF A D  H + 
Sbjct: 707 SGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQV 766

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
             I  KL ELME+   LGYV             E   +  +HSEKLA+AFG++S  P   
Sbjct: 767 IAIRNKLDELMEKIAHLGYVRT-----------ESPRSEIHHSEKLAVAFGIMS-LPAWM 814

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + I+KNLRIC DCH   K IS V +RE V+RD  R+H F +GSC+CGD W
Sbjct: 815 PIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 176/379 (46%), Gaps = 42/379 (11%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N ++  Y+K   LS +  LF+ +P  ++ SW  L+S +  +      L  F+SM  H +
Sbjct: 74  HNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSM--HRS 131

Query: 93  LSFLPNQRTLASLFKTCASLS----HAFLFGL--------------SLHSLSLKLSLHD- 133
              LPN  T   + K+C +L        L GL              +L  + ++    D 
Sbjct: 132 GDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDF 191

Query: 134 ---------KP--FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
                    +P  FC ++++  Y++    D+A + F+++ ERDVV +  MI   +Q+ R+
Sbjct: 192 ASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRV 251

Query: 183 VDSLSVFADMRSSDV--GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
            ++L +  +M    V   ST Y  + +L A A L ++   + +H   + S    +  V +
Sbjct: 252 REALGLVVEMHRKGVRLDSTTY--TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVAS 309

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            LI+ Y K G   +A+RVF+ +L   NS++W  ++ G  Q    S  +ELF+ +     A
Sbjct: 310 ALIELYAKCGSFKEAKRVFN-SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
            D+++ LA L + C   +     + +  + ++      +     LIS   + G L++AE 
Sbjct: 369 IDQFA-LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 361 IAMAMPFEPDAAVWRALLS 379
           +  +M  E D   W ++++
Sbjct: 428 VFSSMS-ERDIVSWTSMIT 445



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/495 (20%), Positives = 198/495 (40%), Gaps = 62/495 (12%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           N+++  Y+K   + +++  F  +   ++VSW  +I+A S S     +L + + M R    
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK--- 264

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
               +  T  S    CA L  +  +G  LH+  ++      P+  SAL+  Y++  S   
Sbjct: 265 GVRLDSTTYTSSLTACARL-FSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKE 323

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           AK+VF+ +++R+ V +  +I G  Q      S+ +F  MR+  +    + ++  +     
Sbjct: 324 AKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN 383

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD------------- 260
              +   R +H   + SG +R ++V   LI  Y K G + +A  VF              
Sbjct: 384 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443

Query: 261 -----------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPD 302
                            + +   N+I WNAM+  Y Q G +   L+++  +L  +   PD
Sbjct: 444 ITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
             +++ +     + G     ++ I    V+  L   +      I+   + GR+ +A+++ 
Sbjct: 504 WVTYVTLFRGCADIGANKLGDQIIGH-TVKAGLILNVSVANAAITMYSKCGRISEAQKL- 561

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             +    D   W A+++  + HG    A+K    ++      D  Y+    VLSG     
Sbjct: 562 FDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPD--YISYVAVLSGCSHSG 619

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
            V E              G+ + ++  +VH    G        D+  +   L E  + + 
Sbjct: 620 LVQE--------------GKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLID 665

Query: 483 YVP------VWDEML 491
            +P      VW  +L
Sbjct: 666 KMPMKPTAEVWGALL 680



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 48/97 (49%)

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           ++ ALR+     A+   R +HG  V  GL   V +   L+  Y   G +SDARR+   ++
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
              N I  N MM GYA+QG  S   ELF  +  R  A
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVA 103



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/301 (19%), Positives = 123/301 (40%), Gaps = 43/301 (14%)

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGS 199
           +++ Y++  S  +A+++FD +  RDV  +  ++ G+ Q  R +D L  F  M RS D   
Sbjct: 77  MMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLP 136

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             +     +++   L   E    + G         +  V T L+D + + G V  A R+F
Sbjct: 137 NAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLF 196

Query: 260 D------------------------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
                                          E+++  + ++WN M+A  +Q G     L 
Sbjct: 197 SQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALG 256

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY-KLEPGLEHY--TCLI 346
           L   +  +G   D  ++ + LTA       G    W +++  +  +  P ++ Y  + LI
Sbjct: 257 LVVEMHRKGVRLDSTTYTSSLTACARLFSLG----WGKQLHAKVIRSLPQIDPYVASALI 312

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRAL----LSFSAIHGKADMASKMGKRLIDINP 402
               + G  ++A+R+  ++  + ++  W  L    L +       ++ ++M   L+ I+ 
Sbjct: 313 ELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQ 371

Query: 403 Y 403
           +
Sbjct: 372 F 372


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/544 (32%), Positives = 306/544 (56%), Gaps = 4/544 (0%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D  + ++L+  Y++   +  ++++F+ +P  + V+W+ +++   ++   L+      R  
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                 ++  +  + + C +  +  + G S+H   L+  +       ++LV  Y++    
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRM-GASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           D A +VF  +  R+ V + AMI GFAQN +  ++L +F +M++S +      +  AL A 
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           + +  ++  R +HG  +V   D N I+GT  ID Y K G ++ A+ +F+  +S  + I W
Sbjct: 321 SNIGFLKLGRSVHGF-IVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNM-ISDRDLILW 378

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NAM+A     G     L LF  +   G  PD  +F ++L+AL ++GL  E + W   M  
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVN 438

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            +K+ P  +HY CL+  + R+G +E+A  +  +M  EP  A+W ALLS    + K ++  
Sbjct: 439 HFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGE 498

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
            +   ++++ P D     +V+N+ +   +WD+V +VRK+MKD   +K  G S IE++G  
Sbjct: 499 SIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTR 558

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H FL  D+ H + E+I +K+A+L  E  ++GY+P  + + H++ +  K + L YHSEKLA
Sbjct: 559 HAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLA 618

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL++  P G  L I+KNLR+C DCH++ KYIS++ +REIVVRD  R+H F +G C+C
Sbjct: 619 IAFGLLNTGP-GTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSC 677

Query: 572 GDLW 575
            D W
Sbjct: 678 RDYW 681



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 19/377 (5%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKS-NLLSYSLRLFNHIPSPNIVSWTALISAHS--NS 77
           +HA  + SS A  ++ ++L   Y+++ +L +    L     S +I +W A+I+AHS   S
Sbjct: 30  LHALLIVSSSATHTLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGS 89

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P S    L + R    +  P+  T       CA L      G S+   +      D  F 
Sbjct: 90  PASA---LRVFRALPPAARPDSTTFTLALSACARLGD-LRGGESVRDRAFDAGYKDDVFV 145

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            S+L+H Y+R+ +  +A KVFD +  RD V +  M+ GF    + +D++ ++  MR   V
Sbjct: 146 CSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGV 205

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 + G ++A      +     +HGH +  G+  +V+  T L+D Y K G++  A R
Sbjct: 206 KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 258 VFDENLSV-LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           VF   L V  N ++W+AM++G+AQ G     L LF  ++  G  PD  + ++ L A  N 
Sbjct: 266 VF--GLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNI 323

Query: 317 G---LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           G   L      +I R   R+     L   T  I    + G L  A+ +   M  + D  +
Sbjct: 324 GFLKLGRSVHGFIVR---RFDFNCILG--TAAIDMYSKCGSLASAQML-FNMISDRDLIL 377

Query: 374 WRALLSFSAIHGKADMA 390
           W A+++    HG+   A
Sbjct: 378 WNAMIACCGAHGRGQDA 394


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/548 (33%), Positives = 295/548 (53%), Gaps = 9/548 (1%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP---LSLNIFLSM 87
            D    N LI  Y+K      +  +F+ +   +IVSW  +I+ +++S     +L +F  M
Sbjct: 90  TDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRM 149

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
            R  T     ++ TL+S    CA+  +A      LH+++LKL+L    F G+A++  Y++
Sbjct: 150 HREGTH---MSEFTLSSTICACAA-KYAINECKQLHTIALKLALDSNSFVGTAILDVYAK 205

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
                +A  VF+++ ER +V + ++  G+ QN    ++L +F   +   V  T + +S  
Sbjct: 206 CNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAI 265

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A A LA   +   +H   +  G   N  V   L+D Y + G +  A  +F   +   N
Sbjct: 266 LSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALF-AYMEHKN 324

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            + WNAM+A +++       + LF  ++  G  P+E ++L+VL+   +AGL  +   +  
Sbjct: 325 VVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFS 384

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            +     +EP + HY+C++  +GR+G+ ++A  +   MPFEP A++W +LL     +   
Sbjct: 385 LLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNI 444

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
            +A    ++L  + P +   +V+++NV +  G W+ V   RK +KD   +KE GRSWIE 
Sbjct: 445 RLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEA 504

Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
           KGKVHVF+ G+R H R  DIY KL E+  E  +       +  LH+V   +K E L +HS
Sbjct: 505 KGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDLHDVHAEQKEELLKHHS 564

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
           EKLAL+FGL+S  P    + I KNLRIC DCH   K  + + ER ++VRD NR+H F +G
Sbjct: 565 EKLALSFGLIS-LPSNIPIIIHKNLRICGDCHSFMKIAAHITERLVIVRDTNRFHHFKDG 623

Query: 568 SCTCGDLW 575
           SC+CGD W
Sbjct: 624 SCSCGDFW 631



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 141/306 (46%), Gaps = 4/306 (1%)

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
           + L G S H L++   L       + L++ Y++    D A+ VFD +  R +V +  MI 
Sbjct: 72  SLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIA 131

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           G+  +   V +L +F+ M       + + +S  + A A   A+ +C+ +H  A+   LD 
Sbjct: 132 GYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDS 191

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           N  VGT ++D Y K  ++ DA  VF E +     + W+++ AGY Q G     L LF   
Sbjct: 192 NSFVGTAILDVYAKCNMIKDACWVF-EKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCA 250

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
           +  G    E++  A+L+A  +  L  E  + +  + ++            L+    R G+
Sbjct: 251 QREGVELTEFTLSAILSACASLALKIEGIQ-LHAVILKCGFHGNFFVAASLVDVYARCGQ 309

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY-DDSAYVIVAN 413
           +E A  +   M    +  +W A+++  + H  +  A  + +++  +  + ++  Y+ V +
Sbjct: 310 IEKAYALFAYME-HKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLS 368

Query: 414 VLSGVG 419
           V S  G
Sbjct: 369 VCSHAG 374



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           +S  L+  A+  ++   +  HG A+  GL  + +    LI+ Y K G    AR VFD  +
Sbjct: 60  ISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDI-M 118

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
            V + ++WN M+AGY   G+    L+LF  +   G    E++  + + A C A  A    
Sbjct: 119 HVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICA-CAAKYAINEC 177

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           K +  + ++  L+      T ++    +   ++DA  +   MP E     W +L +
Sbjct: 178 KQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMP-ERTLVTWSSLFA 232


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/592 (30%), Positives = 314/592 (53%), Gaps = 41/592 (6%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   LK   Q +  ++  L+  Y     L  +  +F+  P  ++++W  +ISA++  
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 218

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                S  +FL M        LP   TL  +   C+ L      G  +HS      +   
Sbjct: 219 GKFEESRRLFLVM---EDKQVLPTTVTLVLVLSACSKLKD-LRTGKKVHSYVKNCKVESN 274

Query: 135 PFCGSALVHFYSR----------FRSPDN---------------------AKKVFDEIRE 163
               +A++  Y+           FRS +N                     A+  FD++ E
Sbjct: 275 LVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPE 334

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           +D V + AMI G+ +++R  ++L +F +M++++V    + +   L A A L A+E    I
Sbjct: 335 KDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWI 394

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
             +   + +  ++ V   LID Y K G V  A  +F E +S  +   W AM+ G A  G 
Sbjct: 395 RTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFRE-MSQRDKFTWTAMIVGLAVNGH 453

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               L++F  +      PDE +++ VL+A  + GL  +  K+  RM  ++ +EP + HY 
Sbjct: 454 GEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 513

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
           CL+  + RAGRL++A  +   MP + ++ VW ALL+   ++ ++DMA  + K+++++ P 
Sbjct: 514 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 573

Query: 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER 463
           + + YV++ N+ +   RW+++ E+R++M D+ ++K  G S IE+ G+VH F+AGDR H +
Sbjct: 574 NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQ 633

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
           T++I  KL ++ ++ +  GY P   E+  ++ + +K  +++ HSEKLA+AFGL++  P G
Sbjct: 634 TKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPP-G 692

Query: 524 KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            T+RI KNLR+C DCH   K +S+V  RE++VRD  R+H F +G C+C D W
Sbjct: 693 VTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 188/441 (42%), Gaps = 45/441 (10%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAHSN- 76
           VH +A+K       +  N +  +  ++      Y+ RLF+ IP PN+  W  +I  +S  
Sbjct: 58  VHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRL 117

Query: 77  --SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
               L ++++L MLR       P++ T   LFK   +   A  +G  LH   LK  L   
Sbjct: 118 DFPQLGVSLYLEMLRR---GVKPDRYTFPFLFKG-FTRDIALEYGRQLHGHVLKHGLQYN 173

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  +ALV  Y      D A+ VFD   + DV+ +  +I  + +  +  +S  +F  M  
Sbjct: 174 VFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMED 233

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG---- 250
             V  T   +   L A ++L  +   + +H +     ++ N+++   +ID Y   G    
Sbjct: 234 KQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDS 293

Query: 251 ------------------IVS--------DARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
                             IVS        D  R + + +   + ++W AM+ GY +    
Sbjct: 294 ALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRF 353

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              LELF  ++     PDE++ ++VLTA  + G A E  +WI     R K++  L     
Sbjct: 354 KEALELFRNMQATNVKPDEFTMVSVLTACAHLG-ALELGEWIRTYIDRNKIKNDLFVRNA 412

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINP 402
           LI    + G ++ AE I   M  + D   W A++   A++G  + A  M   ++   I P
Sbjct: 413 LIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILP 471

Query: 403 YDDSAYVIVANVLSGVGRWDE 423
            D+  Y+ V +  +  G  D+
Sbjct: 472 -DEITYIGVLSACTHTGLVDK 491



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 149/357 (41%), Gaps = 30/357 (8%)

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--------FCGSALVHFY 145
           SF P    L SL +TC S+         +H  ++K  L+  P        FC +   H Y
Sbjct: 34  SFSPPTHPLISLLETCESMDQL----QQVHCQAIKKGLNANPVLQNRVMTFCCT---HEY 86

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205
             F+    A+++FDEI E ++  +  MI G+++       +S++ +M    V    Y   
Sbjct: 87  GDFQY---ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFP 143

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
              +      A+E  R +HGH +  GL  NV V T L+  Y   G +  AR VFD     
Sbjct: 144 FLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDV-CPK 202

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            + I WN +++ Y + G       LF ++E +   P   + + VL+A C+      + K 
Sbjct: 203 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA-CSKLKDLRTGKK 261

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +       K+E  L     +I      G ++ A  I  +M    D   W  ++S     G
Sbjct: 262 VHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSGFTNLG 320

Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGV---GRWDEVAEVRKVMKDRRVRKE 439
           + D+A    +   D  P  D  YV    ++ G     R+ E  E+ + M+   V+ +
Sbjct: 321 EIDVA----RNYFDKMPEKD--YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPD 371


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/592 (30%), Positives = 314/592 (53%), Gaps = 41/592 (6%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   LK   Q +  ++  L+  Y     L  +  +F+  P  ++++W  +ISA++  
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 197

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                S  +FL M        LP   TL  +   C+ L      G  +HS      +   
Sbjct: 198 GKFEESRRLFLVM---EDKQVLPTTVTLVLVLSACSKLKD-LRTGKKVHSYVKNCKVESN 253

Query: 135 PFCGSALVHFYSR----------FRSPDN---------------------AKKVFDEIRE 163
               +A++  Y+           FRS +N                     A+  FD++ E
Sbjct: 254 LVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPE 313

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           +D V + AMI G+ +++R  ++L +F +M++++V    + +   L A A L A+E    I
Sbjct: 314 KDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWI 373

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
             +   + +  ++ V   LID Y K G V  A  +F E +S  +   W AM+ G A  G 
Sbjct: 374 RTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFRE-MSQRDKFTWTAMIVGLAVNGH 432

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               L++F  +      PDE +++ VL+A  + GL  +  K+  RM  ++ +EP + HY 
Sbjct: 433 GEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 492

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
           CL+  + RAGRL++A  +   MP + ++ VW ALL+   ++ ++DMA  + K+++++ P 
Sbjct: 493 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 552

Query: 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER 463
           + + YV++ N+ +   RW+++ E+R++M D+ ++K  G S IE+ G+VH F+AGDR H +
Sbjct: 553 NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQ 612

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
           T++I  KL ++ ++ +  GY P   E+  ++ + +K  +++ HSEKLA+AFGL++  P G
Sbjct: 613 TKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPP-G 671

Query: 524 KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            T+RI KNLR+C DCH   K +S+V  RE++VRD  R+H F +G C+C D W
Sbjct: 672 VTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 188/441 (42%), Gaps = 45/441 (10%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAHSN- 76
           VH +A+K       +  N +  +  ++      Y+ RLF+ IP PN+  W  +I  +S  
Sbjct: 37  VHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRL 96

Query: 77  --SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
               L ++++L MLR       P++ T   LFK   +   A  +G  LH   LK  L   
Sbjct: 97  DFPQLGVSLYLEMLRR---GVKPDRYTFPFLFKG-FTRDIALEYGRQLHGHVLKHGLQYN 152

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F  +ALV  Y      D A+ VFD   + DV+ +  +I  + +  +  +S  +F  M  
Sbjct: 153 VFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMED 212

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG---- 250
             V  T   +   L A ++L  +   + +H +     ++ N+++   +ID Y   G    
Sbjct: 213 KQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDS 272

Query: 251 ------------------IVS--------DARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
                             IVS        D  R + + +   + ++W AM+ GY +    
Sbjct: 273 ALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRF 332

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              LELF  ++     PDE++ ++VLTA  + G A E  +WI     R K++  L     
Sbjct: 333 KEALELFRNMQATNVKPDEFTMVSVLTACAHLG-ALELGEWIRTYIDRNKIKNDLFVRNA 391

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINP 402
           LI    + G ++ AE I   M  + D   W A++   A++G  + A  M   ++   I P
Sbjct: 392 LIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILP 450

Query: 403 YDDSAYVIVANVLSGVGRWDE 423
            D+  Y+ V +  +  G  D+
Sbjct: 451 -DEITYIGVLSACTHTGLVDK 470



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 149/357 (41%), Gaps = 30/357 (8%)

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--------FCGSALVHFY 145
           SF P    L SL +TC S+         +H  ++K  L+  P        FC +   H Y
Sbjct: 13  SFSPPTHPLISLLETCESMDQL----QQVHCQAIKKGLNANPVLQNRVMTFCCT---HEY 65

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205
             F+    A+++FDEI E ++  +  MI G+++       +S++ +M    V    Y   
Sbjct: 66  GDFQY---ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFP 122

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
              +      A+E  R +HGH +  GL  NV V T L+  Y   G +  AR VFD     
Sbjct: 123 FLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDV-CPK 181

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            + I WN +++ Y + G       LF ++E +   P   + + VL+A C+      + K 
Sbjct: 182 ADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA-CSKLKDLRTGKK 240

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +       K+E  L     +I      G ++ A  I  +M    D   W  ++S     G
Sbjct: 241 VHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSGFTNLG 299

Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGV---GRWDEVAEVRKVMKDRRVRKE 439
           + D+A    +   D  P  D  YV    ++ G     R+ E  E+ + M+   V+ +
Sbjct: 300 EIDVA----RNYFDKMPEKD--YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPD 350


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 310/559 (55%), Gaps = 15/559 (2%)

Query: 19   RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            R+VH  ++K+    + S+ N L+  YS  +    + ++F  +   N+VSWTA+I+++  +
Sbjct: 538  RVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRA 597

Query: 78   PLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             L  +    +L+   L  + P+   + S     A    +   G S+H  +++  +     
Sbjct: 598  GL-FDKVAGLLQEMVLDGIRPDVFAVTSALHAFAG-DESLKQGKSVHGYTIRNGMEKLLP 655

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM---- 192
              +AL+  Y + R+ + A+ +FD +  +DV+ +  +I G+++N+   +S S+F+DM    
Sbjct: 656  VANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQF 715

Query: 193  RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
            R + V  TM C+   L AAA ++++E+ R IH +A+  G   +      L+D Y K G +
Sbjct: 716  RPNAV--TMTCI---LPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGAL 770

Query: 253  SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
              AR +FD  L+  N I+W  M+AGY   G     + LF  +   G  PD  SF A+L A
Sbjct: 771  LVARVLFDR-LTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYA 829

Query: 313  LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             C++GLA E  ++ + M+  YK+EP L+HYTC++  + R G L++A     +MP EPD++
Sbjct: 830  CCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSS 889

Query: 373  VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            +W +LL    IH    +A K+  ++  + P +   YV++AN+ +   RW+ V +++  + 
Sbjct: 890  IWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIG 949

Query: 433  DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
             R +R+  G SWIEV+ KVHVF+A +R H     I   L ++     + G+ P     L 
Sbjct: 950  GRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDPKKKYALM 1009

Query: 493  NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
               D    EAL  HS KLA+AFG+++  P G+ +R+ KN ++C  CHE+ K+IS++  RE
Sbjct: 1010 GADDAVHDEALCGHSSKLAVAFGVLN-LPEGRPIRVTKNSKVCSHCHEAAKFISKMCNRE 1068

Query: 553  IVVRDVNRYHRFLNGSCTC 571
            I++RD +R+HRF  G C+C
Sbjct: 1069 IILRDSSRFHRFEGGRCSC 1087



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 143/282 (50%), Gaps = 3/282 (1%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH 90
           A  ++ N LI+ Y+KSN++  ++ +FN +P  + +SW ++IS  S++ L+       +R 
Sbjct: 450 AQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRM 509

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
            T     +  TL S+   CA  S  +  G  +H  S+K  L  +    +AL+  YS    
Sbjct: 510 WTQGQELDSVTLLSVLPACAQ-SRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSD 568

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
             +  ++F  + +++VV + AMI  + +         +  +M    +   ++ V+ AL A
Sbjct: 569 WQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHA 628

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A   +++Q + +HG+ + +G+++ + V   L++ Y K   V +AR +FD  ++  + I+
Sbjct: 629 FAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDR-VTNKDVIS 687

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           WN ++ GY++    +    LF  + ++ F P+  +   +L A
Sbjct: 688 WNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPA 728



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 166/362 (45%), Gaps = 21/362 (5%)

Query: 39  LITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHSNSPLSLNIFLSMLRH-PTLSF 95
           L+  Y K   L  +  +F+ +P  + ++  WT+L+SA++ +       +S+ R       
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAG-DFQEAVSLFRQMQCCGV 200

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P+   ++ + K  +SL  +   G  +H L  KL L       +AL+  YSR    ++A 
Sbjct: 201 SPDAHAVSCVLKCVSSLG-SLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAA 259

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           +VFD +  RD + + +MI G   N     ++ +F+ M S     +   V   L A A L 
Sbjct: 260 RVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLG 319

Query: 216 AMEQCRVIHGHAVVSGL----------DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
                + +HG++V SGL            +  +G+ L+  Y K G ++ ARRVFD   S 
Sbjct: 320 YGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSK 379

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            N   WN +M GYA+ G+    L LF  +   G APDE++   +L   C   L+   +  
Sbjct: 380 GNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLK--CITCLSCARDGL 437

Query: 326 IERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           +    +  KL  G +   C  LIS   ++  + DA  +   MP + D   W +++S  + 
Sbjct: 438 VAHGYI-VKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQ-DTISWNSVISGCSS 495

Query: 384 HG 385
           +G
Sbjct: 496 NG 497



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 152/331 (45%), Gaps = 26/331 (7%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA-HSNS--PLSLNIFLSMLRH 90
           ++ N LI  YS+   +  + R+F+ +   + +SW ++I    SN     ++++F  M   
Sbjct: 240 AVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQ 299

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH----------DKPFCGSA 140
            T     +  T+ S+   CA L +  L G ++H  S+K  L           D    GS 
Sbjct: 300 GT---EISSVTVLSVLPACAGLGYG-LIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSK 355

Query: 141 LVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           LV  Y +     +A++VFD +  + +V  +  ++ G+A+     +SLS+F  M    +  
Sbjct: 356 LVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAP 415

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             + +S  L+    L+      V HG+ V  G      V   LI  Y K+ ++ DA  VF
Sbjct: 416 DEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVF 475

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           +  +   ++I+WN++++G +  G  S  +ELF  +  +G   D  + L+VL A       
Sbjct: 476 NR-MPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPA------C 528

Query: 320 GESEKWIE-RMKVRYKLEPGLEHYTCLISAM 349
            +S  W   R+   Y ++ GL   T L +A+
Sbjct: 529 AQSRYWFAGRVVHGYSVKTGLIGETSLANAL 559



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 132/293 (45%), Gaps = 9/293 (3%)

Query: 25  ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNS---PLS 80
           +++S   D ++ + L+  Y K   ++ + R+F+ + S  N+  W  ++  ++       S
Sbjct: 342 SVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEES 401

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
           L++F+ M     L   P++  ++ L K    LS A   GL  H   +KL    +    +A
Sbjct: 402 LSLFVQM---HELGIAPDEHAISCLLKCITCLSCA-RDGLVAHGYIVKLGFGAQCAVCNA 457

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           L+ FY++     +A  VF+ +  +D + + ++I G + N    +++ +F  M +      
Sbjct: 458 LISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELD 517

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
              +   L A A+       RV+HG++V +GL     +   L+D Y          ++F 
Sbjct: 518 SVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIF- 576

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            ++   N ++W AM+  Y + G    V  L   + + G  PD ++  + L A 
Sbjct: 577 RSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAF 629



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 7/173 (4%)

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI-AWNAMMAGYAQQGDQSTVLELFH 292
           +  ++G  L+  Y K G + +AR VFD        +  W ++M+ YA+ GD    + LF 
Sbjct: 134 KGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFR 193

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
            ++  G +PD ++   VL  + + G   E E  I  +  +  L         LI+   R 
Sbjct: 194 QMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEV-IHGLLEKLGLGQACAVANALIAVYSRC 252

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLS--FS-AIHGKA-DMASKMGKRLIDIN 401
           GR+EDA R+  +M    DA  W +++   FS   HG A D+ SKM  +  +I+
Sbjct: 253 GRMEDAARVFDSM-HPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEIS 304


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/544 (32%), Positives = 290/544 (53%), Gaps = 52/544 (9%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSM----LRHP 91
           L+  Y+K   L+ +  + + +   ++V W ++I     H     +L +F  M    +R  
Sbjct: 277 LVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRID 336

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
             ++    ++LAS    C +L      G S+HSL++K          +ALV  Y++  + 
Sbjct: 337 DFTYPSVLKSLAS----CKNLK----IGESVHSLTIKTGFDACKTVSNALVDMYAKQGNL 388

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A  VF++I ++DV+ + +++ G+  N     +L +F DMR++ V    + V+    A 
Sbjct: 389 SCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSAC 448

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           AEL  +E  R +H + + S     +     LI  Y K G + DA RVFD ++   N I+W
Sbjct: 449 AELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFD-SMETRNVISW 507

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            A++ GYAQ G                                   L    + + E M+ 
Sbjct: 508 TAIIVGYAQNG-----------------------------------LVETGQSYFESMEK 532

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y ++P  +HY C+I  +GRAG++ +AE +   M  EPDA +W++LLS   +HG  ++  
Sbjct: 533 VYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGE 592

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           + GK LI + P +   YV+++N+ S  GRW++ A +R+ MK   + KE G SWIE+K +V
Sbjct: 593 RAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEMKSQV 652

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F++ DR H    +IY+K+ E+M   +  G+VP  +  L ++ +  K  +L YHSEKLA
Sbjct: 653 HTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLA 712

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL++ A +G  +RI KNLR+C DCH + KYIS + +R I++RD+N +H F+ G C+C
Sbjct: 713 VAFGLLTVA-KGAPIRIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSC 771

Query: 572 GDLW 575
           GD W
Sbjct: 772 GDFW 775



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 195/425 (45%), Gaps = 21/425 (4%)

Query: 15  STDPRIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           S + R+  AR L  +    D+  +N +I+ Y+    L  + +LFN  P  N ++W++L+S
Sbjct: 48  SKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVS 107

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            +  +   +       +  +    P+Q TL S+ + C++LS     G  +H  ++K+ L 
Sbjct: 108 GYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLS-LLHTGKMIHCYAIKIQLE 166

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFAD 191
              F  + LV  YS+ +    A+ +F  + +R + V + AM+ G+AQN   + ++  F +
Sbjct: 167 ANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKE 226

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR+  + S  +     L A   ++A    R +HG  + SG   NV V + L+D Y K G 
Sbjct: 227 MRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGD 286

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           ++ AR + D  + + + + WN+M+ G    G     L LFH +  R    D++++ +VL 
Sbjct: 287 LASARMILD-TMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLK 345

Query: 312 AL--CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           +L  C     GES   +  + ++   +        L+    + G L  A  +   +  + 
Sbjct: 346 SLASCKNLKIGES---VHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKI-LDK 401

Query: 370 DAAVWRALLS---FSAIHGKA-DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           D   W +L++    +  H KA  +   M    +D++ +      +VA V S       + 
Sbjct: 402 DVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQF------VVACVFSACAELTVIE 455

Query: 426 EVRKV 430
             R+V
Sbjct: 456 FGRQV 460



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 179/410 (43%), Gaps = 10/410 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISAHSN 76
           +++H  A+K   +A+  +   L+  YSK   L  +  LF  +P   N V WTA+++ ++ 
Sbjct: 154 KMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQ 213

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +  SL                N  T  S+   C S+S A+ FG  +H   +        +
Sbjct: 214 NGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSIS-AYAFGRQVHGCIIWSGFGPNVY 272

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             SALV  Y++     +A+ + D +   DVVC+ +MIVG   +  + ++L +F  M + D
Sbjct: 273 VQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRD 332

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +    +     L++ A    ++    +H   + +G D    V   L+D Y K G +S A 
Sbjct: 333 IRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCAL 392

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF++ L   + I+W +++ GY   G     L+LF  +       D++    V +A C  
Sbjct: 393 DVFNKILDK-DVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSA-CAE 450

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               E  + +    ++      L     LI+   + G LEDA R+  +M    +   W A
Sbjct: 451 LTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSME-TRNVISWTA 509

Query: 377 LLSFSAIHGKADMAS---KMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           ++   A +G  +      +  +++  I P  D  Y  + ++L   G+ +E
Sbjct: 510 IIVGYAQNGLVETGQSYFESMEKVYGIKPASDH-YACMIDLLGRAGKINE 558


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 180/550 (32%), Positives = 299/550 (54%), Gaps = 11/550 (2%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
           +SS  D   Y  LI  Y+ +  +  + ++F+ IP  ++VSW ALIS ++   N   +L +
Sbjct: 163 QSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALEL 222

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M++    +  P++ T+ ++   CA  S +   G  +HS              +AL+ 
Sbjct: 223 FKEMMK---TNVKPDESTMVTVLSACAQ-SASIELGRQVHSWIDDHGFGSNLKIVNALID 278

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            Y +    + A  +F+ +  +DV+ +  +I G+   +   ++L +F +M  S        
Sbjct: 279 LYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVT 338

Query: 204 VSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           +   L A A L A++  R IH +    + G+     + T LID Y K G +  A++VFD 
Sbjct: 339 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDS 398

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            L+   S +WNAM+ G+A  G  +   ++F  +   G  PD+ +F+ +L+A  ++G+   
Sbjct: 399 MLNRSLS-SWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDL 457

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
                  M   YK+ P LEHY C+I  +G +G  ++AE +  +M  +PD  +W +LL   
Sbjct: 458 GRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKAC 517

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
            +HG  ++     + LI I P +  +YV+++N+ +  GRW+EVA+ R ++ D+ ++K  G
Sbjct: 518 KMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPG 577

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
            S IE+   VH F+ GD++H R  +IY  L E+    E  G+VP   E+L  + +  K  
Sbjct: 578 CSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEG 637

Query: 502 ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
           AL +HSEKLA+AFGL+S  P G  L IVKNLR+CR+CHE+ K IS++ +REI+ RD  R+
Sbjct: 638 ALRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRF 696

Query: 562 HRFLNGSCTC 571
           H F +G C+C
Sbjct: 697 HHFXDGVCSC 706



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 211/456 (46%), Gaps = 70/456 (15%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNL------------LSYSLRLFNHIPSPNIVS 66
           RI+HA+ +K+      ++N   TNY+ S L            L+Y++ +F+ I  PN++ 
Sbjct: 19  RIIHAKMIKTG-----LHN---TNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLI 70

Query: 67  WTALISAH--SNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           W  +   H  S+ P+S L +++ M+   +L  +PN  T   L K CA  S AF  G  +H
Sbjct: 71  WNTMFRGHALSSDPVSALYLYVCMI---SLGLVPNSYTFPFLLKACAK-SKAFREGQQIH 126

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
              LKL      +  ++L+  Y +    ++A+KVFD+   RDVV Y A+I G+A N  + 
Sbjct: 127 GHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIX 186

Query: 184 DSLSVFADMRSSDVGSTMYCVSG-------------------------------ALRAAA 212
            +  +F ++   DV S    +SG                                L A A
Sbjct: 187 SAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACA 246

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           + A++E  R +H      G   N+ +   LID Y K G V  A  +F E LS  + I+WN
Sbjct: 247 QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLF-EGLSYKDVISWN 305

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
            ++ GY         L LF  +   G +P+E + L++L A  + G A +  +WI  + + 
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLG-AIDIGRWI-HVYID 363

Query: 333 YKLEPGLEH----YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
            +L+ G+ +     T LI    + G +E A+++  +M      + W A++   A+HG+A+
Sbjct: 364 KRLK-GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHGRAN 421

Query: 389 MASKMGKRLID--INPYDDSAYVIVANVLSGVGRWD 422
            A  +  R+    I P DD  +V + +  S  G  D
Sbjct: 422 PAFDIFSRMRKDGIEP-DDITFVGLLSACSHSGMLD 456



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 139/325 (42%), Gaps = 55/325 (16%)

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY---S 146
           HP+LS L N +TL SL                +H+  +K  LH+  +  S L+ F     
Sbjct: 3   HPSLSLLHNCKTLQSL--------------RIIHAKMIKTGLHNTNYALSKLIEFSVLSP 48

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
            F     A  VFD I+E +++ +  M  G A +S  V +L ++  M S  +    Y    
Sbjct: 49  HFDGLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPF 108

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN---- 262
            L+A A+  A  + + IHGH +  G D ++ V T LI  Y K G   DAR+VFD++    
Sbjct: 109 LLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRD 168

Query: 263 --------------------------LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
                                     + V + ++WNA+++GYA+ G+    LELF  +  
Sbjct: 169 VVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMK 228

Query: 297 RGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
               PDE + + VL+A   +    L  +   WI+     +     L+    LI    + G
Sbjct: 229 TNVKPDESTMVTVLSACAQSASIELGRQVHSWID----DHGFGSNLKIVNALIDLYIKCG 284

Query: 354 RLEDAERIAMAMPFEPDAAVWRALL 378
            +E A  +   + ++ D   W  L+
Sbjct: 285 EVETASGLFEGLSYK-DVISWNTLI 308


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/437 (36%), Positives = 261/437 (59%), Gaps = 2/437 (0%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           + ++H ++       AKK+FD   ERD++ + +MI  +A+  +  ++L +F +M+ ++V 
Sbjct: 206 NTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVL 265

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                +   L A  ++ A+   ++IH     + ++ ++ +GT L+D Y K G + ++ RV
Sbjct: 266 PDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRV 325

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F+  ++  +  AW+AM+ G A  G     L+ F  +      P++ +F+ VL+A  + GL
Sbjct: 326 FN-GMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGL 384

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             E   +   M   Y + P +EHY C++  +GRAGRL++A  +  +MPF PDA VWRALL
Sbjct: 385 VDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALL 444

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               I+   ++A +    L+++ P+ D  YV+++N+ S    WD+V  VR++MK+  ++K
Sbjct: 445 GACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQK 504

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
             G S IEV   VH F+AGD+ H  ++ I   L+E+    +  GY P+   +L +  ++E
Sbjct: 505 VPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKE 564

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K  AL +HSEKLA+AFGL+S AP G T+RIVKNLR+C DCH + K ISR  +R I+VRD 
Sbjct: 565 KENALAHHSEKLAIAFGLLSTAP-GSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDR 623

Query: 559 NRYHRFLNGSCTCGDLW 575
           NR+H F+NGSC+C D W
Sbjct: 624 NRFHHFVNGSCSCKDYW 640



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 173/387 (44%), Gaps = 55/387 (14%)

Query: 44  SKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP---LSLNIFLSMLRHPTLSFLPNQR 100
           S +N L Y+  +F+ IPSP+   W  +I A+ NS     S+++F  M     +    +  
Sbjct: 49  SSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPI--DSY 106

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           +L+ + + C  L      G  LH+  LK+ L    F  +AL+  Y++F   + A+ + DE
Sbjct: 107 SLSLVIQACGRLKDPG-NGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDE 165

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS--TMYCVSGALRAAAELAAME 218
           +   D+V Y  ++  + +   +  +  +F  M   D+ S  TM                 
Sbjct: 166 MAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTM----------------- 208

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
               IHGHA +                    G V  A+++FD      + I+W++M+A Y
Sbjct: 209 ----IHGHASL--------------------GDVGTAKKLFDRTCE-RDLISWSSMIAAY 243

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A+    +  L LFH +++    PD+ + ++VL+A  + G  G   K I     R ++E  
Sbjct: 244 AKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMG-KMIHECIERNRIEID 302

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           L+  T L+    + G ++++ R+   M    D   W A++   A HG  ++A     ++I
Sbjct: 303 LKLGTSLVDMYAKCGDIDNSLRVFNGMN-NRDVFAWSAMIMGLANHGFGELALDHFSKMI 361

Query: 399 --DINPYDDSAYVIVANVLSGVGRWDE 423
             DI P +D  ++ V +  S +G  DE
Sbjct: 362 SEDIKP-NDVTFIGVLSACSHIGLVDE 387



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 138/309 (44%), Gaps = 31/309 (10%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS- 94
           +N +I  ++    +  + +LF+     +++SW+++I+A++ +  S N  L +     L+ 
Sbjct: 205 WNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQS-NEALRLFHEMQLAN 263

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
            LP++ T+ S+   C  +  A   G  +H    +  +      G++LV  Y++    DN+
Sbjct: 264 VLPDKVTMVSVLSACGDVG-ALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNS 322

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
            +VF+ +  RDV  + AMI+G A +     +L  F+ M S D+        G L A + +
Sbjct: 323 LRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHI 382

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGL------IDGYGKAGIVSDARRVFDENLSVLNS 268
             +++     G    + + +   V   +      +D  G+AG + +A  +        ++
Sbjct: 383 GLVDE-----GWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDA 437

Query: 269 IAWNAMMAG-----YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
           I W A++         +  +++TV    +LLE+       Y  L        + +  +++
Sbjct: 438 IVWRALLGACRIYKNVEIAEEATV----NLLELEPHVDGNYVLL--------SNIYSQAK 485

Query: 324 KWIERMKVR 332
           +W + + VR
Sbjct: 486 EWDKVVNVR 494


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 303/559 (54%), Gaps = 19/559 (3%)

Query: 28  SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIF 84
           SS  D      LIT Y+       + ++F+ I   ++VSW A+I+ +  +     +L +F
Sbjct: 125 SSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELF 184

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS----- 139
             M+R    +  P++ TL S+   CA  S +   G  +HS  +     D  F  S     
Sbjct: 185 KEMMR---TNVRPDEGTLVSVVSACAQ-SGSIELGRQVHSW-VDDDDDDHGFSSSLKIVN 239

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVG 198
           AL+  YS+    + A  +F+ +  +DVV +  +I G+   +   ++L +F +M RS +  
Sbjct: 240 ALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECP 299

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           + +  +S  L A A L A++  R IH +    + G+     + T LID Y K G +  A 
Sbjct: 300 NDVTLLS-VLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAH 358

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VF+  L    S +WNAM+ G+A  G  +   +LF  +      PD+ +F+ +L+A  ++
Sbjct: 359 QVFNSMLYRSLS-SWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHS 417

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL     +  + M   Y L P LEHY C+I  +G +G  ++AE +   MP EPD  +W +
Sbjct: 418 GLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCS 477

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL     HG  ++A    ++LI I P +  +YV+++N+ +  GRW++VA VR V+  + +
Sbjct: 478 LLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGM 537

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S IEV   VH F+ GD++H R  +IY  L E+  + E  G+ P   E+L  + +
Sbjct: 538 KKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEE 597

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K  AL +HSEKLA+AFGL+S  P G  L IVKNLR+CR+CHE+ K IS++ +REIV R
Sbjct: 598 EWKEGALRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLISKIYKREIVAR 656

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F +G C+C D W
Sbjct: 657 DRTRFHHFRDGVCSCCDYW 675



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 192/425 (45%), Gaps = 50/425 (11%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKT 108
           L Y++ +F  I  PN++ W  ++  H++S   ++     +R  +L  LPN  +   L K+
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI------- 161
           CA  S AF  G  +H+  LKL      +  ++L+  Y+R    ++A+KVFD         
Sbjct: 74  CAK-SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVS 132

Query: 162 ------------------------RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
                                    ERDVV + AMI G+ +N R  ++L +F +M  ++V
Sbjct: 133 CTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV 192

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHG----HAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
                 +   + A A+  ++E  R +H          G   ++ +   LID Y K G V 
Sbjct: 193 RPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVE 252

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A  +F E LS  + ++WN ++ GY         L LF  +   G  P++ + L+VL A 
Sbjct: 253 TAFGLF-EGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPAC 311

Query: 314 CNAGLAGESEKWIERMKVRYKL-----EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
            + G A +  +WI  + +  KL     E  L   T LI    + G +E A ++  +M + 
Sbjct: 312 AHLG-AIDIGRWI-HVYIDKKLKGVTNETSLR--TSLIDMYAKCGDIEAAHQVFNSMLYR 367

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAE 426
             ++ W A++   A+HG+A+ A  +  R+    + P DD  +V + +  S  G  D   +
Sbjct: 368 SLSS-WNAMIFGFAMHGRANAAFDLFSRMRGNRVEP-DDITFVGLLSACSHSGLLDLGRQ 425

Query: 427 VRKVM 431
           + K M
Sbjct: 426 IFKSM 430


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/558 (32%), Positives = 291/558 (52%), Gaps = 8/558 (1%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           AR +  + A+R    +N  I    +S  +  S++LF+  P  +  SW  +IS    S  +
Sbjct: 166 ARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHA 225

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
            +    + R      + N  T ++ F     L    L G  LH   L  +L    F  S+
Sbjct: 226 ADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDL-GRQLHGRVLIAALEGDAFVRSS 284

Query: 141 LVHFYSRFRSPDNAKKVFDEIR--ERDV-VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           L+  Y +    + A  VFD      RD+   +  M+ G+ QN R  ++L +F  M    V
Sbjct: 285 LMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGV 344

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +  + ++    A A +  +EQ R +HG         +  + + ++D Y K G + DAR 
Sbjct: 345 AADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARS 404

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD   +  N   W +M+  YA  G     +ELF  +      P+E + + VL+A  + G
Sbjct: 405 IFDRACTK-NIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVG 463

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  E E + ++M+  Y + P +EHY C++   GR+G L+ A+          +A VW+ L
Sbjct: 464 LVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTL 523

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           LS   +H   + A    ++L+ +   D  +YV+++N+ +   +W +  E+R  M++R+VR
Sbjct: 524 LSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVR 583

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           K+ GRSWI +K  VH F+AGD  H ++ +IY  L +L+E  + +GY    D ++H+V D 
Sbjct: 584 KQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDE 643

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
           ++  AL +HSEKLA+AFG++S  P G  LRI KNLR+C DCHE+ KYIS    REIVVRD
Sbjct: 644 QRETALKFHSEKLAIAFGIIS-TPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRD 702

Query: 558 VNRYHRFLNGSCTCGDLW 575
           + R+H F + SC+C D W
Sbjct: 703 LYRFHHFKDASCSCEDFW 720



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 165/382 (43%), Gaps = 47/382 (12%)

Query: 55  LFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           +F+  P+     WT  IS           +  F  ML     +  PN   LA++ + CA 
Sbjct: 67  VFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEAT--PNAFVLAAVVRCCAG 124

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
           +      G  +H   L+  +H      +A++  Y++    + A++VF  + ERD V +  
Sbjct: 125 MGDV-ESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR------AAAELAAMEQC----- 220
            I    Q+  ++ S+ +F +    D  S    +SG +R      A + L  M Q      
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFN 243

Query: 221 --------------------RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
                               R +HG  +++ L+ +  V + L+D Y K G++  A  VFD
Sbjct: 244 HYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFD 303

Query: 261 E--NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
               L+   + AW+ M+AGY Q G +   L+LF  +   G A D ++  +V  A  N G+
Sbjct: 304 HWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGM 363

Query: 319 AGESEK---WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             +  +    +E  K+ YKL+  L   + ++    + G LEDA  I        + AVW 
Sbjct: 364 VEQGRQVHGCVE--KLWYKLDAPLA--SAIVDMYAKCGNLEDARSI-FDRACTKNIAVWT 418

Query: 376 ALLSFSAIHGKADMASKMGKRL 397
           ++L   A HG+  +A ++ +R+
Sbjct: 419 SMLCSYASHGQGRIAIELFERM 440



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 103/215 (47%), Gaps = 6/215 (2%)

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
            L G +    SL+  L   P   ++++ F+ R R   +A+ VFDE   R    +   I G
Sbjct: 26  LLRGRAARGGSLEARLATVPHERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISG 85

Query: 176 FAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
            A+  R  D +  FA+M +  +     + ++  +R  A +  +E  + +HG  + +G+  
Sbjct: 86  CARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHL 145

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           +V++   ++D Y K G    ARRVF   ++  ++++WN  +    Q GD    ++LF   
Sbjct: 146 DVVLCNAVLDMYAKCGQFERARRVFGA-MAERDAVSWNIAIGACIQSGDILGSMQLFDES 204

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            +R    D  S+  +++ L  +G A ++   + RM
Sbjct: 205 PLR----DTTSWNTIISGLMRSGHAADALSHLRRM 235


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 199/627 (31%), Positives = 320/627 (51%), Gaps = 64/627 (10%)

Query: 7   QQPQPQN-------TSTDPRIV---HARALKSSQADRS-IYNNLITNYS--KSNLLSYSL 53
           QQ  P N       T + P+ V   HA +LK++  +   + + L+  YS  K N L Y+ 
Sbjct: 11  QQYLPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYAR 70

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPLSLN--IFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
            +F+ I   +++ W  +I  +  +  S +  +    L H    +LP+  TL  + K CA 
Sbjct: 71  SIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH---EYLPDNFTLPCVIKGCAR 127

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
           L      G  +H L+LK+      F   +LV+ YS+    D A+KVFD + ++DVV + +
Sbjct: 128 LG-VVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNS 186

Query: 172 ------------------------------------------MIVGFAQNSRLVDSLSVF 189
                                                     MI G+  N + +D++ +F
Sbjct: 187 LIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMF 246

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
             M       +   +   L A + LA + + R IH +   +G + + I+GT LI+ Y K 
Sbjct: 247 FMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKC 306

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  A  VF   +       W A++ G    G  +  L LF  +   G  P+   F+ V
Sbjct: 307 GCIESALTVF-RAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGV 365

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  +AGL  +  ++ + M   YK+EP LEHY CL+  + RAG LE+A+     MP  P
Sbjct: 366 LNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISP 425

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           +  +W +LL  S  HGK D+     +R+I++ P     Y++++N+ +  G W++V+ VR+
Sbjct: 426 NKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVRE 485

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
           +M  R  RK+ G S +E KG +H F+ GD  H +T++IY K++E+ E+ + +G+VP   +
Sbjct: 486 MMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQ 545

Query: 490 MLHNV-GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
           +L  + G++EK   L  HSE+LA+AFGL++  P G  +RI+KNLR+C DCH   K +S++
Sbjct: 546 VLLCIEGEKEKEAELENHSERLAIAFGLINVKP-GIPIRIMKNLRVCNDCHSVTKLLSKI 604

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
             REI+VRD  R+H F NGSC+C D W
Sbjct: 605 YSREIIVRDNCRFHHFKNGSCSCMDYW 631


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 187/565 (33%), Positives = 315/565 (55%), Gaps = 16/565 (2%)

Query: 20  IVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           ++H  A+K    D+ ++  N LI  Y K  +L  +  +F+ +   ++V+W ++IS     
Sbjct: 190 VMHVYAVKHG-LDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQR 248

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-D 133
             +  +L +F  M R   +S  P+  TL SL    A          SLH   ++     D
Sbjct: 249 GQTAAALKMFQGM-RGSGVS--PDVLTLVSLASAIAQGGDG-RSAKSLHCYVMRRGWDVD 304

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               G+A+V  Y++  + + A+++FD +  +D V +  +I G+ QN    +++  +  M+
Sbjct: 305 DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQ 364

Query: 194 SSD-VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             + + +        L A + L A++Q   +H  ++  GL+ +V VGT LID Y K G +
Sbjct: 365 KHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKL 424

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           ++A  +F E +   ++  WNA+++G    G  +  L LF  ++  G  PD  +F+++L A
Sbjct: 425 AEAMLLF-EKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAA 483

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  +   + + M+V Y + P  +HY C+   +GRAG+L++A      MP +PD+A
Sbjct: 484 CSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSA 543

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VW ALL    IHG  +M     + L +++P +   YV+++N+ + VG+WD V EVR +++
Sbjct: 544 VWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVR 603

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRM--HERTEDIYTKLAELMEECERLGYVPVWDEM 490
            + ++K  G S IEVK  V+VF +G++   H + E+I  +L  L+ +   +GYV  +  +
Sbjct: 604 RQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFV 663

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           L +V D EK   L  HSE+LA+AFG+++  P    L I KNLR+C DCH + KYIS++ E
Sbjct: 664 LQDVEDDEKEHILNNHSERLAIAFGIIN-TPSRTPLHIYKNLRVCGDCHNATKYISQITE 722

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           REI+VRD NR+H F +G C+CGD W
Sbjct: 723 REIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 158/328 (48%), Gaps = 13/328 (3%)

Query: 68  TALISAHSNSPLSLNIFLSMLRH---PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
             LI+A S + L   +   +LRH       F P+  T  SL +   S + A      LH+
Sbjct: 37  NTLIAAFSRAALP-RLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASA----AQLHA 91

Query: 125 LSLKLSL-HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
            +L+L L     F   +LVH Y RF     A KVFDE+ ERDV  + AM+ G  +N+R  
Sbjct: 92  CALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAA 151

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           +++ +F  M    V      VS  L     L       V+H +AV  GLD+ + V   LI
Sbjct: 152 EAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALI 211

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           D YGK G++ +A+ VF   +   + + WN++++G  Q+G  +  L++F  +   G +PD 
Sbjct: 212 DVYGKLGMLEEAQCVF-HGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDV 270

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLE-PGLEHYTCLISAMGRAGRLEDAERIA 362
            + +++ +A+   G  G S K +    +R   +   +     ++    +   +E A+R+ 
Sbjct: 271 LTLVSLASAIAQGG-DGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMF 329

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMA 390
            +MP + D+  W  L++    +G A+ A
Sbjct: 330 DSMPVQ-DSVSWNTLITGYMQNGLANEA 356


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 183/519 (35%), Positives = 290/519 (55%), Gaps = 7/519 (1%)

Query: 60  PSPNIVSWTALI--SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
           P+P+   + +L   +A    P +   F   L    L F  +     S+ K CA LS A  
Sbjct: 66  PAPDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPF--SSFAFTSVAKACADLS-AIR 122

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G+ +H+ ++ L L    F  ++LV  YS+    D A+K+FD IR++ VV + AMI G+ 
Sbjct: 123 AGMGIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYE 182

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN     ++ V+ +M+ +            L A A+  A++  R +    V   ++ NV+
Sbjct: 183 QNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVV 242

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           +G  L++ Y + G+V+ AR  F+  L   N + W +M+AGY   G     ++LF+L+  +
Sbjct: 243 LGAALVNMYARCGLVNKAREWFN-MLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQ 301

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  P++ +F+AVL+A  +AGL  E       MK  Y L P +EHY  ++   GRAG L+D
Sbjct: 302 GPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDD 361

Query: 358 AER-IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           A R I  ++P EP   VW A+L    +H   ++  ++ +RLI + P   S  V+++N+ +
Sbjct: 362 AMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEPESPSHRVLLSNLYA 421

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
             G+ + V +VR  M  RR++K  G S IE+ G  H+F  G++ H +T +IY  L +L+E
Sbjct: 422 LSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLEKLIE 481

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
           +   +GYVP  D +LH + + E+  AL YH EKLA+AFGL+  +     +RI+KNLRIC 
Sbjct: 482 KITDVGYVPKTDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTTPIRIIKNLRICE 541

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH + KY+S V  REI+VRD++R+H F  G C+C + W
Sbjct: 542 DCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 580


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 198/591 (33%), Positives = 309/591 (52%), Gaps = 53/591 (8%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +HA+ ++S  Q D  + + LI  Y+K      + R+FN +   N VSWT LI     +  
Sbjct: 282 LHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC 341

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S+ +F + +R   ++   +Q  LA+L   C +       G  LHSL LK   +    
Sbjct: 342 FSKSVELF-NQMRAELMAI--DQFALATLISGCFN-RMDLCLGRQLHSLCLKSGHNRAIV 397

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV------------- 183
             ++L+  Y++     NA+ VF  + ERD+V + +MI  ++Q   ++             
Sbjct: 398 VSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRN 457

Query: 184 ------------------DSLSVFADMRSS-DVGSTMYCVSGALRAAAELAAMEQCRVIH 224
                             D L +++ M S  DV           R  A++ A +    I 
Sbjct: 458 AITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQII 517

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           GH V +GL  NV V    I  Y K G +S+A+++FD  L+  + ++WNAM+ GY+Q G  
Sbjct: 518 GHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDL-LNGKDVVSWNAMITGYSQHGMG 576

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
               + F  +  +G  PD  S++AVL+   ++GL  E + + + M   + + PGLEH++C
Sbjct: 577 KQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSC 636

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  +GRAG L +A+ +   MP +P A VW ALLS   IHG  ++A    K + +++  D
Sbjct: 637 MVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPD 696

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
             +Y+++A + S  G+ D+ A+VRK+M+D+ ++K  G SW+EV+ KVHVF A D  H + 
Sbjct: 697 SGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQV 756

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
             I  K+ ELME+   LGYV             E   +  +HSEKLA+AFG++S  P   
Sbjct: 757 IAIRNKMDELMEKIAHLGYVRT-----------ESPRSEIHHSEKLAVAFGIMS-LPAWM 804

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + I+KNLRIC DCH   K IS V +RE V+RD  R+H F +GSC+CGD W
Sbjct: 805 PIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 167/361 (46%), Gaps = 32/361 (8%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRHPT 92
           +N ++  Y+K   LS +  LF+ +P  ++ SW  L+S  S    S +S          P 
Sbjct: 90  HNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQ 149

Query: 93  LSFL---------PNQRT-LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--FCGSA 140
           L  L         P+  T L  +F  C  +  A          S   S  ++P  FC ++
Sbjct: 150 LLGLFWKFDFWGDPDVETALVDMFVRCGYVDFA----------SRLFSQIERPTIFCRNS 199

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV--G 198
           ++  Y++    D+A + F+++ ERDVV +  MI   +Q+ R+ ++L +  +M    V   
Sbjct: 200 MLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLD 259

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           ST Y  + +L A A L ++   + +H   + S    +  V + LI+ Y K G   +A+RV
Sbjct: 260 STTY--TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRV 317

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F+ +L   NS++W  ++ G  Q    S  +ELF+ +     A D+++ LA L + C   +
Sbjct: 318 FN-SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA-LATLISGCFNRM 375

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
                + +  + ++      +     LIS   + G L++AE +  +M  E D   W +++
Sbjct: 376 DLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS-ERDIVSWTSMI 434

Query: 379 S 379
           +
Sbjct: 435 T 435



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/532 (19%), Positives = 200/532 (37%), Gaps = 93/532 (17%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI-------------------------- 64
            D  +   L+  + +   + ++ RLF+ I  P I                          
Sbjct: 161 GDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDM 220

Query: 65  -----VSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
                VSW  +I+A S S     +L + + M R        +  T  S    CA L  + 
Sbjct: 221 AERDVVSWNMMIAALSQSGRVREALGLVVEMHRK---GVRLDSTTYTSSLTACARL-FSL 276

Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
            +G  LH+  ++      P+  SAL+  Y++  S   AK+VF+ +++R+ V +  +I G 
Sbjct: 277 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 336

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
            Q      S+ +F  MR+  +    + ++  +        +   R +H   + SG +R +
Sbjct: 337 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAI 396

Query: 237 IVGTGLIDGYGKAGIVSDARRVFD------------------------------ENLSVL 266
           +V   LI  Y K G + +A  VF                               + ++  
Sbjct: 397 VVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR 456

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
           N+I WNAM+  Y Q G +   L+++  +L  +   PD  +++ +     + G     ++ 
Sbjct: 457 NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQI 516

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           I    V+  L   +      I+   + GR+ +A+++   +    D   W A+++  + HG
Sbjct: 517 IGH-TVKAGLILNVSVANAAITMYSKCGRISEAQKL-FDLLNGKDVVSWNAMITGYSQHG 574

Query: 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445
               A+K    ++      D  Y+    VLSG      V E              G+ + 
Sbjct: 575 MGKQAAKTFDDMLSKGAKPD--YISYVAVLSGCSHSGLVQE--------------GKLYF 618

Query: 446 EVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP------VWDEML 491
           ++  +VH    G        D+  +   L E  + +  +P      VW  +L
Sbjct: 619 DMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALL 670



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 48/97 (49%)

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           ++ ALR+     A+   R +HG  V  GL   V +   L+  Y   G +SDARR+   ++
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 82

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
              N I  N MM GYA+QG  S   ELF  +  R  A
Sbjct: 83  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVA 119



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/355 (20%), Positives = 142/355 (40%), Gaps = 52/355 (14%)

Query: 95  FLPNQRT--LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
            LP+  T  LA   ++C S   A     +LH   + + L    F  + L+H Y    +  
Sbjct: 14  LLPHAVTQALADALRSCGSRG-ALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALS 72

Query: 153 NAKKVF-DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           +A+++   +I+E +V+ +  M+ G+A+   L D+  +F  M   DV S    +S   R A
Sbjct: 73  DARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPA 132

Query: 212 AE------LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD----- 260
                   L   E    + G         +  V T L+D + + G V  A R+F      
Sbjct: 133 GSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERP 192

Query: 261 -------------------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
                                    E+++  + ++WN M+A  +Q G     L L   + 
Sbjct: 193 TIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMH 252

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY-KLEPGLEHY--TCLISAMGRA 352
            +G   D  ++ + LTA       G    W +++  +  +  P ++ Y  + LI    + 
Sbjct: 253 RKGVRLDSTTYTSSLTACARLFSLG----WGKQLHAKVIRSLPQIDPYVASALIELYAKC 308

Query: 353 GRLEDAERIAMAMPFEPDAAVWRAL----LSFSAIHGKADMASKMGKRLIDINPY 403
           G  ++A+R+  ++  + ++  W  L    L +       ++ ++M   L+ I+ +
Sbjct: 309 GSFKEAKRVFNSLQ-DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQF 362


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 198/591 (33%), Positives = 309/591 (52%), Gaps = 53/591 (8%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +HA+ ++S  Q D  + + LI  Y+K      + R+FN +   N VSWT LI     +  
Sbjct: 292 LHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYEC 351

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S+ +F + +R   ++   +Q  LA+L   C +       G  LHSL LK   +    
Sbjct: 352 FSKSVELF-NQMRAELMAI--DQFALATLISGCFN-RMDLCLGRQLHSLCLKSGHNRAIV 407

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV------------- 183
             ++L+  Y++     NA+ VF  + ERD+V + +MI  ++Q   ++             
Sbjct: 408 VSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRN 467

Query: 184 ------------------DSLSVFADMRSS-DVGSTMYCVSGALRAAAELAAMEQCRVIH 224
                             D L +++ M S  DV           R  A++ A +    I 
Sbjct: 468 AITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQII 527

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           GH V +GL  NV V    I  Y K G +S+A+++FD  L+  + ++WNAM+ GY+Q G  
Sbjct: 528 GHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDL-LNGKDVVSWNAMITGYSQHGMG 586

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
               + F  +  +G  PD  S++AVL+   ++GL  E + + + M   + + PGLEH++C
Sbjct: 587 KQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSC 646

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  +GRAG L +A+ +   MP +P A VW ALLS   IHG  ++A    K + +++  D
Sbjct: 647 MVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPD 706

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
             +Y+++A + S  G+ D+ A+VRK+M+D+ ++K  G SW+EV+ KVHVF A D  H + 
Sbjct: 707 SGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQV 766

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
             I  K+ ELME+   LGYV             E   +  +HSEKLA+AFG++S  P   
Sbjct: 767 IAIRNKMDELMEKIAHLGYVRT-----------ESPRSEIHHSEKLAVAFGIMS-LPAWM 814

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + I+KNLRIC DCH   K IS V +RE V+RD  R+H F +GSC+CGD W
Sbjct: 815 PIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/495 (20%), Positives = 199/495 (40%), Gaps = 62/495 (12%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           N+++  Y+K   + +++  F  +   ++VSW  +I+A S S     +L + + M R    
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK--- 264

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
               +  T  S    CA L  +  +G  LH+  ++      P+  SAL+  Y++  S   
Sbjct: 265 GVRLDSTTYTSSLTACARL-FSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKE 323

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           AK+VF+ +++R+ V +  +I G  Q      S+ +F  MR+  +    + ++  +     
Sbjct: 324 AKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN 383

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD------------- 260
              +   R +H   + SG +R ++V   LI  Y K G + +A  VF              
Sbjct: 384 RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSM 443

Query: 261 -----------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPD 302
                            + ++  N+I WNAM+  Y Q G +   L+++  +L  +   PD
Sbjct: 444 ITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
             +++ +     + G     ++ I    V+  L   +      I+   + GR+ +A+++ 
Sbjct: 504 WVTYVTLFRGCADIGANKLGDQIIGH-TVKAGLILNVSVANAAITMYSKCGRISEAQKL- 561

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             +    D   W A+++  + HG    A+K    ++      D  Y+    VLSG     
Sbjct: 562 FDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPD--YISYVAVLSGCSHSG 619

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
            V E              G+ + ++  +VH    G        D+  +   L E  + + 
Sbjct: 620 LVQE--------------GKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLID 665

Query: 483 YVP------VWDEML 491
            +P      VW  +L
Sbjct: 666 KMPMKPTAEVWGALL 680



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 176/379 (46%), Gaps = 42/379 (11%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N ++  Y+K   LS +  LF+ +P  ++ SW  L+S +  +      L  F+SM  H +
Sbjct: 74  HNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSM--HRS 131

Query: 93  LSFLPNQRTLASLFKTCASLS----HAFLFGL--------------SLHSLSLKLSLHD- 133
              LPN  T   + K+C +L        L GL              +L  + ++    D 
Sbjct: 132 GDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDF 191

Query: 134 ---------KP--FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
                    +P  FC ++++  Y++    D+A + F+++ ERDVV +  MI   +Q+ R+
Sbjct: 192 ASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRV 251

Query: 183 VDSLSVFADMRSSDV--GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
            ++L +  +M    V   ST Y  + +L A A L ++   + +H   + S    +  V +
Sbjct: 252 REALGLVVEMHRKGVRLDSTTY--TSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVAS 309

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            LI+ Y K G   +A+RVF+ +L   NS++W  ++ G  Q    S  +ELF+ +     A
Sbjct: 310 ALIELYAKCGSFKEAKRVFN-SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
            D+++ LA L + C   +     + +  + ++      +     LIS   + G L++AE 
Sbjct: 369 IDQFA-LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 361 IAMAMPFEPDAAVWRALLS 379
           +  +M  E D   W ++++
Sbjct: 428 VFSSMS-ERDIVSWTSMIT 445



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 48/97 (49%)

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           ++ ALR+     A+   R +HG  V  GL   V +   L+  Y   G +SDARR+   ++
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
              N I  N MM GYA+QG  S   ELF  +  R  A
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVA 103



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/301 (19%), Positives = 123/301 (40%), Gaps = 43/301 (14%)

Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGS 199
           +++ Y++  S  +A+++FD +  RDV  +  ++ G+ Q  R +D L  F  M RS D   
Sbjct: 77  MMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLP 136

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             +     +++   L   E    + G         +  V T L+D + + G V  A R+F
Sbjct: 137 NAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLF 196

Query: 260 D------------------------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
                                          E+++  + ++WN M+A  +Q G     L 
Sbjct: 197 SQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALG 256

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY-KLEPGLEHY--TCLI 346
           L   +  +G   D  ++ + LTA       G    W +++  +  +  P ++ Y  + LI
Sbjct: 257 LVVEMHRKGVRLDSTTYTSSLTACARLFSLG----WGKQLHAKVIRSLPQIDPYVASALI 312

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRAL----LSFSAIHGKADMASKMGKRLIDINP 402
               + G  ++A+R+  ++  + ++  W  L    L +       ++ ++M   L+ I+ 
Sbjct: 313 ELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQ 371

Query: 403 Y 403
           +
Sbjct: 372 F 372


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 192/581 (33%), Positives = 303/581 (52%), Gaps = 60/581 (10%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPL--SLNIFLSMLRHPTLSF 95
            IT      + +Y   LF+ + SPN   ++ALI A++ N P   S+ ++ SML +   + 
Sbjct: 52  FITTLPHIPVHTYPHLLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNN---NV 108

Query: 96  LPNQRTLASLFKTCASLS-------HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
            P   T ++LF    + S       HAFLFG             +  + G+ ++H Y +F
Sbjct: 109 SPVSFTFSALFSLLKNPSLGSQLHLHAFLFGFV-----------NDLYVGNTIIHMYVKF 157

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIV-------------------------------GFA 177
              D A+KVFDE+  RDVV +  +IV                               G++
Sbjct: 158 GVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYS 217

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS--GLDRN 235
           QN+    +L  F  MR + V +    + GA+ A A+L        I   A  S  G   N
Sbjct: 218 QNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSN 277

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           V VG+ LID Y K G V +A  VF + +  +N  ++++M+ G+A  G   + ++LF+ + 
Sbjct: 278 VFVGSALIDMYSKCGNVEEAYNVF-KGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEML 336

Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
             G  P+  +F+ + TA  +AG+  + ++    MK  Y + P  +HY C+   +GRAG L
Sbjct: 337 ENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHL 396

Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
           E A ++   MP EP+  VW ALL  S IHG  D+A    + L ++ P +   Y++++   
Sbjct: 397 EKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTY 456

Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK-GKVHVFLAGDRMHERTEDIYTKLAEL 474
           +   +WD+V+ VRK+M+++++RK  G SW+E K G +H F AGD  H    +I   L +L
Sbjct: 457 ALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKHPEINEIKKALDDL 516

Query: 475 MEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRI 534
           ++  +  GY P  + + +++ D  KR  L  HSEKLALA+GL+S    G T++I+KNLRI
Sbjct: 517 LQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLS-TDAGSTIKIMKNLRI 575

Query: 535 CRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           C DCH      S++  R+I+VRD  R+H FLNG+C+C + W
Sbjct: 576 CEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 193/582 (33%), Positives = 325/582 (55%), Gaps = 23/582 (3%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSP 62
           LN    P+    + RI+H   ++  + DR +   N LI  Y K   L  ++ +F  +   
Sbjct: 310 LNACSGPRGLE-EGRIIHG-FMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHR 367

Query: 63  NIVSWTALISAH---SNSPLSLNIF----LSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115
           +++SW  +I+AH   S  P +L++     L  ++   +SF+       +    CA+ S A
Sbjct: 368 DVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFV-------NALPLCAT-SEA 419

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
              G  +HS  ++  +       +A++  Y   +S D+A +VF  ++ RD V + AMI  
Sbjct: 420 LAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVSWNAMITA 479

Query: 176 FAQNSRLV-DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           +A   RL  ++L +F  M+       +     AL A A  A++ + +++H     +GL+ 
Sbjct: 480 YAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLES 539

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           N+ V   +++ Y K+G +  AR++F + + + + I+WN M++ +AQ G    VL  F  +
Sbjct: 540 NMTVANAVLNMYAKSGTLVLARKMFGK-MPLPDVISWNGMISAFAQHGHADQVLRFFRRM 598

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
              G  P++ +F++V++A  + GL  +  + ++  +     + P  EHY C++  + RAG
Sbjct: 599 NHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAG 658

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           +L+ AE+   A P +PD  +   +L  S +H   + A K  + L+++ P   +AYV+++N
Sbjct: 659 KLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSN 718

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           +   VG+ DE A++R++M ++ +RKE   S I VK +VH F  GD  + RT +I  +L  
Sbjct: 719 LYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEELER 778

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L  E  + GY P    MLH+VGD +K+  L YHSEKLA+AFGL+S AP G +LRI+KNLR
Sbjct: 779 LSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAP-GTSLRIIKNLR 837

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +C DCH + K+IS++  REIVVRD +R+H F NG+C+CGD W
Sbjct: 838 VCGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 162/379 (42%), Gaps = 27/379 (7%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS--- 75
           VHAR  KS+  DR  +  + L+  Y     L  +   F+ +P  + ++W  LI AH    
Sbjct: 20  VHARICKSAM-DRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLIRAHGQIG 78

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           +S  +L++F SM         P  R   ++   C++       G  +H +    ++    
Sbjct: 79  DSEQALHLFRSM---QLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDH 135

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           +  + L+H Y +  S ++A+KVFD IR + VV + AMI  +AQ      ++ VF  M   
Sbjct: 136 YVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLE 195

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVI--------HGHAVVSGLDRNVIVGTGLIDGYG 247
            V +      G L A ++L  +E  +++        H H   S         T L++ YG
Sbjct: 196 GVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSF------ATALVNFYG 249

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
             G +  A R F  +   L  I   AM+  Y Q+      LELF ++ + G   D  + +
Sbjct: 250 SCGDLEQAFRAFSRHR--LELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACM 307

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           AVL A C+     E  + I       + +  +     LI+  G+ G LE+A  +  +M  
Sbjct: 308 AVLNA-CSGPRGLEEGRIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQH 366

Query: 368 EPDAAVWRALLSFSAIHGK 386
             D   W  +++    H +
Sbjct: 367 R-DVISWNTIIAAHGQHSQ 384



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 115/254 (45%), Gaps = 11/254 (4%)

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
           S +   G  +H+   K ++   PF G  LV  Y    S  +AK  FD +  +D + +  +
Sbjct: 11  SRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARL 70

Query: 173 IVGFAQNSRLVDSLSVFADMR---SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
           I    Q      +L +F  M+    + V      V GA  A  EL  +E+ R IHG    
Sbjct: 71  IRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPEL--LEEGRRIHGVLRG 128

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
           + ++ +  V T L+  YGK   V DAR+VFD  +     + WNAM+  YAQQ      ++
Sbjct: 129 TAMESDHYVSTTLLHMYGKCSSVEDARKVFD-GIRHKRVVEWNAMITAYAQQDHHEQAIQ 187

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH---YTCLI 346
           +F+ + + G   +  +F+ VL A C+     E  K + ++ V  +    L      T L+
Sbjct: 188 VFYAMLLEGVKAERITFIGVLDA-CSKLKDLEVAKLV-KLCVEEREHDHLHDSSFATALV 245

Query: 347 SAMGRAGRLEDAER 360
           +  G  G LE A R
Sbjct: 246 NFYGSCGDLEQAFR 259



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 27/180 (15%)

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           D L V AD RS D+G                      + +H     S +DR   +G  L+
Sbjct: 3   DLLDVVADSRSLDLG----------------------KEVHARICKSAMDRGPFMGDLLV 40

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
             Y   G + DA+  FD  + V +++ W  ++  + Q GD    L LF  +++ G AP  
Sbjct: 41  RMYVDCGSLIDAKACFD-RMPVQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVN 99

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERI 361
            +F+AVL A        E  + I  +     +E   +HY  T L+   G+   +EDA ++
Sbjct: 100 RNFVAVLGACSADPELLEEGRRIHGVLRGTAMES--DHYVSTTLLHMYGKCSSVEDARKV 157


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 191/567 (33%), Positives = 313/567 (55%), Gaps = 37/567 (6%)

Query: 19  RIVHARALKSSQADRSIYNNLITNY---SKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           R +H + LK+      I  + +  +     S  L+Y+  +F+ I  PN   W  +I  +S
Sbjct: 35  RQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYS 94

Query: 76  NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           NS     +L ++  ML H   S   N  T   L K C+S+S A      +H+  +K+   
Sbjct: 95  NSKEPEEALLLYHHMLYH---SVPHNAYTFPFLLKACSSMS-ALEETQQIHAHIIKMGFG 150

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            + +  ++L++ YS+     +A+ +FD++ +RD                  ++L++F  M
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-----------------EALNLFHRM 193

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           +++ +      +   L+A A+L  ++Q + IH +     ++ + I+G  LID Y K G +
Sbjct: 194 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 253

Query: 253 SDARRVF----DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            +A  VF    ++ +SV     W AM++GYA  G     LE F  ++  G  P++ +F  
Sbjct: 254 EEAIEVFRKMEEKGVSV-----WTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTG 308

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           +LTA  +AGL  E++   E M+  +  +P +EHY C++  +GRAG L++AE +   MP +
Sbjct: 309 ILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVK 368

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
           P+AA+W ALL+   IHG  ++  ++GK LI ++P     Y+ +A++ +  G W++ A VR
Sbjct: 369 PNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVR 428

Query: 429 KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
           + MK++ V K  G S I V G  H FLAGD  H + ++I   L +++E     GY P   
Sbjct: 429 RQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLG 488

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
           ++L ++ D+EK  A+ +HSEKLA+ FGL+S  P G T+RIVKNLR+C DCH   K IS+V
Sbjct: 489 DLLLDLEDKEKETAIHHHSEKLAVTFGLISTKP-GMTIRIVKNLRVCEDCHTVIKLISKV 547

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
             REI++RD  R+H F +G+CTCGD W
Sbjct: 548 YAREILMRDRTRFHLFKDGNCTCGDYW 574



 Score = 46.2 bits (108), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 8/146 (5%)

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLID--GYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
           ME+ R IHG  + +GL  + I  + L+       +G ++ AR VFD      N+  WN M
Sbjct: 31  MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP-NTFMWNTM 89

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + GY+   +    L L+H +       + Y+F  +L A C++  A E  + I    +  K
Sbjct: 90  IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKA-CSSMSALEETQQIHAHII--K 146

Query: 335 LEPGLEHYTC--LISAMGRAGRLEDA 358
           +  G E YT   L++   ++G ++ A
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSA 172


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 186/582 (31%), Positives = 310/582 (53%), Gaps = 30/582 (5%)

Query: 19  RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN--IVSWTALISAH 74
           R +HA  LK +   A+  + + L+  Y+ +  ++ + R+F+ +P P+  +  W A+I  +
Sbjct: 302 REMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGY 361

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + + +   +L +F  M         P++ T++ +   CA  S  F    ++H   +K  +
Sbjct: 362 AQAGMDEEALELFSRM--EAEAGCAPSETTMSGVLPACAR-SEGFAGKEAMHGYVVKRGM 418

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F  +AL+  Y+R    D A+++F  I  RDVV +  +I G        ++  +  +
Sbjct: 419 AGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTE 478

Query: 192 MR----------SSDVGSTMYCVSG------ALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
           M+          +++ G    C+         L   A LAA  + + IHG+AV   L+ +
Sbjct: 479 MQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESD 538

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           + VG+ L+D Y K G ++ +R VFD  L   N I WN ++  Y   G     + LF  + 
Sbjct: 539 IAVGSALVDMYAKCGCLAASRAVFD-RLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMA 597

Query: 296 MRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
             G A P+E +F+A L A  ++GL     +    M+  + ++P  + + C++  +GRAGR
Sbjct: 598 AGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGR 657

Query: 355 LEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           L++A  I  +M P E   + W +LL    +H   ++     +RL ++ P + S YV++ N
Sbjct: 658 LDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCN 717

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + S  G WD+   VR  M+ + V KE G SWIE+ G +H F+AG+  H  + +++  +  
Sbjct: 718 IYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDA 777

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L E   R GY P    +LH+V + EK   L YHSEKLA+AFGL+  AP G  +R+ KNLR
Sbjct: 778 LWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLR-APPGAAIRVAKNLR 836

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +C DCHE+ K++S++V R+IV+RDV R+H F +GSC+CGD W
Sbjct: 837 VCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 20/210 (9%)

Query: 121 SLHSLSLKLSL--HDKPFCGSALVHFYSR--FRSPDNAKKVFDEIRERDVVCYGAMIVG- 175
           SLH+ +L+ +L     P  G+AL+  Y+R        A         RD V Y ++I   
Sbjct: 84  SLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISAL 143

Query: 176 --FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV---IHGHAVVS 230
             F Q  R +D+L         DV S  + +   L A + L   +  R+    H  A+  
Sbjct: 144 CLFRQWERALDALRDMLAEGRHDVSS--FTLVSVLLACSHLPGDDGRRLGREAHAFALKR 201

Query: 231 GL---DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS-----IAWNAMMAGYAQQG 282
           G     R       L+  Y + G+V DA+ +F    +  +      + WN M++   Q G
Sbjct: 202 GFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGG 261

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             +  +E+ + +   G  PD  +F + L A
Sbjct: 262 RCAEAVEVLYDMVSLGVRPDGVTFASALPA 291


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 181/554 (32%), Positives = 298/554 (53%), Gaps = 11/554 (1%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNI 83
           +SS  D   Y  LIT Y+ S  +  +  +F+ IP  ++VSW A+IS ++ +     +L +
Sbjct: 126 RSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALEL 185

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M++    +  P++ T+ ++   CA  S +   G  +HS              +AL+ 
Sbjct: 186 FKEMMK---TNVRPDEGTMVTVLSACAQ-SRSVELGRQVHSWIDDHGFGSNLKIVNALID 241

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            YS+    + A  +F+ +  +DVV +  +I G+   +   ++L +F +M  S        
Sbjct: 242 LYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 301

Query: 204 VSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           +   L A A L A++  R IH +    +  +     + T LID Y K G +  A +VF+ 
Sbjct: 302 IVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNS 361

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            L    S +WNAM+ G+A  G  +   +LF  +   G  PD+ +F+ +L+A  ++G    
Sbjct: 362 MLHKSLS-SWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDL 420

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
                + M   Y + P LEHY C+I  +G +G  ++A+ +   MP EPD  +W +LL   
Sbjct: 421 GRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKAC 480

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
             HG  ++A    + L+ + P +  +YV+++N+ +  G WDEVA+VR ++  + ++K  G
Sbjct: 481 RRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPG 540

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
            S IE+  +VH F+ GD++H R  +IY  L E+    E  G+VP   E+L  + +  K  
Sbjct: 541 CSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEG 600

Query: 502 ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
           AL +HSEKLA+AFGL+S  P G  L IVKNLR+CR+CHE+ K +S++ +REI+ RD  R+
Sbjct: 601 ALRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRF 659

Query: 562 HRFLNGSCTCGDLW 575
           H F +G C+C D W
Sbjct: 660 HHFRDGVCSCNDFW 673



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 192/426 (45%), Gaps = 56/426 (13%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAH--SNSPLS-LNIFLSMLRHPTLSFLPNQRTLASL 105
             Y++ +F  I  PN + W  ++  +  S+ P+S L +++ M+   +L  LPN  T   L
Sbjct: 16  FPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMI---SLGLLPNSYTFPFL 72

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K+CA  S AF  G  +H   LKL      +  ++L+  Y++    ++A KVFD    RD
Sbjct: 73  LKSCAK-SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD 131

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG------------------- 206
           VV Y A+I G+A +  +  +  +F ++   DV S    +SG                   
Sbjct: 132 VVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMK 191

Query: 207 ------------ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                        L A A+  ++E  R +H      G   N+ +   LID Y K G V  
Sbjct: 192 TNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVET 251

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F E LS  + ++WN ++ GY         L LF  +   G +P++ + +++L A  
Sbjct: 252 ACGLF-EGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACA 310

Query: 315 NAGLAGESEKWIERMKVRYKLE-----PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           + G A +  +WI  + +  KL+     P L   T LI    + G +E A ++  +M    
Sbjct: 311 HLG-AIDIGRWI-HVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNSM-LHK 365

Query: 370 DAAVWRALLSFSAIHGKA----DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
             + W A++   A+HG+A    D+ S+M K    I P DD  +V + +  S  G+ D   
Sbjct: 366 SLSSWNAMIFGFAMHGRANAGFDLFSRMRKN--GIEP-DDITFVGLLSACSHSGKLDLGR 422

Query: 426 EVRKVM 431
            + K M
Sbjct: 423 HIFKSM 428


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 318/580 (54%), Gaps = 15/580 (2%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN 63
           L Q+ Q  N  T     H   LKS    D    N+LI +Y +    + + +LF  +  PN
Sbjct: 33  LIQRLQDCNDITSVSFSHTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPN 92

Query: 64  IVSWTALISA--HSNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGL 120
           ++S+T+L++       P S L IF  ML    L   PN  T A++   C+ L+     G 
Sbjct: 93  VISFTSLMAGFIKVGRPKSALLIFCKMLESWVL---PNAFTFATVVNACSMLAD-LRTGQ 148

Query: 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            +HS      +       S+L+  Y +  + D+A++VFD +  R+VV + +MI  + QN+
Sbjct: 149 KIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYRNVVSWTSMITAYGQNA 208

Query: 181 RLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
               +L +F +     + S   + ++  + A A L  +   +V H   +  G + N +V 
Sbjct: 209 LGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHESNDVVA 268

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           + L+D Y K G +  + +VF   +   + I + +M+ G A+ G     L++F  +  R  
Sbjct: 269 SALVDMYAKCGCIGYSDKVF-RRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRI 327

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
            P++ +F+ VL A  ++GL  +  +++  M  ++ + P  +HYTC++  +GR GRL++A 
Sbjct: 328 KPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAH 387

Query: 360 RIAMAMPFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           ++A ++  EPD  A +W  LLS S ++G+ D+A +  K LI+ N    +AYV ++N  + 
Sbjct: 388 QLAKSIQVEPDQGALLWGTLLSASRLYGRVDIAVEASKWLIESNQQVAAAYVTMSNTYAM 447

Query: 418 VGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD-RMHERTEDIYTKLAELME 476
            G+W+ V  +R  MK   V KE G SW+E++   +VF AGD  +  R  ++ + L EL  
Sbjct: 448 AGKWENVHSIRYEMKHYGVYKEPGCSWVEIRDSAYVFYAGDVSLCARGSEVASLLRELER 507

Query: 477 ECERLGYVPVWDEMLH-NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535
             +  GYV     ++  +V +  K E +  HSE+LALAFGL+S  P+G T+R++KNLR+C
Sbjct: 508 RMKERGYVGGSRGLVSIDVEEEAKEEIVGLHSERLALAFGLIS-IPKGVTIRVMKNLRMC 566

Query: 536 RDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           RDCHE+FK IS +VER+ VVRDVNR+H F NGSCTC D W
Sbjct: 567 RDCHEAFKLISEIVERDFVVRDVNRFHHFENGSCTCRDFW 606


>gi|302781198|ref|XP_002972373.1| hypothetical protein SELMODRAFT_97177 [Selaginella moellendorffii]
 gi|300159840|gb|EFJ26459.1| hypothetical protein SELMODRAFT_97177 [Selaginella moellendorffii]
          Length = 485

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 270/484 (55%), Gaps = 11/484 (2%)

Query: 97  PNQRTLASLFKTCASL---SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
           PN  TL+     C++L   S       SL     +   H K    + L+ FY++  S D+
Sbjct: 8   PNNHTLSIAIAACSALVDLSRGRKIHASLEGCGFQADDHVK----NTLMDFYTKCDSLDD 63

Query: 154 AKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
            KKVF  +  +  VV +  +IVG  Q     ++   F  M    + +     +  L A +
Sbjct: 64  VKKVFRSMGGDAKVVSWTCLIVGCVQLGSYREAFHFFKLMELQGIHADTVTYASLLDACS 123

Query: 213 ELAAMEQCRVIHGHAVVSGL-DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
            LA++ Q R +H      GL + +V++ T ++  Y K G + +AR +FD  +   N +AW
Sbjct: 124 NLASLSQGRKLHARIAELGLLEADVVLQTSILTMYSKCGRLGEARGIFD-RIGEKNIVAW 182

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           +A++  YAQ GD ST L+LF  +E  G    E +F++VL A  +AGL  ++  +   MK 
Sbjct: 183 SAIIIAYAQNGDCSTALKLFWKMEQAGQKASETTFVSVLYACSHAGLVDDAYYYFTTMKS 242

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
             KLEP   HY C++  +GRAGRL DAE +   M       +W  LL     HG   +A 
Sbjct: 243 ERKLEPLPGHYGCIVDLLGRAGRLADAEELIQRMKAPQSGVLWTTLLGACKTHGDMKLAE 302

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           +  +R+ +++P   + YV+++NV S  GRWD  A VRK M D +V+K  G+SW+EV+GK+
Sbjct: 303 RAAERIRELDPGSATPYVLLSNVYSEAGRWDLAASVRKRMDDMKVKKPAGKSWVEVRGKL 362

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F+AGD+ H +  +I  +L  L+   +  GY       LHN  + EK   L+YHSEKLA
Sbjct: 363 HEFVAGDQSHPKIGEIVLELKRLLALIKEAGYAADKSATLHNAEEEEKEGLLYYHSEKLA 422

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +  GL+  +PRG+ +++VKNLR+C DCH + K+IS+V +R+IV+RD  ++H F +G C+C
Sbjct: 423 MVMGLLH-SPRGEPVQVVKNLRVCSDCHTAAKFISKVEDRQIVLRDTKQFHHFEHGRCSC 481

Query: 572 GDLW 575
           GD W
Sbjct: 482 GDYW 485



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 2/245 (0%)

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M         + +S A+ A + L  + + R IH      G   +  V   L+D Y K   
Sbjct: 1   MNQEGTAPNNHTLSIAIAACSALVDLSRGRKIHASLEGCGFQADDHVKNTLMDFYTKCDS 60

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + D ++VF         ++W  ++ G  Q G        F L+E++G   D  ++ ++L 
Sbjct: 61  LDDVKKVFRSMGGDAKVVSWTCLIVGCVQLGSYREAFHFFKLMELQGIHADTVTYASLLD 120

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  N     +  K   R+     LE  +   T +++   + GRL +A  I   +  E + 
Sbjct: 121 ACSNLASLSQGRKLHARIAELGLLEADVVLQTSILTMYSKCGRLGEARGIFDRIG-EKNI 179

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDI-NPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
             W A++   A +G    A K+  ++        ++ +V V    S  G  D+       
Sbjct: 180 VAWSAIIIAYAQNGDCSTALKLFWKMEQAGQKASETTFVSVLYACSHAGLVDDAYYYFTT 239

Query: 431 MKDRR 435
           MK  R
Sbjct: 240 MKSER 244


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 180/562 (32%), Positives = 311/562 (55%), Gaps = 11/562 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           R++HAR +KS    D  I + L++ Y        + +LF+ +P  + +SW +L+S  S  
Sbjct: 71  RVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRI 130

Query: 76  -NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +    L +F +M     ++F  N+ TL S+   CA  + A   G  LH  ++KL +  +
Sbjct: 131 GDLGNCLRVFYTM--RYEMAFEWNELTLLSVISACA-FAKARDEGWCLHCCAVKLGMELE 187

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +A ++ Y +F   D+A K+F  + E+++V + +M+  + QN    ++++ F  MR 
Sbjct: 188 VKVVNAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRV 247

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           + +      +   L+A  +L        IHG     GL+ N+ + T L++ Y K G ++ 
Sbjct: 248 NGLFPDEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNV 307

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           + +VF E +S  + +A  AM+AGYA  G     +E F      G  PD  +F  +L+A  
Sbjct: 308 SHKVFAE-ISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACS 366

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           ++GL  + + + + M   Y+++P L+HY+C++  +GR G L DA R+  +MP EP++ VW
Sbjct: 367 HSGLVMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVW 426

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    ++   ++  +  + LI +NP D   Y++++N+ S  G W + ++VR +MK +
Sbjct: 427 GALLGACRVYRNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDASKVRALMKTK 486

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
              +  G S+IE   K+H F+  D  H  ++ I+ KL E+M + + +G+V   + +LH+V
Sbjct: 487 VFIRNAGCSFIEHGNKIHRFVVDDYSHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDV 546

Query: 495 GDREKREALWYHSEKLALAFG-LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
            +  K + +  HSEK+ALAFG LVS A     L I+KNLRIC DCH + K++S + +R I
Sbjct: 547 DEEVKTDMINKHSEKIALAFGLLVSNA--DMPLVIIKNLRICLDCHNTAKFVSLIEKRTI 604

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD  R+H F +G C+C D W
Sbjct: 605 IIRDSKRFHHFSDGLCSCADYW 626



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 6/173 (3%)

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
           CRVIH   + S   R+  +G  L+  Y   G   DA+++FDE +   +SI+WN++++G++
Sbjct: 70  CRVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDE-MPHKDSISWNSLVSGFS 128

Query: 280 QQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCNAGLAGESEKW-IERMKVRYKLEP 337
           + GD    L +F+ +     F  +E + L+V++A   A      E W +    V+  +E 
Sbjct: 129 RIGDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFA--KARDEGWCLHCCAVKLGMEL 186

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            ++     I+  G+ G ++ A ++  A+P E +   W ++L+    +G  + A
Sbjct: 187 EVKVVNAFINMYGKFGCVDSAFKLFWALP-EQNMVSWNSMLAVWTQNGIPNEA 238


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 184/566 (32%), Positives = 298/566 (52%), Gaps = 26/566 (4%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR L     DR +  +  +++ Y ++  ++ +  LF+ +P  N+VSWTA+IS ++ 
Sbjct: 158 RVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 77  SP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +    L+  +F  M     +S+      L    +       A LF          +  H 
Sbjct: 218 NGEVNLARKLFEVMPERNEVSW---TAMLVGYIQAGHVEDAAELFN--------AMPEHP 266

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
              C + +V F  R    D AK VF+++RERD   + AMI  + QN  L+++LS F +M 
Sbjct: 267 VAACNAMMVGFGQRGMV-DAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREML 325

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              V      V   L   A LA ++  R +H   +    D +V   + LI  Y K G + 
Sbjct: 326 WRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLD 385

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A+RVF       + + WN+M+ GYAQ G     L +FH + + G +PD  +++  LTA 
Sbjct: 386 KAKRVF-HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTAC 444

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G   E  +    M V   + PG EHY+C++  +GR+G +E+A  +   MP EPDA +
Sbjct: 445 SYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVI 504

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W AL+    +H  A++A    K+L+++ P +   YV+++++ + VGRW++ +++RK +  
Sbjct: 505 WGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISS 564

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRM----HERTEDIYTKLAELMEECERLGYVPVWDE 489
           R + K  G SWIE   +VH+F +GD +    H     I  KL  L+ E    GY      
Sbjct: 565 RNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMES---GYSADGSF 621

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +LH++ + +K  +L YHSE+ A+A+GL+   P G  +R++KNLR+C DCH + K I+++ 
Sbjct: 622 VLHDIDEEQKSHSLRYHSERQAVAYGLLK-IPEGMPIRVMKNLRVCGDCHSAIKLIAKIT 680

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
            REIV+RD NR+H F +G C+C D W
Sbjct: 681 SREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 126/272 (46%), Gaps = 38/272 (13%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMRSSDVGSTMYCVSG-ALR 209
           + A+  F+ +  R    Y A++ G+ +N RL D +L +F  M S D+ S    +SG +LR
Sbjct: 34  EGARAAFEAMPLRTTASYNALLAGYFRN-RLPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 210 ------AAAELAAME-QCRVIHGHAVVSGL-----------------DRNVIVGTGLIDG 245
                 AAA LA++     V+   +++ G                  +RN +  T L+ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
              AG V++ARR+FDE +   + +AW AM++GY Q G  +    LF  +  R       S
Sbjct: 153 LLDAGRVNEARRLFDE-MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV----S 207

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           + A+++     G    + K  E M  R ++      +T ++    +AG +EDA  +  AM
Sbjct: 208 WTAMISGYAQNGEVNLARKLFEVMPERNEVS-----WTAMLVGYIQAGHVEDAAELFNAM 262

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           P  P AA    ++ F    G  D A  + +++
Sbjct: 263 PEHPVAACNAMMVGFGQ-RGMVDAAKTVFEKM 293


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 186/568 (32%), Positives = 306/568 (53%), Gaps = 19/568 (3%)

Query: 19  RIVHARALKSSQADRSIYNNL-----ITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           R +HAR L  +    SI   L         S    + Y+ +LF+ I  PNI SW ++I  
Sbjct: 5   RQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRG 64

Query: 74  HSNSPLS----LNIFLSMLR--HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
            S S       + +F  M+R  +P     PN  T+A + K C+ +S A   G  +H+  L
Sbjct: 65  CSQSQTPSKEPVILFRKMVRRGYPN----PNTFTMAFVLKACSIVS-ALEEGQQVHANVL 119

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
           K      PF  +ALV+FY++      A KVFDEI +R++V +  MI G+A+   + ++L 
Sbjct: 120 KSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALG 179

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           +F DM+ + V      +   + A A   A++  + +H +     ++ ++ + T L++ Y 
Sbjct: 180 LFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYA 239

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G +  A+ VFD  + V ++ AW++M+ G A  G     LE F  +E     P+  +F+
Sbjct: 240 KCGCIERAKEVFDA-MPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFI 298

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            VL+A  ++GL  E  ++   M + + + P +E Y C++  + RA  +EDA  +   MP 
Sbjct: 299 GVLSACAHSGLVSEGRRYWSSM-LEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPI 357

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            P+  +WR LL         D +  + +RL+++ P++   Y++++N+ + + +W+++++V
Sbjct: 358 SPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQV 417

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           RK MK   ++   G S IEV G VH F+ GD  H    ++   L ++ +    +G+ P  
Sbjct: 418 RKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGI 477

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
            ++LHNV D EK  AL  HSE+LA+A+GL+        +RIVKNLR+C DCHE  K IS 
Sbjct: 478 SDVLHNVVDEEKENALCEHSERLAIAYGLLK-TKTPMAIRIVKNLRVCGDCHEVTKIISA 536

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
              REI+VRD  R+H+F+NGSC+C D W
Sbjct: 537 EYRREIIVRDRVRFHKFVNGSCSCRDFW 564


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 190/572 (33%), Positives = 301/572 (52%), Gaps = 29/572 (5%)

Query: 18  PRIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           PR   AR L  K  + +   +N L++ Y ++ ++S + ++F+ +P  N+VSWTA+I  + 
Sbjct: 10  PR--EARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYV 67

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              L     L   R P  + +     L  L +         LF +        + + D  
Sbjct: 68  QEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDM--------MPVKDVV 119

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG-------------FAQNSRL 182
              + +    S  R  + A+++FDE+ +R+VV + +MI G             + +    
Sbjct: 120 ASTNMIDGLCSEGRLIE-AREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFE 178

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
           +++L++F+ M+   V  +   V   L     LA+++  R +H   V S  D ++ V + L
Sbjct: 179 LEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVL 238

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
           I  Y K G +  A+RVFD   S  + + WN+++AGYAQ G     LE+FH +     APD
Sbjct: 239 ITMYIKCGDLVTAKRVFD-RFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPD 297

Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
           E +F+ VL+A    G   E  +  E MK +Y+++P  EHY C++  +GRAG+L +A  + 
Sbjct: 298 EITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLI 357

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             MP E DA VW ALL     H   D+A    K+L+ + P +   Y++++N+ S   RW 
Sbjct: 358 ENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWK 417

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM-HERTEDIYTKLAELMEECERL 481
           +V E+RK M+ + +RK  G SWIEV  KVH+F  G    H   E I  KL +L       
Sbjct: 418 DVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREA 477

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           GY P    ++H+V + EK  +L  HSEKLA+A+GL+   P G  +R++KNLR+C D H +
Sbjct: 478 GYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLK-VPEGMPIRVMKNLRVCGDSHST 536

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
            K I++V  REI++RD NR+H F +G C+C D
Sbjct: 537 IKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 118/280 (42%), Gaps = 25/280 (8%)

Query: 17  DPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           D R+  AR L      + +    N+I        L  +  +F+ +P  N+V+WT++IS  
Sbjct: 100 DGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGE 159

Query: 75  SNSPL----------------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF 118
            +                   +L +F  M R       P+  ++ S+  + ASL H    
Sbjct: 160 KDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDH---- 215

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +HS  ++       +  S L+  Y +      AK+VFD    +D+V + ++I G+AQ
Sbjct: 216 GRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQ 275

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVI 237
           +     +L VF DM SS +        G L A +    + E   +         +D    
Sbjct: 276 HGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTE 335

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSV-LNSIAWNAMMA 276
               ++D  G+AG +++A  +  EN+ V  ++I W A++ 
Sbjct: 336 HYACMVDLLGRAGKLNEAMNLI-ENMPVEADAIVWGALLG 374


>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 556

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 176/478 (36%), Positives = 266/478 (55%), Gaps = 4/478 (0%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKV 157
           ++ + +S+F  CA+  +   FG  +H ++LKL + +  +  ++L   Y +    ++  K+
Sbjct: 83  DEVSFSSVFSACANAGN-LEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKL 141

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           F     RDVV +  MI+ +  N    D+ + F  MR           S  L + A LAA+
Sbjct: 142 FSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAAL 201

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
            Q  +IH   + SG  +N+ V + LI  Y K G + DA ++F+E     N + W A++A 
Sbjct: 202 YQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETED-RNVVCWTAIIAA 260

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
             Q G  + V+ELF  +   G  PD  +F++VL+A  + G   E   +   M   + + P
Sbjct: 261 CQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYP 320

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           G EHY C++  + RAG L+ A+R    MP +PDA+VW ALLS    H    M  ++  +L
Sbjct: 321 GHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKL 380

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
            D+ P +   YV++ N+L+  G  +E  EVR+ M+   VRKE G SWI++K   +VF   
Sbjct: 381 FDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVH 440

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
           D+ HE+T++IY  L +L E  ++ GYV    E   N  +  K ++LWYHSEK+ALAFGL+
Sbjct: 441 DKSHEKTKEIYEMLEKLKELVKKKGYVAE-TEFAINTAEEYKEQSLWYHSEKIALAFGLL 499

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S  P G  +RI KNLR C DCH   K+ S +  REI+VRD+NR+H F NG C+CGD W
Sbjct: 500 S-LPAGAPIRIKKNLRTCGDCHTVMKFASEIFAREIIVRDINRFHHFTNGICSCGDYW 556



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 34/329 (10%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN  T +++   C   + A + G  +HSL  K     + F  SALV  Y++      A+K
Sbjct: 8   PNHYTFSAVLSACTDTT-ASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEK 66

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF+E+                  + L+++L+   ++  S V S          A A    
Sbjct: 67  VFEEMP-----------------TLLLENLTALDEVSFSSVFS----------ACANAGN 99

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +E  + +HG A+  G+   V +   L D YGK G+ +D  ++F  N    + + WN M+ 
Sbjct: 100 LEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFS-NTGARDVVTWNIMIM 158

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336
            Y    +       F ++  +G  PDE S+ +VL +  N   A      I    +R    
Sbjct: 159 AYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLA-ALYQGTLIHNQIIRSGFV 217

Query: 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396
             L   + LI+   + G L DA +I      + +   W A+++    HG A+   ++ ++
Sbjct: 218 KNLRVASSLITMYAKCGSLVDAFQIFEETE-DRNVVCWTAIIAACQQHGHANWVVELFEQ 276

Query: 397 LI--DINPYDDSAYVIVANVLSGVGRWDE 423
           ++   I P D   +V V +  S  GR +E
Sbjct: 277 MLREGIKP-DYITFVSVLSACSHTGRVEE 304



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 148/333 (44%), Gaps = 29/333 (8%)

Query: 21  VHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
           VH  ALK    +    NN +++ Y K  L +   +LF++  + ++V+W  +I A+    N
Sbjct: 106 VHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHN 165

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              + N F  M R  +   +P++ + +S+  +CA+L+ A   G  +H+  ++        
Sbjct: 166 YEDACNSFWMMRRKGS---IPDEASYSSVLHSCANLA-ALYQGTLIHNQIIRSGFVKNLR 221

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             S+L+  Y++  S  +A ++F+E  +R+VVC+ A+I    Q+      + +F  M    
Sbjct: 222 VASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREG 281

Query: 197 VGSTMYCVSGALRAAAELAAMEQC-----RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           +          L A +    +E+       +I  H +  G +    +    +D   +AG 
Sbjct: 282 IKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACI----VDLLSRAGE 337

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGD----QSTVLELFHLLEMRGFAPDEY-SF 306
           +  A+R  +      ++  W A+++      +    +   L+LF L       PD   ++
Sbjct: 338 LDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDL------EPDNPGNY 391

Query: 307 LAVLTALCNAGLAGESEKWIERMK-VRYKLEPG 338
           + +   L   G+  E+++   +M+ +  + EPG
Sbjct: 392 VLLCNILTRNGMLNEADEVRRKMESIGVRKEPG 424



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 14/172 (8%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HS 75
           ++H + ++S    +  + ++LIT Y+K   L  + ++F      N+V WTA+I+A   H 
Sbjct: 206 LIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHG 265

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS---LSHAFLFGLSLHSLSLKLSLH 132
           ++   + +F  MLR       P+  T  S+   C+    +   F +  S+  +      H
Sbjct: 266 HANWVVELFEQMLRE---GIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGH 322

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLV 183
           +   C   +V   SR    D AK+  + +  + D   +GA++     +S L+
Sbjct: 323 EHYAC---IVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLI 371


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 185/601 (30%), Positives = 308/601 (51%), Gaps = 49/601 (8%)

Query: 17  DPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           + R +HA  + +    D  +   LI  Y K      +  +F+ +   ++VSW  +I  + 
Sbjct: 225 EGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYV 284

Query: 76  -----NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
                +  L L   L M       F   + T  S+   C+S+  A   G  +HS  L+  
Sbjct: 285 LNGDFHEALELYQKLDME-----GFKRTKATFVSILGACSSVK-ALAQGRLVHSHILERG 338

Query: 131 LHDKPFCGSALVHFYSR----------FRSPDN------------------------AKK 156
           L  +    +ALV+ Y++          F +  N                        A+K
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARK 398

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSDVGSTMYCVSGALRAAAELA 215
           VFD +  RD + + AMI  + QN   V ++ +F +M  ++ +          L A A L 
Sbjct: 399 VFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLG 458

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            + + + +H     S L+ NV+V   LI+ Y + G + +A R+F         ++W AM+
Sbjct: 459 RLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLF-AAAKEKTVVSWTAMV 517

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           A ++Q G  +  L+LF  +++ G  PD+ ++ ++L    + G   +  ++   M   + L
Sbjct: 518 AAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHAL 577

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
            P  +H+  ++  +GR+GRL DA+ +  +MPFEPD   W   L+   IHGK ++     +
Sbjct: 578 APTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAE 637

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
           R+ +++P   + Y+ ++N+ +  G W++VA VRK M++R ++K  G S+IEV GK+H F 
Sbjct: 638 RVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFS 697

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
           +G + H RT++I  +L  L       GYVP    +LH+V + EK   L YHSEK+A+AFG
Sbjct: 698 SGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFG 757

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF-LNGSCTCGDL 574
           LVS    G+ +R+VKNLR+C DCH + K+I+R+  R+I+VRD NR+HRF  +G C+CGD 
Sbjct: 758 LVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDY 817

Query: 575 W 575
           W
Sbjct: 818 W 818



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 183/383 (47%), Gaps = 13/383 (3%)

Query: 17  DPRIVHARALKSSQADRS--IYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALIS 72
           + R +H R ++ S+ +R   + N LI+ Y K + L  +  +F  +     N+VSW A+I+
Sbjct: 25  EGRALHER-IRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIA 83

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           A++ +  S    +   R        +  T  S+   C+SL+     G  +H+      L 
Sbjct: 84  AYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ----GREIHNRVFYSGLD 139

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                 +ALV  Y+RF S  +AK++F  ++ RD   + A+I+  +Q+     +L +F +M
Sbjct: 140 SFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM 199

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           +  DV          +   +    + + R IH   V +G D +++V T LI+ YGK G  
Sbjct: 200 K-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSS 258

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            +AR VFD+ +   + ++WN M+  Y   GD    LEL+  L+M GF   + +F+++L A
Sbjct: 259 HEAREVFDK-MKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGA 317

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            C++  A    + +    +   L+  +   T L++   + G LE+A ++  AM    DA 
Sbjct: 318 -CSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAV 375

Query: 373 VWRALLSFSAIHGKADMASKMGK 395
            W  L+   A +G    A K  K
Sbjct: 376 AWSTLIGAYASNGYGKDARKARK 398



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 179/409 (43%), Gaps = 51/409 (12%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H R   S   + +S+ N L+T Y++   +  + R+F  + + +  SW A+I AHS S
Sbjct: 127 REIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQS 186

Query: 78  ---PLSLNIFLSMLRHPTLSFLPNQRT---LASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
                +L IF  M         PN  T   + S F T   L      G  +H+  +    
Sbjct: 187 GDWSGALRIFKEM----KCDVKPNSTTYINVISGFSTPEVLPE----GRKIHAEIVANGF 238

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                  +AL++ Y +  S   A++VFD++++RD+V +  MI  +  N    ++L ++  
Sbjct: 239 DTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQK 298

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           +       T       L A + + A+ Q R++H H +  GLD  V V T L++ Y K G 
Sbjct: 299 LDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGS 358

Query: 252 VSDARRVFD---------------------------------ENLSVLNSIAWNAMMAGY 278
           + +AR+VF+                                 + L   ++I+WNAM+  Y
Sbjct: 359 LEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTY 418

Query: 279 AQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
            Q G     +++F  +    G  PD  +F+AVL A  + G   E  K +       +LE 
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV-KALHAQISESELES 477

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
            +     LI+   R G LE+AER+  A   E     W A+++  + +G+
Sbjct: 478 NVVVTNTLINMYARCGSLEEAERL-FAAAKEKTVVSWTAMVAAFSQYGR 525



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 19/216 (8%)

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYA 279
           R +H     S  +R+ +VG  LI  YGK   + DAR VF+  +    N ++WNAM+A YA
Sbjct: 27  RALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYA 86

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G  +  L L+  + ++G   D  +F++VL A  +     E        +V Y    GL
Sbjct: 87  QNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGREIHN-----RVFY---SGL 138

Query: 340 EHYTCLISAM----GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           + +  L +A+     R G + DA+R+  ++    D   W A++   +  G    A ++ K
Sbjct: 139 DSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETSWNAVILAHSQSGDWSGALRIFK 197

Query: 396 RL-IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
            +  D+ P + + Y+   NV+SG    + + E RK+
Sbjct: 198 EMKCDVKP-NSTTYI---NVISGFSTPEVLPEGRKI 229


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 186/564 (32%), Positives = 304/564 (53%), Gaps = 22/564 (3%)

Query: 19  RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA  +++   ++ SI   ++  Y K   L  + R+F+ +     V+WT L+  ++ +
Sbjct: 202 RQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQA 261

Query: 78  PLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             +   L +F+ ++   T     +    + + K CASL     FG  +H+   KL L  +
Sbjct: 262 GRARDALKLFVDLI---TEGVEWDSFVFSVVLKACASLEE-LRFGKQIHACVAKLGLECE 317

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              G+ LV FY +  S ++A + F EIRE + V + A+I G+ Q S+  +++  F  +RS
Sbjct: 318 VSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRS 377

Query: 195 SD-VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
            + V    +  +   +A + LA       +H  A+   L  +    + LI  Y K G + 
Sbjct: 378 KNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLD 437

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA  VF E++   + +AW A ++G+A  G+ S  L LF  +   G  P+  +F+AVLTA 
Sbjct: 438 DAHEVF-ESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTAC 496

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            +AGL  + + +++ M  +Y + P ++HY C+I    R+G L++A R    MPFEPDA  
Sbjct: 497 SHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDAMS 556

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W+  LS    H   ++    G+ L  ++P D + YV+  N+ +  G+W+E AEV K+M +
Sbjct: 557 WKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNE 616

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R ++KE   SWI+ KGK+H F+ GD+ H ++++IY KL E        G++   +  +  
Sbjct: 617 RMLKKELSCSWIQEKGKIHRFIVGDKHHPQSQEIYEKLKEFD------GFM---EGDMFQ 667

Query: 494 VGDREKREALWYHSEKLALAFGLVS--GAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
               E+RE L  HSE+LA+AFGL+S  G  R   +++ KNLR C DCHE  K++S V   
Sbjct: 668 CSMTERREQLLDHSERLAIAFGLISVNGNARA-PIKVFKNLRACPDCHEFAKHVSLVTGH 726

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EIV+RD  R+H F  G C+C D W
Sbjct: 727 EIVIRDSRRFHHFKEGKCSCNDYW 750



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 175/393 (44%), Gaps = 18/393 (4%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           + N ++  Y +   L  + +LF+ +   N VS T +ISA++   L   ++ +F  ML   
Sbjct: 118 LQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESG 177

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                P      +L K+  +   A   G  +H+  ++  L       + +V+ Y +    
Sbjct: 178 DK---PPSSMYTTLLKSLVN-PRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWL 233

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             AK+VFD++  +  V +  ++VG+ Q  R  D+L +F D+ +  V    +  S  L+A 
Sbjct: 234 VGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKAC 293

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A L  +   + IH      GL+  V VGT L+D Y K      A R F E +   N ++W
Sbjct: 294 ASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQE-IREPNDVSW 352

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTA---LCNAGLAGESEKWIE 327
           +A+++GY Q       ++ F  L  +     + +++ ++  A   L +  + G+    + 
Sbjct: 353 SAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQ----VH 408

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
              ++  L       + LI+   + G L+DA  +  +M   PD   W A +S  A +G A
Sbjct: 409 ADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMD-NPDIVAWTAFISGHAYYGNA 467

Query: 388 DMASKMGKRLIDINPYDDS-AYVIVANVLSGVG 419
             A ++ ++++      +S  ++ V    S  G
Sbjct: 468 SEALRLFEKMVSCGMKPNSVTFIAVLTACSHAG 500



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 104/226 (46%), Gaps = 3/226 (1%)

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           +V  +++ +L ++   F +M  + V  ++Y       A  EL ++   R++H    +   
Sbjct: 53  LVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIE 112

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
           + +V++   ++  Y + G + DA ++FDE +S LN+++   M++ YA+QG     + LF 
Sbjct: 113 NPSVLLQNCVLQMYCECGSLEDADKLFDE-MSDLNAVSRTTMISAYAEQGLLDKAVGLFS 171

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
            +   G  P    +  +L +L N   A +  + I    +R  L       T +++   + 
Sbjct: 172 RMLESGDKPPSSMYTTLLKSLVNP-RALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKC 230

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           G L  A+R+   M  +   A W  L+      G+A  A K+   LI
Sbjct: 231 GWLVGAKRVFDQMAVKKPVA-WTGLMVGYTQAGRARDALKLFVDLI 275


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 193/564 (34%), Positives = 306/564 (54%), Gaps = 40/564 (7%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPL---SLNIF 84
           D   +N ++T YS++     +L LF  +    I    V+W+++IS ++       ++++F
Sbjct: 104 DVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVF 163

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-------DKPFC 137
             M         PN  TL SL   CAS+  A L G   H  S+K  L        D    
Sbjct: 164 RQMC---GCRCRPNVVTLMSLLSACASVG-ALLHGKETHCYSVKFILKGEHNDDTDDLAV 219

Query: 138 GSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            +AL+  Y++ +S + A+ +FDEI  ++RDVV +  MI G+AQ+     +L +F++M   
Sbjct: 220 INALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKI 279

Query: 196 D--VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV-SGLDRNVI-VGTGLIDGYGKAGI 251
           D  +    + +S  L A A LAA++  + IH + +  S +D +V+ V   LID Y K+G 
Sbjct: 280 DNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGD 339

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           V  A+ VFD ++S  N+++W +++ GY   G                   D  +FL VL 
Sbjct: 340 VDTAQVVFD-SMSKRNAVSWTSLLTGYGMHG--------------AALVLDGITFLVVLY 384

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  ++G+         RM   + ++PG+EHY C+    GRAGRL +A R+   M  EP  
Sbjct: 385 ACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTP 444

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            VW ALLS    H   ++A    K+L+++   +D  Y +++N+ +   RW +VA +R +M
Sbjct: 445 VVWIALLSACRTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIRYLM 504

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           K   ++K  G SW++ +  +  F  GDR H +++ IY  LA+L++  + +GYVP  +  L
Sbjct: 505 KRTGIKKRPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKAIGYVPQTNFSL 564

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H+V D EK + L  HSEKLALA+ +++  P G  +RI KNLRIC D H +  YIS +VE 
Sbjct: 565 HDVDDEEKGDQLLEHSEKLALAYAILT-LPPGAPIRITKNLRICGDFHSAITYISMIVEH 623

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI++RD +R+H+F NGSC+C   W
Sbjct: 624 EIILRDSSRFHQFKNGSCSCKGYW 647



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 160/378 (42%), Gaps = 76/378 (20%)

Query: 61  SPNI-VSWTALISAHSNSPLSLNIFLSMLRHPTLSF--LPNQRTLASLFKTCASLSHAFL 117
           SP I VSW +++S +S+  +  N  + + R  T+ +  LP+   + ++      L     
Sbjct: 19  SPLISVSWNSIVSVYSHCFVP-NDAVFLFREMTVGYGILPDTVGVVNILPVSGFLGF--- 74

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
                             F G+ALV  Y++    ++A KVF+ +R +DVV + AM+ G++
Sbjct: 75  ------------------FVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYS 116

Query: 178 QNSRLVDSLSVFADMRSS----DVGSTMYCVSG--------------------------- 206
           QN R  D+LS+F  MR      DV +    +SG                           
Sbjct: 117 QNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVV 176

Query: 207 ----ALRAAAELAAMEQCRVIHGHAVVSGLD-------RNVIVGTGLIDGYGKAGIVSDA 255
                L A A + A+   +  H ++V   L         ++ V   LID Y K   +  A
Sbjct: 177 TLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVA 236

Query: 256 RRVFDENLSV-LNSIAWNAMMAGYAQQGDQSTVLELFHLLEM----RGFAPDEYSFLAVL 310
           R +FDE      + + W  M+ GYAQ GD +  L+LF   EM        P++++   VL
Sbjct: 237 RAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFS--EMFKIDNCIVPNDFTISCVL 294

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
            A          ++    +  R +++   L    CLI    ++G ++ A+ +  +M  + 
Sbjct: 295 MACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KR 353

Query: 370 DAAVWRALLSFSAIHGKA 387
           +A  W +LL+   +HG A
Sbjct: 354 NAVSWTSLLTGYGMHGAA 371


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 184/563 (32%), Positives = 300/563 (53%), Gaps = 13/563 (2%)

Query: 19  RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           RI+H   + S    ++ I N L++ Y K   +S S R+   +P  ++V+W ALI  ++  
Sbjct: 382 RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 441

Query: 76  -NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            +   +L  F +M      S   N  T+ S+   C         G  LH+  +       
Sbjct: 442 EDPDKALAAFQTMRVEGVSS---NYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESD 498

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               ++L+  Y++     +++ +F+ +  R+++ + AM+   A +    + L + + MRS
Sbjct: 499 EHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRS 558

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V    +  S  L AAA+LA +E+ + +HG AV  G + +  +     D Y K G + +
Sbjct: 559 FGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGE 618

Query: 255 ARRVFDENLSVLNSI-AWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTA 312
             ++     SV  S+ +WN +++   + G    V   FH +LEM G  P   +F+++LTA
Sbjct: 619 VVKMLPP--SVNRSLPSWNILISALGRHGYFEEVCATFHEMLEM-GIKPGHVTFVSLLTA 675

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL  +   + + +   + LEP +EH  C+I  +GR+GRL +AE     MP +P+  
Sbjct: 676 CSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDL 735

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           VWR+LL+   IHG  D   K  + L  + P DDS YV+ +N+ +  GRW++V  VRK M 
Sbjct: 736 VWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMG 795

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            + ++K+   SW+++K KV  F  GDR H +T +IY KL ++ +  +  GYV    + L 
Sbjct: 796 FKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQ 855

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +  + +K   LW HSE+LALA+ L+S  P G T+RI KNLRIC DCH  +K++SRV+ R 
Sbjct: 856 DTDEEQKEHNLWNHSERLALAYALMS-TPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRR 914

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IV+RD  R+H F  G C+C D W
Sbjct: 915 IVLRDQYRFHHFERGLCSCKDYW 937



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 178/384 (46%), Gaps = 12/384 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +  + +KS  ++  ++ N+LI+       + Y+  +F+ +   + +SW ++ +A++ +
Sbjct: 180 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 239

Query: 78  ---PLSLNIFLSMLR-HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                S  IF  M R H  +    N  T+++L      + H   +G  +H L +K+    
Sbjct: 240 GHIEESFRIFSLMRRFHDEV----NSTTVSTLLSVLGHVDHQ-KWGRGIHGLVVKMGFDS 294

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + L+  Y+       A  VF ++  +D++ + +++  F  + R +D+L +   M 
Sbjct: 295 VVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMI 354

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           SS         + AL A       E+ R++HG  VVSGL  N I+G  L+  YGK G +S
Sbjct: 355 SSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMS 414

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           ++RRV  + +   + +AWNA++ GYA+  D    L  F  + + G + +  + ++VL+A 
Sbjct: 415 ESRRVLLQ-MPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC 473

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G   E  K +    V    E        LI+   + G L  ++ +   +    +   
Sbjct: 474 LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIIT 532

Query: 374 WRALLSFSAIHGKADMASKMGKRL 397
           W A+L+ +A HG  +   K+  ++
Sbjct: 533 WNAMLAANAHHGHGEEVLKLVSKM 556



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 154/344 (44%), Gaps = 17/344 (4%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
           Y+K   +  +  LF+ +P  N VSW  ++S      L L       +   L   P+   +
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           ASL   C      F  G+ +H    K  L    +  +A++H Y  +     ++KVF+E+ 
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +R+VV + +++VG++      + + ++  MR   VG     +S  + +   L      R 
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQ 181

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           I G  V SGL+  + V   LI   G  G V  A  +FD+ +S  ++I+WN++ A YAQ G
Sbjct: 182 IIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQ-MSERDTISWNSIAAAYAQNG 240

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW---IERMKVRYKLEPGL 339
                  +F L  MR F  DE +   V T L   G   + +KW   I  + V+     G 
Sbjct: 241 HIEESFRIFSL--MRRF-HDEVNSTTVSTLLSVLGHV-DHQKWGRGIHGLVVKM----GF 292

Query: 340 EHYTCLISAMGR----AGRLEDAERIAMAMPFEPDAAVWRALLS 379
           +   C+ + + R    AGR  +A  +   MP   D   W +L++
Sbjct: 293 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMP-TKDLISWNSLMA 335


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 184/563 (32%), Positives = 300/563 (53%), Gaps = 13/563 (2%)

Query: 19   RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
            RI+H   + S    ++ I N L++ Y K   +S S R+   +P  ++V+W ALI  ++  
Sbjct: 472  RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 531

Query: 76   -NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             +   +L  F +M      S   N  T+ S+   C         G  LH+  +       
Sbjct: 532  EDPDKALAAFQTMRVEGVSS---NYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESD 588

Query: 135  PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
                ++L+  Y++     +++ +F+ +  R+++ + AM+   A +    + L + + MRS
Sbjct: 589  EHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRS 648

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
              V    +  S  L AAA+LA +E+ + +HG AV  G + +  +     D Y K G + +
Sbjct: 649  FGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGE 708

Query: 255  ARRVFDENLSVLNSI-AWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTA 312
              ++     SV  S+ +WN +++   + G    V   FH +LEM G  P   +F+++LTA
Sbjct: 709  VVKMLPP--SVNRSLPSWNILISALGRHGYFEEVCATFHEMLEM-GIKPGHVTFVSLLTA 765

Query: 313  LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
              + GL  +   + + +   + LEP +EH  C+I  +GR+GRL +AE     MP +P+  
Sbjct: 766  CSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDL 825

Query: 373  VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            VWR+LL+   IHG  D   K  + L  + P DDS YV+ +N+ +  GRW++V  VRK M 
Sbjct: 826  VWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMG 885

Query: 433  DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
             + ++K+   SW+++K KV  F  GDR H +T +IY KL ++ +  +  GYV    + L 
Sbjct: 886  FKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQ 945

Query: 493  NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
            +  + +K   LW HSE+LALA+ L+S  P G T+RI KNLRIC DCH  +K++SRV+ R 
Sbjct: 946  DTDEEQKEHNLWNHSERLALAYALMS-TPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRR 1004

Query: 553  IVVRDVNRYHRFLNGSCTCGDLW 575
            IV+RD  R+H F  G C+C D W
Sbjct: 1005 IVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 178/384 (46%), Gaps = 12/384 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +  + +KS  ++  ++ N+LI+       + Y+  +F+ +   + +SW ++ +A++ +
Sbjct: 270 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 329

Query: 78  ---PLSLNIFLSMLR-HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                S  IF  M R H  +    N  T+++L      + H   +G  +H L +K+    
Sbjct: 330 GHIEESFRIFSLMRRFHDEV----NSTTVSTLLSVLGHVDHQ-KWGRGIHGLVVKMGFDS 384

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + L+  Y+       A  VF ++  +D++ + +++  F  + R +D+L +   M 
Sbjct: 385 VVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMI 444

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
           SS         + AL A       E+ R++HG  VVSGL  N I+G  L+  YGK G +S
Sbjct: 445 SSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMS 504

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           ++RRV  + +   + +AWNA++ GYA+  D    L  F  + + G + +  + ++VL+A 
Sbjct: 505 ESRRVLLQ-MPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC 563

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G   E  K +    V    E        LI+   + G L  ++ +   +    +   
Sbjct: 564 LLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIIT 622

Query: 374 WRALLSFSAIHGKADMASKMGKRL 397
           W A+L+ +A HG  +   K+  ++
Sbjct: 623 WNAMLAANAHHGHGEEVLKLVSKM 646



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 160/372 (43%), Gaps = 43/372 (11%)

Query: 16  TDPRIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T  R VHA  +K       ++ N LI  Y+K   +  +  LF+ +P  N VSW  ++S  
Sbjct: 89  TTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGI 148

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
               L L       +   L   P+   +ASL   C      F  G+ +H    K  L   
Sbjct: 149 VRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSD 208

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +  +A++H Y  +     ++KVF+E+ +R+VV + +++VG++      + + ++ D   
Sbjct: 209 VYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKD--- 265

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +G                      R I G  V SGL+  + V   LI   G  G V  
Sbjct: 266 ESLG----------------------RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDY 303

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +FD+ +S  ++I+WN++ A YAQ G       +F L  MR F  DE +   V T L 
Sbjct: 304 ANYIFDQ-MSERDTISWNSIAAAYAQNGHIEESFRIFSL--MRRFH-DEVNSTTVSTLLS 359

Query: 315 NAGLAGESEKW---IERMKVRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAMPF 367
             G   + +KW   I  + V+     G +   C+ + + R    AGR  +A  +   MP 
Sbjct: 360 VLGHV-DHQKWGRGIHGLVVKM----GFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP- 413

Query: 368 EPDAAVWRALLS 379
             D   W +L++
Sbjct: 414 TKDLISWNSLMA 425



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 140/305 (45%), Gaps = 31/305 (10%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G ++H+L +K  +       + L++ Y++F     A+ +FD +  R+ V +  M+ G  +
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV-IHGHAVVSGLDRNVI 237
               ++ +  F  M    +  + + ++  + A     +M +  V +HG    SGL  +V 
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 210

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           V T ++  YG  G+VS +R+VF+E +   N ++W ++M GY+ +G+   V++++      
Sbjct: 211 VSTAILHLYGVYGLVSCSRKVFEE-MPDRNVVSWTSLMVGYSDKGEPEEVIDIY------ 263

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
               DE     ++  +  +GL  ES+  +E                 LIS +G  G ++ 
Sbjct: 264 ---KDESLGRQIIGQVVKSGL--ESKLAVE---------------NSLISMLGSMGNVDY 303

Query: 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
           A  I   M  E D   W ++ +  A +G  + + ++   +     +D+     V+ +LS 
Sbjct: 304 ANYIFDQMS-ERDTISWNSIAAAYAQNGHIEESFRIFSLMRRF--HDEVNSTTVSTLLSV 360

Query: 418 VGRWD 422
           +G  D
Sbjct: 361 LGHVD 365


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 322/615 (52%), Gaps = 47/615 (7%)

Query: 1   MALDLNQQPQPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHI 59
            +L LNQ+P+     +  + +HA+ +  +  ++ S+  +LI  Y  +     +  LF+H 
Sbjct: 77  FSLLLNQRPK----LSPLQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHY 132

Query: 60  PSPN--IVSWTALISAHS---NSPLSLNIFLSMLR-HPTLSFLPNQRTLASLFKTCASLS 113
           PSP+  I  W  +I  +S   NS   +++FL ML     +  +P++ T   +  +C S  
Sbjct: 133 PSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSC-SHQ 191

Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV------- 166
            + ++G  +H + +K       + G+++++  S F   ++A+KVF+++ ERDV       
Sbjct: 192 ISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLL 251

Query: 167 ------------------------VCYGAMIVGFAQNSRLVDSLSVFADMRSSD-VGSTM 201
                                   V +  MI GF    R  ++L+ F +M   D V    
Sbjct: 252 GGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNE 311

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
             +   L A A L A++Q   IH +    G+ ++  + T LID Y K G +  A RVF+ 
Sbjct: 312 AVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFN- 370

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            +   + +++ +M++G +  G     L +F+ +      P+E + L VL    ++GL  E
Sbjct: 371 GICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEE 430

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
               +  M+  + + P +EHY C I  +GRAG LE A  +   MP EPD  +WRALLS S
Sbjct: 431 GSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSAS 490

Query: 382 AIHGKADMASKMGKRLIDINPYD-DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
            IH   ++  ++   +  +   D +   V+++N+ + +GRW+ V E+RK+M DRR     
Sbjct: 491 RIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSP 550

Query: 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKR 500
           G SWIEV G VH F   D++H +  +I  KL E+++   ++GY     ++  ++ + EK 
Sbjct: 551 GCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKE 610

Query: 501 EALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNR 560
           +A+ +HSEKLA+AFGL+S  P G  +RIVKNLR C DCH + K IS+V  REIVVRD +R
Sbjct: 611 QAVAWHSEKLAIAFGLMSTEP-GTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSR 669

Query: 561 YHRFLNGSCTCGDLW 575
           +H F+ G C+C D W
Sbjct: 670 FHTFIEGDCSCKDFW 684



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 141/318 (44%), Gaps = 18/318 (5%)

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144
           +S+  +P    LPN +T + L      LS        +H+  +  +L       ++L+H 
Sbjct: 60  ISIPTNPIPIDLPNPQTFSLLLNQRPKLSPL----QQIHAQVVTQALSSNASLTASLIHC 115

Query: 145 YSRFRSPDNAKKVFDEIRERD--VVCYGAMIVGFAQNSRLVDSLSVFADMRSSD----VG 198
           Y   ++  NA+ +FD        +  +  MI  +++     + + +F  M + D    V 
Sbjct: 116 YLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVV 175

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
              Y  +  + + +   ++    ++HG  V SG + N+ VG  +I+       + DAR+V
Sbjct: 176 PDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKV 235

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F++ +S  +  +W +++ GYA+ G+     ELF+++ +R    ++ S+  +++     G 
Sbjct: 236 FNQ-MSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVR----NDVSWAVMISGFLGCGR 290

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM---AMPFEPDAAVWR 375
             E+  +   M    ++ P      C++SA    G L+    I +    +     + +  
Sbjct: 291 YPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNIST 350

Query: 376 ALLSFSAIHGKADMASKM 393
           AL+   A  G+ D AS++
Sbjct: 351 ALIDMYAKCGRIDCASRV 368


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 181/582 (31%), Positives = 311/582 (53%), Gaps = 32/582 (5%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA   + S + D SI N+LIT YSK   +  +  +F  +   +I+SW ++++ +  +
Sbjct: 347 REIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQN 406

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF---GLSLHSLSLK------ 128
                 F    R       P+  +L  +F   +  S   ++   G  +H   L+      
Sbjct: 407 EQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGG 466

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
           +SL       +A++  Y++F    +A+K+F  ++ RD   + AM+ G+++N++  D L +
Sbjct: 467 VSLS----VSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMI 522

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL---------DRNVIVG 239
           F D+           +S  L +   L +++  +  H  AVV+ L         D  + + 
Sbjct: 523 FLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFH--AVVAKLFNGQDCPHQDSLLSIN 580

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
             LI  Y K G + DA +VF + +   +  +W AM+ G A  G     L+LF  ++  G 
Sbjct: 581 NALISMYSKCGSIKDAAQVFLK-MERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGI 639

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
            P++ +FLA+L A  + GL  E   + + M   Y L P +EHY C+I   GR+G+ + A+
Sbjct: 640 KPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAK 699

Query: 360 R-----IAMAMPFEPDAA-VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
                 I +  P+  D   +W+ LL       + D+  +   +++++ P D++ Y+++AN
Sbjct: 700 SLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLAN 759

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + +  G W++  +VRK M+D+ +RKE G SWI+   + HVF+AGD  H + ++IY KLA+
Sbjct: 760 LYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQ 819

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L   C R+GYVP+ + +LH+V + EK   L  HSEKLA++FGL++       +R++KNLR
Sbjct: 820 LNYSCRRMGYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLR 879

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +C DCH   K+ S + +REI++RD  R+H F +GSC+CGD W
Sbjct: 880 VCEDCHSWMKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW 921



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 193/397 (48%), Gaps = 27/397 (6%)

Query: 20  IVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
           +VH R +K+     +++N+L+T Y K   L ++ +LF  I   ++VSW A+I+A+     
Sbjct: 246 MVHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGE 305

Query: 77  SPLSLNIFLSMLR-HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              +L +F  ML+  P +   PN+ T  SL    + LS A   G  +H+   +LSL    
Sbjct: 306 GENALGLFRRMLKVEPPVQ--PNRVTFLSLLSAVSGLS-ALRCGREIHAHIFRLSLEVDT 362

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              ++L+ FYS+ R    A+++F+ +  RD++ + +M+ G+ QN +      +F  M  S
Sbjct: 363 SITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLS 422

Query: 196 ----DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV--VSGLDRNVIVGTGLIDGYGKA 249
               D  S     + A R ++ L    + + IHG+ +  ++    ++ V   ++  Y K 
Sbjct: 423 GIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKF 482

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
             ++DA ++F + +   +S +WNAMM GY++      VL +F  +  +GF  D  S L++
Sbjct: 483 NRIADAEKIF-KGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVS-LSI 540

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPG---------LEHYTCLISAMGRAGRLEDAER 360
           L   C   ++ +  K      V  KL  G         L     LIS   + G ++DA +
Sbjct: 541 LLTSCGRLVSLQLGKQFH--AVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQ 598

Query: 361 IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
           + + M    D   W A+++  A HG A  A ++ +R+
Sbjct: 599 VFLKME-RKDVFSWTAMITGCAHHGLAVEALQLFERM 634



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 134/270 (49%), Gaps = 11/270 (4%)

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+++FD    RDV+ + A+I  +++      +  +F  M    +    + ++  L+ +  
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCS 133

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWN 272
              +  CR +HG ++ +G   +  +    I  Y + G++ DA+RVFDE +L  L+ + WN
Sbjct: 134 TGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWN 193

Query: 273 AMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           +++A Y   G    VL LF  ++ +   AP E ++ +V+ A    G +GE EK+   +  
Sbjct: 194 SIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNA---CGSSGE-EKYGAMVHG 249

Query: 332 RYKLEPGLEH---YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           R  ++ GLE    +  L++  G+ G L+ A ++   +    D   W A+++ +   G+ +
Sbjct: 250 RI-IKAGLEATNLWNSLVTFYGKCGNLQHASQLFERIS-RKDVVSWNAMIAANEQRGEGE 307

Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGV 418
            A  + +R++ + P      V   ++LS V
Sbjct: 308 NALGLFRRMLKVEPPVQPNRVTFLSLLSAV 337



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 144/290 (49%), Gaps = 18/290 (6%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRH 90
           S  +  + + S+   L  + +LF++ P+ +++SW+ALI+A+S   N   +  +F  M+  
Sbjct: 56  SACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGE 115

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGL--SLHSLSLKLSLHDKPFCGSALVHFYSRF 148
                 PN  +LASL K   S       GL   LH  S++          +A +  YSR 
Sbjct: 116 ---GLQPNGFSLASLLKVSCSTGE---IGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRC 169

Query: 149 RSPDNAKKVFDE--IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD-VGSTMYCVS 205
              ++A++VFDE  +   D++ + ++I  +  +   V+ L +F  M S   V  T    +
Sbjct: 170 GVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYA 229

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
             + A       +   ++HG  + +GL+   +  + L+  YGK G +  A ++F E +S 
Sbjct: 230 SVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNS-LVTFYGKCGNLQHASQLF-ERISR 287

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMR-GFAPDEYSFLAVLTAL 313
            + ++WNAM+A   Q+G+    L LF  +L++     P+  +FL++L+A+
Sbjct: 288 KDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAV 337


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 185/564 (32%), Positives = 297/564 (52%), Gaps = 9/564 (1%)

Query: 17  DPRIVHARALKSSQADR--SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           + +I+HA  + S+  DR  ++   LI  Y K   L  +  +F  I + +IVSW+++I+A 
Sbjct: 236 EAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAF 295

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
           + S  + +    ++        PN  T  ++ +   SL  AF +G  +H+  ++    D 
Sbjct: 296 AQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLK-AFQYGKEIHARIVQAGYSDD 354

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               SALV  Y  +   + A+ +F+  RERDVV + +MI G++QN     +LS+F +M  
Sbjct: 355 VCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEV 414

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V         A+ A A + A+ +   +H      GLD++V V T L++ YGK G + +
Sbjct: 415 DGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEE 474

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  VF   +   N + W ++   Y Q G  S  L+L H +E++G  PD   F+A+L +  
Sbjct: 475 AEAVF-LGMKKKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCN 533

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            AG   +   +   M   + + P +EH  C++  +GRAG+LE AE++   M FE   A W
Sbjct: 534 YAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQLINTMKFESSLA-W 592

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
             LL+    H     A++  +++  + P + + YV++++V    G W+   E R+ M  R
Sbjct: 593 MMLLTACKAHNDTARAARAAEKIFQLEPKNATPYVLLSSVFCAAGSWEAAEETRRRMDGR 652

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRM--HERTEDIYTKLAELMEECERLGYVPVWDEM-L 491
            V++  GRS IE+  +VH F+A   +  H    +I+  L +L  E +  GYVP    + L
Sbjct: 653 GVQRLLGRSSIEIGDRVHEFVAASDVLPHHLVGEIFAALEKLGREMQGAGYVPDATAVRL 712

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            +V +  K  A+ YHSE LAL  G++S  P G  LRI KNLR+C DCH + K++S++V R
Sbjct: 713 RDVEEGGKENAVPYHSEMLALGLGIIS-TPAGTPLRITKNLRMCSDCHIATKFVSKLVHR 771

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
            I VRD  R+H F NG C+CGD W
Sbjct: 772 RISVRDGRRHHHFENGVCSCGDYW 795



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 195/417 (46%), Gaps = 16/417 (3%)

Query: 11  PQNTSTDPRIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTA 69
           P+       ++    L+  + D S+  N++   Y +      +L +F+ +   N+V+WT+
Sbjct: 27  PEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTS 86

Query: 70  LISAHSNSPLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
           LISA + +       + + R   LS + P++ T  S+    +        G  +HS  ++
Sbjct: 87  LISAFTFAG-HFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQ 145

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
                     + +V  Y +    + A  VFD I++ +V  +  +I  +AQN   ++ L +
Sbjct: 146 TGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRL 205

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS-GLDRNVIVGTGLIDGYG 247
            + M  + V    Y  +  L A   + A+E+ +++H   + S GLDR+  VGT LI+ YG
Sbjct: 206 LSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYG 265

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G + +A  VF + +   + ++W++M+A +AQ G   + ++L  L+++ G  P+  +F+
Sbjct: 266 KCGALEEAFGVFVQ-IDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFV 324

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA----GRLEDAERIAM 363
            VL A+ +     ++ ++ + +  R  ++ G     CL SA+ +     G +E A  I  
Sbjct: 325 NVLEAVTSL----KAFQYGKEIHARI-VQAGYSDDVCLTSALVKMYCNWGWVETARSI-F 378

Query: 364 AMPFEPDAAVWRALLS-FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419
               E D   W ++++ +S     A   S   +  +D    +   +V   +  +GVG
Sbjct: 379 ESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVG 435


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 180/554 (32%), Positives = 292/554 (52%), Gaps = 11/554 (1%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
           +S   D   Y  LI  Y+    +  + +LF+ IP  ++VSW A+IS ++   N   +L +
Sbjct: 194 RSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 253

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M++    +  P++ T+ ++   CA  S +   G  +HS              ++L+ 
Sbjct: 254 FKEMMK---TNIRPDESTMVTVVSACAQ-SGSIELGRQVHSWIDDHGFGSNLKIVNSLMD 309

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            YS+    + A  +F+ +  +DV+ +  +I G+   +   ++L +F +M  S        
Sbjct: 310 LYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVT 369

Query: 204 VSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           +   L A A L A++  R IH +    +        + T LID Y K G +  A +VF+ 
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNS 429

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            L    S +WNAM+ G+A  G      ++F  +   G  PD+ +F+ +L+A   +G+   
Sbjct: 430 ILHKSLS-SWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDL 488

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
                  M   YK+ P LEHY C+I  +G +G  ++AE +   M  EPD  +W +LL   
Sbjct: 489 GRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKAC 548

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
            I G  ++     + LI I P +   YV+++N+ +  GRW+EVA++R ++ D+ ++K  G
Sbjct: 549 KIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPG 608

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
            S IE+   VH F+ GD+ H R  +IY  L E+    E+ G+VP   E+L  + +  K  
Sbjct: 609 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEG 668

Query: 502 ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
           AL +HSEKLA+AFGL+S  P G  L IVKNLR+CR+CHE+ K IS++ +REI+ RD  R+
Sbjct: 669 ALRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRF 727

Query: 562 HRFLNGSCTCGDLW 575
           H F +G C+C D W
Sbjct: 728 HHFRDGVCSCNDYW 741



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 129/501 (25%), Positives = 225/501 (44%), Gaps = 71/501 (14%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLS------------YSLRLFNHIPSPNIVS 66
           R++HA+ +K+      ++N   TNY+ S LL             Y++ +F  I  PN++ 
Sbjct: 50  RLIHAQMIKTG-----LHN---TNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLI 101

Query: 67  WTALISAH--SNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           W  +   H  S+ P+S L +++ M+   +L  LPN  T   L K+CA  S AF  G  +H
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMI---SLGLLPNSYTFPFLLKSCAK-SKAFKEGQQIH 157

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRF-----------RSP--------------------D 152
              LKL      F  ++L+  Y +            RSP                    +
Sbjct: 158 GHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIE 217

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           +A+K+FDEI  +DVV + AMI G+A+     ++L +F +M  +++      +   + A A
Sbjct: 218 SAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACA 277

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           +  ++E  R +H      G   N+ +   L+D Y K G +  A  +F E L   + I+WN
Sbjct: 278 QSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLF-EGLLYKDVISWN 336

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
            ++ GY         L LF  +   G  P++ + L++L A  + G A +  +WI  + + 
Sbjct: 337 TLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLG-AIDIGRWI-HVYID 394

Query: 333 YKLEPGLEHY---TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
            +L+         T LI    + G +E A ++  ++      + W A++   A+HG+AD 
Sbjct: 395 KRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADA 453

Query: 390 ASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDEVAEV-RKVMKDRRV--RKEGGRSW 444
           A  +  R+  I I P DD  +V + +  S  G  D    + R + +D ++  + E     
Sbjct: 454 AFDIFSRMRKIGIEP-DDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCM 512

Query: 445 IEVKGKVHVFLAGDRMHERTE 465
           I++ G   +F   + M    E
Sbjct: 513 IDLLGHSGLFKEAEEMINNME 533



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 142/329 (43%), Gaps = 55/329 (16%)

Query: 86  SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF- 144
           S+  HP+LS L N +TL SL                +H+  +K  LH+  +  S L+   
Sbjct: 30  SLRNHPSLSLLHNCKTLQSL--------------RLIHAQMIKTGLHNTNYALSKLLELC 75

Query: 145 --YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
                F     A  VF+ I+E +++ +  M  G A +S  V +L ++  M S  +    Y
Sbjct: 76  VISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSY 135

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD-- 260
                L++ A+  A ++ + IHGH +  G D ++ V T LI  Y + G + DAR+VFD  
Sbjct: 136 TFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRS 195

Query: 261 ----------------------------ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
                                       + + V + ++WNAM++GYA+ G+    LELF 
Sbjct: 196 PHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
            +      PDE + + V++A   +G   L  +   WI+     +     L+    L+   
Sbjct: 256 EMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWID----DHGFGSNLKIVNSLMDLY 311

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALL 378
            + G LE A  +   + ++ D   W  L+
Sbjct: 312 SKCGELETACGLFEGLLYK-DVISWNTLI 339


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 301/563 (53%), Gaps = 19/563 (3%)

Query: 19  RIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR L  +    D   YN L+  +  S     + RLF  +P  ++ SW  ++S  S 
Sbjct: 64  RLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSK 123

Query: 77  SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           S     +  +FL+M    ++S+      + S F     +S A                 +
Sbjct: 124 SGAVEEAKVVFLAMPVRNSVSW----NAMVSGFACSGDMSTA-------EEWFRNAPEKE 172

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM- 192
                +A+V  Y    +   A K F+ +  R++V + A++ G+ +NS   D+L +F  M 
Sbjct: 173 DAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMV 232

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R ++V      +S  L   + L+A+   + IH   +   L RN+ VGT L+  Y K G +
Sbjct: 233 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDL 292

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
           S A  +F E +   + +AWNAM++GYAQ GD    + LF  ++  G  P+  +F+ VLTA
Sbjct: 293 SSACILFGE-MHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTA 351

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             + GL     +  E M+  Y +EP ++HY+C++  + RAG+LE A     +MPFEP  +
Sbjct: 352 CIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPS 411

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
            +  LL+   ++   + A     +LI+ +P    AYV +AN+ +   +WD+V+ VR+ MK
Sbjct: 412 AYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMK 471

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           D  V K  G SWIE+KG +H F + DR+H +   I+ KL +L E  + +GYVP  D +LH
Sbjct: 472 DNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLH 531

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V +  K + L  HSEKLA+AFGL+S A  G TLRI KNLR+C DCH + K IS + +RE
Sbjct: 532 DVDETMKVQMLMRHSEKLAIAFGLISTA-HGMTLRIFKNLRVCGDCHNAAKVISMIEDRE 590

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I++RD  R+H F  G C+C D W
Sbjct: 591 IILRDTTRFHHFRGGHCSCDDYW 613



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 32/235 (13%)

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQN-SRLVDSLSVFADMRSSDV---GSTMYC--VSGA 207
           A++ F     +    Y  ++ G+A+   RL D+  +F  + + DV    + + C   SG 
Sbjct: 36  AEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGD 95

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
              A  L A             S   R+V     ++ G  K+G V +A+ VF   + V N
Sbjct: 96  ADGARRLFA-------------SMPVRDVASWNTMVSGLSKSGAVEEAKVVF-LAMPVRN 141

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
           S++WNAM++G+A  GD ST  E F     +    D   + A+++   + G   ++ K+ E
Sbjct: 142 SVSWNAMVSGFACSGDMSTAEEWFRNAPEK---EDAVLWTAMVSGYMDIGNVVKAIKYFE 198

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE----PDAAVWRALL 378
            M VR      L  +  +++   +    +DA R+   M  E    P+A+   ++L
Sbjct: 199 AMPVR-----NLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVL 248


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 180/514 (35%), Positives = 287/514 (55%), Gaps = 13/514 (2%)

Query: 70  LISAHSNSPL------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           LI AH+ SPL      +   F  MLR    + LPN+ T   L K CA+L      GL  H
Sbjct: 99  LIRAHAASPLPSARLRAAAFFPLMLRS---AVLPNKFTFPFLLKACAALPGFPGVGLQAH 155

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSP--DNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           + +LK       +  + L+H YS F      +A+ VFD + +  VV + AMI G+ +   
Sbjct: 156 AAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGL 215

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
             D++ +F +M++S V      V G L AAA+L A+E  R +       G+ ++V +   
Sbjct: 216 SSDAVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLCNA 275

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           LID   K G V  A  VF + +     ++W +++   A +G     + +F  ++  G  P
Sbjct: 276 LIDALAKCGDVDGAVAVF-QGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRP 334

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           D+  F+ VLTA  +AG+  E   + + MK+ Y ++P +EHY C++   GRAG +E A   
Sbjct: 335 DDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEF 394

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
              MP +P+  +WR L++    HG+ ++   + + L++  P  ++ YV+++NV +   RW
Sbjct: 395 IHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVMLSNVYALTQRW 454

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
            E +E+R+ M  R ++K  G S +E+ G+VH F+AGD  H + ++IY  + E+  E + +
Sbjct: 455 KEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIYMMVEEMARELKHV 514

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           G++    E+L ++ + +K  AL +HSEKLA+AF L+   P G  +R+VKNLR+C DCH +
Sbjct: 515 GHISATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLR-TPPGTQVRVVKNLRVCSDCHAA 573

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            K IS V  REI+VRD +R+HRF NGSC+C D W
Sbjct: 574 IKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 607


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 189/592 (31%), Positives = 316/592 (53%), Gaps = 43/592 (7%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +H   LK    DR ++  N L+  Y +   + Y+  +F+ +   ++VSW+ +I + S + 
Sbjct: 146 IHGFVLKKG-LDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNK 204

Query: 79  LSLNIFLSMLRHPTLSFL---PNQRTLAS---LFKTCASLS-----HAFLFG-------- 119
              ++ L ++R   ++F+   P++  + S   LF   A++      HA++          
Sbjct: 205 -EFDMALELIRE--MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMG 261

Query: 120 -------LSLHSLSLKLSLHDKPFCG---------SALVHFYSRFRSPDNAKKVFDEIRE 163
                  L +++    L L  + F G         +A++    R    + A+ +FD  + 
Sbjct: 262 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQN 321

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           RDV+ + AM+  +AQ + +  + ++F  MR+S V  T   +   L   A   A++  + +
Sbjct: 322 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 381

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H +     ++ + I+ T L+D Y K G ++ A R+F E +S  +   WNA++ G+A  G 
Sbjct: 382 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAIS-RDICMWNAIITGFAMHGY 440

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               L++F  +E +G  P++ +F+ +L A  +AGL  E +K  E+M   + L P +EHY 
Sbjct: 441 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG 500

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
           C++  +GRAG L++A  +  +MP +P+  VW AL++   +H    +      +L++I P 
Sbjct: 501 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 560

Query: 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER 463
           +    V+++N+ +   RW + A VRK MK   ++KE G S IEV G VH FL GD+ H +
Sbjct: 561 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQ 620

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
              I   LAE+  +    GYVP    +L N+ + EK  AL YHSEKLA+AFGL+S AP  
Sbjct: 621 IRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAP-S 679

Query: 524 KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             +RIVKNLR+C DCH + K +S++  R I+VRD NR+H F  G C+CGD W
Sbjct: 680 TPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 173/416 (41%), Gaps = 45/416 (10%)

Query: 11  PQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           P    T P       L + +  + I+ ++I  +   + L   L  F    SP+   W  +
Sbjct: 38  PTPLQTPPTSPSQHDLSTLEQTKQIHAHIIKTHFH-HALQIPLNDFPSGLSPS-AQWNFV 95

Query: 71  ISAHS--NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
           I++++  N P  +LN++  + +   + F  +     S+ K C  +S   L G  +H   L
Sbjct: 96  ITSYTKRNQPRNALNVYAQLRK---MDFEVDNFMAPSVLKACGQVSWTQL-GKEIHGFVL 151

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
           K  L    F G+AL+  Y      + A+ VFD++ ERDVV +  MI   ++N     +L 
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN--VIVGTGLIDG 245
           +  +M    V  +   +   +   A+ A M   + +H + + +  + +  V   T L+D 
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAG---------------------------- 277
           Y K G +  AR++F+  L+    ++W AM+AG                            
Sbjct: 272 YAKCGHLGLARQLFN-GLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAM 330

Query: 278 ---YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
              YAQ         LF  +   G  P + + +++L+ LC    A +  KW+     + +
Sbjct: 331 LSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS-LCAVAGALDLGKWVHSYIDKER 389

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           +E      T L+    + G +  A R+ +      D  +W A+++  A+HG  + A
Sbjct: 390 VEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMHGYGEEA 444


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 296/563 (52%), Gaps = 11/563 (1%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           RI +   L   ++ R + N L+  Y K   L  +  +F+  P  N+ SWT +++A +++ 
Sbjct: 78  RIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNG 137

Query: 79  LSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             ++  L++L    L  + PN  T   L    A+LS     G +LH            F 
Sbjct: 138 HYMDA-LNLLEIMDLEGISPNSITFIELLGAVAALSW-LDRGRALHRRIACCGFLADIFV 195

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + L++ Y++ RS  +A  VF+ +  R V+ + A++  +A N    D+L VF  M    V
Sbjct: 196 ANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGV 255

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             T       +   A++A     R +HG  + +  + NV VG  LI+ YGK     +AR+
Sbjct: 256 EPTEVTFVTVVDVCADIAVFGIGREVHG-VIDARSEANVCVGNALINMYGKCASPDEARK 314

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE-----MRGFAPDEYSFLAVLTA 312
           VFD  +   + I WN+M+A Y Q G     LE++  ++     + G   D+ +F+ VL A
Sbjct: 315 VFDA-MQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFA 373

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  +S K    M   Y  +P      CLI  +GRAG L++AE    +MP+ PD  
Sbjct: 374 CSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHT 433

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W  LL     H   + A++   R++ + P D  +YV ++N+ +   RWD++A +RK+M 
Sbjct: 434 IWTILLGACITHADVERAARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRKLMD 493

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            R V K  G+S IE+ G +H F+AGD  H R  +IY +L  +       GYVP    +LH
Sbjct: 494 QRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKAVLH 553

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           N     K +   +HSE+LA+AFG++S +P G  LRI+KNLR+C DCH + K IS+   R+
Sbjct: 554 NAAREAKEKMCCFHSERLAIAFGMIS-SPGGTELRIMKNLRVCPDCHSATKIISKFSGRK 612

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+H F NGSC+C D W
Sbjct: 613 IIVRDANRFHEFRNGSCSCEDYW 635



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 15/184 (8%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           LR     AA+ + + IH H V+ G   +  +   L++ YGK G +  A+ VF       N
Sbjct: 64  LRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHIT-PRRN 122

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
             +W  M+A +A  G     L L  ++++ G +P+  +F+ +L A+  A L+     W++
Sbjct: 123 VFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAV--AALS-----WLD 175

Query: 328 RMKVRYK------LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
           R +  ++          +    CLI+   +   L DA  +  ++      A W AL++  
Sbjct: 176 RGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIA-WTALVAAY 234

Query: 382 AIHG 385
           A++G
Sbjct: 235 ALNG 238


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 179/568 (31%), Positives = 296/568 (52%), Gaps = 9/568 (1%)

Query: 14  TSTDPRI---VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
           +S+ P+    +HA  L++  +++ S+   L+ N      + Y+ ++F+ +  P I  W  
Sbjct: 20  SSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNT 79

Query: 70  LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
           L   +  + L     L   +   L   P++ T   + K  + L   F  G +LH+  +K 
Sbjct: 80  LFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGD-FSCGFALHAHVVKY 138

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
                    + LV  Y +F    +A+ +F+ ++ +D+V + A +    Q      +L  F
Sbjct: 139 GFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYF 198

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
             M +  V    + V   L A  +L ++E    I+  A    +D N+IV    +D + K 
Sbjct: 199 NKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKC 258

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G    AR +F+E +   N ++W+ M+ GYA  GD    L LF  ++  G  P+  +FL V
Sbjct: 259 GNTEAARVLFEE-MKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGV 317

Query: 310 LTALCNAGLAGESEKWIERM--KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           L+A  +AGL  E +++   M       LEP  EHY C++  +GR+G LE+A      MP 
Sbjct: 318 LSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPV 377

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           EPD  +W ALL   A+H    +  K+   L++  P   S +V+++N+ +  G+WD V +V
Sbjct: 378 EPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKV 437

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           R  M+    +K    S +E +GK+H F  GD+ H +++ IY KL E++++  ++GYVP  
Sbjct: 438 RSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDT 497

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
             + H+V   EK  +L +HSEKLA+AFGL+ G P G  +R++KNLR C DCH   K++S 
Sbjct: 498 CSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRP-GHPIRVMKNLRTCDDCHAFSKFVSS 556

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +   EI++RD NR+H F NG C+C + W
Sbjct: 557 LTSTEIIMRDKNRFHHFRNGVCSCKEFW 584



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 28/250 (11%)

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           T   +S  LRA++  +  +Q + IH   + +G      + T L++     G +  AR+VF
Sbjct: 9   TKQMLSELLRASS--SKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVF 66

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           DE +       WN +  GY +       L L+  +   G  PDE+++  V+ A+   G  
Sbjct: 67  DE-MHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLG-- 123

Query: 320 GESEKWIERMKVRYKLEPGLEHY---------TCLISAMGRAGRLEDAERIAMAMPFEPD 370
                        + L   +  Y         T L+    + G L  AE +  +M  + D
Sbjct: 124 --------DFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVK-D 174

Query: 371 AAVWRALLSFSAIHGKADMASK-MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
              W A L+     G + +A +   K   D   +D      V ++LS  G+   + E+ +
Sbjct: 175 LVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDS---FTVVSMLSACGQLGSL-EIGE 230

Query: 430 VMKDRRVRKE 439
            + DR  ++E
Sbjct: 231 EIYDRARKEE 240


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 185/537 (34%), Positives = 291/537 (54%), Gaps = 17/537 (3%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALI---SAHSNSPLS------LNIFLSMLRHPTLSFLPNQ 99
           L+Y+ ++F+ +P P    W   +    A S++P S      + +F+ ML        P+ 
Sbjct: 77  LAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEE---GVAPDT 133

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
            T  SL K CA+ + A   G   H+L++KL   D  +    L++ Y+       A+ +F 
Sbjct: 134 YTFVSLLKACAA-ARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFG 192

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
                 VV Y AMI    ++SR  ++L +F +M+   +  T   V   L A A L A+E 
Sbjct: 193 GTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALEL 252

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            R +H +    GL   V V T LID Y K G + DA  VF + +   +  AW+ M+  YA
Sbjct: 253 GRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVF-QGMESKDRQAWSVMIVAYA 311

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
             G     + LF  ++  G  PD+ +FL VL A  ++GL  E  ++ + MK  + + PG+
Sbjct: 312 NHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMK-DHGIVPGI 370

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           +HY C+   + R+G+LE A +    +P  P   +WR LLS    HG  ++  ++ +R++ 
Sbjct: 371 KHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERILK 430

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDR 459
           ++      YVI +N+ +  G W+E+  VRK+M ++ V K  G S IE+   VH F AGD 
Sbjct: 431 LDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTVHEFFAGDG 490

Query: 460 MHERTEDIYTKLAELMEECERLGYVPVWDEMLH-NVGDREKREALWYHSEKLALAFGLVS 518
            H ++++    + E++++ + +GYVP    + H  +G+ EK  +L YHSEKLA+AFGL++
Sbjct: 491 RHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLN 550

Query: 519 GAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            AP G TLR+VKNLR+C DCH   K +S V  R I++RD+NR+H F  G C+CGD W
Sbjct: 551 TAP-GATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGICSCGDYW 606



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 154/387 (39%), Gaps = 35/387 (9%)

Query: 61  SPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN---QRTLASLFKTCASLSHAFL 117
           +P   +   L+ A   SP          +HP LS LP+    RTLA L         A  
Sbjct: 4   APLTATPAPLLPAKPKSP-------PPQQHPVLSHLPHCTSLRTLAQLHAAAVKAGLAAH 56

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI-RERDVVCYGAMIVGF 176
             L    ++  L+L   P  G A + +         A++VFD +    D V Y  ++ G+
Sbjct: 57  PAL----VTRLLTLCTGPDAGPAHLAY---------ARQVFDRVPHPADAVWYNTLLRGY 103

Query: 177 AQNSRLVDS-----LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           A++S    S     + VF  M    V    Y     L+A A   A E+ R  H  AV  G
Sbjct: 104 ARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLG 163

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
              +  V   LI+ Y + G    AR +F         +++NAM+A   +       L LF
Sbjct: 164 AADHDYVRPTLINMYAECGDARAARVMFGGTDGGC-VVSYNAMIAAAVRSSRPGEALVLF 222

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             ++ +G  P   + ++VL+A    G A E  +W+     +  L   ++  T LI    +
Sbjct: 223 REMQGKGLKPTSVTVISVLSACALLG-ALELGRWVHDYVRKIGLGSLVKVSTALIDMYAK 281

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYV 409
            G LEDA  +   M  + D   W  ++   A HG    A  + + +    + P DD  ++
Sbjct: 282 CGSLEDAIDVFQGMESK-DRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKP-DDITFL 339

Query: 410 IVANVLSGVGRWDEVAEVRKVMKDRRV 436
            V    S  G   E  +    MKD  +
Sbjct: 340 GVLYACSHSGLVSEGLQYFDDMKDHGI 366


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 192/582 (32%), Positives = 325/582 (55%), Gaps = 23/582 (3%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSP 62
           LN    P+    + R++H   ++  + DR +   N LI  Y K   L  ++ +F  +   
Sbjct: 310 LNACSGPRGLE-EGRMIHG-FMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHR 367

Query: 63  NIVSWTALISAH---SNSPLSLNIF----LSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115
           +++SW  +I+AH   S  P +L++     L  ++   +SF+       +    CA+ S A
Sbjct: 368 DVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFV-------NALPLCAA-SEA 419

Query: 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG 175
              G  +HS  ++  +       +A++  Y   +S D+A +VF  ++ RD V + AMI  
Sbjct: 420 LAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNAMITA 479

Query: 176 FAQNSRLV-DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           +A   RL  ++L +F  M+       +     AL A A  A++ + +++H     +GL+ 
Sbjct: 480 YAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLES 539

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           N+ V   +++ Y K+G +  AR++F + + + + I+WN M++ +AQ G    VL  F  +
Sbjct: 540 NMTVANAVLNMYAKSGSLVLARKMFGK-MPLPDVISWNGMISAFAQHGHADQVLRFFRRM 598

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
              G  P++ +F++V++A  + GL  +  + ++  +     + P  EHY C++  + RAG
Sbjct: 599 NHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAG 658

Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           +L+ AE+   A P +PD  +   +L  S +H   + A K  + L+++ P   +AYV+++N
Sbjct: 659 KLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSN 718

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           +   VG+ DE A++R++M ++ +RKE   S I VK +VH F  GD  + RT +I  +L  
Sbjct: 719 LYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEELER 778

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L  E  + GY P    MLH+VGD +K+  L YHSEKLA+AFGL+S AP G +LRI+KNLR
Sbjct: 779 LSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAP-GTSLRIIKNLR 837

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +C DCH + K+IS++  REIVVRD +R+H F NG+C+CGD W
Sbjct: 838 VCGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 162/379 (42%), Gaps = 27/379 (7%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS--- 75
           VHAR  KS+  DR  +  + L+  Y     L  +   F+ +P  + ++W  LI AH    
Sbjct: 20  VHARICKSAM-DRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLIRAHGQIG 78

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           +S  +L++F SM         P  R   ++   C++       G  +H +    ++    
Sbjct: 79  DSEQALHLFRSM---QLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDH 135

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           +  + L+H Y +  S ++A+KVFD IR + VV + AMI  +AQ      ++ VF  M   
Sbjct: 136 YVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLE 195

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVI--------HGHAVVSGLDRNVIVGTGLIDGYG 247
            V +      G L A ++L  +E  +++        H H   S         T L++ YG
Sbjct: 196 GVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSF------ATALVNFYG 249

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
             G +  A R F  +   L  I   AM+  Y Q+      LELF ++ + G   D  + +
Sbjct: 250 SCGDLEQAFRAFSRHR--LELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACM 307

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           AVL A C+     E  + I       + +  +     LI+  G+ G LE+A  +  +M  
Sbjct: 308 AVLNA-CSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQH 366

Query: 368 EPDAAVWRALLSFSAIHGK 386
             D   W  +++    H +
Sbjct: 367 R-DVISWNTIIAAHGQHSQ 384



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 115/254 (45%), Gaps = 11/254 (4%)

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
           S +   G  +H+   K ++   PF G  LV  Y    S  +AK  FD +  +D + +  +
Sbjct: 11  SRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARL 70

Query: 173 IVGFAQNSRLVDSLSVFADMR---SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
           I    Q      +L +F  M+    + V      V GA  A  EL  +E+ R IHG    
Sbjct: 71  IRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPEL--LEEGRRIHGVLRG 128

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
           + ++ +  V T L+  YGK   V DAR+VFD  +     + WNAM+  YAQQ      ++
Sbjct: 129 TAMESDHYVSTTLLHMYGKCSSVEDARKVFD-GIRHKRVVEWNAMITAYAQQDHHEQAIQ 187

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH---YTCLI 346
           +F+ + + G   +  +F+ VL A C+     E  K + ++ V  +    L      T L+
Sbjct: 188 VFYAMLLEGVKAERITFIGVLDA-CSKLKDLEVAKLV-KLCVEEREHDHLHDSSFATALV 245

Query: 347 SAMGRAGRLEDAER 360
           +  G  G LE A R
Sbjct: 246 NFYGSCGDLEQAFR 259



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 27/180 (15%)

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           D L V AD RS D+G                      + +H     S +DR   +G  L+
Sbjct: 3   DLLDVVADSRSLDLG----------------------KEVHARICKSAMDRGPFMGDLLV 40

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
             Y   G + DA+  FD  + V +++ W  ++  + Q GD    L LF  +++ G AP  
Sbjct: 41  RMYVDCGSLIDAKACFD-RMPVQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVN 99

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERI 361
            +F+AVL A        E  + I  +     +E   +HY  T L+   G+   +EDA ++
Sbjct: 100 RNFVAVLGACSADPELLEEGRRIHGVLRGTAMES--DHYVSTTLLHMYGKCSSVEDARKV 157


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 181/544 (33%), Positives = 284/544 (52%), Gaps = 42/544 (7%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D + +N +I+ +S++ ++  +  LF  +P  N VSW A+IS +  S              
Sbjct: 98  DTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVES-------------- 143

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                     LA      A +     +                    +A++  + +F   
Sbjct: 144 ------GDLDLAKQLFEVAPVRSVVAW--------------------TAMITGFMKFGKI 177

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           + A+K F+E+  +++V + AMI G+ +N +  + L +F  M  S        +S  L   
Sbjct: 178 ELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGC 237

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           + L+A++  + +H     S +  N+  GT L+  Y K G + DA ++F   +   + + W
Sbjct: 238 SNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLF-LVMPQKDVVTW 296

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           NAM++GYAQ G     L LF  +   G  PD  +F+AVL+A  +AG      ++   M  
Sbjct: 297 NAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVR 356

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y +E   +HYTC++  +GR G+L +A  +   MPF+P +A++  LL    IH   ++A 
Sbjct: 357 DYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAE 416

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
              K L++++P   + YV +ANV + + RWD VA VR+ MKD +V K  G SWIEVK  V
Sbjct: 417 FAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVV 476

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F +GDR+H     I+ KL EL  +    GYVP  +  LH+VG+ +K++ L  HSEKLA
Sbjct: 477 HEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLA 536

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +A+GL+   P G  +R+ KNLR+C DCH + KYIS +  R I+VRD  R+H F  G C+C
Sbjct: 537 IAYGLIR-MPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSC 595

Query: 572 GDLW 575
           GD W
Sbjct: 596 GDYW 599



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 88/182 (48%), Gaps = 14/182 (7%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFA-QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
           ++A +VF+ +  +  V + +M+ G++ +  ++  +  +F  +   D+ S    ++  L  
Sbjct: 22  NSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHN 81

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
           A     +E  R+      V    ++      +I G+ + G++  AR +F   + V NS++
Sbjct: 82  AD----VESARLFFDQMPV----KDTASWNTMISGFSQNGMMDQARELF-LVMPVRNSVS 132

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WNAM++GY + GD     +LF +  +R       ++ A++T     G    +EK+ E M 
Sbjct: 133 WNAMISGYVESGDLDLAKQLFEVAPVRSVV----AWTAMITGFMKFGKIELAEKYFEEMP 188

Query: 331 VR 332
           ++
Sbjct: 189 MK 190


>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
 gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
          Length = 604

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 179/560 (31%), Positives = 304/560 (54%), Gaps = 11/560 (1%)

Query: 19  RIVHARALKSSQAD-RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HAR + +   D   + N+++  Y K   +    R F+ +   NIVSW A+ISA++ +
Sbjct: 53  RRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSGMKRRNIVSWNAVISAYAQN 112

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S +  +  LR       P+  T  S+    A       +   +H L+L++     P  
Sbjct: 113 DRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAG-PELHRWAKLVHDLALEVGFGSHPVV 171

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL++ YS+  S D A++VFDE+  +DVV +  MI  +AQ     ++L +F  M +  +
Sbjct: 172 ATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFHRMDAEGI 231

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            + +      + A   +A +   R IH   + +GL+ N ++GT L++ YGK G +++A++
Sbjct: 232 QANVITFVTVVHACVLVARITDARTIHCRIIEAGLESNTVLGTALLNMYGKCGGLAEAKK 291

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD+ L+  + + W+A++  YA+ G     L+LF L++  G  P++ +F+ VL A C+ G
Sbjct: 292 IFDK-LAERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLEACCHGG 350

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              E       +   ++L P   H  C++  +GRAG+LE+AE     MP + +A  W   
Sbjct: 351 FVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIARMPVKEEAITWSIF 410

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L     +G  +   +  +++ +  P+  + Y+ +A++ +  G  +E   V ++M+ R  +
Sbjct: 411 LGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLASMYTDAGMPEEAEAVARLMESRCPK 470

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           KE G S I V+G+VH F    + H + ++IY+ L EL      LGYVP    +L  +G  
Sbjct: 471 KEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLDELHARALELGYVPDTRPLL--LGSV 528

Query: 498 EKREALWYHSEKLALAFGLVS-GAPRGKTLRIVKNLRICRDCHESFKYISRVVE-REIVV 555
           E++     HSE+LALAFG +S    R   + I+KNLR+CRDCHE  K++SR +E REI+V
Sbjct: 529 ERK----LHSERLALAFGAMSVPGKRNSPIHIIKNLRVCRDCHEFTKFVSRTMEGREIIV 584

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD +R+H F +G C+CGD W
Sbjct: 585 RDTSRFHLFKDGVCSCGDYW 604



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 11/279 (3%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  LH+  +     D  F  + ++  Y +    ++  + F  ++ R++V + A+I  +AQ
Sbjct: 52  GRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSGMKRRNIVSWNAVISAYAQ 111

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N R  D++ +F  M    +  +    +  L A A        +++H  A+  G   + +V
Sbjct: 112 NDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELHRWAKLVHDLALEVGFGSHPVV 171

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            T L++ Y K G +  AR+VFDE L++ + ++W+ M+A YAQ G  +  LE+FH ++  G
Sbjct: 172 ATALLNMYSKVGSIDRARQVFDE-LAIKDVVSWSNMIAAYAQTGHGTEALEMFHRMDAEG 230

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM----GRAGR 354
              +  +F+ V+ A        ++     R+     +E GLE  T L +A+    G+ G 
Sbjct: 231 IQANVITFVTVVHACVLVARITDARTIHCRI-----IEAGLESNTVLGTALLNMYGKCGG 285

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           L +A++I   +  E D  VW A+L   A HG   +A K+
Sbjct: 286 LAEAKKIFDKLA-ERDVVVWSAILEAYARHGHPRVALKL 323


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 183/560 (32%), Positives = 310/560 (55%), Gaps = 14/560 (2%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SN 76
           ++H   LK    +D  + N LI  YSK   L  +  +F+ +   ++VSW ++I+A+  +N
Sbjct: 243 LIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNN 302

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            P +   F   ++   +   P+  T+ SL    + LS   +   S+    ++    DK  
Sbjct: 303 DPSTALRFFKGMQLGGIR--PDLLTVVSLTSIFSQLSDQRI-SRSILGFVIRREWLDKDV 359

Query: 137 C-GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN---SRLVDSLSVFADM 192
             G+ALV+ Y++    + A  VFD++  +D + +  ++ G+ QN   S  +D+ ++  + 
Sbjct: 360 VIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEEC 419

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R +      +     + A + + A++Q   IH   + + L  +V V T LID YGK G +
Sbjct: 420 RDTIPNQGTWV--SIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRL 477

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DA  +F E +    S+ WNA++A     G     L+LF  +       D  +F+++L+A
Sbjct: 478 EDAMSLFYE-IPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSA 536

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++GL  E +K  + M+  Y ++P L+HY C++  +GRAG LE A  +   MP +PDA+
Sbjct: 537 CSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDAS 596

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W ALLS   I+G A++ +    RL++++  +   YV+++N+ +   +W+ V +VR + +
Sbjct: 597 IWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLAR 656

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           DR +RK  G S + V  K  VF  G++ H +  +IY +L  L  + + LGYVP +  +  
Sbjct: 657 DRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQ 716

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + EK + L  HSE+LA+AFG++S  PR   +RI KNLR+C DCH + KYISR+ ERE
Sbjct: 717 DIEEDEKEQILNSHSERLAIAFGIISTPPRSP-IRIFKNLRVCGDCHNATKYISRISERE 775

Query: 553 IVVRDVNRYHRFLNGSCTCG 572
           IVVRD NR+H F +G C+C 
Sbjct: 776 IVVRDSNRFHHFKDGICSCA 795



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 160/360 (44%), Gaps = 14/360 (3%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH------SNSPLSLNIFLSMLRH 90
             LI  Y     +S S   F++I   NI SW ++ISA+        +   +N   SM   
Sbjct: 58  TKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGG 117

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
             L   P+  T   + K C SL      G  +H    K+   D  F  ++LVH YSR+  
Sbjct: 118 GHLR--PDFYTFPPILKACVSLVD----GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGV 171

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            D A KVF ++  +DV  + AMI GF QN     +L V   M+   V      V+  L  
Sbjct: 172 LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPV 231

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A+   +    +IH H +  GLD +V V   LI+ Y K G + DA+ VFD+ + V + ++
Sbjct: 232 CAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQ-MEVRDLVS 290

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WN+++A Y Q  D ST L  F  +++ G  PD  + +++ +          S   +  + 
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            R  L+  +     L++   + G +  A  +   +P   D   W  L++    +G A  A
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP-RKDTISWNTLVTGYTQNGLASEA 409


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 180/561 (32%), Positives = 304/561 (54%), Gaps = 7/561 (1%)

Query: 19  RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R++H + +KS S     I + L+  Y +      + +LF+ +P  ++VSW +LIS +S  
Sbjct: 51  RLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGR 110

Query: 78  PLSLNIF--LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
                 F  LS +    + F PN+ T  S+   C     +   G  +H L +K  + ++ 
Sbjct: 111 GYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACV-YGGSKEEGRCIHGLVMKFGVLEEV 169

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              +A +++Y +     ++ K+F+++  +++V +  MIV   QN      L+ F   R  
Sbjct: 170 KVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRV 229

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                       LR+  ++  +   + IHG  +  G   N  + T L+D Y K G + D+
Sbjct: 230 GHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDS 289

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             VF E ++  +S+AW AM+A YA  G     ++ F L+   G +PD  +F  +L A  +
Sbjct: 290 STVFHE-ITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSH 348

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           +GL  E + + E M  RY+++P L+HY+C++  +GR+G L+DA  +   MP EP + VW 
Sbjct: 349 SGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWG 408

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ALL    ++    + +K  +RL ++ P D   YV+++N+ S  G W + + +R +MK + 
Sbjct: 409 ALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKG 468

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE-RLGYVPVWDEMLHNV 494
           + +  G S+IE   K+H F+ GD  H  +E I  KL E+ ++ +  +GY    + +LH+V
Sbjct: 469 LVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDV 528

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
           G+  K E +  HSEK+A+AFGL+  +P  + + I KNLRIC DCHE+ K IS + +R I+
Sbjct: 529 GEDVKEEMINQHSEKIAMAFGLLVVSPM-EPIIIRKNLRICGDCHETAKAISLIEKRRII 587

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           +RD  R+H FL+GSC+C D W
Sbjct: 588 IRDSKRFHHFLDGSCSCSDYW 608



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 100/202 (49%), Gaps = 8/202 (3%)

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           +SS V S    VS  + A     ++E CR++H   V S   R+  +G  L+  Y + G  
Sbjct: 23  QSSFVHSLDANVSSLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHD 82

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH--LLEMRGFAPDEYSFLAVL 310
             A ++FDE +   + ++WN++++GY+ +G      E+    ++   GF P+E +FL+++
Sbjct: 83  VCAEKLFDE-MPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMI 141

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A C  G + E  + I  + +++ +   ++     I+  G+ G L  + ++   +  + +
Sbjct: 142 SA-CVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIK-N 199

Query: 371 AAVWRALLSFSAIHGKADMASK 392
              W  ++    IH +  +A K
Sbjct: 200 LVSWNTMI---VIHLQNGLAEK 218


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 183/562 (32%), Positives = 297/562 (52%), Gaps = 11/562 (1%)

Query: 19   RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHS 75
            RI+H   + S   D  I  N L++ Y K   +S S R+   +P  ++V+W ALI   A +
Sbjct: 483  RILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAEN 542

Query: 76   NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              P         LR   +S   N  T+ S+   C         G  LH+  +        
Sbjct: 543  EDPDKALAAFQTLRVEGVS--ANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDE 600

Query: 136  FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
               ++L+  Y++     +++ +F+ +  R ++ + A++   A +    + L + + MRS 
Sbjct: 601  HVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSF 660

Query: 196  DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
             +    +  S  L AAA+LA +E+ + +HG AV  G + +  +     D Y K G + + 
Sbjct: 661  GLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEV 720

Query: 256  RRVFDENLSVLNSI-AWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTAL 313
             ++     SV  S+ +WN +++   + G    V E FH +LEM G  P   +F+++LTA 
Sbjct: 721  VKMLPP--SVNRSLPSWNILISALGRHGYFEEVCETFHEMLEM-GIKPGHVTFVSLLTAC 777

Query: 314  CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
             + GL  +   + + +   + LEP +EH  C+I  +GR+GRL +AE     MP +P+  V
Sbjct: 778  SHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLV 837

Query: 374  WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
            WR+LL+   IH   D   K  + L  + P DDS +V+ +N+ +  GRW++V  VRK M  
Sbjct: 838  WRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGF 897

Query: 434  RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
            + ++K+   SW+++K KV  F  GDR H +T +IY KL ++ +  +  GYV    + L +
Sbjct: 898  KNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQD 957

Query: 494  VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
              + +K   LW HSE+LALA+ L+S  P G T+RI KNLRIC DCH  +K++SRV+ R I
Sbjct: 958  TDEEQKEHNLWNHSERLALAYALMS-TPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRI 1016

Query: 554  VVRDVNRYHRFLNGSCTCGDLW 575
            V+RD  R+H F +G C+C D W
Sbjct: 1017 VLRDQYRFHHFESGLCSCKDYW 1038



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 178/384 (46%), Gaps = 12/384 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +  + +KS  ++  ++ N+LI+ +     + Y+  +FN I   + +SW ++++A++ +
Sbjct: 281 RQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQN 340

Query: 78  ---PLSLNIFLSMLR-HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
                S  IF  M R H  +    N  T+++L      + H   +G  +H L +K+    
Sbjct: 341 GHIEESSRIFNLMRRFHDEV----NSTTVSTLLSVLGDVDHQ-KWGRGIHGLVVKMGFDS 395

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + L+  Y+     + A  VF ++  +D++ + +++  F  + R +D+L +   M 
Sbjct: 396 VVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMI 455

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
            +         + AL A       ++ R++HG  VVSGL  N I+G  L+  YGK G +S
Sbjct: 456 RTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMS 515

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            +RRV  + +   + +AWNA++ GYA+  D    L  F  L + G + +  + ++VL+A 
Sbjct: 516 TSRRVLLQ-MPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSAC 574

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G   E  K +    V    E        LI+   + G L  ++ +   +        
Sbjct: 575 LVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRSIIT 633

Query: 374 WRALLSFSAIHGKADMASKMGKRL 397
           W A+L+ +A HG  +   K+  ++
Sbjct: 634 WNAILAANAHHGHGEEVLKLVSKM 657



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 170/372 (45%), Gaps = 18/372 (4%)

Query: 16  TDPRIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T  R +HA  +K       ++ N LI  Y+K   +  +  LF+ +P  N VSW  ++S  
Sbjct: 75  TTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGI 134

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
               L L       +   L   P+   +ASL   C      F  G+ +H    K  L   
Sbjct: 135 VRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSD 194

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +  +A++H Y  +     ++KVF+E+ +R+VV + +++VG++      + + ++  MR 
Sbjct: 195 VYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRG 254

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V      +S  + +   L      R I G  + SGL+  + V   LI  +G  G V  
Sbjct: 255 EGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDY 314

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F++ +S  ++I+WN+++A YAQ G       +F+L  MR F  DE +   V T L 
Sbjct: 315 ANYIFNQ-ISERDTISWNSIVAAYAQNGHIEESSRIFNL--MRRF-HDEVNSTTVSTLLS 370

Query: 315 NAGLAGESEKW---IERMKVRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAMPF 367
             G   + +KW   I  + V+     G +   C+ + + R    AGR E+A+ +   MP 
Sbjct: 371 VLGDV-DHQKWGRGIHGLVVKM----GFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMP- 424

Query: 368 EPDAAVWRALLS 379
             D   W +L++
Sbjct: 425 TKDLISWNSLMA 436


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 302/562 (53%), Gaps = 18/562 (3%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR L     ++ +    N+I  Y +   L  +  LF+ +P  N+V+WTA++S ++ 
Sbjct: 163 RVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYAR 222

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
                N  + + R      +P +R   S        +H+   G    + SL  ++  KP 
Sbjct: 223 -----NGKVDVARK-LFEVMP-ERNEVSWTAMLLGYTHS---GRMREASSLFDAMPVKPV 272

Query: 137 --CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
             C   ++ F       D A++VF  ++ERD   + AMI  + +    +++L +F  M+ 
Sbjct: 273 VVCNEMIMGF-GLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQR 331

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +      +   L     LA+++  + +H   V S  D+++ V + LI  Y K G +  
Sbjct: 332 EGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVR 391

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A++VF+    + + + WN+M+ GY+Q G     L +FH +   G  PD+ +F+ VL+A  
Sbjct: 392 AKQVFN-RFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACS 450

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            +G   E  +  E MK +Y++EPG+EHY CL+  +GRA ++ +A ++   MP EPDA VW
Sbjct: 451 YSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVW 510

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL     H K D+A    ++L  + P +   YV+++N+ +  GRW +V  +R+ +K R
Sbjct: 511 GALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKAR 570

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECER-LGYVPVWDEMLHN 493
            V K  G SWIEV+ KVH+F  GD      + I  K+ E +    R  GY P    +LH+
Sbjct: 571 SVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHD 630

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + EK  +L YHSEKLA+A+GL+   P G  +R++KNLR+C DCH + K I++V  REI
Sbjct: 631 VDEEEKTHSLGYHSEKLAVAYGLLK-VPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREI 689

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD NR+H F +G C+C D W
Sbjct: 690 ILRDANRFHHFKDGHCSCKDYW 711



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 192/416 (46%), Gaps = 39/416 (9%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNI 83
           K  Q +   +N LI+ + K+ +LS + R+F+ +P  N+VSWT+++  +    +   +  +
Sbjct: 80  KMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERL 139

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M     +S+      L  L +         LF +      + ++     +C    + 
Sbjct: 140 FWHMPHKNVVSW---TVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRL- 195

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTM- 201
                   D A+ +FDE+ +R+VV + AM+ G+A+N ++  +  +F  M   ++V  T  
Sbjct: 196 --------DEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAM 247

Query: 202 ---YCVSGALRAAAEL-AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
              Y  SG +R A+ L  AM                + V+V   +I G+G  G V  ARR
Sbjct: 248 LLGYTHSGRMREASSLFDAMPV--------------KPVVVCNEMIMGFGLNGEVDKARR 293

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF + +   ++  W+AM+  Y ++G +   L LF  ++  G A +  S ++VL+ +C + 
Sbjct: 294 VF-KGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLS-VCVSL 351

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
            + +  K +    VR + +  L   + LI+   + G L  A+++    P + D  +W ++
Sbjct: 352 ASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSM 410

Query: 378 LSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           ++  + HG  + A  +   +     P DD  ++ V +  S  G+  E  E+ + MK
Sbjct: 411 ITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMK 466



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 133/298 (44%), Gaps = 27/298 (9%)

Query: 145 YSRFRSPDNAKKVFDE--IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
           Y+R    D+A+KVFDE  +  R V  + AM+  + +  +  ++L +F  M   +  S   
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNG 91

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
            +SG ++       + + R +      +  DRNV+  T ++ GY + G V++A R+F  +
Sbjct: 92  LISGHIKNGM----LSEARRVFD----TMPDRNVVSWTSMVRGYVRNGDVAEAERLF-WH 142

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
           +   N ++W  M+ G  Q+G      +LF ++  +    D  +   ++   C  G   E+
Sbjct: 143 MPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEK----DVVAVTNMIGGYCEEGRLDEA 198

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
               + M  R      +  +T ++S   R G+++ A ++   MP E +   W A+L    
Sbjct: 199 RALFDEMPKR-----NVVTWTAMVSGYARNGKVDVARKLFEVMP-ERNEVSWTAMLLGYT 252

Query: 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
             G+   AS     L D  P      V+   ++ G G   EV + R+V K  + R  G
Sbjct: 253 HSGRMREASS----LFDAMPV--KPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNG 304


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 178/546 (32%), Positives = 288/546 (52%), Gaps = 21/546 (3%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSL-------NIFLSMLR 89
            +L++ YSK   L  S++ F  +   N VSW A+I+A +     L        +FL  +R
Sbjct: 175 TSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIR 234

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
             +++++    TL S +   + L  A      +H   L+          + +++ Y +  
Sbjct: 235 ACSVTYI----TLMSAYDQPSQLKSARY----IHDCILRTGFDQDVV--NVILNMYGKCG 284

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
              +A+ +F  + + DV+ +  MI  ++Q+    ++L  +  M+   V    Y     + 
Sbjct: 285 CLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVID 344

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A A L  ME  + +H            +  + L++ YGK GI+  AR +FD+  +   S+
Sbjct: 345 ACATLGDMEVGKQVHRRLGDRAFQVTELANS-LVNMYGKCGILDVARSIFDK--TAKGSV 401

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            WNAM+  YAQ   +    ELF L+ + G  P   +F++VL+A  NAGL  E+  +   M
Sbjct: 402 TWNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCM 461

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
           +  + + PG  HY C++ ++G+AGRL DAE +   MPFEPD   W + L+    HG    
Sbjct: 462 QQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKR 521

Query: 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG 449
                K  I I+P   + YV +A + +  G + E + +RK+M DR +RK  GRS I++  
Sbjct: 522 GKFAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGT 581

Query: 450 KVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEK 509
            V+ F AGD+ + R+++I+ +L  L +E +R GY P    + H+V   +K   L+ HSE+
Sbjct: 582 SVYEFTAGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSER 641

Query: 510 LALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSC 569
           LA+AFG++S   +G  LRI+KNLR+C DCH   K  S++  REI+VRD NR+H F NGSC
Sbjct: 642 LAIAFGIIS-TSQGTPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSC 700

Query: 570 TCGDLW 575
           +C D W
Sbjct: 701 SCKDFW 706



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 194/422 (45%), Gaps = 27/422 (6%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSM 87
           +D  + N+L+  Y K   L  +  +F   P+ N+ SWT LI+    H  S  +L +F  M
Sbjct: 67  SDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEM 126

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           L+       P+  +  +    C++       G +LH+L  +    D     ++LV  YS+
Sbjct: 127 LKQ---GIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSK 183

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             S + + K F+ + E + V + AMI  FA++ R +++L     M    + +        
Sbjct: 184 CGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITL 243

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           + A  + + ++  R IH   + +G D++V+    +++ YGK G + DA  +F +++S  +
Sbjct: 244 MSAYDQPSQLKSARYIHDCILRTGFDQDVV--NVILNMYGKCGCLQDAEAMF-KSMSQPD 300

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            IAWN M+A Y+Q G  S  L  + L++  G  PD+Y++++V+ A    G     ++   
Sbjct: 301 VIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHR 360

Query: 328 RMKVR-YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA---AVWRALLSFSAI 383
           R+  R +++    E    L++  G+ G L+ A  I     F+  A     W A++   A 
Sbjct: 361 RLGDRAFQVT---ELANSLVNMYGKCGILDVARSI-----FDKTAKGSVTWNAMIGAYAQ 412

Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK----VMKDRRVRKE 439
           H     A ++   L+     ++ +Y+   +VLS         E       + +D  VR  
Sbjct: 413 HSHEQQAFEL--FLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPG 470

Query: 440 GG 441
           GG
Sbjct: 471 GG 472



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 167/364 (45%), Gaps = 11/364 (3%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           + ++CA L  A   G  +H L  ++ L    +  + LV  Y +  S + A+ VF+    +
Sbjct: 40  VIQSCARLG-ALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAK 98

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA-AAELAAMEQCRVI 223
           +V  +  +I   AQ+ R  ++L++F +M    +       + A+ A +A    +   R +
Sbjct: 99  NVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRAL 158

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H      G    V+  T L+  Y K G + ++ + F E+++ LN+++WNAM+A +A+   
Sbjct: 159 HALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTF-ESMTELNAVSWNAMIAAFAEHRR 217

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               L     + + G      +++ +++A        +S ++I    +R   +  +    
Sbjct: 218 GLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQL-KSARYIHDCILRTGFDQDV--VN 274

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--IN 401
            +++  G+ G L+DAE +  +M  +PD   W  +++  + HG    A +  + + +  + 
Sbjct: 275 VILNMYGKCGCLQDAEAMFKSMS-QPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVV 333

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR-KEGGRSWIEVKGKVHVFLAGDRM 460
           P DD  YV V +  + +G  +   +V + + DR  +  E   S + + GK  +      +
Sbjct: 334 P-DDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQVTELANSLVNMYGKCGILDVARSI 392

Query: 461 HERT 464
            ++T
Sbjct: 393 FDKT 396


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 181/567 (31%), Positives = 312/567 (55%), Gaps = 24/567 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNS 77
           +H+ ++K   +++  + N LI  Y++   L    ++F+ +   +++SW ++I A+  +  
Sbjct: 269 IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ 328

Query: 78  PL-SLNIF----LSMLRHPTLSFLPNQRTLASL--FKTCASLSHAFL-FGLSLHSLSLKL 129
           PL ++++F    LS ++   L+ +     L+ L   + C S+    L  G  L  +++  
Sbjct: 329 PLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITI-- 386

Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
                   G+A+V  Y++    D+A+ VF+ +   DV+ +  +I G+AQN    +++ ++
Sbjct: 387 --------GNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY 438

Query: 190 ADMRS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
             M    ++ +        L A ++  A+ Q   +HG  + +GL  +V V T L D YGK
Sbjct: 439 NIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGK 498

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
            G + DA  +F + +  +NS+ WN ++A +   G     + LF  +   G  PD  +F+ 
Sbjct: 499 CGRLEDALSLFYQ-IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVT 557

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           +L+A  ++GL  E +   E M+  Y + P L+HY C++   GRAG+LE A +   +M  +
Sbjct: 558 LLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQ 617

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
           PDA++W ALLS   +HG  D+     + L ++ P     +V+++N+ +  G+W+ V E+R
Sbjct: 618 PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIR 677

Query: 429 KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
            +   + +RK  G S +EV  KV VF  G++ H   E++Y +L  L  + + +GYVP   
Sbjct: 678 SIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHR 737

Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
            +L +V D EK   L  HSE+LA+AF L++  P   T+RI KNLR+C DCH   K+IS++
Sbjct: 738 FVLQDVEDDEKEHILMSHSERLAIAFALIA-TPAKTTIRIFKNLRVCGDCHSVTKFISKI 796

Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
            EREI+VRD NR+H F NG C+CGD W
Sbjct: 797 TEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 203/420 (48%), Gaps = 24/420 (5%)

Query: 14  TSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           T  D   +H  ALK     D  +  +LI  YS+   +  +  LF+ +P  ++ SW A+IS
Sbjct: 165 TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMIS 224

Query: 73  AHSNS-----PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
            +  S      L+L+  L  +         +  T+ SL   C   +  F  G+++HS S+
Sbjct: 225 GYCQSGNAKEALTLSNGLRAM---------DSVTVVSLLSACTE-AGDFNRGVTIHSYSI 274

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
           K  L  + F  + L+  Y+ F    + +KVFD +  RD++ + ++I  +  N + + ++S
Sbjct: 275 KHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 334

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGY 246
           +F +MR S +      +       ++L  +  CR + G  +  G    ++ +G  ++  Y
Sbjct: 335 LFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 394

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYS 305
            K G+V  AR VF+  L   + I+WN +++GYAQ G  S  +E+++++E  G  A ++ +
Sbjct: 395 AKLGLVDSARAVFNW-LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGT 453

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           +++VL A   AG   +  K   R+ ++  L   +   T L    G+ GRLEDA  +   +
Sbjct: 454 WVSVLPACSQAGALRQGMKLHGRL-LKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDE 423
           P   ++  W  L++    HG  + A  + K ++D  + P D   +V + +  S  G  DE
Sbjct: 513 P-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKP-DHITFVTLLSACSHSGLVDE 570



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 177/384 (46%), Gaps = 26/384 (6%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
           + +HAR + S Q     I   L+  Y     ++ +   F+HI + ++ +W  +IS +   
Sbjct: 71  KCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRA 130

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            NS   +  F   +    L+  P+ RT  S+ K C ++    + G  +H L+LK      
Sbjct: 131 GNSSEVIRCFSLFMLSSGLT--PDYRTFPSVLKACRTV----IDGNKIHCLALKFGFMWD 184

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +  ++L+H YSR+++  NA+ +FDE+  RD+  + AMI G+ Q+    ++L++   +R+
Sbjct: 185 VYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA 244

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            D  +    V   L A  E     +   IH +++  GL+  + V   LID Y + G + D
Sbjct: 245 MDSVT----VVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRD 300

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            ++VFD  + V + I+WN+++  Y         + LF  + +    PD  + +++ + L 
Sbjct: 301 CQKVFDR-MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359

Query: 315 NAGLAGESEKWIERMKVRYKLEPG--LEHYT---CLISAMGRAGRLEDAERIAMAMPFEP 369
             G     +    R    + L  G  LE  T    ++    + G ++ A  +   +P   
Sbjct: 360 QLG-----DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NT 413

Query: 370 DAAVWRALLSFSAIHGKADMASKM 393
           D   W  ++S  A +G A  A +M
Sbjct: 414 DVISWNTIISGYAQNGFASEAIEM 437



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 147/322 (45%), Gaps = 24/322 (7%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA-LVHFYSRFRSPDNAKKVFDEIR 162
           +LF+ C +L  A      LH+  L +S   +  C SA LV+ Y    +   A+  FD I+
Sbjct: 59  TLFRYCTNLQSA----KCLHA-RLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQ 113

Query: 163 ERDVVCYGAMIVGFAQ---NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
            RDV  +  MI G+ +   +S ++   S+F  M SS +          L+A   +    +
Sbjct: 114 NRDVYAWNLMISGYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACRTVIDGNK 171

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
              IH  A+  G   +V V   LI  Y +   V +AR +FDE + V +  +WNAM++GY 
Sbjct: 172 ---IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDE-MPVRDMGSWNAMISGYC 227

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G+    L L + L     A D  + +++L+A   AG        I    +++ LE  L
Sbjct: 228 QSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESEL 282

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RL 397
                LI      GRL D +++   M +  D   W +++    ++ +   A  + +  RL
Sbjct: 283 FVSNKLIDLYAEFGRLRDCQKVFDRM-YVRDLISWNSIIKAYELNEQPLRAISLFQEMRL 341

Query: 398 IDINPYDDSAYVIVANVLSGVG 419
             I P D    + +A++LS +G
Sbjct: 342 SRIQP-DCLTLISLASILSQLG 362


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/534 (33%), Positives = 300/534 (56%), Gaps = 16/534 (2%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSN------SPLSLNIFLSMLRHPTLSFLPNQRTL 102
           ++Y+  +F  IP PNI SW +LI  +S        P+ L   L+   +P    +PN  TL
Sbjct: 40  INYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYP----VPNSFTL 95

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
           A + K CA ++ AF  GL +HS  LK       F  ++LV+FY +      A+KVF+E+ 
Sbjct: 96  AFVLKACAIVT-AFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMP 154

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
            R++V + AMI G A+   + +++ +F +M+ + +      +   + A A   A++    
Sbjct: 155 VRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYW 214

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +H +     +  ++ + T L+D Y K G +  A++VF  ++ V ++ AW++M+ G+A  G
Sbjct: 215 LHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVF-VHMPVKDTTAWSSMIMGFAYHG 273

Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
                ++ F  +      PD  +FLAVL+A  + GL     ++   M + + +EP +EHY
Sbjct: 274 LAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLM-LEFGIEPSVEHY 332

Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402
            C +  + R+G +E+A RI   M   P+AA WR+LL         ++   + + L+++ P
Sbjct: 333 GCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEP 392

Query: 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHE 462
            +   Y++++N+ S + +W++++E+RKVMK++ ++   G S IEV G VH F+ GD+ H 
Sbjct: 393 LNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHP 452

Query: 463 RTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV-SGAP 521
             + +   + E+       GY P   ++LH V D EK  AL  HSE+ A+A+GL+ + AP
Sbjct: 453 EVKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEEKECALSEHSERFAIAYGLLKTRAP 512

Query: 522 RGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
               +R+VKNLR+C DCHE  K IS++ EREI+VRD  R+H+F+ G+C+C D W
Sbjct: 513 --IVIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 120/265 (45%), Gaps = 8/265 (3%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH+  LK    +   +  +L+  Y K   + ++ ++F  +P  N+V+WTA+IS H+    
Sbjct: 114 VHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGA 173

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++ +F  M +       P+  TL S+   CA ++ A   G  LH+   K  +     
Sbjct: 174 VDEAMELFREMQK---AGIQPDAMTLVSVVSACA-VAGALDIGYWLHAYIEKYFVLTDLE 229

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +ALV  Y++    + AK+VF  +  +D   + +MI+GFA +    D++  F  M  ++
Sbjct: 230 LSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 289

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V          L A A    + + R      +  G++ +V      +D   ++G+V +A 
Sbjct: 290 VTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAY 349

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQ 281
           R+        N+  W +++ G  ++
Sbjct: 350 RITTTMKIPPNAATWRSLLMGCKKK 374


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/573 (30%), Positives = 310/573 (54%), Gaps = 27/573 (4%)

Query: 19  RIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVS----WTALIS 72
           RI +AR +  + SQ D   +N +I  Y +  LL  + +LF  +   N++        ++S
Sbjct: 164 RINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVS 223

Query: 73  A---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKT--CASLSHAFLFGLSLHSLSL 127
           A     N   +  I+  ++ +           L +++    C  ++  F   +S+ +L  
Sbjct: 224 ACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNL-- 281

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
                   F  +A+V  YS+    D+A+ +FD+   +D+VC+  MI  +A++    ++L 
Sbjct: 282 --------FVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALR 333

Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           VF +M  S +   +  +   + A   L  +++ + +H +  ++GL+  + +   LI+ Y 
Sbjct: 334 VFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYA 393

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G +  AR VF E +   N ++W++M+  +A  G+ S  L LF  ++     P+E +F+
Sbjct: 394 KCGGLDAARDVF-EKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFV 452

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            VL    ++GL  E +K    M   Y + P +EHY C++   GRA  L +A  +  +MP 
Sbjct: 453 GVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPM 512

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            P+  +W +L+S   +HG+ ++     KR++ + P  D A V+++N+ +   RWD V  +
Sbjct: 513 APNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRII 572

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           R +M+ ++V KE G S I++ GK H FL GD+ H+++ +IYTKL E++ + +  GYVP  
Sbjct: 573 RWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDG 632

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK-----TLRIVKNLRICRDCHESF 542
             +L +V + EK++ + +HSEKLAL FGL++     +      +RIVKNLR+C DCH  F
Sbjct: 633 GSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFF 692

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           K +S+V E EI+VRD  R+HR+ +G C+C D W
Sbjct: 693 KLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 166/371 (44%), Gaps = 40/371 (10%)

Query: 51  YSLRLFNHI-PSPNIVSWTALIS--AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFK 107
           Y+L LF+ I P P  + + +L+   + S  P +  +F   +RH    F  ++ +   + K
Sbjct: 65  YALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRF--DRISFPPILK 122

Query: 108 TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167
             + +S A   G+ LH  + K++    PF  + L+  Y+     + A+ VFDE+ +RDVV
Sbjct: 123 AVSKVS-ALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVV 181

Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG-- 225
            +  MI  + +   L ++  +F +M+ S+V      +   + A      M   R I+   
Sbjct: 182 TWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFL 241

Query: 226 ------------------HAVVSGLD-----------RNVIVGTGLIDGYGKAGIVSDAR 256
                             +A    +D           RN+ V T ++ GY KAG + DAR
Sbjct: 242 IENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDAR 301

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +FD+   + + + W  M++ YA+       L +F  +   G  PD  + L+V++A  N 
Sbjct: 302 VIFDQT-EMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNL 360

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G   ++ KW+ R      LE  L     LI+   + G L+ A  +   MP   +   W +
Sbjct: 361 GTLDKA-KWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTR-NVVSWSS 418

Query: 377 LLSFSAIHGKA 387
           +++  A+HG+A
Sbjct: 419 MINAFAMHGEA 429


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/549 (31%), Positives = 295/549 (53%), Gaps = 7/549 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D  +   LI  +S+ + +  + ++F+      I  W AL  A + +    ++     R  
Sbjct: 103 DPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMN 162

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLF---GLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
            +    ++ T   L K C +      F   G  +H+  L+          + L+  Y+RF
Sbjct: 163 MMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARF 222

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM--RSSDVGSTMYCVSG 206
                A  VFDE+  ++VV + AMI  +A+N +  ++L +F +M   + D       +  
Sbjct: 223 GCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVS 282

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L+A A  AA+EQ ++IH + +  GLD  + V + LI  Y + G +   + +FD  +   
Sbjct: 283 VLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDR-MHKK 341

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + + WN++++ Y   G     +++F  +   GF+P   SF++VL A  + GL  E +K  
Sbjct: 342 DVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLF 401

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
           E M   + ++P +EHY C++  +GRA RL++A +I   +  EP   VW +LL    IH  
Sbjct: 402 ESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCH 461

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++A +  KRL  + P +   YV++A++ +    WDEV  V+K++  R ++K  GRSWIE
Sbjct: 462 VELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIE 521

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           V+ K++ F + D  + + E ++  L  L  E ++ GY P    +L+++   EK   +  H
Sbjct: 522 VRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGH 581

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+AFGL++ + +G T+RI KNLR+C DCH   K+IS+  +REI+VRD+NR+H F +
Sbjct: 582 SEKLAVAFGLINTS-KGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKD 640

Query: 567 GSCTCGDLW 575
           G C+CGD W
Sbjct: 641 GVCSCGDYW 649



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 20/241 (8%)

Query: 177 AQNSRLVDSLSVFADMR------SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           + N+ L+ SL    +++      S +   T       + +AA   ++     +H   V  
Sbjct: 39  SNNNHLIQSLCKQGNLKQALYLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDG 98

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           G D++  + T LI+ + +   V +AR+VFD+       + WNA+    A  G  + VLEL
Sbjct: 99  GFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYV-WNALFRALALAGRGNDVLEL 157

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGE-------SEKWIERMKVRYKLEPGLEHYT 343
           +  + M G + D +++    T L  A +A E         K I    +R+     +   T
Sbjct: 158 YPRMNMMGVSSDRFTY----TYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMT 213

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
            L+    R G +  A  +   MP + +   W A+++  A +GK   A ++ + ++ +N +
Sbjct: 214 TLMDMYARFGCVSYASAVFDEMPVK-NVVSWSAMIACYAKNGKPYEALELFREMM-LNTH 271

Query: 404 D 404
           D
Sbjct: 272 D 272


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/564 (32%), Positives = 317/564 (56%), Gaps = 16/564 (2%)

Query: 21   VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA----LISAHS 75
            VH  A+K     D S+ N L+  Y      S S  +FN +   +IVSW +    ++S+H+
Sbjct: 498  VHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHA 557

Query: 76   NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
             +  S+ +F +M+R       PN+ T  +L    + LS     G  +H++ LK    +  
Sbjct: 558  PTAESVEVFSNMMRS---GLTPNKVTFVNLLSALSPLS-VLELGKQVHAVVLKHGAIEDN 613

Query: 136  FCGSALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +AL+  Y++    D+ +++F  +   RD V + +MI G+  N  L +++     M  
Sbjct: 614  AVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMH 673

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
            S+        S  L A A +AA+E+   +H   + S L+ +V+V + L+D Y K G +  
Sbjct: 674  SNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDY 733

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            A +VF+ ++S  N  +WN+M++GYA+ G     LE+F  ++  G  PD  +F++VL+A  
Sbjct: 734  ASKVFN-SMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACS 792

Query: 315  NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            +AGL      + E M+  + + P +EHY+C+I  +GRAG+L   +     MP +P+  +W
Sbjct: 793  HAGLVDRGLDYFEMME-DHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIW 851

Query: 375  RALLSF---SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            R +L     S    + D+  +  + L+++ P +   YV+ +N  +  GRW++ A+ R  M
Sbjct: 852  RTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAM 911

Query: 432  KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
                ++KE G+SW+ +   VH F+AGDR H  T++IY KL  L+++ +  GYVP+ +  L
Sbjct: 912  GGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFAL 971

Query: 492  HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            +++ +  K E L YHSEKLA+AF +++ +     +RI+KNLR+C DCH +F+YIS++V R
Sbjct: 972  YDLEEENKEELLSYHSEKLAVAF-VLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCR 1030

Query: 552  EIVVRDVNRYHRFLNGSCTCGDLW 575
            +I++RD  R+H F +G C+CGD W
Sbjct: 1031 QIILRDSIRFHHFEDGKCSCGDYW 1054



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 166/368 (45%), Gaps = 15/368 (4%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           V AR LKS S +D  + + L++ +++  +L  +  +F ++   N V+   LI        
Sbjct: 292 VFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHC 351

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS---HAFLFGLSLHSLSLKLSLHD 133
           S  ++ IF+        SF+ N  T   L    A  S      + G  +H   L+  L D
Sbjct: 352 SEEAVGIFMGTRD----SFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLID 407

Query: 134 -KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            K    + LV+ Y++  + D A +VF  +  RD V +  +I    QN     ++  +  M
Sbjct: 408 LKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMM 467

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R   +  + +     L + A L  +   + +H  AV  GLD +  V   L+  YG  G  
Sbjct: 468 RQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGAR 527

Query: 253 SDARRVFDENLSVLNSIAWNAMMA-GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           S++  +F+ +++  + ++WN++M    +     +  +E+F  +   G  P++ +F+ +L+
Sbjct: 528 SESWEIFN-SMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLS 586

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           AL    +  E  K +  + +++           L+S   ++G ++  E++  +M    DA
Sbjct: 587 ALSPLSVL-ELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDA 645

Query: 372 AVWRALLS 379
             W +++S
Sbjct: 646 VSWNSMIS 653



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 135/293 (46%), Gaps = 13/293 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSML 88
           D  + N+L+  Y+K + L+ + ++F+ +   N VSWT L+S +  S ++     +F +ML
Sbjct: 90  DLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAML 149

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
              +    P   T  S+ + C       L F + +H L  K          +AL+  Y  
Sbjct: 150 WEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGN 209

Query: 148 FRS--PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC-- 203
                P  A++VFD    RD++ + A++  +A+   +V + ++F  M   D    +    
Sbjct: 210 CSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNE 269

Query: 204 -VSGALRAAAELAAMEQCRV--IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
              G+L  A  L++     +  +    + SG   ++ VG+ L+  + + G++ +A+ +F 
Sbjct: 270 HTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIF- 328

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            NL   N++  N ++ G  +Q      + +F +     F  +  +F+ +L+A+
Sbjct: 329 INLKERNAVTLNGLIVGLVKQHCSEEAVGIF-MGTRDSFVVNTDTFVVLLSAV 380


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 196/603 (32%), Positives = 310/603 (51%), Gaps = 57/603 (9%)

Query: 9   PQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSW 67
           P P   S DP I+  + +  S              S    L +S+ +FNH  S PNI ++
Sbjct: 51  PIP---SIDPNIIAVKFIGVS--------------SSHGNLRHSVLIFNHFLSFPNIFAY 93

Query: 68  TALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
            AL+ A   H+    +++ F + L  P     P++ T  S+ K CA L+   L G  +H 
Sbjct: 94  NALLKAFSQHNAWHTTISYFNNQLVLPNAPN-PDEYTFTSVLKACAGLAQV-LEGQKVHC 151

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV---------CYGAM--- 172
              K       F  ++LV  Y +      A+K+FDE+  RDVV         C+  M   
Sbjct: 152 FVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDK 211

Query: 173 -------------------IVGFAQNSRLVDSLSVFADMR-SSDVGSTMYCVSGALRAAA 212
                              I G+A+N +  D++ +F  M+    +      +   L A A
Sbjct: 212 ARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACA 271

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
            L A++  + IH     + ++  + +G  L D Y K G V +A+ VF E +   + I+W+
Sbjct: 272 HLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHE-MHERDVISWS 330

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
            ++ G A  G  +     F  +   G  P++ SF+ +LTA  +AGL  +  ++ + M   
Sbjct: 331 IIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQV 390

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y + P +EHY C++  + RAGRL+ AE +  +MP +P+  VW ALL    I+  A+   +
Sbjct: 391 YGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGER 450

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
           +  R+++++     + V +ANV + +GR D+ A  R  M+D +  K  G SWIE+   V+
Sbjct: 451 VVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVY 510

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
            F  GD  H ++  IY+ + EL  + +  GY P  D ++HN+ + EK +AL  HSEKLAL
Sbjct: 511 EFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLAL 570

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AFGL++ +  G T+RIVKNLR+C DCH++ K IS++VEREIVVRD +R+H F +G C+C 
Sbjct: 571 AFGLINTS-EGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCN 629

Query: 573 DLW 575
           D W
Sbjct: 630 DYW 632


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/561 (31%), Positives = 301/561 (53%), Gaps = 49/561 (8%)

Query: 22  HARALKSSQADRSIYN--NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +AR       +R++++  +L++ Y +S  +  + R+F+ +P  N+V+WTA+++ +S   L
Sbjct: 134 NARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYS---L 190

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           S ++  +         +P +  +A       ++  A+ F   L                 
Sbjct: 191 SGDVVRA---KRAFDSMPERDLIA-----WTAMLSAYAFNGHLR---------------- 226

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-----S 194
                Y+R        ++F  + ERD++ +  M+    +N  L +S  +F  M      S
Sbjct: 227 -----YTR--------EIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALS 273

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             +          L A + L A+ + R IH      G D +++V   L++ YG+ G + D
Sbjct: 274 KGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGD 333

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A+ VFD  +   + I+W++M++ +AQ+G     +EL+H +   G  PD+  F++VL A  
Sbjct: 334 AKIVFD-GMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACS 392

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           N+G+   S  +   +    ++EP LEHY C++  +GRAG+L DAE +   MPF P   ++
Sbjct: 393 NSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLY 452

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
             +LS   ++   +      + + +++P + S Y+ +AN+ S   R  + A +RK+M++R
Sbjct: 453 MTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEER 512

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
            ++K+ G SWIEV  +VH F+AGD+MH + ++IY ++  L  + +  GY      +L +V
Sbjct: 513 GIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDV 572

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + EK   LWYHSEKLA+AFGL+S  P G  LRIVKNLR+C DCH + K IS+V  REI+
Sbjct: 573 EEDEKENLLWYHSEKLAIAFGLISTPP-GAPLRIVKNLRVCSDCHAATKVISKVTGREIL 631

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+H F NG C+C D W
Sbjct: 632 VRDTNRFHHFQNGMCSCNDYW 652



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 8/182 (4%)

Query: 20  IVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           +V A+    S  +R +  +  +++ Y+ +  L Y+  +F  +P  +++SW  +++A   +
Sbjct: 194 VVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVEN 253

Query: 78  PL---SLNIFLSMLRHPTLS--FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            L   S  +F  M RH  LS    PN+ T  +L   C+ L  A   G  +H+   +    
Sbjct: 254 DLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLG-ALAEGRKIHAAVAERGFD 312

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
                 +ALV+FY R  +  +AK VFD +R RDV+ + +MI  FAQ  R+ +++ ++  M
Sbjct: 313 TDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRM 372

Query: 193 RS 194
            S
Sbjct: 373 LS 374



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 18/228 (7%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +AL+  ++     + AK +FD ++ERD++ +  M+   A  S + D+   F  M   D  
Sbjct: 58  TALLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERD-- 115

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
             +   +  L A AE   ME  R           +RN+   T L+  YG++G V  A RV
Sbjct: 116 --LVAWTAMLAANAERGQMENARETFDQMP----ERNLFSWTSLLSAYGRSGDVKAAGRV 169

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           FD ++   N +AW AM+ GY+  GD       F  +  R    D  ++ A+L+A    G 
Sbjct: 170 FD-SMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPER----DLIAWTAMLSAYAFNGH 224

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
              + +  +RM  R      L  +  +++A+     LE+++ +   MP
Sbjct: 225 LRYTREIFQRMPER-----DLISWATMVAALVENDLLEESKELFDRMP 267



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 115/258 (44%), Gaps = 29/258 (11%)

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS----- 199
           + R    + A+++FD I +RD   +G M+  +A++  L ++  VF  M    +GS     
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALL 61

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           + + +SG    A  L    Q             +R++I  T ++        + DA+  F
Sbjct: 62  SAFALSGHHEEAKTLFDTMQ-------------ERDLIAWTIMLTVLATFSNIEDAKYHF 108

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D+ +   + +AW AM+A  A++G      E F  +  R      +S+ ++L+A   +G  
Sbjct: 109 DQ-MPERDLVAWTAMLAANAERGQMENARETFDQMPERNL----FSWTSLLSAYGRSGDV 163

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             + +  + M      E  L  +T +++    +G +  A+R   +MP E D   W A+LS
Sbjct: 164 KAAGRVFDSMP-----EWNLVAWTAMLTGYSLSGDVVRAKRAFDSMP-ERDLIAWTAMLS 217

Query: 380 FSAIHGKADMASKMGKRL 397
             A +G      ++ +R+
Sbjct: 218 AYAFNGHLRYTREIFQRM 235


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/511 (34%), Positives = 274/511 (53%), Gaps = 34/511 (6%)

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           LP+  T + + K C  LS   + G ++H L  KL      F  + +++ Y       +A 
Sbjct: 7   LPDTFTCSFVLKACLKLSDV-VNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65

Query: 156 KVFDEIRERDVV-----------------CYG--------------AMIVGFAQNSRLVD 184
            +F+++ +RD V                  YG              +MI GF Q  +  +
Sbjct: 66  LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           ++ +F  +    V      V   L A A+L  ++  R++H ++  SG  RNV V   LID
Sbjct: 126 AIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLID 185

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K G + +ARRVF E +     ++W+AM+AG A  G     L LF  +   G  P+  
Sbjct: 186 MYVKCGCLENARRVFYE-MEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGV 244

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +F+ +L A  + GL  E  ++   M   Y + P +EHY C++    RAG LE+A    ++
Sbjct: 245 TFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILS 304

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
           MP +P+  VW ALL    +H   D+A +  K L +++P +D  YV+++N+ +   RW++ 
Sbjct: 305 MPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDA 364

Query: 425 AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
           A VRK+MKDR V+K  G S I V G VH F+AGD+ H + EDI     +L+ + +R GY 
Sbjct: 365 ARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYA 424

Query: 485 PVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKY 544
           P    +L ++ ++EK + L+ HSEKLA+ FGL++  P G  +RI+KNLR+C DCH + K 
Sbjct: 425 PKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMT-TPEGTPIRIMKNLRVCEDCHAALKI 483

Query: 545 ISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IS +V REI+VRD NR+H F +G C+C D W
Sbjct: 484 ISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 115/267 (43%), Gaps = 41/267 (15%)

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR  DV    +  S  L+A  +L+ +   + IHG     G   N+ +   +++ YG  G 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 252 VSDARRVFDE---------NLSVL---------------------NSIAWNAMMAGYAQQ 281
           + DA  +F++         N+ +                      N  +W +M++G+ Q 
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
           G  +  ++LF  LE     P+E + ++VL A  + G     +  + R+   Y  + G + 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLG-----DLDLGRIVHEYSTKSGFKR 175

Query: 342 --YTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
             + C  LI    + G LE+A R+   M  E     W A+++  A+HG+A+ A  +   +
Sbjct: 176 NVHVCNTLIDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAEEALCLFSEM 234

Query: 398 IDINPYDDS-AYVIVANVLSGVGRWDE 423
           I +    +   ++ + +  S +G  DE
Sbjct: 235 IKLGVKPNGVTFIGLLHACSHMGLIDE 261



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           RIVH  + KS  + +  + N LI  Y K   L  + R+F  +    +VSW+A+I+    H
Sbjct: 162 RIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMH 221

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
             +  +L +F  M++   L   PN  T   L   C+ + 
Sbjct: 222 GQAEEALCLFSEMIK---LGVKPNGVTFIGLLHACSHMG 257


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/529 (32%), Positives = 288/529 (54%), Gaps = 13/529 (2%)

Query: 48  LLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL-PNQRTLASLF 106
           +LSY+  +F  I +PN+ +W  +   ++ S  + +  L   R   +S + P+  T   L 
Sbjct: 79  VLSYAYNVFTMIHNPNVFTWNTMTRGYAESD-NPSPALRFYRQMIVSRIEPDTHTYPFLL 137

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166
           K   S S     G ++HS++++       F  ++L+H Y+     ++A  VF+ +R+RD+
Sbjct: 138 KAI-SKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDL 196

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226
           V   ++I GFA N R  ++L++F +M +  V    + V   L A+AEL A+E  R +H +
Sbjct: 197 VAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVY 256

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
            +  GL  N  V   L+D Y K   + +  R         N+++W +++ G A  G    
Sbjct: 257 LLKVGLRENSHVTNSLLDLYAKCDAIWEXER---------NAVSWTSLIVGLAVNGFGEE 307

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
            LELF  +E +G  P E +F+ VL A  + G+  E   +  RMK  + + P +EHY C++
Sbjct: 308 ALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMV 367

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
             + RAG ++ A      MP +P+A  WR LL    IHG   +       L+ + P    
Sbjct: 368 DLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSG 427

Query: 407 AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
            YV+++N+ +   RW +V  +R+ M    V+K  G S +E+  +V+ F  G+R H +++D
Sbjct: 428 DYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQD 487

Query: 467 IYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTL 526
           +Y  L ++ E  +  GYVP    +L ++ + EK +AL YHSEK A+AF  ++ AP G T+
Sbjct: 488 VYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAP-GTTI 546

Query: 527 RIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           R++KNLR+C DCH + K +++V +REIV+RD  R+H F  GSC+C D W
Sbjct: 547 RVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 205/621 (33%), Positives = 324/621 (52%), Gaps = 67/621 (10%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKS--NLLSYSLRLFNHIPSPNIVSWTALIS--AHS 75
           VHA   K+    D  I   L+ + + S  + L Y+ RLF H P+P++     LI   A S
Sbjct: 24  VHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAES 83

Query: 76  NSPL-SLNIFLSMLRHPT-------LSFL----PNQRTLASLFKT-CASLSHAF---LFG 119
           ++P  SL  F+ M R  T        +FL     + R+L S  +  C ++ H     LF 
Sbjct: 84  DTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFV 143

Query: 120 ----LSLHSLSLKLSLHDKPF--------------------CG----------------- 138
               +S++S    ++   K F                    CG                 
Sbjct: 144 GTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNL 203

Query: 139 ---SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              + ++  Y++    + A+K+F E+  +D V +  MIVGFA N    ++   F +++  
Sbjct: 204 TSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQV 263

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +      ++GAL A A+  A+E  +++HG    SG    V V   L+D Y K G V  A
Sbjct: 264 GMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMA 323

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R VF+      + ++W +M+AG A  G     ++LFH +E  G  PD  +F+++L A  +
Sbjct: 324 RLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSH 383

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AGL  +  ++  +MK  Y +EP +EHY C++   GRAG+L+ A    + MP  P A +WR
Sbjct: 384 AGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWR 443

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
            LL   +IHG   +A ++ +RL +++P +   +V+++N+ +  G+W +VA VR+ M D+R
Sbjct: 444 TLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQR 503

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG-YVPVWDEMLHNV 494
           + K  G S IEV   ++ F+AG+  +  TE+ Y KL E+M +    G Y+P    +LH++
Sbjct: 504 MNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDI 563

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            D EK +++  HSEKLA+AFG ++   +G  +RIVKNLR+CRDCH   K IS+V   EIV
Sbjct: 564 EDEEKEDSVSRHSEKLAVAFG-IARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIV 622

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD +R+H F  GSC+C D W
Sbjct: 623 VRDRSRFHSFKTGSCSCRDYW 643



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 158/382 (41%), Gaps = 53/382 (13%)

Query: 98  NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN---A 154
            Q   +SL   C SL +       +H+   K  L   P     L+  +S    PD    A
Sbjct: 4   TQHLCSSLLTNCRSLKNL----KQVHAYVCKTGLDTDPIIAGKLL-LHSAVSVPDALDYA 58

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAE 213
           +++F      DV  +  +I G A++    +SL  F +MR         +  +  L+AAA 
Sbjct: 59  RRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAAS 118

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE----NLSVLNSI 269
             ++E    +H  A+V GLD ++ VGT L+  Y + G V+ A++VF+E    N+   N++
Sbjct: 119 YRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAV 178

Query: 270 --------------------------AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
                                     +WN M+AGY + G+     +LF  LEM     D+
Sbjct: 179 VTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLF--LEMP--VKDD 234

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            S+  ++    + G   E+  +   ++ +  + P     T  +SA   AG +E  + +  
Sbjct: 235 VSWSTMIVGFAHNGFFYEAFGFFRELQ-QVGMRPNEVSLTGALSACADAGAIEFGKILHG 293

Query: 364 AMPFEPDAAVW-----RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
            +  E    +W      ALL   +  G   MA  + +R+ +         +I    + G 
Sbjct: 294 FI--EKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGY 351

Query: 419 GRWDEVAEVRKVMKDRRVRKEG 440
           G  +E  ++   M++  +R +G
Sbjct: 352 G--EEAIQLFHEMEESGIRPDG 371


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 180/545 (33%), Positives = 289/545 (53%), Gaps = 9/545 (1%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNIFLSMLRH 90
           S+   LI+ +SK   +  +  LF  I   +++S  A+IS  +    +  S+ +F  +L  
Sbjct: 67  SLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSS 126

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
                  +  T+  L    +   H++L    +H   +KL +       +AL   Y R   
Sbjct: 127 GERV---SSSTIVGLIPVYSPFGHSYLCN-CIHGFCVKLGIVSHSSVSTALTTVYCRLNE 182

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
              A+++FDE  E+ +  + AMI G  QN     ++S+F  M+ ++V      V+  L A
Sbjct: 183 MIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSA 242

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A++ A+     +H     +  + NV V T LID Y K G ++ AR +FD  +   N + 
Sbjct: 243 CAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDL-MPEKNEVT 301

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WNAM++GY   G     L+LF+ +      P   +FL+VL A  +AGL  E +     M 
Sbjct: 302 WNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMV 361

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             +  EP  EHY C++  +GRAG+L+ A     AMP EP   VW ALL    IH   ++A
Sbjct: 362 HDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLA 421

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
               ++L +++P +   YV+++N+ S   ++ + A VR+V K +R+ K  G + IE+   
Sbjct: 422 HVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQV 481

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
            HVF +GD+ H +++ IY +L +L  +    G+      +LH++ + EK   +  HSEKL
Sbjct: 482 PHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKL 541

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AFGL+S  P G  +RI+KNLR+C DCH   K++S++ +R IVVRD NR+H F +G C+
Sbjct: 542 AIAFGLISTEP-GAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCS 600

Query: 571 CGDLW 575
           CGD W
Sbjct: 601 CGDYW 605



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 125/277 (45%), Gaps = 5/277 (1%)

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G+ +  L++K   +      + L+  +S+    + A+ +F EIR++D++   AMI GF 
Sbjct: 49  LGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFT 108

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
            N    DS+ +F ++ SS    +   + G +   +       C  IHG  V  G+  +  
Sbjct: 109 CNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSS 168

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA-WNAMMAGYAQQGDQSTVLELFHLLEM 296
           V T L   Y +   +  AR++FDE  S   ++A WNAM++G  Q G     + LF  ++ 
Sbjct: 169 VSTALTTVYCRLNEMIFARQLFDE--SAEKTLASWNAMISGCTQNGLTDAAISLFQTMQK 226

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
               P+  +  ++L+A    G     E W+  +    + E  +   T LI    + G + 
Sbjct: 227 NNVNPNPVTVTSILSACAQIGALSLGE-WVHSLIKSNRFESNVYVSTALIDMYAKCGSIT 285

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            A  +   MP E +   W A++S   +HG    A K+
Sbjct: 286 VARELFDLMP-EKNEVTWNAMISGYGLHGHGQEALKL 321



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 108/270 (40%), Gaps = 46/270 (17%)

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           MI GF +NS   DS+ VF DM   +     +  V   L A AEL  ++    I   A+  
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           G   +V + TGLI  + K G V  AR +F E +   + I+ NAM++G+   G+    + L
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGE-IRKKDLISCNAMISGFTCNGETEDSVRL 119

Query: 291 FHLLEMRG--------------FAPDEYSFLA-VLTALC-NAGLAGESEKWIERMKVRYK 334
           F  L   G              ++P  +S+L   +   C   G+   S            
Sbjct: 120 FKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHS-----------S 168

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA---- 390
           +   L    C ++ M  A +L D          E   A W A++S    +G  D A    
Sbjct: 169 VSTALTTVYCRLNEMIFARQLFDESA-------EKTLASWNAMISGCTQNGLTDAAISLF 221

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
             M K  ++ NP      V V ++LS   +
Sbjct: 222 QTMQKNNVNPNP------VTVTSILSACAQ 245


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 170/467 (36%), Positives = 263/467 (56%), Gaps = 3/467 (0%)

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
           CAS     L G  +H+ +LK  L    + GSALV  Y +   P  A +VF+ + E+++V 
Sbjct: 193 CASTKEVVL-GSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVS 251

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           + A++  + QN    D+L +F DM    V    +  + AL + A LA ++    +    +
Sbjct: 252 WTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTM 311

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
            +G    + V   L++ Y K+G V DARRVF  ++   + ++WN+++ GYA  G     +
Sbjct: 312 KTGHWGLLPVCNALMNMYSKSGSVEDARRVF-LSMPCRDVVSWNSIIIGYAHHGRAREAM 370

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
           E FH +      P   +F+ VL+A    GL  E   ++  M     ++PG EHYTC++  
Sbjct: 371 EAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGL 430

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
           + R GRL++AER   +     D   WR+LLS   ++    +  ++ +++  + P D   Y
Sbjct: 431 LCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTY 490

Query: 409 VIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIY 468
           V+++N+ +   RWD V +VR++M++  VRKE G SWI+V  +VHVF + D+ H   E I 
Sbjct: 491 VLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQIT 550

Query: 469 TKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRI 528
            KL EL+++ + +GYVP     LH+V D +K E L YHSEKLALAFGL+   P+G+ +RI
Sbjct: 551 KKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIR-TPKGEAIRI 609

Query: 529 VKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +KN+RIC DCH + K IS    R IVVRD  R+H   +G C+C D W
Sbjct: 610 MKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 656



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 170/374 (45%), Gaps = 48/374 (12%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           + VHAR +++++ D   YNNLI  Y K   L  + ++F+ +PS N VS   L+S +++S 
Sbjct: 36  KAVHARVVRAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSG 95

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138
              +  L++LR     F  N+  L+S     A +  ++  G   H  ++K  L + P+  
Sbjct: 96  RHRDA-LALLR--VADFGLNEYVLSSAVAATAHV-RSYDMGRQCHGYAIKAGLAEHPYVC 151

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           SA++H Y +    D A K   +  E                             +   +G
Sbjct: 152 SAVLHMYCQCAHMDEAVKYSKKHGE-----------------------------KCRAMG 182

Query: 199 STMYC-VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
           S + C V G   +  E+    Q   +H  A+   L+ NV VG+ L+D YGK     +A R
Sbjct: 183 SCVICRVLGHCASTKEVVLGSQ---VHTQALKRRLELNVYVGSALVDMYGKCDFPHEANR 239

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF E L   N ++W A+M  Y Q       L+LF  +EM G  P+E+++   L +   AG
Sbjct: 240 VF-EVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSC--AG 296

Query: 318 LA----GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           LA    G +          + L P       L++   ++G +EDA R+ ++MP   D   
Sbjct: 297 LATLKNGNALGACTMKTGHWGLLPVC---NALMNMYSKSGSVEDARRVFLSMPCR-DVVS 352

Query: 374 WRALLSFSAIHGKA 387
           W +++   A HG+A
Sbjct: 353 WNSIIIGYAHHGRA 366



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 136/267 (50%), Gaps = 21/267 (7%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VH +ALK   + +  + + L+  Y K +    + R+F  +P  NIVSWTA+++A++ + L
Sbjct: 205 VHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNEL 264

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD-KP 135
              +L +FL M         PN+ T A    +CA L+     G +L + ++K       P
Sbjct: 265 FEDALQLFLDM---EMEGVRPNEFTYAVALNSCAGLA-TLKNGNALGACTMKTGHWGLLP 320

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            C +AL++ YS+  S ++A++VF  +  RDVV + ++I+G+A + R  +++  F DM  +
Sbjct: 321 VC-NALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFA 379

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYGKA 249
           +   +     G L A A+L  +++     G   ++ + + V V  G      ++    + 
Sbjct: 380 EEVPSYVTFIGVLSACAQLGLVDE-----GFYYLNIMMKEVGVKPGKEHYTCMVGLLCRV 434

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMA 276
           G + +A R  + N    + +AW ++++
Sbjct: 435 GRLDEAERFIESNCIGTDVVAWRSLLS 461


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 176/560 (31%), Positives = 291/560 (51%), Gaps = 7/560 (1%)

Query: 19   RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            +IVHA  +  +   +  I N L+T Y K  L+  + ++   +P  ++V+W ALI  H++ 
Sbjct: 570  KIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADD 629

Query: 78   --PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              P +     +++R   L  L N  T+ +L  TC S  +    G+ +H+  +        
Sbjct: 630  KDPNATIQAFNLMRREGL--LSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDT 687

Query: 136  FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            +  S+L+  Y++    + +  +FD +  ++   + A+    A      ++L   A MR+ 
Sbjct: 688  YVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRND 747

Query: 196  DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
             V    +  S AL     L  +++ + +H   +  G + +  V    +D YGK G + D 
Sbjct: 748  GVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDV 807

Query: 256  RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             R+      + +  +WN +++  A+ G      E FH +   G  PD  +F+++L+A  +
Sbjct: 808  FRILPIP-KIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSH 866

Query: 316  AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             GL  E   +   M   + +   +EH  C+I  +GR+GRL +AE     MP  P+  VWR
Sbjct: 867  GGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWR 926

Query: 376  ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
            +LL+   +HG  ++  K   RL ++N  DDSAYV+ +NV +   RW +V  VRK M+ + 
Sbjct: 927  SLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQS 986

Query: 436  VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
            ++K+   SWI++K KV  F  GD+ H ++  IY KL EL +     G++P     L +  
Sbjct: 987  LKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTREEGHMPDTSYALQDTD 1046

Query: 496  DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
            + +K   LW HSE++ALAFGL++ A  G  LRI KNLR+C DCH  FK +S++V R+IVV
Sbjct: 1047 EEQKEHNLWNHSERIALAFGLINSA-EGSPLRIFKNLRVCGDCHSVFKLVSKIVGRKIVV 1105

Query: 556  RDVNRYHRFLNGSCTCGDLW 575
            RD  R+H F  G C+C D W
Sbjct: 1106 RDSYRFHHFHGGKCSCSDYW 1125



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 178/376 (47%), Gaps = 22/376 (5%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H   +K    ++  +  +L+  Y     +S + +LF  I  PNIVSWT+L+  ++++
Sbjct: 269 RQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADN 328

Query: 78  PLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             +   LNI+   LRH  L    N  T+A++ +TC       + G  +    +K  L   
Sbjct: 329 GHTKEVLNIY-RHLRHNGLICTGN--TMATVIRTCGMFGDKTM-GYQILGDVIKSGLDTS 384

Query: 135 PF-CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                ++L+  +  + S + A +VF+ ++ERD + + ++I   A N R  +SL  F  MR
Sbjct: 385 SVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMR 444

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
            +   +    +S  L A      ++  R +HG    SGL+ NV V   L+  Y +AG   
Sbjct: 445 RTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSE 504

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQS-TVLELFHLLEMRGFAPDEYSFLAVLTA 312
           DA  VF   +   + I+WN+MMA + + G  S  +L L  +L+ R  A +  +F   L+A
Sbjct: 505 DAELVF-HTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRK-AMNYVTFTTALSA 562

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             N     E  K +    + + +   L     L++  G+ G +++A+++   MP E D  
Sbjct: 563 CYNL----EKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMP-ERDVV 617

Query: 373 VWRALLSFSAIHGKAD 388
            W AL     I G AD
Sbjct: 618 TWNAL-----IGGHAD 628



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 163/378 (43%), Gaps = 13/378 (3%)

Query: 19  RIVHARALKSSQADRSIYNNLITN-YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + +HA  +K      + Y N + N YSK   + Y+  +F+ +   N  SW  +IS     
Sbjct: 167 KALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRV 226

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
                ++  F  M  +      P+   +AS+   C            +H   +K  L   
Sbjct: 227 GWYHKAMQFFCHMFEN---GVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSN 283

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F G++L+HFY    S   A K+F+EI E ++V + +++V +A N    + L+++  +R 
Sbjct: 284 VFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRH 343

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR-NVIVGTGLIDGYGKAGIVS 253
           + +  T   ++  +R             I G  + SGLD  +V V   LI  +G    V 
Sbjct: 344 NGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVE 403

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD-EYSFLAVLTA 312
           +A RVF+ N+   ++I+WN+++   A  G       L H   MR   P  +Y  ++ L  
Sbjct: 404 EASRVFN-NMQERDTISWNSIITASAHNGRFEE--SLGHFFWMRRTHPKTDYITISALLP 460

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
            C +    +  + +  +  +  LE  +     L+S   +AG  EDAE +   MP   D  
Sbjct: 461 ACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMP-ARDLI 519

Query: 373 VWRALLSFSAIHGKADMA 390
            W ++++     GK   A
Sbjct: 520 SWNSMMASHVEDGKYSHA 537



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 158/344 (45%), Gaps = 16/344 (4%)

Query: 82  NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSAL 141
           N FLS   H  +    N +    L K  + +S   + G +LH+L +K  +    F  + L
Sbjct: 130 NEFLSYGIHTFIRNHSNPQVSRFLQKGFSEISEGNV-GKALHALCVKDVIQQNTFYTNTL 188

Query: 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201
           V+ YS+F S   A+ VFD++ +R+   +  MI GF +      ++  F  M  + V  + 
Sbjct: 189 VNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSS 248

Query: 202 YCVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
           Y ++  + A      M E  R IHG+ V  GL  NV VGT L+  YG  G VS+A ++F+
Sbjct: 249 YVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFE 308

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
           E +   N ++W ++M  YA  G    VL ++  L   G      +   V+      G+ G
Sbjct: 309 E-IEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRT---CGMFG 364

Query: 321 ESEKWIERMKVRYKLEPGLEHYTC-----LISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             +K +    +   ++ GL+  +      LIS  G    +E+A R+   M  E D   W 
Sbjct: 365 --DKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQ-ERDTISWN 421

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419
           ++++ SA +G+ +    +G        +  + Y+ ++ +L   G
Sbjct: 422 SIITASAHNGRFE--ESLGHFFWMRRTHPKTDYITISALLPACG 463


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/574 (31%), Positives = 309/574 (53%), Gaps = 14/574 (2%)

Query: 11  PQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           P  ++T   +  A  + S+  D  +   L+T Y++SN LS +   F+ I SP++VSW A+
Sbjct: 233 PVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAM 292

Query: 71  ISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL--SHAFLFGLSLHSL 125
            +A   H     +L +F  ML        P+  T  +    CA+     A   G  + SL
Sbjct: 293 AAAYLQHHRPREALVLFERMLLE---GVRPSVATFITALTACAAYPPQTASAIGKRIQSL 349

Query: 126 SLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLV 183
             +  L       +A ++ Y++  S  +A+ VF+ I    RD + + +M+  +  +    
Sbjct: 350 LEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGK 409

Query: 184 DSLSVFADMRSSD-VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
           ++  +F  M +   V          L A+    ++ Q R IH   V +G + + ++   L
Sbjct: 410 EAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNAL 469

Query: 243 IDGYGKAGIVSDARRVFDENLSVL-NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           ++ Y K G + DA+ +FD++ S   + IAW +++AGYAQ G     L+LF  ++ +G  P
Sbjct: 470 LNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRP 529

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           +  +F++ LTA  + G   +  + +  M   + + P  +H++C++  +GR GRL++AE++
Sbjct: 530 NHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKL 589

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
            +    + D   W ALL       + +   +  +R++ ++P   S+Y+++A++ +  GRW
Sbjct: 590 -LERTSQADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRW 648

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
           +E A +RK M D+ +R + G S +EV  ++H F AGD+ H ++E+IY +L  L    +  
Sbjct: 649 NEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAA 708

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           GYV     +LH+V    K   L  HSEKLA+AFGL+S  P G  LR++KNLR+C DCH +
Sbjct: 709 GYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMS-TPSGSPLRVIKNLRVCSDCHTA 767

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            K IS+V  R+I++RD +RYH F +G+C+CGD W
Sbjct: 768 TKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 801



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 142/314 (45%), Gaps = 17/314 (5%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN   L +L   C+ L +    G  +HS        +    G+AL+  YS+  S  +AK+
Sbjct: 5   PNCHALIALVNACSCLGN-LAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQ 63

Query: 157 VFDEI---RERDVVCYGAMIVGFAQNSRLVDSLSVFADMR---SSDVGSTMYCVSGALRA 210
            FD +    +RDVV + AMI  F +N    ++L +F DM    +    S  +        
Sbjct: 64  AFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCV 123

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF----DENLSVL 266
            A L ++E  R IHG  V +G++R   V T L+D YGK G + DA  VF    DE  S  
Sbjct: 124 EAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPST- 182

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + +  +AM++   Q G     L LF+ + + G  P   + ++VL A C+    G +  ++
Sbjct: 183 SLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNA-CSMLPVGSATAFV 241

Query: 327 --ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
             + M+V       +   T L++   R+  L  A     A+   PD   W A+ +    H
Sbjct: 242 LEQAMEVVSATRDNVLGTT-LLTTYARSNDLSRARATFDAIQ-SPDVVSWNAMAAAYLQH 299

Query: 385 GKADMASKMGKRLI 398
            +   A  + +R++
Sbjct: 300 HRPREALVLFERML 313


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 170/458 (37%), Positives = 267/458 (58%), Gaps = 2/458 (0%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G+++H+ S+ L      F  +ALV  YS+      A+K+FD IR+R VV + AMI G+ Q
Sbjct: 128 GMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQ 187

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N     ++ V+ +M+ + V          L A A+  A++  R +    V   +D +V +
Sbjct: 188 NGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFL 247

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           G+ L++ Y + G+VS AR  FD  L   N + W +M+AGY   G     ++LFHL+ + G
Sbjct: 248 GSALVNMYARCGLVSKARDWFDR-LQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEG 306

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
             P++ +F+AVL A  +AGL  E     + MK  Y L P  EHY  ++   GRAG L+DA
Sbjct: 307 PTPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDA 366

Query: 359 -ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
            + I  ++P EP   VW A+L    +H   ++  ++ +RLI + P + S  V+++N+ + 
Sbjct: 367 MQFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYAL 426

Query: 418 VGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEE 477
            G+ + V +VR VM  RR++K+ G S IE+ G  H+F  G++ H++T +IY  L EL+  
Sbjct: 427 SGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYLEELIHR 486

Query: 478 CERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRD 537
               GYVP  D +LH + + E+  AL YHSEKLA+A+GL+  +     +R++KNLRIC D
Sbjct: 487 ISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKNLRICGD 546

Query: 538 CHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           CH + K++S V  REI+VRD +R+H F +G C+C + W
Sbjct: 547 CHLAIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW 584



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 4/259 (1%)

Query: 21  VHARA-LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA + L    +DR +   L+  YSK   L  + +LF+ I   ++V+W A+IS +  + L
Sbjct: 131 VHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGL 190

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +               +P+  T  +    CA  + A   G  +    +   +    F GS
Sbjct: 191 AERAIEVYREMQVAQVVPDSATFVTTLSACAQ-AGALDLGREVERRIVSDQMDVSVFLGS 249

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV+ Y+R      A+  FD ++ER+VV + +MI G+  +    +++ +F  MR      
Sbjct: 250 ALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTP 309

Query: 200 TMYCVSGALRAAAELAAMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                   L A A    + + R        V GL         ++D YG+AG++ DA + 
Sbjct: 310 NDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQF 369

Query: 259 FDENL-SVLNSIAWNAMMA 276
             +++        W AM+ 
Sbjct: 370 IRDSIPGEPGPEVWTAMLG 388


>gi|41469322|gb|AAS07178.1| putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
 gi|108709518|gb|ABF97313.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 654

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 164/528 (31%), Positives = 281/528 (53%), Gaps = 9/528 (1%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           ++F+ +P  N V+W ALI  ++ +     ++ +F  M R  +    P++ T  +L     
Sbjct: 130 KVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGS-HVAPDRYTFPALLSGIG 188

Query: 111 ---SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167
                      G +LH+  +K  L   PF G++LV  Y+  R+ ++AK  FD++   D +
Sbjct: 189 REGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPI 248

Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
            + +MI  +        +L +F +M   D+  T +  S        +  +E  + +H H+
Sbjct: 249 VWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHS 308

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
           + S  +++  +   L+  Y   G ++DA++VF  N   +N I++N+M++   Q G     
Sbjct: 309 LKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSN-DCVNVISYNSMISALGQHGYPKEA 367

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           LE F  ++  G  PDE + L ++++  +AGL  E  +    M     ++P  +HY C++ 
Sbjct: 368 LEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVD 427

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
            + R+G +  A +    MPFE +A +WR +L   + H   +   ++ + L ++ PY+ + 
Sbjct: 428 MLARSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATN 487

Query: 408 YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDI 467
           Y+++ N+ + +GRW E  +VR +M +R V K+   SWIE+  + + F   DR H  + +I
Sbjct: 488 YILLGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREI 547

Query: 468 YTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLR 527
           Y  L  L+   +  GYVP      HN+    K E+L+YH EKLA AFG ++ AP G TLR
Sbjct: 548 YRNLDRLISTIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLA-APSGGTLR 606

Query: 528 IVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           I+KNLR+C DCH ++KY S V  REI++RD  R+H F +G C+CGD W
Sbjct: 607 IMKNLRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 654



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 17/280 (6%)

Query: 97  PNQRTLASLFKTCASLSH------AFLFGLSLHSLSLK---LSLHDKPFCGSALVHFYSR 147
           P  R  ++L K  +S +       +   G  LH+ ++    L   D     +A++ FY+ 
Sbjct: 62  PTPRAFSALLKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYAS 121

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR--SSDVGSTMYC-- 203
            R PD A+KVFD +  R+ V + A+I G+AQ  R  +++ +F DM+   S V    Y   
Sbjct: 122 CREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFP 181

Query: 204 --VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
             +SG  R       +E    +H H + +GL+R+  VG  L+  Y     + DA+  FD+
Sbjct: 182 ALLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQ 241

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            +   + I W++M++ Y    ++   L +F  +  +   P ++ +  V +     G+  E
Sbjct: 242 -VGSSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGIL-E 299

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
             K +    ++   E     +  L++     G + DA+++
Sbjct: 300 MGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKV 339



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 10/101 (9%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VHA +LKS ++ D +++N L+T YS    ++ + ++F+     N++S+ ++ISA   H  
Sbjct: 304 VHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGY 363

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
              +L  F  M        +P++ TL +L    +S +HA L
Sbjct: 364 PKEALEHFRQM---KFAGLMPDEVTLLNLI---SSFNHAGL 398


>gi|125544635|gb|EAY90774.1| hypothetical protein OsI_12377 [Oryza sativa Indica Group]
          Length = 653

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 164/528 (31%), Positives = 281/528 (53%), Gaps = 9/528 (1%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           ++F+ +P  N V+W ALI  ++ +     ++ +F  M R  +    P++ T  +L     
Sbjct: 129 KVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGS-HVAPDRYTFPALLSGIG 187

Query: 111 ---SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167
                      G +LH+  +K  L   PF G++LV  Y+  R+ ++AK  FD++   D +
Sbjct: 188 REGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPI 247

Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
            + +MI  +        +L +F +M   D+  T +  S        +  +E  + +H H+
Sbjct: 248 VWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHS 307

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
           + S  +++  +   L+  Y   G ++DA++VF  N   +N I++N+M++   Q G     
Sbjct: 308 LKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSN-DCVNVISYNSMISALGQHGYPKEA 366

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
           LE F  ++  G  PDE + L ++++  +AGL  E  +    M     ++P  +HY C++ 
Sbjct: 367 LEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVD 426

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
            + R+G +  A +    MPFE +A +WR +L   + H   +   ++ + L ++ PY+ + 
Sbjct: 427 MLARSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATN 486

Query: 408 YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDI 467
           Y+++ N+ + +GRW E  +VR +M +R V K+   SWIE+  + + F   DR H  + +I
Sbjct: 487 YILLGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREI 546

Query: 468 YTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLR 527
           Y  L  L+   +  GYVP      HN+    K E+L+YH EKLA AFG ++ AP G TLR
Sbjct: 547 YRNLDRLISTIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLA-APSGGTLR 605

Query: 528 IVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           I+KNLR+C DCH ++KY S V  REI++RD  R+H F +G C+CGD W
Sbjct: 606 IMKNLRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW 653



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 17/280 (6%)

Query: 97  PNQRTLASLFKTCASLSH------AFLFGLSLHSLSLK---LSLHDKPFCGSALVHFYSR 147
           P  R  ++L K  +S +       +   G  LH+ ++    L   D     +A++ FY+ 
Sbjct: 61  PTPRAFSALLKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYAS 120

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR--SSDVGSTMYC-- 203
            R PD A+KVFD +  R+ V + A+I G+AQ  R  +++ +F DM+   S V    Y   
Sbjct: 121 CREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFP 180

Query: 204 --VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
             +SG  R       +E    +H H + +GL+R+  VG  L+  Y     + DA+  FD+
Sbjct: 181 ALLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQ 240

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            +   + I W++M++ Y    ++   L +F  +  +   P ++ +  V +     G+  E
Sbjct: 241 -VGSSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGIL-E 298

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
             K +    ++   E     +  L++     G + DA+++
Sbjct: 299 MGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKV 338



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 10/101 (9%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           VHA +LKS ++ D +++N L+T YS    ++ + ++F+     N++S+ ++ISA   H  
Sbjct: 303 VHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGY 362

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
              +L  F  M        +P++ TL +L    +S +HA L
Sbjct: 363 PKEALEHFRQM---KFAGLMPDEVTLLNLI---SSFNHAGL 397


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 188/570 (32%), Positives = 316/570 (55%), Gaps = 28/570 (4%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H   LK     D S+ N L+  Y+++   +  L++F+ +P  + VSW ++I A S+S  
Sbjct: 983  IHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEA 1042

Query: 80   SLN----IFLSMLRH----PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
            S++     FL M+R       ++F+     ++SL  +   +SH       +H+L LK  L
Sbjct: 1043 SVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSL--SLHEVSH------QIHALVLKYCL 1094

Query: 132  HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFA 190
             D    G+AL+  Y +    +  +K+F  + E RD V + +MI G+  N  L  ++ +  
Sbjct: 1095 SDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVW 1154

Query: 191  DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
             M         +  +  L A A +A +E+   +H   + + ++ +V+VG+ L+D Y K G
Sbjct: 1155 FMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCG 1214

Query: 251  IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS-FLAV 309
             +  A R F E + + N  +WN+M++GYA+ G     L+LF  + + G  PD  +  L V
Sbjct: 1215 RIDYASRFF-ELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGV 1273

Query: 310  LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
            L+A  + G   E  +  + M   Y+L P +EH++C++  +GRAG+L++      +MP +P
Sbjct: 1274 LSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKP 1333

Query: 370  DAAVWRALLSFSA-IHGK-ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
            +  +WR +L      +G+  ++  +  + L+++ P +   YV++AN+ +   +W++VA+ 
Sbjct: 1334 NVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKA 1393

Query: 428  RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
            R  MK+  V+KE G SW+ +K  VHVF+AGD++H   + IY KL EL  +    GY+P  
Sbjct: 1394 RXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQT 1453

Query: 488  DEMLHNVGDREKREALWYHSEKLALAFGLV--SGAPRGKTLRIVKNLRICRDCHESFKYI 545
               L ++    K E L YHSEK+A+AF L   S  P    +RI+KNLR+C DCH +F YI
Sbjct: 1454 KYALFDLELENKEELLSYHSEKIAVAFVLTRQSALP----IRIMKNLRVCGDCHSAFGYI 1509

Query: 546  SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            S++V R+IV+RD NR+H F +G C+CGD W
Sbjct: 1510 SKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 150/306 (49%), Gaps = 16/306 (5%)

Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           LH  S+K       F  + L++ Y R     +A+K+FDE+  R++V +  +I G+ QN +
Sbjct: 566 LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 625

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV---IHGHAVVSGLDRNVIV 238
             ++ + F DM  +      Y    ALRA  E +    C++   IHG    +    +V+V
Sbjct: 626 PDEACARFRDMVRAGFIPNHYAFGSALRACQE-SGPSGCKLGVQIHGLISKTRYGSDVVV 684

Query: 239 GTGLIDGYGKA-GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
              LI  YG      +DAR VFD  + + NSI+WN++++ Y+++GD  +  +LF  ++  
Sbjct: 685 CNVLISMYGSCLDSANDARSVFDR-IGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKE 743

Query: 298 G----FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY---TCLISAMG 350
           G    F P+EY+F +++TA C++   G     +E+M  R +    L+     + L+S   
Sbjct: 744 GLGFSFKPNEYTFGSLITAACSSVDFGLCV--LEQMLARVEKSGFLQDLYVGSALVSGFA 801

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           R G  +DA+ I   M    +      L+       + + A+K+   + D+   +  +YV+
Sbjct: 802 RFGLTDDAKNIFEQMGVR-NVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVV 860

Query: 411 VANVLS 416
           + +  S
Sbjct: 861 LLSAFS 866



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 172/388 (44%), Gaps = 26/388 (6%)

Query: 10  QPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           Q    S + R +H +++K     +  + N LI  Y +   L  + +LF+ + + N+V+W 
Sbjct: 555 QGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWA 614

Query: 69  ALISAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA-SLSHAFLFGLSLHS 124
            LIS ++ +     +   F  M+R     F+PN     S  + C  S       G+ +H 
Sbjct: 615 CLISGYTQNGKPDEACARFRDMVR---AGFIPNHYAFGSALRACQESGPSGCKLGVQIHG 671

Query: 125 LSLKLSLHDKPFCGSALVHFY-SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
           L  K          + L+  Y S   S ++A+ VFD I  R+ + + ++I  +++    V
Sbjct: 672 LISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXV 731

Query: 184 DSLSVFADMRSSDVGSTM----YCVSGALRAAAELAAMEQCRVIHGHAVV--SGLDRNVI 237
            +  +F+ M+   +G +     Y     + AA        C +    A V  SG  +++ 
Sbjct: 732 SAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLY 791

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEM 296
           VG+ L+ G+ + G+  DA+ +F E + V N ++ N +M G  +Q       ++FH + ++
Sbjct: 792 VGSALVSGFARFGLTDDAKNIF-EQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDL 850

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC-----LISAMGR 351
            G   D  S++ +L+A     +  E  +    +   + +  GL          L++   +
Sbjct: 851 VGINSD--SYVVLLSAFSEFSVLEEGRRKGREVHA-HVIRTGLNDNKVAIGNGLVNMYAK 907

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLS 379
           +G + DA  +   M  E D+  W +L+S
Sbjct: 908 SGAIADACSVFELM-VEKDSVSWNSLIS 934



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 129/282 (45%), Gaps = 6/282 (2%)

Query: 101  TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD-KPFCGSALVHFYSRFRSPDNAKKVFD 159
             L S F   + L      G  +H+  ++  L+D K   G+ LV+ Y++  +  +A  VF+
Sbjct: 860  VLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFE 919

Query: 160  EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
             + E+D V + ++I G  QN    D+   F  MR +    + + +   L + A L  +  
Sbjct: 920  LMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIML 979

Query: 220  CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
               IH   +  GLD +V V   L+  Y + G  ++  +VF   +   + ++WN+++ G  
Sbjct: 980  GEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSL-MPEYDQVSWNSVI-GAL 1037

Query: 280  QQGDQSTVLELFHLLEMR--GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
               + S    + + LEM   G+     +F+ +L+A+ +  L   S + I  + ++Y L  
Sbjct: 1038 SDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQ-IHALVLKYCLSD 1096

Query: 338  GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
                   L+S  G+ G + + E+I   M    D   W +++S
Sbjct: 1097 DTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMIS 1138


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/559 (33%), Positives = 299/559 (53%), Gaps = 21/559 (3%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
           KS   D   Y  LI  Y+    +  + +LF+ IP  ++VSW A+IS ++   N   +L +
Sbjct: 194 KSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 253

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS---- 139
           F  M++    +  P++ T+ ++   CA  S +   G  +H     L + D  F  +    
Sbjct: 254 FKDMMK---TNVRPDESTMVTVVSACAQ-SGSIELGRQVH-----LWIDDHGFGSNLKIV 304

Query: 140 -ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
            AL+  YS+    + A  +F+ +  +DV+ +  +I G+   +   ++L +F +M  S   
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                +   L A A L A++  R IH +    + G+     + T LID Y K G +  A 
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           +VF+  L    S +WNAM+ G+A  G      +LF  +   G  PD+ +F+ +L+A  ++
Sbjct: 425 QVFNSILHKSLS-SWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G+          M   YK+ P LEHY C+I  +G +G  ++AE +   M  EPD  +W +
Sbjct: 484 GMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCS 543

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    +HG  ++     + LI I P +  +YV+++N+ +  GRW+EVA+ R ++ D+ +
Sbjct: 544 LLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 603

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S IE+   VH F+ GD+ H R  +IY  L E+    E+ G+VP   E+L  + +
Sbjct: 604 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEE 663

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K  AL +HSEKLA+AFGL+S  P G  L IVKNLR+CR+CHE+ K IS++ +REI+ R
Sbjct: 664 EWKEGALRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLISKIYKREIIAR 722

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F +G C+C D W
Sbjct: 723 DRTRFHHFRDGVCSCNDYW 741



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 208/463 (44%), Gaps = 66/463 (14%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNL------------LSYSLRLFNHIPSPNIVS 66
           RI+HA+ +K       ++N   TNY+ S L            L Y++ +F  I  PN++ 
Sbjct: 50  RIIHAQMIKIG-----LHN---TNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLI 101

Query: 67  WTALISAH--SNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           W  +   H  S+ P+S L +++ M+   +L  LPN  T   + K+CA  S AF  G  +H
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMI---SLGLLPNSYTFPFVLKSCAK-SKAFKEGQQIH 157

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRF-----------RSP--------------------D 152
              LKL      +  ++L+  Y +            +SP                    +
Sbjct: 158 GHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIE 217

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           NA+K+FDEI  +DVV + AMI G+A+     ++L +F DM  ++V      +   + A A
Sbjct: 218 NAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 277

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           +  ++E  R +H      G   N+ +   LID Y K G +  A  +F E L   + I+WN
Sbjct: 278 QSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF-ERLPYKDVISWN 336

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE-RMKV 331
            ++ GY         L LF  +   G  P++ + L++L A  + G A +  +WI   +  
Sbjct: 337 TLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG-AIDIGRWIHVYIDK 395

Query: 332 RYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
           R K +       T LI    + G +E A ++  ++      + W A++   A+HG+AD +
Sbjct: 396 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADAS 454

Query: 391 SKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
             +  R+  I I P DD  +V + +  S  G  D    + + M
Sbjct: 455 FDLFSRMRKIGIQP-DDITFVGLLSACSHSGMLDLGRHIFRTM 496



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 145/330 (43%), Gaps = 57/330 (17%)

Query: 86  SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF- 144
           S+  HP+LS L N +TL SL                +H+  +K+ LH+  +  S L+ F 
Sbjct: 30  SIRNHPSLSLLHNCKTLQSL--------------RIIHAQMIKIGLHNTNYALSKLIEFC 75

Query: 145 --YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
                F     A  VF  I+E +++ +  M  G A +S  V +L ++  M S  +    Y
Sbjct: 76  ILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSY 135

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLD----------------------------- 233
                L++ A+  A ++ + IHGH +  G D                             
Sbjct: 136 TFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS 195

Query: 234 --RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
             R+V+  T LI GY   G + +A+++FDE + V + ++WNAM++GYA+ G+    LELF
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDE-IPVKDVVSWNAMISGYAETGNYKEALELF 254

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
             +      PDE + + V++A   +G   L  +   WI+     +     L+    LI  
Sbjct: 255 KDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWID----DHGFGSNLKIVNALIDL 310

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             + G LE A  +   +P++ D   W  L+
Sbjct: 311 YSKCGELETACGLFERLPYK-DVISWNTLI 339


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/561 (31%), Positives = 301/561 (53%), Gaps = 6/561 (1%)

Query: 15   STDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
            S + +++    L+S      +   LI+ + +   L  +  +F+ +   ++VSWTA++SA 
Sbjct: 554  SQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSAT 613

Query: 75   SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            + +     +     R      +P++ TLA+   TC   S     G  +H+   ++ L   
Sbjct: 614  AENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLD-STTLGLGKIIHACVTEIGLEAD 672

Query: 135  PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
                +AL++ YS       A   F+ ++ RD+V +  M   +AQ     +++ +F  M+ 
Sbjct: 673  IAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQL 732

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
              V       S  L  +   A +   ++ HG A  SGLD +V V TGL+  Y K G + +
Sbjct: 733  EGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDE 792

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            A  +F         +  NA++   AQ G     +++F  ++  G  PD  + +++++A  
Sbjct: 793  AISLF-RGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACG 851

Query: 315  NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            +AG+  E       MK  + + P LEHY C +  +GRAG+LE AE+I   MPFE +  VW
Sbjct: 852  HAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVW 911

Query: 375  RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
             +LL    + G A++  +  +R+++++P++ +A+V+++N+    G+W +    RK + D+
Sbjct: 912  TSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKLLDQ 971

Query: 435  RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
             V+   G SW+E+  +VH F+AGDR H +T++IY  L +L     R GY    D+ L + 
Sbjct: 972  NVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLELLMRRAGYEA--DKGL-DA 1028

Query: 495  GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
             D  K +AL YHSE++A+AFGL++  P   TL+IVKNLR+C DCH + KYIS ++ REI+
Sbjct: 1029 EDELKEKALGYHSERIAIAFGLIA-TPPDTTLKIVKNLRVCGDCHTATKYISMIMGREII 1087

Query: 555  VRDVNRYHRFLNGSCTCGDLW 575
            VRD  R+H F NG+C+C D W
Sbjct: 1088 VRDSLRFHHFSNGTCSCKDCW 1108



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 157/355 (44%), Gaps = 20/355 (5%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS----PLSLNIFLSMLRH 90
           + N +I  Y+K      ++ +F  IP  ++VSWTA+  A++      P +L IF  ML  
Sbjct: 168 VGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQ 227

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
           P     PN  T  +    C SL      G  LHSL  +  L   P  G+AL++ Y +   
Sbjct: 228 P---LAPNVITFITALGACTSLRD----GTWLHSLLHEAGLGFDPLAGNALINMYGKCGD 280

Query: 151 PDNAKKVFDEI---RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV---GSTMYCV 204
            + A  VF  +   +E D+V + AMI    +  R  D++++F  +R   +     T+  +
Sbjct: 281 WEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITI 340

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
             AL  AA        R  HG    SG  R+V+VG  +I  Y K G  S A  VF     
Sbjct: 341 LNAL--AASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRW 398

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             + I+WN M+     +     V+  FH + + G  P++ SF+A+L A  N+       K
Sbjct: 399 KCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRK 458

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV-WRALL 378
               +  R +        T L+S  G+ G + +AE +   MP    + V W  +L
Sbjct: 459 IHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVML 513



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 143/292 (48%), Gaps = 16/292 (5%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           N LI  Y +   L  +  +F+ +   N+VSWTALISA++ S     +  +F +ML   + 
Sbjct: 64  NCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSA 123

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK----PFCGSALVHFYSRFR 149
           +  PN  TL ++   CA+ S     G S+H++  +L L  +       G+A+++ Y++  
Sbjct: 124 A--PNSYTLVAMLNACAN-SRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCG 180

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV-DSLSVFADMRSSDVGSTMYCVSGAL 208
           SP++A  VF  I E+DVV + AM   +AQ  R   D+L +F +M    +   +     AL
Sbjct: 181 SPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITAL 240

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VL 266
            A   L        +H     +GL  + + G  LI+ YGK G    A  VF    S   L
Sbjct: 241 GACTSL---RDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQEL 297

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           + ++WNAM++   + G     + +F  L + G  P+  + + +L AL  +G+
Sbjct: 298 DLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGV 349



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 129/302 (42%), Gaps = 14/302 (4%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           +L ++C   S+    G   H L     L    F G+ L++ Y R  S + A  +F ++ E
Sbjct: 30  ALLQSCVD-SNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEE 88

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           R+VV + A+I   AQ+     + ++F  M   S      Y +   L A A    +   R 
Sbjct: 89  RNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRS 148

Query: 223 IHGHAVVSGLDRN----VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           IH      GL+R      +VG  +I+ Y K G   DA  VF   +   + ++W AM   Y
Sbjct: 149 IHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVF-LTIPEKDVVSWTAMAGAY 207

Query: 279 AQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
           AQ+       L +F  + ++  AP+  +F+  L A C +   G    W+  +     L  
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGA-CTSLRDG---TWLHSLLHEAGLGF 263

Query: 338 GLEHYTCLISAMGRAGRLEDAERI--AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
                  LI+  G+ G  E A  +  AMA   E D   W A++S S   G+   A  + +
Sbjct: 264 DPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFR 323

Query: 396 RL 397
           RL
Sbjct: 324 RL 325



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 140/358 (39%), Gaps = 24/358 (6%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSP---NIVSWTALISAHSNSPLSLNIFLSMLRHPTL 93
           N LI  Y K      +  +F  + S    ++VSW A+ISA   +    +      R    
Sbjct: 269 NALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLE 328

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
              PN  TL ++    A+    F      H    +         G+A++  Y++      
Sbjct: 329 GMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSA 388

Query: 154 AKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           A  VF  IR + DV+ +  M+            ++ F  M  + +          L A +
Sbjct: 389 AWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACS 448

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVI---VGTGLIDGYGKAGIVSDARRVFDE-NLSVLNS 268
              A++  R IH  +++    R+ +   V T L+  YGK G +++A  VF E  L   + 
Sbjct: 449 NSEALDFGRKIH--SLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSL 506

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL-CNAGLAGESEKWIE 327
           + WN M+  YAQ             +   G  PD  SF +VL++  C+       E  + 
Sbjct: 507 VTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS------QEAQVL 560

Query: 328 RMKVRYKLEPGLEHY---TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
           RM +   LE G       T LIS  GR   LE A  +   M    D   W A++S +A
Sbjct: 561 RMCI---LESGYRSACLETALISMHGRCRELEQARSVFDEMD-HGDVVSWTAMVSATA 614


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 197/591 (33%), Positives = 309/591 (52%), Gaps = 53/591 (8%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +HA+ +++    D  + + L+  Y+KS     +  +FN +   N V+WT LIS    +  
Sbjct: 292 LHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGC 351

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S+ +F + +R   ++   +Q  LA+L   C S       G  LHSL LK        
Sbjct: 352 FTESVELF-NQMRAELMTL--DQFALATLISGCCS-RMDLCLGRQLHSLCLKSGQIQAVV 407

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  Y++  +  +A+ +F  + E+D+V + +MI  ++Q   +  +   F  M   +
Sbjct: 408 VSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKN 467

Query: 197 V------------------GSTMYCVSGA--------------LRAAAELAAMEQCRVIH 224
           V                  G  MY V  +               +  A+L A +    I 
Sbjct: 468 VITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQII 527

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           G  V  GL  +  V   +I  Y K G + +AR+VFD  L+V + ++WNAM+ GY+Q G  
Sbjct: 528 GRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFD-FLNVKDIVSWNAMITGYSQHGMG 586

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              +E+F  +  RG  PD  S++AVL+   ++GL  E + + + MK  + + PGLEH++C
Sbjct: 587 KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSC 646

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  +GRAG L +A+ +   MP +P A VW ALLS   IHG  ++A    K + +++  D
Sbjct: 647 MVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD 706

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
             +Y+++A + +  G+ D+ A++RK+M+D+ ++K  G SW+EV  KVHVF A D  H + 
Sbjct: 707 SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQV 766

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
             I  KL ELME+  RLGYV           D  + E   +HSEKLA+AFGL++  P   
Sbjct: 767 LAIRKKLDELMEKIARLGYVRT---------DSTRSEI--HHSEKLAVAFGLMT-LPTWM 814

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + I+KNLRIC DCH   K IS V  RE V+RD  R+H F  GSC+CGD W
Sbjct: 815 PIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 179/420 (42%), Gaps = 52/420 (12%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N+++  Y K+  + ++L LF+ +P  ++VSW  ++SA S S         ++   +    
Sbjct: 208 NSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 267

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
            +  T  S    CA LS +  +G  LH+  ++   H  P+  SALV  Y++      AK 
Sbjct: 268 LDSTTYTSSLTACARLS-SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 326

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF+ + +R+ V +  +I GF Q     +S+ +F  MR+  +    + ++  +        
Sbjct: 327 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 217 MEQCRVIHGHAVVSGLDRNVIVG-------------------------------TGLIDG 245
           +   R +H   + SG  + V+V                                T +I  
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 446

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDEY 304
           Y + G V+ AR  FD  +S  N I WNAM+  Y Q G +   L ++ ++    +  PD  
Sbjct: 447 YSQVGNVAKAREFFD-GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWV 505

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +++ +     + G     ++ I R  V+  L         +I+   + GR+ +A ++   
Sbjct: 506 TYVTLFKGCADLGANKLGDQIIGR-TVKVGLIIDTSVANAVITMYSKCGRILEARKVFDF 564

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD-------SAYVIVANVLSG 417
           +  + D   W A+++  + HG       MGK+ I+I  +DD         Y+    VLSG
Sbjct: 565 LNVK-DIVSWNAMITGYSQHG-------MGKQAIEI--FDDILKRGAKPDYISYVAVLSG 614



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 175/380 (46%), Gaps = 44/380 (11%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP---LSLNIFLSMLRHPT 92
           +N ++  Y+K   LS ++ LF  +P+ ++ SW  L+S +  S    +SL  FLSM  H +
Sbjct: 74  HNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSM--HRS 131

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
               PN  TLA   K+C +L    L  L L ++  K    D     +ALV  + R  + D
Sbjct: 132 GDSWPNAFTLACAMKSCGALGWHSL-ALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 190

Query: 153 NAKKVFDEIRERDVVCYGAMIVGF-------------------------------AQNSR 181
            A ++F  I+E  + C  +M+ G+                               +Q+ R
Sbjct: 191 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 182 LVDSLSVFADMRSSDV--GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
           + ++L +  DM+S  V   ST Y  + +L A A L+++   + +H   + +    +  V 
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTY--TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA 308

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           + L++ Y K+G   +A+ VF+ +L   N++AW  +++G+ Q G  +  +ELF+ +     
Sbjct: 309 SALVELYAKSGCFKEAKGVFN-SLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELM 367

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
             D+++ LA L + C + +     + +  + ++      +     LIS   +   L+ AE
Sbjct: 368 TLDQFA-LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 426

Query: 360 RIAMAMPFEPDAAVWRALLS 379
            I   M  E D   W ++++
Sbjct: 427 AIFRFMN-EKDIVSWTSMIT 445



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 155/360 (43%), Gaps = 47/360 (13%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           R +H+  LKS Q    + +N LI+ Y+K + L  +  +F  +   +IVSWT++I+A+S  
Sbjct: 391 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQV 450

Query: 76  -NSPLSLNIFLSMLRHPTLSF-----------------------------LPNQRTLASL 105
            N   +   F  M     +++                              P+  T  +L
Sbjct: 451 GNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTL 510

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
           FK CA L  A   G  +   ++K+ L       +A++  YS+      A+KVFD +  +D
Sbjct: 511 FKGCADLG-ANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI-- 223
           +V + AMI G++Q+     ++ +F D+               L   +    +++ +    
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 629

Query: 224 ---HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
                H +  GL+      + ++D  G+AG +++A+ + D+      +  W A+++    
Sbjct: 630 MMKRAHNISPGLEHF----SCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKI 685

Query: 281 QGDQSTV-LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR-YKLEPG 338
            G+     L   H+ E+   +PD  S++ +     +AG + +S +  + M+ +  K  PG
Sbjct: 686 HGNNELAELAAKHVFELD--SPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPG 743



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 25/203 (12%)

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           ALR+     A+   R +HG  V  GL   V +   L+  Y   G +SDARR+   +++  
Sbjct: 10  ALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHP 69

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP---------DEYSFLAVLTALCNAG 317
           N I  N M+ GYA+ G  S  +ELF  +  R  A              +L  L    +  
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA-ERIAMAMPF--EPDAAVW 374
            +G+S  W           P      C + + G  G    A + +AM   F  + D+ V 
Sbjct: 130 RSGDS--W-----------PNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVA 176

Query: 375 RALLSFSAIHGKADMASKMGKRL 397
            AL+      G  D+AS++  R+
Sbjct: 177 AALVDMFVRCGAVDLASRLFVRI 199



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 38/243 (15%)

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF-DEIRERDVVCYGAMIVGFAQNSR 181
           H   + + L    F  + L+H Y    +  +A+++   +I   +V+ +  M+ G+A+  R
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL-----------------------AAME 218
           L D++ +F  M + DV S    +SG  ++   L                        AM+
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 219 QCRVIHGH-------AVVSGLDR--NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
            C  +  H       A+V   D   +  V   L+D + + G V  A R+F   +      
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF-VRIKEPTMF 205

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
             N+M+AGY +       LELF  +  R    D  S+  +++AL  +G   E+   +  M
Sbjct: 206 CRNSMLAGYVKTYGVDHALELFDSMPER----DVVSWNMMVSALSQSGRVREALDMVVDM 261

Query: 330 KVR 332
           + +
Sbjct: 262 QSK 264


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 190/594 (31%), Positives = 307/594 (51%), Gaps = 44/594 (7%)

Query: 22  HAR-ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNS 77
           HA+  L   Q +  +   ++  Y+ S  L  ++ +F+ I +P+ + + ++I A   H   
Sbjct: 100 HAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXX 159

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                   +  R   L  L +  TL  + K+CA LS   + G  +H   L++ L    + 
Sbjct: 160 XXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCM-GRCVHGQGLRVGLEGDFYV 218

Query: 138 GSALVHFYSRFRSPDNAKKVFDEI-------------------------------RERDV 166
           G++L+  Y +     +A+K+FD++                                 R++
Sbjct: 219 GASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNI 278

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADM--RSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
           V + AMI G+ QN     +L +F +M    S++      +   L A A+ AA+E+ R IH
Sbjct: 279 VSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIH 338

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD---ENLSVLNSIAWNAMMAGYAQQ 281
             A   GL  N  V T L   Y K   + +AR  FD   +N    N IAWN M+  YA  
Sbjct: 339 DFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGK--NLIAWNTMITAYASH 396

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
           G     + +F  +   G  PD  +F+ +L+   ++GL          M   + +EP +EH
Sbjct: 397 GCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEH 456

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
           Y C++  +GRAGRL +A+ +   MP +   +VW ALL+    H   ++A    +RL  + 
Sbjct: 457 YACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLE 516

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMH 461
           P +   YV+++N+ +  G W+EV ++R ++K + ++K  G SWIE+ GK H+F+  D+ H
Sbjct: 517 PDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSH 576

Query: 462 ERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAP 521
            + ++IY  L  L E+ +  GY+P    +LH++ + EK   L  HSEKLA+AFGL++  P
Sbjct: 577 PQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRP 636

Query: 522 RGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            G  LR+ KNLRIC DCH + K+IS++ EREI+VRD+NR+H F +GSC+CGD W
Sbjct: 637 -GVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 156/337 (46%), Gaps = 22/337 (6%)

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKLSLHDKPFCG 138
           SLN+ L +L  P L   P+  + A +F+      H F+  G   H+  +   L    F  
Sbjct: 58  SLNLQLRILLQPILQHFPHPSSYAPIFQFLTR--HNFIKLGQQAHAQIVLHGLQPNAFLA 115

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS---RLVDSLSVFADMRSS 195
           + +V  Y+     D+A  VFD I     + Y ++I  + ++         L  +A M   
Sbjct: 116 AKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFL 175

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +    + +   L++ A+L+ +   R +HG  +  GL+ +  VG  LID Y K G++ DA
Sbjct: 176 GLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDA 235

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R++FD+ + V +  +WNA++AGY ++G+     +LF  +E R       S+ A+++    
Sbjct: 236 RKLFDK-MIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIV----SWTAMISGYTQ 290

Query: 316 AGLAGESEKWIERM-KVRYKLEPGLEHYTCLISAMGRAGRLEDAERI---AMAMPFEPDA 371
            G A ++    + M +   +++P       ++ A  ++  LE   RI   A  +    ++
Sbjct: 291 NGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNS 350

Query: 372 AVWRALLS-----FSAIHGKA--DMASKMGKRLIDIN 401
           +V  AL       +S +  +   DM ++ GK LI  N
Sbjct: 351 SVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWN 387


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 185/562 (32%), Positives = 300/562 (53%), Gaps = 18/562 (3%)

Query: 19  RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           RI  AR L      + +    N+I+ Y +   L+ +  LF+ +P  N++SWT +IS +  
Sbjct: 155 RIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQ 214

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLS-LKLSLHDKP 135
                N  + + R      +P +  +     +  ++   +  G  +   S L  ++  K 
Sbjct: 215 -----NGQVDVARK-LFEVMPEKNEV-----SWTAMLMGYTQGGRIEEASELFDAMPVKA 263

Query: 136 FCG-SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
               +A++  + +      A++VFD+IRE+D   + AMI  + +    V++L++FA M+ 
Sbjct: 264 VVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQR 323

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V S    +   L   A LA+++  R +H   V S  D +V V + LI  Y K G +  
Sbjct: 324 EGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVK 383

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           AR++FD   S  + + WN+++ GYAQ G     L++FH +   G A D  +F+ VL+A  
Sbjct: 384 ARQIFD-RFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACS 442

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
             G   E  +  E MK +Y +EP  EHY C++  +GRAG + DA  +   MP E DA +W
Sbjct: 443 YTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIW 502

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL     H   ++A    K+L+ + P +   Y++++N+ +  GRW +VAE+R+ M+ +
Sbjct: 503 GALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVK 562

Query: 435 RVRKEGGRSWIEVKGKVHVFLAG-DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           +V K  G SWIEV+ +VH+F  G    H     I   L +L       GY P    +LH+
Sbjct: 563 KVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHD 622

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + EK  +L +HSE+LA+AFGL+   P G  +R++KNLR+C DCH + K I+++  REI
Sbjct: 623 VDEEEKVRSLGHHSERLAVAFGLLK-VPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREI 681

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD NR+H F +G C+C D W
Sbjct: 682 ILRDANRFHHFKDGFCSCRDYW 703



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 189/426 (44%), Gaps = 37/426 (8%)

Query: 18  PRIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           PR   AR L     +R+   +N LI+ Y K+ ++S + + F+ +P  N+VSWTA++  + 
Sbjct: 63  PR--EARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYV 120

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
              L         + P  + +     L  L +         LF +        + + D  
Sbjct: 121 QEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDI--------MPVKD-V 171

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RS 194
              + ++  Y +      A+++FDE+  R+V+ +  MI G+ QN ++  +  +F  M   
Sbjct: 172 VARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK 231

Query: 195 SDVGSTM----YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           ++V  T     Y   G +  A+EL      +              V+    +I G+G+ G
Sbjct: 232 NEVSWTAMLMGYTQGGRIEEASELFDAMPVKA-------------VVACNAMILGFGQNG 278

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            V+ AR+VFD+ +   +   W+AM+  Y ++G +   L LF L++  G   +  S ++VL
Sbjct: 279 EVAKARQVFDQ-IREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVL 337

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP- 369
           + +C +  + +  + +    V+ + +  +   + LI+   + G L  A +I     F P 
Sbjct: 338 S-VCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDR--FSPK 394

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVAEVR 428
           D  +W ++++  A HG  + A ++   +       D   +V V +  S  G+  E  E+ 
Sbjct: 395 DIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIF 454

Query: 429 KVMKDR 434
           + MK +
Sbjct: 455 ESMKSK 460



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 149/346 (43%), Gaps = 65/346 (18%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNSPLSLN-IFLSMLRHPT 92
           YN+ I  Y++   +  + R+F+ +P   IVSW ++++ +  +N P     +F  M    T
Sbjct: 19  YNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNT 78

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
           +S+                                           + L+  Y + R   
Sbjct: 79  VSW-------------------------------------------NGLISGYVKNRMVS 95

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
            A+K FD + ER+VV + AM+ G+ Q   + ++ ++F  M   +V S    + G +    
Sbjct: 96  EARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLI---- 151

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           ++  +++ R +     V    ++V+  T +I GY + G +++AR +FDE +   N I+W 
Sbjct: 152 QVRRIDEARGLFDIMPV----KDVVARTNMISGYCQEGRLAEARELFDE-MPRRNVISWT 206

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
            M++GY Q G      +LF ++  +    +E S+ A+L      G   E+ +  + M V+
Sbjct: 207 TMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYTQGGRIEEASELFDAMPVK 262

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
                 +     +I   G+ G +  A ++   +  E D   W A++
Sbjct: 263 -----AVVACNAMILGFGQNGEVAKARQVFDQIR-EKDDGTWSAMI 302



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 145/311 (46%), Gaps = 31/311 (9%)

Query: 136 FCGSALVHF------YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
           +C S  + +      Y+R    ++A++VFDE+ ++ +V + +M+ G+ QN+R  ++  +F
Sbjct: 11  YCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLF 70

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
             M   +  S    +SG ++      A +        A  +  +RNV+  T ++ GY + 
Sbjct: 71  DKMPERNTVSWNGLISGYVKNRMVSEARK--------AFDTMPERNVVSWTAMVRGYVQE 122

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G+VS+A  +F + +   N ++W  M+ G  Q         LF ++ ++    D  +   +
Sbjct: 123 GLVSEAETLFWQ-MPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVK----DVVARTNM 177

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           ++  C  G   E+ +  + M  R  +      +T +IS   + G+++ A ++   MP E 
Sbjct: 178 ISGYCQEGRLAEARELFDEMPRRNVIS-----WTTMISGYVQNGQVDVARKLFEVMP-EK 231

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           +   W A+L      G+ + AS+    L D  P    A V    ++ G G+  EVA+ R+
Sbjct: 232 NEVSWTAMLMGYTQGGRIEEASE----LFDAMPV--KAVVACNAMILGFGQNGEVAKARQ 285

Query: 430 VMKDRRVRKEG 440
           V    R + +G
Sbjct: 286 VFDQIREKDDG 296


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 197/591 (33%), Positives = 308/591 (52%), Gaps = 53/591 (8%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +HA+ +++    D  + + L+  Y+K      +  +FN +   N V+WT LI+    H  
Sbjct: 292 LHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGC 351

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S+ +F + +R   ++   +Q  LA+L   C S       G  LHSL LK        
Sbjct: 352 FTESVELF-NQMRAELMTL--DQFALATLISGCCS-RMDLCLGRQLHSLCLKSGQIQAVV 407

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  Y++  +  +A+ +F  + E+D+V + +MI   +Q   +  +   F  M + +
Sbjct: 408 VSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKN 467

Query: 197 V------------------GSTMYCVSGA--------------LRAAAELAAMEQCRVIH 224
           V                  G  MY V  +               +  A+L A +    I 
Sbjct: 468 VITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQII 527

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           G  V  GL  +  V   +I  Y K G + +AR+VFD  L+V + ++WNAM+ GY+Q G  
Sbjct: 528 GRTVKVGLILDTSVANAVITMYSKCGRILEARKVFD-FLNVKDIVSWNAMITGYSQHGMG 586

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              +E+F  +  RG  PD  S++AVL+   ++GL  E + + + MK  + + PGLEH++C
Sbjct: 587 KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSC 646

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  +GRAG L +A+ +   MP +P A VW ALLS   IHG  ++A    K + +++  D
Sbjct: 647 MVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD 706

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
             +Y+++A + +  G+ D+ A++RK+M+D+ ++K  G SW+EV  KVHVF A D  H + 
Sbjct: 707 SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQV 766

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
             I  KL ELME+  RLGYV           D  + E   +HSEKLA+AFGL+S  P   
Sbjct: 767 IAIRKKLDELMEKIARLGYVRT---------DSPRSEI--HHSEKLAVAFGLMS-LPAWM 814

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + I+KNLRIC DCH   K IS V  RE V+RD  R+H F  GSC+CGD W
Sbjct: 815 PIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 113/501 (22%), Positives = 208/501 (41%), Gaps = 74/501 (14%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N+++  Y K+  + ++L LF+ +P  ++VSW  ++SA S S         ++   +    
Sbjct: 208 NSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 267

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
            +  T  S    CA LS +  +G  LH+  ++      P+  SALV  Y++      AK 
Sbjct: 268 LDSTTYTSSLTACARLS-SLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF+ + +R+ V +  +I GF Q+    +S+ +F  MR+  +    + ++  +        
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA--------------------------- 249
           +   R +H   + SG  + V+V   LI  Y K                            
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITA 446

Query: 250 ----GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEY 304
               G ++ AR  FD  +S  N I WNAM+  Y Q G +   L +++ +L  +   PD  
Sbjct: 447 HSQVGNIAKAREFFD-GMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWV 505

Query: 305 SFLAVLTALCNAGLAGESEKWIER-MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
           +++ +     + G     ++ I R +KV   L+  + +   +I+   + GR+ +A ++  
Sbjct: 506 TYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVAN--AVITMYSKCGRILEARKVFD 563

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD-------SAYVIVANVLS 416
            +  + D   W A+++  + HG       MGK+ I+I  +DD         Y+    VLS
Sbjct: 564 FLNVK-DIVSWNAMITGYSQHG-------MGKQAIEI--FDDILKRGAKPDYISYVAVLS 613

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
           G      V E              G+S+ ++  +VH    G        D+  +   L E
Sbjct: 614 GCSHSGLVQE--------------GKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTE 659

Query: 477 ECERLGYVP------VWDEML 491
             + +  +P      VW  +L
Sbjct: 660 AKDLIDEMPMKPTAEVWGALL 680



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 171/380 (45%), Gaps = 44/380 (11%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP---LSLNIFLSMLRHPT 92
           +N ++  Y K   LS ++ LF  +P+ ++ SW  L+S +  S     SL  F+SM R   
Sbjct: 74  HNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGD 133

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
            S  PN  T A   K+C +L    L  L L  +  K    D     +ALV  + R  + D
Sbjct: 134 SS--PNAFTFAYAMKSCGALGERSL-ALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVD 190

Query: 153 NAKKVFDEIRERDVVCYGAMIVGF-------------------------------AQNSR 181
            A ++F  I+E  + C  +M+VG+                               +Q+ R
Sbjct: 191 LASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 182 LVDSLSVFADMRSSDV--GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
           + ++L +  DM+S  V   ST Y  + +L A A L+++   + +H   + +    +  V 
Sbjct: 251 VREALDMVVDMQSKGVRLDSTTY--TSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVA 308

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           + L++ Y K G   +A+ VF+ +L   N++AW  ++AG+ Q G  +  +ELF+ +     
Sbjct: 309 SALVELYAKCGCFKEAKGVFN-SLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELM 367

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
             D+++ LA L + C + +     + +  + ++      +     LIS   +   L+ AE
Sbjct: 368 TLDQFA-LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 426

Query: 360 RIAMAMPFEPDAAVWRALLS 379
            I   M  E D   W ++++
Sbjct: 427 SIFRFMN-EKDIVSWTSMIT 445



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 157/362 (43%), Gaps = 51/362 (14%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           R +H+  LKS Q    + +N LI+ Y+K + L  +  +F  +   +IVSWT++I+AHS  
Sbjct: 391 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQV 450

Query: 76  ---------------------NSPL-----------SLNIFLSMLRHPTLSFLPNQRTLA 103
                                N+ L            L ++  ML    +   P+  T  
Sbjct: 451 GNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVR--PDWVTYV 508

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           +LFK CA L  A   G  +   ++K+ L       +A++  YS+      A+KVFD +  
Sbjct: 509 TLFKGCADLG-ANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNV 567

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           +D+V + AMI G++Q+     ++ +F D+               L   +    +++ +  
Sbjct: 568 KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSY 627

Query: 224 HG-----HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
                  H +  GL+      + ++D  G+AG +++A+ + DE      +  W A+++  
Sbjct: 628 FDMMKRVHNISPGLEHF----SCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSAC 683

Query: 279 AQQGDQSTV-LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR-YKLE 336
              G+     L   H+ E+   +PD  S++ +     +AG + +S +  + M+ +  K  
Sbjct: 684 KIHGNNELAELAAKHVFELD--SPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKN 741

Query: 337 PG 338
           PG
Sbjct: 742 PG 743



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 25/203 (12%)

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           ALR+     A+   R +HG  V  GL   V +   L+  Y   G + DARR+   +++  
Sbjct: 10  ALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHP 69

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP---------DEYSFLAVLTALCNAG 317
           N I  N M+ GY + G  S  +ELF  +  R  A              +LA L +  +  
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA-ERIAMAMPF--EPDAAVW 374
            +G+S              P    +   + + G  G    A + + M   F  + D+ V 
Sbjct: 130 RSGDS-------------SPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVA 176

Query: 375 RALLSFSAIHGKADMASKMGKRL 397
            AL+      G  D+AS++  R+
Sbjct: 177 AALVDMFVRCGTVDLASRLFVRI 199


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 197/591 (33%), Positives = 309/591 (52%), Gaps = 53/591 (8%)

Query: 21  VHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +HA+ +++    D  + + L+  Y+KS     +  +FN +   N V+WT LIS    +  
Sbjct: 312 LHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGC 371

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              S+ +F + +R   ++   +Q  LA+L   C S       G  LHSL LK        
Sbjct: 372 FTESVELF-NQMRAELMTL--DQFALATLISGCCS-RMDLCLGRQLHSLCLKSGQIQAVV 427

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  Y++  +  +A+ +F  + E+D+V + +MI  ++Q   +  +   F  M   +
Sbjct: 428 VSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKN 487

Query: 197 V------------------GSTMYCVSGA--------------LRAAAELAAMEQCRVIH 224
           V                  G  MY V  +               +  A+L A +    I 
Sbjct: 488 VITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQII 547

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           G  V  GL  +  V   +I  Y K G + +AR+VFD  L+V + ++WNAM+ GY+Q G  
Sbjct: 548 GRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFD-FLNVKDIVSWNAMITGYSQHGMG 606

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              +E+F  +  RG  PD  S++AVL+   ++GL  E + + + MK  + + PGLEH++C
Sbjct: 607 KQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSC 666

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  +GRAG L +A+ +   MP +P A VW ALLS   IHG  ++A    K + +++  D
Sbjct: 667 MVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPD 726

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
             +Y+++A + +  G+ D+ A++RK+M+D+ ++K  G SW+EV  KVHVF A D  H + 
Sbjct: 727 SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQV 786

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
             I  KL ELME+  RLGYV           D  + E   +HSEKLA+AFGL++  P   
Sbjct: 787 LAIRKKLDELMEKIARLGYVRT---------DSTRSEI--HHSEKLAVAFGLMT-LPTWM 834

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + I+KNLRIC DCH   K IS V  RE V+RD  R+H F  GSC+CGD W
Sbjct: 835 PIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 179/420 (42%), Gaps = 52/420 (12%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N+++  Y K+  + ++L LF+ +P  ++VSW  ++SA S S         ++   +    
Sbjct: 228 NSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 287

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
            +  T  S    CA LS +  +G  LH+  ++   H  P+  SALV  Y++      AK 
Sbjct: 288 LDSTTYTSSLTACARLS-SLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 346

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF+ + +R+ V +  +I GF Q     +S+ +F  MR+  +    + ++  +        
Sbjct: 347 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 406

Query: 217 MEQCRVIHGHAVVSGLDRNVIVG-------------------------------TGLIDG 245
           +   R +H   + SG  + V+V                                T +I  
Sbjct: 407 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 466

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDEY 304
           Y + G V+ AR  FD  +S  N I WNAM+  Y Q G +   L ++ ++    +  PD  
Sbjct: 467 YSQVGNVAKAREFFD-GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWV 525

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +++ +     + G     ++ I R  V+  L         +I+   + GR+ +A ++   
Sbjct: 526 TYVTLFKGCADLGANKLGDQIIGR-TVKVGLIIDTSVANAVITMYSKCGRILEARKVFDF 584

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD-------SAYVIVANVLSG 417
           +  + D   W A+++  + HG       MGK+ I+I  +DD         Y+    VLSG
Sbjct: 585 LNVK-DIVSWNAMITGYSQHG-------MGKQAIEI--FDDILKRGAKPDYISYVAVLSG 634



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 175/380 (46%), Gaps = 44/380 (11%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP---LSLNIFLSMLRHPT 92
           +N ++  Y+K   LS ++ LF  +P+ ++ SW  L+S +  S    +SL  FLSM  H +
Sbjct: 94  HNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSM--HRS 151

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
               PN  TLA   K+C +L    L  L L ++  K    D     +ALV  + R  + D
Sbjct: 152 GDSWPNAFTLACAMKSCGALGWHSL-ALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVD 210

Query: 153 NAKKVFDEIRERDVVCYGAMIVGF-------------------------------AQNSR 181
            A ++F  I+E  + C  +M+ G+                               +Q+ R
Sbjct: 211 LASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 270

Query: 182 LVDSLSVFADMRSSDV--GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
           + ++L +  DM+S  V   ST Y  + +L A A L+++   + +H   + +    +  V 
Sbjct: 271 VREALDMVVDMQSKGVRLDSTTY--TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVA 328

Query: 240 TGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299
           + L++ Y K+G   +A+ VF+ +L   N++AW  +++G+ Q G  +  +ELF+ +     
Sbjct: 329 SALVELYAKSGCFKEAKGVFN-SLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELM 387

Query: 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
             D+++ LA L + C + +     + +  + ++      +     LIS   +   L+ AE
Sbjct: 388 TLDQFA-LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 446

Query: 360 RIAMAMPFEPDAAVWRALLS 379
            I   M  E D   W ++++
Sbjct: 447 AIFRFMN-EKDIVSWTSMIT 465



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 155/360 (43%), Gaps = 47/360 (13%)

Query: 19  RIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
           R +H+  LKS Q    + +N LI+ Y+K + L  +  +F  +   +IVSWT++I+A+S  
Sbjct: 411 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQV 470

Query: 76  -NSPLSLNIFLSMLRHPTLSF-----------------------------LPNQRTLASL 105
            N   +   F  M     +++                              P+  T  +L
Sbjct: 471 GNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTL 530

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
           FK CA L  A   G  +   ++K+ L       +A++  YS+      A+KVFD +  +D
Sbjct: 531 FKGCADLG-ANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 589

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI-- 223
           +V + AMI G++Q+     ++ +F D+               L   +    +++ +    
Sbjct: 590 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 649

Query: 224 ---HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
                H +  GL+      + ++D  G+AG +++A+ + D+      +  W A+++    
Sbjct: 650 MMKRAHNISPGLEHF----SCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKI 705

Query: 281 QGDQSTV-LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR-YKLEPG 338
            G+     L   H+ E+   +PD  S++ +     +AG + +S +  + M+ +  K  PG
Sbjct: 706 HGNNELAELAAKHVFELD--SPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPG 763



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 25/203 (12%)

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           ALR+     A+   R +HG  V  GL   V +   L+  Y   G +SDARR+   +++  
Sbjct: 30  ALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHP 89

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP---------DEYSFLAVLTALCNAG 317
           N I  N M+ GYA+ G  S  +ELF  +  R  A              +L  L    +  
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA-ERIAMAMPF--EPDAAVW 374
            +G+S  W           P      C + + G  G    A + +AM   F  + D+ V 
Sbjct: 150 RSGDS--W-----------PNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVA 196

Query: 375 RALLSFSAIHGKADMASKMGKRL 397
            AL+      G  D+AS++  R+
Sbjct: 197 AALVDMFVRCGAVDLASRLFVRI 219



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 38/243 (15%)

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF-DEIRERDVVCYGAMIVGFAQNSR 181
           H   + + L    F  + L+H Y    +  +A+++   +I   +V+ +  M+ G+A+  R
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL-----------------------AAME 218
           L D++ +F  M + DV S    +SG  ++   L                        AM+
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 219 QCRVIHGH-------AVVSGLDR--NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
            C  +  H       A+V   D   +  V   L+D + + G V  A R+F   +      
Sbjct: 167 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLF-VRIKEPTMF 225

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
             N+M+AGY +       LELF  +  R    D  S+  +++AL  +G   E+   +  M
Sbjct: 226 CRNSMLAGYVKTYGVDHALELFDSMPER----DVVSWNMMVSALSQSGRVREALDMVVDM 281

Query: 330 KVR 332
           + +
Sbjct: 282 QSK 284


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 187/566 (33%), Positives = 311/566 (54%), Gaps = 19/566 (3%)

Query: 19  RIVHARALKS--SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R VH+  +K+  S+ DR   N L+  YSK   L  +  +F  +   ++VS+T++I+ ++ 
Sbjct: 316 RAVHSIGVKACFSREDR-FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 374

Query: 77  SPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
             L+   + +F  M         P+  T+ ++   CA        G  +H    +  L  
Sbjct: 375 EGLAGEAVKLFEEMEEE---GISPDVYTVTAVLNCCARY-RLLDEGKRVHEWIKENDLGF 430

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF---- 189
             F  +AL+  Y++  S   A+ VF E+R +D++ +  +I G+++N    ++LS+F    
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490

Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
            + R S    T+ CV   L A A L+A ++ R IHG+ + +G   +  V   L+D Y K 
Sbjct: 491 EEKRFSPDERTVACV---LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547

Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
           G +  A  +FD+ ++  + ++W  M+AGY   G     + LF+ +   G   DE SF+++
Sbjct: 548 GALLLAHMLFDD-IASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSL 606

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           L A  ++GL  E  ++   M+   K+EP +EHY C++  + R G L  A R    MP  P
Sbjct: 607 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPP 666

Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
           DA +W ALL    IH    +A K+ +++ ++ P +   YV++AN+ +   +W++V  +RK
Sbjct: 667 DATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRK 726

Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
            +  R +RK  G SWIE+KG+V++F+AGD  +  TE+I   L ++       GY P+   
Sbjct: 727 RIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKY 786

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
            L +  + EK EAL  HSEKLA+A G++S +  GK +R+ KNLR+C DCHE  K++S++ 
Sbjct: 787 ALIDAEEMEKEEALCGHSEKLAMALGIIS-SGHGKIIRVTKNLRVCGDCHEMAKFMSKLT 845

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
            REIV+RD NR+H+F +G C+C   W
Sbjct: 846 RREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 163/353 (46%), Gaps = 16/353 (4%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSML 88
           D ++ + L   Y+    L  + R+F+ +     + W  L++  + S     S+ +F  M+
Sbjct: 128 DSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM 187

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
              +     +  T + + K+ +SL  +   G  LH   LK    ++   G++LV FY + 
Sbjct: 188 ---SSGVEMDSYTFSCVSKSFSSL-RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKN 243

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           +  D+A+KVFDE+ ERDV+ + ++I G+  N      LSVF  M  S +   +  +    
Sbjct: 244 QRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVF 303

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
              A+   +   R +H   V +   R       L+D Y K G +  A+ VF E +S  + 
Sbjct: 304 AGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFRE-MSDRSV 362

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK---W 325
           +++ +M+AGYA++G     ++LF  +E  G +PD Y+  AVL       L  E ++   W
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW 422

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           I+   + + +         L+    + G +++AE +   M  + D   W  ++
Sbjct: 423 IKENDLGFDIFVS----NALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 470


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 180/556 (32%), Positives = 298/556 (53%), Gaps = 7/556 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH   +K+   A+ S+ N+LI  +S       +  +F+ +   ++VSWTA+IS +  +
Sbjct: 316 REVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKN 375

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L      +         +P++ T+AS+   CA L      G+ LH  + +  L      
Sbjct: 376 GLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLG-LLDKGIMLHEFADRTGLTSYVIV 434

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  YS+ R  D A +VF  I  ++V+ + ++I+G   N R  ++L  F  M  S  
Sbjct: 435 ANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLK 494

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +++  VS  L A A + A+   + IH HA+ +GL  +  +   L+D Y + G +  A  
Sbjct: 495 PNSVTLVS-VLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWN 553

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            F  N    +  +WN ++ GYAQQG     +ELFH +      PDE +F ++L A   +G
Sbjct: 554 QF--NSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  +  ++ E M+ ++ + P L+HY  ++  +GRAGRLEDA      MP +PD A+W AL
Sbjct: 612 MVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGAL 671

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L+   I+   ++     + + +++      Y+++ N+ +  G+WDEVA VRK+M++ R+ 
Sbjct: 672 LNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLT 731

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
            + G SW+EV G+VH FL GD  H + ++I   L    E+ E  G     D    ++ D 
Sbjct: 732 VDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDI-DA 790

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            K E    HSE+LA+AFGL++  P G  + + KNL +C +CH + K+IS+VV R I VRD
Sbjct: 791 SKAEIFCGHSERLAIAFGLINTVP-GTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRD 849

Query: 558 VNRYHRFLNGSCTCGD 573
             ++H F +G C+CGD
Sbjct: 850 TEQFHHFKDGVCSCGD 865



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 170/389 (43%), Gaps = 13/389 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH   ++   ++D  + N LIT Y K   +  +  +F+ +P  + +SW A+IS +  +
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            + L               P+  T+ S+   C +L    L G  +H   +K     +   
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERL-GREVHGYVIKTGFVAEVSV 333

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  +S     D A+ VF ++  +D+V + AMI G+ +N     ++  +  M    V
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 ++  L A A L  +++  ++H  A  +GL   VIV   LID Y K   +  A  
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALE 453

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF   +   N I+W +++ G          L  F  + +    P+  + ++VL+A    G
Sbjct: 454 VF-HRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIG 511

Query: 318 LAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            A    K I    +R  L  G + +    L+    R GR+E A     +   E D A W 
Sbjct: 512 -ALSCGKEIHAHALRTGL--GFDGFLPNALLDMYVRCGRMEPAWNQFNSC--EKDVASWN 566

Query: 376 ALLSFSAIHGKADMASKMGKRLI--DINP 402
            LL+  A  GK  +A ++  ++I  D+NP
Sbjct: 567 ILLTGYAQQGKGGLAVELFHKMIESDVNP 595



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%)

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  + RF     A  VF ++ ERD+  +  ++ G+A+     ++L+++  M    +
Sbjct: 132 GNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGI 191

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
              +Y     LR    L  + + R +H H +  G + +V V   LI  Y K G +  AR 
Sbjct: 192 RPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARL 251

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT---ALC 314
           VFD  +   + I+WNAM++GY +       L LF ++      PD  +  +V++   AL 
Sbjct: 252 VFDR-MPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +  L  E   ++  +K  +  E  + +   LI      G  ++AE +   M F+ D   W
Sbjct: 311 DERLGREVHGYV--IKTGFVAEVSVNN--SLIQMHSSVGCWDEAEMVFSKMEFK-DLVSW 365

Query: 375 RALLS 379
            A++S
Sbjct: 366 TAMIS 370


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 182/554 (32%), Positives = 296/554 (53%), Gaps = 11/554 (1%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNI 83
           +SS  D   Y  LIT Y+    +  + +LF+ IP  ++VSW A+IS ++ +     +L +
Sbjct: 124 RSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALEL 183

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
           F  M++   ++  P++ T  ++   CA  S +   G  +HS              +AL+ 
Sbjct: 184 FEEMMK---MNVRPDESTYVTVLSACAH-SGSIELGRQVHSWVDDHGFDSNLKIVNALID 239

Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
            YS+    + A  +F  +  +DV+ +  +I G+   +   ++L +F +M  S        
Sbjct: 240 LYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 299

Query: 204 VSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
           +   L A A L A++  R IH +    + G+     + T LID Y K G +  A +VF+ 
Sbjct: 300 MLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 359

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            L    S +WNAM+ G+A  G      +LF  +   G  PD+ +F+ +L+A  ++G+   
Sbjct: 360 MLHKSLS-SWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDL 418

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
                  M   YK+ P LEHY C+I  +G +G  ++AE +   M  EPD  +W +LL   
Sbjct: 419 GRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKAC 478

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
            +HG  ++A    + LI I P + S+Y++++N+ +  GRW++VA +R ++  + ++K  G
Sbjct: 479 KMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPG 538

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
            S IEV   V  F+ GD+ H +  +IY  L E+    E  G+VP   E+L  + +  K  
Sbjct: 539 CSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEG 598

Query: 502 ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
           AL +HSEKLA+AFGL+S  P G  L IVKNLR+CR+CHE+ K +S++ +REIV RD  R+
Sbjct: 599 ALRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRF 657

Query: 562 HRFLNGSCTCGDLW 575
           H F +G C+C D W
Sbjct: 658 HHFRDGVCSCNDYW 671



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 181/412 (43%), Gaps = 46/412 (11%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAH--SNSPLS-LNIFLSMLRHPTLSFLPNQRTLASL 105
           L Y+  +F  I  PN + W  +I  H  S+ P+S L +++ M+   +L  LPN  T   L
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMV---SLGLLPNSYTFPFL 70

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K+CA  S  F  G  +H   LKL      +  ++L+  Y +    ++A KVFD    RD
Sbjct: 71  LKSCAK-SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG------------------- 206
           VV Y A+I G+A    +  +  +F ++   DV S    +SG                   
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMK 189

Query: 207 ------------ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                        L A A   ++E  R +H      G D N+ +   LID Y K G V  
Sbjct: 190 MNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F + LS  + I+WN ++ GY         L LF  +   G  P++ + L+VL A  
Sbjct: 250 ACGLF-QGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACA 308

Query: 315 NAGLAGESEKWIE-RMKVRYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
           + G A +  +WI   +  R K +       T LI    + G +E A ++  +M      +
Sbjct: 309 HLG-AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLS 366

Query: 373 VWRALLSFSAIHGKADMASKMGKRL--IDINPYDDSAYVIVANVLSGVGRWD 422
            W A++   A+HG+AD +  +  R+  I I P DD  +V + +  S  G  D
Sbjct: 367 SWNAMIFGFAMHGRADASFDLFSRMRKIGIEP-DDITFVGLLSACSHSGMLD 417


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 307/563 (54%), Gaps = 13/563 (2%)

Query: 19  RIVHARALKS--SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R VH+  +K+  S+ DR   N L+  YSK   L  +  +F  +   ++VS+T++I+ ++ 
Sbjct: 165 RAVHSIGVKACFSREDR-FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 223

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             L+                P+  T+ ++   CA        G  +H    +  L    F
Sbjct: 224 EGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARY-RLLDEGKRVHEWIKENDLGFDIF 282

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF----ADM 192
             +AL+  Y++  S   A+ VF E+R +D++ +  +I G+++N    ++LS+F     + 
Sbjct: 283 VSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK 342

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R S    T+ CV   L A A L+A ++ R IHG+ + +G   +  V   L+D Y K G +
Sbjct: 343 RFSPDERTVACV---LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 399

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A  +FD +++  + ++W  M+AGY   G     + LF+ +   G   DE SF+++L A
Sbjct: 400 LLAHMLFD-DIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYA 458

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++GL  E  ++   M+   K+EP +EHY C++  + R G L  A R    MP  PDA 
Sbjct: 459 CSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDAT 518

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W ALL    IH    +A K+ +++ ++ P +   YV++AN+ +   +W++V  +RK + 
Sbjct: 519 IWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIG 578

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            R +RK  G SWIE+KG+V++F+AGD  +  TE+I   L ++       GY P+    L 
Sbjct: 579 QRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALI 638

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +  + EK EAL  HSEKLA+A G++S +  GK +R+ KNLR+C DCHE  K++S++  RE
Sbjct: 639 DAEEMEKEEALCGHSEKLAMALGIIS-SGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRRE 697

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           IV+RD NR+H+F +G C+C   W
Sbjct: 698 IVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 158/298 (53%), Gaps = 12/298 (4%)

Query: 21  VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LKS   +R S+ N+L+  Y K+  +  + ++F+ +   +++SW ++I+ + ++ L
Sbjct: 66  LHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGL 125

Query: 80  S---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL-HDKP 135
           +   L++F+ ML         +  T+ S+F  CA  S     G ++HS+ +K     +  
Sbjct: 126 AEKGLSVFVQML---VSGIEIDLATIVSVFAGCAD-SRLISLGRAVHSIGVKACFSREDR 181

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           FC + L+  YS+    D+AK VF E+ +R VV Y +MI G+A+     +++ +F +M   
Sbjct: 182 FCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +   +Y V+  L   A    +++ + +H     + L  ++ V   L+D Y K G + +A
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEYSFLAVLTA 312
             VF E + V + I+WN ++ GY++    +  L LF+ LLE + F+PDE +   VL A
Sbjct: 301 ELVFSE-MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 357



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 152/329 (46%), Gaps = 16/329 (4%)

Query: 56  FNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112
           F+ +     + W  L++  + S     S+ +F  M+   +     +  T + + K+ +SL
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM---SSGVEMDSYTFSCVSKSFSSL 57

Query: 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
             +   G  LH   LK    ++   G++LV FY + +  D+A+KVFDE+ ERDV+ + ++
Sbjct: 58  -RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSI 116

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           I G+  N      LSVF  M  S +   +  +       A+   +   R +H   V +  
Sbjct: 117 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 176

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
            R       L+D Y K G +  A+ VF E +S  + +++ +M+AGYA++G     ++LF 
Sbjct: 177 SREDRFCNTLLDMYSKCGDLDSAKAVFRE-MSDRSVVSYTSMIAGYAREGLAGEAVKLFE 235

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEK---WIERMKVRYKLEPGLEHYTCLISAM 349
            +E  G +PD Y+  AVL       L  E ++   WI+   + + +         L+   
Sbjct: 236 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS----NALMDMY 291

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALL 378
            + G +++AE +   M  + D   W  ++
Sbjct: 292 AKCGSMQEAELVFSEMRVK-DIISWNTII 319


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 176/549 (32%), Positives = 292/549 (53%), Gaps = 10/549 (1%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLS 86
           + D  + N ++  + K  L+  + +LF+ +P  ++ SW  +I       N   +  +FL 
Sbjct: 149 EPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLC 208

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
           M            RT  ++ +  A L      G  +HS +LK  + D  F   AL+  YS
Sbjct: 209 MWEEFNDG---RSRTFTTMIRASAGLG-LVQVGRQIHSCALKRGVGDDTFVSCALIDMYS 264

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +  S ++A  VFD++ E+  V + ++I  +A +    ++LS + +MR S      + +S 
Sbjct: 265 KCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISI 324

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            +R  A LA++E  +  H   V  G D +++  T L+D Y K G + DA  VF+  +   
Sbjct: 325 VIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFN-RMRRK 383

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N I+WNA++AGY   G     +E+F  +   G  P+  +FLAVL+A   +GL+    +  
Sbjct: 384 NVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIF 443

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             M   +K++P   HY C++  +GR G L++A  +  + PF+P   +W  LL+   +H  
Sbjct: 444 YSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMHEN 503

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            ++     + L  + P     Y+++ N+ +  G+  E A V + +K + +R     +WIE
Sbjct: 504 LELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIE 563

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           VK + + FL GD+ H +T++IY K+  +M E  R GYV     +L +V D E++  L YH
Sbjct: 564 VKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVEENKALLPDV-DEEEQRILKYH 622

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+AFGL++  P    L+I +  R+C DCH + K+I+ V  REIVVRD +R+H F +
Sbjct: 623 SEKLAIAFGLIN-TPHWTPLQITQGHRVCGDCHSAIKFIAMVTGREIVVRDASRFHHFRD 681

Query: 567 GSCTCGDLW 575
           GSC+CGD W
Sbjct: 682 GSCSCGDYW 690



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 86/195 (44%), Gaps = 5/195 (2%)

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           DVG + Y     + A   L ++   + +  + V SG + ++ V   ++  + K G++ DA
Sbjct: 114 DVGGSTY--DALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDA 171

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R++FDE +   +  +W  M+ G+   G+ S    LF  +          +F  ++ A   
Sbjct: 172 RKLFDE-MPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAG 230

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            GL  +  + I    ++  +         LI    + G +EDA  +   MP E     W 
Sbjct: 231 LGLV-QVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMP-EKTTVGWN 288

Query: 376 ALLSFSAIHGKADMA 390
           ++++  A+HG ++ A
Sbjct: 289 SIIASYALHGYSEEA 303


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 304/564 (53%), Gaps = 19/564 (3%)

Query: 24  RALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA-----HSN 76
           R L  S  D+  +    LI  Y +   +  +L++F+      I  W AL  A     H  
Sbjct: 102 RCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGK 161

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTC--ASLSHAFL-FGLSLHSLSLKLSLHD 133
             L L I ++ +  P+  F     T   + K C  + LS   L  G  +H+  L+     
Sbjct: 162 ELLDLYIQMNWIGTPSDRF-----TYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEA 216

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + L+  Y++F S   A  VF  +  ++ V + AMI  FA+N   + +L +F  M 
Sbjct: 217 NIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMM 276

Query: 194 SSDVGSTMYCVS--GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
                S    V+    L+A A LAA+EQ ++IHG+ +   LD  + V   LI  YG+ G 
Sbjct: 277 FEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGE 336

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           V   +RVFD N+   + ++WN++++ Y   G     +++F  +  +G +P   SF+ VL 
Sbjct: 337 VLMGQRVFD-NMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLG 395

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  +AGL  E +   E M  +Y++ PG+EHY C++  +GRA RL +A ++   M FEP  
Sbjct: 396 ACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGP 455

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            VW +LL    IH   ++A +    L ++ P +   YV++A++ +    W E   V K++
Sbjct: 456 TVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLL 515

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           + R ++K  G SWIEVK KV+ F++ D  + + E+I+  L +L  E +  GYVP  + +L
Sbjct: 516 EARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVL 575

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           +++ + EK   +  HSEKLA+AFGL++ A +G+T+RI KNLR+C DCH   K+IS+   R
Sbjct: 576 YDLDEEEKERIVLGHSEKLAVAFGLINTA-KGETIRIRKNLRLCEDCHAVTKFISKFANR 634

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EI+VRDVNR+H F +G C+CGD W
Sbjct: 635 EILVRDVNRFHHFRDGVCSCGDYW 658



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 143/309 (46%), Gaps = 12/309 (3%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P Q+T   L  +CA   ++  +GL +H   +       PF  + L++ Y    S D A K
Sbjct: 76  PTQQTFEHLIYSCAQ-KNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALK 134

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR----SSDVGSTMYCVSGALRAAA 212
           VFDE RER +  + A+    A      + L ++  M      SD  +  Y +   + +  
Sbjct: 135 VFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSEL 194

Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
            +  + + + IH H +  G + N+ V T L+D Y K G VS A  VF   +   N ++W+
Sbjct: 195 SVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCA-MPTKNFVSWS 253

Query: 273 AMMAGYAQQGDQSTVLELFHLL--EMRGFAPDEYSFLAVLTALCNAGLAG-ESEKWIERM 329
           AM+A +A+       LELF L+  E     P+  + + +L A   AGLA  E  K I   
Sbjct: 254 AMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQAC--AGLAALEQGKLIHGY 311

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
            +R +L+  L     LI+  GR G +   +R+   M  + D   W +L+S   +HG    
Sbjct: 312 ILRRQLDSILPVLNALITMYGRCGEVLMGQRVFDNMK-KRDVVSWNSLISIYGMHGFGKK 370

Query: 390 ASKMGKRLI 398
           A ++ + +I
Sbjct: 371 AIQIFENMI 379



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 99/206 (48%), Gaps = 4/206 (1%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSNS 77
           +HA  L+   +A+  +   L+  Y+K   +SY+  +F  +P+ N VSW+A+I+  A +  
Sbjct: 205 IHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEM 264

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
           P+       ++     + +PN  T+ ++ + CA L+ A   G  +H   L+  L      
Sbjct: 265 PMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLA-ALEQGKLIHGYILRRQLDSILPV 323

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  Y R       ++VFD +++RDVV + ++I  +  +     ++ +F +M    V
Sbjct: 324 LNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGV 383

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVI 223
             +       L A +    +E+ +++
Sbjct: 384 SPSYISFITVLGACSHAGLVEEGKIL 409


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 196/586 (33%), Positives = 312/586 (53%), Gaps = 33/586 (5%)

Query: 19  RIVHARALKSSQADRSI-YNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALI--- 71
           R +HA+ +K++  +     + LI   S S +   L Y+  +F+ I  PN   + ALI   
Sbjct: 23  RQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGF 82

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPN-QRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           S  SN   SL ++  ML    L++    + ++ S+ K C  L  AF  G  +H   LK  
Sbjct: 83  SDTSNPVESLILYARML--SCLNYSSGVEFSIPSVLKACGKLL-AFDEGRQVHGQVLKTH 139

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           L   PF G+++V  Y  F   + A++VFD +  RDVV + +MI G+ +   +  +  +F 
Sbjct: 140 LWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFD 199

Query: 191 DMRSSDVGSTMYCVSG-------------------ALRAAAELAAMEQCRVIHGHAVVSG 231
           +M   D+ S    + G                    L A A+L  +E+ + +H +  ++ 
Sbjct: 200 EMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNK 259

Query: 232 LDRNV-IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           ++ +   +G+ LID Y K G + +A  VF       N   WN+M++G A  G     L++
Sbjct: 260 IELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDI 319

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           F  +E     P+E +FL +L+   + GL  E + + E M  +YK+ P ++HY C+I   G
Sbjct: 320 FVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFG 379

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           RAGRLEDA  +   MPFE D   W+A+LS S  HG  ++      R I++ P D S+YV+
Sbjct: 380 RAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVL 439

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER-TEDIYT 469
           ++N+ +  GRWD+VA++R +M+ R V+K  G S + V GKVH FL G  +    +  +  
Sbjct: 440 LSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQVLA 499

Query: 470 KLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIV 529
           K+AE++   +  GY P   ++L ++ D  K   L  HSEK+A+AFGL+    +   + IV
Sbjct: 500 KIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIH-INKSAPIHIV 558

Query: 530 KNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           KNLR+C DCH   K +S+V  R+I++RD NR+H F NG C+C + W
Sbjct: 559 KNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 604


>gi|2244842|emb|CAB10264.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268231|emb|CAB78527.1| hypothetical protein [Arabidopsis thaliana]
          Length = 587

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 183/556 (32%), Positives = 282/556 (50%), Gaps = 35/556 (6%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA A+K  +  D  +  +    Y K+ L   + +LF+ IP  N+ +W A IS       
Sbjct: 66  IHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGR 125

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                 + +    +   PN  T  +    C+   H  L G+ LH L L+           
Sbjct: 126 PREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNL-GMQLHGLVLRSG--------- 175

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
                +    S  +++ +F E+  ++ V + +++  + QN     +  ++   R   V +
Sbjct: 176 -----FDTDVSIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVET 230

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
           + + +S  L A A +A +E  R IH HAV + ++R + VG+ L+D YGK G + D+ + F
Sbjct: 231 SDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAF 290

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           DE +   N +  N+++ GYA QG     L LF  +  RG                  G  
Sbjct: 291 DE-MPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRG-----------------CGAV 332

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
               K  + M+  Y +EPG EHY+C++  +GRAG +E A      MP +P  +VW AL +
Sbjct: 333 ENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQN 392

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
              +HGK  +     + L  ++P D   +V+++N  +  GRW E   VR+ +K   ++K 
Sbjct: 393 ACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKG 452

Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
            G SWI VK +VH F A DR H   ++I T LA+L  E E  GY P     L+++ + EK
Sbjct: 453 AGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEK 512

Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
              + +HSEKLALAFGL+S  P    +RI KNLRIC DCH  FK++S  V+REI+VRD N
Sbjct: 513 AAEVSHHSEKLALAFGLLS-LPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNN 571

Query: 560 RYHRFLNGSCTCGDLW 575
           R+HRF +G C+C D W
Sbjct: 572 RFHRFKDGICSCKDYW 587



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 149/353 (42%), Gaps = 42/353 (11%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSF-LPN 98
           YSK +    +  +    P+ N+VSWT+LIS  + +     +L  F  M R    S  LP 
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREAVASLRLP- 60

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
                             + G  +H+L++K       F G +    Y + R  D+A+K+F
Sbjct: 61  ------------------VTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLF 102

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
           DEI ER++  + A I     + R  +++  F + R  D           L A ++   + 
Sbjct: 103 DEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLN 162

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
               +HG  + SG D +V + +  I              +F E +   N+++W +++A Y
Sbjct: 163 LGMQLHGLVLRSGFDTDVSIRSSEI--------------IFTE-MGTKNAVSWCSLVAAY 207

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEP 337
            Q  +      L+           ++   +VL+A   AG+AG E  + I    V+  +E 
Sbjct: 208 VQNHEDEKASVLYLRSRKDIVETSDFMISSVLSAC--AGMAGLELGRSIHAHAVKACVER 265

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            +   + L+   G+ G +ED+E+    MP E +     +L+   A  G+ DMA
Sbjct: 266 TIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIGGYAHQGQVDMA 317


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 169/549 (30%), Positives = 305/549 (55%), Gaps = 15/549 (2%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
           N+L+  YSK   ++ + ++F  I   +++SW A+I+   ++     +L+ F  M++   +
Sbjct: 146 NSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTF-GMMQEANI 204

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH--DKPFCGSALVHFYSRFRSP 151
              P++ TL SL K C+S    +  G  +H   ++   H         +LV  Y +    
Sbjct: 205 KERPDEFTLTSLLKACSSTGMIYA-GKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYL 263

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
            +A+K FD+I+E+ ++ + ++I+G+AQ    V+++ +F  ++  +     + +S  +   
Sbjct: 264 FSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVF 323

Query: 212 AELAAMEQCRVIHGHAVV--SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A+ A + Q + +   AV   SGL+ +V+    ++D Y K G+V +A + F E + + + I
Sbjct: 324 ADFALLRQGKQMQALAVKLPSGLETSVL--NSVVDMYLKCGLVDEAEKCFAE-MQLKDVI 380

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +W  ++ GY + G     + +F+ +      PDE  +LAVL+A  ++G+  E E+   ++
Sbjct: 381 SWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKL 440

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
              + ++P +EHY C++  +GRAGRL++A+ +   MP +P+  +W+ LLS   +HG  ++
Sbjct: 441 LETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIEL 500

Query: 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG 449
             ++GK L+ I+  + + YV+++N+    G W+E    R++   + ++KE G SW+E++ 
Sbjct: 501 GKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIER 560

Query: 450 KVHVFLAGDRMHERTEDIYTKLAELMEEC-ERLGYVPVWDEMLHNVGDREKREALWYHSE 508
           +VH F +G+  H  T  I   L E      E LGYV      LH++ D  K E L  HSE
Sbjct: 561 EVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSE 620

Query: 509 KLALAFGLVSGA--PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           KLA+   L +G    +GKT+R+ KNLR+C DCHE  K +S++ +   VVRD  R+H F +
Sbjct: 621 KLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFED 680

Query: 567 GSCTCGDLW 575
           G C+CGD W
Sbjct: 681 GCCSCGDYW 689



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 197/419 (47%), Gaps = 22/419 (5%)

Query: 21  VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSP 78
           VH   LKS      I +N LI  Y K      + ++F+ +P  N+VSW+AL+S H  N  
Sbjct: 28  VHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGD 87

Query: 79  L--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           L  SL++F  M R       PN+ T ++  K C  L +A   GL +H   LK+       
Sbjct: 88  LKGSLSLFSEMGRQ---GIYPNEFTFSTNLKACG-LLNALEKGLQIHGFCLKIGFEMMVE 143

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            G++LV  YS+    + A+KVF  I +R ++ + AMI GF        +L  F  M+ ++
Sbjct: 144 VGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEAN 203

Query: 197 VGS--TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD--RNVIVGTGLIDGYGKAGIV 252
           +      + ++  L+A +    +   + IHG  V SG     +  +   L+D Y K G +
Sbjct: 204 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYL 263

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             AR+ FD+ +     I+W++++ GYAQ+G+    + LF  L+      D ++  +++  
Sbjct: 264 FSARKAFDQ-IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGV 322

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEH--YTCLISAMGRAGRLEDAERIAMAMPFEPD 370
             +  L  +  K ++ + V  KL  GLE      ++    + G +++AE+    M  + D
Sbjct: 323 FADFALLRQG-KQMQALAV--KLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLK-D 378

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEV 427
              W  +++    HG    + ++   ++  +I P D+  Y+ V +  S  G   E  E+
Sbjct: 379 VISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEP-DEVCYLAVLSACSHSGMIKEGEEL 436



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 149/323 (46%), Gaps = 21/323 (6%)

Query: 95  FLPNQR-TLASLFKTCA--SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            +PNQR  L S+ + C    LS     G  +H   LK          + L+  Y + R P
Sbjct: 1   MIPNQRQNLVSILRVCTRKGLSDQ---GGQVHCYLLKSGSGLNLITSNYLIDMYCKCREP 57

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A KVFD + ER+VV + A++ G   N  L  SLS+F++M    +    +  S  L+A 
Sbjct: 58  LMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKAC 117

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA----RRVFDENLSVLN 267
             L A+E+   IHG  +  G +  V VG  L+D Y K G +++A    RR+ D +L    
Sbjct: 118 GLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSL---- 173

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA--PDEYSFLAVLTALCNAGLAGESEKW 325
            I+WNAM+AG+   G  S  L+ F +++       PDE++  ++L A  + G+   + K 
Sbjct: 174 -ISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMI-YAGKQ 231

Query: 326 IERMKVRYKLE-PGLEHYT-CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
           I    VR     P     T  L+    + G L  A R A     E     W +L+   A 
Sbjct: 232 IHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSA-RKAFDQIKEKTMISWSSLILGYAQ 290

Query: 384 HGKADMASKMGKRLIDINPYDDS 406
            G+   A  + KRL ++N   DS
Sbjct: 291 EGEFVEAMGLFKRLQELNSQIDS 313


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 180/556 (32%), Positives = 298/556 (53%), Gaps = 7/556 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH   +K+   A+ S+ N+LI  +S       +  +F+ +   ++VSWTA+IS +  +
Sbjct: 316 REVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKN 375

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            L      +         +P++ T+AS+   CA L      G+ LH  + +  L      
Sbjct: 376 GLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLG-LLDKGIMLHEFADRTGLTSYVIV 434

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  YS+ R  D A +VF  I  ++V+ + ++I+G   N R  ++L  F  M  S  
Sbjct: 435 ANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLK 494

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +++  VS  L A A + A+   + IH HA+ +GL  +  +   L+D Y + G +  A  
Sbjct: 495 PNSVTLVS-VLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWN 553

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            F  N    +  +WN ++ GYAQQG     +ELFH +      PDE +F ++L A   +G
Sbjct: 554 QF--NSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSG 611

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  +  ++ E M+ ++ + P L+HY  ++  +GRAGRLEDA      MP +PD A+W AL
Sbjct: 612 MVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGAL 671

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L+   I+   ++     + + +++      Y+++ N+ +  G+WDEVA VRK+M++ R+ 
Sbjct: 672 LNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLT 731

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
            + G SW+EV G+VH FL GD  H + ++I   L    E+ E  G     D    ++ D 
Sbjct: 732 VDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDI-DA 790

Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
            K E    HSE+LA+AFGL++  P G  + + KNL +C +CH + K+IS+VV R I VRD
Sbjct: 791 SKAEIFCGHSERLAIAFGLINTVP-GTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRD 849

Query: 558 VNRYHRFLNGSCTCGD 573
             ++H F +G C+CGD
Sbjct: 850 TEQFHHFKDGVCSCGD 865



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 170/389 (43%), Gaps = 13/389 (3%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R VH   ++   ++D  + N LIT Y K   +  +  +F+ +P  + +SW A+IS +  +
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
            + L               P+  T+ S+   C +L    L G  +H   +K     +   
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERL-GREVHGYVIKTGFVAEVSV 333

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            ++L+  +S     D A+ VF ++  +D+V + AMI G+ +N     ++  +  M    V
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 ++  L A A L  +++  ++H  A  +GL   VIV   LID Y K   +  A  
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALE 453

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           VF   +   N I+W +++ G          L  F  + +    P+  + ++VL+A    G
Sbjct: 454 VF-HRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIG 511

Query: 318 LAGESEKWIERMKVRYKLEPGLEHY--TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            A    K I    +R  L  G + +    L+    R GR+E A     +   E D A W 
Sbjct: 512 -ALSCGKEIHAHALRTGL--GFDGFLPNALLDMYVRCGRMEPAWNQFNSC--EKDVASWN 566

Query: 376 ALLSFSAIHGKADMASKMGKRLI--DINP 402
            LL+  A  GK  +A ++  ++I  D+NP
Sbjct: 567 ILLTGYAQQGKGGLAVELFHKMIESDVNP 595



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%)

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+AL+  + RF     A  VF ++ ERD+  +  ++ G+A+     ++L+++  M    +
Sbjct: 132 GNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGI 191

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
              +Y     LR    L  + + R +H H +  G + +V V   LI  Y K G +  AR 
Sbjct: 192 RPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARL 251

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT---ALC 314
           VFD  +   + I+WNAM++GY +       L LF ++      PD  +  +V++   AL 
Sbjct: 252 VFDR-MPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +  L  E   ++  +K  +  E  + +   LI      G  ++AE +   M F+ D   W
Sbjct: 311 DERLGREVHGYV--IKTGFVAEVSVNN--SLIQMHSSVGCWDEAEMVFSKMEFK-DLVSW 365

Query: 375 RALLS 379
            A++S
Sbjct: 366 TAMIS 370


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 267/462 (57%), Gaps = 2/462 (0%)

Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
           A   G+++H+ S+ L      F  +ALV  YS+      A+K+FD IR+R VV + AMI 
Sbjct: 124 ALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMIS 183

Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
           G+ QN     ++ V+ +M+ + V          L A A+  A++  R +    V   +D 
Sbjct: 184 GYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDV 243

Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
           +V +G+ L++ Y + G+VS AR  FD  L   N + W +M+AGY   G     ++LFHL+
Sbjct: 244 SVFLGSALVNMYARCGLVSKARDWFDR-LQERNVVTWTSMIAGYGMHGHGREAIKLFHLM 302

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
              G  P++ +F+AVL A  +AGL  E     + MK  Y L P  EHY  ++   GRAG 
Sbjct: 303 RREGPTPNDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGL 362

Query: 355 LEDA-ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
           L+DA + I  ++P EP   VW A+L    +H   ++  ++ +RLI + P + S  V+++N
Sbjct: 363 LDDAMQFICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSN 422

Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
           + +  G+ + V +VR VM  RR++K+ G S IE+ G  H+F  G++ H++T +IY  L E
Sbjct: 423 IYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYLEE 482

Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
           L+      GYVP  D +LH + + E+  AL YHSEKLA+A+GL+  +     +R++KNLR
Sbjct: 483 LIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKNLR 542

Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           IC DCH + K++S V  REI+VRD +R+H F +G C+C + W
Sbjct: 543 ICGDCHLAIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW 584



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 110/259 (42%), Gaps = 4/259 (1%)

Query: 21  VHARA-LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA + L    +DR +   L+  YSK   L  + +LF+ I   ++V+W A+IS +  + L
Sbjct: 131 VHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGL 190

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +               +P+  T  +    CA  + A   G  +    +   +    F GS
Sbjct: 191 AERAIEVYREMQVAQVVPDSATFVATLSACAQ-AGALDLGREVERRIVSDQMDVSVFLGS 249

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV+ Y+R      A+  FD ++ER+VV + +MI G+  +    +++ +F  MR      
Sbjct: 250 ALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTP 309

Query: 200 TMYCVSGALRAAAELAAMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR- 257
                   L A A    + + R        V GL         ++D YG+AG++ DA + 
Sbjct: 310 NDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQF 369

Query: 258 VFDENLSVLNSIAWNAMMA 276
           + D          W AM+ 
Sbjct: 370 ICDSIPEEPGPEVWTAMLG 388


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 178/564 (31%), Positives = 297/564 (52%), Gaps = 16/564 (2%)

Query: 22  HARALKS----SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           H RA ++    +Q D + +N +I    +   L  + +LF+     ++ SW  ++S    H
Sbjct: 177 HGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRH 236

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
            ++  +L     M+R   ++F  +  T + +F     LS   L G  LH   +   L + 
Sbjct: 237 GHTTEALGRLQQMVR-AGVTF--SNYTYSMVFALAGLLSSRDL-GRQLHGRVVVAVLEED 292

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFD---EIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
            F G +L+  Y +    ++A  +FD   +  E     +  M+ G+ QN R  ++L  F  
Sbjct: 293 AFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRR 352

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M    V +  + ++    A A    +EQ R +HG     G   +  + + ++D Y K+G 
Sbjct: 353 MLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGS 412

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA R+F  +    N   W  M+  YA  G     LE+F  ++     P+E + +AVL+
Sbjct: 413 LEDACRIF-RSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLS 471

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  ++GL  +   +   M+  Y + P  EHY C++   GRAG L+ A+          +A
Sbjct: 472 ACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEA 531

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            VW+ LLS   +H   + A    ++L+ +  YD  +YV+++N+ +   +W +  ++R  M
Sbjct: 532 VVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSM 591

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
           K+RRVRK+ G+SWI +K  VH F+A D  H R+ +IY  L +LME  + +GY    D ++
Sbjct: 592 KERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVV 651

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
           H++ + ++  +L +HSEKLA+AFG++S  P G  LRI KNLR+C DCHE+ K+I+R  +R
Sbjct: 652 HDIEEEQRETSLKFHSEKLAIAFGIIS-TPVGTALRIFKNLRVCEDCHEAIKFITRATDR 710

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EIVVRD+ R+H F +G C+C D W
Sbjct: 711 EIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 163/383 (42%), Gaps = 46/383 (12%)

Query: 54  RLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           R+F+  P+ ++ +WT++IS           +  F  ML     +  PN   LA + + CA
Sbjct: 79  RVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGAT-APNAFVLAGVLRCCA 137

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
            L      G  +H   L+  +       +A++  Y++      A++ F  + ++D   + 
Sbjct: 138 GLGDV-ESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWN 196

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR--------------------- 209
            +I    Q+  LV +  +F +    DV S    VSG +R                     
Sbjct: 197 IVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTF 256

Query: 210 ----------AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                      A  L++ +  R +HG  VV+ L+ +  VG  L+D Y K G +  A  +F
Sbjct: 257 SNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIF 316

Query: 260 D--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           D   + +     AW+ M+AGY Q G +   LE F  +   G    ++   +V +A  NAG
Sbjct: 317 DRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAG 376

Query: 318 LAGESEK---WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +  +  +   ++E++  R+         + ++    ++G LEDA RI  +     + A+W
Sbjct: 377 MVEQGRQVHGFVEKLGHRFDAPLA----SAIVDMYSKSGSLEDACRIFRSAQ-TKNVALW 431

Query: 375 RALLSFSAIHGKADMASKMGKRL 397
             +L   A HG+  MA ++  R+
Sbjct: 432 TTMLCSYASHGQGRMALEIFSRM 454



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 9/184 (4%)

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM---YCVS 205
           R   NA +VFD    R +  + ++I G A+  R  D +  FA+M   + G+T    + ++
Sbjct: 72  RGLHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLD-ECGATAPNAFVLA 130

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
           G LR  A L  +E  R IHG  + SG+  +V++   ++D Y K G    ARR F   ++ 
Sbjct: 131 GVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGA-MAQ 189

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            ++ +WN ++    Q GD     +LF    +R    D  S+  +++ L   G   E+   
Sbjct: 190 KDATSWNIVIRACLQDGDLVGATQLFDESSLR----DVSSWNTIVSGLMRHGHTTEALGR 245

Query: 326 IERM 329
           +++M
Sbjct: 246 LQQM 249


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 191/575 (33%), Positives = 311/575 (54%), Gaps = 18/575 (3%)

Query: 12  QNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           QN+ +D   VH R + S    D  +   LI  Y +   +  + ++F+      I  W AL
Sbjct: 91  QNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNAL 150

Query: 71  ISAHS-----NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTC--ASLSHAFLF-GLSL 122
             A +        L L + ++ +  P+  F     T   + K C  + LS + L  G  +
Sbjct: 151 FRALAMVGCGKELLDLYVQMNWIGIPSDRF-----TYTFVLKACVVSELSVSPLQKGKEI 205

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           H+  L+          + L+  Y++F S   A  VF  +  ++ V + AMI  FA+N   
Sbjct: 206 HAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMP 265

Query: 183 VDSLSVFADM--RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
           + +L +F  M   + D       +   L+A A LAA+EQ ++IHG+ +  GLD  + V  
Sbjct: 266 MKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLN 325

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            LI  YG+ G +   +RVFD N+   + ++WN++++ Y   G     +++F  +  +G +
Sbjct: 326 ALITMYGRCGEILMGQRVFD-NMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSS 384

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
           P   SF+ VL A  +AGL  E +   E M  +Y++ PG+EHY C++  +GRA RL++A +
Sbjct: 385 PSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIK 444

Query: 361 IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
           +   M FEP   VW +LL    IH   ++A +    L ++ P +   YV++A++ +    
Sbjct: 445 LIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKM 504

Query: 421 WDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECER 480
           W E   V K+++ R ++K  G SWIEVK KV+ F++ D  + + E+I+  L +L  E + 
Sbjct: 505 WSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKA 564

Query: 481 LGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHE 540
            GYVP  + +L+++ + EK   +  HSEKLA+AFGL++   +G+T+RI KNLR+C DCH 
Sbjct: 565 QGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTV-KGETIRIRKNLRLCEDCHA 623

Query: 541 SFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             K+IS+   REI+VRDVNR+H F +G C+CGD W
Sbjct: 624 VTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 182/598 (30%), Positives = 312/598 (52%), Gaps = 42/598 (7%)

Query: 13  NTSTDPRIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
            ++   R VHA  ++      + + ++L+  Y+     + +  L     +P  V+W ALI
Sbjct: 37  GSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECDTP--VAWNALI 94

Query: 72  SAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS---- 124
           S H+       S   F+ M R       P   T  S+   C   +   L G+ +H     
Sbjct: 95  SGHNRGGRFGESCGSFVDMARAGAA---PTPVTYVSVLSACGKGTRDVLLGMQVHGRVVG 151

Query: 125 ------LSLKLSLHD------------KPFCG---------SALVHFYSRFRSPDNAKKV 157
                 L ++ +L D            K F G         ++L+   +R    D A+ +
Sbjct: 152 SGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDL 211

Query: 158 FDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
           FD + ERD V + AMI G+   +R  ++L +F +M+ S+V +  + +   + A A+L A+
Sbjct: 212 FDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGAL 271

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
           E    +  +    G+  +  VG  LID Y K G +  A  VF + +   +   W A++ G
Sbjct: 272 EMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVF-KGMHHRDKFTWTAIILG 330

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
            A  G +   +E+FH +      PDE +F+ VLTA  +AGL  +  ++   M   Y + P
Sbjct: 331 LAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAP 390

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            + HY C+I  +GRAG++ +A      MP  P++ +W  LL+   +HG +++   + +RL
Sbjct: 391 NVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERL 450

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
           ++++P +   Y++++N+ +   RW++V  +R  + ++ ++KE G S IE+ G +H F+AG
Sbjct: 451 LELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAG 510

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
           D+ H  +++IY+KL  ++ +   +GY P   E+   V ++EK++ L++HSEKLA+AF L+
Sbjct: 511 DQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALL 570

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S  P    +RIVKNLR+C DCH + K ISR+  RE+VVRD  R+H F +G C+C D W
Sbjct: 571 SSKPN-TVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 47/207 (22%)

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           RAA    +    R +H H V  G+ RN  V + L+  Y   G  + AR +  E       
Sbjct: 31  RAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGE---CDTP 87

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL---------- 318
           +AWNA+++G+ + G        F  +   G AP   ++++VL+A C  G           
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSA-CGKGTRDVLLGMQVH 146

Query: 319 ---------------------------AGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
                                       G + K  + M+VR  +      +T L+S + R
Sbjct: 147 GRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVS-----WTSLLSGLAR 201

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALL 378
            G++++A  +   MP E D   W A++
Sbjct: 202 LGQVDEARDLFDRMP-ERDTVSWTAMI 227


>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
 gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
          Length = 604

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 178/560 (31%), Positives = 302/560 (53%), Gaps = 11/560 (1%)

Query: 19  RIVHARALKSSQAD-RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HAR + +   D   + N+++  Y K   +    R F+ +   NIVSW A+ISA++ +
Sbjct: 53  RRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSEMKRRNIVSWNAVISAYAQN 112

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S +  +  LR       P+  T  S+    A       +   +H L+L++     P  
Sbjct: 113 DRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAG-PELHRWAKLVHDLALEVGFGSHPVV 171

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL++ YS+  S D A++VFDE+  +DVV +  MI  +AQ     ++L +F  M +  +
Sbjct: 172 ATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFHRMDAEGI 231

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            + +      + A   +A +   R IH   + +GL+ N ++GT L++ YGK G + +A++
Sbjct: 232 QANVITFVAVVHACVLVARITDARTIHRRIIEAGLESNTVLGTALLNMYGKCGGLPEAKK 291

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD+ L+  + + W+A++  YA+ G     L+LF L++  G  P++ +F+ VL A C+ G
Sbjct: 292 IFDK-LTERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLEACCHGG 350

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              E       +   ++L P   H  C++  +GRAG+LE+AE     MP + +A  W   
Sbjct: 351 FVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIARMPVKEEAITWSIF 410

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L     +G  +   +  +++ +  P+  + Y+ +A++ +  G  +E   V ++M+ R  +
Sbjct: 411 LGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLASMYTDAGMPEEAEAVARLMESRCPK 470

Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
           KE G S I V+G+VH F    + H + ++IY+ L  L      LGYVP    +L  +G  
Sbjct: 471 KEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLDVLHARALELGYVPDTRPLL--LGSV 528

Query: 498 EKREALWYHSEKLALAFGLVS-GAPRGKTLRIVKNLRICRDCHESFKYISRVVE-REIVV 555
           E++     HSE+LALAFG +S    R   + I+KNLR+CRDCHE  K++SR +E REI+V
Sbjct: 529 ERK----LHSERLALAFGAMSVPGKRNSPIHIIKNLRVCRDCHEFTKFVSRTMEGREIIV 584

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD +R+H F +G C+CGD W
Sbjct: 585 RDTSRFHLFKDGVCSCGDYW 604



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 136/275 (49%), Gaps = 3/275 (1%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  LH+  +     D  F  + ++  Y +    ++  + F E++ R++V + A+I  +AQ
Sbjct: 52  GRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSEMKRRNIVSWNAVISAYAQ 111

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N R  D++ +F  M    +  +    +  L A A        +++H  A+  G   + +V
Sbjct: 112 NDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELHRWAKLVHDLALEVGFGSHPVV 171

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            T L++ Y K G +  AR+VFDE L++ + ++W+ M+A YAQ G  +  LE+FH ++  G
Sbjct: 172 ATALLNMYSKVGSIDRARQVFDE-LAIKDVVSWSNMIAAYAQTGHGTEALEMFHRMDAEG 230

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
              +  +F+AV+ A C         + I R  +   LE      T L++  G+ G L +A
Sbjct: 231 IQANVITFVAVVHA-CVLVARITDARTIHRRIIEAGLESNTVLGTALLNMYGKCGGLPEA 289

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
           ++I   +  E D  VW A+L   A HG   +A K+
Sbjct: 290 KKIFDKLT-ERDVVVWSAILEAYARHGHPRVALKL 323


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 181/527 (34%), Positives = 294/527 (55%), Gaps = 18/527 (3%)

Query: 59  IPSPNIVSWTA--LISAHSNSPL------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           +PS  I ++ A  LI AH+ SPL      + + F  MLR  TL   PN+ T   L K CA
Sbjct: 101 VPSVPIDAFLANTLIRAHAASPLPSARLRAASFFPLMLRSATL---PNKFTFPFLLKACA 157

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP--DNAKKVFDEIRERDVVC 168
           +       G+  H+ +LK       +  + L+H YS F      +A+ VFD + +   V 
Sbjct: 158 AFPGV---GVQAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVT 214

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           + AMI G+ ++    D++ +F +M++S V      + G L AAA+L A+E  R +     
Sbjct: 215 WSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVE 274

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
             G+ ++V +   LID   K G +  A  VF + +     ++W +++   A +G     +
Sbjct: 275 KEGIGKSVTLCNALIDALAKCGDLDGAMAVF-QGMKERTIVSWTSVIDALAMEGRGKEAV 333

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
            +F  ++  G  PD+ +F+ VLTA  +AG+  E   + E M++ Y ++P +EHY C++  
Sbjct: 334 AVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDM 393

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
            GRAG +E A      MP +P+  +WR L++    HG+ ++   + + L++  P  ++ Y
Sbjct: 394 FGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANY 453

Query: 409 VIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIY 468
           V+++NV +   RW E +E+R+ M  R ++K  G S +E+ G+VH F+AGD  H + ++IY
Sbjct: 454 VMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQWKEIY 513

Query: 469 TKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRI 528
             + E+  E  R G++    E+L ++ + +K  AL +HSEKLA+AF L+   P G  +R+
Sbjct: 514 MMVEEMARELRRAGHISATSEVLLDLDEEDKEVALQWHSEKLAIAFVLLR-TPPGTQVRV 572

Query: 529 VKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           VKNLR+C DCH + K IS V  REI+VRD +R+HRF NGSC+C D W
Sbjct: 573 VKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDFW 619


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 303/563 (53%), Gaps = 13/563 (2%)

Query: 23  ARALKSSQADRSI--YNNLITNYSKS-NLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           A AL SS A   I  +N LI+  S+S   L  +  LF+ +P  +  +W+AL+S    H  
Sbjct: 82  ALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQ 141

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH---D 133
              +L ++  M   P      N+ T +S     A+ +     G  LH   ++  +     
Sbjct: 142 PEAALALYRRMQEEPGNDGADNEFTASSALAA-AAAARCGRAGRELHCHVVRRGIDAAGG 200

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM- 192
                SAL   Y++    D+A++VFD +  RD V + AM+  +    R  +   +F  M 
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R+  V    +  +G LRA A+ A     R +HG    SG   +    + L+  Y K G +
Sbjct: 261 RTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDM 320

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
             A RVF E ++  + ++W A+++GYAQ G     L  F +    G  PD  +F+ VL+A
Sbjct: 321 GSAVRVF-EAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSA 379

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             +AGL  +  +    +K +Y +E   +HY C+I  + R+G+ E AE++   M  +P+  
Sbjct: 380 CAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKF 439

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W +LL    IH    +A +  + L +I P + + YV +AN+ + VG +DEV +VR++M+
Sbjct: 440 LWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIME 499

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
            + + K    SWIEV  +VHVFL GD+ H + ++IY  L +L  +    GYV   + +LH
Sbjct: 500 SKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLH 559

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           +V D +K + + YHSE+LA+AFG+++  P G  +++ KNLRIC DCH + K IS++V+R+
Sbjct: 560 DVEDEQKEQDIGYHSERLAVAFGIIA-TPEGSPIKVFKNLRICGDCHAAIKLISQIVQRD 618

Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
           I+VRD NR+H F +G C+C D W
Sbjct: 619 IIVRDSNRFHHFKDGICSCRDYW 641


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 179/559 (32%), Positives = 301/559 (53%), Gaps = 5/559 (0%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           ++ H+ A+K   + D  +   L+  Y++   L  + ++F  +P  N V W  +I  H N 
Sbjct: 133 KLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNF 192

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF- 136
                +F    R     F  +   +  L + C ++ +A   G + H L +K +  D  F 
Sbjct: 193 SEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNV-YAGKEGKTFHGLCIKKNFIDSNFF 251

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++LV  Y +    D A K+F+EI  RDVV + A+I GFA+N R ++S+S+F  M +  
Sbjct: 252 LQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADS 311

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V       +  + A + L +++Q R +HG+ + +G++ +V   T  ID Y K G +  A 
Sbjct: 312 VTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAY 371

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           RVF + +   N  +W+ M+ G+   G  +  L LF+ +      P+  +F++VL+A  ++
Sbjct: 372 RVFCQ-IPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHS 430

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G   E     + M   Y + P  EHY C++  +GRAG++++A      MP EP A+ W A
Sbjct: 431 GRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGA 490

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL    IH +A++A ++ K+L+ +       YV+++N+ + VG W+ V + R  M ++ +
Sbjct: 491 LLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGI 550

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
            K  G + IE++ K+++F + DR   +   I +    L E    LGYVP    +LH+V D
Sbjct: 551 HKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDD 610

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
             K+E L  HSEKLA+ FGL++    G  +RI KN+R+C DCH + K+IS +  R+I++R
Sbjct: 611 EVKQEVLCGHSEKLAIVFGLLNSG-EGMPIRITKNMRVCGDCHTASKFISLITRRKIIMR 669

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           DV R+H   +G C+CGD W
Sbjct: 670 DVKRFHHVQDGVCSCGDYW 688



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 179/375 (47%), Gaps = 12/375 (3%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           + FNHI   N+ SW  ++++HS +      L +F  ML+   L    +   L    K C 
Sbjct: 68  KAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLV---DSFNLVFAVKACF 124

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
            LS  F      HSL++KL L   P+   AL++ Y+   S + A KVF+E+  ++ V +G
Sbjct: 125 GLS-LFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWG 183

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
            MI G    S       +F+ MR S      + V G ++A   + A ++ +  HG  +  
Sbjct: 184 VMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKK 243

Query: 231 G-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
             +D N  + T L+D Y K G +  A ++F+E +S  + + W+A++AG+A+ G     + 
Sbjct: 244 NFIDSNFFLQTSLVDMYMKCGFLDFALKLFEE-ISYRDVVVWSAIIAGFARNGRALESIS 302

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
           +F  +      P+  +F +++ A C++  + +  + +    +R  +E  +++YT  I   
Sbjct: 303 MFRQMLADSVTPNSVTFASIVLA-CSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMY 361

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS-AY 408
            + G +  A R+   +P E +   W  +++   +HG    A  +   +  +N   +S  +
Sbjct: 362 AKCGCIVTAYRVFCQIP-EKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTF 420

Query: 409 VIVANVLSGVGRWDE 423
           V V +  S  GR +E
Sbjct: 421 VSVLSACSHSGRIEE 435



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 141/312 (45%), Gaps = 14/312 (4%)

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL---SLHDKPFCGSALVHFYSR 147
           P +S     +TL SLF+   +L+       S H L+ ++   +LH     G  +   Y +
Sbjct: 7   PPISSRNPTKTLLSLFRFTKTLA-------SNHQLNAQILVNALHRSLLFGPMIFGAYIQ 59

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             S   A K F+ I   ++  +  ++   ++N    D L +F  M         + +  A
Sbjct: 60  LGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFA 119

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           ++A   L+  +  ++ H  A+   L+ +  V   L++ Y + G + +A +VF+E + + N
Sbjct: 120 VKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEE-VPLKN 178

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
           S+ W  M+ G+    ++  V ELF  +   GF  D +    ++ A C    AG+  K   
Sbjct: 179 SVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQA-CGNVYAGKEGKTFH 237

Query: 328 RMKVRYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
            + ++   ++      T L+    + G L+ A ++   + +  D  VW A+++  A +G+
Sbjct: 238 GLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYR-DVVVWSAIIAGFARNGR 296

Query: 387 ADMASKMGKRLI 398
           A  +  M ++++
Sbjct: 297 ALESISMFRQML 308


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 166/530 (31%), Positives = 285/530 (53%), Gaps = 9/530 (1%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHS--NSPLS-LNIFLSMLRHPTLSFLPNQRTLASL 105
           ++Y+  +F+    PN+  W  +I  +S  +SP+S + ++  M         PN  T   +
Sbjct: 17  VAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMF---LCGISPNSYTFGFV 73

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
              C  L      G  LHS  +K  L  +    + L+  Y+     D A  +FDE+ E D
Sbjct: 74  LNACCKLLR-LCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPD 132

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
              +  M+ G++QN + V++L +  +M++ +V S  + ++  +    +L  ++  + +H 
Sbjct: 133 SASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHS 192

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           +    G+  +V++GT L+  Y K G + +A +VF + ++  +   W+ M+AGYA  G   
Sbjct: 193 YIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVF-QGMAERDVTTWSIMIAGYAIHGHDE 251

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             L+LF  ++     P+  +F +VL+A  ++GL  +  +  E M   YK+ P ++HY C+
Sbjct: 252 KALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCM 311

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +    RAG +  A +    MP EP+  +WR LL     HG   +   + ++++ ++P   
Sbjct: 312 VDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSP 371

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             YV V+NV + +GRW  V +VR +MK++  +K+ G S IE+   VH F+ G+  H + E
Sbjct: 372 ENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKRE 431

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT 525
            IY  L ++  + +++G+V    ++LH++ + EK  AL  HSE+LA+A+GL+   P G  
Sbjct: 432 KIYGMLHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLH-TPNGSP 490

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +RIVKNLR CRDCHE  K IS V  REI++RD   +H F    C+C D W
Sbjct: 491 IRIVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 130/300 (43%), Gaps = 14/300 (4%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H++ +K+    +  + N LI  Y+    + Y+  +F+ +P P+  SW+ ++S +S +  
Sbjct: 89  LHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQ 148

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           ++     +      +   +  TLAS+   C  L      G  +HS   K  +      G+
Sbjct: 149 AVETLKLLREMQAENVSSDAFTLASVVGVCGDLG-VLDLGKWVHSYIDKEGVKIDVVLGT 207

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           ALV  YS+  S DNA KVF  + ERDV  +  MI G+A +     +L +F  M+ S +  
Sbjct: 208 ALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIP 267

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYGKAGIVS 253
                +  L A +    +E+     GH +   +     +         ++D + +AG+V 
Sbjct: 268 NCVTFTSVLSAYSHSGLVEK-----GHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVG 322

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTA 312
            A +         N + W  ++      G +     +   +L++   +P+ Y F++ + A
Sbjct: 323 HAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYA 382


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 187/598 (31%), Positives = 304/598 (50%), Gaps = 39/598 (6%)

Query: 14  TSTDPRIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           T T  + +HA  +K        + N L+  Y K    S++L++F+ +P  + ++W ++++
Sbjct: 18  TLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLT 77

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           A + + LS           + S L P+    ++L K CA+L  +   G  +H   +    
Sbjct: 78  ALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLG-SIDHGRQVHCHFIVSEY 136

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM------------------- 172
            +     S+LV  Y++    ++AK VFD IR ++ + + AM                   
Sbjct: 137 ANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 196

Query: 173 ------------IVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQ 219
                       I GF Q+ + +++ SVF +MR   V       +S  + A A LAA   
Sbjct: 197 LPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIA 256

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            R +HG  +  G D  V +   LID Y K   V  A+ +F   +   + ++W +++ G A
Sbjct: 257 GRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSR-MRHRDVVSWTSLIVGMA 315

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G     L L+  +   G  P+E +F+ ++ A  + G   +  +  + M   Y + P L
Sbjct: 316 QHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSL 375

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI- 398
           +HYTCL+  +GR+G L++AE +   MPF PD   W ALLS     G+  M  ++   L+ 
Sbjct: 376 QHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVS 435

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
                D S Y++++N+ +    W +V+E R+ + +  VRK+ G S +EV+ +  VF AG+
Sbjct: 436 SFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGE 495

Query: 459 RMHERTEDIYTKLAELMEECE-RLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
             H   EDI+  L +L EE   R GYVP    +LH++ ++EK + L++HSE+ A+A+GL+
Sbjct: 496 TSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLL 555

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
              P G  +RIVKNLR+C DCH   K+IS + EREI+VRD  RYH F  G C+C D W
Sbjct: 556 KAVP-GTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L+  A    +   + +H H V  G+ +   +   L++ YGK G  S A +VFDE +   +
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDE-MPHRD 68

Query: 268 SIAWNAMMAGYAQQG-DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            IAW +++    Q      T+     +    G  PD++ F A++ A  N G
Sbjct: 69  HIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLG 119


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 176/557 (31%), Positives = 302/557 (54%), Gaps = 14/557 (2%)

Query: 28  SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIF 84
           S+  D  +   L+T Y++SN L  +   F+ I SP++VSW A+ +A   H  S  +L +F
Sbjct: 384 SATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLF 443

Query: 85  LSMLRHPTLSFLPNQRTLASLFKTCASL--SHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142
             ML        P+  T  +    CA+     A   G  + SL  +  L       +A +
Sbjct: 444 ERMLLE---GVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATL 500

Query: 143 HFYSRFRSPDNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD-VGS 199
           + Y++  S  +A+ VF+ I    RD + + +M+  +  +    ++  +F  M +   V  
Sbjct: 501 NMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKP 560

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
                   L A+    ++ Q R IH   V +G + + ++   L++ Y K G + DA+ +F
Sbjct: 561 NKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIF 620

Query: 260 DENLSVL-NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           D++ S   + IAW +++AGYAQ G     L+LF  ++ +G  P+  +F++ LTA  + G 
Sbjct: 621 DKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGK 680

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             +  + +  M   + + P  +H++C++  +GR GRL++AE++ +    + D   W ALL
Sbjct: 681 LEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKL-LERTSQADVITWMALL 739

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
                  + +   +  +R++ ++P   S+Y+++A++ +  GRW+E A +RK M D+ +R 
Sbjct: 740 DACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRA 799

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
           + G S +EV  ++H F AGD+ H ++E+IY +L  L    +  GYV     +LH+V    
Sbjct: 800 DPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEH 859

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K   L  HSEKLA+AFGL+S  P G  LR++KNLR+C DCH + K IS+V  R+I++RD 
Sbjct: 860 KERLLMRHSEKLAIAFGLMS-TPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDS 918

Query: 559 NRYHRFLNGSCTCGDLW 575
           +RYH F +G+C+CGD W
Sbjct: 919 SRYHHFTSGTCSCGDYW 935



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 169/379 (44%), Gaps = 28/379 (7%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHP 91
           + ++LI  ++K   L+ +  L +   S  + S TA+I A   H     ++ +F  M    
Sbjct: 82  LASDLIVMHAKCGNLAEAEALADRFAS--VYSCTAMIRAWMEHGRPDKAMELFDRM---- 135

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                PN   L +L   C+ L +    G  +HS        +    G+AL+  YS+  S 
Sbjct: 136 --EVRPNCHALIALVNACSCLGN-LAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSL 192

Query: 152 DNAKKVFDEI---RERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGA 207
            +AK+ FD +    +RDVV + AMI  F +N    ++L +F DM R              
Sbjct: 193 IDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSV 252

Query: 208 LRAAAE--LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF----DE 261
           L +  E  L ++E  R IHG  V +G++R   V T L+D YGK G + DA  VF    DE
Sbjct: 253 LDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDE 312

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
             S  + +  +AM++   Q G     L LF  + + G  P   + ++VL A C+    G 
Sbjct: 313 EPST-SLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNA-CSMLQVGS 370

Query: 322 SEKWI--ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           +  ++  + M+V       +   T L++   R+  L  A     A+   PD   W A+ +
Sbjct: 371 ATAFVLEQAMEVVSATRDNVLGTT-LLTTYARSNDLPRARATFDAIQ-SPDVVSWNAMAA 428

Query: 380 FSAIHGKADMASKMGKRLI 398
               H ++  A  + +R++
Sbjct: 429 AYLQHHRSREALVLFERML 447


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 180/541 (33%), Positives = 290/541 (53%), Gaps = 14/541 (2%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
            N+I        LS +  +F+ +P  N+V+WT++IS ++     +N  + + R      +
Sbjct: 175 TNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYA-----MNNKVDVARK-LFEVM 228

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG-SALVHFYSRFRSPDNAK 155
           P++  +       A L      G    +  L  ++  KP    + ++  +        A+
Sbjct: 229 PDKNEVT----WTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKAR 284

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
            VFD+++E+D   + A+I  + +    +++L++F+ M+   V      +   L     LA
Sbjct: 285 WVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLA 344

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           +++  R +H   V S  D ++ V + LI  Y K G +   +RVFD   S  + + WN+++
Sbjct: 345 SLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDR-FSSKDIVMWNSII 403

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           AGYAQ G     LE+FH +   G APDE +F+ VL+A    G   E  +  E MK +Y++
Sbjct: 404 AGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQV 463

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           +   EHY C++  +GRAG+L +A  +   MP E DA VW ALLS    H   D+A    K
Sbjct: 464 DQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAK 523

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
           +L+ + P     Y++++N+ +   RW +VAE+RK M+ R V K  G SWIEV  KVH+F 
Sbjct: 524 KLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFT 583

Query: 456 AGDRM-HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
            G    H   E I  KL +L       GY P    ++H+V + +K  +L +HSEK+A+A+
Sbjct: 584 GGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAY 643

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+   P GK +R++KNLR+C DCH + K I++V  REI++RD NR+H F +G C+C D 
Sbjct: 644 GLLK-VPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDF 702

Query: 575 W 575
           W
Sbjct: 703 W 703



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 151/340 (44%), Gaps = 61/340 (17%)

Query: 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201
           + +++R    D A+ +FD+++ + V  + A++ G+  N R  ++  +F  M         
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMP-------- 74

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
                                          +RN I   GL+ GY K G++S+AR+VFD+
Sbjct: 75  -------------------------------ERNTISWNGLVSGYVKNGMISEARKVFDK 103

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            +   N ++W +M+ GY Q+G    +++   LL  R    +  S+  +L  L   G   E
Sbjct: 104 -MPERNVVSWTSMVRGYVQEG----LIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDE 158

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
           + +  + + V+  +       T +I  +   GRL +A  I   MP + +   W +++S  
Sbjct: 159 ARRLFDMIPVKDVVAS-----TNMIGGLCSEGRLSEAREIFDEMP-QRNVVAWTSMISGY 212

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
           A++ K D+A K+ + + D N   +  +  +    +  GR +E AE+ K M  + V    G
Sbjct: 213 AMNNKVDVARKLFEVMPDKN---EVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNG 269

Query: 442 RSW-IEVKGKVH----VFLAGDRMHERTEDIYTKLAELME 476
                 + G+V     VF   D+M E+ +  ++ L ++ E
Sbjct: 270 MIMGFGLNGEVGKARWVF---DQMKEKDDGTWSALIKIYE 306



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 38/265 (14%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +A+V  Y   + P  A+K+FD++ ER+ + +  ++ G+ +N  + ++  VF  M   +V 
Sbjct: 51  NAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVV 110

Query: 199 STMYCVSGALRAA----AELA--AMEQCRVIHGHAVVSGLD-----------------RN 235
           S    V G ++      AEL    M +  V+    ++ GL                  ++
Sbjct: 111 SWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKD 170

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
           V+  T +I G    G +S+AR +FDE +   N +AW +M++GYA         +LF ++ 
Sbjct: 171 VVASTNMIGGLCSEGRLSEAREIFDE-MPQRNVVAWTSMISGYAMNNKVDVARKLFEVM- 228

Query: 296 MRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
                PD  E ++ A+L     +G   E+ +  + M V+      +     +I   G  G
Sbjct: 229 -----PDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVK-----PVAACNGMIMGFGLNG 278

Query: 354 RLEDAERIAMAMPFEPDAAVWRALL 378
            +  A  +   M  E D   W AL+
Sbjct: 279 EVGKARWVFDQMK-EKDDGTWSALI 302


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 175/527 (33%), Positives = 291/527 (55%), Gaps = 11/527 (2%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           ++F+ +P  ++VSW  +I+  + + +   +L++   M ++  L   P+  TL+S+    A
Sbjct: 181 KVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLK--PDSFTLSSILPIFA 238

Query: 111 SLSHAFLF-GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCY 169
              H  +  G  +H  +++       F GS+L+  Y++    + + + F  +  +D + +
Sbjct: 239 E--HVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISW 296

Query: 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
            ++I G  QN      L  F  M   +V       S  + A A L A+   R +HG  V 
Sbjct: 297 NSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVR 356

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
            G D N  + + L+D Y K G +  AR VFD  +   + +AW A++ G A  G     + 
Sbjct: 357 LGFDDNEFIASSLVDMYAKCGNIKMARYVFDR-IDKRDMVAWTAIIMGCAMHGHALDAVS 415

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
           LF  +   G  P   +F+AVLTA  +AGL  E  ++   M+  + + PGLEHY  +   +
Sbjct: 416 LFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLL 475

Query: 350 GRAGRLEDA-ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
           GRAGRLE+A + I+     +P  +VW  LL+    H   ++A K+  +L+ ++  +  AY
Sbjct: 476 GRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAY 535

Query: 409 VIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIY 468
           V+++N+ S   RW + A +R  M+ + ++K    SWIEV  +VH F+AGD+ H   + I 
Sbjct: 536 VLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKIN 595

Query: 469 TKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRI 528
             L  L+E+ E+ GYV   +++LH+V +  KRE L  HSE+LA+A+G++S    G T+R+
Sbjct: 596 KALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTA-GTTIRV 654

Query: 529 VKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +KN+R+C DCH + K+I+++V REI VRD +R+H F NGSC+CGD W
Sbjct: 655 IKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 171/357 (47%), Gaps = 27/357 (7%)

Query: 51  YSLRLFNHIPSPNIV-SWTALI---SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLF 106
           +SL LFN +PSP    +W+++I   ++HS   LS + F SM    +LS  PN+    SL 
Sbjct: 61  HSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSM---RSLSVPPNRHVFPSLL 117

Query: 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP--------------- 151
           K    L H  L   SLH+ +++L L    +  +AL++ Y++F +                
Sbjct: 118 KASTLLKHHKL-AHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGI 176

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGALRA 210
           D  KKVFD +  RDVV +  +I GFAQN   V++L +  +M ++  +    + +S  L  
Sbjct: 177 DCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPI 236

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            AE   + + + IHG+AV +G D +V +G+ LID Y K   +  + R F   L   ++I+
Sbjct: 237 FAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAF-YILPRKDAIS 295

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WN+++AG  Q G+    L  F  +      P   SF +V+ A C    A    + +    
Sbjct: 296 WNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPA-CAHLTALSLGRQLHGCI 354

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
           VR   +      + L+    + G ++ A R       + D   W A++   A+HG A
Sbjct: 355 VRLGFDDNEFIASSLVDMYAKCGNIKMA-RYVFDRIDKRDMVAWTAIIMGCAMHGHA 410


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 184/559 (32%), Positives = 311/559 (55%), Gaps = 26/559 (4%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLN----IFL 85
           + D   +N+LI+   ++     +  +F+ +P  + VSW ++I A S+S  S++     FL
Sbjct: 368 EKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFL 427

Query: 86  SMLRH----PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSAL 141
            M+R       ++F+     ++SL  +   +SH       +H+L LK  L D    G+AL
Sbjct: 428 QMMRGGWGLSRVTFINILSAVSSL--SLHEVSH------QIHALVLKYCLSDDTAIGNAL 479

Query: 142 VHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
           +  Y +    +  +K+F  + E RD V + +MI G+  N  L  ++ +   M        
Sbjct: 480 LSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLD 539

Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
            +  +  L A A +A +E+   +H   + + L+ +V+VG+ L+D Y K G +  A R F 
Sbjct: 540 SFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFF- 598

Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
           E + + N  +WN+M++GYA+ G     L+LF  + + G  PD  +F+ VL+A  + G   
Sbjct: 599 ELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVE 658

Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
           E  +  + M   Y+L P +EH++C++  +GRAG+L++      +MP +P+  +WR +L  
Sbjct: 659 EGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGA 718

Query: 381 SA-IHGK-ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               +G+  ++  +  + L+++ P +   YV++AN+ +   +W++VA+ R  MK+  V+K
Sbjct: 719 CCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKK 778

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
           E G SW+ +K  VHVF+AGD++H   + IY KL EL  +    GY+P     L ++    
Sbjct: 779 EAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELEN 838

Query: 499 KREALWYHSEKLALAFGLV--SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
           K E L YHSEK+A+AF L   S  P    +RI+KNLR+C DCH +F YIS++V R+IV+R
Sbjct: 839 KEELLSYHSEKIAVAFVLTRQSALP----IRIMKNLRVCGDCHSAFGYISKIVGRQIVLR 894

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F +G C+CGD W
Sbjct: 895 DSNRFHHFEDGKCSCGDYW 913



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 181/413 (43%), Gaps = 52/413 (12%)

Query: 10  QPQNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           Q    S + R +H +++K     +  + N LI  Y +   L  + +LF+ + + N+V+W 
Sbjct: 110 QGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWA 169

Query: 69  ALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA-SLSHAFLFGLSLHS 124
            LIS ++ +     +   F  M+R     F+PN     S  + C  S       G+ +H 
Sbjct: 170 CLISGYTQNGKPDEACARFRDMVR---AGFIPNHYAFGSALRACQESGPSGCKLGVQIHG 226

Query: 125 LSLKLSLHDKPFCGSALVHFY-SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
           L  K          + L+  Y S   S ++A+ VFD I  R+ + + ++I  +++    V
Sbjct: 227 LISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAV 286

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ----CRVIHGHAVVSGLDRN-VIV 238
            +  +F+ M+   +G +         A +E + +E+     R +H H + +GL+ N V +
Sbjct: 287 SAYDLFSSMQKEGLGFSF----KPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAI 342

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE--- 295
           G GL++ Y K+G ++DA  VF E +   +S++WN++++G  Q        E+F L+    
Sbjct: 343 GNGLVNMYAKSGAIADACSVF-ELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYD 401

Query: 296 ----------------------------MR-GFAPDEYSFLAVLTALCNAGLAGESEKWI 326
                                       MR G+     +F+ +L+A+ +  L  E    I
Sbjct: 402 QVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLH-EVSHQI 460

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             + ++Y L         L+S  G+ G + + E+I   M    D   W +++S
Sbjct: 461 HALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMIS 513


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 182/566 (32%), Positives = 297/566 (52%), Gaps = 26/566 (4%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR L     DR +  +  +++ Y ++  ++ +  LF+ +P  N+VSWTA+IS ++ 
Sbjct: 158 RVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 77  SP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +    L+  +F  M     +S+      L    +       A LF          +  H 
Sbjct: 218 NGEVNLARKLFEVMPERNEVSW---TAMLVGYIQAGHVEDAAELFN--------AMPEHP 266

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
              C + +V F  R    D AK VF+++ ERD   + AMI  + QN  L+++LS F +M 
Sbjct: 267 VAACNAMMVGFGQRGMV-DAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREML 325

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              V      V   L   A LA ++  R +H   +    D +V   + LI  Y K G + 
Sbjct: 326 WRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLD 385

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A+RVF       + + WN+M+ GYAQ G     L +FH + + G +PD  +++  LTA 
Sbjct: 386 KAKRVF-HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTAC 444

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G   E  +    M V   + PG EHY+C++  +GR+G +E+A  +   MP EPDA +
Sbjct: 445 SYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVI 504

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W AL+    +H  A++A    K+L+++ P +   YV+++++ + VGRW++ +++RK +  
Sbjct: 505 WGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISS 564

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRM----HERTEDIYTKLAELMEECERLGYVPVWDE 489
           R + K  G SWIE   +VH+F +GD +    H     I  KL  L+ E    GY      
Sbjct: 565 RNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMES---GYSADGSF 621

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +LH++ + +K  +L YHSE+ A+A+GL+   P G  +R++KNLR+C DCH + K I+++ 
Sbjct: 622 VLHDIDEEQKSHSLRYHSERQAVAYGLLK-IPEGMPIRVMKNLRVCGDCHSAIKLIAKIT 680

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
            REI++RD NR+H F +G C+C D W
Sbjct: 681 SREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 127/274 (46%), Gaps = 38/274 (13%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMRSSDVGSTMYCVSG-ALR 209
           + A+  F+ +  R    Y A++ G+ +N RL D +L +F  M S D+ S    +SG +LR
Sbjct: 34  EGARAAFEAMPLRTTASYNALLAGYFRN-RLPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 210 ------AAAELAAME-QCRVIHGHAVVSGL-----------------DRNVIVGTGLIDG 245
                 AAA LA++     V+   +++ G                  +RN +  T L+ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
              AG V++ARR+FDE +   + +AW AM++GY Q G  +    LF  +  R       S
Sbjct: 153 LLDAGRVNEARRLFDE-MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV----S 207

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           + A+++     G    + K  E M  R ++      +T ++    +AG +EDA  +  AM
Sbjct: 208 WTAMISGYAQNGEVNLARKLFEVMPERNEVS-----WTAMLVGYIQAGHVEDAAELFNAM 262

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           P  P AA    ++ F    G  D A  + +++ +
Sbjct: 263 PEHPVAACNAMMVGFGQ-RGMVDAAKTVFEKMCE 295


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 182/532 (34%), Positives = 285/532 (53%), Gaps = 16/532 (3%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSN--SPLSLNIFLSMLRH--PTLSFLPNQRTLAS 104
           LSY+  +F+ IPSP+ +++  +I +HS      SL  F SM  +  P  +F     T   
Sbjct: 38  LSYARYVFSRIPSPDTIAYNTIIRSHSRFFPSHSLFYFFSMRSNGIPLDNF-----TFPF 92

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           + K C+ L       L LHSL +K  L    F  +AL+  Y    S + A KVFDE+ ER
Sbjct: 93  VLKACSRLQ----INLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSER 148

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD-VGSTMYCVSGALRAAAELAAMEQCRVI 223
           D V +  +I  F  N    ++L +F  M+  D V      +   + A + L  +E  R +
Sbjct: 149 DSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWV 208

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
                  GL  +V +GT LID + + G + ++  VF E ++V N + W A++ G    G 
Sbjct: 209 RAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVF-EKMAVRNVLTWTALINGLGVHGR 267

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
            +  L +FH +   G  PD  +F  VL A  + GL  E     E ++  Y+++P L+HY 
Sbjct: 268 STEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYG 327

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
           C++  +GRAG L +A      MP +P++ +WR LL     H    +A K+  ++  I+  
Sbjct: 328 CMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSS 387

Query: 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER 463
            +   V+++NV    GRW E A +R  M+++R+ KE G S I V   +H F++GD  H +
Sbjct: 388 QNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQ 447

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
           +EDI   L+ ++ +    GY+     +LH++ + E+  +L YHSEKLA+AF ++S   + 
Sbjct: 448 SEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDK- 506

Query: 524 KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +T+RI+KNLRIC DCH   K+IS   ER+I++RD NR+H F  G C+C D W
Sbjct: 507 RTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 182/566 (32%), Positives = 297/566 (52%), Gaps = 26/566 (4%)

Query: 19  RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR L     DR +  +  +++ Y ++  ++ +  LF+ +P  N+VSWTA+IS ++ 
Sbjct: 158 RVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQ 217

Query: 77  SP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +    L+  +F  M     +S+      L    +       A LF          +  H 
Sbjct: 218 NGEVNLARKLFEVMPERNEVSW---TAMLVGYIQAGHVEDAAELFN--------AMPEHP 266

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
              C + +V F  R    D AK VF+++ ERD   + AMI  + QN  L+++LS F +M 
Sbjct: 267 VAACNAMMVGFGQRGMV-DAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREML 325

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              V      V   L   A LA ++  R +H   +    D +V   + LI  Y K G + 
Sbjct: 326 WRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLD 385

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A+RVF       + + WN+M+ GYAQ G     L +FH + + G +PD  +++  LTA 
Sbjct: 386 KAKRVF-HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTAC 444

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              G   E  +    M V   + PG EHY+C++  +GR+G +E+A  +   MP EPDA +
Sbjct: 445 SYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVI 504

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W AL+    +H  A++A    K+L+++ P +   YV+++++ + VGRW++ +++RK +  
Sbjct: 505 WGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISS 564

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRM----HERTEDIYTKLAELMEECERLGYVPVWDE 489
           R + K  G SWIE   +VH+F +GD +    H     I  KL  L+ E    GY      
Sbjct: 565 RNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLMES---GYSADGSF 621

Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
           +LH++ + +K  +L YHSE+ A+A+GL+   P G  +R++KNLR+C DCH + K I+++ 
Sbjct: 622 VLHDIDEEQKSHSLRYHSERQAVAYGLLK-IPEGMPIRVMKNLRVCGDCHSAIKLIAKIT 680

Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
            REI++RD NR+H F +G C+C D W
Sbjct: 681 SREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 127/274 (46%), Gaps = 38/274 (13%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADMRSSDVGSTMYCVSG-ALR 209
           + A+  F+ +  R    Y A++ G+ +N RL D +L +F  M S D+ S    +SG +LR
Sbjct: 34  EGARAAFEAMPLRTTASYNALLAGYFRN-RLPDAALGLFRRMPSRDLASYNALISGLSLR 92

Query: 210 ------AAAELAAME-QCRVIHGHAVVSGL-----------------DRNVIVGTGLIDG 245
                 AAA LA++     V+   +++ G                  +RN +  T L+ G
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
              AG V++ARR+FDE +   + +AW AM++GY Q G  +    LF  +  R       S
Sbjct: 153 LLDAGRVNEARRLFDE-MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV----S 207

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           + A+++     G    + K  E M  R ++      +T ++    +AG +EDA  +  AM
Sbjct: 208 WTAMISGYAQNGEVNLARKLFEVMPERNEVS-----WTAMLVGYIQAGHVEDAAELFNAM 262

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           P  P AA    ++ F    G  D A  + +++ +
Sbjct: 263 PEHPVAACNAMMVGFGQ-RGMVDAAKTVFEKMCE 295


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 171/564 (30%), Positives = 309/564 (54%), Gaps = 7/564 (1%)

Query: 15  STDPRIVHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           +T+ +I+HA  +     +  I  N L+T Y+KS L+  + ++F  +P  + V+W ALI  
Sbjct: 349 ATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGG 408

Query: 74  HSNS--PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           H++S  P        ++R   +    N  T++++   C + +     G+ +H+  +    
Sbjct: 409 HADSEEPDEALKAFKLMREEGVPI--NYITISNVLGACLAPNDLLEHGMPIHAFIILTGF 466

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               +  ++L+  Y++    +++  +FD +  ++   + AM+   A +  + ++L    +
Sbjct: 467 QSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLE 526

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR + V    +  S  L AAA+LA +E+ + +HG AV  G D N  V +  +D YGK G 
Sbjct: 527 MRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGE 586

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + D  R+    ++  + ++WN + + +++ G      E FH +   G  PD  +F+++L+
Sbjct: 587 IDDVLRIIPRPIN-RSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLS 645

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  + G+  E   + + M   + +   + H  C+I  +GR+GR  +AE     MP  P  
Sbjct: 646 ACSHGGMVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTD 705

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
            VWR+LL+    HG  ++  K  + L+ ++P DDSAYV+ +N+ +  G+W++V ++R+ M
Sbjct: 706 HVWRSLLAACKTHGNLELGRKAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIRRQM 765

Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
              +++K+   SW+++K K+ +F  GD  H +  +IY KL EL +  +  GY+P     L
Sbjct: 766 GLNKIKKKPACSWVKLKNKLSLFGMGDHSHPQASEIYAKLEELKKMIKEAGYIPDISYAL 825

Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            +  + +K   LW HSE+LALA+GL+S +P G TL+I KNLR+C DCH  +K+ S ++ R
Sbjct: 826 QDTDEEQKEHNLWNHSERLALAYGLIS-SPEGSTLKIFKNLRVCGDCHSVYKFASGILGR 884

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           +IV+RD  R+H+F  G C+C D W
Sbjct: 885 KIVLRDPYRFHQFSGGQCSCTDYW 908



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 179/394 (45%), Gaps = 24/394 (6%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSM 87
           +D  +  +L+  Y    L + ++++F  +   N+VSWTAL+ A   +    + +NI+  M
Sbjct: 63  SDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRM 122

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
            R   +S   N  T++S+  TC SL +  L G  +    +K  L       ++L+  +  
Sbjct: 123 -RSEGMS--CNDNTMSSVISTCVSLENE-LLGYQVLGHVIKYGLETNVSVANSLISMFGY 178

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM--RSSDVGSTMYCVS 205
           F S + A  VF  + E D + + +MI  + +N    +SL  F+ M     ++ ST   +S
Sbjct: 179 FGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTT--LS 236

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
             L     +  ++  R IH   +  G + NV     LI  Y  AG   DA  VF + +  
Sbjct: 237 TMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVF-QGMVE 295

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            + I+WN+MMA YAQ G+    L+L   +       +  +F + L A  +   A E  K 
Sbjct: 296 KDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEG-KI 354

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +  + +   L   +     L++   ++G + +A+++   MP + D   W AL+   A   
Sbjct: 355 LHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMP-KRDGVTWNALIGGHADSE 413

Query: 386 KADMASKMGKRL----IDINPYDDSAYVIVANVL 415
           + D A K  K +    + IN      Y+ ++NVL
Sbjct: 414 EPDEALKAFKLMREEGVPIN------YITISNVL 441



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 147/291 (50%), Gaps = 11/291 (3%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           + + S+ N+LI+ +     +  +  +F+ +   + +SW ++I+A+  + L   SL  F  
Sbjct: 163 ETNVSVANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSW 222

Query: 87  MLR-HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY 145
           M R H  +    N  TL+++   C S+ +   +G  +HSL LK   +      + L+  Y
Sbjct: 223 MFRVHKEI----NSTTLSTMLAGCGSVDN-LKWGRGIHSLVLKFGWNSNVCASNTLITMY 277

Query: 146 SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205
           S     ++A+ VF  + E+D++ + +M+  +AQ+   +D+L + A M     G+     +
Sbjct: 278 SDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFT 337

Query: 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
            AL A ++     + +++H   +  GL  NVIVG  L+  Y K+G++ +A++VF + +  
Sbjct: 338 SALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVF-QTMPK 396

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            + + WNA++ G+A   +    L+ F L+   G  P  Y  ++ +   C A
Sbjct: 397 RDGVTWNALIGGHADSEEPDEALKAFKLMREEG-VPINYITISNVLGACLA 446



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 133/300 (44%), Gaps = 9/300 (3%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           P+   +ASL   C       + G+ +H   +K+ L    F G++LVH Y  +    +A K
Sbjct: 27  PSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLLSDVFVGTSLVHLYGNYGLAADAMK 86

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF E+  ++VV + A++V +         ++++  MRS  +      +S  +     L  
Sbjct: 87  VFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMSCNDNTMSSVISTCVSLEN 146

Query: 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
                 + GH +  GL+ NV V   LI  +G  G V +A  VF   +   ++I+WN+M+A
Sbjct: 147 ELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFS-GMDEHDTISWNSMIA 205

Query: 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW---IERMKVRY 333
            Y + G     L  F  +  R       + L+ + A C    + ++ KW   I  + +++
Sbjct: 206 AYIRNGLCKESLRCFSWM-FRVHKEINSTTLSTMLAGCG---SVDNLKWGRGIHSLVLKF 261

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
                +     LI+    AGR EDAE +   M  E D   W ++++  A  G    A K+
Sbjct: 262 GWNSNVCASNTLITMYSDAGRCEDAELVFQGM-VEKDMISWNSMMACYAQDGNCLDALKL 320


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/586 (30%), Positives = 310/586 (52%), Gaps = 33/586 (5%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  A K    +D  +   L+  Y+    ++ +  +F+ +   ++V+W+ +I  +  S L
Sbjct: 144 IHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGL 203

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA--------SLSHAFLFG------------ 119
             +  L        +  P++  L+++   C          + H F+              
Sbjct: 204 FNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSA 263

Query: 120 -----LSLHSLSLKLSLHDKP-----FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCY 169
                 S  S+ L L+L +K         +A+V  YS+    +NA+ VF+++ ++D+VC+
Sbjct: 264 LVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCW 323

Query: 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
            AMI G+A++    ++L++F +M+S  +      +   + A A L A++Q + IH     
Sbjct: 324 SAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDK 383

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
           +G    + +   LI+ Y K G +  ARR+FD+ +   N I+W  M++ +A  GD  + L 
Sbjct: 384 NGFGGALPINNALIEMYAKCGSLERARRIFDK-MPRKNVISWTCMISAFAMHGDAGSALR 442

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
            FH +E     P+  +F+ VL A  +AGL  E  K    M   + + P   HY C++   
Sbjct: 443 FFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLF 502

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409
           GRA  L +A  +  AMP  P+  +W +L++   +HG+ ++     KRL++++P  D A+V
Sbjct: 503 GRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHV 562

Query: 410 IVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYT 469
            ++N+ +   RW++V +VRK+MK + + KE G S  E+  ++H FL  DR H+  ++IY 
Sbjct: 563 FLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYE 622

Query: 470 KLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIV 529
           KL E++ + + +GY P    +L ++ + EK+E + +HSEKLAL +GL+     G  +RI+
Sbjct: 623 KLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGT-GSCIRII 681

Query: 530 KNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           KNLR+C DCH   K  S+V EREIVVRD  R+H + +G C+C D W
Sbjct: 682 KNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 197/449 (43%), Gaps = 41/449 (9%)

Query: 16  TDPRIVHARALKSSQADRS---IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           T  + VHA+ L+S + DRS   +   +I++ + S+ L Y+L +FN IP P        + 
Sbjct: 37  THLKQVHAQILRS-KLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLR 95

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
             S S       L   R  T     ++ +   L K  + +  + + GL +H L+ KL   
Sbjct: 96  ELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVK-SLVEGLEIHGLAAKLGFD 154

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
             PF  + LV  Y+       A+ +FD++  RDVV +  MI G+ Q+    D+L +F +M
Sbjct: 155 SDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEM 214

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG--------------------HAVVSGL 232
           ++ +V      +S  L A      +   ++IH                     +A    +
Sbjct: 215 KNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSM 274

Query: 233 D-----------RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
           D           +N++  T ++ GY K G + +AR VF++ +   + + W+AM++GYA+ 
Sbjct: 275 DLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKK-DLVCWSAMISGYAES 333

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
                 L LF+ ++  G  PD+ + L+V+TA  + G A +  KWI     +      L  
Sbjct: 334 DSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLG-ALDQAKWIHLFVDKNGFGGALPI 392

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
              LI    + G LE A RI   MP   +   W  ++S  A+HG A  A +   ++ D N
Sbjct: 393 NNALIEMYAKCGSLERARRIFDKMP-RKNVISWTCMISAFAMHGDAGSALRFFHQMEDEN 451

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
              +   +    VL        V E RK+
Sbjct: 452 IEPNG--ITFVGVLYACSHAGLVEEGRKI 478


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 193/591 (32%), Positives = 310/591 (52%), Gaps = 39/591 (6%)

Query: 21  VHARALKSSQADRSI----YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           +HAR LK+     S     + +   + + S+ L Y+  +F+    P+   W  +I   S 
Sbjct: 62  IHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSC 121

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           S       L   R    S   N  T  SL K C++LS A      +H+   KL   +  +
Sbjct: 122 SDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLS-ALEETTQIHAQITKLGYENDVY 180

Query: 137 CGSALVHFYS-------------RFRSPDN------------------AKKVFDEIRERD 165
             ++L++ Y+             R   PD                   A  +F ++ E++
Sbjct: 181 AVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKN 240

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
            + +  MI G+ Q     ++L +F +M++SDV      ++ AL A A+L A+EQ + IH 
Sbjct: 241 AISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHS 300

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           +   + +  + ++G  LID Y K G + +A  VF +N+   +  AW A+++GYA  G   
Sbjct: 301 YLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVF-KNIQRKSVQAWTALISGYAYHGHGR 359

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
             +  F  ++  G  P+  +F  VLTA    GL  E +     M+  Y L+P +EHY C+
Sbjct: 360 EAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCV 419

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +  + RAG L++A+R    MP +P+A +W ALL    IH   ++  ++G+ LI I+PY  
Sbjct: 420 VDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHG 479

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             YV  AN+ +   +WD+ AE R++MK++ V K  G S I ++G  H FLAGDR H   E
Sbjct: 480 GRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIE 539

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWY-HSEKLALAFGLVSGAPRGK 524
            I +K   +  + E  GYVP  ++ML ++ D ++RE + + HSEKLA+ +GL+   P G 
Sbjct: 540 KIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLIKTKP-GT 598

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           T+RI+KNLR+C+DCH+  K IS++ +R+IV+RD  R+H F +G C+CGD W
Sbjct: 599 TIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 119/261 (45%), Gaps = 8/261 (3%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           ++ H    +  + D   +N++I  Y+K+  +  +L LF  +   N +SWT +IS +  + 
Sbjct: 196 KLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAG 255

Query: 79  L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           +   +L +F  M         P+  +LA+    CA L  A   G  +HS   K  +    
Sbjct: 256 MHKEALQLFHEMQNS---DVEPDNVSLANALSACAQLG-ALEQGKWIHSYLTKTRIRMDS 311

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
             G  L+  Y++      A +VF  I+ + V  + A+I G+A +    +++S F +M+  
Sbjct: 312 VLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKM 371

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG-LIDGYGKAGIVSD 254
            +   +   +  L A +    +E+ ++I  +       +  I   G ++D   +AG++ +
Sbjct: 372 GIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDE 431

Query: 255 ARRVFDENLSVLNSIAWNAMM 275
           A+R   E     N++ W A++
Sbjct: 432 AKRFIQEMPLKPNAVIWGALL 452



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 82/190 (43%), Gaps = 6/190 (3%)

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLID---GYGKAGIVSDARRVFDENLSVLNSIAW 271
           +  E+ + IH   + +GL ++    T  +        +  +  A+ VFD      ++  W
Sbjct: 54  SKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFD-GFDRPDTFLW 112

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
           N M+ G++   +    L L+  +       + Y+F ++L A  N     E+ + I     
Sbjct: 113 NLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQ-IHAQIT 171

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
           +   E  +     LI++    G  + A  +   +P +PDA  W +++   A  GK D+A 
Sbjct: 172 KLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIP-KPDAVSWNSVIKGYAKAGKMDIAL 230

Query: 392 KMGKRLIDIN 401
            + +++++ N
Sbjct: 231 TLFRKMVEKN 240


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/390 (39%), Positives = 235/390 (60%), Gaps = 2/390 (0%)

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           L++F +M+ S + +    +   + A AEL A+ Q    H + +   L  N  VGT LID 
Sbjct: 135 LTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDM 194

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K G +  A ++FD+ L   +++ +NAM+ G+A  G     L+LF  + + G APD+ +
Sbjct: 195 YSKCGCLDLACQLFDQ-LPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVT 253

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
            +  + +  + GL  E     E MK  Y +EP LEHY CL+  +GRAGRL +AE   + M
Sbjct: 254 LVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNM 313

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           P +P+A +WR+LL  + +HG  ++   + K LI + P     YV+++N+ + + RWD+V 
Sbjct: 314 PMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVK 373

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
            VRK+MKD  + K  G S +EV G +H FL GD+ H R+++IY KL E+       G+ P
Sbjct: 374 RVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKP 433

Query: 486 VWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYI 545
              E+L ++ + EK +AL YHSE+LA+AF L++ +     +RI+KNLR+C DCH S K I
Sbjct: 434 RTLEVLFDIEEEEKEDALSYHSERLAIAFALIA-SHHCAPIRIIKNLRVCGDCHTSSKLI 492

Query: 546 SRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           S++ EREI+VRD NR+H F  G+C+C D W
Sbjct: 493 SKIYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 152/367 (41%), Gaps = 65/367 (17%)

Query: 11  PQNTSTDPRIVHARALKSSQADRSIYNNLITN--------------YSKSNLLSYSLRLF 56
           P  +S  P +      K+    + ++ ++IT                S + + +++L +F
Sbjct: 4   PNPSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIF 63

Query: 57  NHIPSPNIVSWTALISAHSN----SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS- 111
           NHIP+P I  +  LIS+ +N    + ++ +++  +L H TL   PN  T  SLFK C S 
Sbjct: 64  NHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLK--PNGFTFPSLFKACGSQ 121

Query: 112 --LSHAFLF--------------------------------------GLSLHSLSLKLSL 131
             L H                                          G   H   LK +L
Sbjct: 122 PWLRHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNL 181

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F G+AL+  YS+    D A ++FD++  RD +CY AMI GFA +     +L +F  
Sbjct: 182 KLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKK 241

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           M    +      +   + + + +  +E+ C V      V G++  +     L+D  G+AG
Sbjct: 242 MTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAG 301

Query: 251 IVSDA-RRVFDENLSVLNSIAWNAMMAGYAQQGD-QSTVLELFHLLEMRGFAPDEYSFLA 308
            + +A  RV +  +   N++ W +++      G+ +   + L HL+++       Y  L+
Sbjct: 302 RLREAEERVLNMPMKP-NAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLS 360

Query: 309 VLTALCN 315
            + A  N
Sbjct: 361 NMYASIN 367


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 186/569 (32%), Positives = 303/569 (53%), Gaps = 44/569 (7%)

Query: 23  ARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS 80
           A+ +     +RSI   N++I  +    L+  + +LF+ +   ++V+W+ALI+    + + 
Sbjct: 163 AKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMY 222

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140
                + +    +  + ++    S    CA+L    + G  +HSLSLK+         +A
Sbjct: 223 EEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM-GKLIHSLSLKIGTESYINLQNA 281

Query: 141 LVHFYSRFRS-------------------------------PDNAKKVFDEIRERDVVCY 169
           L++ YS+                                   DNAK +FD + E+DVV +
Sbjct: 282 LIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSW 341

Query: 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
            +MI G+AQN    ++L++F +M+ S        +   + A A LAA+EQ + +H +   
Sbjct: 342 SSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKR 401

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVF----DENLSVLNSIAWNAMMAGYAQQGDQS 285
           +GL  NVI+GT LID Y K G V  A  VF    ++ +S      WNA++ G A  G   
Sbjct: 402 NGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIS-----TWNALILGLAMNGLVE 456

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
           + L++F  ++     P+E +F+ VL A  + GL  E +     M   +K++P ++HY C+
Sbjct: 457 SSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCM 516

Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +  +GRAG+L++AE +   MP  PD A W ALL     HG ++M  ++G++LI++ P  D
Sbjct: 517 VDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHD 576

Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
             +V+++N+ +  G+WD+V E+R +M   RV K  G S IE  G +H FLAGD+ H   +
Sbjct: 577 GFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMD 636

Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT 525
            I   L E+  + +  GY P  +E+L +V + EK   L+ HSEKLA+AFGL++ +P    
Sbjct: 637 AIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPP-TP 695

Query: 526 LRIVKNLRICRDCHESFKYISRVVEREIV 554
           +RI+KNLRIC DCH + K IS+   R+IV
Sbjct: 696 IRIMKNLRICNDCHTAAKLISKAFCRKIV 724



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/446 (22%), Positives = 175/446 (39%), Gaps = 105/446 (23%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAH--SNSP-LSLNIFLSMLRHPTLSFLPNQRTLASL 105
           + Y+ R+FN I + N   W  +I A+  +NSP  +  ++ SML     ++L        L
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLS----NYLGADNYTYPL 83

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
                S+  +      +H+  LKL      +  + L++ +S   +  +A +VF+E    D
Sbjct: 84  LIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLD 143

Query: 166 VVCYGAMIVGF----------------------AQNSRL---------VDSLSVFADMRS 194
            V + +++ G+                      A NS +         V++  +F +M  
Sbjct: 144 SVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLE 203

Query: 195 SDVGS----------------------TMYCVSGALRAAAELAAMEQC---------RVI 223
            D+ +                       M+ +   +     ++A+  C         ++I
Sbjct: 204 KDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLI 263

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE----NLSVLNS----------- 268
           H  ++  G +  + +   LI  Y K G +  AR++FDE    +L   NS           
Sbjct: 264 HSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLV 323

Query: 269 ---------------IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
                          ++W++M++GYAQ       L LF  ++M GF PDE + ++V++A 
Sbjct: 324 DNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA- 382

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
           C    A E  KW+     R  L   +   T LI    + G +E A  +   M  E   + 
Sbjct: 383 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGIST 441

Query: 374 WRALLSFSAIHG----KADMASKMGK 395
           W AL+   A++G      DM S M K
Sbjct: 442 WNALILGLAMNGLVESSLDMFSNMKK 467



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 134 KPFCGSALVHFYSRFR--SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
           + +  S L+ F + F     D  +++F+ I   +   +  MI  + Q +    + +++  
Sbjct: 9   ETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKS 68

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M S+ +G+  Y     ++A +   +  + + +H H +  G D +V V   LI+ +     
Sbjct: 69  MLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSN 128

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           ++DA RVF+E+ SVL+S++WN+++AGY + G+      ++H +  R          +++ 
Sbjct: 129 MTDACRVFNES-SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASN----SMIV 183

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
                GL  E+ K  + M     LE  +  ++ LI+   +    E+A R  + M
Sbjct: 184 LFGMRGLVVEACKLFDEM-----LEKDMVTWSALIACFQQNEMYEEAIRTFVGM 232


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 179/549 (32%), Positives = 298/549 (54%), Gaps = 15/549 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVS---WTALISAHS--NSPL-SLNIFLSML 88
           + + LIT +S    L  + ++F+ +   ++++   W A+   +S   SP  +L +++ ML
Sbjct: 176 LLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDML 235

Query: 89  RHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
                SF+ P   +++   K C  L      G  +H+  +K          + L+  Y  
Sbjct: 236 ----CSFIEPGNFSISVALKACVDLKD-LRVGRGIHAQIVKRKEKVDQVVYNVLLKLYME 290

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
               D+A+KVFD + ER+VV + ++I   ++  R+ +  ++F  M+   +G +   ++  
Sbjct: 291 SGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTI 350

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A + +AA+   + IH   + S    +V +   L+D YGK G V  +RRVFD  L+  +
Sbjct: 351 LPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTK-D 409

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
             +WN M+  YA  G+   V+ LF  +   G APD  +F+A+L+   + GL        E
Sbjct: 410 LASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFE 469

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
           RMK  +++ P LEHY CL+  +GRAG++++A ++   MPF+P A++W +LL+   +HG  
Sbjct: 470 RMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNV 529

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
            +     K L  + P++   YV+V+N+ +    WD V ++R++MK R V+KE G SW++V
Sbjct: 530 SVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQV 589

Query: 448 KGKVHVFLAGDRMHERTEDIYTKL-AELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           K K+ +F+AG     R  D Y K+  EL E  E+ GY P    +LH+V +  K   +  H
Sbjct: 590 KDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGH 649

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SE+LA  + L+     G  +RI KNLR+C DCH   K +S+V  R IV+RD  R+H F++
Sbjct: 650 SERLATTYSLIHTG-EGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVD 708

Query: 567 GSCTCGDLW 575
           G C+C D W
Sbjct: 709 GICSCKDYW 717



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 146/301 (48%), Gaps = 12/301 (3%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLK-LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           L   C S + +   G+ + SL L   SL   P   S L+  +S  R  D A+K+FD++ +
Sbjct: 144 LLHACIS-AKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTD 202

Query: 164 RDVV---CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
             ++    + AM +G+++N    D+L V+ DM  S +    + +S AL+A  +L  +   
Sbjct: 203 SSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVG 262

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           R IH   V      + +V   L+  Y ++G+  DAR+VFD  +S  N + WN++++  ++
Sbjct: 263 RGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFD-GMSERNVVTWNSLISVLSK 321

Query: 281 QGDQSTVLELFHLL--EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           +     +  LF  +  EM GF+   ++ L  +   C+   A  + K I    ++ K +P 
Sbjct: 322 KVRVHEMFNLFRKMQEEMIGFS---WATLTTILPACSRVAALLTGKEIHAQILKSKEKPD 378

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           +     L+   G+ G +E + R+   M    D A W  +L+  AI+G  +    + + +I
Sbjct: 379 VPLLNSLMDMYGKCGEVEYSRRVFDVM-LTKDLASWNIMLNCYAINGNIEEVINLFEWMI 437

Query: 399 D 399
           +
Sbjct: 438 E 438



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 124/278 (44%), Gaps = 21/278 (7%)

Query: 19  RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA+ +K   + D+ +YN L+  Y +S L   + ++F+ +   N+V+W +LIS  S  
Sbjct: 263 RGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKK 322

Query: 78  PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-D 133
                  N+F  M +   + F  +  TL ++   C+ ++ A L G  +H+  LK     D
Sbjct: 323 VRVHEMFNLFRKM-QEEMIGF--SWATLTTILPACSRVA-ALLTGKEIHAQILKSKEKPD 378

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
            P   S L+  Y +    + +++VFD +  +D+  +  M+  +A N  + + +++F  M 
Sbjct: 379 VPLLNS-LMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMI 437

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYG 247
            S V          L   ++    E     +G ++   +     V         L+D  G
Sbjct: 438 ESGVAPDGITFVALLSGCSDTGLTE-----YGLSLFERMKTEFRVSPALEHYACLVDILG 492

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           +AG + +A +V +      ++  W +++      G+ S
Sbjct: 493 RAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVS 530


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 181/575 (31%), Positives = 306/575 (53%), Gaps = 29/575 (5%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +H  ++K   + D SI N+L + YSK   L  +++ F  I   N++SWT +ISA   +  
Sbjct: 192 IHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGE 251

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +   L  F+ ML        PN+ TL S    C  +  +   G  +HSL++KL       
Sbjct: 252 AATGLQFFVEMLSE---CVEPNEFTLTSALSLCCVM-QSLDIGTQIHSLTIKLGFESNLP 307

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVG------FAQNSRL-----VDS 185
             +++++ Y +      AKK+FDE+    +V + AMI G      FA++         ++
Sbjct: 308 IKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEA 367

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           LS+F  +  S +   ++  S  L   + L A+EQ   +H   + +G   +V+VGT L++ 
Sbjct: 368 LSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNM 427

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           Y K G +  A + F E +S+   I+W +M+ GYAQ G     L LF  + + G  P++ +
Sbjct: 428 YNKCGSIERASKAFVE-MSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKIT 486

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
           F+ VL+A  +AG+  E+  + + MK  YK+ P ++HY CLI    R GRL++A      M
Sbjct: 487 FVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEM 546

Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
             EP+  +W  L++     GK ++     ++L+++ P D   Y ++ N+    G+W EV+
Sbjct: 547 DLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVS 606

Query: 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVP 485
            VRK+MK+ ++ +    SWI +K K++ F    R H ++ ++Y  L  L E+ +  GY  
Sbjct: 607 RVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHAQSGEMYELLGNLHEKAKSFGY-- 664

Query: 486 VWDEMLH------NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCH 539
            W+E L       +  + +   ++ YHSEKLA+AFGL++ +     +R+ K++ +CRDCH
Sbjct: 665 EWEESLEVTDEEEDADEEKALTSIVYHSEKLAIAFGLLNTS-NAVPIRVTKSISMCRDCH 723

Query: 540 ESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
              + IS +  REI++RD  R H+F+NG C+CGD 
Sbjct: 724 NFIRIISLLSAREIIIRDSKRLHKFINGHCSCGDF 758



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/445 (22%), Positives = 205/445 (46%), Gaps = 25/445 (5%)

Query: 7   QQPQPQNTSTDPRIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV 65
           Q+   +   +D + +HA  +K+ +  D  +   L+  Y+K   +  + ++F+ +P  N+V
Sbjct: 77  QECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELPRRNVV 136

Query: 66  SWTALISA--HSNSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
           SWT L++   H + P L++ +F  ML        P   TL +     + L H+   G  +
Sbjct: 137 SWTTLMTGYVHDSKPELAVQVFREMLEAGAY---PTNYTLGTALSASSDL-HSKELGKQI 192

Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
           H  S+K  +      G++L   YS+  S + A K F  IR+++V+ +  +I  +  N   
Sbjct: 193 HGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEA 252

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
              L  F +M S  V    + ++ AL     + +++    IH   +  G + N+ +   +
Sbjct: 253 ATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSI 312

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-----------QSTVLELF 291
           +  Y K G + +A+++FDE +  ++ + WNAM+AG+A+  D            +  L +F
Sbjct: 313 MYLYLKCGWIHEAKKLFDE-METISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIF 371

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             L   G  PD ++F +VL+   +     + E+ +    ++      +   T L++   +
Sbjct: 372 LKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQ-VHAQTIKTGFLSDVVVGTALVNMYNK 430

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYV 409
            G +E A +  + M      + W ++++  A +G+   A  + +  RL  + P +   +V
Sbjct: 431 CGSIERASKAFVEMSIRTLIS-WTSMITGYAQNGQPQQALLLFEDMRLAGVRP-NKITFV 488

Query: 410 IVANVLSGVGRWDEVAEVRKVMKDR 434
            V +  S  G  DE  +  ++MK+ 
Sbjct: 489 GVLSACSHAGMVDEALDYFQMMKNE 513


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/442 (38%), Positives = 246/442 (55%), Gaps = 18/442 (4%)

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
           F   +  + +F +I++ ++  +  MI G   N    D++  +  MRS       +     
Sbjct: 59  FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFV 118

Query: 208 LRAAAELAAMEQCRVIHGHAVVS---------GLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           L+A A L  ++    IH   V           G+ RNV VGT L+D Y K G +  AR V
Sbjct: 119 LKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSV 178

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-----GFAPDEYSFLAVLTAL 313
           FD  +   + ++W AM+ GYA  G     ++LF  L+M+     G  PD  +F+ +L   
Sbjct: 179 FD-GMPEKDIVSWGAMIQGYALNGLPKEAIDLF--LQMQRENKLGIKPDGNTFIGLLCGC 235

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            +AGL  E  ++   M   + L P +EHY C++  +GRAG L++A ++   MP E +A V
Sbjct: 236 THAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIV 295

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL    IH    +A    K+LI++ P++   YV+++N+ S   +WDE A+VR  M +
Sbjct: 296 WGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNE 355

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           +R++K  G SWIEV G VH FL GD+ H  +E IY KL EL ++ +  GYVP  D +L +
Sbjct: 356 KRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFD 415

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           + + EK   L  HSEKLA+AFGL+S  P    +R+VKNLR+C DCH + K IS +  REI
Sbjct: 416 IEEEEKEHFLGCHSEKLAIAFGLISATPTA-VIRVVKNLRVCGDCHMAIKLISSITGREI 474

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
            VRD NR+H F  GSC+C D W
Sbjct: 475 TVRDNNRFHCFREGSCSCNDYW 496



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 142/313 (45%), Gaps = 36/313 (11%)

Query: 42  NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH-SNSPLSLNI-FLSMLRHPTLSFLPNQ 99
           ++S +N   Y+  LF+ I  PNI  W  +I    SN      I F  ++R  +  FLPN 
Sbjct: 58  DFSDTN---YTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMR--SEGFLPNN 112

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD---------KPFCGSALVHFYSRFRS 150
            T   + K CA L    L G+ +H+L +K  +H            F G++LV  Y++  +
Sbjct: 113 FTFPFVLKACARLLDLQL-GVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGN 171

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV------GSTMYCV 204
            + A+ VFD + E+D+V +GAMI G+A N    +++ +F  M+  +       G+T    
Sbjct: 172 MEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFI-- 229

Query: 205 SGALRAAAELAAMEQC-RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
            G L        +++  R  +       L  ++     ++D  G+AG++ +A ++     
Sbjct: 230 -GLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMP 288

Query: 264 SVLNSIAWNAMMAGYAQQGD-QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
              N+I W A++       D Q   L L  L+E+  +    Y    +L+ + +A L    
Sbjct: 289 MEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNY---VLLSNIYSANL---- 341

Query: 323 EKWIERMKVRYKL 335
            KW E  KVR  +
Sbjct: 342 -KWDEAAKVRLSM 353


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 179/549 (32%), Positives = 298/549 (54%), Gaps = 15/549 (2%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVS---WTALISAHS--NSPL-SLNIFLSML 88
           + + LIT +S    L  + ++F+ +   ++++   W A+   +S   SP  +L +++ ML
Sbjct: 169 LLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDML 228

Query: 89  RHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
                SF+ P   +++   K C  L      G  +H+  +K          + L+  Y  
Sbjct: 229 ----CSFIEPGNFSISVALKACVDLKD-LRVGRGIHAQIVKRKEKVDQVVYNVLLKLYME 283

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
               D+A+KVFD + ER+VV + ++I   ++  R+ +  ++F  M+   +G +   ++  
Sbjct: 284 SGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTI 343

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A + +AA+   + IH   + S    +V +   L+D YGK G V  +RRVFD  L+  +
Sbjct: 344 LPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTK-D 402

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
             +WN M+  YA  G+   V+ LF  +   G APD  +F+A+L+   + GL        E
Sbjct: 403 LASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFE 462

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
           RMK  +++ P LEHY CL+  +GRAG++++A ++   MPF+P A++W +LL+   +HG  
Sbjct: 463 RMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNV 522

Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
            +     K L  + P++   YV+V+N+ +    WD V ++R++MK R V+KE G SW++V
Sbjct: 523 SVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQV 582

Query: 448 KGKVHVFLAGDRMHERTEDIYTKL-AELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           K K+ +F+AG     R  D Y K+  EL E  E+ GY P    +LH+V +  K   +  H
Sbjct: 583 KDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGH 642

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SE+LA  + L+     G  +RI KNLR+C DCH   K +S+V  R IV+RD  R+H F++
Sbjct: 643 SERLATTYSLIHTG-EGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVD 701

Query: 567 GSCTCGDLW 575
           G C+C D W
Sbjct: 702 GICSCKDYW 710



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 146/301 (48%), Gaps = 12/301 (3%)

Query: 105 LFKTCASLSHAFLFGLSLHSLSLK-LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           L   C S + +   G+ + SL L   SL   P   S L+  +S  R  D A+K+FD++ +
Sbjct: 137 LLHACIS-AKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTD 195

Query: 164 RDVVC---YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
             ++    + AM +G+++N    D+L V+ DM  S +    + +S AL+A  +L  +   
Sbjct: 196 SSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVG 255

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           R IH   V      + +V   L+  Y ++G+  DAR+VFD  +S  N + WN++++  ++
Sbjct: 256 RGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFD-GMSERNVVTWNSLISVLSK 314

Query: 281 QGDQSTVLELFHLL--EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           +     +  LF  +  EM GF+   ++ L  +   C+   A  + K I    ++ K +P 
Sbjct: 315 KVRVHEMFNLFRKMQEEMIGFS---WATLTTILPACSRVAALLTGKEIHAQILKSKEKPD 371

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           +     L+   G+ G +E + R+   M    D A W  +L+  AI+G  +    + + +I
Sbjct: 372 VPLLNSLMDMYGKCGEVEYSRRVFDVM-LTKDLASWNIMLNCYAINGNIEEVINLFEWMI 430

Query: 399 D 399
           +
Sbjct: 431 E 431



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 124/278 (44%), Gaps = 21/278 (7%)

Query: 19  RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA+ +K   + D+ +YN L+  Y +S L   + ++F+ +   N+V+W +LIS  S  
Sbjct: 256 RGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKK 315

Query: 78  PLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-D 133
                  N+F  M +   + F  +  TL ++   C+ ++ A L G  +H+  LK     D
Sbjct: 316 VRVHEMFNLFRKM-QEEMIGF--SWATLTTILPACSRVA-ALLTGKEIHAQILKSKEKPD 371

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
            P   S L+  Y +    + +++VFD +  +D+  +  M+  +A N  + + +++F  M 
Sbjct: 372 VPLLNS-LMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMI 430

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYG 247
            S V          L   ++    E     +G ++   +     V         L+D  G
Sbjct: 431 ESGVAPDGITFVALLSGCSDTGLTE-----YGLSLFERMKTEFRVSPALEHYACLVDILG 485

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           +AG + +A +V +      ++  W +++      G+ S
Sbjct: 486 RAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVS 523


>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
 gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 183/537 (34%), Positives = 295/537 (54%), Gaps = 18/537 (3%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRHPTLSFL---PNQRTL 102
           LS+++++F +IP P    W A+I   +  S+  L+ + + SML+  + S      +  T 
Sbjct: 53  LSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTC 112

Query: 103 ASLFKTCA-SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
           +   K CA +L  + +    LH    +  L       + L+  YS+     +A K+FDE+
Sbjct: 113 SFTLKACARALCSSAMD--QLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEM 170

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
             RDV  + A+I G    +R  +++ ++  M +  +  +   V  AL A + L  +++  
Sbjct: 171 PVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGE 230

Query: 222 -VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
            + HG++     + NVIV    ID Y K G V  A +VF++     + + WN M+ G+A 
Sbjct: 231 NIFHGYS-----NDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAV 285

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
            G+    LE+F  LE  G  PD+ S+LA LTA  +AGL          M  +  +E  ++
Sbjct: 286 HGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERNMK 344

Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
           HY C++  + RAGRL +A  I  +M   PD  +W++LL  S I+   +MA    + + ++
Sbjct: 345 HYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEM 404

Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
              +D  +V+++NV +  GRW +V  VR  M+ ++V+K  G S+IE KG +H F   D+ 
Sbjct: 405 GVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKS 464

Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGL--VS 518
           HE+  +IY K+ E+  +    GYV     +LH++G+ EK  AL YHSEKLA+A+GL  + 
Sbjct: 465 HEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMD 524

Query: 519 GAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           GA     +R++ NLRIC DCH  FK+IS++ +REI+VRD  R+HRF +GSC+C D W
Sbjct: 525 GADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 102/248 (41%), Gaps = 6/248 (2%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH 90
           AD  +   L+  YSK+  L  + +LF+ +P  ++ SW ALI+   +   +        R 
Sbjct: 142 ADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRM 201

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
            T     ++ T+ +    C+ L          H  S     +D     +A +  YS+   
Sbjct: 202 ETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYS-----NDNVIVSNAAIDMYSKCGF 256

Query: 151 PDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
            D A +VF++   ++ VV +  MI GFA +     +L +F  +  + +         AL 
Sbjct: 257 VDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALT 316

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           A      +E    +  +    G++RN+     ++D   +AG + +A  +      + + +
Sbjct: 317 ACRHAGLVEYGLSVFNNMACKGVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPV 376

Query: 270 AWNAMMAG 277
            W +++  
Sbjct: 377 LWQSLLGA 384


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/432 (37%), Positives = 258/432 (59%), Gaps = 2/432 (0%)

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           Y++    + A+++F E+  +D V +  MIVGFA N    ++ S F +++   +      +
Sbjct: 213 YTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSL 272

Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
           +G L A A+  A+E  +++HG    SGL   V V   L+D Y K G V  A+ VF+  ++
Sbjct: 273 TGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMN 332

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
             N ++W +MMA  A  G     + +FH +E  G  PDE +F+++L A  +AGL  +  +
Sbjct: 333 ERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCE 392

Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
           + ++MK  Y +EP +EHY C++   GRAG+L+ A      MP    A +WR LL   ++H
Sbjct: 393 YFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMH 452

Query: 385 GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSW 444
           G   +A ++ +RL +++P + S +V+++N  +  G+W + A VR+ M ++R+ K  G S 
Sbjct: 453 GDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSM 512

Query: 445 IEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE-RLGYVPVWDEMLHNVGDREKREAL 503
           IEV   ++ FLAG + ++ TE+ Y KL E++       GYVP    +LH++ + EK  ++
Sbjct: 513 IEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSV 572

Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
             HSEKLA+AFG ++   +G+T+RIVKNLRICRDCH   K IS++ + EIVVRD +R+H 
Sbjct: 573 SVHSEKLAVAFG-IARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHS 631

Query: 564 FLNGSCTCGDLW 575
           F +G C+C D W
Sbjct: 632 FKDGYCSCRDYW 643



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 36/283 (12%)

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF--YSRFRSPDNAKKVFDEI 161
           SL   C SL+        +H+  LKL L   PF    L+H    S   S D A ++F   
Sbjct: 10  SLLNICKSLTTF----KQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYT 65

Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST-MYCVSGALRAAAELAAMEQC 220
              DV  +  +I G  ++ R  DSL  F +MR +       +  +  ++AAA L ++   
Sbjct: 66  PNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVG 125

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
             +H  A+V GLD ++ VGT LI  YG+ G V  AR+VFDE +   N+IAWNAM+    +
Sbjct: 126 IQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDE-MPEPNAIAWNAMVTACCR 184

Query: 281 QGDQSTVLELFHLLEMRGF---------------------------APDEYSFLAVLTAL 313
            GD     ELF L+ +R                               D+ S+  ++   
Sbjct: 185 GGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGF 244

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            + G   E+  +   ++ R  + P     T ++SA  +AG LE
Sbjct: 245 AHNGYFEEAFSFFRELQ-RKGMRPNETSLTGVLSACAQAGALE 286



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 182/426 (42%), Gaps = 55/426 (12%)

Query: 16  TDPRIVHARALKSS-QADRSIYNNLITN--YSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           T  + +HA  LK   ++D  I   L+ +   S S+ L Y+ RLF + P+P++     LI 
Sbjct: 19  TTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIR 78

Query: 73  A--HSNSPL-SLNIFLSMLRHPTLSF-LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
               S+ P  SL  F+ M R+   SF  P+  + A + K  A+L  +   G+ LH  +L 
Sbjct: 79  GLYESDRPQDSLLKFIEMRRN---SFSPPDSFSFAFIVKAAANL-RSVRVGIQLHCQALV 134

Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188
             L    F G+ L+  Y        A+KVFDE+ E + + + AM+               
Sbjct: 135 HGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMV--------------- 179

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
                      T  C  G ++   EL  +                RN++    ++ GY K
Sbjct: 180 -----------TACCRGGDMKGGRELFDLMPV-------------RNLMSWNVMLAGYTK 215

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
           AG +  AR +F E + + + ++W+ M+ G+A  G        F  L+ +G  P+E S   
Sbjct: 216 AGELELAREMFLE-MPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTG 274

Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           VL+A   AG A E  K +     +  L   +     L+    + G +  A+ +   +  E
Sbjct: 275 VLSACAQAG-ALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNE 333

Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAE 426
            +   W ++++  A+HG  + A  +  ++ +  I P D+ A++ +    S  G  ++  E
Sbjct: 334 RNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRP-DEIAFISLLYACSHAGLVEQGCE 392

Query: 427 VRKVMK 432
               MK
Sbjct: 393 YFDKMK 398


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 183/519 (35%), Positives = 283/519 (54%), Gaps = 7/519 (1%)

Query: 60  PSPNIVSWTALI--SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
           PSP+   + +L   +A    P +   F   L    L F  +     S+ K CA LS A  
Sbjct: 69  PSPDSFLFCSLTRAAARRGLPAAALAFYRRLLAAALPF--SSFAFTSVAKACADLS-ALR 125

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G+ +H+ ++ L      F  +ALV  YS+    D A+K+FD IR+R VV + AMI G+ 
Sbjct: 126 AGMGVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYE 185

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN     ++ V+ +MR +            L A A+  A++    +    V   ++ NV+
Sbjct: 186 QNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVV 245

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           +G  L++ Y + G+V+ AR  FD  L   N + W +M+AGY   G     ++LF L+  +
Sbjct: 246 LGAALVNMYARCGLVNKAREWFD-MLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQ 304

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  P++ +F+AVL+A  +AGL  +       MK  Y L P  EHY  ++   GRAG L+D
Sbjct: 305 GPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDD 364

Query: 358 A-ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           A + I  ++P EP   VW A+L    +H    +  ++ +RLI + P + S  V+++N+ +
Sbjct: 365 AMQFIHDSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSNIYA 424

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
             G+ + V +VR  M  RR++K  G S IE+ G  HVF  G++ H +T +IY  L +L+ 
Sbjct: 425 LSGKMNHVEKVRNTMIKRRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQYLEKLIH 484

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
                GY+P  D +LH + + E+  AL YH EKLA+AFGL+  +     +RI+KNLRIC 
Sbjct: 485 RITDAGYMPETDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTAPIRIIKNLRICG 544

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH + KY+S V  REI+VRD++R+H F  G C+C + W
Sbjct: 545 DCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 583


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 186/573 (32%), Positives = 318/573 (55%), Gaps = 25/573 (4%)

Query: 16   TDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL--IS 72
            T  + VH  A+K     D S+ N L+  Y +   +S   ++FN +   + VSW  +  + 
Sbjct: 498  TAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVM 557

Query: 73   AHSNSPLS--LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
            A S +P+S  + +F +M+R      +PN+ T  +L    + LS     G  +H+  +K  
Sbjct: 558  ASSQTPISEIVKVFNNMMRG---GLIPNKVTFINLLAALSPLS-VLELGKQVHAAVMKHG 613

Query: 131  LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVF 189
            + +     +AL+  Y++     + + +F  + +R D + + +MI G+  N  L +++   
Sbjct: 614  VMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCV 673

Query: 190  ADMRSSDVGSTMYCVSGA--LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
              M  S  G  M C + +  L A A +AA+E+   +H   + S L+ +V+V + L+D Y 
Sbjct: 674  WLMIHS--GQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYS 731

Query: 248  KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
            K G V  A ++F+ +++  N  +WN+M++GYA+ G     +E+F  +     +PD  +F+
Sbjct: 732  KCGRVDYASKLFN-SMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFV 790

Query: 308  AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
            +VL+A  +AGL     ++ E M   + + P +EHY+C+I  +GRAG+++  +     MP 
Sbjct: 791  SVLSACSHAGLVERGLEYFEMMP-DHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPI 849

Query: 368  EPDAAVWRALLSF---SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424
            EP+A +WR +L     S      D+  +  + L++I P +   YV+ +N  +  G W++ 
Sbjct: 850  EPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDT 909

Query: 425  AEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV 484
            A+ R  M+    +KE GRSW+ +   VH F+AGDR H  T++IY KL  L++     GYV
Sbjct: 910  AKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNAGYV 969

Query: 485  PVWDEMLHNVGDREKREALWYHSEKLALAFGLV--SGAPRGKTLRIVKNLRICRDCHESF 542
            P+ +  L+++ +  K E L YHSEKLA+AF L   S  P    +RI+KNLR+C DCH +F
Sbjct: 970  PLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSSGP----IRIMKNLRVCGDCHIAF 1025

Query: 543  KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            +YIS+++ R+I++RD  R+H F +G C+CGD W
Sbjct: 1026 RYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 174/399 (43%), Gaps = 33/399 (8%)

Query: 15  STDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           +  P  +H   +K     D  + N+L+ +Y+K   L+ + ++F+ +P  N VSWT L+S 
Sbjct: 77  ANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSG 136

Query: 74  ---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSLKL 129
              H  +  +  +F +MLR       P   T  +L + C       L F + +H L  K 
Sbjct: 137 YVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKT 196

Query: 130 SLHDKPFCGSALVHFYS--RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
                    +AL+  Y       P  A++VFD    RD++ + A++  +A+   +  + +
Sbjct: 197 EYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFT 256

Query: 188 VFADMRSSD-----------VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           +F DM+  D            GS    ++ A  ++   A ++Q  V     + SG   ++
Sbjct: 257 LFKDMQRGDSRIQLRPTEHTFGSL---ITAASLSSGSSAVLDQVLV---WVLKSGCSSDL 310

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            VG+ L+  + + G+  +A+ +F  +L   N++  N ++ G  +Q      +++F +   
Sbjct: 311 YVGSALVSAFARHGLTDEAKDIF-LSLKQKNAVTLNGLIVGLVRQDFSEEAVKIF-VGTR 368

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC-----LISAMGR 351
                +  +++ +L+AL    ++ E  + I R+   + L  GL          L++   +
Sbjct: 369 NTVDVNADTYVVLLSALAEYSISEEGLR-IGRVVHGHMLRTGLTDLKIAVSNGLVNMYAK 427

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            G +E A +I   M    D   W  ++S    +G  + A
Sbjct: 428 CGAIESASKIFQLME-ATDRISWNTIISALDQNGNCEEA 465



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 162/363 (44%), Gaps = 15/363 (4%)

Query: 26  LKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSL 81
           LKS   +D  + + L++ +++  L   +  +F  +   N V+   LI        S  ++
Sbjct: 302 LKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAV 361

Query: 82  NIFLSMLRHPTLSFLPNQRTLASLFKTCASLS---HAFLFGLSLHSLSLKLSLHD-KPFC 137
            IF+       +    N  T   L    A  S        G  +H   L+  L D K   
Sbjct: 362 KIFVGTRNTVDV----NADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAV 417

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            + LV+ Y++  + ++A K+F  +   D + +  +I    QN    +++  ++ MR S +
Sbjct: 418 SNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCI 477

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             + + +  +L + A L  +   + +H  AV  GLD +  V   L+  YG+ G +SD  +
Sbjct: 478 SPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWK 537

Query: 258 VFDENLSVLNSIAWNAMMAGYA-QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
           VF+ +++  + ++WN MM   A  Q   S ++++F+ +   G  P++ +F+ +L AL   
Sbjct: 538 VFN-SMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPL 596

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            +  E  K +    +++ +         LIS   ++G +   E +   M    DA  W +
Sbjct: 597 SVL-ELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNS 655

Query: 377 LLS 379
           ++S
Sbjct: 656 MIS 658


>gi|357135729|ref|XP_003569461.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Brachypodium distachyon]
          Length = 595

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 302/562 (53%), Gaps = 17/562 (3%)

Query: 22  HARALKSSQADRSIYNNLITNYSKSNLLSYSLRLF-NHIPSPNIVSWTALISAHSNSPLS 80
           H  A+ SS A  S  ++L+T Y++  L    LR F +    P   +W++LIS+ + + L 
Sbjct: 43  HLPAIASSHALLS--HHLLTFYARCALPELCLRAFLDLPAPPPAAAWSSLISSFAQNGLP 100

Query: 81  LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF---LFGLSLHSLSLKLSLHDKPFC 137
              F +  R          R++ S  K  A+ + +    L   +LH L+ K    +  F 
Sbjct: 101 AAAFDAFRRMLAAGVPATDRSIPSAAKAVAAAADSLRPPLAPHALHGLASKTPFAEDVFV 160

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           GSA++  Y++  +  +A+++FDE+ ER+VV + A+I G+A       +L +F       V
Sbjct: 161 GSAVLDMYAKCGNLLDARRLFDEMPERNVVSWSALIGGYADAGMHPAALWIFRSALEEAV 220

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               + VS  +R  A     +    +H  ++ + LD +  VG+ L+  Y K G+V  A R
Sbjct: 221 EVNDFTVSCIVRVCATATLFDLGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDRAYR 280

Query: 258 VF----DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +F    + NL +     WNA++   AQ G  +T  E F  ++  GF P+  +FL +LTA 
Sbjct: 281 IFSAAPERNLGI-----WNAVLNASAQHGHTATAFERFMEMQNDGFRPNYITFLCLLTAC 335

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            +AGL  E +++   MK  Y +EP  EHY  ++  +GR GR+ +A  +  +MP EP  +V
Sbjct: 336 SHAGLVDEGKRYFSLMK-EYTIEPQAEHYAAMVDLLGRVGRITEALELIESMPMEPPESV 394

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL    +   AD A+   KRL         A++++++  +  GR  + A  RK M+D
Sbjct: 395 WGALLMACRMFKDADTAAIAAKRLFQTGSRSSGAHMLLSSTYAAAGRHVDAALARKAMRD 454

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
             VRKE G SW+E  G+VH F++  R H R+++IY  L ++ E+ E  GYV     ++ +
Sbjct: 455 AGVRKETGLSWLEAAGEVHTFVSNCRRHPRSDEIYNVLEKVGEKMEGAGYVADTSAVVKD 514

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V   EK E L YHSE+LA+  GL+   P G  +R++KNLR+C DCH + KY+S+   R +
Sbjct: 515 VAREEKCETLGYHSERLAIGLGLLI-VPEGVPIRVMKNLRVCDDCHNAIKYLSKCTGRVV 573

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           ++RD  R+HRF +G C+CGD W
Sbjct: 574 ILRDNRRFHRFEDGLCSCGDFW 595


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/561 (31%), Positives = 307/561 (54%), Gaps = 19/561 (3%)

Query: 19   RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
            R+VH  ++K+    + S+ N L+  YS  +    + ++F ++   N+VSWTA+I++++ +
Sbjct: 531  RVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRA 590

Query: 78   PLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
             L  +    +L+   L  + P+   + S+    A    +   G S+H  +++  +     
Sbjct: 591  GL-FDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAG-DESLKQGKSVHGYAIRNGMEKLLP 648

Query: 137  CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM--RS 194
              +AL+  Y   R+ + A+ VFD +  +D++ +  +I G+++N+   +S S+F+DM  + 
Sbjct: 649  VANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQF 708

Query: 195  SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                 TM C+   L A A ++++E+ R IH +A+  G   +      L+D Y K G +  
Sbjct: 709  KPNTVTMTCI---LPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLV 765

Query: 255  ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
            AR +FD  L+  N I+W  M+AGY   G     + LF  +   G  PD  SF A+L A C
Sbjct: 766  ARVLFDR-LTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACC 824

Query: 315  NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
            ++GL  E  K+   M+  YK+EP L+HYTC++  +   G L++A     +MP EPD+++W
Sbjct: 825  HSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIW 884

Query: 375  RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
             +LL    IH    +A K+  R+  + P +   YV++AN+ +   RW+ V +++  +  R
Sbjct: 885  VSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGR 944

Query: 435  RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL----GYVPVWDEM 490
             +R+  G SWIEV+GKVHVF+A +R H      + ++AE ++   R     G+ P     
Sbjct: 945  GLRENTGCSWIEVRGKVHVFIADNRNHPE----WNRIAEFLDHVARRMREEGHDPKKKYS 1000

Query: 491  LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
            L    D    EAL  HS KLA+ FG++   P G+ +R+ KN ++C  CHE+ K+IS++  
Sbjct: 1001 LMGANDAVHDEALCGHSSKLAVTFGVLH-LPEGRPIRVTKNSKVCSHCHEAAKFISKMCN 1059

Query: 551  REIVVRDVNRYHRFLNGSCTC 571
            REI++RD +R+H F  G C+C
Sbjct: 1060 REIILRDSSRFHHFEGGRCSC 1080



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 166/361 (45%), Gaps = 20/361 (5%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPS--PNIVSWTALISAHSNSPLSLNIFLSMLRH-PTLSF 95
           L+  Y K   L  +  +F+ +P    ++  WT+L+SA++ +       +S+ R       
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAG-DFQEGVSLFRQMQCCGV 194

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
            P+   ++ + K  ASL  +   G  +H L  KL L +     +AL+  YSR    ++A 
Sbjct: 195 SPDAHAVSCVLKCIASLG-SITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAM 253

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           +VFD +  RD + + + I G+  N     ++ +F+ M S     +   V   L A AEL 
Sbjct: 254 QVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELG 313

Query: 216 AMEQCRVIHGHAVVSGLDRNV---------IVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
                +V+HG+++ SGL  ++          +G+ L+  Y K G +  ARRVFD   S  
Sbjct: 314 FELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKG 373

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           N   WN +M GYA+  +    L LF  +   G  PDE++   +L   C   L+   +  +
Sbjct: 374 NVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLK--CITCLSCARDGLV 431

Query: 327 ERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
               +  KL  G +   C  LIS   ++  +++A  +   MP + D   W +++S    +
Sbjct: 432 AHGYL-VKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQ-DTISWNSVISGCTSN 489

Query: 385 G 385
           G
Sbjct: 490 G 490



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 142/280 (50%), Gaps = 3/280 (1%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTL 93
           ++ N LI+ Y+KSN++  ++ +F+ +P  + +SW ++IS  +++ L+       +R    
Sbjct: 446 AVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQ 505

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
               +  TL S+   CA  SH +  G  +H  S+K  L  +    +AL+  YS      +
Sbjct: 506 GHELDSTTLLSVLPACAR-SHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHS 564

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
             ++F  + +++VV + AMI  + +         +  +M    +   ++ V+  L   A 
Sbjct: 565 TNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAG 624

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
             +++Q + +HG+A+ +G+++ + V   L++ Y     + +AR VFD +++  + I+WN 
Sbjct: 625 DESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFD-HVTNKDIISWNT 683

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           ++ GY++    +    LF  + ++ F P+  +   +L A+
Sbjct: 684 LIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAV 722



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 161/350 (46%), Gaps = 28/350 (8%)

Query: 16  TDPRIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           T+  ++H    K    +  ++ N LI  YS+   +  ++++F+ + + + +SW + IS +
Sbjct: 215 TEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGY 274

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
            ++     ++++F  M    T     +  T+ S+   CA L    L G  +H  S+K  L
Sbjct: 275 FSNGWHDRAVDLFSKMWSEGT---EISSVTVLSVLPACAELGFE-LVGKVVHGYSMKSGL 330

Query: 132 H----------DKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNS 180
                      D+   GS LV  Y +     +A++VFD +  + +V  +  ++ G+A+ +
Sbjct: 331 LWDLESVQSGIDEAL-GSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAA 389

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              +SL +F  M    +    + +S  L+    L+      V HG+ V  G      V  
Sbjct: 390 EFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCN 449

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            LI  Y K+ ++ +A  VFD  +   ++I+WN++++G    G  S  +ELF  + M+G  
Sbjct: 450 ALISFYAKSNMIDNAVLVFDR-MPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHE 508

Query: 301 PDEYSFLAVLTALCNAGLAGESEKW-IERMKVRYKLEPGLEHYTCLISAM 349
            D  + L+VL A         S  W + R+   Y ++ GL   T L +A+
Sbjct: 509 LDSTTLLSVLPA------CARSHYWFVGRVVHGYSVKTGLIGETSLANAL 552



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 14/205 (6%)

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI---VGTGLIDGYGKAGIVS 253
           VG   YC    ++   E  ++E  R    HA+V      +I   +G  L+  Y K G + 
Sbjct: 92  VGVRSYC--AVVQLCGEERSLEAAR--RAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLG 147

Query: 254 DARRVFDENLSVLNSI-AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            AR VFDE    +  +  W ++M+ YA+ GD    + LF  ++  G +PD ++   VL  
Sbjct: 148 GARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKC 207

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
           + + G   E E  I  +  +  L         LI+   R G +EDA ++  +M    DA 
Sbjct: 208 IASLGSITEGEV-IHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSM-HARDAI 265

Query: 373 VWRALLS--FS-AIHGKA-DMASKM 393
            W + +S  FS   H +A D+ SKM
Sbjct: 266 SWNSTISGYFSNGWHDRAVDLFSKM 290


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 265/469 (56%), Gaps = 34/469 (7%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           S+L+  Y +   P++A+KVFD I  ++ V + A++ G+A N    +++ +F  M    + 
Sbjct: 50  SSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSMPERGLF 109

Query: 199 STMYCVSGALRA--------------------------------AAELAAMEQCRVIHGH 226
           +    +SG ++A                                AAELAA+   R +HG 
Sbjct: 110 AWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLATVVGGAAELAALVLGRQLHGF 169

Query: 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQST 286
           A+  G   ++IVG  L+D Y K   +  AR VF   + V + ++W  ++ G AQ G    
Sbjct: 170 AITLGFLSSMIVGNALVDMYSKCSDIHSAREVFG-GIIVRDVVSWTTILVGEAQHGRVEE 228

Query: 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
           VL L+  + + G  P+E +F+ ++ A  +AGL  +  +  + MK  Y ++PGL+HYTC +
Sbjct: 229 VLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHYTCYL 288

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406
             + R+G L +AE +   MP+EPD A W ALLS    H    M  ++   L+++ P D S
Sbjct: 289 DLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLELRPKDPS 348

Query: 407 AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
            Y++++NV +   +WD VA+VRK+M +  +RKE G SWIE   +  +F AG+   +  E+
Sbjct: 349 TYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPGYSWIEAGRESRMFHAGEVPLDIGEE 408

Query: 467 IYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTL 526
           I   L EL+ E  + GYVP    ++H++ + EK + L+ HSE+LA+AFG++  +P G  +
Sbjct: 409 ITRFLEELVSEMRKRGYVPDTSSVMHDLEENEKEQHLFLHSERLAVAFGILK-SPPGSVI 467

Query: 527 RIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           R+VKNLR+C DCH   K+IS + +R+I+VRD +R+H F +G+C+C + W
Sbjct: 468 RVVKNLRVCGDCHTVMKFISEIAQRKIIVRDASRFHHFEDGNCSCSEFW 516



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 144/315 (45%), Gaps = 21/315 (6%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHP 91
           ++  L++ Y+ +     ++ LF  +P   + +WTALIS      N+  ++ +F+ M R  
Sbjct: 79  VWTALVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDG 138

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
               + +   LA++    A L+ A + G  LH  ++ L        G+ALV  YS+    
Sbjct: 139 VR--IDDAFVLATVVGGAAELA-ALVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDI 195

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
            +A++VF  I  RDVV +  ++VG AQ+ R+ + L+++  M  + +        G + A 
Sbjct: 196 HSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYAC 255

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGL------IDGYGKAGIVSDARRVFDENLSV 265
           +    +++     G  +   + R   +  GL      +D   ++G +S+A  +       
Sbjct: 256 SHAGLVQK-----GRQLFDSMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYE 310

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTAL-CNAGLAGESE 323
            +  +W A+++   +  D    L +  +LLE+R   P  Y  L+ + A+ C      +  
Sbjct: 311 PDEASWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVR 370

Query: 324 KWIERMKVRYKLEPG 338
           K +  M++R   EPG
Sbjct: 371 KIMAEMEIRK--EPG 383



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
           R +H H V S    + +V + LID Y K G+  DAR+VFD ++ V N + W A+++GYA 
Sbjct: 31  RQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFD-SIGVKNGVVWTALVSGYAS 89

Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
            G     ++LF  +  RG     +++ A+++    AG
Sbjct: 90  NGCTGEAIDLFRSMPERGL----FAWTALISGFVKAG 122


>gi|449517497|ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 188/564 (33%), Positives = 315/564 (55%), Gaps = 15/564 (2%)

Query: 21  VHARALKSSQADRSI-YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS-- 77
            H+ ALK    + ++  N+LI  Y +   ++ + +LF+ +P+PN+VSWT+L++ + ++  
Sbjct: 46  THSIALKLGFLNNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQ 105

Query: 78  -PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F  MLR P +   PN  T A+  K C+ LS+    G   H+            
Sbjct: 106 PSTALFLFGEMLRSPVV---PNDFTFATAIKACSILSN-LRHGEMFHAHVEIFGYGGNIV 161

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-S 195
             S+L+  Y +      A+ VF+ +  +++V + +MI  +AQN+   ++L VF +  S S
Sbjct: 162 VCSSLIDMYGKCNDVVKARGVFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLS 221

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                 Y ++  + A A L  +   +V+HG A+  G D + +V + L+D Y K G +  +
Sbjct: 222 SEHPNPYMLASVISACASLGRLVSGKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYS 281

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VF+  +S  + I + +M+   A+ G     L+LF  +  +G  P+  + + VL A  +
Sbjct: 282 DKVFNR-ISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACSH 340

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD--AAV 373
           +GL  E   ++  M  +Y + P  +HYTC++  + R G L+ A  +A +M   PD  A +
Sbjct: 341 SGLPNEGLYYLTSMYEKYGIMPETKHYTCVVDMLARVGELDKAFDLAKSMDVAPDDKALL 400

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALLS S  HG+ D+A++  ++L++ N     AYV ++NV +  G  ++  ++R  MK 
Sbjct: 401 WGALLSASRCHGRVDIAAEACQQLVNSNRQVAGAYVTLSNVYASAGDMEKAHKLRVEMKR 460

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMH-ERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
             V KE G SWIE+K   ++F AG+     R +++   L EL ++ +  GYV     ++ 
Sbjct: 461 TGVHKEPGCSWIEIKDSSYIFYAGEITSCARGDEVLCLLRELDQKMKDRGYVRGRKGLVF 520

Query: 493 -NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            ++ +  + E +W HSE+LAL FGL+S  P+G T+RI+KNLR+C DCHE+FK IS ++ER
Sbjct: 521 VDIEEEAEEEKVWLHSERLALGFGLIS-IPKGLTIRIMKNLRMCSDCHEAFKLISEIMER 579

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           E VVRD+NR+H F NG CTC   W
Sbjct: 580 EFVVRDINRFHHFKNGCCTCNGFW 603



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 13/246 (5%)

Query: 79  LSLNIFLSMLRHPTLS------FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           L  N++ ++ R P LS      FL     L+   + C  L    +  +S HS++LKL   
Sbjct: 2   LKRNLYFALTR-PYLSRENERPFLQTIENLSRHLRNCNDL----ISSISTHSIALKLGFL 56

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           +     + L++ Y RFRS   A ++FDE+   +VV + +++ G+  N +   +L +F +M
Sbjct: 57  NNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEM 116

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             S V    +  + A++A + L+ +    + H H  + G   N++V + LID YGK   V
Sbjct: 117 LRSPVVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDV 176

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLT 311
             AR VF+ ++S  N ++W +M+A YAQ       L++F     +    P+ Y   +V++
Sbjct: 177 VKARGVFN-SMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVIS 235

Query: 312 ALCNAG 317
           A  + G
Sbjct: 236 ACASLG 241


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 185/565 (32%), Positives = 299/565 (52%), Gaps = 18/565 (3%)

Query: 21  VHARALKSSQADRSIYNNLIT-------NYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           +HA  +++S     I N+ I+         S S  + YS ++F+ I  P+   +  +I A
Sbjct: 87  IHAHIIRTSL----IQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNVMIRA 142

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           +S S      F            PN  + + + K+C  +S + + GL +H+  L+     
Sbjct: 143 YSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRIS-SLMGGLQIHARILRDGHQS 201

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + L+  YS     + A KVFDEI + D V +  +I     N R  D+L +F  M+
Sbjct: 202 DNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQ 261

Query: 194 SSDVG---STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           S+  G     + C+   L+A A L A+E    +H +    G D  + +   LI  Y + G
Sbjct: 262 STADGFEPDDVTCLL-LLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCG 320

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A  +F + +   N ++W+AM++G+A  G     +E F  ++  G +PD+ +   VL
Sbjct: 321 RLEKAYSIF-KRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVL 379

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  + GL  +   + +RM   + +EP + HY C++  +GRAG L+ A ++ M+M  +PD
Sbjct: 380 SACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPD 439

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
           + +WR LL    IH  A +  ++   LI++   +   YV++ N+ S VG WD+V ++RK 
Sbjct: 440 STLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKF 499

Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
           MK++ ++   G S IE+KGKVH F+  D +H RT++IY  L E+ ++ +  GYV      
Sbjct: 500 MKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSE 559

Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
           LHN+G  EK   L YHSEKLA+AFG+++  P G T+R+ KNLRIC DCH   K +S    
Sbjct: 560 LHNLGAEEKGNRLSYHSEKLAIAFGVLA-TPPGTTIRVAKNLRICVDCHNFAKVLSGAYN 618

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
           RE+V+RD  R+H F  G C+C   W
Sbjct: 619 REVVIRDRTRFHHFREGQCSCNGYW 643


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 169/516 (32%), Positives = 293/516 (56%), Gaps = 8/516 (1%)

Query: 49  LSYSLRLFNHIPSP-NIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL--PNQRTLASL 105
           +SY+ ++F+ I  P N+  W  LI  ++    S++ F S+ R   +S L  P+  T   L
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAF-SLYREMRVSGLVEPDTHTYPFL 127

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K   +++   L G ++HS+ ++       +  ++L+H Y+      +A KVFD++ E+D
Sbjct: 128 IKAVTTMADVRL-GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD 186

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           +V + ++I GFA+N +  ++L+++ +M S  +    + +   L A A++ A+   + +H 
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 246

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
           + +  GL RN+     L+D Y + G V +A+ +FDE +   NS++W +++ G A  G   
Sbjct: 247 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK-NSVSWTSLIVGLAVNGFGK 305

Query: 286 TVLELFHLLE-MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
             +ELF  +E   G  P E +F+ +L A  + G+  E  ++  RM+  YK+EP +EH+ C
Sbjct: 306 EAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC 365

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  + RAG+++ A     +MP +P+  +WR LL    +HG +D+A     +++ + P  
Sbjct: 366 MVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNH 425

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
              YV+++N+ +   RW +V ++RK M    V+K  G S +EV  +VH FL GD+ H ++
Sbjct: 426 SGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQS 485

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
           + IY KL E+       GYVP    +  +V + EK  A+ YHSEK+A+AF L+S  P   
Sbjct: 486 DAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLIS-TPERS 544

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNR 560
            + +VKNLR+C DCH + K +S+V  REIVVRD +R
Sbjct: 545 PITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 86/165 (52%), Gaps = 7/165 (4%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSNSP-LSLNIFLSMLRHP 91
           + N+L+  Y+    ++ + ++F+ +P  ++V+W ++I+  A +  P  +L ++  M    
Sbjct: 158 VQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM---N 214

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
           +    P+  T+ SL   CA +  A   G  +H   +K+ L       + L+  Y+R    
Sbjct: 215 SKGIKPDGFTIVSLLSACAKIG-ALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRV 273

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           + AK +FDE+ +++ V + ++IVG A N    +++ +F  M S++
Sbjct: 274 EEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTE 318


>gi|413950787|gb|AFW83436.1| hypothetical protein ZEAMMB73_311793 [Zea mays]
          Length = 594

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 191/562 (33%), Positives = 297/562 (52%), Gaps = 17/562 (3%)

Query: 22  HARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI-VSWTALISAHSNSPLS 80
           H  A  SS A   + ++L+T Y++  L   SLR F  +P+P +  +W++LIS+ + + L+
Sbjct: 42  HVPATASSHA--LLAHHLLTFYARCALPDLSLRAFLDLPAPPLPAAWSSLISSFAQNGLA 99

Query: 81  LNIFLSMLRHPTLSFLPNQRTL---ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
              F +  R          R++   A       +LS       +LH L+ K       F 
Sbjct: 100 AAAFDTFRRMLAAGVPATDRSIPLAAKAVAAAETLSRPPFSPHALHGLAAKTPFAGDVFV 159

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           GSA+V  Y++     +A+++FD++ ER+VV + A+I G+A       ++ +F       V
Sbjct: 160 GSAIVDMYAKCGHLADARRLFDDMPERNVVSWSALICGYADAGMHPAAMGIFRLALEEAV 219

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
               Y VS  +R  A     E    +H  A  + LD +  V + L+  Y K G+V  A R
Sbjct: 220 PVNDYTVSSIIRVCAAATLFELGAQVHARATKTALDASPFVSSSLVSVYSKCGLVECAYR 279

Query: 258 VFDE----NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           VF+E    NL +     WNA++   AQ G  +   E F  ++  GF P+  +FL +LTA 
Sbjct: 280 VFNEAPEKNLGI-----WNAVLIASAQHGHTAAAFERFMEMQKAGFQPNHITFLCLLTAC 334

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
             AGL  E +++   MK  Y +EP  EHY  ++  +GR G +++A  +  +MP EP  +V
Sbjct: 335 SYAGLVDEGKRYFSIMK-DYGIEPQAEHYASMVDLLGRVGLIKEALDLIESMPMEPPESV 393

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL    I   AD A+   KRL +       A++++++  +  GR  + A  RK M+D
Sbjct: 394 WGALLMSCRIFKDADTAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHIDAALARKAMRD 453

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
             VRKE G SW+E  G+VH F +  R H+R+E+IY  L  + E+ E  GYV     ++ +
Sbjct: 454 AGVRKETGLSWLEAAGEVHTFASNCRRHQRSEEIYKVLENVGEKMEAAGYVADTSAVVKD 513

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V   EKR  + YHSE+LA+  GL+   P G  +R++KNLR+C DCH + KY+++   R +
Sbjct: 514 VDGDEKRATVRYHSERLAIGLGLLI-VPHGVPIRVMKNLRVCDDCHNAIKYLTKCTGRVV 572

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           V+RD  R+HRF  G C+CGD W
Sbjct: 573 VLRDNRRFHRFEGGVCSCGDFW 594


>gi|449450898|ref|XP_004143199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 188/564 (33%), Positives = 315/564 (55%), Gaps = 15/564 (2%)

Query: 21  VHARALKSSQADRSI-YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS-- 77
            H+ ALK    + ++  N+LI  Y +   ++ + +LF+ +P+PN+VSWT+L++ + ++  
Sbjct: 46  THSIALKLGFLNNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQ 105

Query: 78  -PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              +L +F  MLR P +   PN  T A+  K C+ LS+    G   H+            
Sbjct: 106 PSTALFLFGEMLRSPVV---PNDFTFATAIKACSILSN-LRHGEMFHAHVEIFGYGGNIV 161

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-S 195
             S+L+  Y +      A+ VF+ +  +++V + +MI  +AQN+   ++L VF +  S S
Sbjct: 162 VCSSLIDMYGKCNDVVKARGVFNSMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLS 221

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                 Y ++  + A A L  +   +V+HG A+  G D + +V + L+D Y K G +  +
Sbjct: 222 SEHPNPYMLASVISACASLGRLVSGKVMHGAAISLGCDSSEVVASVLVDMYAKCGSLDYS 281

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VF+  +S  + I + +M+   A+ G     L+LF  +  +G  P+  + + VL A  +
Sbjct: 282 DKVFNR-ISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITLVGVLHACSH 340

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD--AAV 373
           +GL  E   ++  M  +Y + P  +HYTC++  + R G L+ A  +A +M   PD  A +
Sbjct: 341 SGLPNEGLYYLTSMYEKYGIMPETKHYTCVVDMLARVGELDKAFDLAKSMDVAPDDKALL 400

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALLS S  HG+ D+A++  ++L++ N     AYV ++NV +  G  ++  ++R  MK 
Sbjct: 401 WGALLSASRCHGRVDIAAEACQQLVNSNRQVAGAYVTLSNVYASAGDMEKAHKLRVEMKR 460

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMH-ERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
             V KE G SWIE+K   ++F AG+     R +++   L EL ++ +  GYV     ++ 
Sbjct: 461 TGVHKEPGCSWIEIKDSSYIFYAGEITSCPRGDEVLCLLRELDQKMKDRGYVRGRKGLVF 520

Query: 493 -NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
            ++ +  + E +W HSE+LAL FGL+S  P+G T+RI+KNLR+C DCHE+FK IS ++ER
Sbjct: 521 VDIEEEAEEEKVWLHSERLALGFGLIS-IPKGLTIRIMKNLRMCSDCHEAFKLISEIMER 579

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           E VVRD+NR+H F NG CTC   W
Sbjct: 580 EFVVRDINRFHHFKNGCCTCNGFW 603



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 13/246 (5%)

Query: 79  LSLNIFLSMLRHPTLS------FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           L  N++ ++ R P LS      FL     L+   + C  L    +  +S HS++LKL   
Sbjct: 2   LKRNLYFALTR-PYLSRENERPFLQTIENLSRHLRNCNDL----ISSISTHSIALKLGFL 56

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
           +     + L++ Y RFRS   A ++FDE+   +VV + +++ G+  N +   +L +F +M
Sbjct: 57  NNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNGQPSTALFLFGEM 116

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
             S V    +  + A++A + L+ +    + H H  + G   N++V + LID YGK   V
Sbjct: 117 LRSPVVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVCSSLIDMYGKCNDV 176

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLT 311
             AR VF+ ++S  N ++W +M+A YAQ       L++F     +    P+ Y   +V++
Sbjct: 177 VKARGVFN-SMSCKNIVSWTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVIS 235

Query: 312 ALCNAG 317
           A  + G
Sbjct: 236 ACASLG 241


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 316/572 (55%), Gaps = 12/572 (2%)

Query: 12  QNTSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           QN+  D + VH   L++    D  +   LI  YS  + +  + ++F+   +  I  + AL
Sbjct: 83  QNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNAL 142

Query: 71  ISAHSNSPLSLNIFLSMLRHPTLSFLPNQR-TLASLFKTCASLSHAFLF----GLSLHSL 125
             A S +     + L+M R      +P+ R T   + K C + S  F+     G  +H+ 
Sbjct: 143 FRALSLAGHGEEV-LNMYRRMNSIGIPSDRFTYTYVLKACVA-SECFVSLLNKGREIHAH 200

Query: 126 SLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDS 185
            L+          + LV  Y++F    NA  VF+++  ++VV + AMI  +A+N +  ++
Sbjct: 201 ILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEA 260

Query: 186 LSVFADM--RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           L +F ++   + D+      +   L+A A LAA+EQ R+IHG+ +  GLD  + V + L+
Sbjct: 261 LELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALV 320

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
             Y + G +   +RVFD+ +   + ++WN++++ Y   G     + +F  +   G  P  
Sbjct: 321 TMYARCGKLELGQRVFDQ-MDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSP 379

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            SF++VL A  +AGL  E +     M V + + P +EHY C++  +GRA RLE+A +I  
Sbjct: 380 ISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIE 439

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            M  EP   VW +LL    IH   ++A +   RL D+ P +   YV++A++ +  G WD 
Sbjct: 440 NMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDG 499

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
           V  V+K+++ R ++K  GRSWIEVK K++ F++ D ++ R E ++  L +L  E +  GY
Sbjct: 500 VKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGY 559

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           VP    +L+++   EK   +  HSEKLA+AFGL++ + +G+ +RI K+LR+C DCH   K
Sbjct: 560 VPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSS-KGEVIRITKSLRLCEDCHSFTK 618

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +IS+   +EI+VRDVNR+H F +G C+CGD W
Sbjct: 619 FISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/421 (38%), Positives = 240/421 (57%), Gaps = 2/421 (0%)

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
           +K+FDE+ ERDV+ +  M++ +  N +L ++L  F  MR S +      +   L A+A+L
Sbjct: 15  QKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLSASAQL 74

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
             +E  + IH       L   + +GT L+D Y K G +  +R +F EN+   +   WN M
Sbjct: 75  CLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLF-ENMPRRDVSTWNVM 133

Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
           + G A  G     L LF      G  P   +F+ VL A   AGL  E   + + M   Y 
Sbjct: 134 ICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYG 193

Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
           +EP +EHY C++  +GRAG + +A ++  +M   PD  +W  +L    IHG A++  K+G
Sbjct: 194 IEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHGLAELGEKIG 253

Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
            RLI+++P  D  YV +A++ +   +W++V  VR++M +R   K  G S IE +GKVH F
Sbjct: 254 NRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAGWSLIEARGKVHRF 313

Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
           +AG R HE++ +I   L  +       GYVP    +LH++G+ EK  A+  HSE+LA+AF
Sbjct: 314 VAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKENAIKVHSERLAIAF 373

Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
           GL+   P G  +RIVKNLR+C DCHE  K ISRV EREI+VRD +R+H F  G C+C D 
Sbjct: 374 GLLVTGP-GSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFHHFKEGKCSCLDY 432

Query: 575 W 575
           W
Sbjct: 433 W 433



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 138/353 (39%), Gaps = 49/353 (13%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN 98
           ++  +++   +S   +LF+ +P  +++SW  ++ A+ ++           R      +P+
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 99  QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158
           + TL ++    A L      G S+HS+   LSL      G+AL+  Y++    + ++ +F
Sbjct: 61  EATLVTMLSASAQLC-LLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLF 119

Query: 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME 218
           + +  RDV  +  MI G A +    D+L++F    +                        
Sbjct: 120 ENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLN------------------------ 155

Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
                       GL    +   G+++   +AG+V + R  F     + +S      M  Y
Sbjct: 156 -----------EGLHPMNVTFVGVLNACSRAGLVKEGRHYFQ---MMTDSYGIEPEMEHY 201

Query: 279 AQQ----GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
                  G    V E   ++E    +PD   +  VL A    GLA   EK   R+    +
Sbjct: 202 GCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHGLAELGEKIGNRL---IE 258

Query: 335 LEPGLE-HYTCLISAMGRAGRLEDAERI--AMAMPFEPDAAVWRALLSFSAIH 384
           L+P  + HY  L S    + + ED  R+   MA       A W  + +   +H
Sbjct: 259 LDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAGWSLIEARGKVH 311


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 176/560 (31%), Positives = 292/560 (52%), Gaps = 12/560 (2%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H++ +K++ Q +  + + LI  Y+K   L  +  +       ++VSWT +I+ ++    
Sbjct: 512  IHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 571

Query: 80   ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKP 135
               +L  F  ML     S   ++  L +    CA L  A   G  +H+ +       D P
Sbjct: 572  DDKALTTFRQMLDRGIRS---DEVGLTNAVSACAGL-QALKEGQQIHAQACVSGFSSDLP 627

Query: 136  FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            F  +ALV  YSR    + +   F++    D + + A++ GF Q+    ++L VF  M   
Sbjct: 628  F-QNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686

Query: 196  DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
             + +  +    A++AA+E A M+Q + +H     +G D    V   LI  Y K G +SDA
Sbjct: 687  GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746

Query: 256  RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             + F E +S  N ++WNA++  Y++ G  S  L+ F  +      P+  + + VL+A  +
Sbjct: 747  EKQFLE-VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSH 805

Query: 316  AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             GL  +   + E M   Y L P  EHY C++  + RAG L  A+     MP +PDA VWR
Sbjct: 806  IGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWR 865

Query: 376  ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
             LLS   +H   ++       L+++ P D + YV+++N+ +   +WD     R+ MK++ 
Sbjct: 866  TLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKG 925

Query: 436  VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
            V+KE G+SWIEVK  +H F  GD+ H   ++I+    +L +    +GYV     +L+ + 
Sbjct: 926  VKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQ 985

Query: 496  DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
              +K   ++ HSEKLA++FGL+S  P    + ++KNLR+C DCH   K++S+V  REI+V
Sbjct: 986  HEQKDPIIFIHSEKLAISFGLLS-LPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIV 1044

Query: 556  RDVNRYHRFLNGSCTCGDLW 575
            RD  R+H F  G+C+C D W
Sbjct: 1045 RDAYRFHHFEGGACSCKDYW 1064



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 173/398 (43%), Gaps = 7/398 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   K   A +  I   L+  Y+K   +  +L  F      N+V W  ++ A+     
Sbjct: 411 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 470

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
             N F    +      +PNQ T  S+ KTC  L    L G  +HS  +K +     +  S
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLEL-GEQIHSQIIKTNFQLNAYVCS 529

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            L+  Y++    D A  +      +DVV +  MI G+ Q +    +L+ F  M    + S
Sbjct: 530 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               ++ A+ A A L A+++ + IH  A VSG   ++     L+  Y + G + ++   F
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E     ++IAWNA+++G+ Q G+    L +F  +   G   + ++F + + A       
Sbjct: 650 -EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 708

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +  K +  +  +   +   E    LIS   + G + DAE+  + +  + + + W A+++
Sbjct: 709 KQG-KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIIN 766

Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
             + HG    A     ++I  N   +  +V +  VLS 
Sbjct: 767 AYSKHGFGSEALDSFDQMIHSNVRPN--HVTLVGVLSA 802



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 196/453 (43%), Gaps = 41/453 (9%)

Query: 13  NTSTDP-RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           N S D  R +H++ LK    ++  +   L   Y     L  + ++F+ +P   I +W  +
Sbjct: 98  NGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKM 157

Query: 71  ISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           I   ++  L   +F   +R  + +  PN+ T + + + C   S AF     +H+  L   
Sbjct: 158 IKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQG 217

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           L D     + L+  YSR    D A++VFD +R +D   + AMI G ++N    +++ +F 
Sbjct: 218 LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFC 277

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           DM    +  T Y  S  L A  ++ ++E    +HG  +  G   +  V   L+  Y   G
Sbjct: 278 DMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG 337

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A  +F  N+S  +++ +N ++ G +Q G     +ELF  + + G  PD  + LA L
Sbjct: 338 NLISAEHIFS-NMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNT-LASL 395

Query: 311 TALCNAG---------------LAGESEKWIE-------------RMKVRYKLEPGLEH- 341
              C+A                L   S   IE                + Y LE  +E+ 
Sbjct: 396 VVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV 455

Query: 342 --YTCLISAMGRAGRLEDAERIAMAMPFE---PDAAVWRALLSFSAIHGKADMASKMGKR 396
             +  ++ A G    L ++ RI   M  E   P+   + ++L      G  ++  ++  +
Sbjct: 456 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 515

Query: 397 LIDINPYDDSAYV--IVANVLSGVGRWDEVAEV 427
           +I  N +  +AYV  ++ ++ + +G+ D   ++
Sbjct: 516 IIKTN-FQLNAYVCSVLIDMYAKLGKLDTAWDI 547



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 138/312 (44%), Gaps = 24/312 (7%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN +TL  L + C   + +   G  LHS  LKL L         L  FY        A K
Sbjct: 82  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 141

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA-AELA 215
           VFDE+ ER +  +  MI   A  + + +   +F  M S +V       SG L A      
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A +    IH   +  GL  + +V   LID Y + G V  ARRVFD  L + +  +W AM+
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFD-GLRLKDHSSWVAMI 260

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           +G ++   ++  + LF  + + G  P  Y+F +VL+A           K IE +++  +L
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC----------KKIESLEIGEQL 310

Query: 336 EPGL--------EHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
             GL        + Y C  L+S     G L  AE I   M  + DA  +  L++  +  G
Sbjct: 311 H-GLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCG 368

Query: 386 KADMASKMGKRL 397
             + A ++ KR+
Sbjct: 369 YGEKAMELFKRM 380



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 160/385 (41%), Gaps = 15/385 (3%)

Query: 21  VHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HAR L     D ++  N LI  YS++  +  + R+F+ +   +  SW A+IS  S +  
Sbjct: 209 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 268

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++ +F  M     L  +P     +S+   C  +  +   G  LH L LKL      +
Sbjct: 269 EAEAIRLFCDMY---VLGIMPTPYAFSSVLSACKKI-ESLEIGEQLHGLVLKLGFSSDTY 324

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +ALV  Y    +  +A+ +F  + +RD V Y  +I G +Q      ++ +F  M    
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 384

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      ++  + A +    + + + +H +    G   N  +   L++ Y K   +  A 
Sbjct: 385 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 444

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             F E   V N + WN M+  Y    D      +F  +++    P++Y++ ++L      
Sbjct: 445 DYFLET-EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRL 503

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           G     E+ I    ++   +  L  Y C  LI    + G+L+ A  I +      D   W
Sbjct: 504 GDLELGEQ-IHSQIIKTNFQ--LNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSW 559

Query: 375 RALLSFSAIHGKADMASKMGKRLID 399
             +++    +   D A    ++++D
Sbjct: 560 TTMIAGYTQYNFDDKALTTFRQMLD 584



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 162/413 (39%), Gaps = 11/413 (2%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LK    +D  + N L++ Y     L  +  +F+++   + V++  LI+  S    
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 369

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                    R       P+  TLASL   C++    F  G  LH+ + KL          
Sbjct: 370 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFR-GQQLHAYTTKLGFASNNKIEG 428

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL++ Y++    + A   F E    +VV +  M+V +     L +S  +F  M+  ++  
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 488

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             Y     L+    L  +E    IH   + +    N  V + LID Y K G +  A  + 
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
               +  + ++W  M+AGY Q       L  F  +  RG   DE      ++A   AGL 
Sbjct: 549 IR-FAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQ 605

Query: 320 GESE-KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
              E + I            L     L++   R G++E++  +A       D   W AL+
Sbjct: 606 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES-YLAFEQTEAGDNIAWNALV 664

Query: 379 SFSAIHGKADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           S     G  + A     +M +  ID N +   + V  A+  + + +  +V  V
Sbjct: 665 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 717


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 170/442 (38%), Positives = 264/442 (59%), Gaps = 4/442 (0%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            C +++V  YSR R   +A++VF +   +D+V + AM+ G+AQN+  + +L VF  M + 
Sbjct: 213 ICWTSIVVAYSRSRDMGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTAL 272

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            +G     ++GA+ A A+L A+++   +   A ++G   NV+VG+GL+D Y K G++ +A
Sbjct: 273 GIGIDEVSLTGAISACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEA 332

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALC 314
            +VFD  +   N   +++M+ G A  G     + LF  +  R   AP+  +F+ VLTA  
Sbjct: 333 CKVFD-GMQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFIGVLTACS 391

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           +AG+  +   +  +MK +Y + P  +HYTC++  +GRAG +++A  +  +M  EP   VW
Sbjct: 392 HAGMVTDGRYYFAQMKDKYGILPSADHYTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVW 451

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
            ALL    IHGK ++A    + L  + P     YV+++N L+  G+WDEV++VRKVM+ R
Sbjct: 452 GALLGACRIHGKTEVAKVAAEHLFKLEPEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSR 511

Query: 435 RVRKEGGRSWIEVK-GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R++K    SW E + G VH F AGD  H RT +I   L EL+ + +  GYVP+   ++++
Sbjct: 512 RLKKVPAVSWFEGRDGLVHQFFAGDNSHPRTREIKKALLELVAKLKHAGYVPILSSIVYD 571

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + EK   L  HSEKLAL FGL++   R  T+RIVKNLRIC DCH   + +SR    EI
Sbjct: 572 VSNEEKERLLMGHSEKLALLFGLLTLGSRC-TIRIVKNLRICDDCHLFIRLVSRFEPVEI 630

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           +VRD  R+H F +G C+CG  W
Sbjct: 631 IVRDNMRFHHFKDGECSCGGFW 652



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 128/308 (41%), Gaps = 20/308 (6%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D   + +++  YS+S  +  +  +F   P  ++V+WTA+++ ++ + + +       R  
Sbjct: 211 DVICWTSIVVAYSRSRDMGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMT 270

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
            L    ++ +L      CA L  A      +  ++           GS LV  Y++    
Sbjct: 271 ALGIGIDEVSLTGAISACAQLG-AVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLI 329

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGALRA 210
           D A KVFD ++E++V  Y +M+VG A + R  +++++F DM R +DV        G L A
Sbjct: 330 DEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFIGVLTA 389

Query: 211 AAELAAMEQCRVIHG-----HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
            +    +   R         + ++   D      T ++D  G+AG+V +A  +       
Sbjct: 390 CSHAGMVTDGRYYFAQMKDKYGILPSADHY----TCMVDLLGRAGLVDEALDLVRSMTVE 445

Query: 266 LNSIAWNAMMAGYAQQGDQSTV-LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
            +   W A++      G      +   HL ++       Y  L+    L  AG      K
Sbjct: 446 PHGGVWGALLGACRIHGKTEVAKVAAEHLFKLEPEGIGNYVLLS--NTLAAAG------K 497

Query: 325 WIERMKVR 332
           W E  KVR
Sbjct: 498 WDEVSKVR 505


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 178/545 (32%), Positives = 290/545 (53%), Gaps = 11/545 (2%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPT 92
           Y  LIT Y+    ++ + +LF+ I   ++VSW A+IS +    N   +L ++  M++   
Sbjct: 134 YTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMK--- 190

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
            +  P++ T+ ++   CA  S +   G  LHS              + L+  YS+    +
Sbjct: 191 TNVKPDESTMVTVVSACAQ-SGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVE 249

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
            A  +F  + ++DV+ +  +I G    +   ++L +F +M  S        +   L A A
Sbjct: 250 TACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACA 309

Query: 213 ELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            L A++  R IH +    + G+     + T LID Y K G +  A++VFD  L+   S +
Sbjct: 310 HLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLS-S 368

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WNAM+ G+A  G  +   +LF  +   G  PD+ +F+ +L+A  ++G+          M 
Sbjct: 369 WNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMS 428

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             YK+ P LEHY C+I  +G  G  ++A+ +   MP EPD  +W +LL    +H   ++ 
Sbjct: 429 QDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELG 488

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
               + LI I P +  +YV+++N+ +  GRWD+VA++R ++ D+ ++K  G S IE+   
Sbjct: 489 ESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSV 548

Query: 451 VHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKL 510
           VH F+ GD+ H R  +IY  L E+    E  G+VP   E+L  + +  K  AL +HSEKL
Sbjct: 549 VHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKL 608

Query: 511 ALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCT 570
           A+AFGL+S  P G  L IVKNLR+CR+CHE+ K IS++ +REI+ RD  R H   +G  +
Sbjct: 609 AIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWS 667

Query: 571 CGDLW 575
           C D W
Sbjct: 668 CHDYW 672



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 190/417 (45%), Gaps = 56/417 (13%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASL 105
           LSY++ +F  I  PN++ W  +   H   S+S  +L +++ M+   +L  LPN  +   L
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMI---SLGLLPNSYSFPFL 71

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K+CA  S A + G  +H   LKL      +  ++L+  Y++    ++A KVFD    R 
Sbjct: 72  LKSCAK-SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRH 130

Query: 166 VVCYGAMIVGFA-----QNSR-LVDSLSV-------------------------FADMRS 194
           VV Y A+I G+A      N+R L D +SV                         + DM  
Sbjct: 131 VVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMK 190

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
           ++V      +   + A A+  ++E  R +H      G   N+ +   LID Y K G V  
Sbjct: 191 TNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A  +F + L+  + I+WN ++ G+         L LF  +   G +P++ + L+VL A  
Sbjct: 251 ACGLF-QGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACA 309

Query: 315 NAGLAGESEKWI-----ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           + G A +  +WI     +R+K        L   T LI    + G +E A+++  +M    
Sbjct: 310 HLG-AIDIGRWIHVYINKRLKGVTNASSLL---TSLIDMYAKCGDIEAAKQVFDSM-LTR 364

Query: 370 DAAVWRALLSFSAIHGKA----DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
             + W A++   A+HGKA    D+ SKM K  ID  P DD  +V + +  S  G  D
Sbjct: 365 SLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID--P-DDITFVGLLSACSHSGMLD 418


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 185/549 (33%), Positives = 297/549 (54%), Gaps = 19/549 (3%)

Query: 35  IYNNLITNYSKSNLLSYSLRLF--NHIPSPNIVSWTALISAH-SNSPLSLNIFLSMLRHP 91
           +   LI+ Y K +L+  + ++F  N       V + AL+S + SNS  S  + L   R  
Sbjct: 86  VQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLL--FRQM 143

Query: 92  TLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
               +P N  TL  L   C S  +  L G SLH  +LK          +  +  Y +  S
Sbjct: 144 NEEGVPVNSVTLLGLIPACVSPINLEL-GSSLHCSTLKYGFDSDVSVVNCFITMYMKCGS 202

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            + A+K+FDE+  + ++ + AM+ G+AQN    + L ++ +M  + V      + G L +
Sbjct: 203 VNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSS 262

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A L A      +      SG   N  +   LI+ Y + G ++ A+ VFD  +     ++
Sbjct: 263 CANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFD-GMPERTLVS 321

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W A++ GY   G     ++LF  +   G  PD  +F+ VL+A  +AGL  +  ++ + MK
Sbjct: 322 WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMK 381

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             Y+LEPG EHY+C++  +GRAGRL++A+ +  +MP +PD AVW ALL    IH   ++A
Sbjct: 382 RNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELA 441

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
               +R+I++ P +   YV+++N+ S       V  +R +MK+++++K+ G S++E+KG+
Sbjct: 442 ELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGR 501

Query: 451 VHVFLAGDRMHERTEDIYTKLAEL----MEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           VH F+ GDR H ++++IY  L EL    M+E  +    P  D    +  D   R  +  H
Sbjct: 502 VHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGK----PEKDNREESNKDGFTRVGV--H 555

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+AFGL++    G  + I+KNLRIC DCH  FK +S++V R++ VRD  R+H F N
Sbjct: 556 SEKLAVAFGLLN-TTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRN 614

Query: 567 GSCTCGDLW 575
           GSC+C D W
Sbjct: 615 GSCSCKDYW 623



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 180/367 (49%), Gaps = 15/367 (4%)

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +L+++  MLRH      PN  T     K+CA+LS   L G   H    K+    +PF  +
Sbjct: 33  ALSLYPQMLRHGDR---PNAFTFPFALKSCAALSLPIL-GSQFHGQITKVGCVFEPFVQT 88

Query: 140 ALVHFYSRFRSPDNAKKVFDE-IRERDV-VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            L+  Y +    DNA+KVF+E    R + VCY A++ G+  NS+  +++ +F  M    V
Sbjct: 89  GLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGV 148

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 + G + A      +E    +H   +  G D +V V    I  Y K G V+ A++
Sbjct: 149 PVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQK 208

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FDE + V   I+WNAM++GYAQ G  + VLEL+  ++M G  PD  + + VL++  N G
Sbjct: 209 LFDE-MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLG 267

Query: 318 LAGESEKWIERMKVR-YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
                 +   +++   +   P L +   LI+   R G L  A+ +   MP E     W A
Sbjct: 268 AQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDGMP-ERTLVSWTA 324

Query: 377 LLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           ++    +HG  ++A ++ K +I   I P D +A+V V +  S  G  D+  E  K+MK R
Sbjct: 325 IIGGYGMHGHGEIAVQLFKEMIRSGIEP-DGTAFVCVLSACSHAGLTDQGLEYFKMMK-R 382

Query: 435 RVRKEGG 441
             + E G
Sbjct: 383 NYQLEPG 389



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 27/270 (10%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LK    +D S+ N  IT Y K   ++Y+ +LF+ +P   ++SW A++S ++ + L
Sbjct: 174 LHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGL 233

Query: 80  SLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS---LHDKP 135
           + N+ L + R+  ++ + P+  TL  +  +CA+L    +     H +  K+        P
Sbjct: 234 ATNV-LELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG----HEVEFKIQASGFTSNP 288

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  +AL++ Y+R  +   A+ VFD + ER +V + A+I G+  +     ++ +F +M  S
Sbjct: 289 FLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRS 348

Query: 196 DV---GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGY 246
            +   G+   CV   L A +     +Q     G      + RN  +  G      ++D  
Sbjct: 349 GIEPDGTAFVCV---LSACSHAGLTDQ-----GLEYFKMMKRNYQLEPGPEHYSCMVDLL 400

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           G+AG + +A+ + +      +   W A++ 
Sbjct: 401 GRAGRLKEAQTLIESMPIKPDGAVWGALLG 430



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 3/213 (1%)

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
            A+  + + +LS++  M         +    AL++ A L+        HG     G    
Sbjct: 24  LAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFE 83

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENL-SVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
             V TGLI  Y K  +V +AR+VF+EN  S   ++ +NA+++GY      S  + LF  +
Sbjct: 84  PFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQM 143

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
              G   +  + L ++ A C + +  E    +    ++Y  +  +    C I+   + G 
Sbjct: 144 NEEGVPVNSVTLLGLIPA-CVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGS 202

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
           +  A+++   MP +     W A++S  A +G A
Sbjct: 203 VNYAQKLFDEMPVK-GLISWNAMVSGYAQNGLA 234


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 196/593 (33%), Positives = 313/593 (52%), Gaps = 45/593 (7%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HSNS 77
           VH  A+K S   D  I N+L+  Y     LS + RLF  I   ++VSW ++ISA    N 
Sbjct: 148 VHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNC 207

Query: 78  PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKP 135
           P  +L +FL M R    + +PN  T+  +   CA       FG  + S   +  +  D  
Sbjct: 208 PEDALELFLKMERE---NVMPNSVTMVGVLSACAK-KLDLEFGRWVCSYIERKGIKVDLT 263

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA------------------ 177
            C +A++  Y++  S D+A+K+FDE+ ERDV  +  M+ G+A                  
Sbjct: 264 LC-NAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVK 322

Query: 178 -------------QNSRLVDSLSVFADMRSSDVGST-MYCVSGALRAAAELAAMEQCRVI 223
                        QN +  ++L++F +++ S +       +   L A A+L A++    I
Sbjct: 323 EIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWI 382

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H +    G+  N  + + L+D Y K G +  A  VF  ++   +   W+AM+AG    G 
Sbjct: 383 HVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVF-YSVEERDVYVWSAMIAGLGMHGR 441

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               ++LF  ++     P+  +F  VL A  +AGL  E   +   M+  Y + P ++HY 
Sbjct: 442 GKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYA 501

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
           C++  +GRAG LE+A  +   M   P A+VW ALL   ++H   ++      +L+ + P 
Sbjct: 502 CMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPR 561

Query: 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER 463
           +  A V+++N+ +  GRW++V+E+RK+M+D  ++KE G S IE  G VH FL GD  H  
Sbjct: 562 NHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPL 621

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE-KREALWYHSEKLALAFGLVSGAPR 522
           + +IY+KL E+  + + +GY P    +L  + + + K +AL  HSEKLA+AFGLV+ AP 
Sbjct: 622 SSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAP- 680

Query: 523 GKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + +R+VKNLRIC DCH   K +SRV +R+I++RD  R+H F +G C+C D W
Sbjct: 681 SQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 193/428 (45%), Gaps = 55/428 (12%)

Query: 13  NTSTDPRIVHARALKSS------QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVS 66
           ++S   + VHAR L++        A +    + ++++S    L Y+  LF+ IP PN+ +
Sbjct: 36  SSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFST---LDYARNLFDQIPQPNLYT 92

Query: 67  WTALISAHSNS--PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           W  LI A+++S  P  S  IFL +L       LPN+ T   + K  + L  A   G ++H
Sbjct: 93  WNTLIRAYASSSDPFQSFVIFLDLLD--KCEDLPNKFTFPFVIKAASELK-ASRVGTAVH 149

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
            +++KLS     +  ++LV FY        A+++F  I  +DVV + +MI  FAQ +   
Sbjct: 150 GMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPE 209

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           D+L +F  M   +V      + G L A A+   +E  R +  +    G+  ++ +   ++
Sbjct: 210 DALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAML 269

Query: 244 DGYGKAGIVSDARRVFDE------------------------------NLSVLNSIAWNA 273
           D Y K G V DA+++FDE                               + V    AWN 
Sbjct: 270 DMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNV 329

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           +++ Y Q G     L +F+ L++   A PDE + ++ L+A    G A +   WI     R
Sbjct: 330 LISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLG-AIDLGGWIHVYIKR 388

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
             +       + L+    + G LE A  +  ++  E D  VW A+++   +HG+      
Sbjct: 389 EGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE-ERDVYVWSAMIAGLGMHGR------ 441

Query: 393 MGKRLIDI 400
            GK  ID+
Sbjct: 442 -GKAAIDL 448


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 182/564 (32%), Positives = 296/564 (52%), Gaps = 15/564 (2%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA--HSNS 77
           VH   +K+   +D  + + ++  Y+K   LS ++ LF  +  PN+V + A+I+      +
Sbjct: 239 VHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEA 298

Query: 78  PLSLNIFLSML----RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
            +  ++    L       +    P + T +S+ + C +L+    FG  +H   LK     
Sbjct: 299 AVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRAC-NLAGDIEFGKQIHGQVLKHCFQG 357

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
             F GSAL+  Y      ++  + F  + ++DVV + AMI G  QN     +L++F ++ 
Sbjct: 358 DDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELL 417

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
            + +    + +S  + A A LA       I   A  SG  R   +G   I  Y ++G V 
Sbjct: 418 GAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVH 477

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A R F E +   + ++W+A+++ +AQ G     L  F+ +      P+E +FL VLTA 
Sbjct: 478 AAVRRFQE-MESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTAC 536

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            + GL  E  K+ E MK  Y L P ++H TC++  +GRAGRL DAE       F  +  +
Sbjct: 537 SHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVI 596

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           WR+LL+   IH   +    +  R++++ P   ++YV + N+    G     +++R VMK+
Sbjct: 597 WRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSLASKIRDVMKE 656

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R V+KE G SWIE++  VH F+AGD+ H  +  IY+KLAE++ + ++L      D     
Sbjct: 657 RGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLAEMLSKIDKL---TATDASSTK 713

Query: 494 VGDREKREALW--YHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
             D  + E  W  +HSEKLA+A GL+   P+   +R++KNLR+CRDCH + K IS+  +R
Sbjct: 714 SDDTIRNEQSWMNWHSEKLAVALGLIH-LPQSAPIRVMKNLRVCRDCHLTMKLISKSEKR 772

Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
           EIV+RD  R+H F +GSC+C D W
Sbjct: 773 EIVLRDAIRFHHFRDGSCSCADYW 796



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 174/358 (48%), Gaps = 27/358 (7%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTL 93
           N L+  Y +  L  ++ RL + +P  N VS+  LI A+S +     SL  F    R   +
Sbjct: 53  NTLLAAYCR--LGGHARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLETFARARRSAGV 110

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
               ++ T A+    C S +     G ++H+LS+   +    F  ++LV  Y+R      
Sbjct: 111 R--ADRFTYAAALAAC-SRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQ 167

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR--AA 211
           A++VFD   ERD V + A++ G+ +     D L VFA MR S +G   + +   ++  A 
Sbjct: 168 ARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAG 227

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           ++   M+    +HG  V +G D +V + + ++  Y K G +S+A  +F   L   N + +
Sbjct: 228 SDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDP-NVVVF 286

Query: 272 NAMMAGYAQQGDQSTV--------LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
           NAM+AG  +  D++ V        L L+  ++ RG  P E++F +V+ A CN  LAG+ E
Sbjct: 287 NAMIAGLCR--DEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRA-CN--LAGDIE 341

Query: 324 --KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
             K I    +++  +      + LI     +G +ED  R   ++P + D   W A++S
Sbjct: 342 FGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVP-KQDVVTWTAMIS 398


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 178/514 (34%), Positives = 283/514 (55%), Gaps = 13/514 (2%)

Query: 70  LISAHSNSPL------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           LI  H  SP       +   F  MLR    +  PN+ T   L K+CA+L  +   GL  H
Sbjct: 103 LIRTHVTSPFPSARRRAAAFFPLMLR---AAVAPNKFTFPFLLKSCAALPGSPDVGLQAH 159

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSP--DNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           + +LK       +  + L+H YS F +    +A+ VF+ +     V + AMI G+ +   
Sbjct: 160 AAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGL 219

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
             D++ +F  M+ S V      V G L AAA+L A+E  R +       G+ ++V +   
Sbjct: 220 SSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNA 279

Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
           LID   K G V  A  VF E +     ++W +++   A +G     + +F  ++  G  P
Sbjct: 280 LIDTLAKCGDVDGAVAVF-EGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLP 338

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           D+ +F+ VLTA  +AG+  E   + + MK  Y +EP +EHY C++   GRAG +E     
Sbjct: 339 DDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEF 398

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
             AMP +P+  +WR L++    HG+ ++   + + L++  P  ++ YV+++NV +   RW
Sbjct: 399 VRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRW 458

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
            E +E+R+ M  R ++K  G S +E+ G+VH F+AGD  H + ++IY  + E+  E  R+
Sbjct: 459 KEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRI 518

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           G++    E+L ++ + +K  AL +HSEKLA+AF L+   P G  +R+VKNLR+C DCH +
Sbjct: 519 GHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLR-TPPGTQVRVVKNLRVCSDCHAA 577

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            K IS+V  REIVVRD +R+HRF +GSC+C D W
Sbjct: 578 IKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611


>gi|302764608|ref|XP_002965725.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
 gi|300166539|gb|EFJ33145.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
          Length = 502

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 181/502 (36%), Positives = 275/502 (54%), Gaps = 14/502 (2%)

Query: 83  IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142
           ++ SM  H      P+  T++    +C+SL  +F  G  +H  + +          +ALV
Sbjct: 6   LYDSMQSH---GLFPSDFTISVALSSCSSLK-SFERGARIHRWADEHGYGSNLLVQNALV 61

Query: 143 HFYSRFRSPDNAKKVFDEIRERD---VVCYGAMIVGFAQNSRLVDSLSVFADMRSSD-VG 198
           +FY++      A K+F E+ ER    VV + AMI  +A + R  ++L +F  MR    V 
Sbjct: 62  NFYAKCSKIPEAMKLFGEMSERTSRTVVSWSAMIGAYALHGRGQEALLLFHRMRKDGRVE 121

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSG--LDRNVIVGTGLIDGYGKAGIVSDAR 256
                 +G   A   +  +EQ R IH  A+ SG     + I+   L++ + + G + +AR
Sbjct: 122 PNAMTFTGVFNACGVVEDLEQGREIHALAMASGELKSSSPILENALLNMFVRFGSLEEAR 181

Query: 257 RVFD---ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +VFD      +  NS++W AM+A  AQ G     LELF  + + G   D  +F+ VL A 
Sbjct: 182 KVFDAMDHPDAFSNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRAC 241

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            +AGL  ES ++   M   Y + P   HY   +  +GRAGRL+DAE +  +MPF P+   
Sbjct: 242 SHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVT 301

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W+ LL+   IH +A+ A+K+ + L  + P D  AY ++ NV +   R+ +   VRK M D
Sbjct: 302 WKTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTD 361

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R ++K   +S+IEVK KVH F+AGDR H   ++I  +L +L       GYVP   ++LH 
Sbjct: 362 RGLKKVPRKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHA 421

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V + EK + +  HSEKLA+AFGL++  P G  L IVKNLR+C DCH + K I++++ R I
Sbjct: 422 VNEEEKEQLIGLHSEKLAIAFGLIA-TPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRI 480

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           VVRD +R+H   +G C+C D W
Sbjct: 481 VVRDTHRFHHLEDGQCSCKDYW 502



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 137/320 (42%), Gaps = 35/320 (10%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHI---PSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           + N L+  Y+K + +  +++LF  +    S  +VSW+A+I A   H     +L +F  M 
Sbjct: 56  VQNALVNFYAKCSKIPEAMKLFGEMSERTSRTVVSWSAMIGAYALHGRGQEALLLFHRMR 115

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS--LHDKPFCGSALVHFYS 146
           +   +   PN  T   +F  C  +      G  +H+L++         P   +AL++ + 
Sbjct: 116 KDGRVE--PNAMTFTGVFNACGVVED-LEQGREIHALAMASGELKSSSPILENALLNMFV 172

Query: 147 RFRSPDNAKKVFDEIRERDV----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV---GS 199
           RF S + A+KVFD +   D     V + AMI   AQ+ +  ++L +F +M    +    +
Sbjct: 173 RFGSLEEARKVFDAMDHPDAFSNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADAT 232

Query: 200 TMYCVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
           T  CV   LRA +    + E     H       +          +D  G+AG + DA  +
Sbjct: 233 TFICV---LRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEEL 289

Query: 259 FDENLSVLNSIAWNAMMAG---YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
                    ++ W  ++     ++Q    + V EL   L     AP++     +L  +  
Sbjct: 290 IHSMPFHPETVTWKTLLNACRIHSQAERATKVAELLAKL-----APEDSMAYTLLGNVYA 344

Query: 316 AGLAGESEKWIERMKVRYKL 335
           A     +E++ ++M+VR  +
Sbjct: 345 A-----TERYGDQMRVRKSM 359


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 176/560 (31%), Positives = 292/560 (52%), Gaps = 12/560 (2%)

Query: 21   VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
            +H++ +K++ Q +  + + LI  Y+K   L  +  +       ++VSWT +I+ ++    
Sbjct: 472  IHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 531

Query: 80   ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKP 135
               +L  F  ML     S   ++  L +    CA L  A   G  +H+ +       D P
Sbjct: 532  DDKALTTFRQMLDRGIRS---DEVGLTNAVSACAGL-QALKEGQQIHAQACVSGFSSDLP 587

Query: 136  FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
            F  +ALV  YSR    + +   F++    D + + A++ GF Q+    ++L VF  M   
Sbjct: 588  F-QNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 646

Query: 196  DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
             + +  +    A++AA+E A M+Q + +H     +G D    V   LI  Y K G +SDA
Sbjct: 647  GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 706

Query: 256  RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             + F E +S  N ++WNA++  Y++ G  S  L+ F  +      P+  + + VL+A  +
Sbjct: 707  EKQFLE-VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSH 765

Query: 316  AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
             GL  +   + E M   Y L P  EHY C++  + RAG L  A+     MP +PDA VWR
Sbjct: 766  IGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWR 825

Query: 376  ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
             LLS   +H   ++       L+++ P D + YV+++N+ +   +WD     R+ MK++ 
Sbjct: 826  TLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKG 885

Query: 436  VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
            V+KE G+SWIEVK  +H F  GD+ H   ++I+    +L +    +GYV     +L+ + 
Sbjct: 886  VKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQ 945

Query: 496  DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
              +K   ++ HSEKLA++FGL+S  P    + ++KNLR+C DCH   K++S+V  REI+V
Sbjct: 946  HEQKDPIIFIHSEKLAISFGLLS-LPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIV 1004

Query: 556  RDVNRYHRFLNGSCTCGDLW 575
            RD  R+H F  G+C+C D W
Sbjct: 1005 RDAYRFHHFEGGACSCKDYW 1024



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 161/366 (43%), Gaps = 5/366 (1%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HA   K   A +  I   L+  Y+K   +  +L  F      N+V W  ++ A+     
Sbjct: 371 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 430

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
             N F    +      +PNQ T  S+ KTC  L    L G  +HS  +K +     +  S
Sbjct: 431 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLEL-GEQIHSQIIKTNFQLNAYVCS 489

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
            L+  Y++    D A  +      +DVV +  MI G+ Q +    +L+ F  M    + S
Sbjct: 490 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 549

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
               ++ A+ A A L A+++ + IH  A VSG   ++     L+  Y + G + ++   F
Sbjct: 550 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 609

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
            E     ++IAWNA+++G+ Q G+    L +F  +   G   + ++F + + A       
Sbjct: 610 -EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 668

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            +  K +  +  +   +   E    LIS   + G + DAE+  + +  + + + W A+++
Sbjct: 669 KQG-KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIIN 726

Query: 380 FSAIHG 385
             + HG
Sbjct: 727 AYSKHG 732



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 196/453 (43%), Gaps = 41/453 (9%)

Query: 13  NTSTDP-RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
           N S D  R +H++ LK    ++  +   L   Y     L  + ++F+ +P   I +W  +
Sbjct: 58  NGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKM 117

Query: 71  ISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           I   ++  L   +F   +R  + +  PN+ T + + + C   S AF     +H+  L   
Sbjct: 118 IKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQG 177

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           L D     + L+  YSR    D A++VFD +R +D   + AMI G ++N    +++ +F 
Sbjct: 178 LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFC 237

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
           DM    +  T Y  S  L A  ++ ++E    +HG  +  G   +  V   L+  Y   G
Sbjct: 238 DMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG 297

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            +  A  +F  N+S  +++ +N ++ G +Q G     +ELF  + + G  PD  + LA L
Sbjct: 298 NLISAEHIFS-NMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNT-LASL 355

Query: 311 TALCNAG---------------LAGESEKWIE-------------RMKVRYKLEPGLEH- 341
              C+A                L   S   IE                + Y LE  +E+ 
Sbjct: 356 VVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV 415

Query: 342 --YTCLISAMGRAGRLEDAERIAMAMPFE---PDAAVWRALLSFSAIHGKADMASKMGKR 396
             +  ++ A G    L ++ RI   M  E   P+   + ++L      G  ++  ++  +
Sbjct: 416 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 475

Query: 397 LIDINPYDDSAYV--IVANVLSGVGRWDEVAEV 427
           +I  N +  +AYV  ++ ++ + +G+ D   ++
Sbjct: 476 IIKTN-FQLNAYVCSVLIDMYAKLGKLDTAWDI 507



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 138/312 (44%), Gaps = 24/312 (7%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
           PN +TL  L + C   + +   G  LHS  LKL L         L  FY        A K
Sbjct: 42  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 101

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA-AELA 215
           VFDE+ ER +  +  MI   A  + + +   +F  M S +V       SG L A      
Sbjct: 102 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 161

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A +    IH   +  GL  + +V   LID Y + G V  ARRVFD  L + +  +W AM+
Sbjct: 162 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFD-GLRLKDHSSWVAMI 220

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           +G ++   ++  + LF  + + G  P  Y+F +VL+A           K IE +++  +L
Sbjct: 221 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC----------KKIESLEIGEQL 270

Query: 336 EPGL--------EHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
             GL        + Y C  L+S     G L  AE I   M  + DA  +  L++  +  G
Sbjct: 271 H-GLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCG 328

Query: 386 KADMASKMGKRL 397
             + A ++ KR+
Sbjct: 329 YGEKAMELFKRM 340



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 160/385 (41%), Gaps = 15/385 (3%)

Query: 21  VHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HAR L     D ++  N LI  YS++  +  + R+F+ +   +  SW A+IS  S +  
Sbjct: 169 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 228

Query: 80  ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              ++ +F  M     L  +P     +S+   C  +  +   G  LH L LKL      +
Sbjct: 229 EAEAIRLFCDMY---VLGIMPTPYAFSSVLSACKKI-ESLEIGEQLHGLVLKLGFSSDTY 284

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             +ALV  Y    +  +A+ +F  + +RD V Y  +I G +Q      ++ +F  M    
Sbjct: 285 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 344

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +      ++  + A +    + + + +H +    G   N  +   L++ Y K   +  A 
Sbjct: 345 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 404

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
             F E   V N + WN M+  Y    D      +F  +++    P++Y++ ++L      
Sbjct: 405 DYFLET-EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRL 463

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           G     E+ I    ++   +  L  Y C  LI    + G+L+ A  I +      D   W
Sbjct: 464 GDLELGEQ-IHSQIIKTNFQ--LNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSW 519

Query: 375 RALLSFSAIHGKADMASKMGKRLID 399
             +++    +   D A    ++++D
Sbjct: 520 TTMIAGYTQYNFDDKALTTFRQMLD 544



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 162/413 (39%), Gaps = 11/413 (2%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LK    +D  + N L++ Y     L  +  +F+++   + V++  LI+  S    
Sbjct: 270 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 329

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
                    R       P+  TLASL   C++    F  G  LH+ + KL          
Sbjct: 330 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFR-GQQLHAYTTKLGFASNNKIEG 388

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
           AL++ Y++    + A   F E    +VV +  M+V +     L +S  +F  M+  ++  
Sbjct: 389 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 448

Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
             Y     L+    L  +E    IH   + +    N  V + LID Y K G +  A  + 
Sbjct: 449 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 508

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
               +  + ++W  M+AGY Q       L  F  +  RG   DE      ++A   AGL 
Sbjct: 509 IR-FAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQ 565

Query: 320 GESE-KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
              E + I            L     L++   R G++E++  +A       D   W AL+
Sbjct: 566 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES-YLAFEQTEAGDNIAWNALV 624

Query: 379 SFSAIHGKADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           S     G  + A     +M +  ID N +   + V  A+  + + +  +V  V
Sbjct: 625 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 677


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 185/549 (33%), Positives = 297/549 (54%), Gaps = 19/549 (3%)

Query: 35  IYNNLITNYSKSNLLSYSLRLF--NHIPSPNIVSWTALISAH-SNSPLSLNIFLSMLRHP 91
           +   LI+ Y K +L+  + ++F  N       V + AL+S + SNS  S  + L   R  
Sbjct: 77  VQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLL--FRQM 134

Query: 92  TLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
               +P N  TL  L   C S  +  L G SLH  +LK          +  +  Y +  S
Sbjct: 135 NEEGVPVNSVTLLGLIPACVSPINLEL-GSSLHCSTLKYGFDSDVSVVNCFITMYMKCGS 193

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            + A+K+FDE+  + ++ + AM+ G+AQN    + L ++ +M  + V      + G L +
Sbjct: 194 VNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSS 253

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A L A      +      SG   N  +   LI+ Y + G ++ A+ VFD  +     ++
Sbjct: 254 CANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFD-GMPERTLVS 312

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           W A++ GY   G     ++LF  +   G  PD  +F+ VL+A  +AGL  +  ++ + MK
Sbjct: 313 WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMK 372

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
             Y+LEPG EHY+C++  +GRAGRL++A+ +  +MP +PD AVW ALL    IH   ++A
Sbjct: 373 RNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELA 432

Query: 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGK 450
               +R+I++ P +   YV+++N+ S       V  +R +MK+++++K+ G S++E+KG+
Sbjct: 433 ELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGR 492

Query: 451 VHVFLAGDRMHERTEDIYTKLAEL----MEECERLGYVPVWDEMLHNVGDREKREALWYH 506
           VH F+ GDR H ++++IY  L EL    M+E  +    P  D    +  D   R  +  H
Sbjct: 493 VHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGK----PEKDNREESNKDGFTRVGV--H 546

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SEKLA+AFGL++    G  + I+KNLRIC DCH  FK +S++V R++ VRD  R+H F N
Sbjct: 547 SEKLAVAFGLLN-TTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRN 605

Query: 567 GSCTCGDLW 575
           GSC+C D W
Sbjct: 606 GSCSCKDYW 614



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 180/367 (49%), Gaps = 15/367 (4%)

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           +L+++  MLRH      PN  T     K+CA+LS   L G   H    K+    +PF  +
Sbjct: 24  ALSLYPQMLRHGDR---PNAFTFPFALKSCAALSLPIL-GSQFHGQITKVGCVFEPFVQT 79

Query: 140 ALVHFYSRFRSPDNAKKVFDE-IRERDV-VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            L+  Y +    DNA+KVF+E    R + VCY A++ G+  NS+  D++ +F  M    V
Sbjct: 80  GLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGV 139

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 + G + A      +E    +H   +  G D +V V    I  Y K G V+ A++
Sbjct: 140 PVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQK 199

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FDE + V   I+WNAM++GYAQ G  + VLEL+  ++M G  PD  + + VL++  N G
Sbjct: 200 LFDE-MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLG 258

Query: 318 LAGESEKWIERMKVR-YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
                 +   +M+   +   P L +   LI+   R G L  A+ +   MP E     W A
Sbjct: 259 AQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKAQAVFDGMP-ERTLVSWTA 315

Query: 377 LLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
           ++    +HG  ++A ++ K +I   I P D +A+V V +  S  G  D+  E  K+MK R
Sbjct: 316 IIGGYGMHGHGEIAVQLFKEMIRSGIEP-DGTAFVCVLSACSHAGLTDQGLEYFKMMK-R 373

Query: 435 RVRKEGG 441
             + E G
Sbjct: 374 NYQLEPG 380



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 27/270 (10%)

Query: 21  VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H   LK    +D S+ N  IT Y K   ++Y+ +LF+ +P   ++SW A++S ++ + L
Sbjct: 165 LHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGL 224

Query: 80  SLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS---LHDKP 135
           + N+ L + R+  ++ + P+  TL  +  +CA+L    +     H +  K+        P
Sbjct: 225 ATNV-LELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVG----HEVEFKMQASGFTSNP 279

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  +AL++ Y+R  +   A+ VFD + ER +V + A+I G+  +     ++ +F +M  S
Sbjct: 280 FLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRS 339

Query: 196 DV---GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGY 246
            +   G+   CV   L A +     +Q     G      + RN  +  G      ++D  
Sbjct: 340 GIEPDGTAFVCV---LSACSHAGLTDQ-----GLEYFKMMKRNYQLEPGPEHYSCMVDLL 391

Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           G+AG + +A+ + +      +   W A++ 
Sbjct: 392 GRAGRLKEAQTLIESMPIKPDGAVWGALLG 421



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 4/227 (1%)

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
            A+  + + +LS++  M         +    AL++ A L+        HG     G    
Sbjct: 15  LAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFE 74

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENL-SVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
             V TGLI  Y K  +V +AR+VF+EN  S   ++ +NA+++GY      S  + LF  +
Sbjct: 75  PFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQM 134

Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
              G   +  + L ++ A C + +  E    +    ++Y  +  +    C I+   + G 
Sbjct: 135 NEEGVPVNSVTLLGLIPA-CVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGS 193

Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
           +  A+++   MP +     W A++S  A +G A    ++  R +D+N
Sbjct: 194 VNYAQKLFDEMPVK-GLISWNAMVSGYAQNGLATNVLEL-YRNMDMN 238


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 263/437 (60%), Gaps = 2/437 (0%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           + ++H Y+     D A++VF+ + +RD   + +M+  + +  R  D+L ++ +MR++ V 
Sbjct: 141 NTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVN 200

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                +   L A +++ A+     +H     +G++ +V +GT LID Y K G + ++ RV
Sbjct: 201 PDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRV 260

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318
           F  ++ V + + W++M+ G A  G     L LF  +   G  P+E +F+ VL +  + GL
Sbjct: 261 F-HSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGL 319

Query: 319 AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
             + +K+   M V + + P ++HY C++  +GR+G +E+A+++   MPFEPDA +WRALL
Sbjct: 320 VSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALL 379

Query: 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438
               I+   ++A +   +L  ++P+ D  YV+++N+ +    W+ VAE+R+ ++  R+++
Sbjct: 380 GACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQR 439

Query: 439 EGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDRE 498
             GRS IE +  +H F++GDR H R+++IY  L E+M+   + GY P+   +L ++ ++ 
Sbjct: 440 IPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQS 499

Query: 499 KREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDV 558
           K  AL  HSEKLA+AFGL++  P G TLRI KNLR C DCH + K I+ + ER++++RD 
Sbjct: 500 KERALAEHSEKLAVAFGLLT-TPAGSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDR 558

Query: 559 NRYHRFLNGSCTCGDLW 575
           NR+H F  G C+C D W
Sbjct: 559 NRFHHFSEGRCSCKDYW 575



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 118/265 (44%), Gaps = 4/265 (1%)

Query: 16  TDPRIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           T   +  AR +     +R +  +N +I  Y+ +  +  +  +FN +   +  SW++++SA
Sbjct: 118 TRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSA 177

Query: 74  HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           ++    S +              P+  T+ S+   C+ +  A   G  +H       +  
Sbjct: 178 YTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMG-ALAVGAEVHQFVESNGVEL 236

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
               G+AL+  Y++    +N+ +VF  +  +DV+ + +MI+G A +    D+LS+F+ M 
Sbjct: 237 DVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRML 296

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQC-RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           S  +        G L +   L  +    +     +VV G+   V     ++D  G++G +
Sbjct: 297 SEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHI 356

Query: 253 SDARRVFDENLSVLNSIAWNAMMAG 277
            +A+++  +     +++ W A++  
Sbjct: 357 EEAKQLIRDMPFEPDAVIWRALLGA 381



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 40/199 (20%)

Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
           R+V +   ++  Y   G V++ARRVFD  +   + ++WN M+ GYA  G+     E+F+ 
Sbjct: 104 RDVFLCNVMLAAYVTRGEVAEARRVFD-GMRERDMVSWNTMIHGYAVNGEVDLAREVFNG 162

Query: 294 L-----------------------------EMRG--FAPDEYSFLAVLTALCNAG---LA 319
           +                             EMR     PD  + ++VL+A  + G   + 
Sbjct: 163 MDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVG 222

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
            E  +++E   V   ++ G    T LI    + G +E++ R+  +MP + D   W +++ 
Sbjct: 223 AEVHQFVESNGVELDVKLG----TALIDMYAKCGDIENSVRVFHSMPVK-DVLTWSSMII 277

Query: 380 FSAIHGKADMASKMGKRLI 398
             A HG    A  +  R++
Sbjct: 278 GLANHGFGHDALSLFSRML 296


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 197/598 (32%), Positives = 311/598 (52%), Gaps = 45/598 (7%)

Query: 19  RIVHARALKSSQADRSI-YNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALI--- 71
           R +HA+ +K++  +     + LI   S S +   L Y+  +F+ I  PN   + ALI   
Sbjct: 23  RQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGF 82

Query: 72  SAHSNSPLSLNIFLSMLRHPTLSFLPN-QRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
           S  SN   SL ++  ML    L++    + ++ S+ K C  L  AF  G  +H   LK  
Sbjct: 83  SDTSNPVESLILYARML--SCLNYSSGVEFSIPSVLKACGKLL-AFDEGRQVHGQVLKTH 139

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           L   PF G+++V  Y  F   + A++VFD +  RDVV + +MI G+ +   +  +  VF 
Sbjct: 140 LWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFE 199

Query: 191 DMRSSDVGSTMYCVSG-------------------------------ALRAAAELAAMEQ 219
            M   DV +    +S                                 L A A+L  +E+
Sbjct: 200 TMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEE 259

Query: 220 CRVIHGHAVVSGLDRNV-IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
            + +H +  ++ ++ +   +G+ LID Y K G + +A  VF       N   WN+M++G 
Sbjct: 260 GKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGL 319

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A  G     L++F  +E     P+E +FL +L+   + GL  E + + E M  +YK+ P 
Sbjct: 320 AIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPR 379

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           ++HY C+I   GRAGRLEDA  +   MPFE D   W+A+LS S  HG  ++      R I
Sbjct: 380 IQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAI 439

Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
           ++ P D S+YV+++N+ +  GRWD+VA++R +M+ R V+K  G S + V GKVH FL G 
Sbjct: 440 ELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGK 499

Query: 459 RMHER-TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
            +    +  +  K+AE++   +  GY P   ++L ++ D  K   L  HSEK+A+AFGL+
Sbjct: 500 ELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLI 559

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
               +   + IVKNLR+C DCH   K +S+V  R+I++RD NR+H F NG C+C + W
Sbjct: 560 H-INKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 165/439 (37%), Positives = 259/439 (58%), Gaps = 4/439 (0%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +++V  YSR R   +A++VF     +D+V + AM+ G+AQN+  V +L  F  M  + + 
Sbjct: 228 TSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMP 287

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                ++GA+ A A+L A+++   +   A  +GL RNV+VG+GL+D Y K G++ +AR+V
Sbjct: 288 IDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKV 347

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAG 317
           F E +   N   +++M+ G A  G  + V+ LF+ +  R    P+  +F+ VLTA  +AG
Sbjct: 348 F-EGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAG 406

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           +  E   +  +MK RY + P  +HY C++  + R+G + +A  +  +M  EP   VW AL
Sbjct: 407 MVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGAL 466

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    IHG  ++A    + L  + P     YV+++N L+  G WDEV+++RK+M+ R ++
Sbjct: 467 LGACRIHGNTEVAKIAAEHLFRLEPEGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLK 526

Query: 438 KEGGRSWIEVK-GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           K+   SW E + G VH F AGD  H    +I  +L EL E+    GYVP+   +++NV +
Sbjct: 527 KDPAVSWFEGRDGFVHQFFAGDNTHPSMHEIKKRLLELREKLNLAGYVPILSSVVYNVSE 586

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK   L  HSEKLAL+FGL++   R  ++RIVKNLRIC DCH   + +S+V   EI+VR
Sbjct: 587 EEKERLLMGHSEKLALSFGLLTLESR-SSIRIVKNLRICEDCHLFIRLVSKVEPIEILVR 645

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F +G C+CG  W
Sbjct: 646 DNMRFHHFRDGECSCGGFW 664



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 132/304 (43%), Gaps = 14/304 (4%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSF 95
           + +++  YS+   +  +  +F   P  ++V+WTA+++ ++ + + +    +  +      
Sbjct: 227 WTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGM 286

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
             ++ +L      CA L  A      +  ++ +  L      GS LV  Y++    D A+
Sbjct: 287 PIDEVSLTGAISACAQLG-AVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEAR 345

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAEL 214
           KVF+ + +++V  Y +MIVG A + R  D +++F DM R +DV        G L A +  
Sbjct: 346 KVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHA 405

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTG-----LIDGYGKAGIVSDARRVFDENLSVLNSI 269
             +++ R    +      DR  I+ +      ++D   ++G+V++A  +        +  
Sbjct: 406 GMVKEGR----YYFAQMKDRYGILPSADHYACMVDLLARSGLVTEALDLVKSMTVEPHGG 461

Query: 270 AWNAMMAGYAQQGDQSTV-LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
            W A++      G+     +   HL  +       Y  L+    L +AG   E  K  + 
Sbjct: 462 VWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGNYVLLS--NTLASAGEWDEVSKLRKL 519

Query: 329 MKVR 332
           M++R
Sbjct: 520 MRIR 523


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 164/439 (37%), Positives = 260/439 (59%), Gaps = 4/439 (0%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +++V  Y+R     +A++VF     +D+V + AM+ G+AQN+  V +L VF  M    + 
Sbjct: 212 TSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMV 271

Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258
                ++GA+ A A+L A+ +   +   A  +G   NV+VG+GL+D Y K G++ +A +V
Sbjct: 272 IDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKV 331

Query: 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAG 317
           F   +   N   +++M+AG A  G  S  + LF  +  R    P+  +F+ VLTA  +AG
Sbjct: 332 F-YGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAG 390

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           + GE   +  +MK +Y + P  +HY C++  +GRAG +++A  +  +M   P   VW AL
Sbjct: 391 MVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGAL 450

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    IHGK+++A  + + L  + P     YV+++N+L+  G+W+EV++VR +M+ +R++
Sbjct: 451 LGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLK 510

Query: 438 KEGGRSWIEVK-GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           K+   S  E + G VH F AGD  H RT +I   L EL+ + +  GYVP+   ++++V D
Sbjct: 511 KDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVND 570

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            EK   L  HSEKLAL+FGL++    G T+RI+KNLRIC DCH   + +SRV   EI+VR
Sbjct: 571 EEKERLLMGHSEKLALSFGLLTLG-SGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVR 629

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D  R+H F NG C+CG  W
Sbjct: 630 DNMRFHHFKNGECSCGGFW 648



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 135/311 (43%), Gaps = 22/311 (7%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLR 89
           + D   + +++  Y++S  +  +  +F   P  ++V+WTA+++ ++ + + +       R
Sbjct: 205 EKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDR 264

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
              L  + ++ +L      CA L  A      +  ++ +    +    GS LV  Y++  
Sbjct: 265 MAELGMVIDEVSLTGAISACAQLG-ALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCG 323

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGAL 208
             D A KVF  ++E++V  Y +MI G A + R  +++++F +M   ++V        G L
Sbjct: 324 LIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVL 383

Query: 209 RAAAELAAMEQCRVIHG-----HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
            A +    + + R         + ++   D        ++D  G+AG+V +A  +     
Sbjct: 384 TACSHAGMVGEGRYYFAQMKDKYGIMPSADHYAC----MVDLLGRAGLVDEALDLVRSMS 439

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELF--HLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
              +   W A++      G +S + ++   HL ++   +   Y  L+    L +AG    
Sbjct: 440 VTPHGGVWGALLGACRIHG-KSEIAKVVAEHLFKLEPESIGNYVLLS--NILASAG---- 492

Query: 322 SEKWIERMKVR 332
             KW E  KVR
Sbjct: 493 --KWEEVSKVR 501


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 188/574 (32%), Positives = 312/574 (54%), Gaps = 32/574 (5%)

Query: 20  IVHARALKSSQ-----ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH 74
           I H R LK          R+I +N ++   + + +S   R+ +H  SP+  ++  L+ + 
Sbjct: 13  IFHIRHLKLESFVWNIIIRAIVHN-VSPPQRHSPISVYFRMRHHCVSPDFHTFPFLLPSF 71

Query: 75  SNSPLSLNIFLSMLRHPTLSFL-----PNQRT-LASLFKTCASLSHAF-LFGLSLHSLSL 127
            N P+ L   L    H  +        P  RT L +++ +C  LS A  +F  S+     
Sbjct: 72  HN-PIHLP--LGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSK--- 125

Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
                D P   +++V+ Y++    ++A+K+FDE+ ER+V+ +  +I G+    +  ++L 
Sbjct: 126 -----DLP-AWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALD 179

Query: 188 VFADMRSSD-----VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
           +F +M+        V    + +S  L A   L A+EQ + +H +    G++ ++++GT L
Sbjct: 180 LFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTAL 239

Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAP 301
           ID Y K G +  A+RVFD   S  +  A++AM+   A  G      ++F  +       P
Sbjct: 240 IDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINP 299

Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
           +  +F+ +L A  + GL  + + + + M   + + P ++HY C++   GR+G +++AE  
Sbjct: 300 NSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESF 359

Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
             +MP EPD  +W +LLS S + G         KRLI+++P +  AYV+++NV +  GRW
Sbjct: 360 IASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRW 419

Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
            EV  +R  M+ + ++K  G S++EV+G VH F+ GD   + +E IY  L E+M+     
Sbjct: 420 IEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREA 479

Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
           GYV    E+L ++ +++K  AL YHSEKLA+AF L+   P G  +RI+KNLRIC DCH  
Sbjct: 480 GYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRP-GTPVRIIKNLRICGDCHLV 538

Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            K IS++  REIVVRD NR+H F +GSC+C D W
Sbjct: 539 MKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 174/544 (31%), Positives = 288/544 (52%), Gaps = 52/544 (9%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSM----LRHP 91
           L+  Y+K   L+ +  + + +   ++V W ++I     H     +L +F  M    +R  
Sbjct: 277 LVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRID 336

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
             ++    ++LAS    C +L      G S+HSL++K          +ALV  Y++  + 
Sbjct: 337 DFTYPSVLKSLAS----CKNLK----IGESVHSLTIKTGFDACKTVSNALVDMYAKQGNL 388

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A  VF++I ++DV+ + +++ G+  N     +L +F DMR++ V    + V+    A 
Sbjct: 389 SCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSAC 448

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           AEL  +E  R +H + + S     +     LI  Y K G + DA RV D ++   N I+W
Sbjct: 449 AELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXD-SMETRNVISW 507

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
            A++ GYAQ G                                   L    + + E M+ 
Sbjct: 508 TAIIVGYAQNG-----------------------------------LVETGQSYFESMEK 532

Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
            Y ++P  + Y C+I  +GRAG++ +AE +   M  EPDA +W++LLS   +HG  ++  
Sbjct: 533 VYGIKPASDRYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGE 592

Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
           + GK LI + P +   YV+++N+ S  GRW++ A +R+ MK   + +E G SWIE+K +V
Sbjct: 593 RAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKSQV 652

Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
           H F++ DR H    +IY+K+ E+M   +  G+VP  +  L ++ +  K  +L YHSEKLA
Sbjct: 653 HTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLA 712

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           +AFGL++ A +G  +RI KNLR+C DCH + KYIS + +R I++RD+N +H F+ G C+C
Sbjct: 713 VAFGLLTVA-KGAPIRIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSC 771

Query: 572 GDLW 575
           GD W
Sbjct: 772 GDFW 775



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 195/425 (45%), Gaps = 21/425 (4%)

Query: 15  STDPRIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
           S + R+  AR L  +    D+  +N +I+ Y+    L  + +LFN  P  N ++W++L+S
Sbjct: 48  SKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSITWSSLVS 107

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
            +  +   +       +  +    P+Q TL S+ + C++LS     G  +H  ++K+ L 
Sbjct: 108 GYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLS-LLHTGKMIHCYAIKIQLE 166

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSVFAD 191
              F  + LV  YS+ +    A+ +F  + +R + V + AM+ G+AQN   + ++  F +
Sbjct: 167 ANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKE 226

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           MR+  + S  +     L A   ++A    R +HG  + SG   NV V + L+D Y K G 
Sbjct: 227 MRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGD 286

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           ++ AR + D  + + + + WN+M+ G    G     L LFH +  R    D++++ +VL 
Sbjct: 287 LASARMILD-TMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLK 345

Query: 312 AL--CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
           +L  C     GES   +  + ++   +        L+    + G L  A  +   +  + 
Sbjct: 346 SLASCKNLKIGES---VHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKI-LDK 401

Query: 370 DAAVWRALLS---FSAIHGKA-DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425
           D   W +L++    +  H KA  +   M    +D++ +      +VA V S       + 
Sbjct: 402 DVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQF------VVACVFSACAELTVIE 455

Query: 426 EVRKV 430
             R+V
Sbjct: 456 FGRQV 460



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 179/410 (43%), Gaps = 10/410 (2%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISAHSN 76
           +++H  A+K   +A+  +   L+  YSK   L  +  LF  +P   N V WTA+++ ++ 
Sbjct: 154 KMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQ 213

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +  SL                N  T  S+   C S+S A+ FG  +H   +        +
Sbjct: 214 NGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSIS-AYAFGRQVHGCIIWSGFGPNVY 272

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             SALV  Y++     +A+ + D +   DVVC+ +MIVG   +  + ++L +F  M + D
Sbjct: 273 VQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRD 332

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           +    +     L++ A    ++    +H   + +G D    V   L+D Y K G +S A 
Sbjct: 333 IRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCAL 392

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF++ L   + I+W +++ GY   G     L+LF  +       D++    V +A C  
Sbjct: 393 DVFNKILDK-DVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSA-CAE 450

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
               E  + +    ++      L     LI+   + G LEDA R+  +M    +   W A
Sbjct: 451 LTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSME-TRNVISWTA 509

Query: 377 LLSFSAIHGKADMAS---KMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           ++   A +G  +      +  +++  I P  D  Y  + ++L   G+ +E
Sbjct: 510 IIVGYAQNGLVETGQSYFESMEKVYGIKPASDR-YACMIDLLGRAGKINE 558


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 180/525 (34%), Positives = 286/525 (54%), Gaps = 13/525 (2%)

Query: 55  LFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           + + +   ++V  TALI  +S       ++  F SML        PN+ T AS+  +C +
Sbjct: 223 VLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQ---PNEYTYASVLISCGN 279

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
           L      G  +H L +K          ++L+  Y R    D++ +VF  I   + V + +
Sbjct: 280 LKD-IGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTS 338

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           +I G  QN R   +L  F  M    +    + +S ALR  + LA  E+ R IHG     G
Sbjct: 339 LISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYG 398

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
            DR+   G+GLID YGK G    AR VFD  LS ++ I+ N M+  YAQ G     L+LF
Sbjct: 399 FDRDKYAGSGLIDLYGKCGCSDMARLVFD-TLSEVDVISLNTMIYSYAQNGFGREALDLF 457

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             +   G  P++ + L+VL A  N+ L  E  +  +  + + K+    +HY C++  +GR
Sbjct: 458 ERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFR-KDKIMLTNDHYACMVDLLGR 516

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411
           AGRLE+AE +   +   PD  +WR LLS   +H K +MA ++ +++++I P D+   +++
Sbjct: 517 AGRLEEAEMLTTEV-INPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILM 575

Query: 412 ANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM-HERTEDIYTK 470
           +N+ +  G+W+ V E++  MKD +++K    SW+E+  + H F+AGD   H  +E I   
Sbjct: 576 SNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILEN 635

Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
           L EL+++ + LGYV     +  ++ +  K  +L  HSEKLA+AF +      G ++RI+K
Sbjct: 636 LEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNV--GGSIRILK 693

Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           NLR+C DCH   K +SRV++REI+ RD  R+H F +GSC+CGD W
Sbjct: 694 NLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGDYW 738



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 177/392 (45%), Gaps = 13/392 (3%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS---AHS 75
           + + A  LKS        + L+    K   + Y+ ++F+ +   +IV+W +LI+    H 
Sbjct: 85  KTIQAHMLKSGFPAEISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHR 144

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DK 134
            S  ++ ++  M+   T + LP++ TL+S+FK  + LS       S H L++ L L    
Sbjct: 145 RSKEAVEMYRLMI---TNNVLPDEYTLSSVFKAFSDLSLEKEAQRS-HGLAVILGLEVSN 200

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            F GSALV  Y +F     AK V D + E+DVV   A+IVG++Q     +++  F  M  
Sbjct: 201 VFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLV 260

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V    Y  +  L +   L  +   ++IHG  V SG +  +   T L+  Y +  +V D
Sbjct: 261 EKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDD 320

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           + RVF + +   N ++W ++++G  Q G +   L  F  +      P+ ++  + L    
Sbjct: 321 SLRVF-KCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCS 379

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           N  +  E  + I  +  +Y  +      + LI   G+ G   D  R+      E D    
Sbjct: 380 NLAMFEEGRQ-IHGIVTKYGFDRDKYAGSGLIDLYGKCG-CSDMARLVFDTLSEVDVISL 437

Query: 375 RALLSFSAIHGKADMASKMGKRLID--INPYD 404
             ++   A +G    A  + +R+I+  + P D
Sbjct: 438 NTMIYSYAQNGFGREALDLFERMINLGLQPND 469


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 179/592 (30%), Positives = 308/592 (52%), Gaps = 35/592 (5%)

Query: 15   STDPRIVHARALKSSQADR--SIYNNLITNYSKSNLLSYSLRLFNHIPS----PNIVSWT 68
            S + ++  AR +  S  +R  S +N++I++Y+    L+ +  LF  + S    P+IV+W 
Sbjct: 821  SKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWN 880

Query: 69   ALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL-FGLSLHSLSL 127
             L+S H        +   + R     F PN  ++ S+ +  + L   FL  G   H   L
Sbjct: 881  CLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISEL--GFLNMGKETHGYVL 938

Query: 128  KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
            +       + G++L+  Y +  S  +A+ VFD ++ R++  + +++ G++      D+L 
Sbjct: 939  RNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALR 998

Query: 188  VFADMRSSDV------------GSTMY------------CVSGALRAAAELAAMEQCRVI 223
            +   M    +            G  M+             ++  LRA A L+ +++ + I
Sbjct: 999  LLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEI 1058

Query: 224  HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
            H  ++ +G   +V V T LID Y K+  + +A +VF   +      +WN M+ G+A  G 
Sbjct: 1059 HCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVF-RRIQNKTLASWNCMIMGFAIFGL 1117

Query: 284  QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
                + +F+ ++  G  PD  +F A+L+A  N+GL GE  K+ + M   Y++ P LEHY 
Sbjct: 1118 GKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYC 1177

Query: 344  CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
            C++  +GRAG L++A  +   MP +PDA +W ALL    IH     A    K L  + P 
Sbjct: 1178 CMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPN 1237

Query: 404  DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER 463
            + + Y+++ N+ S   RW+++  +R++M    VR     SWI++  +VHVF + ++ H  
Sbjct: 1238 NSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPD 1297

Query: 464  TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
               IY +L +L+ E ++LGYVP  + +  N+ + EK++ L  H+EKLA+ +GL+     G
Sbjct: 1298 AGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIK-MKAG 1356

Query: 524  KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + +R++KN RIC DCH + KYIS V  RE+ +RD  R+H F  G C+C D W
Sbjct: 1357 EPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 148/320 (46%), Gaps = 6/320 (1%)

Query: 38  NLITNY-SKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH-PTLSF 95
           NLI++Y    +  S ++  +  +P  N + W + +    +S  SL+I L + +       
Sbjct: 612 NLISSYLGFGDFWSAAMVFYVGLPR-NYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGV 670

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
           + +    +   KTC  +   +L G+ +H   +K       +   AL++FY R    + A 
Sbjct: 671 VFDSEVYSVALKTCTRVMDIWL-GMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKAN 729

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           +VF E+   + + +   I+   Q+ +L   + +F  M+ S + +    +   L+A  ++ 
Sbjct: 730 QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMG 789

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           A+   + IHG+    GLD +V +   LI  Y K G +  ARRVFD ++   N+ +WN+M+
Sbjct: 790 ALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFD-SMENRNTSSWNSMI 848

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
           + YA  G  +    LF+ LE     PD  ++  +L+     G   E    ++RM+     
Sbjct: 849 SSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GF 907

Query: 336 EPGLEHYTCLISAMGRAGRL 355
           +P     T ++ A+   G L
Sbjct: 908 KPNSSSMTSVLQAISELGFL 927



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 3/200 (1%)

Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
           L VF ++    V       S AL+    +  +     IHG  +  G D +V +   L++ 
Sbjct: 659 LEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNF 718

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           YG+   +  A +VF E +    ++ WN  +    Q       +ELF  ++      +  +
Sbjct: 719 YGRCWGLEKANQVFHE-MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETAT 777

Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
            + VL A C    A  + K I     R+ L+  +     LIS   + G+LE A R+  +M
Sbjct: 778 IVRVLQA-CGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 836

Query: 366 PFEPDAAVWRALLSFSAIHG 385
               + + W +++S  A  G
Sbjct: 837 E-NRNTSSWNSMISSYAALG 855


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 179/525 (34%), Positives = 286/525 (54%), Gaps = 13/525 (2%)

Query: 55  LFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           + + +   ++V  TALI  +S       ++  F SML        PN+ T AS+  +C +
Sbjct: 205 VLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQ---PNEYTYASVLISCGN 261

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
           L      G  +H L +K          ++L+  Y R    D++  VF  I+  + V + +
Sbjct: 262 LKD-IGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTS 320

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           +I G  QN R   +L  F  M    V    + +S ALR  + LA  E+ R +HG     G
Sbjct: 321 LISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYG 380

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
            DR+   G+GLI+ YGK G    AR VFD  LS ++ I+ N M+  YAQ G     LELF
Sbjct: 381 FDRDKYAGSGLIELYGKCGCSDMARLVFD-TLSEVDVISLNTMIYSYAQNGFGREALELF 439

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
             +   G  P++ + L+VL A  N+GL  E  +  +  + + K+    +HY C++  +GR
Sbjct: 440 ERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFR-KDKIMLTNDHYACMVDMLGR 498

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411
           AGRLE+AE +   +   PD  +WR LLS   +H K +MA ++ +++++I P D+   +++
Sbjct: 499 AGRLEEAEMLITEVT-NPDLVLWRTLLSACKVHRKVEMAERITRKILEIAPGDEGTLILL 557

Query: 412 ANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM-HERTEDIYTK 470
           +N+ +  G+W  V E++  MK+ +++K    SW+E+  + H F+AGD   H  +E I   
Sbjct: 558 SNLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETHTFMAGDLFSHPNSEQILEN 617

Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
           L EL+++ + LGYV     +  ++ +  K  +L  HSEKLA+AF +      G ++RI+K
Sbjct: 618 LEELIKKAKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNV--GGSIRILK 675

Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           NLR+C DCH   K +SR+++REI+ RD  R+H F +GSC+CGD W
Sbjct: 676 NLRVCVDCHSWIKIVSRIIKREIICRDSKRFHHFRDGSCSCGDYW 720



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 178/390 (45%), Gaps = 13/390 (3%)

Query: 21  VHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS---AHSNS 77
           + A+ LKS        + L+    K   + Y+ +LF+ +P  +IV+W ++I+    H  S
Sbjct: 69  IQAQMLKSGFPVELSGSKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRS 128

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKPF 136
             ++ ++  M+ +   + LP++ TL+S+FK  + LS       S H L++ L L     F
Sbjct: 129 KEAVEMYRLMISN---NVLPDEYTLSSVFKAFSDLSLEKEAQRS-HGLAVILGLEVSNVF 184

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GSALV  Y +F     AK V D + E+DVV   A+IVG++Q     +++  F  M    
Sbjct: 185 VGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEK 244

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    Y  +  L +   L  +   ++IHG  V SG +  +   T L+  Y +  +V D+ 
Sbjct: 245 VQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSL 304

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VF + +   N + W ++++G  Q G + T L  F  +      P+ ++  + L    N 
Sbjct: 305 LVF-KCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNL 363

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
            +  E  + +  +  +Y  +      + LI   G+ G   D  R+      E D      
Sbjct: 364 AMFEEGRQ-VHGIVSKYGFDRDKYAGSGLIELYGKCG-CSDMARLVFDTLSEVDVISLNT 421

Query: 377 LLSFSAIHGKADMASKMGKRLID--INPYD 404
           ++   A +G    A ++ +R+I+  + P D
Sbjct: 422 MIYSYAQNGFGREALELFERMINLGLQPND 451


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 184/568 (32%), Positives = 316/568 (55%), Gaps = 25/568 (4%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R+VH  ++K+   +  S+ N L+  YS  +    + ++F ++   N+VSWTA+I++++ +
Sbjct: 317 RVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRA 376

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL------FGLSLHSLSLKLSL 131
            L  +    + +   L     + T   +F   ++L HAF        G S+H  +++  +
Sbjct: 377 GL-YDKVAGLFQEMGL-----EGTRPDIFAITSAL-HAFAGNELLKHGKSVHGYAIRNGM 429

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
                  +AL+  Y +  + + AK +FD +  +D++ +  +I G+++N+   ++ S+F +
Sbjct: 430 EKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTE 489

Query: 192 M----RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
           M    R + V  TM C+   L AAA L+++E+ R +H +A+  G   +  V   LID Y 
Sbjct: 490 MLLQLRPNAV--TMTCI---LPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYV 544

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G +  ARR+FD  LS  N I+W  M+AGY   G     + LF  + + G APD  SF 
Sbjct: 545 KCGALLLARRLFDR-LSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFS 603

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           A+L A  ++GL  E  ++ + M+  +K+EP L+HYTC++  +   G L++A     +MP 
Sbjct: 604 AILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPI 663

Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
           EPD+++W +LL    IH    +A ++ +R+ ++ P +   YV++AN+ +   RW+ V ++
Sbjct: 664 EPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKL 723

Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
           +  +  R +R+  G SWIE KGKVHVF+A +R H +   I   L E+ +  +  G+ P  
Sbjct: 724 KNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKK 783

Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
              L    +    EAL  HS KLA+AFG+++    G+ +R+ KN R+C  CHE+ K+IS+
Sbjct: 784 KYALMGADNAVHGEALCGHSSKLAVAFGVLN-LSEGRLIRVTKNSRVCSHCHEAAKFISK 842

Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +  REI++RD NR+H F  G C+C   W
Sbjct: 843 MCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 149/303 (49%), Gaps = 16/303 (5%)

Query: 17  DPRIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D  +VH    K     + ++ N L+  Y+KSN    ++ +F+ +P  +++SW ++IS  +
Sbjct: 214 DGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCT 273

Query: 76  NSPL---SLNIFLSM-LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           ++ L   ++ +F+ M L    L    +  TL S+   CA L H    G  +H  S+K   
Sbjct: 274 SNGLYDKAIELFVRMWLEGEEL----DSATLLSVLPACAEL-HLLFLGRVVHGYSVKTGF 328

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
             +    + L+  YS      +  K+F  + +++VV + AMI  + +         +F +
Sbjct: 329 ISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQE 388

Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
           M        ++ ++ AL A A    ++  + +HG+A+ +G+++ + V   L++ Y K G 
Sbjct: 389 MGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGN 448

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH--LLEMRGFAPDEYSFLAV 309
           + +A+ +FD  +S  + I+WN ++ GY++    +    LF   LL++R   P+  +   +
Sbjct: 449 MEEAKLIFDGVVSK-DMISWNTLIGGYSRNNLANEAFSLFTEMLLQLR---PNAVTMTCI 504

Query: 310 LTA 312
           L A
Sbjct: 505 LPA 507



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 2/176 (1%)

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           G  LV  Y +    +NA++VFDE+ +  DV  + A++ G+A+   L + + +F  M    
Sbjct: 132 GQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCG 191

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V    Y +S  L+  A L ++E   V+HG     G      VG  L+  Y K+    DA 
Sbjct: 192 VRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAI 251

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            VFD  +   + I+WN+M++G    G     +ELF  + + G   D  + L+VL A
Sbjct: 252 LVFD-GMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPA 306



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 19/254 (7%)

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           SP  A+K  D +   DV  +   I    ++  L ++L +     S  V    Y     L+
Sbjct: 48  SPRGAEKSPDWVPTSDVNLH---IQRLCRSGDLEEALGLLG---SDGVDDRSY--GAVLQ 99

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNV---IVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
             +E+ ++E  +  H     S L R+    ++G  L+  Y K G + +ARRVFDE   V 
Sbjct: 100 LCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVS 159

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE--- 323
           +   W A+M+GYA+ GD    + LF  +   G  PD Y+   VL  +   G   + E   
Sbjct: 160 DVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVH 219

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
             +E++    +   G      L++   ++ R +DA  +   MP   D   W +++S    
Sbjct: 220 GLLEKLGFGSQCAVG----NALMAFYAKSNRTKDAILVFDGMPHR-DVISWNSMISGCTS 274

Query: 384 HGKADMASKMGKRL 397
           +G  D A ++  R+
Sbjct: 275 NGLYDKAIELFVRM 288


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 282/562 (50%), Gaps = 36/562 (6%)

Query: 47  NLLSYSLRLFNHIPSPNIVSWTALISAHSNS--PLSLNIFLSMLRHPTLSFLPNQRTLAS 104
           N L YS ++ ++  +P + ++ ++I AHS S  P     F S + H      P+  T   
Sbjct: 57  NNLHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTF 116

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           L +T A L  A   G S+H  ++K      P   S L++ Y+     D   +VF  I E 
Sbjct: 117 LVRTSAQLL-AHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEP 175

Query: 165 DVVC-------------------------------YGAMIVGFAQNSRLVDSLSVFADMR 193
           D+VC                               + AMI G+ Q  +  ++LS+F  M+
Sbjct: 176 DLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQ 235

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
              V      +   L A + L A++Q R  H +   + L   + +GT LID Y K G ++
Sbjct: 236 REGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMN 295

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
            A  VF   +   N   W++ + G A  G     LELF L++     P+E +F++VL   
Sbjct: 296 KAMEVF-WGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGC 354

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
              GL  E  K  E M   Y +EP LEHY C++   GRAG L++A     +MP  P    
Sbjct: 355 SVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGA 414

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W ALL+   I+   +M     ++++++   +  AYV+++N+ +    WD V+ VR+ M  
Sbjct: 415 WGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNV 474

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           + VRK+ G S IEV G+VH F  GD+ H R  +I   L E+    +  GYV   + +  +
Sbjct: 475 KGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFD 534

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           + + EK +AL  HSEK+A+AFGL+S +P    +RIVKNLR+C DCH++ K IS+   REI
Sbjct: 535 IEEEEKEDALCMHSEKIAIAFGLISLSP-DVPIRIVKNLRVCWDCHDATKMISKAFNREI 593

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           VVRD NR+H F +G C+C   W
Sbjct: 594 VVRDRNRFHHFRDGECSCKGYW 615



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 119/256 (46%), Gaps = 38/256 (14%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLSMLRHPTLSF 95
           +++  +K   + ++ +LF+ +   + ++W A+IS +     S  +L++F  M R      
Sbjct: 183 MVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQRE---GV 239

Query: 96  LPNQRTLASLFKTCASL--------SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
             N+ ++ S+   C+ L        +HA+   +  + L + L+L      G+AL+  Y++
Sbjct: 240 KVNEVSMVSVLSACSHLGALDQGRWAHAY---IERNKLRMTLTL------GTALIDMYAK 290

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
             + + A +VF  ++E++V  + + I G A N      L +F+ M+   V          
Sbjct: 291 CGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSV 350

Query: 208 LRAAAELAAMEQCRV-IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           LR  + +  +E+ R      + V G++  +     ++D YG+AG +       DE L+ +
Sbjct: 351 LRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHL-------DEALNFI 403

Query: 267 NSI-------AWNAMM 275
           NS+       AW A++
Sbjct: 404 NSMPVRPHVGAWGALL 419


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 183/560 (32%), Positives = 294/560 (52%), Gaps = 46/560 (8%)

Query: 19  RIVHARALKSSQADRSIYN--NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
           R+  AR L      R+++    +++ Y+K+  +  + +LF  +P  N VSWTA++  ++ 
Sbjct: 191 RLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQ 250

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           S      F           +P +  +A     C  +   F     +H             
Sbjct: 251 SGRMKEAF------ELFEAMPVKWIVA-----CNEMILQFGLAGEMH------------- 286

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
                            A+ +F+ ++ERD   + AMI  F +    +++L +FA M+   
Sbjct: 287 ----------------RARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREG 330

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
           V      +   L   A LA+++  R +H   V S  D+++ V + LI  Y K G +  A+
Sbjct: 331 VALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAK 390

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            +F+  L   + + WN+M+ GY+Q G     L +FH +   G  PDE +F+ VL+A   +
Sbjct: 391 GIFNRFL-FKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYS 449

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           G   E  +  E MK  Y++EPG+EHY C++  +GRAGR+++A  +   MP EPDA VW A
Sbjct: 450 GKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGA 509

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL     H K D+A    ++L  + P +   YV+++++ +  GRW +V  +RK + +RRV
Sbjct: 510 LLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKI-NRRV 568

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECER-LGYVPVWDEMLHNVG 495
            K  G SWIEV+ KVH+F  GD      + + T++ E +    R  GY P    +LH+V 
Sbjct: 569 IKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVD 628

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + EK  +L YHSE+LA+A+GL+   P G  +R++KNLR+C DCH + K I++V  REI++
Sbjct: 629 EEEKTHSLGYHSERLAVAYGLLK-VPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIL 687

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD NR+H F +GSC+C D W
Sbjct: 688 RDANRFHHFKDGSCSCKDFW 707



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 162/367 (44%), Gaps = 78/367 (21%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN--IVSWTALISAH-- 74
           R+V AR+L S+        + I+ Y +   +  + ++F++ P P   I SW A++SA+  
Sbjct: 12  RMVQARSLCSN-------TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFE 64

Query: 75  SNSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
           S+ P  +L +F  M +  T+SF                                      
Sbjct: 65  SHKPRDALLLFDQMPQRNTVSF-------------------------------------- 86

Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
                + ++  Y +     +A+KVFD + ER+VV + +M+ G+ Q   + ++  +F +M 
Sbjct: 87  -----NGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMP 141

Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
             +V S    + G L+ +    A +   +I         +++V+V T +I GY + G + 
Sbjct: 142 RRNVVSWTVMIGGLLKESRIDDAKKLFDMIP--------EKDVVVVTNMIGGYCQVGRLD 193

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           +AR +FDE + V N   W  M++GYA+ G      +LF ++  R    +E S+ A+L   
Sbjct: 194 EARELFDE-MKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER----NEVSWTAMLMGY 248

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDA 371
             +G   E+ +  E M V++ +        C  +I   G AG +  A  +   M  E D 
Sbjct: 249 TQSGRMKEAFELFEAMPVKWIV-------ACNEMILQFGLAGEMHRARMMFEGMK-ERDE 300

Query: 372 AVWRALL 378
             W A++
Sbjct: 301 GTWNAMI 307



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 100/469 (21%), Positives = 192/469 (40%), Gaps = 88/469 (18%)

Query: 5   LNQQPQPQNT-------------STDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSY 51
            +  P PQ T             S  PR       +  Q +   +N +I+ Y K+ +++ 
Sbjct: 42  FDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVAD 101

Query: 52  SLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKT 108
           + ++F+ +P  N+VSWT+++  +    +   +  +F  M R   +S+      +  L K 
Sbjct: 102 ARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTV---MIGGLLKE 158

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
                                                SR    D+AKK+FD I E+DVV 
Sbjct: 159 -------------------------------------SRI---DDAKKLFDMIPEKDVVV 178

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR------AAAELAAMEQCRV 222
              MI G+ Q  RL ++  +F +M+  +V +    VSG  +      A      M +   
Sbjct: 179 VTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNE 238

Query: 223 IHGHAVVSGLDRN-----------------VIVGTGLIDGYGKAGIVSDARRVFDENLSV 265
           +   A++ G  ++                 ++    +I  +G AG +  AR +F E +  
Sbjct: 239 VSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMF-EGMKE 297

Query: 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325
            +   WNAM+  + ++G     L LF  ++  G A +  S ++VL+ +C +  + +  + 
Sbjct: 298 RDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLS-VCASLASLDHGRQ 356

Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
           +    VR + +  L   + LI+   + G L  A+ I     F+ D  +W ++++  + HG
Sbjct: 357 VHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFK-DVVMWNSMITGYSQHG 415

Query: 386 KADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
             + A  +   +    + P D+  ++ V +  S  G+  E  E+ + MK
Sbjct: 416 LGEEALNVFHDMCSSGVQP-DEVTFIGVLSACSYSGKVKEGFEIFEAMK 463



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 28/226 (12%)

Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA-WNA 273
           AA  +CR++   ++ S         T  I  YG+ G + +AR+VFD       +IA WNA
Sbjct: 6   AATLRCRMVQARSLCSN--------TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNA 57

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           M++ Y +       L LF  +  R    +  SF  +++     G+  ++ K  + M    
Sbjct: 58  MVSAYFESHKPRDALLLFDQMPQR----NTVSFNGMISGYVKNGMVADARKVFDVMP--- 110

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
             E  +  +T ++    + G +E+AE++   MP   +   W  ++       + D A   
Sbjct: 111 --ERNVVSWTSMVRGYVQEGMVEEAEKLFWEMP-RRNVVSWTVMIGGLLKESRIDDA--- 164

Query: 394 GKRLIDINPYDDSAYVIVANVLSG---VGRWDEVAEVRKVMKDRRV 436
            K+L D+ P  D   V+V N++ G   VGR DE  E+   MK R V
Sbjct: 165 -KKLFDMIPEKD--VVVVTNMIGGYCQVGRLDEARELFDEMKVRNV 207



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 52/251 (20%)

Query: 145 YSRFRSPDNAKKVFDE--IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
           Y R     NA+KVFD   + +R +  + AM+  + ++ +  D+L +F  M          
Sbjct: 29  YGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQ-------- 80

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
                                          RN +   G+I GY K G+V+DAR+VFD  
Sbjct: 81  -------------------------------RNTVSFNGMISGYVKNGMVADARKVFD-V 108

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
           +   N ++W +M+ GY Q+G      +LF  +  R       S+  ++  L       ++
Sbjct: 109 MPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVV----SWTVMIGGLLKESRIDDA 164

Query: 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382
           +K  + +      E  +   T +I    + GRL++A  +   M    +   W  ++S  A
Sbjct: 165 KKLFDMIP-----EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVR-NVFTWTTMVSGYA 218

Query: 383 IHGKADMASKM 393
            +G+ D+A K+
Sbjct: 219 KNGRVDVARKL 229


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 250/439 (56%), Gaps = 2/439 (0%)

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           C +A+V   +     D A+++FD + +RD V + AMI G+    R  ++L +F +MR + 
Sbjct: 270 CVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAG 329

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                  +  AL A A+L A+E+ + +H  A   G+  +V +GT LID Y K G V+ A 
Sbjct: 330 AAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAM 389

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFD ++   N   W + ++G A  G     L LF  +E  G  P+  +F+ VL     A
Sbjct: 390 EVFD-SMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMA 448

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E     + MK  + ++P LEHY C++   GRAGRL+DA      MP EP   VW A
Sbjct: 449 GLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGA 508

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+ S IH   ++      +L+ I   +D+A+V+++N+ +    W  V+ VR +MK + V
Sbjct: 509 LLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGV 568

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S IEV GKVH F  G + H R ++I   LAE+ +     GY+    E+L ++ +
Sbjct: 569 KKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEE 628

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            +K +A+  HSEKLA+AFGLV+  P    +RIVKNLR+C DCH+  K IS+V  REIV+R
Sbjct: 629 EDKEDAISLHSEKLAIAFGLVA-LPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMR 687

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F +G+C+C D W
Sbjct: 688 DRNRFHHFKDGACSCKDYW 706



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 8/205 (3%)

Query: 55  LFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           LF+ +P  + V+W A+I+ + ++  S   L +F  M RH   +    + TL S    CA 
Sbjct: 290 LFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEM-RHAGAAV--GEVTLVSALTACAQ 346

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
           L  A   G  +HS +    +      G+AL+  YS+  +   A +VFD + ER+V  + +
Sbjct: 347 LG-ALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTS 405

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS- 230
            + G A N    D L++F  M S+ V          LR  +    +++ R        + 
Sbjct: 406 AVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNH 465

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDA 255
           G+D  +     ++D YG+AG + DA
Sbjct: 466 GIDPWLEHYGCMVDLYGRAGRLDDA 490


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 172/591 (29%), Positives = 307/591 (51%), Gaps = 37/591 (6%)

Query: 21  VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +H  A K ++  D  +    +  Y+    ++Y+  +F+ +   ++V+W  +I  +    L
Sbjct: 133 LHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGL 192

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS--------HAFLFG----LSLHSLSL 127
               F         + +P++  L ++   C            + FL      +  H L+ 
Sbjct: 193 VDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTA 252

Query: 128 KLSLHDKPFC------------------GSALVHFYSRFRSPDNAKKVFDEIRERDVVCY 169
            ++++    C                   +A+V  YS+    D+A+ +FD+  ++D+VC+
Sbjct: 253 LVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCW 312

Query: 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
             MI  + ++    ++L VF +M  S +   +  +   + A A L  +++ + +H    V
Sbjct: 313 TTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHV 372

Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
           +GL+  + +   LI+ Y K G +   R VF E +   N ++W++M+   +  G+ S  L 
Sbjct: 373 NGLESELSINNALINMYAKCGGLDATRDVF-EKMPRRNVVSWSSMINALSMHGEASDALS 431

Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
           LF  ++     P+E +F+ VL    ++GL  E +K    M   Y + P LEHY C++   
Sbjct: 432 LFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLF 491

Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409
           GRA  L +A  +  +MP   +  +W +L+S   IHG+ ++     KR++++ P  D A V
Sbjct: 492 GRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALV 551

Query: 410 IVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYT 469
           +++N+ +   RW++V  +R+VM+++ V KE G S I+  GK H FL GD+ H+++ +IY 
Sbjct: 552 LMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYA 611

Query: 470 KLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK----- 524
           KL E++ + +  GYVP    +L +V + EK++ + +HSEKLAL FGL++     +     
Sbjct: 612 KLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCG 671

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            +RIVKNLR+C DCH  FK +S+V EREI+VRD  R+H + NG C+C D W
Sbjct: 672 VIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 176/420 (41%), Gaps = 52/420 (12%)

Query: 51  YSLRLFNHIPSP--NIVSWTALIS-AHSNSPLSLNIFLSMLRH-----PTLSFLPNQRTL 102
           Y+L +F+ IPSP  +IV    L   + S+ P +  +F   +RH        SFLP     
Sbjct: 62  YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLP----- 116

Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
             + K  + +S A   G+ LH ++ K++    PF  +  +  Y+     + A+ VFDE+ 
Sbjct: 117 --ILKAVSKVS-ALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMS 173

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
            RDVV +  MI  + +   + ++  +F +M+ S+V      +   + A      M   R 
Sbjct: 174 HRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRA 233

Query: 223 IHG--------------------HAVVSGLD-----------RNVIVGTGLIDGYGKAGI 251
           I+                     +A    +D           RN+ V T ++ GY K G 
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           + DA+ +FD+     + + W  M++ Y +       L +F  +   G  PD  S  +V++
Sbjct: 294 LDDAQVIFDQT-EKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVIS 352

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
           A  N G+  ++ KW+        LE  L     LI+   + G L+    +   MP   + 
Sbjct: 353 ACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNV 410

Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
             W ++++  ++HG+A  A  +  R+   N   +   V    VL G      V E +K+ 
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARMKQENVEPNE--VTFVGVLYGCSHSGLVEEGKKIF 468


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 250/439 (56%), Gaps = 2/439 (0%)

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           C +A+V   +     D A+++FD + +RD V + AMI G+    R  ++L +F +MR + 
Sbjct: 270 CVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAG 329

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                  +  AL A A+L A+E+ + +H  A   G+  +V +GT LID Y K G V+ A 
Sbjct: 330 AAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAM 389

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFD ++   N   W + ++G A  G     L LF  +E  G  P+  +F+ VL     A
Sbjct: 390 EVFD-SMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMA 448

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E     + MK  + ++P LEHY C++   GRAGRL+DA      MP EP   VW A
Sbjct: 449 GLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGA 508

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+ S IH   ++      +L+ I   +D+A+V+++N+ +    W  V+ VR +MK + V
Sbjct: 509 LLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGV 568

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S IEV GKVH F  G + H R ++I   LAE+ +     GY+    E+L ++ +
Sbjct: 569 KKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEE 628

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            +K +A+  HSEKLA+AFGLV+  P    +RIVKNLR+C DCH+  K IS+V  REIV+R
Sbjct: 629 EDKEDAISLHSEKLAIAFGLVA-LPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMR 687

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F +G+C+C D W
Sbjct: 688 DRNRFHHFKDGACSCKDYW 706



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 8/205 (3%)

Query: 55  LFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           LF+ +P  + V+W A+I+ + ++  S   L +F  M RH   +    + TL S    CA 
Sbjct: 290 LFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEM-RHAGAAV--GEVTLVSALTACAQ 346

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
           L  A   G  +HS +    +      G+AL+  YS+  +   A +VFD + ER+V  + +
Sbjct: 347 LG-ALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTS 405

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS- 230
            + G A N    D L++F  M S+ V          LR  +    +++ R        + 
Sbjct: 406 AVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNH 465

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDA 255
           G+D  +     ++D YG+AG + DA
Sbjct: 466 GIDPWLEHYGCMVDLYGRAGRLDDA 490


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 181/532 (34%), Positives = 283/532 (53%), Gaps = 16/532 (3%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSN--SPLSLNIFLSMLRH--PTLSFLPNQRTLAS 104
           LSY+  +F+ IPSP+ +++  +I +HS      SL+ F SM  +  P  +F     T   
Sbjct: 38  LSYARYVFSRIPSPDTIAYNTIIRSHSRFFPSHSLSYFFSMRSNGIPLDNF-----TFPF 92

Query: 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164
           + K C+ L       L LHSL +K  L    F  +AL+  Y    S + A KVFDE+ ER
Sbjct: 93  VLKACSRLQ----INLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSER 148

Query: 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD-VGSTMYCVSGALRAAAELAAMEQCRVI 223
           D V +  +I  F  N    ++L +F  M+  D V      +   + A + L  +E  R +
Sbjct: 149 DSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWV 208

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
                  G   +V +GT LID + + G + ++  VF E ++V N + W A++ G    G 
Sbjct: 209 RAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVF-EKMAVRNVLTWTALINGLGIHGR 267

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               L +FH +   G  PD  +F  VL A  + GL  E     E ++  Y ++P L+HY 
Sbjct: 268 SMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYG 327

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
           C++  +GRAG L +A      MP +P++ +WR LL     H    +A K+  ++  I+  
Sbjct: 328 CMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSS 387

Query: 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER 463
            +   V+++NV    GRW E A +R  M+++R+ KE G S I V   +H F++GD  H +
Sbjct: 388 QNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQ 447

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
           +EDI   L+ ++ +    GY+     +LH++ + E+  +L YHSEKLA+AF ++S   + 
Sbjct: 448 SEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDK- 506

Query: 524 KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +T+RI+KNLRIC DCH   K+IS   ER+I++RD NR+H F  G C+C D W
Sbjct: 507 RTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 169/529 (31%), Positives = 290/529 (54%), Gaps = 10/529 (1%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D S+ N ++  YSK + +  +  LFN +P  + VS+  +IS++S +     SLN+F  M 
Sbjct: 278 DASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREM- 336

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
               + F       A++    A+LS +   G  +H  ++  +       G++LV  Y++ 
Sbjct: 337 --QCMGFDRRNFPFATMLSIAANLS-SLQVGRQVHCQAIVATADSILHVGNSLVDMYAKC 393

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
              D A+ +F  + +R  V + A+I G+ Q       L +F  MR +++ +     +  L
Sbjct: 394 EMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVL 453

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           +A+A  A++   + +H   + SG   NV  G+GL+D Y K G + DA +VF+E +   N+
Sbjct: 454 KASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEE-MPDRNA 512

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++WNA+++ YA  GD    +  F  +   G  PD  S L VL A  + G   +  ++ + 
Sbjct: 513 VSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQA 572

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
           M   Y + P  +HY C++  +GR GR  +AE++   MPFEPD  +W ++L+   I+    
Sbjct: 573 MSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQS 632

Query: 389 MASKMGKRLIDINPY-DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
           +A +  ++L  +    D +AYV ++N+ +  G+W+ V  V+K M++R ++K    SW+EV
Sbjct: 633 LAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEV 692

Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
             K+HVF + D+ H   ++I  K+ EL  E ER GY P    ++ ++ ++ K E+L YHS
Sbjct: 693 NHKIHVFSSNDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQDIDEQMKIESLKYHS 752

Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
           E+LA+AF L+S  P G  + ++KNLR CRDCH + K IS++V+R I  +
Sbjct: 753 ERLAVAFALIS-TPEGCPIVVMKNLRACRDCHAAIKLISKIVKRVITTQ 800



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 192/407 (47%), Gaps = 18/407 (4%)

Query: 11  PQNTSTDPRIVHARALK---SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSW 67
           PQN       VHA A+K    +    ++ N L+ +Y +   L  +  LF  I   + V++
Sbjct: 156 PQNAVGQ---VHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTF 212

Query: 68  TALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
             LI+ +    L   ++++FL M +       P+  T + + K    L H F  G  LH 
Sbjct: 213 NTLITGYEKDGLYTEAIHLFLKMRQS---GHKPSDFTFSGVLKAVVGL-HDFALGQQLHG 268

Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
           LS+          G+ ++HFYS+       + +F+E+ E D V Y  +I  ++Q  +  +
Sbjct: 269 LSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEE 328

Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
           SL++F +M+        +  +  L  AA L++++  R +H  A+V+  D  + VG  L+D
Sbjct: 329 SLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVD 388

Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
            Y K  +  +A  +F ++LS  ++++W A+++GY Q+G     L+LF  +       D+ 
Sbjct: 389 MYAKCEMFDEAELIF-KSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQS 447

Query: 305 SFLAVLTALCNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
           +F  VL A  +AG A     K +    +R      +   + L+    + G ++DA ++  
Sbjct: 448 TFATVLKA--SAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFE 505

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
            MP + +A  W AL+S  A +G  + A     ++I      DS  ++
Sbjct: 506 EMP-DRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSIL 551



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 135/284 (47%), Gaps = 10/284 (3%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRHPTL 93
           N +I+ Y K   LS +  LF+ +P   +V+WT L+   + +++   +  +F  M R  T 
Sbjct: 79  NTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCT- 137

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG--SALVHFYSRFRSP 151
             LP+  T  +L   C         G  +H+ ++KL      F    + L+  Y   R  
Sbjct: 138 --LPDYVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRL 194

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
           D A  +F+EI ++D V +  +I G+ ++    +++ +F  MR S    + +  SG L+A 
Sbjct: 195 DLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAV 254

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
             L      + +HG +V +G  R+  VG  ++  Y K   V + R +F+E +  L+ +++
Sbjct: 255 VGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNE-MPELDFVSY 313

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           N +++ Y+Q       L LF  ++  GF    + F  +L+   N
Sbjct: 314 NVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAAN 357


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 184/532 (34%), Positives = 290/532 (54%), Gaps = 16/532 (3%)

Query: 52  SLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLA-SLFK 107
           S  LF+ IP  ++VSWT++I+    +  +  ++ +F  +L   + S          S+  
Sbjct: 32  SRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLL 91

Query: 108 TC--ASLSHAFLFGLS--LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
            C  ++ S     G++  +H L +K         G+ L+  Y++F     AK VFD + E
Sbjct: 92  GCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAK-VFDGMNE 150

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
            D   + ++I  +AQN    ++ SVF DM  S  G+  Y  +  +       A++  + I
Sbjct: 151 SDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKS--GNFRY--NAVIMDXGLSGALQLGKCI 206

Query: 224 HGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
           H   +   L+ +V VGT ++D Y K   V  AR+ FD  + V N  +W AM+AGY   G 
Sbjct: 207 HHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFD-CMKVKNVKSWTAMVAGYGMHGR 265

Query: 284 QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT 343
               +E+F+ +   G  P+  +F++VL A  +AG+  E   W  RMK  + +EPG+EHY 
Sbjct: 266 AKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYL 325

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
           C++  +GRAG L     +   M  +PD  +W +LL    IH   ++     ++L +++  
Sbjct: 326 CMVDLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXS 384

Query: 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER 463
           +   YV+++N+ +  GRWDEV  +R +MK R + K  G S +E+KG++HV L GD+ H +
Sbjct: 385 NCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQ 444

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
            E IY  L +   + + LGY+P  + +LH+V + EK   L  HSEKLA+AFG+++  P G
Sbjct: 445 HEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVP-G 503

Query: 524 KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             + I+KNLRIC DC+   K I +VV REIVVRD  R+H F  GSC+CGD W
Sbjct: 504 SIIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 122/261 (46%), Gaps = 27/261 (10%)

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST----------- 200
           ++++ +FDEI +R VV + ++I G  QN R  D++ VF ++   + GS            
Sbjct: 30  NDSRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSV 89

Query: 201 -MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
            + CV  A          E    +HG  +  G +R V VG  L+D Y K G +  A +VF
Sbjct: 90  LLGCVVSAFSKLGWRGVTEG---VHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVA-KVF 145

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D  ++  +   WN+++A YAQ G  +    +F  +   G     + + AV+    + GL+
Sbjct: 146 D-GMNESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSG----NFRYNAVIM---DXGLS 197

Query: 320 GESE--KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           G  +  K I    ++  LE  +   T ++    +  R+E A +    M  + +   W A+
Sbjct: 198 GALQLGKCIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVK-NVKSWTAM 256

Query: 378 LSFSAIHGKADMASKMGKRLI 398
           ++   +HG+A  A ++  ++I
Sbjct: 257 VAGYGMHGRAKEAMEIFYKMI 277


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 305/569 (53%), Gaps = 17/569 (2%)

Query: 19  RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAH 74
           R +HA  +K  +  A+  + + L+  Y+    +  + ++F+ +P     +  W A+I  +
Sbjct: 291 REMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGY 350

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + + +   +L +F  M       F+P + T+AS+   CA  S AF    ++H   +K  +
Sbjct: 351 AQAGMDEEALRLFARM--EAEAGFVPCETTMASVLPACAR-SEAFAGKEAVHGYVVKRGM 407

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F  +AL+  Y+R    D A+++F  +   DVV +  +I G      + D+  +  +
Sbjct: 408 AGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLARE 467

Query: 192 MRSSDVGSTM---YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           M+  + G  +     +   L   A LAA  + + IHG+AV   LD +V VG+ L+D Y K
Sbjct: 468 MQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAK 527

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFL 307
            G ++ +R VFD  L   N+I WN ++  Y   G       LF  +   G A P+E +F+
Sbjct: 528 CGCLALSRAVFDR-LPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFM 586

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           A L A  ++G+     +    M+  + +EP  +   C++  +GRAGRL++A  +  +M  
Sbjct: 587 AALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMET 646

Query: 368 -EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
            E   + W  +L    +H    +    G+RL+++ P + S YV++ N+ S  G+W   AE
Sbjct: 647 GEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAE 706

Query: 427 VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
           VR  M+ R V KE G SWIEV G +H F+AG+  H  +E+++  +  L  E    GY P 
Sbjct: 707 VRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPD 766

Query: 487 WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
              +LH++ D +K   L  HSEKLA+AFGL+  AP G T+R+ KNLR+C DCHE+ K++S
Sbjct: 767 TSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAP-GATIRVAKNLRVCNDCHEAAKFLS 825

Query: 547 RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++V REIV+RDV R+H F NG C+CGD W
Sbjct: 826 KMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 11/203 (5%)

Query: 121 SLHSLSLKLSL--HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGF 176
           ++H+ +L+  L     P   +AL+  Y+R      A +VF  I +   D V + ++I   
Sbjct: 78  AIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISAL 137

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL----AAMEQCRVIHGHAVVSGL 232
               R   +L+    M +     T + +   LRA + L    AA+   R  H  A+ +GL
Sbjct: 138 CLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGL 197

Query: 233 --DRNVIVGTGLIDGYGKAGIVSDARRVF-DENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
                      L+  Y + G+V+DA+R+F        + + WN M++   Q G     ++
Sbjct: 198 LHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQ 257

Query: 290 LFHLLEMRGFAPDEYSFLAVLTA 312
             + +   G  PD  +F + L A
Sbjct: 258 TLYDMVALGVRPDGVTFASALPA 280


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 250/439 (56%), Gaps = 2/439 (0%)

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
           C +A+V   +     D A+++FD + +RD V + AMI G+    R  ++L +F +MR + 
Sbjct: 263 CVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAG 322

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                  +  AL A A+L A+E+ + +H  A   G+  +V +GT LID Y K G V+ A 
Sbjct: 323 AAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAM 382

Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
            VFD ++   N   W + ++G A  G     L LF  +E  G  P+  +F+ VL     A
Sbjct: 383 EVFD-SMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMA 441

Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
           GL  E     + MK  + ++P LEHY C++   GRAGRL+DA      MP EP   VW A
Sbjct: 442 GLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGA 501

Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
           LL+ S IH   ++      +L+ I   +D+A+V+++N+ +    W  V+ VR +MK + V
Sbjct: 502 LLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGV 561

Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           +K  G S IEV GKVH F  G + H R ++I   LAE+ +     GY+    E+L ++ +
Sbjct: 562 KKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEE 621

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            +K +A+  HSEKLA+AFGLV+  P    +RIVKNLR+C DCH+  K IS+V  REIV+R
Sbjct: 622 EDKEDAISLHSEKLAIAFGLVA-LPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMR 680

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F +G+C+C D W
Sbjct: 681 DRNRFHHFKDGACSCKDYW 699



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 8/205 (3%)

Query: 55  LFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           LF+ +P  + V+W A+I+ + ++  S   L +F  M RH   +    + TL S    CA 
Sbjct: 283 LFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEM-RHAGAAV--GEVTLVSALTACAQ 339

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
           L  A   G  +HS +    +      G+AL+  YS+  +   A +VFD + ER+V  + +
Sbjct: 340 LG-ALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTS 398

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS- 230
            + G A N    D L++F  M S+ V          LR  +    +++ R        + 
Sbjct: 399 AVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNH 458

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDA 255
           G+D  +     ++D YG+AG + DA
Sbjct: 459 GIDPWLEHYGCMVDLYGRAGRLDDA 483


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 292/537 (54%), Gaps = 17/537 (3%)

Query: 49  LSYSLRLFNHIPSPNIVSW-TALISAHSNSPLS--------LNIFLSMLRHPTLSFLPNQ 99
           L+Y+ ++F+ +  P+   W   L+  ++ S  S        + +F+ ML        P+ 
Sbjct: 77  LAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEE---GVAPDT 133

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
            T  SL K CA+ + A   G   H++++KL      +    L++ Y+       A+  F 
Sbjct: 134 YTFVSLLKACAA-ARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFG 192

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
                 VV Y AMI    ++SR  ++L +F +M++  +  T   V   L A A L A++ 
Sbjct: 193 RADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQL 252

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            R +H +    GL   V V T L+D Y K G + DA  VF + +   +  AW+ M+  YA
Sbjct: 253 GRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVF-QGMESRDRQAWSVMIVAYA 311

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
             G     + LF  ++ +G  PD+ +FL +L A  ++GL  E  ++ + MK  + + PG+
Sbjct: 312 NHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMK-DHGIVPGI 370

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
           +HY C+   + R+G+LE A +    +P  P   +WR LLS    HG  ++  ++ +R+++
Sbjct: 371 KHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILE 430

Query: 400 INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDR 459
           ++      YVI +N+ +  G W+E+  VRK+M D+ V K  G S IE+   VH F AGD 
Sbjct: 431 LDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDG 490

Query: 460 MHERTEDIYTKLAELMEECERLGYVPVWDEMLH-NVGDREKREALWYHSEKLALAFGLVS 518
            H ++++    + E++++ + +GY+P    + H  +G+ EK  +L YHSEKLA+AFGL++
Sbjct: 491 RHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSEKLAIAFGLLN 550

Query: 519 GAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            AP G TLR+VKNLR+C DCH   K++S V  R I++RD+NR+H F  G C+CGD W
Sbjct: 551 TAP-GATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGICSCGDYW 606


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 181/562 (32%), Positives = 304/562 (54%), Gaps = 7/562 (1%)

Query: 17  DPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
           D + +H   L+S    + S+ N LIT Y+K   L  S  LF  +   ++VSW A+I+A++
Sbjct: 188 DGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYT 247

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
                 + F    R  TL   P+  T +S+   CAS       G  LH + +     D+ 
Sbjct: 248 LYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACAS-PKRLEDGRMLH-VRITARGFDRD 305

Query: 136 FC-GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
           F   + L+  ++R  S ++A++ F  I ++++  +  M+  +AQ  +  D+L ++ +M  
Sbjct: 306 FAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLL 365

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
                  +  S  + + A L A+ + + IH  +   G +++VI+GT L++ Y K G ++D
Sbjct: 366 EGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLAD 425

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           A++ FD  +S  + ++W+AM+A  AQ G     LEL HL+ ++G A +E +  +VL A  
Sbjct: 426 AKKSFD-GISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACS 484

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
           + G   E   +   +   + +E   E+    I  +GRAG L++AE +   MPF+      
Sbjct: 485 HGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVAL 544

Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
             LL    +HG       + KR++ + P +  +YV++ N+ +  GRWD+VA++R+ M+ +
Sbjct: 545 VTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKK 604

Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC-ERLGYVPVWDEMLHN 493
            V+++ G S IE + K++ F  GD  + R  +I  +L  L     E  GYVP   ++ H+
Sbjct: 605 GVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHD 664

Query: 494 VGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREI 553
           V D +K E L +HSEK+A+ FGL++ +P G TLRI+KNLR+C DCH   K  S++  R I
Sbjct: 665 VSDDKKEELLKFHSEKMAMGFGLIT-SPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRI 723

Query: 554 VVRDVNRYHRFLNGSCTCGDLW 575
           +VRD  R+H F  G C+CGD W
Sbjct: 724 IVRDGTRFHHFEGGICSCGDYW 745



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 134/270 (49%), Gaps = 2/270 (0%)

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
           F  + ++  Y + +SP++A++VFD I++R+   +  ++  + QN+   ++L V+ +M   
Sbjct: 3   FLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRK 62

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
           ++    Y +S  L A  +L  +E+ R++   A   G +++V+V T LI  + K G + +A
Sbjct: 63  EISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEA 122

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             VF    ++ + I+  AM+  Y + G     L+ +  +  +G  PD +++ A+L A C+
Sbjct: 123 ESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGA-CS 181

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           +       K I +  +  K    +     LI+   + G L+D++ + + M  + D   W 
Sbjct: 182 SPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVK-DVVSWN 240

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           A+++   ++G    A  +  R+  +    D
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPD 270



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 157/371 (42%), Gaps = 11/371 (2%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
           D  + N +I  Y K      + ++F+ I   N  SW+ L+  +  + +   +L ++  M+
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R        +  TL+S+   C  L      G  +   + +L         ++L+H +++ 
Sbjct: 61  RKE---ISIDAYTLSSVLAACTKLLDV-EEGRMVQRKAEELGFEKDVVVATSLIHLFAKC 116

Query: 149 RSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
              + A+ VF  +   RD++   AMI  + ++ +   +L  +  MRS  +    +  +  
Sbjct: 117 GCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAI 176

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A +    +   + IH H + S    N+ V   LI  Y K G + D++ +F   + V +
Sbjct: 177 LGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLF-LTMDVKD 235

Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++WNAM+A Y   G       LFH +   G  PD Y+F ++L A  +     +      
Sbjct: 236 VVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHV 295

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
           R+  R   +        LIS   R G LE A R   ++  + +   W  +L+  A   K 
Sbjct: 296 RITAR-GFDRDFAMQNNLISMFTRCGSLESARRYFYSIE-KKELGAWNTMLAAYAQFDKG 353

Query: 388 DMASKMGKRLI 398
             A  + K ++
Sbjct: 354 KDALFLYKNML 364


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 305/569 (53%), Gaps = 17/569 (2%)

Query: 19  RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAH 74
           R +HA  +K  +  A+  + + L+  Y+    +  + ++F+ +P     +  W A+I  +
Sbjct: 293 REMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGY 352

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + + +   +L +F  M       F+P + T+AS+   CA  S AF    ++H   +K  +
Sbjct: 353 AQAGMDEEALRLFARM--EAEAGFVPCETTMASVLPACAR-SEAFAGKEAVHGYVVKRGM 409

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F  +AL+  Y+R    D A+++F  +   DVV +  +I G      + D+  +  +
Sbjct: 410 AGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLARE 469

Query: 192 MRSSDVGSTM---YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           M+  + G  +     +   L   A LAA  + + IHG+AV   LD +V VG+ L+D Y K
Sbjct: 470 MQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAK 529

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFL 307
            G ++ +R VFD  L   N+I WN ++  Y   G       LF  +   G A P+E +F+
Sbjct: 530 CGCLALSRAVFDR-LPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFM 588

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           A L A  ++G+     +    M+  + +EP  +   C++  +GRAGRL++A  +  +M  
Sbjct: 589 AALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMET 648

Query: 368 -EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
            E   + W  +L    +H    +    G+RL+++ P + S YV++ N+ S  G+W   AE
Sbjct: 649 GEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAE 708

Query: 427 VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
           VR  M+ R V KE G SWIEV G +H F+AG+  H  +E+++  +  L  E    GY P 
Sbjct: 709 VRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPD 768

Query: 487 WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
              +LH++ D +K   L  HSEKLA+AFGL+  AP G T+R+ KNLR+C DCHE+ K++S
Sbjct: 769 TSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAP-GATIRVAKNLRVCNDCHEAAKFLS 827

Query: 547 RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++V REIV+RDV R+H F NG C+CGD W
Sbjct: 828 KMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 11/203 (5%)

Query: 121 SLHSLSLKLSL--HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGF 176
           ++H+ +L+  L     P   +AL+  Y+R      A +VF  I +   D V + ++I   
Sbjct: 80  AIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISAL 139

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL----AAMEQCRVIHGHAVVSGL 232
               R   +L+    M +     T + +   LRA + L    AA+   R  H  A+ +GL
Sbjct: 140 CLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGL 199

Query: 233 --DRNVIVGTGLIDGYGKAGIVSDARRVF-DENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
                      L+  Y + G+V+DA+R+F        + + WN M++   Q G     ++
Sbjct: 200 LHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQ 259

Query: 290 LFHLLEMRGFAPDEYSFLAVLTA 312
             + +   G  PD  +F + L A
Sbjct: 260 TLYDMVALGVRPDGVTFASALPA 282


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 168/547 (30%), Positives = 304/547 (55%), Gaps = 15/547 (2%)

Query: 37   NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
            N+L+  YSK   ++ + ++F  I   +++SW A+I+   ++     +L+ F  M++   +
Sbjct: 517  NSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTF-GMMQEANI 575

Query: 94   SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH--DKPFCGSALVHFYSRFRSP 151
               P++ TL SL K C+S    +  G  +H   ++   H         +LV  Y +    
Sbjct: 576  KERPDEFTLTSLLKACSSTGMIYA-GKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYL 634

Query: 152  DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             +A+K FD+I+E+ ++ + ++I+G+AQ    V+++ +F  ++  +     + +S  +   
Sbjct: 635  FSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVF 694

Query: 212  AELAAMEQCRVIHGHAVV--SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
            A+ A + Q + +   AV   SGL+ +V+    ++D Y K G+V +A + F E + + + I
Sbjct: 695  ADFALLRQGKQMQALAVKLPSGLETSVL--NSVVDMYLKCGLVDEAEKCFAE-MQLKDVI 751

Query: 270  AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            +W  ++ GY + G     + +F+ +      PDE  +LAVL+A  ++G+  E E+   ++
Sbjct: 752  SWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKL 811

Query: 330  KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
               + ++P +EHY C++  +GRAGRL++A+ +   MP +P+  +W+ LLS   +HG  ++
Sbjct: 812  LETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIEL 871

Query: 390  ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG 449
              ++GK L+ I+  + + YV+++N+    G W+E    R++   + ++KE G SW+E++ 
Sbjct: 872  GKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIER 931

Query: 450  KVHVFLAGDRMHERTEDIYTKLAELMEEC-ERLGYVPVWDEMLHNVGDREKREALWYHSE 508
            +VH F +G+  H  T  I   L E      E LGYV      LH++ D  K E L  HSE
Sbjct: 932  EVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSE 991

Query: 509  KLALAFGLVSGA--PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
            KLA+   L +G    +GKT+R+ KNLR+C DCHE  K +S++ +   VVRD  R+H F +
Sbjct: 992  KLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFED 1051

Query: 567  GSCTCGD 573
            G C+CGD
Sbjct: 1052 GCCSCGD 1058



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 190/402 (47%), Gaps = 21/402 (5%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPL--SLNIFLSMLRHPTL 93
           N LI  Y K      + ++F+ +P  N+VSW+AL+S H  N  L  SL++F  M R    
Sbjct: 416 NYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQ--- 472

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
              PN+ T ++  K C  L +A   GL +H   LK+        G++LV  YS+    + 
Sbjct: 473 GIYPNEFTFSTNLKACGLL-NALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINE 531

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS--TMYCVSGALRAA 211
           A+KVF  I +R ++ + AMI GF        +L  F  M+ +++      + ++  L+A 
Sbjct: 532 AEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKAC 591

Query: 212 AELAAMEQCRVIHGHAVVSGL--DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           +    +   + IHG  V SG     +  +   L+D Y K G +  AR+ FD+ +     I
Sbjct: 592 SSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQ-IKEKTMI 650

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +W++++ GYAQ+G+    + LF  L+      D ++  +++    +  L  +  K ++ +
Sbjct: 651 SWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQG-KQMQAL 709

Query: 330 KVRYKLEPGLEH--YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            V  KL  GLE      ++    + G +++AE+    M  + D   W  +++    HG  
Sbjct: 710 AV--KLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLK-DVISWTVVITGYGKHGLG 766

Query: 388 DMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEV 427
             + ++   ++  +I P D+  Y+ V +  S  G   E  E+
Sbjct: 767 KKSVRIFYEMLRHNIEP-DEVCYLAVLSACSHSGMIKEGEEL 807


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 305/569 (53%), Gaps = 17/569 (2%)

Query: 19  RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAH 74
           R +HA  +K  +  A+  + + L+  Y+    +  + ++F+ +P     +  W A+I  +
Sbjct: 291 REMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGY 350

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + + +   +L +F  M       F+P + T+AS+   CA  S AF    ++H   +K  +
Sbjct: 351 AQAGMDEEALRLFARM--EAEAGFVPCETTMASVLPACAR-SEAFAGKEAVHGYVVKRGM 407

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F  +AL+  Y+R    D A+++F  +   DVV +  +I G      + D+  +  +
Sbjct: 408 AGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLARE 467

Query: 192 MRSSDVGSTM---YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           M+  + G  +     +   L   A LAA  + + IHG+AV   LD +V VG+ L+D Y K
Sbjct: 468 MQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAK 527

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFL 307
            G ++ +R VFD  L   N+I WN ++  Y   G       LF  +   G A P+E +F+
Sbjct: 528 CGCLALSRAVFDR-LPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFM 586

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           A L A  ++G+     +    M+  + +EP  +   C++  +GRAGRL++A  +  +M  
Sbjct: 587 AALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEA 646

Query: 368 -EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
            E   + W  +L    +H    +    G+RL+++ P + S YV++ N+ S  G+W   AE
Sbjct: 647 GEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAE 706

Query: 427 VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
           VR  M+ R V KE G SWIEV G +H F+AG+  H  +E+++  +  L  E    GY P 
Sbjct: 707 VRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPD 766

Query: 487 WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
              +LH++ D +K   L  HSEKLA+AFGL+  AP G T+R+ KNLR+C DCHE+ K++S
Sbjct: 767 TSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAP-GATIRVAKNLRVCNDCHEAAKFLS 825

Query: 547 RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++V REIV+RDV R+H F NG C+CGD W
Sbjct: 826 KMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 11/203 (5%)

Query: 121 SLHSLSLKLSL--HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGF 176
           ++H+ +L+  L     P   +AL+  Y+R      A +VF  I +   D V + ++I   
Sbjct: 78  AIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISAL 137

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL----AAMEQCRVIHGHAVVSGL 232
               R   +L+    M +     T + +   LRA + L    AA+   R  H  A+ +GL
Sbjct: 138 CLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGL 197

Query: 233 --DRNVIVGTGLIDGYGKAGIVSDARRVF-DENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
                      L+  Y + G+V+DA+R+F        + + WN M++   Q G     ++
Sbjct: 198 LHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQ 257

Query: 290 LFHLLEMRGFAPDEYSFLAVLTA 312
             + +   G  PD  +F + L A
Sbjct: 258 TLYDMVALGVRPDGVTFASALPA 280


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 305/569 (53%), Gaps = 17/569 (2%)

Query: 19  RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAH 74
           R +HA  +K  +  A+  + + L+  Y+    +  + ++F+ +P     +  W A+I  +
Sbjct: 139 REMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGY 198

Query: 75  SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
           + + +   +L +F  M       F+P + T+AS+   CA  S AF    ++H   +K  +
Sbjct: 199 AQAGMDEEALRLFARM--EAEAGFVPCETTMASVLPACAR-SEAFAGKEAVHGYVVKRGM 255

Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
               F  +AL+  Y+R    D A+++F  +   DVV +  +I G      + D+  +  +
Sbjct: 256 AGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLARE 315

Query: 192 MRSSDVGSTM---YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
           M+  + G  +     +   L   A LAA  + + IHG+AV   LD +V VG+ L+D Y K
Sbjct: 316 MQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAK 375

Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFL 307
            G ++ +R VFD  L   N+I WN ++  Y   G       LF  +   G A P+E +F+
Sbjct: 376 CGCLALSRAVFDR-LPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFM 434

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
           A L A  ++G+     +    M+  + +EP  +   C++  +GRAGRL++A  +  +M  
Sbjct: 435 AALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEA 494

Query: 368 -EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
            E   + W  +L    +H    +    G+RL+++ P + S YV++ N+ S  G+W   AE
Sbjct: 495 GEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAE 554

Query: 427 VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
           VR  M+ R V KE G SWIEV G +H F+AG+  H  +E+++  +  L  E    GY P 
Sbjct: 555 VRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPD 614

Query: 487 WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
              +LH++ D +K   L  HSEKLA+AFGL+  AP G T+R+ KNLR+C DCHE+ K++S
Sbjct: 615 TSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAP-GATIRVAKNLRVCNDCHEAAKFLS 673

Query: 547 RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           ++V REIV+RDV R+H F NG C+CGD W
Sbjct: 674 KMVGREIVLRDVRRFHHFRNGQCSCGDYW 702


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 181/513 (35%), Positives = 287/513 (55%), Gaps = 5/513 (0%)

Query: 64  IVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
           + S  A  + H   PL+   F   L    L F  +     ++ K CA LS A   G+++H
Sbjct: 72  LFSSLARAATHQGLPLAALAFYRCLLSAALPF--SSFAFTAVAKACADLS-ALRTGMTVH 128

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
           + S+ L      F  +ALV  YS+      A+K+FD IR+++VV + AMI G+ QN    
Sbjct: 129 AHSILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAE 188

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
             + V+ +M+ +            L A A+  A++  R +    V   +D +V +G+ L+
Sbjct: 189 QGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALV 248

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           + Y + G+V  AR+ FD  L   N + W +M+AGY   G     ++L+HL+  +G  P++
Sbjct: 249 NMYARCGVVDKARQWFDV-LQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPND 307

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA-ERIA 362
            +F+AVL+A  +AGL  E       MK  Y L P +EHY  ++   GRAGRLE+A + I 
Sbjct: 308 VTFVAVLSACAHAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIR 367

Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
            +MP +P   VW A+L    +H    +  ++ +RLI + P + S +V+++N+ +  G+  
Sbjct: 368 DSMPGDPGPEVWTAILGACKMHKNFSLGVEVAERLIRLEPENPSYHVLLSNIYALSGKMY 427

Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
            V +VR  M  RR++K+ G S IE+ G  H+F  G++ H++T +IY  L EL+      G
Sbjct: 428 HVEKVRNTMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQKTREIYQYLEELVHRISAAG 487

Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
           Y+P  + +LH + + E+  AL YHSEKLA+A+GL+  A     LR++KNLRIC DCH + 
Sbjct: 488 YMPETESVLHELEEEEREGALRYHSEKLAVAYGLMMSAGSTTPLRVIKNLRICSDCHLAI 547

Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           K++S V  REI+VRD +R+H F +G C+C + W
Sbjct: 548 KFMSAVENREIIVRDKHRFHHFKDGKCSCLEYW 580



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 9/248 (3%)

Query: 21  VHARA-LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           VHA + L    +DR +   L+  YSK   L  + +LF+ I   N+V+W A+IS +  + L
Sbjct: 127 VHAHSILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGL 186

Query: 80  S---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +   + ++  M        +P+  T  +    CA  + A   G  +    +   +    F
Sbjct: 187 AEQGIEVYKEM---KVAKAVPDSMTFVATLSACAQ-AGALDLGREVERRIVSERMDISVF 242

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
            GSALV+ Y+R    D A++ FD ++ER+VV + +MI G+  +    +++ ++  MR   
Sbjct: 243 LGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKG 302

Query: 197 VGSTMYCVSGALRAAAELAAMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
                      L A A    + + R        V GL   V     ++D YG+AG + +A
Sbjct: 303 PPPNDVTFVAVLSACAHAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEA 362

Query: 256 RRVFDENL 263
            +   +++
Sbjct: 363 MQFIRDSM 370


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 173/532 (32%), Positives = 281/532 (52%), Gaps = 11/532 (2%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASL 105
           +SY+ +LF+ +  P    W  ++  +  + +   +++++  M RH  L   P+  T   +
Sbjct: 85  MSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKM-RH--LGVRPDPFTFPFV 141

Query: 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165
            K CA L+  +  GL +H   +K  L       + L+  Y +F     A+ +F  + ERD
Sbjct: 142 IKACAELAELWA-GLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERD 200

Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
           +V + A+I    Q      +L  F +M  + +      +  AL A   L  +E    I+ 
Sbjct: 201 LVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYE 260

Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
            A   G+D N+IV    +D   K G +  A  +FDE +   N I+W+ ++ GYA  G+  
Sbjct: 261 FAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDE-MPQRNVISWSTVIGGYAVNGESE 319

Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR--YKLEPGLEHYT 343
             L LF  ++ +G  P+  +FLAVL+A  + G   E  ++   M       ++P  EHY 
Sbjct: 320 KALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYA 379

Query: 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403
           C++  +GR+G LE+A      MP E D  +W ALL   AIH    +   +   L ++ P 
Sbjct: 380 CMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPE 439

Query: 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHER 463
             S +V+++N+ +  GRW  V +VR+ MK +  RK    S +E  G++H+   GD+ H +
Sbjct: 440 IASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQ 499

Query: 464 TEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRG 523
           +  I  KL +L+++ + +GY+P  D + H+V D EK   L  HSEKLA+AF L++G+P+ 
Sbjct: 500 SASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPK- 558

Query: 524 KTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
             +R++KNLRIC DCH   K +SR+  REI++RD NR+H F NG C+C D W
Sbjct: 559 FPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610


>gi|302755875|ref|XP_002961361.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
 gi|300170020|gb|EFJ36621.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
          Length = 1121

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 199/589 (33%), Positives = 315/589 (53%), Gaps = 35/589 (5%)

Query: 13   NTSTDPR------IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV 65
            N+ TDP       ++H + ++   +AD  + + +I  Y +   L  +  +F  + + +++
Sbjct: 542  NSCTDPASLQDGVLMHEKIVQCGYEADTVVASAVINMYGRCGGLDRAREIFTRVKTFDVI 601

Query: 66   SWTALISAHSN---SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTC---ASLSHAFLFG 119
             WT +++ +     +   +  F SML H  L   P   TL +L  TC   + L H F  G
Sbjct: 602  LWTGMLTVYCQLGRTKQVMEHFRSML-HEGLK--PTGVTLVNLI-TCVADSGLEH-FRDG 656

Query: 120  LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
            + + SL+ +  L  +    ++L+  +S FRS   A+ +FD   E+ V  +  M+  + + 
Sbjct: 657  VWISSLAWESGLESETMVANSLIEMFSEFRSLSQARAIFDRNPEKSVALHTTMLAAYVKG 716

Query: 180  SRLVDS-LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
             R  ++ L++FA M    +  +   +  A+ A   LA     + +H  A   GL+    V
Sbjct: 717  ERGKEAALTLFARMLLEGLEPSSVTLVTAMSACGGLADPSSSKRVHERARELGLESETCV 776

Query: 239  GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
              GL+D YGKAG V  AR +FD  L   N   WNAM   Y Q G    VL L   ++  G
Sbjct: 777  ANGLVDMYGKAGDVDTARYIFDRALR-RNVTTWNAMAGAYRQCGVTRGVLWLVRTMQRDG 835

Query: 299  FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
            + PD  +F+++L+   ++GL  E+      M+  + ++P  +HY+C+I  + RAG L+ A
Sbjct: 836  YRPDSVTFVSLLSVCGHSGLLEEARYNFVAMRREFGIDPSPKHYSCVIDLLARAGELQQA 895

Query: 359  E----RIAMAMPFEPDAAVWRALL-SFSAIHGKADMASKMGKRLIDINPYD-------DS 406
            E    RI+++ P    + +W ALL +  ++   +  A +  +  +D+   +        +
Sbjct: 896  EDFIARISVSSP--ASSPMWMALLGACRSLGNSSSRARRAARNAMDVEKMEPRSQHDPSA 953

Query: 407  AYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTED 466
            A+V +AN+ +  G WDE   +RK M ++ +RKE GRS I VK ++H F+AGDR H R E+
Sbjct: 954  AHVALANICAASGNWDEALSIRKAMAEKGLRKEPGRSLIAVKNRLHEFVAGDRDHPRREE 1013

Query: 467  IYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTL 526
            IY +L  L       GYV     + HNVG+ +KR+ L  HSEKLA+AFG++S  P G +L
Sbjct: 1014 IYAELRRLERAMVDRGYVVDTGMVTHNVGEADKRDLLGCHSEKLAVAFGVLS-TPPGSSL 1072

Query: 527  RIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            RI+KNLR C DCH + K IS +  REIVVRD NR+H F NGSC+CGD W
Sbjct: 1073 RIIKNLRACGDCHTAIKLISAIEGREIVVRDSNRFHHFRNGSCSCGDYW 1121



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 166/374 (44%), Gaps = 29/374 (7%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLR 89
           R + N L+  Y K      + R F+ I   NI SWT+++ A+ ++ L   +L  F  M++
Sbjct: 164 RFLGNCLVQMYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIK 223

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF-----CGSALVHF 144
                  P++    +    C  L      G  +H       + DKP       G+ALV  
Sbjct: 224 ---AGVEPDRLVFLAALNVCGILKR-LEDGAGIHR-----QIQDKPLDSDLEIGNALVSM 274

Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
           Y +    D AK++FD +  R+V+ +  ++  FA+N R  ++  +   M    +      +
Sbjct: 275 YGKCGRLDLAKELFDCLERRNVISWTILVSVFAENGRRRETWGLLRSMAVEGIKPDKVLL 334

Query: 205 SGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF---- 259
              L   +    + E   + H + V  GLDR  +V T L+  + + G V  AR +F    
Sbjct: 335 LTLLNVCSSRGVLDEDSWMAHDYIVGGGLDREAVVATALLSMFARCGRVDKAREIFEKVA 394

Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
           D +  V+    WNAM+  YA +G     L L   L+++G  P+  +F++ L A C++   
Sbjct: 395 DHSAQVIE--CWNAMITAYAHRGCSKEALFLLDSLQLQGVKPNCITFISSLGA-CSSLQD 451

Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
           G +   +  +      +  +     L++  G+ G L D+ ++   M  E D A W + ++
Sbjct: 452 GRA---LHLLIHESGFDQEVSVANALVTMYGKCGSLLDSAKLFSEMA-EKDLASWNSAIA 507

Query: 380 FSAIHGKADMASKM 393
             + HG++D   K+
Sbjct: 508 AHSYHGRSDECIKL 521



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 148/343 (43%), Gaps = 23/343 (6%)

Query: 33  RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLR 89
           R + N L+  Y K      + R F+ I   NI SWT+++ A+ ++ L   +L  F  M++
Sbjct: 56  RFLGNCLVQMYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIK 115

Query: 90  HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK--LSLHDKP-----FCGSALV 142
                  P++   A L K C  L      G  LH+   +  L L D+      F G+ LV
Sbjct: 116 ---AGVEPDRLVYARLLKECGRLGD-LAQGKRLHAQIRESGLLLDDREESGARFLGNCLV 171

Query: 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
             Y +    D A++ FD I  +++  + +++V +        +L  F  M  + V     
Sbjct: 172 QMYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRL 231

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
               AL     L  +E    IH       LD ++ +G  L+  YGK G +  A+ +FD  
Sbjct: 232 VFLAALNVCGILKRLEDGAGIHRQIQDKPLDSDLEIGNALVSMYGKCGRLDLAKELFD-C 290

Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
           L   N I+W  +++ +A+ G +     L   + + G  PD+   L +L    + G+  E 
Sbjct: 291 LERRNVISWTILVSVFAENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDE- 349

Query: 323 EKWIERMKVRYKLEPGLEH----YTCLISAMGRAGRLEDAERI 361
           + W   M   Y +  GL+      T L+S   R GR++ A  I
Sbjct: 350 DSW---MAHDYIVGGGLDREAVVATALLSMFARCGRVDKAREI 389



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 160/361 (44%), Gaps = 25/361 (6%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTL 93
           S+ N L+T Y K   L  S +LF+ +   ++ SW + I+AHS    S      + +    
Sbjct: 469 SVANALVTMYGKCGSLLDSAKLFSEMAEKDLASWNSAIAAHSYHGRSDECIKLLDQMRGE 528

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
            FL  + T  +   +C   + +   G+ +H   ++          SA+++ Y R    D 
Sbjct: 529 GFLYEKVTFLTALNSCTDPA-SLQDGVLMHEKIVQCGYEADTVVASAVINMYGRCGGLDR 587

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A+++F  ++  DV+ +  M+  + Q  R    +  F  M    +  T   +   +   A+
Sbjct: 588 AREIFTRVKTFDVILWTGMLTVYCQLGRTKQVMEHFRSMLHEGLKPTGVTLVNLITCVAD 647

Query: 214 LAAMEQCRV---IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            + +E  R    I   A  SGL+   +V   LI+ + +   +S AR +FD N     S+A
Sbjct: 648 -SGLEHFRDGVWISSLAWESGLESETMVANSLIEMFSEFRSLSQARAIFDRNPE--KSVA 704

Query: 271 WN-AMMAGYAQ-QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
            +  M+A Y + +  +   L LF  + + G  P   + +  ++A    GLA  S    +R
Sbjct: 705 LHTTMLAAYVKGERGKEAALTLFARMLLEGLEPSSVTLVTAMSAC--GGLADPSSS--KR 760

Query: 329 MKVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
           +  R + E GLE  TC    L+   G+AG ++ A  I        D A+ R + +++A+ 
Sbjct: 761 VHERAR-ELGLESETCVANGLVDMYGKAGDVDTARYIF-------DRALRRNVTTWNAMA 812

Query: 385 G 385
           G
Sbjct: 813 G 813



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 156/365 (42%), Gaps = 27/365 (7%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLS 86
           K   +D  I N L++ Y K   L  +  LF+ +   N++SWT L+S  + +      +  
Sbjct: 259 KPLDSDLEIGNALVSMYGKCGRLDLAKELFDCLERRNVISWTILVSVFAENGRRRETWGL 318

Query: 87  MLRHPTLSFLPNQRTLASLFKTCAS---------LSHAFLFGLSLHSLSLKLSLHDKPFC 137
           +         P++  L +L   C+S         ++H ++ G  L           +   
Sbjct: 319 LRSMAVEGIKPDKVLLLTLLNVCSSRGVLDEDSWMAHDYIVGGGLDR---------EAVV 369

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERD---VVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
            +AL+  ++R    D A+++F+++ +     + C+ AMI  +A      ++L +   ++ 
Sbjct: 370 ATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAYAHRGCSKEALFLLDSLQL 429

Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
             V         +L A + L   +  R +H     SG D+ V V   L+  YGK G + D
Sbjct: 430 QGVKPNCITFISSLGACSSL---QDGRALHLLIHESGFDQEVSVANALVTMYGKCGSLLD 486

Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
           + ++F E ++  +  +WN+ +A ++  G     ++L   +   GF  ++ +FL  L + C
Sbjct: 487 SAKLFSE-MAEKDLASWNSAIAAHSYHGRSDECIKLLDQMRGEGFLYEKVTFLTALNS-C 544

Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
               + +    +    V+   E      + +I+  GR G L+ A  I   +    D  +W
Sbjct: 545 TDPASLQDGVLMHEKIVQCGYEADTVVASAVINMYGRCGGLDRAREIFTRVK-TFDVILW 603

Query: 375 RALLS 379
             +L+
Sbjct: 604 TGMLT 608


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 193/591 (32%), Positives = 306/591 (51%), Gaps = 53/591 (8%)

Query: 21  VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSN 76
           +HA+ ++S    D  + + ++  Y+K      + R+F+ +   N VSWT LI     +  
Sbjct: 316 LHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGC 375

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
              SL +F + +R   ++   +Q  LA++   C++     L    LHSLSLK        
Sbjct: 376 FSESLELF-NQMRAELMTV--DQFALATIISGCSNRMDMCL-ARQLHSLSLKSGHTRAVV 431

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  Y++  +  NA+ +F  + ERD+V +  M+  ++Q   +  +   F  M + +
Sbjct: 432 ISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRN 491

Query: 197 V------------------GSTMYCVS--------------GALRAAAELAAMEQCRVIH 224
           V                  G  MY                    R  A++ A +    I 
Sbjct: 492 VITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQIT 551

Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
           GH V  GL  +  V   +I  Y K G +S+AR++FD  LS  + ++WNAM+ GY+Q G  
Sbjct: 552 GHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFD-FLSRKDLVSWNAMITGYSQHGMG 610

Query: 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
              +E+F  +  +G  PD  S++AVL++  ++GL  E + + + +K  + + PGLEH++C
Sbjct: 611 KQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSC 670

Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404
           ++  + RAG L +A+ +   MP +P A VW ALLS    HG  ++A    K L D++  D
Sbjct: 671 MVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPD 730

Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERT 464
              Y+++A + +  G+  + A+VRK+M+D+ ++K  G SW+EVK KVHVF A D  H + 
Sbjct: 731 SGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQV 790

Query: 465 EDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK 524
             I  KL ELME+  +LGYV             E   +  +HSEKLA+AFG+++  P   
Sbjct: 791 IAIREKLDELMEKIAQLGYVRT-----------ESLRSEIHHSEKLAVAFGIMN-LPAWM 838

Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            + I+KNLRIC DCH   K IS V  RE V+RD  R+H F  GSC+CGD W
Sbjct: 839 PIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 45/401 (11%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFL 96
           N+++  Y+KS  + ++L LF  +P  ++VSW  ++SA S S  +       +        
Sbjct: 232 NSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVR 291

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
            +  T  S    CA LS +  +G  LH+  ++      P+  SA+V  Y++      A++
Sbjct: 292 LDSTTYTSSLTACAKLS-SLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARR 350

Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216
           VF  +R+R+ V +  +I GF Q     +SL +F  MR+  +    + ++  +   +    
Sbjct: 351 VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMD 410

Query: 217 MEQCRVIHGHAVVSGLDRNVIVG-------------------------------TGLIDG 245
           M   R +H  ++ SG  R V++                                TG++  
Sbjct: 411 MCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTA 470

Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH-LLEMRGFAPDEY 304
           Y + G +  AR  FD  +S  N I WNAM+  Y Q G +   L+++  +L  +   PD  
Sbjct: 471 YSQVGNIGKAREFFD-GMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWV 529

Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           +++ +     + G A +    I    V+  L         +I+   + GR+ +A +I   
Sbjct: 530 TYVTLFRGCADMG-ANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDF 588

Query: 365 MPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
           +    D   W A+++  + HG       MGK+ I+I  +DD
Sbjct: 589 LS-RKDLVSWNAMITGYSQHG-------MGKQAIEI--FDD 619



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 167/381 (43%), Gaps = 46/381 (12%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNI---FLSMLRHPT 92
           +N ++  Y+K   LS +  LF  +P  ++ SW  L+S +  S   L+    F+SM R  +
Sbjct: 98  HNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRR--S 155

Query: 93  LSFLPNQRTLASLFKTCASLS-HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
              LPN  T     K+C +L  H     L L  L  K      P   + +V  + R  + 
Sbjct: 156 GDSLPNAFTFGCAMKSCGALGWHEV--ALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAV 213

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFA-------------------------------QNS 180
           D A K F +I    V C  +M+ G+A                               Q+ 
Sbjct: 214 DFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSG 273

Query: 181 RLVDSLSVFADM--RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           R  ++LSV  DM  R   + ST Y  + +L A A+L+++   + +H   + S    +  V
Sbjct: 274 RAREALSVAVDMHNRGVRLDSTTY--TSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYV 331

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            + +++ Y K G   +ARRVF  +L   N+++W  ++ G+ Q G  S  LELF+ +    
Sbjct: 332 ASAMVELYAKCGCFKEARRVF-SSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAEL 390

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
              D+++ LA + + C+  +     + +  + ++      +     LIS   + G L++A
Sbjct: 391 MTVDQFA-LATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNA 449

Query: 359 ERIAMAMPFEPDAAVWRALLS 379
           E I  +M  E D   W  +L+
Sbjct: 450 ESIFSSME-ERDIVSWTGMLT 469



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 38/233 (16%)

Query: 123 HSLSLKLSLHDKPFCGSALVHFY-SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
           H   + + L    F  + L+H Y S    PD    +  +I E +V+ +  M+ G+A+   
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME----------------------- 218
           L D+  +F  M   DV S    +SG  ++   L AME                       
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 219 QCRVIHGHAVV---------SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
            C  +  H V           G   +  V TG++D + + G V  A + F + +      
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQ-IERPTVF 229

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
             N+M+AGYA+       LELF  +  R    D  S+  +++AL  +G A E+
Sbjct: 230 CRNSMLAGYAKSYGVDHALELFESMPER----DVVSWNMMVSALSQSGRAREA 278



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 7/192 (3%)

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           ++ ALR+     A+   R +HG  V  GL   V +   L+  Y   G + DAR +   ++
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
           +  N I  N MM GYA+ G  S   ELF  +  R    D  S+  +++    +G   ++ 
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRR----DVTSWNTLMSGYYQSGRFLDAM 146

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP---FEPDAAVWRALLSF 380
           +    M+      P    + C + + G  G  E A ++   +    F+ D  V   ++  
Sbjct: 147 ESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDM 206

Query: 381 SAIHGKADMASK 392
               G  D ASK
Sbjct: 207 FVRCGAVDFASK 218


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 183/572 (31%), Positives = 313/572 (54%), Gaps = 31/572 (5%)

Query: 19  RIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS----PNIVSWTALIS 72
           RI+ AR L  K S  D   +N +I  YS++    + L+L+  + +    P+ +    ++S
Sbjct: 166 RIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLS 225

Query: 73  AHSNSPLSLNIFLSMLRHPTLSFLPN---------QRTLASLFKTCASLSHAFLFGLSLH 123
           A +++    N+      H    F+ +         Q +L +++  C ++  A      L 
Sbjct: 226 ACAHAG---NLSYGKAIH---QFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLP 279

Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
           S  + +S        +A++  Y++     +A+ +FD + E+D+VC+ AMI G+A++ + +
Sbjct: 280 SKHMVVS--------TAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPL 331

Query: 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243
           ++L +F +M+   +      +   + A A + A+ Q + IH +A  +G  R + +   LI
Sbjct: 332 EALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALI 391

Query: 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303
           D Y K G +  AR VF EN+   N I+W++M+  +A  GD  + + LFH ++ +   P+ 
Sbjct: 392 DMYAKCGNLVKAREVF-ENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNG 450

Query: 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
            +F+ VL A  +AGL  E +K+   M   +++ P  EHY C++    RA  L  A  +  
Sbjct: 451 VTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIE 510

Query: 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            MPF P+  +W +L+S    HG+ ++      RL+++ P  D A V+++N+ +   RWD+
Sbjct: 511 TMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDD 570

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
           V  VRK+MK + V KE   S IEV  +VHVF+  DR H+++++IY KL  ++ + + +GY
Sbjct: 571 VGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGY 630

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
            P    +L ++ + EK+E + +HSEKLAL +GL+ G  +   +RIVKNLRIC DCH   K
Sbjct: 631 TPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLI-GERKESCIRIVKNLRICEDCHSFMK 689

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            +S+V   EIV+RD  R+H F  G C+C D W
Sbjct: 690 LVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 174/386 (45%), Gaps = 38/386 (9%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQR-TLASLFK 107
           L Y+L LF+HIP+P       L+   S  P   N  LS+  H   +  P  R +   L K
Sbjct: 65  LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENT-LSLYLHLRRNGFPLDRFSFPPLLK 123

Query: 108 TCASLSHAFLFGLSLHSLSLKLSL-HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166
             + LS A   GL +H L+ K    H  PF  SAL+  Y+      +A+ +FD++  RDV
Sbjct: 124 AVSKLS-ALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDV 182

Query: 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH-- 224
           V +  MI G++QN+     L ++ +M++S        +   L A A    +   + IH  
Sbjct: 183 VTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQF 242

Query: 225 --------GHAVVSGL---------------------DRNVIVGTGLIDGYGKAGIVSDA 255
                   G  + + L                      ++++V T ++ GY K G+V DA
Sbjct: 243 IKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDA 302

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
           R +FD  +   + + W+AM++GYA+       L+LF+ ++ R   PD+ + L+V++A  N
Sbjct: 303 RFIFDRMVEK-DLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACAN 361

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
            G A    KWI     +      L     LI    + G L  A  +   MP   +   W 
Sbjct: 362 VG-ALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMP-RKNVISWS 419

Query: 376 ALLSFSAIHGKADMASKMGKRLIDIN 401
           ++++  A+HG AD A  +  R+ + N
Sbjct: 420 SMINAFAMHGDADSAIALFHRMKEQN 445


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/555 (32%), Positives = 307/555 (55%), Gaps = 14/555 (2%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SN 76
           ++H   LK    +D  + N LI  YSK   L  +  +F+ +   ++VSW ++I+A+  +N
Sbjct: 243 LIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNN 302

Query: 77  SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
            P +   F   ++   +   P+  T+ SL    + LS   +   S+    ++    DK  
Sbjct: 303 DPSTALRFFKGMQLGGIR--PDLLTVVSLTSIFSQLSDQRI-SRSILGFVIRREWLDKDV 359

Query: 137 C-GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN---SRLVDSLSVFADM 192
             G+ALV+ Y++    + A  VFD++  +D + +  ++ G+ QN   S  +D+ ++  + 
Sbjct: 360 VIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEEC 419

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
           R +      +     + A + + A++Q   IH   + + L  +V V T LID YGK G +
Sbjct: 420 RDTIPNQGTWV--SIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRL 477

Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
            DA  +F E +    S+ WNA++A     G     L+LF  +       D  +F+++L+A
Sbjct: 478 EDAMSLFYE-IPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSA 536

Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
             ++GL  E +K  + M+  Y ++P L+HY C++  +GRAG LE A  +   MP +PDA+
Sbjct: 537 CSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDAS 596

Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
           +W ALLS   I+G A++ +    RL++++  +   YV+++N+ +   +W+ V +VR + +
Sbjct: 597 IWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLAR 656

Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
           DR +RK  G S + V  K  VF  G++ H +  +IY +L  L  + + LGYVP +  +  
Sbjct: 657 DRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQ 716

Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
           ++ + EK + L  HSE+LA+AFG++S  PR   +RI KNLR+C DCH + KYISR+ ERE
Sbjct: 717 DIEEDEKEQILNSHSERLAIAFGIISTPPRSP-IRIFKNLRVCGDCHNATKYISRISERE 775

Query: 553 IVVRDVNRYHRFLNG 567
           IVVRD NR+H F +G
Sbjct: 776 IVVRDSNRFHHFKDG 790



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 160/360 (44%), Gaps = 14/360 (3%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH------SNSPLSLNIFLSMLRH 90
             LI  Y     +S S   F++I   NI SW ++ISA+        +   +N   SM   
Sbjct: 58  TKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGG 117

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
             L   P+  T   + K C SL      G  +H    K+   D  F  ++LVH YSR+  
Sbjct: 118 GHLR--PDFYTFPPILKACVSLVD----GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGV 171

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
            D A KVF ++  +DV  + AMI GF QN     +L V   M+   V      V+  L  
Sbjct: 172 LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPV 231

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
            A+   +    +IH H +  GLD +V V   LI+ Y K G + DA+ VFD+ + V + ++
Sbjct: 232 CAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQ-MEVRDLVS 290

Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
           WN+++A Y Q  D ST L  F  +++ G  PD  + +++ +          S   +  + 
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
            R  L+  +     L++   + G +  A  +   +P   D   W  L++    +G A  A
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP-RKDTISWNTLVTGYTQNGLASEA 409


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/525 (33%), Positives = 289/525 (55%), Gaps = 36/525 (6%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           +LF+ +   +++SW ++IS + ++ LS   L++F  ML       L     LA++     
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQML------LLGINTDLATM----- 254

Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
                         +S++L+L++       L+  YS+  + ++A +VF+ + ER VV + 
Sbjct: 255 --------------VSVELTLNN------CLLDMYSKSGNLNSAIQVFETMGERSVVSWT 294

Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
           +MI G+A+      S+ +F +M   D+      ++  L A A LAA+E+ + IHGH + +
Sbjct: 295 SMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRN 354

Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
           G   +  V   L+D Y K G +  AR +FD  +   + ++W  M+AGY   G  S  +  
Sbjct: 355 GFSLDRHVANALVDMYLKCGALGLARLLFDM-IPEKDLVSWTVMIAGYGMHGYGSEAIAA 413

Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
           F+ +   G  PDE SF+++L A  ++GL  E   +   M+    +EP  EHY C++  + 
Sbjct: 414 FNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLA 473

Query: 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           RAG L  A +    MP EPDA +W ALL    I+    +A K+ + + ++ P +   YV+
Sbjct: 474 RAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVL 533

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
           +AN+ +   +W+EV ++R+ +  R +RK  G SWIE+KGKVH+F+ GD  H     I   
Sbjct: 534 LANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELL 593

Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
           L +     +  G+ P     L    D EK  AL  HSEK+A+AFG++S  P GKT+R+ K
Sbjct: 594 LKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILS-LPPGKTVRVTK 652

Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           NLR+C DCHE  K++S++V+R+I++RD NR+H F +GSC+C   W
Sbjct: 653 NLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 142/312 (45%), Gaps = 27/312 (8%)

Query: 34  SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRH 90
           ++ N L+  YSKS  L+ ++++F  +   ++VSWT++I+ ++    S +S+ +F  M + 
Sbjct: 260 TLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKE 319

Query: 91  PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
                 PN  T+A +   CASL+ A   G  +H   L+          +ALV  Y +  +
Sbjct: 320 ---DLFPNSITMACILPACASLA-ALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGA 375

Query: 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210
              A+ +FD I E+D+V +  MI G+  +    ++++ F +MR+S +          L A
Sbjct: 376 LGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYA 435

Query: 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYGKAGIVSDARRVFDENLS 264
            +    +++     G    + +  N  +         ++D   +AG +S A +       
Sbjct: 436 CSHSGLLDE-----GWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPI 490

Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
             ++  W A++ G     D     ++  H+ E+    P+   +  +L     A +  E+E
Sbjct: 491 EPDATIWGALLCGCRIYHDVKLAEKVAEHVFELE---PENTGYYVLL-----ANIYAEAE 542

Query: 324 KWIERMKVRYKL 335
           KW E  K+R ++
Sbjct: 543 KWEEVKKLRERI 554



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 43/355 (12%)

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
           RT  S+ + CA L  +   G  +HS+     +      GS LV  Y         +++FD
Sbjct: 102 RTYCSVLQLCADLK-SIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFD 160

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
           ++    V  +  ++ G+A+     +SLS+F  MR   +      V  A +   EL   + 
Sbjct: 161 KVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR----VESARKLFDELGDRD- 215

Query: 220 CRVIHGHAVVSGLDRNVIVGTG-----------------------------LIDGYGKAG 250
             VI  ++++SG   N +   G                             L+D Y K+G
Sbjct: 216 --VISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSG 273

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
            ++ A +VF E +   + ++W +M+AGYA++G     + LFH +E     P+  +   +L
Sbjct: 274 NLNSAIQVF-ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACIL 332

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
            A C +  A E  + I    +R            L+    + G L  A R+   M  E D
Sbjct: 333 PA-CASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLA-RLLFDMIPEKD 390

Query: 371 AAVWRALLSFSAIHGKAD--MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
              W  +++   +HG     +A+    R   I P D+ +++ +    S  G  DE
Sbjct: 391 LVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEP-DEVSFISILYACSHSGLLDE 444


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 192/594 (32%), Positives = 298/594 (50%), Gaps = 71/594 (11%)

Query: 38  NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLR----- 89
           +LI  YSK   L  +++LF  +   ++V W+++I+A   H     +L IF  M++     
Sbjct: 378 SLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGI 437

Query: 90  ------------HPTLSFLPNQRTLAS-----------------------LFKTCA---- 110
                        P L+      TLA+                       +F T      
Sbjct: 438 TSCYQISMQPQVQPPLAI--TSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAA 495

Query: 111 --SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVC 168
             S S+ F +GL   S  L           +     Y  F   D A  VF++I       
Sbjct: 496 DMSKSNIFAYGLQYDSRIL-----------TKFAIMYVSFNRIDAASIVFEDIPNPCSFL 544

Query: 169 YGAMIVGFAQNSRLVDSLSVFADMR-------SSDVGSTMYCVSGALRAAAELAAMEQCR 221
           +  MI GFA + R + SL +++ M        +S V      +   L A   L A+ +  
Sbjct: 545 WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGE 604

Query: 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281
             H + + +G + +++V T ++D Y K G +  AR +FDE     + + W+AM+A Y   
Sbjct: 605 WFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMIASYGIH 663

Query: 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341
           G     ++LF  +   G  P   +F  VL+A  ++GL  E + + + M   + +   L +
Sbjct: 664 GHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSN 723

Query: 342 YTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
           Y C++  +GRAG+L +A  +   MP EPDA++W +LL    IH   D+A K+   L  ++
Sbjct: 724 YACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLD 783

Query: 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMH 461
           P     +V+++N+ +   RW+EV +VRK+M  R   K  G S +E   +VH F  GDR H
Sbjct: 784 PVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSH 843

Query: 462 ERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAP 521
            + E +Y KL EL    + LGYVP+ D +LH++ +  K  AL YHSE+LA+AFGL++ +P
Sbjct: 844 PQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSP 903

Query: 522 RGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            G TLRI KNLRIC DCH + K IS++V R I+VRD++R+HRF +G C+CGD W
Sbjct: 904 -GTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 43/264 (16%)

Query: 31  ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSM 87
            D  + N+L+  Y+K+     +  LF+ +P  +++SW+ +I+ ++N+  +   LN+F  M
Sbjct: 204 GDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM 263

Query: 88  LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
           +      F PN  T+ S  + CA                                     
Sbjct: 264 IEK---RFEPNSVTVVSALQACAVS----------------------------------- 285

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
            R+ +  KK+      +DVV + A++ G+AQN     S+ VF +M S  +      V   
Sbjct: 286 -RNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKI 344

Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
           L A++EL   +Q   +HG+ V SG + NV VG  LI+ Y K G + DA ++F + + V +
Sbjct: 345 LAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLF-KGMIVRD 403

Query: 268 SIAWNAMMAGYAQQGDQSTVLELF 291
            + W++M+A Y   G     LE+F
Sbjct: 404 VVIWSSMIAAYGIHGRGGEALEIF 427



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 182/443 (41%), Gaps = 53/443 (11%)

Query: 10  QPQNTSTDPRIVHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWT 68
           Q  N       +H++  K+     + +   L + Y+K   L  + ++F+  P PN+  W 
Sbjct: 12  QACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWN 71

Query: 69  ALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL 125
           + + ++        +L +F  M+   T    P+  T+    K CA L    L G  +H  
Sbjct: 72  STLRSYCREKQWEETLRLFHLMI--CTAGEAPDNFTIPIALKACAGLRMLEL-GKVIHGF 128

Query: 126 SLKL-SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
           + K   +    F GSALV  YS+      A KVF+E +  D V + +M+ G+ QN+   +
Sbjct: 129 AKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEE 188

Query: 185 SLSVFADMRSSDVGSTMYCVSGAL---RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
           +L++F+ M   D      C  G L    +   L A   C  I  +      +++VI  + 
Sbjct: 189 ALALFSQMVMMD------CFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 242

Query: 242 LIDGYGKAGIVSDARRVFDE---------NLSVLNS------------------------ 268
           +I  Y      ++A  +F E         +++V+++                        
Sbjct: 243 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKD 302

Query: 269 -IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
            ++W A+++GYAQ G     + +F  +   G  PD  + + +L A    G+  ++   + 
Sbjct: 303 VVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA-LCLH 361

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
              VR      +     LI    + G L DA ++   M    D  +W ++++   IHG+ 
Sbjct: 362 GYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRG 420

Query: 388 DMASKMGKRLIDINPYDDSAYVI 410
             A ++  ++I +     S Y I
Sbjct: 421 GEALEIFDQMIQVMQGITSCYQI 443



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 13/204 (6%)

Query: 98  NQRTLASLFKTCA---SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
           +++ L  LF+ C    S+S        LHS   K  +    F  + L   Y++  S   A
Sbjct: 3   SRQVLVDLFQACNNGRSVSQ-------LHSQVFKTGILHDTFFATKLNSLYAKCASLQAA 55

Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR-SSDVGSTMYCVSGALRAAAE 213
           +KVFDE    +V  + + +  + +  +  ++L +F  M  ++      + +  AL+A A 
Sbjct: 56  RKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAG 115

Query: 214 LAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           L  +E  +VIHG A  +  +  ++ VG+ L++ Y K G + +A +VF+E     +++ W 
Sbjct: 116 LRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEE-FQRPDTVLWT 174

Query: 273 AMMAGYAQQGDQSTVLELFHLLEM 296
           +M+ GY Q  D    L LF  + M
Sbjct: 175 SMVTGYQQNNDPEEALALFSQMVM 198



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 102/249 (40%), Gaps = 20/249 (8%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
           Q D  I       Y   N +  +  +F  IP+P    W  +I   +       SL ++  
Sbjct: 508 QYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSK 567

Query: 87  M----LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142
           M    L+      +PN+ ++ S+   C +L  A   G   HS  ++          +A++
Sbjct: 568 MMEKGLKPDNSGVIPNRVSILSVLLACGNLG-ALRKGEWFHSYVIQTGFEFDILVATAIM 626

Query: 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
             YS+  S D A+ +FDE   +D+VC+ AMI  +  +     ++ +F  M  + V  +  
Sbjct: 627 DMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHV 686

Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL------IDGYGKAGIVSDAR 256
             +  L A +    +E+     G      +    ++   L      +D  G+AG +S+A 
Sbjct: 687 TFTCVLSACSHSGLLEE-----GKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAV 741

Query: 257 RVFDENLSV 265
            +  EN+ V
Sbjct: 742 DLI-ENMPV 749


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 180/577 (31%), Positives = 300/577 (51%), Gaps = 45/577 (7%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSP--NIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
           N++I  + +   +  + R+FN +     ++VSW+A++S +  + +     +  +      
Sbjct: 206 NSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSG 265

Query: 95  FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
              ++  + S    C+ + +  + G  +H L++K+ + D     +AL+H YS      +A
Sbjct: 266 VAVDEVVVVSALSACSRVLNVEM-GRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDA 324

Query: 155 KKVFDE--------------------------------IRERDVVCYGAMIVGFAQNSRL 182
           +++FD+                                + E+DVV + AMI G+AQ+   
Sbjct: 325 RRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECF 384

Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
            ++L++F +M+   V      +  A+ A   LA ++  + IH +   + L  NVI+ T L
Sbjct: 385 SEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTL 444

Query: 243 IDGYGKAGIVSDARRVF----DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           ID Y K G V +A  VF    ++ +S      WNA++ G A  G     L +F  ++  G
Sbjct: 445 IDMYMKCGCVENALEVFYAMEEKGVST-----WNAVILGLAMNGSVEQSLNMFADMKKTG 499

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
             P+E +F+ VL A  + GL  +   +   M   +K+E  ++HY C++  +GRAG L++A
Sbjct: 500 TVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEA 559

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
           E +  +MP  PD A W ALL     H   +M  ++G++LI + P  D  +V+++N+ +  
Sbjct: 560 EELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASK 619

Query: 419 GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC 478
           G W  V E+R +M    V K  G S IE  G VH FLAGD+ H +  DI   L  +  + 
Sbjct: 620 GNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKL 679

Query: 479 ERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDC 538
           +  GYVP   E+  ++ + EK  AL+ HSEKLA+AFGL++ +P    +R+ KNLRIC DC
Sbjct: 680 KIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPP-TPIRVTKNLRICNDC 738

Query: 539 HESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           H   K IS+  +R+IVVRD +R+H F +G+C+C D W
Sbjct: 739 HTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 165/405 (40%), Gaps = 101/405 (24%)

Query: 33  RSIYNNLITN-YSKSNLLS------------YSLRLFNHIPSPNIVSWTALISAH---SN 76
           ++I   LIT+ Y+ S L++            YSLR+FNH+ +PN  +W  ++ AH    N
Sbjct: 25  QTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAHLYLQN 84

Query: 77  SP----LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
           SP    L   +FL+   H      P+  T   L + CA+    F  G  LH+ ++     
Sbjct: 85  SPHQALLHYKLFLA--SHAK----PDSYTYPILLQCCAARVSEFE-GRQLHAHAVSSGFD 137

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              +  + L++ Y+   S  +A++VF+E    D+V +  ++ G+ Q   + ++  VF  M
Sbjct: 138 GDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGM 197

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
                                                   +RN I    +I  +G+ G V
Sbjct: 198 P---------------------------------------ERNTIASNSMIALFGRKGCV 218

Query: 253 SDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
             ARR+F+       + ++W+AM++ Y Q       L LF  ++  G A DE   ++ L+
Sbjct: 219 EKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALS 278

Query: 312 ALCNAGLAGESEKWIERMKVRYKLEP--------------------------------GL 339
           A C+  L  E  +W+  + V+  +E                                  L
Sbjct: 279 A-CSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDL 337

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH 384
             +  +IS   R G ++DAE +  +MP E D   W A++S  A H
Sbjct: 338 ISWNSMISGYLRCGSIQDAEMLFYSMP-EKDVVSWSAMISGYAQH 381



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 114/257 (44%), Gaps = 16/257 (6%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPT 92
           +N++I+ Y +   +  +  LF  +P  ++VSW+A+IS ++       +L +F  M  H  
Sbjct: 340 WNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLH-- 397

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
               P++  L S    C  L+     G  +H+   +  L       + L+  Y +    +
Sbjct: 398 -GVRPDETALVSAISACTHLA-TLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVE 455

Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           NA +VF  + E+ V  + A+I+G A N  +  SL++FADM+ +          G L A  
Sbjct: 456 NALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACR 515

Query: 213 ELAAMEQCR-----VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
            +  +   R     +IH H +    + N+     ++D  G+AG++ +A  + D      +
Sbjct: 516 HMGLVNDGRHYFNSMIHEHKI----EANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPD 571

Query: 268 SIAWNAMMAGYAQQGDQ 284
              W A++    +  D 
Sbjct: 572 VATWGALLGACRKHRDN 588



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 11/196 (5%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS--PDN-AKKV 157
           TL SL ++C    H       L S ++   L   P+  S L++F S   +  P + + ++
Sbjct: 5   TLDSLLQSCKCPRHF----KQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRI 60

Query: 158 FDEIRERDVVCYGAMIVG--FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           F+ +R  +   +  ++    + QNS    +L  +    +S      Y     L+  A   
Sbjct: 61  FNHLRNPNTFTWNTIMRAHLYLQNSPH-QALLHYKLFLASHAKPDSYTYPILLQCCAARV 119

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
           +  + R +H HAV SG D +V V   L++ Y   G V  ARRVF+E+  VL+ ++WN ++
Sbjct: 120 SEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEES-PVLDLVSWNTLL 178

Query: 276 AGYAQQGDQSTVLELF 291
           AGY Q G+      +F
Sbjct: 179 AGYVQAGEVEEAERVF 194


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 188/572 (32%), Positives = 305/572 (53%), Gaps = 20/572 (3%)

Query: 16  TDPRIVHARALKSS--QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA 73
           +  R +HAR L     Q + ++ N++IT Y K      ++ +F  +P  + VSW A+I+A
Sbjct: 378 SQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINA 437

Query: 74  H-SNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
              NS    +L +F  M      S   N+ TL SL + C  L    L        +    
Sbjct: 438 SVGNSKFQDALELFHGMELEGLRS---NEFTLLSLLEACGGLEDLKLARQIHARAAAGGF 494

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD--SLSV 188
             +    G+++V+ Y+R  S  +AKK FD + E+ +V +  ++  +AQ+       +   
Sbjct: 495 GGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKF 554

Query: 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYG 247
           F +M +  +         AL A A +A +E  R +H  A  SG ++ ++++G  +I+ YG
Sbjct: 555 FQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYG 614

Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
           K G  SDA+ VFD+ +     I+WN+++  YA  G     L     + ++GF PD  + +
Sbjct: 615 KCGSPSDAKLVFDQ-MPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSV 673

Query: 308 AVLTALCNAGLAGESEKWIERMKVRYK---LEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
           ++L  L +AGL    E+ +E  +   +   LEP      CL+  + R G L+ AE + +A
Sbjct: 674 SILYGLSHAGLL---ERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILA 730

Query: 365 MP-FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
            P  + D   W  LL+    +G      +  +R+ ++ P    ++V++AN+ + VGRW +
Sbjct: 731 SPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSD 790

Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
            + +RK+M+   V+KE G SWIE+ G VH F++G+  H +  +I   L +L       GY
Sbjct: 791 ASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEDLEKLTLRMREAGY 850

Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
           VP    ++H+V + +K E L  HSE+LA+ FGL+S  P G+T+R+VKNLR+C DCH + K
Sbjct: 851 VPDTTNVVHDVEEGDKEEILSRHSERLAIVFGLMSTRP-GETIRVVKNLRVCSDCHAATK 909

Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            IS VV REIVVRD +R+H F +G C+CGD W
Sbjct: 910 IISSVVGREIVVRDSSRFHHFKHGQCSCGDFW 941



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 172/369 (46%), Gaps = 4/369 (1%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H+  + S   ++  I N+L+  Y K   +  + ++F+ +   ++VSWTA+++ ++ +
Sbjct: 78  RQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQN 137

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                    + R       PNQ T  ++   CA L      G  +H   +   L      
Sbjct: 138 GCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKL-RLLDLGRKIHHRIINEGLEPDGIL 196

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           G+ALVH Y    S D+ K VF  + +  V+ +  MI G +QN +  + L VF  M    V
Sbjct: 197 GNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGV 256

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
            +        +     L A+++  +I    + S    + ++ T LI  YG+ GI+  A+ 
Sbjct: 257 KANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKG 316

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +  E++   + +AWNAM+   AQ GD    + L   ++M GF  ++ ++L+VL A  N  
Sbjct: 317 LL-EHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLE 375

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
              +  +   R+ +   L+  +     +I+  G+ G+ E A  +  AMP + D + W A+
Sbjct: 376 ALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVS-WNAV 434

Query: 378 LSFSAIHGK 386
           ++ S  + K
Sbjct: 435 INASVGNSK 443



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 157/346 (45%), Gaps = 10/346 (2%)

Query: 43  YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP---LSLNIFLSMLRHPTLSFLPNQ 99
           Y K   ++ +L +F+ I + N+ SWT +++A+S +     +L +F  M    T    P++
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTR---PDK 58

Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
                    CA+ S     G  +HS  +   L       ++LV+ Y + +    A+KVFD
Sbjct: 59  VVFVIALDACAA-SGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFD 117

Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
            +  RDVV + AM+  +AQN     +L   + M +  V          +   A+L  ++ 
Sbjct: 118 GMLLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDL 177

Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
            R IH   +  GL+ + I+G  L+  YG  G   D + VF   +   + + W  M+AG +
Sbjct: 178 GRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFS-RMGQSSVLLWTTMIAGCS 236

Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
           Q G     L +F  +++ G   +E ++++++    N     E E  I+   +        
Sbjct: 237 QNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEM-IDARILESPFCSST 295

Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
              T LIS  G+ G L+ A+ +   M ++ D   W A+++  A +G
Sbjct: 296 LLATSLISLYGQCGILDRAKGLLEHM-YQRDVVAWNAMVTACAQNG 340



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 132/301 (43%), Gaps = 14/301 (4%)

Query: 19  RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +H R +    + D  + N L+  Y           +F+ +   +++ WT +I+  S +
Sbjct: 179 RKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQN 238

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
                  L   +        N+ T  S+ + C +L  A   G  + +  L     + PFC
Sbjct: 239 GQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLD-AVKEGEMIDARIL-----ESPFC 292

Query: 138 GS-----ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            S     +L+  Y +    D AK + + + +RDVV + AM+   AQN    +++ +   M
Sbjct: 293 SSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRM 352

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGI 251
                G+        L A A L A+ Q R IH   ++ G L R V VG  +I  YGK G 
Sbjct: 353 DMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQ 412

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
              A  VF E +   + ++WNA++            LELFH +E+ G   +E++ L++L 
Sbjct: 413 TEAAMSVF-EAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLE 471

Query: 312 A 312
           A
Sbjct: 472 A 472


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/587 (31%), Positives = 319/587 (54%), Gaps = 32/587 (5%)

Query: 14  TSTDPRI--VHARALKSSQADRS----IYNNLITNYSKSNL--LSYSLRLFNHIPSPNIV 65
           T T P++  +HA+ L++  ++      +Y N++ +YS      L+Y+ R+F+H P+PN  
Sbjct: 32  TITMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNSF 91

Query: 66  SWTALISAHSNSP------LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119
            W  LI  ++ S        ++ ++ +M+     + +P+  T   + K CA  + +   G
Sbjct: 92  MWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACA-YTFSLCEG 150

Query: 120 LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179
             +H+  LK       +  ++LVHFY+     D A+K+F ++ ER+ V +  MI  +A+ 
Sbjct: 151 KQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYAKG 210

Query: 180 SRLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN--- 235
                +L +F +M R  D     Y +   + A A L A+     +H + ++   D+N   
Sbjct: 211 GIFDTALRMFGEMQRVHDPDG--YTMQSVISACAGLGALSLGLWVHAY-ILKKCDKNMVD 267

Query: 236 -VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HL 293
            V+V T L+D Y K+G +  A++VF E+++  +  AWN+M+ G A  G+    L  +  +
Sbjct: 268 DVLVNTCLVDMYCKSGELEIAKQVF-ESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRM 326

Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
           +++    P+  +F+ VL+A  + G+  E     + M   Y +EP LEHY CL+    RAG
Sbjct: 327 VKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARAG 386

Query: 354 RLEDAERIAMAMPFEPDAAVWRALL-SFSAIHGKADMASKMGKRLIDI--NPYDDSAYVI 410
           R+ +A  +   M  +PDA +WR+LL +    +   +++ +M K++ +   +      YV+
Sbjct: 387 RINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYVL 446

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
           ++ V +   RW++V  +RK+M ++ V KE G S IE+ G VH F AGD  H ++E+IY  
Sbjct: 447 LSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYKV 506

Query: 471 LAELMEECERLGYVPVWD--EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRI 528
           + E+ E+ E +GY+P +    M+  V D  K   L  HSE+LA+AFG+++  P    +R+
Sbjct: 507 VTEIEEKLESIGYLPDYSGAPMVDEVNDG-KLNTLRLHSERLAIAFGILNSKP-DVPIRV 564

Query: 529 VKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
            KNLR+C DCH   K ISR+   EI+VRD  R+H F +G+C+C D W
Sbjct: 565 FKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 180/561 (32%), Positives = 301/561 (53%), Gaps = 41/561 (7%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSML 88
           D   +  LI+  +K  +L  +  L +  P  +++SWT+LI+A+S +  +   +  F +ML
Sbjct: 172 DAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTML 231

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL----------SLKLSLHD----- 133
            H      P++ T+ ++   CA L    L G SLH L          +L ++L D     
Sbjct: 232 SH---GIAPDEVTVIAVLSACAKLKDLEL-GRSLHLLVEEKGMPTSENLVVALIDMYAKC 287

Query: 134 -----------------KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
                            +P   +A++  Y +    D A+ +FDE+  RD++ + +M+ G+
Sbjct: 288 GDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGY 347

Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
             + +L ++L +F  MR  D+    + V   L A A L A++Q R +H       ++ ++
Sbjct: 348 IHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADI 407

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            +GT L+D Y K G V +A  VF + +   +   W AM+AG A  G     LE F+ +  
Sbjct: 408 YLGTALLDMYMKCGRVDEATIVF-QRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRC 466

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
            GF P+  S++AVLTA  ++ L  E   + + M++ Y + P +EHY C+I  +GR+G L+
Sbjct: 467 DGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 526

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A  +   MP +P+A +W ++LS   +H   D+A    + L+ + P +D  YV + N+  
Sbjct: 527 EAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYI 586

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
              +W+  +++R +M++R+V+K  G S I V G+VH F+  D+ H R  +I   L E+  
Sbjct: 587 DSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISH 646

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
             + LGY P+  ++  +V + EK +AL  HSEKLA+AFGL++ AP    + I KNLR+C 
Sbjct: 647 RLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAP-NLPVHIRKNLRVCE 705

Query: 537 DCHESFKYISRVVEREIVVRD 557
           DCH + K ISR+  REI+VRD
Sbjct: 706 DCHSAIKLISRLWNREIIVRD 726



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 187/468 (39%), Gaps = 71/468 (15%)

Query: 9   PQPQNTSTDPRIV------HARALKSSQ------ADRSIYNNLITNYSKSNL-LSYSLRL 55
           P P  T   PR V      HAR   S        + R + N+L+       L L Y+L L
Sbjct: 3   PAPWPT---PRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHL 59

Query: 56  FNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL--S 113
           F+ +P    +  TAL +           FL   R       P+  T   LFK  +S    
Sbjct: 60  FDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRP 119

Query: 114 HAFLFGLSLHSLSLKLSLHDK-PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM 172
           H+ L    LH+  L+  L    PF  ++L+H Y R     +A++ FDEI  +D V +  +
Sbjct: 120 HSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTML 179

Query: 173 IVGFAQNSRLVDS-------------------------------LSVFADMRSSDVGSTM 201
           I G A+   L D+                               +  F  M S  +    
Sbjct: 180 ISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDE 239

Query: 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261
             V   L A A+L  +E  R +H      G+  +  +   LID Y K G    A++VFD 
Sbjct: 240 VTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDA 299

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
                   +WNA++ GY + G       LF  +E+R    D  +F +++T   ++G   E
Sbjct: 300 LGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVR----DIITFNSMMTGYIHSGQLRE 355

Query: 322 SEKWIERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMAMP---FEPDAAVWRA 376
           +      M+ R+ L   ++++T   L++A    G L+    +   +     E D  +  A
Sbjct: 356 ALLLFMSMR-RHDLR--VDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTA 412

Query: 377 LLSFSAIHGKADMAS----KMGKRLIDINPYDDSAYVIVANVLSGVGR 420
           LL      G+ D A+    +MGKR  D++ +     +I     +G+G+
Sbjct: 413 LLDMYMKCGRVDEATIVFQRMGKR--DVHTW---TAMIAGLAFNGMGK 455


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/520 (34%), Positives = 289/520 (55%), Gaps = 10/520 (1%)

Query: 55  LFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           +F H+ SPNI +  A + A   +S+   ++  F   +  P     P++ T  S+ K CA 
Sbjct: 46  IFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPN-PDEFTFTSVLKACAG 104

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE--IRERDVVCY 169
           L+H  + G  +H++  K       F  ++L+  Y +      A+ +FDE  +R+R+VVC+
Sbjct: 105 LAHV-VNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCW 163

Query: 170 GAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
            AMI G+AQN +  D++ VF  M+    V      +   L A A L A++  + I G   
Sbjct: 164 NAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFIS 223

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
              +   + +G  L D Y K G +++ARRVF++ +   + I+W+ ++ G A  G      
Sbjct: 224 RREMALGLFLGNALADMYAKCGCITEARRVFNK-MEERDVISWSIIICGLAMYGHADEAF 282

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
             F+ +   G  P++  F+ +LTA  +AGL  +       M   Y + P +EHY C++  
Sbjct: 283 GCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDL 342

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
           + RAG L+ AE +  +MP +P+  +W ALL    I+  +    ++ + +++++     +Y
Sbjct: 343 LSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSY 402

Query: 409 VIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIY 468
           V +ANV S +GR D+ A+ R  M++  V K  G SWIEV   VH F  GD  H  +  IY
Sbjct: 403 VYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIY 462

Query: 469 TKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRI 528
           + + ELM + +  GY P  D ++H++ + EK +AL  HSEKLA+AFGL+S +  G T+R+
Sbjct: 463 SMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTS-EGTTIRV 521

Query: 529 VKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGS 568
           VKNLRIC DCH++ K IS +V+REI+VRD +R+H F +G+
Sbjct: 522 VKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDGA 561


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/554 (32%), Positives = 304/554 (54%), Gaps = 35/554 (6%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPT 92
           +  ++T Y+K   L  + R F+ +P  ++VSW A++S ++ + L+   L +F  M+    
Sbjct: 197 WTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMV---N 253

Query: 93  LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP-----FCGSALVHFYSR 147
               P++ T  ++   C+S     L      + SL  +LH K      F  +AL+  Y++
Sbjct: 254 AGIEPDETTWVTVISACSSRGDPCL------AASLVRTLHQKRIQLNCFVRTALLDMYAK 307

Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSG 206
           F   D+A+K+F+ +  R+VV + +MI G+AQN +   ++ +F +M  +  +      +  
Sbjct: 308 FGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVS 367

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV-----GTGLIDGYGKAGIVSDARRVFDE 261
            + A   L A+E      G+ VV  L  N I         +I  Y + G + DA+RVF E
Sbjct: 368 VISACGHLGALEL-----GNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQE 422

Query: 262 NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321
            ++  + +++N +++G+A  G     + L   ++  G  PD  +F+ VLTA  +AGL  E
Sbjct: 423 -MATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEE 481

Query: 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381
             K  E +K     +P ++HY C++  +GR G LEDA+R    MP EP A V+ +LL+ S
Sbjct: 482 GRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNAS 536

Query: 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441
            IH + ++      +L ++ P +   +++++N+ +  GRW +V  +R+ MK   V+K  G
Sbjct: 537 RIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTG 596

Query: 442 RSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE 501
            SW+E  GK+H F+  DR HER++DIY  L EL ++    GY+     +L +V + EK E
Sbjct: 597 WSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEE 656

Query: 502 ALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561
            +  HSEKLA+ + L+  +  G  +R+VKNLR+C DCH + K IS++  R I+VRD NR+
Sbjct: 657 IVGTHSEKLAICYALLV-SEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRF 715

Query: 562 HRFLNGSCTCGDLW 575
           H F +G C+C D W
Sbjct: 716 HCFNDGLCSCKDYW 729



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 115/485 (23%), Positives = 200/485 (41%), Gaps = 81/485 (16%)

Query: 19  RIVHARALKSSQADRSIYNNLITNYSKSNLLS---YSLRLFNHIPSPNIVSWTALISAHS 75
           R +HA+ + +S    + +  L+ N+  + L +   Y+  LFN   +PN+  +T+++  +S
Sbjct: 18  RQLHAQIIHNSLHHHNYWVALLINHC-TRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYS 76

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
           +      + L   +       P+      L K+  +       G+  H+  LKL      
Sbjct: 77  HLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT------GGIGFHAHVLKLGHGSDA 130

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEI---------------------------------R 162
           F  +A++  Y+R     +A+KVFDEI                                  
Sbjct: 131 FVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP 190

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG---------ALRAAAE 213
           ER+V+ + AM+ G+A+   L  +   F  M    V S    +SG         ALR   E
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDE 250

Query: 214 L-------------AAMEQCRVIHGHAVVSGLDR---------NVIVGTGLIDGYGKAGI 251
           +               +  C       + + L R         N  V T L+D Y K G 
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGD 310

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVL 310
           +  AR++F+  +   N + WN+M+AGYAQ G  +  +ELF  ++  +   PDE + ++V+
Sbjct: 311 LDSARKLFN-TMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVI 369

Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
           +A  + G A E   W+ R     +++  +  +  +I    R G +EDA+R+   M    D
Sbjct: 370 SACGHLG-ALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR-D 427

Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVR 428
              +  L+S  A HG    A  +   + +  I P D   ++ V    S  G  +E  +V 
Sbjct: 428 VVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP-DRVTFIGVLTACSHAGLLEEGRKVF 486

Query: 429 KVMKD 433
           + +KD
Sbjct: 487 ESIKD 491



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 118/243 (48%), Gaps = 22/243 (9%)

Query: 27  KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
           K  Q +  +   L+  Y+K   L  + +LFN +P  N+V+W ++I+ ++    S +++ +
Sbjct: 289 KRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIEL 348

Query: 84  FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG------LSLHSLSLKLSLHDKPFC 137
           F  M+    L+  P++ T+ S+   C  L  A   G      L+ + + L +S H+    
Sbjct: 349 FKEMITAKKLT--PDEVTMVSVISACGHLG-ALELGNWVVRFLTENQIKLSISGHN---- 401

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
             A++  YSR  S ++AK+VF E+  RDVV Y  +I GFA +   V+++++ + M+   +
Sbjct: 402 --AMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGI 459

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                   G L A +    +E+ R +        +D        ++D  G+ G + DA+R
Sbjct: 460 EPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYAC----MVDLLGRVGELEDAKR 515

Query: 258 VFD 260
             +
Sbjct: 516 TME 518


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/484 (36%), Positives = 277/484 (57%), Gaps = 21/484 (4%)

Query: 109 CASLSHAFLFGLSLHSLSLKLSLHDKP----FCGSA---------LVHFYSRFRSPDNAK 155
           C +L+H  +   SL  L   L L D+     + G A         +V  Y +      A+
Sbjct: 107 CGALAHPVVTN-SLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
           +VF  + ER++V + AM+    +     ++L VF  M   +    +  +   L+A A L 
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLG 225

Query: 216 AMEQCRVIHGH---AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           A+E+ R +H +       G   N+++ T L+D Y K G + DA +VFD  +   + + WN
Sbjct: 226 AVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFD-GVHRRDVVLWN 284

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
           AM+ G A  G     LELF  +  +GF P+E +F+AVL A  + G   E ++  + M+  
Sbjct: 285 AMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ-D 343

Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
           Y ++P  EHY CL   +GRAG +E+AE + + MP EP A+ W AL+S   +H   ++  +
Sbjct: 344 YGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGER 403

Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
           +GKRLI++ PYD   YV++ N+ +  GRW+E   +R++M+DR  +KE G S+IE+ G VH
Sbjct: 404 VGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVH 463

Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKRE-ALWYHSEKLA 511
            F++GD  H  T  IY  L ++    + +GYV    +++ ++ D E +  AL YHSE+LA
Sbjct: 464 EFISGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLA 523

Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
           LAFG+++  P+G  +RIVKNLR+CRDCH   K +S++ EREI+VRD +R+H F +G C+C
Sbjct: 524 LAFGILN-IPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSC 582

Query: 572 GDLW 575
            D W
Sbjct: 583 NDYW 586



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 130/327 (39%), Gaps = 31/327 (9%)

Query: 24  RALKSSQA--DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---P 78
           R L S  A  D   +N +++ Y K   L  +  +F  +P  N+VSW+A++ A   +    
Sbjct: 134 RVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFG 193

Query: 79  LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS--------HAFLFGLSLHSLSLKLS 130
            +L +F  M+R     F P+   L S+ K CA L         H +L   S       L 
Sbjct: 194 EALWVFDRMMRE---EFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLM 250

Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
           L       +ALV  Y +    ++A +VFD +  RDVV + AMI G A N     +L +F 
Sbjct: 251 LE------TALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFR 304

Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
            M               L A      +++ + +       G+         L D  G+AG
Sbjct: 305 RMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAG 364

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAV 309
            V +A  +  +     ++  W A+M+      D +    +   L+E+  +    Y  L  
Sbjct: 365 NVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFN 424

Query: 310 LTALCNAGLAGESEKWIERMKVRYKLE 336
           L A+        + +W E   +R  +E
Sbjct: 425 LYAV--------NGRWEEARTIRQMME 443


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/442 (37%), Positives = 257/442 (58%), Gaps = 2/442 (0%)

Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
           G  +HS++++       F  + LVH Y+     ++A K+F+ + ER++V + ++I G+A 
Sbjct: 14  GEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYAL 73

Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
           N R  ++L++F +M    V    + +   L A AEL A+   R  H + V  GLD N+  
Sbjct: 74  NGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHA 133

Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
           G  L+D Y K G +  A +VFDE +   + ++W +++ G A  G     LELF  LE +G
Sbjct: 134 GNALLDLYAKCGSIRQAHKVFDE-MEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKG 192

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
             P E +F+ VL A  + G+  E   + +RMK  Y + P +EHY C++  +GRAG ++ A
Sbjct: 193 LMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQA 252

Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418
                 MP +P+A VWR LL    IHG   +      +L+ + P     YV+++N+ +  
Sbjct: 253 HEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASE 312

Query: 419 GRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEEC 478
            RW +V +VR+ M    V+K  G S +E++ ++H F+ GDR H +TE+IY KLAE+ +  
Sbjct: 313 QRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLL 372

Query: 479 ERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDC 538
           +  GYVP    +L ++ + EK  AL YHSEK+A+AF L++ A  G  +R+VKNLR+C DC
Sbjct: 373 KLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAA-GIPIRVVKNLRVCADC 431

Query: 539 HESFKYISRVVEREIVVRDVNR 560
           H + K IS+V +REIVVRD +R
Sbjct: 432 HLAIKLISKVFDREIVVRDRSR 453



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 138/308 (44%), Gaps = 27/308 (8%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS--NSPLSLNIFLSMLRHPT 92
           + N L+  Y+       + +LF  +   N+V+W ++I+ ++    P   N  L++ R   
Sbjct: 32  VQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRP---NEALTLFREMG 88

Query: 93  LSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
           L  + P+  T+ SL   CA L  A   G   H   +K+ L      G+AL+  Y++  S 
Sbjct: 89  LRGVEPDGFTMVSLLSACAELG-ALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSI 147

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             A KVFDE+ E+ VV + ++IVG A N    ++L +F ++    +  +     G L A 
Sbjct: 148 RQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYAC 207

Query: 212 AELAAMEQC-----RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
           +    +++      R+   + +V  ++        ++D  G+AG+V  A   F +N+ + 
Sbjct: 208 SHCGMVDEGFDYFKRMKEEYGIVPKIEHYGC----MVDLLGRAGLVKQAHE-FIQNMPMQ 262

Query: 267 -NSIAWNAMMAGYAQQGDQS-TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
            N++ W  ++      G  +   +    LL++      +Y  L+ L A          ++
Sbjct: 263 PNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYA--------SEQR 314

Query: 325 WIERMKVR 332
           W +  KVR
Sbjct: 315 WSDVHKVR 322


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 180/559 (32%), Positives = 298/559 (53%), Gaps = 26/559 (4%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + VH+ A+KS+   R +  N L+  YSK   L  +LR+F  +   N+VSWT++I+ ++  
Sbjct: 271 KAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S      + +        +     S+   CA  S +   G  +H      ++    F 
Sbjct: 331 GRSDGAIRLLQQMEKEGVKLDVVATTSILHACAR-SGSLDNGKDVHDYIKANNMESNLFV 389

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  Y++  S D A  VF  +  +D++ +  MI     +SR                
Sbjct: 390 CNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSR---------------- 433

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             TM C+   L A A L+A+E+ + IHG+ + +G   +  V   L+D Y K G++  AR 
Sbjct: 434 --TMACI---LPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 488

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD  +   + ++W  M++GY   G  +  +  F+ +   G  PDE SF+++L A  ++G
Sbjct: 489 LFDM-IPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSG 547

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  +  ++   MK  + +EP LEHY C++  + R G L  A      +P  PDA +W AL
Sbjct: 548 LLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGAL 607

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    I+   ++A K+ +R+ ++ P +   YV++AN+ +   +W+EV  +R+ +  + +R
Sbjct: 608 LCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLR 667

Query: 438 KEGGRSWIEVKGKVHVFLAGDR-MHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           K  G SWIE+KGKV++F++G+   H  ++ I + L ++  + +  GY P     L N  +
Sbjct: 668 KNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADE 727

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            +K  AL  HSEKLA+AFGL++  PR KT+R+ KNLR+C DCHE  K++S+   REIV+R
Sbjct: 728 MQKEMALCGHSEKLAMAFGLLALPPR-KTVRVTKNLRVCGDCHEMAKFMSKETRREIVLR 786

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F NG C+C   W
Sbjct: 787 DSNRFHHFKNGYCSCRGFW 805



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 168/384 (43%), Gaps = 34/384 (8%)

Query: 55  LFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           LF+ +   +++SW ++IS + ++ L+   L I+  M+    L    +  T+ S+   CA+
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMY---LGIDVDLATIISVLVGCAN 263

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
            S     G ++HSL++K +   +    + L+  YS+    D A +VF+++ ER+VV + +
Sbjct: 264 -SGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 322

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           MI G+ ++ R   ++ +   M    V   +   +  L A A   +++  + +H +   + 
Sbjct: 323 MIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANN 382

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
           ++ N+ V   L+D Y K G +  A  VF   + V + I+WN M+                
Sbjct: 383 MESNLFVCNALMDMYTKCGSMDGANSVFS-TMVVKDIISWNTMIG--------------- 426

Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
              E++   PD  +   +L A C +  A E  K I    +R            L+    +
Sbjct: 427 ---ELK---PDSRTMACILPA-CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVK 479

Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYV 409
            G L  A R+   M    D   W  ++S   +HG  + A      + D  I P D+ +++
Sbjct: 480 CGVLGLA-RLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEP-DEVSFI 537

Query: 410 IVANVLSGVGRWDEVAEVRKVMKD 433
            +    S  G  ++      +MK+
Sbjct: 538 SILYACSHSGLLEQGWRFFYIMKN 561



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 101/230 (43%), Gaps = 3/230 (1%)

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           + P++A ++FD++ +RDV+ + +MI G+  N      L ++  M    +   +  +   L
Sbjct: 199 KRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVL 258

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
              A    +   + +H  A+ S  +R +     L+D Y K G +  A RVF E +   N 
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVF-EKMGERNV 317

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           ++W +M+AGY + G     + L   +E  G   D  +  ++L A   +G     +   + 
Sbjct: 318 VSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDY 377

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           +K    +E  L     L+    + G ++ A  +   M  + D   W  ++
Sbjct: 378 IKAN-NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVK-DIISWNTMI 425



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
           +R V  Y A I+ F Q   L +++ +    + S++ +  Y  S  L+  A   ++   + 
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTY--SSVLQLCAGSKSLTDGKK 120

Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
           +H     + +  + ++G  L+  Y   G + + RRVFD  +   N   WN M++ YA+ G
Sbjct: 121 VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFD-TMEKKNVYLWNFMVSEYAKIG 179

Query: 283 DQSTVLELFHLLEMRGF 299
           D    + LF ++  +G 
Sbjct: 180 DFKESICLFKIMVEKGI 196


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 308/561 (54%), Gaps = 19/561 (3%)

Query: 20  IVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HS 75
           +VH   +KS  + D  I ++LI  Y+    L  + +LFN   + ++VSW A+I     H 
Sbjct: 216 LVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHV 275

Query: 76  NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
               +  +F  M+    +S+     T+ + +     +  A      +   +L        
Sbjct: 276 EMGHARMVFDRMVCRDVISW----NTMINGYAIVGKIDEAKRLFDEMPERNL-------- 323

Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
              ++++  + +  + ++A  +F E+  RDVV + +M+  +AQ  +  ++L++F  MR+ 
Sbjct: 324 VSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 383

Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
            V  T   V   L A A L A+++   +H +   + ++ N IVGT L+D Y K G +S A
Sbjct: 384 GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLA 443

Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
            +VF+  +   + +AWN ++AG A  G+     +LF  ++  G  P++ +F+A+L+A  +
Sbjct: 444 TQVFNA-MESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSH 502

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           AG+  E +K ++ M   Y +EP +EHY C+I  + RAG LE+A  +   MP EP+ +   
Sbjct: 503 AGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALG 562

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           ALL    IHG  ++   +GKRLI++ P     Y++++N+ +   +WD+  +VR +MK   
Sbjct: 563 ALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNG 622

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECER-LGYVPVWDEMLHNV 494
           + K  G S IE+KG VH F+AGD  H  +  IY KL E+    +  +GY      +L ++
Sbjct: 623 ISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDM 682

Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
            + +K  AL  HSEKLA+A+GL+    + + +RIVKNLR+CRDCH   K IS+V  REI+
Sbjct: 683 EEEDKEHALAVHSEKLAIAYGLLHLDSK-EAIRIVKNLRVCRDCHHVIKLISKVYGREII 741

Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
           VRD NR+H F +G C+C D W
Sbjct: 742 VRDRNRFHHFEDGECSCLDFW 762



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 109/464 (23%), Positives = 210/464 (45%), Gaps = 67/464 (14%)

Query: 5   LNQQPQP-QNTSTDPRIVHA-RALKSSQADRSIYNNLITNYSKS---------------- 46
           +++ P P  N  ++P+I+      K+ +  + ++  +IT+++                  
Sbjct: 83  MSRTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFP 142

Query: 47  NLLSYSLRLFNHIPSPNIVSWTALISAHSNS--PL-SLNIFLSMLRHPTLSFLPNQRTLA 103
             L+Y+  +F+H+ +P    + +LI A S+S  PL +L ++ +ML+       P+  T  
Sbjct: 143 TFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQS---GLKPDHMTYP 199

Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
            + K C   S  + FGL +H+  +K       +  S+L+H Y+  +    AK++F+    
Sbjct: 200 FVIKACNESSVTW-FGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSA 258

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVI 223
           RDVV + AMI G+ ++  +  +  VF  M   DV                   +    +I
Sbjct: 259 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDV-------------------ISWNTMI 299

Query: 224 HGHAVVSGLD-----------RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
           +G+A+V  +D           RN++    ++ G+ K G V DA  +F E +   + ++WN
Sbjct: 300 NGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSE-MPCRDVVSWN 358

Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES---EKWIERM 329
           +M+A YAQ G  +  L LF  +   G  P E + +++L+A  + G   +      +I   
Sbjct: 359 SMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDN 418

Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
           ++      G    T L+    + G++  A ++  AM  + D   W  +++  AIHG    
Sbjct: 419 RIEVNSIVG----TALVDMYAKCGKISLATQVFNAMESK-DVLAWNTIIAGMAIHGNVKE 473

Query: 390 ASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
           A ++ K + +  + P +D  +V + +  S  G  DE  ++   M
Sbjct: 474 AQQLFKEMKEAGVEP-NDITFVAILSACSHAGMVDEGQKLLDCM 516


>gi|357115878|ref|XP_003559712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 650

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/528 (30%), Positives = 277/528 (52%), Gaps = 10/528 (1%)

Query: 54  RLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
           R+F+ +   N V+W ALI  ++ +     +L +FL+M R   ++  P++ T  +L     
Sbjct: 127 RVFDAMACTNAVTWNALIKGYAQAGRREEALELFLAMRRQSHVA--PDRYTFPALLSGIG 184

Query: 111 SLSHAFL---FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167
                      G ++H  ++K  L+  PF G++LV  Y+   + D  K VFD++   D V
Sbjct: 185 REQGGGCMQELGGAVHGQAIKSGLNRDPFVGASLVSMYAARGALDEVKVVFDDVDTLDPV 244

Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
            + ++I  +        +L  F  M   D+    +  S        ++ +E  R +H H+
Sbjct: 245 VWSSLISAYVNCKEEEGALLTFYRMLCRDIKPRQFVYSSMFAVCGSMSMLEMGRQVHAHS 304

Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
           + S  D++  +   L+  Y   G + DA RVF+ N  +++ +++N+++    Q G     
Sbjct: 305 LKSNTDKDAAMTNALLTMYSDCGCIRDALRVFNSN-DIVDVVSYNSIILALGQHGHPKEA 363

Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
            EL+  +   G  PD+ + L +L+A  +AGL  E       M     ++P  +HY C+  
Sbjct: 364 TELYRQMNCAGLMPDDVTLLNLLSAFNHAGLVHEGLHIFNSMLDMEGIKPTYQHYACVAD 423

Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407
            + R+G++ +A +    MPFE +A +WR +L   + H      +K+ + L ++ PY+ + 
Sbjct: 424 MLARSGQIGEAMKTIYEMPFEAEAPLWRIILGACSKHRDIRTGTKIAEMLFEMEPYEATN 483

Query: 408 YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDI 467
           Y+++ N+ + +GRW E  +VR +M+ R + ++   SWIE+  + H F   DR H  + +I
Sbjct: 484 YILLGNIYTRLGRWTEAEKVRNMMEKRGIDRDDAFSWIEISQRTHRFGVDDRSHPISREI 543

Query: 468 YTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLR 527
           Y  L  L+   +  GYVP      HN+    + E+L YH EKLA AFG ++  P G TLR
Sbjct: 544 YRNLDRLIGSIKVAGYVPDISFAAHNIKKDRREESLHYHCEKLAFAFGDLA-TPSGDTLR 602

Query: 528 IVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           I+KNLR+C DCH ++KY S +  REI++RD +R+H F  G+C+CGD W
Sbjct: 603 IMKNLRVCGDCHCAYKYFSLITGREIILRDNHRFHHFNKGACSCGDYW 650



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 12/273 (4%)

Query: 97  PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP---FCGSALVHFYSRFRSPDN 153
           P  R  ++LFK  +S S +   G  LH+ ++     D        +A+++FY+  R PD 
Sbjct: 67  PTPRLFSALFKAASSASPSM--GAQLHAQAVVRGFLDDAGSIILPTAILNFYASCREPDL 124

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYC----VSGAL 208
           A++VFD +   + V + A+I G+AQ  R  ++L +F  M R S V    Y     +SG  
Sbjct: 125 ARRVFDAMACTNAVTWNALIKGYAQAGRREEALELFLAMRRQSHVAPDRYTFPALLSGIG 184

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
           R        E    +HG A+ SGL+R+  VG  L+  Y   G + + + VFD+ +  L+ 
Sbjct: 185 REQGGGCMQELGGAVHGQAIKSGLNRDPFVGASLVSMYAARGALDEVKVVFDD-VDTLDP 243

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
           + W+++++ Y    ++   L  F+ +  R   P ++ + ++  A+C +    E  + +  
Sbjct: 244 VVWSSLISAYVNCKEEEGALLTFYRMLCRDIKPRQFVYSSMF-AVCGSMSMLEMGRQVHA 302

Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
             ++   +        L++     G + DA R+
Sbjct: 303 HSLKSNTDKDAAMTNALLTMYSDCGCIRDALRV 335


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 184/519 (35%), Positives = 289/519 (55%), Gaps = 7/519 (1%)

Query: 60  PSPNIVSWTALI--SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117
           P+P+   +++L   +AH   P++   F   L    L F  +  T  ++ K CA LS A  
Sbjct: 66  PAPDSFLFSSLTRTAAHHGLPVAAIAFYRGLLSAALPF--SSFTFTAVAKACADLS-ALR 122

Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
            G ++H+ S+ L      F  +ALV  YS+      A+K+FD IR+R VV + AMI G+ 
Sbjct: 123 TGAAIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYE 182

Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237
           QN      + V+ +M+++            L A A+  A++  R +    V   +D +V 
Sbjct: 183 QNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVF 242

Query: 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
           +G+ L++ Y + G+V  ARR FD  L   N + W +M+AGY   G     ++LFHL+   
Sbjct: 243 LGSALVNMYARCGVVDKARRWFDA-LQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCE 301

Query: 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357
           G  P+  +F+AVL+A  +AGL  E       MK  Y L P +EHY  ++   GRAG L++
Sbjct: 302 GPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDE 361

Query: 358 A-ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           A + I+  MP EP   VW A+L    +H   ++  ++ +RLI + P + S +V+++N+ +
Sbjct: 362 AMQFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEVAERLIALEPENPSYHVLLSNIYA 421

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
             G+   V +VR  M  RR++K+ G S IE+ G  H+F  G++ H +T +IY  L EL+ 
Sbjct: 422 LSGKMHHVEKVRNTMIKRRLKKQIGFSLIELGGTSHLFRMGEKSHPQTTEIYHYLEELIH 481

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
                GY+P  + +LH + + E+  AL YHSEKLA+A+GL+        +R++KNLRIC 
Sbjct: 482 RITAAGYMPETESVLHELEEEEREGALRYHSEKLAVAYGLMMSVGSTTPIRVIKNLRICG 541

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH + K++S V  REIVVRD +R+H F +G C+C + W
Sbjct: 542 DCHLAIKFMSAVENREIVVRDKHRFHHFKDGKCSCLEYW 580


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 187/549 (34%), Positives = 296/549 (53%), Gaps = 13/549 (2%)

Query: 30  QADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHS-NSPLSLNIFLS 86
           +A+  +   LI+ Y K  L+  + ++F   P  S   V + ALIS ++ NS +S   F+ 
Sbjct: 82  EAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFM- 140

Query: 87  MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
             R        +  T+  L   C    + +L G SLH   +K   + +    ++ +  Y 
Sbjct: 141 FRRMKETGVSVDSVTILGLVPLCTVPEYLWL-GRSLHGECVKGGTYSEVAVLNSFITMYM 199

Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
           +  S ++ +++FDE+  + ++ + A+I G++QN    D L +F  M+SS V    + +  
Sbjct: 200 KCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVS 259

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
            L + A L A +  + +      +G   NV +   LI  Y + G ++ AR VFD  + V 
Sbjct: 260 VLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFD-IMPVK 318

Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
           + ++W AM+  Y   G   T L LF  +  RG  PD   F+ VL+A  ++GL  +  +  
Sbjct: 319 SLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELF 378

Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
             MK  YKLEPG EHY+CL+  +GRAGRL++A     +MP EPD AVW ALL    IH  
Sbjct: 379 RAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKN 438

Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
            DMA     ++I+  P +   YV+++N+ S     + +  +R +M++R  RK+ G S++E
Sbjct: 439 VDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVE 498

Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
            KGKVH+FLAGDR HE+TE+++  L EL      L        M  + G+ E       H
Sbjct: 499 HKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELA-----GNMDCDRGE-EVSSTTREH 552

Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
           SE+LA+AFG+++  P G  + ++KNLR+C DCH   K +S++V+R  VVRD +R+H F +
Sbjct: 553 SERLAIAFGILNSIP-GTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKD 611

Query: 567 GSCTCGDLW 575
           G C+C D W
Sbjct: 612 GVCSCKDYW 620



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 174/366 (47%), Gaps = 13/366 (3%)

Query: 80  SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
           S++++ SMLR  +    P+  +   + K+CASLS   + G  LH   ++     +PF  +
Sbjct: 34  SISLYRSMLRSGSS---PDAFSFPFILKSCASLSLP-VSGQQLHCHVIRGGCEAEPFVLT 89

Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDV--VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
           AL+  Y +    ++A+KVF+E        VCY A+I G+  NS++ D+  +F  M+ + V
Sbjct: 90  ALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGV 149

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
                 + G +        +   R +HG  V  G    V V    I  Y K G V   RR
Sbjct: 150 SVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRR 209

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FDE + V   I WNA+++GY+Q G    VLELF  ++  G  PD ++ ++VL++  + G
Sbjct: 210 LFDE-MPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLG 268

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
                ++  E ++      P +     LIS   R G L  A  +   MP +   + W A+
Sbjct: 269 AKKIGQEVGELVEAN-GFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVS-WTAM 326

Query: 378 LSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           +    +HG  +    +   +I   I P D + +V+V +  S  G  D+  E+ + MK R 
Sbjct: 327 IGCYGMHGMGETGLTLFDDMIKRGIRP-DGAVFVMVLSACSHSGLTDKGLELFRAMK-RE 384

Query: 436 VRKEGG 441
            + E G
Sbjct: 385 YKLEPG 390



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 19/221 (8%)

Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
            A  S   +S+S++  M  S      +     L++ A L+     + +H H +  G +  
Sbjct: 25  LAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAE 84

Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENL-SVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
             V T LI  Y K G+V DAR+VF+EN  S    + +NA+++GY      S    +F  +
Sbjct: 85  PFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRM 144

Query: 295 EMRGFAPDEYSFLAVLTALCNA--------GLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
           +  G + D  + L  L  LC           L GE  K     +V              I
Sbjct: 145 KETGVSVDSVTILG-LVPLCTVPEYLWLGRSLHGECVKGGTYSEVAV--------LNSFI 195

Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
           +   + G +E   R+   MP +     W A++S  + +G A
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVK-GLITWNAVISGYSQNGLA 235


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 179/538 (33%), Positives = 289/538 (53%), Gaps = 23/538 (4%)

Query: 49  LSYSLRLFNHIPSPNIVSWTALISAHS--NSPLS-LNIFLSMLRHPTLSFLPNQRTLASL 105
           L YS RLF+ + +P +  + A++ A+S   SPL  L ++  M R    +       L+S 
Sbjct: 77  LGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRA-----DPLSSS 131

Query: 106 F--KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
           F  K+C  L  + LFG+ +H+              ++++  YS    P+ A K+FDE+ +
Sbjct: 132 FAVKSCIKLL-SLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQ 190

Query: 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA------LRAAAELAAM 217
           +DVV +  +I    +N R  D+L +F  M+S     T  C          L+A A+L A+
Sbjct: 191 KDVVAWNVLISCLTRNKRTRDALGLFEIMQSP----TYLCQPDKVTCLLLLQACADLNAL 246

Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
           E    IHG+    G +    +   LI  Y + G +  A  VFD+ ++  N ++W+AM++G
Sbjct: 247 EFGERIHGYIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDK-MTEKNVVSWSAMISG 305

Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
            +  G     +E F  ++  G  P +++F AVL+A  + GL  E   + +RM+  + + P
Sbjct: 306 LSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAP 365

Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
            + HY C++  +GRAG L+ A  + M+M   PDA +WR LL    IHG  ++  ++ + L
Sbjct: 366 NVHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHL 425

Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
           I++   +   YV++ N+ S  G WD+V E+RK+MK++ +      + IE+ G VH F   
Sbjct: 426 IELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVD 485

Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
           D  H   + IY +L E+ ++ +  GY       LH +  ++K  AL  HSEKLA+AFG++
Sbjct: 486 DISHPMKDKIYKQLDEINKQLKIAGYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVL 545

Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +  P G+T+RI  N+R C DCH   KYIS V  R++VVRD +R+H F  G C+C D W
Sbjct: 546 ATPP-GRTIRIANNIRTCMDCHNFAKYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 141/302 (46%), Gaps = 26/302 (8%)

Query: 21  VHARA-LKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
           +HAR  +   QAD  +  +++  YS       + +LF+ +P  ++V+W  LIS  + +  
Sbjct: 149 IHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKR 208

Query: 80  S---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
           +   L +F  +++ PT    P++ T   L + CA L+ A  FG  +H    +   + +  
Sbjct: 209 TRDALGLF-EIMQSPTYLCQPDKVTCLLLLQACADLN-ALEFGERIHGYIQQHGYNTESN 266

Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
             ++L+  YSR    D A +VFD++ E++VV + AMI G + N    +++  F +M+ + 
Sbjct: 267 LCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNG 326

Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYGKAG 250
           V    +  +  L A +    +++     G A    + +  ++         ++D  G+AG
Sbjct: 327 VEPGDHTFTAVLSACSHCGLVDE-----GMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAG 381

Query: 251 IVSDARRVFDENLSVLNSIAWNAMMA-----GYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
           ++  A  +        ++  W  ++      G+   G++  ++E  HL+E++     +Y 
Sbjct: 382 MLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGER--IVE--HLIELKSQEAGDYV 437

Query: 306 FL 307
            L
Sbjct: 438 LL 439



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 153/347 (44%), Gaps = 27/347 (7%)

Query: 90  HPTLSFLPNQR-TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR- 147
           H ++SF   +R  L SL K+C   S      L +H+  +  S    P      + F +R 
Sbjct: 17  HHSISFSHFEREPLISLIKSCTHKSQL----LQIHAHIITTSSIQDPIVS---LRFLTRT 69

Query: 148 ----FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
               FR    ++++FD +    V  Y AM+  ++ +   ++ L ++ DM    V +    
Sbjct: 70  ASAPFRDLGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLS 129

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
            S A+++  +L ++     IH    ++G   + ++ T ++D Y   G   +A ++FDE +
Sbjct: 130 SSFAVKSCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDE-V 188

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF--APDEYSFLAVLTALC--NAGLA 319
              + +AWN +++   +       L LF +++   +   PD+ + L +L A    NA   
Sbjct: 189 PQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEF 248

Query: 320 GES-EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
           GE    +I++    Y  E  L     LIS   R GR++ A  +   M  E +   W A++
Sbjct: 249 GERIHGYIQQHG--YNTESNL--CNSLISMYSRCGRMDKAYEVFDKMT-EKNVVSWSAMI 303

Query: 379 SFSAI--HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
           S  ++  HG+  + +    +   + P  D  +  V +  S  G  DE
Sbjct: 304 SGLSMNGHGREAIEAFWEMQKNGVEP-GDHTFTAVLSACSHCGLVDE 349


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 178/559 (31%), Positives = 301/559 (53%), Gaps = 26/559 (4%)

Query: 19  RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           + VH+ A+KSS   R +  N L+  YSK   L  +LR+F  +   N+VSWT++I+ ++  
Sbjct: 133 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 192

Query: 78  PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
             S    + + +        +   + S+   CA  S +   G  +H      ++    F 
Sbjct: 193 GWSDGAIILLQQMEKEGVKLDVVAITSILHACAR-SGSLDNGKDVHDYIKANNMASNLFV 251

Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
            +AL+  Y++  S + A  VF  +  +D++ +  M+     +SR                
Sbjct: 252 CNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSR---------------- 295

Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
             TM C+   L A A L+A+E+ + IHG+ + +G   +  V   L+D Y K G++  AR 
Sbjct: 296 --TMACI---LPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 350

Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           +FD  +   + ++W  M+AGY   G  +  +  F+ +   G  PDE SF+++L A  ++G
Sbjct: 351 LFDM-IPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSG 409

Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
           L  +  ++   MK  + +EP LEHY C++  + R G L  A +    +P  PDA +W AL
Sbjct: 410 LLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGAL 469

Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
           L    I+   ++A K+ +R+ ++ P +   YV++AN+ +   +W+EV  +R+ +  + +R
Sbjct: 470 LCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLR 529

Query: 438 KEGGRSWIEVKGKVHVFLAGDR-MHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
           K  G SWIE+KG+V++F++G+   H  ++ I + L ++  + +  GY P     L N  +
Sbjct: 530 KNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADE 589

Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
            +K  AL  HSEKLA+AFGL++  PR KT+R+ KNLR+C DCHE  K++S+   REIV+R
Sbjct: 590 MQKEMALCGHSEKLAMAFGLLTLPPR-KTIRVTKNLRVCGDCHEMAKFMSKETRREIVLR 648

Query: 557 DVNRYHRFLNGSCTCGDLW 575
           D NR+H F +G C+C   W
Sbjct: 649 DSNRFHHFKDGYCSCRGFW 667



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 112/225 (49%), Gaps = 8/225 (3%)

Query: 55  LFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
           LF+ +   +++SW ++IS + ++ L+   L I+  M+    L    +  T+ S+   CA 
Sbjct: 69  LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM---YLGIDVDLATIISVLVGCAK 125

Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
            S     G ++HSL++K S   +    + L+  YS+    D A +VF+++ ER+VV + +
Sbjct: 126 -SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 184

Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
           MI G+ ++     ++ +   M    V   +  ++  L A A   +++  + +H +   + 
Sbjct: 185 MIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANN 244

Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMA 276
           +  N+ V   L+D Y K G +  A  VF   + V + I+WN M+ 
Sbjct: 245 MASNLFVCNALMDMYAKCGSMEGANSVFS-TMVVKDIISWNTMVG 288



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 1/169 (0%)

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
           +  ++A ++FD++ +RDV+ + +MI G+  N      L ++  M    +   +  +   L
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 120

Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
              A+   +   + +H  A+ S  +R +     L+D Y K G +  A RVF E +   N 
Sbjct: 121 VGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVF-EKMGERNV 179

Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
           ++W +M+AGY + G     + L   +E  G   D  +  ++L A   +G
Sbjct: 180 VSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 228


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 180/585 (30%), Positives = 302/585 (51%), Gaps = 38/585 (6%)

Query: 21  VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP 78
           +HA AL++     + +  + L+  Y     +     +F+ +    I  W A+I+ ++ S 
Sbjct: 238 IHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSE 297

Query: 79  ---LSLNIFLSMLRHPTLSFLPNQRTLASL---FKTCASLSHAFLFGLSLHSLSLKLSLH 132
               +L +F+ M          N  T++S+   +  C  +S        +H   +K  L 
Sbjct: 298 HDEKALMLFIEM--EAAAGLYSNATTMSSIVPAYVRCEGISRK----EGIHGYVIKRGLE 351

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
              +  +AL+  YSR      +K++FD + +RD+V +  +I  +    R  D+L +  +M
Sbjct: 352 TNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEM 411

Query: 193 RSSDVGSTM----------------YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
           +  +  ST                   +   L   A L+A+ + + IH +A+ + L   V
Sbjct: 412 QRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQV 471

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            VG+ L+D Y K G ++ ARRVFD+ + + N I WN ++  Y   G     LELF  +  
Sbjct: 472 TVGSALVDMYAKCGCLNLARRVFDQ-MPIRNVITWNVIIMAYGMHGKGKESLELFEDMVA 530

Query: 297 RG-----FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
            G       P E +F+A+  +  ++G+  E      +MK  + +EP  +HY C++  +GR
Sbjct: 531 EGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGR 590

Query: 352 AGRLEDAERIAMAMPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
           AG++E+A  +   MP   D    W +LL    I+   ++     + L+ + P   S YV+
Sbjct: 591 AGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVL 650

Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
           ++N+ S  G WD+   +R+ MK   V+KE G SWIE   +VH FLAGD  H ++E ++  
Sbjct: 651 LSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDF 710

Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
           L  L E  ++ GYVP    +LH++ + EK   L  HSEKLA+AFG+++  P G T+R+ K
Sbjct: 711 LETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILN-TPPGTTIRVAK 769

Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           NLR+C DCH + K+IS++ +REI++RD  R+H F +G+C+CGD W
Sbjct: 770 NLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 170/382 (44%), Gaps = 21/382 (5%)

Query: 21  VHARALK---SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---H 74
           +HA   K    S +  +I N L+  Y K   L  + ++F+ I   + VSW ++ISA    
Sbjct: 32  IHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRF 91

Query: 75  SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSH--AFLFGLSLHSLSLKLSLH 132
               +++  F  ML      F P+  TL S+   C++L        G  +H    +   H
Sbjct: 92  EEWEVAIKAFRLMLME---GFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKG-H 147

Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
            + F  +AL+  Y++    D+AK +     +RD+V + +MI  F+QN R +++L     M
Sbjct: 148 WRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLM 207

Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV-VSGLDRNVIVGTGLIDGYGKAGI 251
               V       +  L A + L  +   + IH +A+    +  N  VG+ L+D Y   G 
Sbjct: 208 VLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQ 267

Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
           V   R VFD  L     + WNAM+AGYAQ       L LF  +EM   A   YS    ++
Sbjct: 268 VESGRLVFDSVLDRKIGL-WNAMIAGYAQSEHDEKALMLF--IEMEA-AAGLYSNATTMS 323

Query: 312 ALCNAGLAGES---EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
           ++  A +  E    ++ I    ++  LE        LI    R G ++ ++RI  +M  +
Sbjct: 324 SIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSME-D 382

Query: 369 PDAAVWRALLSFSAIHGKADMA 390
            D   W  +++   I G++  A
Sbjct: 383 RDIVSWNTIITSYVICGRSSDA 404


>gi|356509555|ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 542

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 180/479 (37%), Positives = 261/479 (54%), Gaps = 9/479 (1%)

Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
           T   L K CA  S     G  LH+L  KL      +  + LVH YS F     A+ +FD 
Sbjct: 69  TFPFLLKCCAP-SKLPPLGKQLHALLTKLGFAPDLYIQNVLVHMYSEFGDLVLARSLFDR 127

Query: 161 IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
           +  RDVV + +MI G   +   V+++S+F  M    V      V   LRA A+  A+   
Sbjct: 128 MPHRDVVSWTSMISGLVNHDLPVEAISLFERMLQCGVEVNEATVISVLRARADSGALSMG 187

Query: 221 RVIHGHAVVSGLD--RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
           R +H +    G++      V T L+D Y K+G +    R   +++   +   W AM++G 
Sbjct: 188 RKVHANLEEWGIEIHSKSNVSTALVDMYAKSGCIV---RKVFDDVVDRDVFVWTAMISGL 244

Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
           A  G     +++F  +E  G  PDE +   VLTA  NAGL  E       ++ RY ++P 
Sbjct: 245 ASHGLCKDAIDMFVDMESSGVKPDERTVTTVLTACRNAGLIREGFMLFSDVQRRYGMKPS 304

Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL- 397
           ++H+ CL+  + RAGRL++AE    AMP EPDA +WR L+    +HG  D A ++ K L 
Sbjct: 305 IQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDAVLWRTLIWACKVHGDDDRAERLMKHLE 364

Query: 398 -IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLA 456
             D+   D  +Y++ +NV +  G+W   AEVR++M  + + K  G S IE+ G VH F+ 
Sbjct: 365 IQDMRADDSGSYILTSNVYASTGKWCNKAEVRELMNKKGLVKPLGSSRIEIDGGVHEFVM 424

Query: 457 GDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGL 516
           GD  H   E+I+ +LAE+M++  + GY P   E+L  + D EK   L +HSEKLALA+GL
Sbjct: 425 GDYNHPEAEEIFVELAEVMDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKLALAYGL 484

Query: 517 VSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           +     G T+ IVKNLR C DCHE  K IS++ +R+IVVRD  R+H F NG C+C D W
Sbjct: 485 IR-IGHGSTIWIVKNLRSCEDCHEFMKLISKICKRDIVVRDRIRFHHFKNGECSCKDYW 542



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 131/310 (42%), Gaps = 23/310 (7%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91
           D  I N L+  YS+   L  +  LF+ +P  ++VSWT++IS   N  L +       R  
Sbjct: 101 DLYIQNVLVHMYSEFGDLVLARSLFDRMPHRDVVSWTSMISGLVNHDLPVEAISLFERML 160

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS--LSLKLSLHDKPFCGSALVHFYSRFR 149
                 N+ T+ S+ +  A  S A   G  +H+      + +H K    +ALV  Y+  +
Sbjct: 161 QCGVEVNEATVISVLRARAD-SGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYA--K 217

Query: 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
           S    +KVFD++ +RDV  + AMI G A +    D++ +F DM SS V      V+  L 
Sbjct: 218 SGCIVRKVFDDVVDRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTTVLT 277

Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYGKAGIVSDARRVFDENL 263
           A      + +     G  + S + R   +         L+D   +AG + +A    +   
Sbjct: 278 ACRNAGLIRE-----GFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMP 332

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAGLAGES 322
              +++ W  ++      GD      L   LE++   A D  S++       + G     
Sbjct: 333 IEPDAVLWRTLIWACKVHGDDDRAERLMKHLEIQDMRADDSGSYILTSNVYASTG----- 387

Query: 323 EKWIERMKVR 332
            KW  + +VR
Sbjct: 388 -KWCNKAEVR 396


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/541 (31%), Positives = 282/541 (52%), Gaps = 36/541 (6%)

Query: 35   IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
            + N LI+ Y K   L  + R+ + +P  ++VSW +L++  + +    +          L 
Sbjct: 1163 VGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLG 1222

Query: 95   FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
              P+  T+ASL     ++++  L  +S                                 
Sbjct: 1223 LKPDAGTMASLL---PAVTNTCLDNVSF-------------------------------V 1248

Query: 155  KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
            K++F ++  + +V +  MI  +  NS   +++ +F  M    V      ++  L A  +L
Sbjct: 1249 KEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDL 1308

Query: 215  AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
            +A+   R IH + V   L  N+++   LID Y K G +  AR VFD+ +   + ++W +M
Sbjct: 1309 SALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQ-MKFRDVVSWTSM 1367

Query: 275  MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
            ++ Y   G     + LF  ++  G  PD  +F++VL+A  +AGL  E   + + M    K
Sbjct: 1368 ISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECK 1427

Query: 335  LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
            + P +EH+ C++  +GRAG++++A      MP EP+  VW ALLS   ++    +     
Sbjct: 1428 IVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAA 1487

Query: 395  KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
             +L  + P     YV+++N+ +  GRW++V  VR +MK + ++K  G S  E+  +VH F
Sbjct: 1488 DQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTF 1547

Query: 455  LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
            LAGD+ H +++ IY +L  L+ + +  GYVP  D  LH+V + +K   L  HSEKLA+AF
Sbjct: 1548 LAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAF 1607

Query: 515  GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
             +++ AP G  +RI KNLR+C DCH + K IS++V REI +RD NR+H F NG C+CGD 
Sbjct: 1608 AILNTAP-GSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDY 1666

Query: 575  W 575
            W
Sbjct: 1667 W 1667



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 2/198 (1%)

Query: 122  LHS-LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            LHS + +   LH  P  G  L+  Y+    P + + +FDEI +++VV +  MI  +  N 
Sbjct: 1046 LHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNH 1105

Query: 181  RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
               D+L VF +M    +    Y     L+A++    +     IH   V  GLD NV VG 
Sbjct: 1106 LYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGN 1165

Query: 241  GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            GLI  YGK G + +A RV DZ +   + ++WN+++AG A+ G     LE+   +E+ G  
Sbjct: 1166 GLISMYGKCGCLVEACRVLDZ-MPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLK 1224

Query: 301  PDEYSFLAVLTALCNAGL 318
            PD  +  ++L A+ N  L
Sbjct: 1225 PDAGTMASLLPAVTNTCL 1242



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 166/385 (43%), Gaps = 46/385 (11%)

Query: 55   LFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
            +F+ IP  N+V +  +I ++ N+ L   +L +F +M  H      P+  T   + K  +S
Sbjct: 1082 IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGH---GIDPDHYTYPCVLKA-SS 1137

Query: 112  LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
             S     G+ +H+  +++ L    F G+ L+  Y +      A +V DZ+  RDVV + +
Sbjct: 1138 GSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNS 1197

Query: 172  MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
            ++ G A+N +  D+L V  +M           + G    A  +A++              
Sbjct: 1198 LVAGCARNGQFDDALEVCKEME----------LLGLKPDAGTMASL-------------- 1233

Query: 232  LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
                 +  T L +       VS  + +F   L+  + ++WN M+A Y      +  +++F
Sbjct: 1234 --LPAVTNTCLDN-------VSFVKEMF-MKLANKSLVSWNVMIAVYMNNSMPAEAVDIF 1283

Query: 292  HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
              +E     PD  S  +VL A C    A    + I    VR +L+P L     LI    +
Sbjct: 1284 LQMEDHAVDPDAISIASVLPA-CGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAK 1342

Query: 352  AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYV 409
             G LE A  +   M F  D   W +++S   ++GK   A  +  R+ D  +NP D  A+V
Sbjct: 1343 CGCLEYAREVFDQMKFR-DVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNP-DSIAFV 1400

Query: 410  IVANVLSGVGRWDEVAEVRKVMKDR 434
             V +  S  G  DE     K+M + 
Sbjct: 1401 SVLSACSHAGLLDEGRYYFKLMTEE 1425


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 158/440 (35%), Positives = 244/440 (55%), Gaps = 4/440 (0%)

Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
           +AL+  Y++    D A  +F+ +  R++V +  MI G++Q+     +LS+F +M   D G
Sbjct: 204 NALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSG 263

Query: 199 --STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
                  +   L A A+L+ +E+ R IH  A   GL+ N  V   L   Y K G + DAR
Sbjct: 264 VRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDAR 323

Query: 257 RVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
             FD+ N +  N IAWN M+  YA  G     +  F  +   G  PD+ +F  +L+   +
Sbjct: 324 NCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSH 383

Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
           +GL     K+   M   Y + P +EHY C+   +GRAGRL +A ++   MP     ++W 
Sbjct: 384 SGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWG 443

Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
           +LL+    H   +MA    ++L  + P +   YV+++N+ +  GRW EV ++R ++K + 
Sbjct: 444 SLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQG 503

Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
            +K  G SWIE+ GK H+FL GD  H + ++IY  L  L E+ +  GY P    +LH++ 
Sbjct: 504 TKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDIS 563

Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
           + EK   L  HSEKLA+AFG+++  P    LR+ KNLRIC DCH +  +IS +  RE++V
Sbjct: 564 EEEKEFNLIAHSEKLAVAFGILN-TPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIV 622

Query: 556 RDVNRYHRFLNGSCTCGDLW 575
           RD+NR+H F  G C+CGD W
Sbjct: 623 RDINRFHHFKGGCCSCGDYW 642



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 25/225 (11%)

Query: 170 GAMIVGFAQNSRLVDS-LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228
           G+ +V F  +S  +DS +SVF  +         +     L+++ EL ++   + +HG  +
Sbjct: 108 GSKMVAFYASSGDIDSSVSVFNGI------GDYFTFPFVLKSSVELLSVWMGKCVHGLIL 161

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
             GL  ++ V T LI  YGK G ++DA +VFD N+++ +  +WNA++AGY + G     L
Sbjct: 162 RIGLQFDLYVATSLIILYGKCGEINDAGKVFD-NMTIRDVSSWNALLAGYTKSGCIDAAL 220

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL-EHYTCLIS 347
            +F  +  R       S+  +++    +GLA ++    + M    K + G+  ++  ++S
Sbjct: 221 AIFERMPWRNIV----SWTTMISGYSQSGLAQQALSLFDEM---VKEDSGVRPNWVTIMS 273

Query: 348 AMGRAGRLEDAER------IAMAMPFEPDAAVWRALLSFSAIHGK 386
            +    +L   ER      +A  M    +A+V   L++ +A++ K
Sbjct: 274 VLPACAQLSTLERGRQIHELACRMGLNSNASV---LIALTAMYAK 315


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 160/423 (37%), Positives = 251/423 (59%), Gaps = 3/423 (0%)

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
           A++VF ++  +D V +  MIVGFA N    D+ + F ++R   +      ++G L A A+
Sbjct: 222 AREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQ 281

Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
             A E  R++HG    SG  + + V   LID Y K G +  AR VFD N+   ++++W A
Sbjct: 282 AGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFD-NMLRRSAVSWTA 340

Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333
           M+AG A  G     + LF+ +E     PD  +F+++L A  +AGL      +  RM   Y
Sbjct: 341 MIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTY 400

Query: 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
            +EP +EHY C++   GRAG+L+ A      MP  P+  VWR LL   +IHG   +A ++
Sbjct: 401 GIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQV 460

Query: 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHV 453
            ++L +++P +   +V+++N+ +  G+W +VA +R+ M  +R++K  G S IEV   ++ 
Sbjct: 461 KRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYS 520

Query: 454 FLAGDRMHERTEDIYTKLAELMEECE-RLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
           F+AG++ ++   + + KL E+M       GYVP    +LH++   EK +++  HSEKLA+
Sbjct: 521 FVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAV 580

Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
           AFG+ +  PRG+ +R+VKNLRICRDCH   K IS+V E EIVVRD +R+H F +GSC+C 
Sbjct: 581 AFGM-AKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCR 639

Query: 573 DLW 575
           D W
Sbjct: 640 DYW 642



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 114/258 (44%), Gaps = 20/258 (7%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS--AHSNSPLSLNIFLSMLRHPTL 93
           +N ++  Y+K+  L  +  +F  +P  + VSW+ +I   AH+ +      F   +R   +
Sbjct: 206 WNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGM 265

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
              PN+ +L  +   CA  + AF FG  LH    K          +AL+  YS+  + D 
Sbjct: 266 R--PNEVSLTGVLSACAQ-AGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDM 322

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG-------STMYCVSG 206
           A+ VFD +  R  V + AMI G A +    +++ +F +M  S++        S +Y  S 
Sbjct: 323 ARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSH 382

Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG-LIDGYGKAGIVSDARRVFDENLSV 265
           A     +L      R+++ + +       VI   G ++D YG+AG +  A     +    
Sbjct: 383 A--GLVDLGCSYFSRMVNTYGI-----EPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPIS 435

Query: 266 LNSIAWNAMMAGYAQQGD 283
            N I W  ++   +  G+
Sbjct: 436 PNDIVWRTLLGACSIHGN 453


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 192/579 (33%), Positives = 297/579 (51%), Gaps = 52/579 (8%)

Query: 32  DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
           D  + + ++  Y+K      + R+F+ +   N VSWT LI     +     S+ +F + +
Sbjct: 325 DPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELF-NQM 383

Query: 89  RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
           R   ++   +Q  LA+L   C + +     G  LHSL LK          ++L+  Y++ 
Sbjct: 384 RAELMAV--DQFALATLISGCCN-TMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKC 440

Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV----------- 197
            +  NA+ +F+ + ERD+V +  MI  ++Q   +  +   F DM + +V           
Sbjct: 441 GNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYI 500

Query: 198 -------GSTMY--------------CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
                  G  MY                    R  A++ A +    I GH V  GL  + 
Sbjct: 501 QHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDT 560

Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
            V   +I  Y K G +S+AR+ FD  LS  + ++WNAM+ GY+Q G     +E+F  +  
Sbjct: 561 SVVNAVITMYSKCGRISEARKAFD-FLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILN 619

Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
           +G  PD  S++AVL+   ++GL  E + + + MK  + + PGLEH++C++  +GRAG L 
Sbjct: 620 KGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLI 679

Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
           +A+ +   MP +P A VW ALLS    HG  D+A    K L D++      Y+++A + +
Sbjct: 680 EAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYA 739

Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
             G+ D+ A+VRK+M+D+ ++K  G SW+EV  +VHVF A D  H +   I  KL ELME
Sbjct: 740 DAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELME 799

Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
           +   LGYV             E   +  +HSEKLA+AFG++S  P    + I+KNLRIC 
Sbjct: 800 KIAHLGYVRT-----------ESPRSEIHHSEKLAVAFGIMS-LPAWMPIHIMKNLRICD 847

Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
           DCH   K IS V +RE V+RD  R+H F  GSC+C D W
Sbjct: 848 DCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 172/379 (45%), Gaps = 42/379 (11%)

Query: 36  YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLN---IFLSMLRHPT 92
           +N ++  Y+K   LS ++ LF  +P+ ++ SW  ++S +  S   LN   IF+SM +  T
Sbjct: 95  HNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ--T 152

Query: 93  LSFLPNQRTLASLFKTCASLS-HAFLFGLSLHSLSLKLSLHDKPFCGSALVHF------- 144
              LPN  T   + K+C +L  H     L L  L  K    D P   +ALV         
Sbjct: 153 GDSLPNAFTFGCVMKSCGALGWHEV--ALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210

Query: 145 ------YSRFRSP------------------DNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
                 +SR ++P                  D+A ++F  + ERDVV +  +I   +++ 
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
           R+ ++L +  DM    V       + +L A A L+++E  + +H   + +    +  V +
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVAS 330

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
            +++ Y K G   +A+RVF  +L   NS++W  ++ G+ Q G  S  +ELF+ +     A
Sbjct: 331 AMVELYAKCGCFKEAKRVF-SSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMA 389

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
            D+++   +++  CN        + +  + ++      +     LIS   + G L++AE 
Sbjct: 390 VDQFALATLISGCCNTMDICLGSQ-LHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAEL 448

Query: 361 IAMAMPFEPDAAVWRALLS 379
           I   M  E D   W  +++
Sbjct: 449 IFNFMA-ERDIVSWTGMIT 466



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 126/298 (42%), Gaps = 44/298 (14%)

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
           S +   + LA   ++C + S A     +LHS  + + L    F  + L+H Y    +  +
Sbjct: 20  SHMAITQALADALRSCGARS-ALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSD 78

Query: 154 AKKVF-DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
           A+ +  DEI E +V+ +  M+ G+A+   L D++ +F  M + DV S    +SG  ++  
Sbjct: 79  ARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQ 138

Query: 213 ELAA-----------------------MEQCRVIHGHAV-------VSGLDR--NVIVGT 240
            L A                       M+ C  +  H V       +S  D   +  V T
Sbjct: 139 FLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQT 198

Query: 241 GLIDGYGKAGIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
            L+D   + G +  A + F   +N ++   I  N+M+ GYA+       LE+F  +  R 
Sbjct: 199 ALVDMLVRCGAMDFASKQFSRIKNPTI---ICRNSMLVGYAKSHGVDHALEIFKSMPER- 254

Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
              D  S+  V++AL  +G   E+   +  M  +  + P    YT  ++A  R   LE
Sbjct: 255 ---DVVSWNMVISALSKSGRVREALDMVVDMHGK-GVRPDSTTYTSSLTACARLSSLE 308



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 10/236 (4%)

Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
           ++ ALR+    +A+   R +H   +  GL   V +   L+  Y   G +SDAR +  + +
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEI 87

Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
           +  N I  N MM GYA+ G  S  +ELF  +  R    D  S+  +++    +G    + 
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTR----DVASWNTIMSGYYQSGQFLNAL 143

Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA-ERIAMAMPFEP--DAAVWRALLSF 380
                M+      P    + C++ + G  G  E A + + +   F+   D  V  AL+  
Sbjct: 144 DIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDM 203

Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
               G  D ASK   R+ +      ++ ++      GV   D   E+ K M +R V
Sbjct: 204 LVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGV---DHALEIFKSMPERDV 256


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 168/547 (30%), Positives = 303/547 (55%), Gaps = 15/547 (2%)

Query: 37   NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
            N+L+  YSK   ++ + ++F  +   +++SW A+I+ + ++     +L  F  M++   +
Sbjct: 509  NSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATF-GMMQEAKI 567

Query: 94   SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH--DKPFCGSALVHFYSRFRSP 151
               P++ TL SL K C+S    +  G  +H   ++   H         +LV  Y +  + 
Sbjct: 568  KERPDEFTLTSLLKACSSTGMIYA-GKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNL 626

Query: 152  DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             +A+K FD+I+E+ ++ + ++I+G+AQ    V+++ +F  ++        + +S  +   
Sbjct: 627  FSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVF 686

Query: 212  AELAAMEQCRVIHGHAV--VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
            A+ A ++Q + +    V   SGL+ +V     L+D Y K G+V +A + F E + + + I
Sbjct: 687  ADFALLQQGKQMQALVVKLPSGLETSV--SNSLVDMYLKCGLVDEAEKCFAE-MQLKDVI 743

Query: 270  AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
            +W  M+ GY + G     + +F+ +      PDE  +LAVL+A  ++G+  E E+   ++
Sbjct: 744  SWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKL 803

Query: 330  KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
                 ++P +EHY C++  +GRAGRL++A+ +   MP +P+  +W+ LLS   +HG  ++
Sbjct: 804  LETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIEL 863

Query: 390  ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG 449
              ++GK L+ I+  + + YV+++N+    G W+E    R++   + ++KE G SW+E++ 
Sbjct: 864  GKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIER 923

Query: 450  KVHVFLAGDRMHERTEDIYTKLAELMEEC-ERLGYVPVWDEMLHNVGDREKREALWYHSE 508
            +VH F +G+  H  T  I   L E+     E LGYV      LH++ D  K E L  HSE
Sbjct: 924  EVHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYGLKHELHDIDDESKEENLRAHSE 983

Query: 509  KLALAFGLVSGA--PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
            KLA+   L +G    +GKT+R+ KNLR+C DCHE  K +S++ +   VVRD  R+H F +
Sbjct: 984  KLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFED 1043

Query: 567  GSCTCGD 573
            G C+CGD
Sbjct: 1044 GCCSCGD 1050



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 188/402 (46%), Gaps = 21/402 (5%)

Query: 37  NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSPL--SLNIFLSMLRHPTL 93
           N LI  Y K      + ++F+ +P  N+VSWTAL+S H  N  L  SL++F  M R    
Sbjct: 408 NYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQ--- 464

Query: 94  SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
              PN+ T ++  K C  L+ A   GL +H   LK+        G++LV  YS+    + 
Sbjct: 465 GIYPNEFTFSTNLKACGLLN-ALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINE 523

Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS--TMYCVSGALRAA 211
           A+KVF  +  R ++ + AMI G+        +L+ F  M+ + +      + ++  L+A 
Sbjct: 524 AEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKAC 583

Query: 212 AELAAMEQCRVIHGHAVVSGL--DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
           +    +   + IHG  V SG     +  +   L+D Y K G +  AR+ FD+ +     I
Sbjct: 584 SSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQ-IKEKTMI 642

Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
           +W++++ GYAQ+GD    + LF  L+      D +   +++    +  L  +  K ++ +
Sbjct: 643 SWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQG-KQMQAL 701

Query: 330 KVRYKLEPGLEHYT--CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
            V  KL  GLE      L+    + G +++AE+    M  + D   W  +++    HG  
Sbjct: 702 VV--KLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLK-DVISWTVMITGYGKHGLG 758

Query: 388 DMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEV 427
             A  +  +++  +I P D+  Y+ V +  S  G   E  E+
Sbjct: 759 KKAVSIFNKMLRHNIEP-DEVCYLAVLSACSHSGMIKEGEEL 799



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 9/155 (5%)

Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
           +SG   N+I    LID Y K      A +VFD ++   N ++W A+M+G+   GD +  L
Sbjct: 397 LSGSGLNLITSNYLIDMYCKCREQLIAYKVFD-SMPERNVVSWTALMSGHVLNGDLNGSL 455

Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
            LF  +  +G  P+E++F   L A C    A E    I    ++   E  +E    L+  
Sbjct: 456 SLFTEMGRQGIYPNEFTFSTNLKA-CGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDM 514

Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
             + GR+ +AE++   M       V R+L+S++A+
Sbjct: 515 YSKCGRINEAEKVFRWM-------VGRSLISWNAM 542


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 301/565 (53%), Gaps = 24/565 (4%)

Query: 19  RIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
           R +HA  +++   ++ SI   ++  Y K   L  + R+F+ +     V+ T L+  ++ +
Sbjct: 204 RQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQA 263

Query: 78  PLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
             +   L +F+ ++   T     +    + + K CASL    L G  +H+   KL L  +
Sbjct: 264 GRARDALKLFVDLV---TEGVEWDSFVFSVVLKACASLEELNL-GKQIHACVAKLGLESE 319

Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
              G+ LV FY +  S ++A + F EIRE + V + A+I G+ Q S+  +++  F  +RS
Sbjct: 320 VSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRS 379

Query: 195 SDVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
            +      +  +   +A + LA       +H  A+   L  +    + LI  Y K G + 
Sbjct: 380 KNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLD 439

Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
           DA  VF E++   + +AW A ++G+A  G+ S  L LF  +   G  P+  +F+AVLTA 
Sbjct: 440 DANEVF-ESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTAC 498

Query: 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV 373
            +AGL  + +  ++ M  +Y + P ++HY C+I    R+G L++A +    MPFEPDA  
Sbjct: 499 SHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMS 558

Query: 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
           W+  LS    H   ++    G+ L  ++P D + YV+  N+ +  G+W+E AE+ K+M +
Sbjct: 559 WKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNE 618

Query: 434 RRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHN 493
           R ++KE   SWI+ KGK+H F+ GD+ H +T++IY KL E        G++   +  +  
Sbjct: 619 RMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEFD------GFM---EGDMFQ 669

Query: 494 VGDREKREALWYHSEKLALAFGLVS---GAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
               E+RE L  HSE+LA+AFGL+S    AP    +++ KNLR C DCHE  K++S V  
Sbjct: 670 CNMTERREQLLDHSERLAIAFGLISVHGNAP--APIKVFKNLRACPDCHEFAKHVSLVTG 727

Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
            EIV+RD  R+H F  G C+C D W
Sbjct: 728 HEIVIRDSRRFHHFKEGKCSCNDYW 752



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 18/393 (4%)

Query: 35  IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
           + N ++  Y +   L  + +LF+ +   N VS T +ISA++   +   ++ +F  ML   
Sbjct: 120 LQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASG 179

Query: 92  TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
                P      +L K+  +   A  FG  +H+  ++  L       + +V+ Y +    
Sbjct: 180 DK---PPSSMYTTLLKSLVN-PRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWL 235

Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
             AK+VFD++  +  V    ++VG+ Q  R  D+L +F D+ +  V    +  S  L+A 
Sbjct: 236 VGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKAC 295

Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
           A L  +   + IH      GL+  V VGT L+D Y K      A R F E +   N ++W
Sbjct: 296 ASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQE-IREPNDVSW 354

Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAP-DEYSFLAVLTA---LCNAGLAGESEKWIE 327
           +A+++GY Q       ++ F  L  +  +  + +++ ++  A   L +  + G+    + 
Sbjct: 355 SAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQ----VH 410

Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
              ++  L       + LI+   + G L+DA  +  +M   PD   W A +S  A +G A
Sbjct: 411 ADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMD-NPDIVAWTAFISGHAYYGNA 469

Query: 388 DMASKMGKRLIDINPYDDS-AYVIVANVLSGVG 419
             A ++ ++++      +S  ++ V    S  G
Sbjct: 470 SEALRLFEKMVSCGMKPNSVTFIAVLTACSHAG 502



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 102/226 (45%), Gaps = 3/226 (1%)

Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
           +V  +++ +L ++     +M  + V  + Y       A  EL ++   R++H    +   
Sbjct: 55  LVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIE 114

Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
           + +V++   ++  Y +   + DA ++FDE +S LN+++   M++ YA+QG     + LF 
Sbjct: 115 NPSVLLQNCVLQMYCECRSLEDADKLFDE-MSELNAVSRTTMISAYAEQGILDKAVGLFS 173

Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
            +   G  P    +  +L +L N   A +  + I    +R  L       T +++   + 
Sbjct: 174 GMLASGDKPPSSMYTTLLKSLVNP-RALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKC 232

Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
           G L  A+R+   M  +   A    ++ ++   G+A  A K+   L+
Sbjct: 233 GWLVGAKRVFDQMAVKKPVACTGLMVGYTQA-GRARDALKLFVDLV 277


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 183/538 (34%), Positives = 285/538 (52%), Gaps = 41/538 (7%)

Query: 39  LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRHPTLSF 95
           L+  Y+K   +  +  + + +   ++V +TALI   S H     SL +F +M +      
Sbjct: 219 LVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKK---GI 275

Query: 96  LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
             N+ TL+S+   C +L      G  +H L +K  L                        
Sbjct: 276 EANEYTLSSVLVCCGNLED-LTSGRLIHGLIVKAGL------------------------ 310

Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
                      V + ++IVG  QN R   +L  F  M  S +    + +S  LRA + LA
Sbjct: 311 --------ESAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLA 362

Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
            +EQ + IH   +  GLD +  VG  LID YGK G    AR VF+  L V + ++ N+M+
Sbjct: 363 MLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEV-DVVSVNSMI 421

Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
             YAQ G     L+LF  ++  G  P+  ++L VL+A  NAGL  E        +    +
Sbjct: 422 YSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNI 481

Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
           E   +HY C++  +GRAGRL++AE +   +    D  +WR LLS   IHG  +MA ++  
Sbjct: 482 ELTKDHYACMVDLLGRAGRLKEAEMLINQVNIS-DVVIWRTLLSACRIHGDVEMAKRVMN 540

Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFL 455
           R+ID+ P D   +V+++N+ +  G W +V E++  M++ R++K    SW++V+ ++H F+
Sbjct: 541 RVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFM 600

Query: 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFG 515
           AGD  H    DI  KL EL+E+ + LGYVP    +L ++ + +K  +L+YHSEKLA+AF 
Sbjct: 601 AGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFA 660

Query: 516 LVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGD 573
           L     +  T+RI+KNLR+C DCH   K++S++V R+I+ RDV R+H F NG C+CGD
Sbjct: 661 LWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGD 718



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 161/361 (44%), Gaps = 43/361 (11%)

Query: 5   LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
           L QQ     + TD   + + ALK      S+ N LI  Y K   + Y+ ++F+ +P  +I
Sbjct: 84  LIQQCIGIKSITDITKIQSHALKRG-FHHSLGNKLIDAYLKCGSVVYARKVFDEVPHRHI 142

Query: 65  VSWTALISAH---SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121
           V+W ++I+++     S  +++I+  M+       LP++ T +S+FK  + L      G  
Sbjct: 143 VAWNSMIASYIRNGRSKEAIDIYQRMVPD---GILPDEFTFSSVFKAFSDLGLVHE-GQR 198

Query: 122 LHSLSLKLSLH-DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180
            H  S+ L +     F GSALV  Y++F    +A+ V D++  +DVV + A+IVG++ + 
Sbjct: 199 AHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHG 258

Query: 181 RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT 240
              +SL VF +M    + +  Y +S  L     L  +   R+IHG  V +GL+       
Sbjct: 259 EDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLE------- 311

Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
                                     +++ W +++ G  Q G +   L  F  +      
Sbjct: 312 --------------------------SAVTWTSVIVGLVQNGREEIALLKFRQMLRSSIT 345

Query: 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360
           P+ ++  +VL A C++    E  K I  + +++ L+        LI   G+ G  E A  
Sbjct: 346 PNSFTLSSVLRA-CSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARS 404

Query: 361 I 361
           +
Sbjct: 405 V 405


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,778,123,434
Number of Sequences: 23463169
Number of extensions: 356943282
Number of successful extensions: 1019128
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7456
Number of HSP's successfully gapped in prelim test: 3538
Number of HSP's that attempted gapping in prelim test: 891725
Number of HSP's gapped (non-prelim): 46001
length of query: 575
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 427
effective length of database: 8,886,646,355
effective search space: 3794597993585
effective search space used: 3794597993585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)