BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008183
(575 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/573 (35%), Positives = 333/573 (58%), Gaps = 20/573 (3%)
Query: 11 PQNTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
P+ S + VH A+K ++ +D + LI YS++ + + LF + ++V+W A
Sbjct: 430 PEGLSLSKQ-VHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNA 487
Query: 70 LISAHSNSP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLF----GLSL 122
+++ ++ S +L +F M + S + TLA++FKTC FLF G +
Sbjct: 488 MMAGYTQSHDGHKTLKLFALMHKQGERS---DDFTLATVFKTCG-----FLFAINQGKQV 539
Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL 182
H+ ++K + S ++ Y + A+ FD I D V + MI G +N
Sbjct: 540 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEE 599
Query: 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242
+ VF+ MR V + ++ +A++ L A+EQ R IH +A+ + VGT L
Sbjct: 600 ERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSL 659
Query: 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302
+D Y K G + DA +F + + ++N AWNAM+ G AQ G+ L+LF ++ G PD
Sbjct: 660 VDMYAKCGSIDDAYCLF-KRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPD 718
Query: 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
+ +F+ VL+A ++GL E+ K + M Y ++P +EHY+CL A+GRAG ++ AE +
Sbjct: 719 KVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLI 778
Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422
+M E A+++R LL+ + G + ++ +L+++ P D SAYV+++N+ + +WD
Sbjct: 779 ESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWD 838
Query: 423 EVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482
E+ R +MK +V+K+ G SWIEVK K+H+F+ DR + +TE IY K+ +++ + ++ G
Sbjct: 839 EMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEG 898
Query: 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESF 542
YVP D L +V + EK AL+YHSEKLA+AFGL+S P +R++KNLR+C DCH +
Sbjct: 899 YVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLS-TPPSTPIRVIKNLRVCGDCHNAM 957
Query: 543 KYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
KYI++V REIV+RD NR+HRF +G C+CGD W
Sbjct: 958 KYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 198/421 (47%), Gaps = 23/421 (5%)
Query: 21 VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
VH ALK ++ N+LI Y K ++ +F+++ +++SW ++I+ + + L
Sbjct: 337 VHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGL 396
Query: 80 SLN---IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
+ +F+ +LR P+Q T+ S+ K +SL +H ++K++ F
Sbjct: 397 EVEAVCLFMQLLR---CGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSF 453
Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
+AL+ YSR R A+ +F E D+V + AM+ G+ Q+ +L +FA M
Sbjct: 454 VSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQG 512
Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
S + ++ + L A+ Q + +H +A+ SG D ++ V +G++D Y K G +S A+
Sbjct: 513 ERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ 572
Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA-LCN 315
FD ++ V + +AW M++G + G++ +F + + G PDE++ + A C
Sbjct: 573 FAFD-SIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCL 631
Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA----ERIAMAMPFEPDA 371
L + +K+ +P + T L+ + G ++DA +RI M +
Sbjct: 632 TALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM-----NI 684
Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
W A+L A HG+ ++ K++ + D I VLS V+E K M
Sbjct: 685 TAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFI--GVLSACSHSGLVSEAYKHM 742
Query: 432 K 432
+
Sbjct: 743 R 743
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 141/290 (48%), Gaps = 11/290 (3%)
Query: 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFA 177
G +H ++LKL L ++L++ Y + R A+ VFD + ERD++ + ++I G A
Sbjct: 333 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIA 392
Query: 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA-AMEQCRVIHGHAVVSGLDRNV 236
QN V+++ +F + + Y ++ L+AA+ L + + +H HA+ +
Sbjct: 393 QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDS 452
Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
V T LID Y + + +A +F+ + + +AWNAMMAGY Q D L+LF L+
Sbjct: 453 FVSTALIDAYSRNRCMKEAEILFERH--NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHK 510
Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
+G D+++ LA + C A K + ++ + L + ++ + G +
Sbjct: 511 QGERSDDFT-LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 569
Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA----SKMGKRLIDINP 402
A+ ++P PD W ++S +G+ + A S+M RL+ + P
Sbjct: 570 AAQFAFDSIPV-PDDVAWTTMISGCIENGEEERAFHVFSQM--RLMGVLP 616
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 14 TSTD---PRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
TS+D + HAR L +R + NNLI+ YSK L+Y+ R+F+ +P ++VSW +
Sbjct: 51 TSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNS 110
Query: 70 LISAHSNSPLSL--NI-----FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSL 122
+++A++ S + NI +LR + ++ TL+ + K C + + S
Sbjct: 111 ILAAYAQSSECVVENIQQAFLLFRILRQDVV--YTSRMTLSPMLKLCLHSGYVWA-SESF 167
Query: 123 HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
H + K+ L F ALV+ Y +F K +F+E+ RDVV + M+ + +
Sbjct: 168 HGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLE 223
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 6/202 (2%)
Query: 110 ASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCY 169
A S + G H+ L + + F + L+ YS+ S A++VFD++ +RD+V +
Sbjct: 49 AITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSW 108
Query: 170 GAMIVGFAQNSRLV-----DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224
+++ +AQ+S V + +F +R V ++ +S L+ + H
Sbjct: 109 NSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFH 168
Query: 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQ 284
G+A GLD + V L++ Y K G V + + +F+E + + + WN M+ Y + G +
Sbjct: 169 GYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEE-MPYRDVVLWNLMLKAYLEMGFK 227
Query: 285 STVLELFHLLEMRGFAPDEYSF 306
++L G P+E +
Sbjct: 228 EEAIDLSSAFHSSGLNPNEITL 249
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 7/196 (3%)
Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245
L FADM SDV L A ++ ++ + +H A+ GLD + V LI+
Sbjct: 300 LKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINM 359
Query: 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305
Y K AR VFD N+S + I+WN+++AG AQ G + + LF L G PD+Y+
Sbjct: 360 YCKLRKFGFARTVFD-NMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYT 418
Query: 306 FLAVLTALCN--AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363
+VL A + GL+ + + +K+ + + T LI A R +++AE +
Sbjct: 419 MTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVS--TALIDAYSRNRCMKEAEILFE 476
Query: 364 AMPFEPDAAVWRALLS 379
F D W A+++
Sbjct: 477 RHNF--DLVAWNAMMA 490
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/579 (35%), Positives = 314/579 (54%), Gaps = 38/579 (6%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
D S +N +I + + + ++ F + +IV+W ++IS + +L+IF ML
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270
Query: 89 RHPTLSFLPNQRTLASLFKTCASL----------SHAFLFGLSLHSLSLKLSLHDKPFCG 138
R LS P++ TLAS+ CA+L SH G + + L + CG
Sbjct: 271 RDSLLS--PDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCG 328
Query: 139 ----------------------SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF 176
+AL+ Y + + AK +F +++RDVV + AMIVG+
Sbjct: 329 GVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGY 388
Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV 236
Q+ +++++F M Y ++ L A+ LA++ + IHG AV SG +V
Sbjct: 389 EQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSV 448
Query: 237 IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296
V LI Y KAG ++ A R FD ++++W +M+ AQ G LELF + M
Sbjct: 449 SVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLM 508
Query: 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356
G PD +++ V +A +AGL + ++ + MK K+ P L HY C++ GRAG L+
Sbjct: 509 EGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQ 568
Query: 357 DAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416
+A+ MP EPD W +LLS +H D+ +RL+ + P + AY +AN+ S
Sbjct: 569 EAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYS 628
Query: 417 GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELME 476
G+W+E A++RK MKD RV+KE G SWIEVK KVHVF D H +IY + ++ +
Sbjct: 629 ACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWD 688
Query: 477 ECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICR 536
E +++GYVP +LH++ + K + L +HSEKLA+AFGL+S P TLRI+KNLR+C
Sbjct: 689 EIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIS-TPDKTTLRIMKNLRVCN 747
Query: 537 DCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
DCH + K+IS++V REI+VRD R+H F +G C+C D W
Sbjct: 748 DCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/528 (22%), Positives = 212/528 (40%), Gaps = 103/528 (19%)
Query: 5 LNQQPQPQNTSTDPRIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSP 62
L + N ++VH R +KS S+Y NNL+ YSK+ ++ +LF+ +P
Sbjct: 20 LQKSVNKSNGRFTAQLVHCRVIKSGLM-FSVYLMNNLMNVYSKTGYALHARKLFDEMPLR 78
Query: 63 NIVSWTALISAHS---NSPLSLNIFLSMLRHPTLSFL----------------------- 96
SW ++SA+S + + F + + ++S+
Sbjct: 79 TAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMV 138
Query: 97 -----PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
P Q TL ++ + A+ + G +HS +KL L ++L++ Y++ P
Sbjct: 139 KEGIEPTQFTLTNVLASVAA-TRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDP 197
Query: 152 DNAKKVFD-------------------------------EIRERDVVCYGAMIVGFAQNS 180
AK VFD ++ ERD+V + +MI GF Q
Sbjct: 198 MMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRG 257
Query: 181 RLVDSLSVFADM-RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239
+ +L +F+ M R S + + ++ L A A L + + IH H V +G D + IV
Sbjct: 258 YDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVL 317
Query: 240 TGLIDGYGKAGIVSDARRVFDE--------------------------------NLSVLN 267
LI Y + G V ARR+ ++ +L +
Sbjct: 318 NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRD 377
Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
+AW AM+ GY Q G + LF + G P+ Y+ LA + ++ ++ + K I
Sbjct: 378 VVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYT-LAAMLSVASSLASLSHGKQIH 436
Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
V+ + LI+ +AG + A R + E D W +++ A HG A
Sbjct: 437 GSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 496
Query: 388 DMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433
+ A ++ + ++ + P D YV V + + G ++ + +MKD
Sbjct: 497 EEALELFETMLMEGLRP-DHITYVGVFSACTHAGLVNQGRQYFDMMKD 543
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/541 (34%), Positives = 307/541 (56%), Gaps = 4/541 (0%)
Query: 35 IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLS 94
+YN+L+ ++ +L+LF + + VSW A+I + + L+
Sbjct: 207 MYNSLMGGLLACGMIEDALQLFRGMEKDS-VSWAAMIKGLAQNGLAKEAIECFREMKVQG 265
Query: 95 FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154
+Q S+ C L A G +H+ ++ + D + GSAL+ Y + + A
Sbjct: 266 LKMDQYPFGSVLPACGGLG-AINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYA 324
Query: 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214
K VFD +++++VV + AM+VG+ Q R +++ +F DM+ S + Y + A+ A A +
Sbjct: 325 KTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANV 384
Query: 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAM 274
+++E+ HG A+ SGL V V L+ YGK G + D+ R+F+E ++V ++++W AM
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE-MNVRDAVSWTAM 443
Query: 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334
++ YAQ G ++LF + G PD + V++A AGL + +++ + M Y
Sbjct: 444 VSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYG 503
Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
+ P + HY+C+I R+GRLE+A R MPF PDA W LLS G ++
Sbjct: 504 IVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAA 563
Query: 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVF 454
+ LI+++P+ + Y +++++ + G+WD VA++R+ M+++ V+KE G+SWI+ KGK+H F
Sbjct: 564 ESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSF 623
Query: 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAF 514
A D + IY KL EL + GY P + H+V + K + L YHSE+LA+AF
Sbjct: 624 SADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAF 683
Query: 515 GLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDL 574
GL+ P G+ +R+ KNLR+C DCH + K+IS V REI+VRD R+HRF +G+C+CGD
Sbjct: 684 GLIF-VPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDF 742
Query: 575 W 575
W
Sbjct: 743 W 743
Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 122/473 (25%), Positives = 204/473 (43%), Gaps = 62/473 (13%)
Query: 9 PQPQNTSTDPRIVHARAL-KSSQADRSIY-----------NNLITNYSKSNLLSYSLRLF 56
P P+ T IVHA AL KSS R ++ NNL+ YSK+ L+S F
Sbjct: 37 PYPE-TFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTF 95
Query: 57 NHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
+P + V+W LI +S S L ++ + +M+R + + + TL ++ K +S
Sbjct: 96 EKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANL--TRVTLMTMLKLSSSNG 153
Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCY---- 169
H L G +H +KL GS L++ Y+ +AKKVF + +R+ V Y
Sbjct: 154 HVSL-GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLM 212
Query: 170 --------------------------GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
AMI G AQN +++ F +M+ + Y
Sbjct: 213 GGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYP 272
Query: 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENL 263
L A L A+ + + IH + + ++ VG+ LID Y K + A+ VFD +
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDR-M 331
Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
N ++W AM+ GY Q G +++F ++ G PD Y+ ++A N E
Sbjct: 332 KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGS 391
Query: 324 KWIERMKVRYKLEPGLEHYTC----LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
++ + + GL HY L++ G+ G ++D+ R+ M DA W A++S
Sbjct: 392 QFHGK-----AITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVS 445
Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
A G+A ++ +++ D V + V+S R V + ++ K
Sbjct: 446 AYAQFGRAVETIQLFDKMVQHGLKPDG--VTLTGVISACSRAGLVEKGQRYFK 496
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 122/273 (44%), Gaps = 41/273 (15%)
Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
+H ++ + + F + +VH Y+ +S A++VFD I + ++ + +++ +++
Sbjct: 28 IHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGL 87
Query: 182 LVDSLSVFADMRSSDVGSTM------YCVSGALRAAAE-----------------LAAME 218
+ + S F + D G T Y +SG + AA + L M
Sbjct: 88 ISEMESTFEKLPDRD-GVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTML 146
Query: 219 QC----------RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
+ + IHG + G + ++VG+ L+ Y G +SDA++VF L N+
Sbjct: 147 KLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVF-YGLDDRNT 205
Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
+ +N++M G G L+LF RG D S+ A++ L GLA E+ +
Sbjct: 206 VMYNSLMGGLLACGMIEDALQLF-----RGMEKDSVSWAAMIKGLAQNGLAKEAIECFRE 260
Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
MKV+ L+ + ++ A G G + + ++I
Sbjct: 261 MKVQ-GLKMDQYPFGSVLPACGGLGAINEGKQI 292
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 357 bits (916), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 196/544 (36%), Positives = 309/544 (56%), Gaps = 14/544 (2%)
Query: 35 IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
+ N LI Y K NLL+ + +LF+ +P N++SWT +ISA+S + +L + + MLR
Sbjct: 98 LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRD- 156
Query: 92 TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
+ PN T +S+ ++C +S + LH +K L F SAL+ +++ P
Sbjct: 157 --NVRPNVYTYSSVLRSCNGMSDVRM----LHCGIIKEGLESDVFVRSALIDVFAKLGEP 210
Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
++A VFDE+ D + + ++I GFAQNSR +L +F M+ + + ++ LRA
Sbjct: 211 EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC 270
Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
LA +E H H V D+++I+ L+D Y K G + DA RVF++ + + I W
Sbjct: 271 TGLALLELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLEDALRVFNQ-MKERDVITW 327
Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
+ M++G AQ G L+LF ++ G P+ + + VL A +AGL + + MK
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKK 387
Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
Y ++P EHY C+I +G+AG+L+DA ++ M EPDA WR LL + +A
Sbjct: 388 LYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAE 447
Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
K++I ++P D Y +++N+ + +WD V E+R M+DR ++KE G SWIEV ++
Sbjct: 448 YAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507
Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
H F+ GD H + ++ KL +L+ +GYVP + +L ++ + ++L +HSEKLA
Sbjct: 508 HAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLA 567
Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
LAFGL++ P K +RI KNLRIC DCH K S++ R IV+RD RYH F +G C+C
Sbjct: 568 LAFGLMT-LPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSC 626
Query: 572 GDLW 575
GD W
Sbjct: 627 GDYW 630
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 91/183 (49%), Gaps = 8/183 (4%)
Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
A+ + +I H +G + + LI+ Y K +++DA ++FD+ + N I+W M+
Sbjct: 76 AVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQ-MPQRNVISWTTMI 134
Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE-KWIERMKVRYK 334
+ Y++ LEL L+ P+ Y++ +VL + CN G S+ + + ++
Sbjct: 135 SAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS-CN----GMSDVRMLHCGIIKEG 189
Query: 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394
LE + + LI + G EDA + M DA VW +++ A + ++D+A ++
Sbjct: 190 LESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVALELF 248
Query: 395 KRL 397
KR+
Sbjct: 249 KRM 251
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 36/199 (18%)
Query: 22 HARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSL 81
H +K Q D + N L+ Y K L +LR+FN + ++++W+ +IS + + S
Sbjct: 283 HVHIVKYDQ-DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQ 341
Query: 82 NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSAL 141
R + PN T+ + C SHA L L D
Sbjct: 342 EALKLFERMKSSGTKPNYITIVGVLFAC---SHAGL-------------LEDG------- 378
Query: 142 VHFYSRFRSPDNAKKVF--DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
+ FRS KK++ D +RE YG MI + +L D++ + +M
Sbjct: 379 ---WYYFRS---MKKLYGIDPVREH----YGCMIDLLGKAGKLDDAVKLLNEMECEPDAV 428
Query: 200 TMYCVSGALRAAAELAAME 218
T + GA R + E
Sbjct: 429 TWRTLLGACRVQRNMVLAE 447
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 357 bits (916), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 199/561 (35%), Positives = 314/561 (55%), Gaps = 11/561 (1%)
Query: 19 RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-- 75
RIVHA L+S + D + N L+ Y+K L + ++F +P + V+WT LIS +S
Sbjct: 80 RIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQH 139
Query: 76 NSPL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
+ P +L F MLR + PN+ TL+S+ K A+ G LH +K
Sbjct: 140 DRPCDALLFFNQMLR---FGYSPNEFTLSSVIKAAAAERRGCC-GHQLHGFCVKCGFDSN 195
Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
GSAL+ Y+R+ D+A+ VFD + R+ V + A+I G A+ S +L +F M
Sbjct: 196 VHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLR 255
Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
+ + + A + +EQ + +H + + SG G L+D Y K+G + D
Sbjct: 256 DGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHD 315
Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
AR++FD L+ + ++WN+++ YAQ G + F + G P+E SFL+VLTA
Sbjct: 316 ARKIFDR-LAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACS 374
Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
++GL E + E MK + + P HY ++ +GRAG L A R MP EP AA+W
Sbjct: 375 HSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIW 433
Query: 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434
+ALL+ +H ++ + + + +++P D +VI+ N+ + GRW++ A VRK MK+
Sbjct: 434 KALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKES 493
Query: 435 RVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV 494
V+KE SW+E++ +H+F+A D H + E+I K E++ + + LGYVP ++ +V
Sbjct: 494 GVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHV 553
Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
+E+ L YHSEK+ALAF L++ P G T+ I KN+R+C DCH + K S+VV REI+
Sbjct: 554 DQQEREVNLQYHSEKIALAFALLNTPP-GSTIHIKKNIRVCGDCHTAIKLASKVVGREII 612
Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
VRD NR+H F +G+C+C D W
Sbjct: 613 VRDTNRFHHFKDGNCSCKDYW 633
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 170/344 (49%), Gaps = 12/344 (3%)
Query: 94 SFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
S++P ++R +L K C ++ + G +H+ L+ G+ L++ Y++ S +
Sbjct: 54 SYIPADRRFYNTLLKKC-TVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLE 112
Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
A+KVF+++ +RD V + +I G++Q+ R D+L F M + +S ++AAA
Sbjct: 113 EARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172
Query: 213 ELAAMEQC--RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA 270
A C +HG V G D NV VG+ L+D Y + G++ DA+ VFD L N ++
Sbjct: 173 --AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDA-LESRNDVS 229
Query: 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK 330
WNA++AG+A++ LELF + GF P +S+ ++ A + G E KW+
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFL-EQGKWVHAYM 288
Query: 331 VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
++ + L+ ++G + DA +I + + D W +LL+ A HG A
Sbjct: 289 IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHGFGKEA 347
Query: 391 SKMGK--RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
+ R + I P ++ +++ V S G DE ++MK
Sbjct: 348 VWWFEEMRRVGIRP-NEISFLSVLTACSHSGLLDEGWHYYELMK 390
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 96/204 (47%), Gaps = 5/204 (2%)
Query: 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235
F N L+ + S D+ S + + + L+ + Q R++H H + S +
Sbjct: 37 FPSNDLLLRTSS--NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHD 94
Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
+++G L++ Y K G + +AR+VF E + + + W +++GY+Q L F+ +
Sbjct: 95 IVMGNTLLNMYAKCGSLEEARKVF-EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153
Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
G++P+E++ +V+ A A G + V+ + + + L+ R G +
Sbjct: 154 RFGYSPNEFTLSSVIKAAA-AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLM 212
Query: 356 EDAERIAMAMPFEPDAAVWRALLS 379
+DA+ + A+ D + W AL++
Sbjct: 213 DDAQLVFDALESRNDVS-WNALIA 235
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 353 bits (907), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 197/559 (35%), Positives = 306/559 (54%), Gaps = 7/559 (1%)
Query: 21 VHARALKSSQADRSIYNNLI---TNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
+ A A+KS D S LI T + +SY+ LF + P+IV + ++ +S
Sbjct: 48 IQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRF 107
Query: 78 PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
L +F + LP+ T SL K CA ++ A G LH LS+KL L D +
Sbjct: 108 TNPLEVFSLFVEILEDGILPDNYTFPSLLKACA-VAKALEEGRQLHCLSMKLGLDDNVYV 166
Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
L++ Y+ D+A+ VFD I E VVCY AMI G+A+ +R ++LS+F +M+ +
Sbjct: 167 CPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYL 226
Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
+ L + A L +++ + IH +A + V V T LID + K G + DA
Sbjct: 227 KPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVS 286
Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
+F E + ++ AW+AM+ YA G + +F + PDE +FL +L A + G
Sbjct: 287 IF-EKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345
Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
E K+ +M ++ + P ++HY ++ + RAG LEDA +P P +WR L
Sbjct: 346 RVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRIL 405
Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
L+ + H D+A K+ +R+ +++ YVI++N+ + +W+ V +RKVMKDR+
Sbjct: 406 LAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAV 465
Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH-NVGD 496
K G S IEV VH F +GD + T ++ L E+++E + GYVP ++H N+ D
Sbjct: 466 KVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMND 525
Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
+EK L YHSEKLA+ FGL++ P G T+R+VKNLR+CRDCH + K IS + R++V+R
Sbjct: 526 QEKEITLRYHSEKLAITFGLLNTPP-GTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLR 584
Query: 557 DVNRYHRFLNGSCTCGDLW 575
DV R+H F +G C+CGD W
Sbjct: 585 DVQRFHHFEDGKCSCGDFW 603
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 351 bits (900), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 190/556 (34%), Positives = 308/556 (55%), Gaps = 3/556 (0%)
Query: 21 VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
VH + LK+ D + L+ Y++ +S + ++FN +P ++V W+ +I+ +
Sbjct: 269 VHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGF 328
Query: 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
+R +PN+ TL+S+ CA + G LH L +K+ + +
Sbjct: 329 CNEAVDLFIRMREAFVVPNEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDIYVSN 387
Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
AL+ Y++ D A K+F E+ ++ V + +IVG+ + S+F + + V
Sbjct: 388 ALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSV 447
Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
T S AL A A LA+M+ +HG A+ + + V V LID Y K G + A+ VF
Sbjct: 448 TEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVF 507
Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
+E + ++ +WNA+++GY+ G L + +++ R P+ +FL VL+ NAGL
Sbjct: 508 NE-METIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLI 566
Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
+ ++ E M + +EP LEHYTC++ +GR+G+L+ A ++ +P+EP +WRA+LS
Sbjct: 567 DQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLS 626
Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
S + A + + ++ INP D++ YV+V+N+ +G +W VA +RK MK+ V+KE
Sbjct: 627 ASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKE 686
Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK 499
G SWIE +G VH F G H + I L L + R GYVP + +L ++ D EK
Sbjct: 687 PGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEK 746
Query: 500 REALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVN 559
+ LW HSE+LALA+GLV + I+KNLRIC DCH + K IS +V+R++V+RD+N
Sbjct: 747 DKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMN 806
Query: 560 RYHRFLNGSCTCGDLW 575
R+H F G C+CGD W
Sbjct: 807 RFHHFHAGVCSCGDHW 822
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 160/352 (45%), Gaps = 10/352 (2%)
Query: 12 QNTSTDPRIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
+N + +H LK S D N L+ Y K+ +L LF+ +P N VS+ L
Sbjct: 62 KNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTL 121
Query: 71 ISAHS-NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
++ P+ L L H N S K SL A + LHS +KL
Sbjct: 122 AQGYACQDPIGLYSRLHREGHEL-----NPHVFTSFLKLFVSLDKAEICPW-LHSPIVKL 175
Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
F G+AL++ YS S D+A+ VF+ I +D+V + ++ + +N DSL +
Sbjct: 176 GYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLL 235
Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
+ MR + Y AL+A+ L A + + +HG + + + VG GL+ Y +
Sbjct: 236 SCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQL 295
Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
G +SDA +VF+E + + + W+ M+A + Q G + ++LF + P+E++ ++
Sbjct: 296 GDMSDAFKVFNE-MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSI 354
Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
L +G E+ + + V+ + + LI + +++ A ++
Sbjct: 355 LNGCAIGKCSGLGEQ-LHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKL 405
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 190/563 (33%), Positives = 306/563 (54%), Gaps = 19/563 (3%)
Query: 29 SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNSPLSLNIF 84
S D +N ++ YS+ ++RLF + I V+W+A IS ++ L
Sbjct: 291 SVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350
Query: 85 LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-------DKPFC 137
+ + PN+ TL S+ CAS+ A + G +H ++K + D+
Sbjct: 351 GVCRQMLSSGIKPNEVTLISVLSGCASVG-ALMHGKEIHCYAIKYPIDLRKNGHGDENMV 409
Query: 138 GSALVHFYSRFRSPDNAKKVFDEI--RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
+ L+ Y++ + D A+ +FD + +ERDVV + MI G++Q+ +L + ++M
Sbjct: 410 INQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469
Query: 196 DVGS--TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR-NVIVGTGLIDGYGKAGIV 252
D + + +S AL A A LAA+ + IH +A+ + + + V LID Y K G +
Sbjct: 470 DCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529
Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
SDAR VFD N+ N + W ++M GY G L +F + GF D + L VL A
Sbjct: 530 SDARLVFD-NMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYA 588
Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
++G+ + ++ RMK + + PG EHY CL+ +GRAGRL A R+ MP EP
Sbjct: 589 CSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPV 648
Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
VW A LS IHGK ++ +++ ++ D +Y +++N+ + GRW +V +R +M+
Sbjct: 649 VWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMR 708
Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
+ V+K G SW+E F GD+ H ++IY L + M+ + +GYVP LH
Sbjct: 709 HKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALH 768
Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
+V D EK + L+ HSEKLALA+G+++ P+G +RI KNLR+C DCH +F Y+SR+++ +
Sbjct: 769 DVDDEEKDDLLFEHSEKLALAYGILT-TPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHD 827
Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
I++RD +R+H F NGSC+C W
Sbjct: 828 IILRDSSRFHHFKNGSCSCKGYW 850
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 162/314 (51%), Gaps = 9/314 (2%)
Query: 14 TSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN--IVSWTALI 71
T + +++H + L ++ ++LI+ Y LS+++ L P + + W +LI
Sbjct: 40 TISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLI 99
Query: 72 SAHS-NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
++ N + ++L L H +LS+ P+ T +FK C +S + G S H+LSL
Sbjct: 100 RSYGDNGCANKCLYLFGLMH-SLSWTPDNYTFPFVFKACGEIS-SVRCGESAHALSLVTG 157
Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
F G+ALV YSR RS +A+KVFDE+ DVV + ++I +A+ + +L +F+
Sbjct: 158 FISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFS 217
Query: 191 DMRSSDVGSTMYCVS--GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
M +++ G ++ L A L + +H AV S + +N+ VG L+D Y K
Sbjct: 218 RM-TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAK 276
Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
G++ +A VF N+SV + ++WNAM+AGY+Q G + LF ++ D ++ A
Sbjct: 277 CGMMDEANTVF-SNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSA 335
Query: 309 VLTALCNAGLAGES 322
++ GL E+
Sbjct: 336 AISGYAQRGLGYEA 349
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 110/448 (24%), Positives = 184/448 (41%), Gaps = 59/448 (13%)
Query: 37 NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPTL 93
N L+ YS+ LS + ++F+ + ++VSW ++I +++ ++L +F M
Sbjct: 166 NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE--F 223
Query: 94 SFLPNQRTLASLFKTCASL-SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
P+ TL ++ CASL +H+ G LH ++ + F G+ LV Y++ D
Sbjct: 224 GCRPDNITLVNVLPPCASLGTHSL--GKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMD 281
Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS----DVGSTMYCVSGAL 208
A VF + +DVV + AM+ G++Q R D++ +F M+ DV + +SG
Sbjct: 282 EANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYA 341
Query: 209 RAAAELAAMEQCR----------------VIHGHAVVSGL-------------------- 232
+ A+ CR V+ G A V L
Sbjct: 342 QRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKN 401
Query: 233 ---DRNVIVGTGLIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVL 288
D N+++ LID Y K V AR +FD + + + W M+ GY+Q GD + L
Sbjct: 402 GHGDENMVINQ-LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKAL 460
Query: 289 ELFHLL--EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCL 345
EL + E P+ ++ L A C + A K I +R + L CL
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVA-CASLAALRIGKQIHAYALRNQQNAVPLFVSNCL 519
Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYD 404
I + G + DA R+ + W +L++ +HG + A + + I D
Sbjct: 520 IDMYAKCGSISDA-RLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLD 578
Query: 405 DSAYVIVANVLSGVGRWDEVAEVRKVMK 432
++V S G D+ E MK
Sbjct: 579 GVTLLVVLYACSHSGMIDQGMEYFNRMK 606
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 21 VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HS 75
+HA AL++ Q ++ N LI Y+K +S + +F+++ + N V+WT+L++ H
Sbjct: 499 IHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHG 558
Query: 76 NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
+L IF M R + F + TL + C+
Sbjct: 559 YGEEALGIFDEMRR---IGFKLDGVTLLVVLYACS 590
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 194/550 (35%), Positives = 303/550 (55%), Gaps = 16/550 (2%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA---HSNSPLSLNIFLSM 87
D++I L+ YSK + +LRLF I N+VSWTA+IS + ++++F M
Sbjct: 329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEM 388
Query: 88 LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
R PN+ T + + +S + +H+ +K + G+AL+ Y +
Sbjct: 389 KRK---GVRPNEFTYSVILTALPVISPS-----EVHAQVVKTNYERSSTVGTALLDAYVK 440
Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
+ A KVF I ++D+V + AM+ G+AQ ++ +F ++ + + S
Sbjct: 441 LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSI 500
Query: 208 LRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
L AA A+M Q + HG A+ S LD ++ V + L+ Y K G + A VF
Sbjct: 501 LNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK- 559
Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
+ ++WN+M++GYAQ G L++F ++ R D +F+ V A +AGL E EK+
Sbjct: 560 DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYF 619
Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
+ M K+ P EH +C++ RAG+LE A ++ MP + +WR +L+ +H K
Sbjct: 620 DIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKK 679
Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
++ +++I + P D +AYV+++N+ + G W E A+VRK+M +R V+KE G SWIE
Sbjct: 680 TELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIE 739
Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
VK K + FLAGDR H + IY KL +L + LGY P +L ++ D K L H
Sbjct: 740 VKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQH 799
Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRF-L 565
SE+LA+AFGL++ P+G L I+KNLR+C DCH K I+++ EREIVVRD NR+H F
Sbjct: 800 SERLAIAFGLIA-TPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSS 858
Query: 566 NGSCTCGDLW 575
+G C+CGD W
Sbjct: 859 DGVCSCGDFW 868
Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 181/376 (48%), Gaps = 8/376 (2%)
Query: 19 RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
R +H + +K D S+ +L+ Y K + ++F+ + N+V+WT LIS ++ +
Sbjct: 113 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARN 172
Query: 78 PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
++ + +R PN T A+ A GL +H++ +K L
Sbjct: 173 SMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGR-GLQVHTVVVKNGLDKTIPV 231
Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
++L++ Y + + A+ +FD+ + VV + +MI G+A N +++L +F MR + V
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291
Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
+ + ++ A L + +H V G + + T L+ Y K + DA R
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351
Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
+F E V N ++W AM++G+ Q + ++LF ++ +G P+E+++ +LTAL
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL---P 408
Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
+ SE + +K Y+ + T L+ A + G++E+A ++ + + D W A+
Sbjct: 409 VISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAM 465
Query: 378 LSFSAIHGKADMASKM 393
L+ A G+ + A KM
Sbjct: 466 LAGYAQTGETEAAIKM 481
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 19/372 (5%)
Query: 55 LFNHIPSPNIVSWTALISAHSN---SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
LF+ P + S+ +L+ S + + +FL++ R L + +S+ K A+
Sbjct: 49 LFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHR---LGMEMDCSIFSSVLKVSAT 105
Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
L LFG LH +K D G++LV Y + + + +KVFDE++ER+VV +
Sbjct: 106 LCDE-LFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTT 164
Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
+I G+A+NS + L++F M++ + + AL AE + +H V +G
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224
Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
LD+ + V LI+ Y K G V AR +FD+ V + + WN+M++GYA G L +F
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKT-EVKSVVTWNSMISGYAANGLDLEALGMF 283
Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK---VRYKLEPGLEHYTCLISA 348
+ + + E SF +V+ N + ++ E++ V+Y T L+ A
Sbjct: 284 YSMRLNYVRLSESSFASVIKLCANL----KELRFTEQLHCSVVKYGFLFDQNIRTALMVA 339
Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLS-FSAIHGK---ADMASKMGKRLIDINPYD 404
+ + DA R+ + + W A++S F GK D+ S+M ++ + N +
Sbjct: 340 YSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399
Query: 405 DSAYVIVANVLS 416
S + V+S
Sbjct: 400 YSVILTALPVIS 411
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/522 (33%), Positives = 302/522 (57%), Gaps = 3/522 (0%)
Query: 54 RLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
R+F +P ++VS+ +I+ ++ S + + + T P+ TL+S+ +
Sbjct: 197 RVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYV 256
Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
+ G +H ++ + + GS+LV Y++ +++++VF + RD + + +++
Sbjct: 257 DV-IKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315
Query: 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233
G+ QN R ++L +F M ++ V S + A A LA + + +HG+ + G
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375
Query: 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293
N+ + + L+D Y K G + AR++FD ++VL+ ++W A++ G+A G + LF
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDR-MNVLDEVSWTAIIMGHALHGHGHEAVSLFEE 434
Query: 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG 353
++ +G P++ +F+AVLTA + GL E+ + M Y L LEHY + +GRAG
Sbjct: 435 MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAG 494
Query: 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413
+LE+A M EP +VW LLS ++H ++A K+ +++ ++ + AYV++ N
Sbjct: 495 KLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCN 554
Query: 414 VLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAE 473
+ + GRW E+A++R M+ + +RK+ SWIE+K K H F++GDR H + I L
Sbjct: 555 MYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKA 614
Query: 474 LMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLR 533
+ME+ E+ GYV +LH+V + KRE L+ HSE+LA+AFG+++ P G T+R+ KN+R
Sbjct: 615 VMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEP-GTTIRVTKNIR 673
Query: 534 ICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
IC DCH + K+IS++ EREI+VRD +R+H F G+C+CGD W
Sbjct: 674 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/457 (22%), Positives = 202/457 (44%), Gaps = 43/457 (9%)
Query: 5 LNQQPQPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI 64
L + P + + + +HA+ +++ + + +I+ Y+ LL +L LF + SP +
Sbjct: 11 LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPV 70
Query: 65 VSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
++W ++I ++ L S + P+ S+ K+C ++ FG S+H
Sbjct: 71 LAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSC-TMMMDLRFGESVHG 129
Query: 125 LSLKLSLHDKPFCGSALVHFYSRF--------------RSP------------------- 151
++L + + G+AL++ Y++ P
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189
Query: 152 ---DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
D+ ++VF+ + +DVV Y +I G+AQ+ D+L + +M ++D+ + +S L
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
+E + + + IHG+ + G+D +V +G+ L+D Y K+ + D+ RVF L +
Sbjct: 250 PIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSR-LYCRDG 308
Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
I+WN+++AGY Q G + L LF + P +F +V+ A C K +
Sbjct: 309 ISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPA-CAHLATLHLGKQLHG 367
Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
+R + + L+ + G ++ A +I M D W A++ A+HG
Sbjct: 368 YVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALHGHGH 426
Query: 389 MASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDE 423
A + + + + P + A+V V S VG DE
Sbjct: 427 EAVSLFEEMKRQGVKP-NQVAFVAVLTACSHVGLVDE 462
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 139/313 (44%), Gaps = 15/313 (4%)
Query: 27 KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNI 83
K +D I ++L+ Y+KS + S R+F+ + + +SW +L++ + + +L +
Sbjct: 271 KGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRL 330
Query: 84 FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
F M+ T P +S+ CA L+ L G LH L+ F SALV
Sbjct: 331 FRQMV---TAKVKPGAVAFSSVIPACAHLATLHL-GKQLHGYVLRGGFGSNIFIASALVD 386
Query: 144 FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203
YS+ + A+K+FD + D V + A+I+G A + +++S+F +M+ V
Sbjct: 387 MYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVA 446
Query: 204 VSGALRAAAELAAMEQC-RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262
L A + + +++ + V GL++ + + D G+AG + +A +
Sbjct: 447 FVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKM 506
Query: 263 LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322
W+ +++ + + LEL + + F D + + +CN + +
Sbjct: 507 CVEPTGSVWSTLLSSCSVHKN----LELAEKVAEKIFTVDSEN-MGAYVLMCN--MYASN 559
Query: 323 EKWIERMKVRYKL 335
+W E K+R ++
Sbjct: 560 GRWKEMAKLRLRM 572
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 349 bits (895), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 203/624 (32%), Positives = 321/624 (51%), Gaps = 62/624 (9%)
Query: 9 PQPQNTST--DPRIVHARALKSSQADRSIYNNLITNY-SKSNL----LSYSLRLFNHIPS 61
PQ N T D +HA +KS Q ++ I + + S+L L Y+ ++FN +P
Sbjct: 28 PQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQ 87
Query: 62 PNIVSWTALISAHSNSP-----LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAF 116
N SW +I S S +++ +F M+ + PN+ T S+ K CA +
Sbjct: 88 RNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVE--PNRFTFPSVLKACAK-TGKI 144
Query: 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFY------------------------------- 145
G +H L+LK F S LV Y
Sbjct: 145 QEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204
Query: 146 --------------SRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
R A+ +FD++R+R VV + MI G++ N D++ VF +
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264
Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
M+ D+ + L A + L ++E +H +A SG+ + ++G+ LID Y K GI
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 324
Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
+ A VF E L N I W+AM+ G+A G ++ F + G P + +++ +LT
Sbjct: 325 IEKAIHVF-ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
A + GL E ++ +M LEP +EHY C++ +GR+G L++AE + MP +PD
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
+W+ALL + G +M ++ L+D+ P+D AYV ++N+ + G W EV+E+R M
Sbjct: 444 VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRM 503
Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
K++ +RK+ G S I++ G +H F+ D H + ++I + L E+ ++ GY P+ ++L
Sbjct: 504 KEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVL 563
Query: 492 HNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVER 551
N+ + +K L YHSEK+A AFGL+S +P GK +RIVKNLRIC DCH S K IS+V +R
Sbjct: 564 LNLEEEDKENVLHYHSEKIATAFGLISTSP-GKPIRIVKNLRICEDCHSSIKLISKVYKR 622
Query: 552 EIVVRDVNRYHRFLNGSCTCGDLW 575
+I VRD R+H F +GSC+C D W
Sbjct: 623 KITVRDRKRFHHFQDGSCSCMDYW 646
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 204/568 (35%), Positives = 311/568 (54%), Gaps = 14/568 (2%)
Query: 18 PRI-----VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
PR+ VHA + + RS+ LIT + ++Y+ LF +P P+ + ++I
Sbjct: 20 PRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVI 79
Query: 72 SAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
+ S L L+ R + + P+ T S+ K+CA LS A G +H ++
Sbjct: 80 KSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLS-ALRIGKGVHCHAVVSGF 138
Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFAD 191
+ +ALV FYS+ + A++VFD + E+ +V + +++ GF QN +++ VF
Sbjct: 139 GLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQ 198
Query: 192 MRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251
MR S L A A+ A+ +H + + GLD NV +GT LI+ Y + G
Sbjct: 199 MRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGD 258
Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVL 310
V AR VFD+ + N AW AM++ Y G +ELF+ +E G P+ +F+AVL
Sbjct: 259 VGKAREVFDK-MKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVL 317
Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
+A +AGL E +RM Y+L PG+EH+ C++ +GRAG L++A + +
Sbjct: 318 SACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGK 377
Query: 371 A---AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
A A+W A+L +H D+ ++ KRLI + P + +V+++N+ + G+ DEV+ +
Sbjct: 378 ATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHI 437
Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
R M +RK+ G S IEV+ K ++F GD H+ T +IY L L+ C+ +GY PV
Sbjct: 438 RDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVS 497
Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
+E++H V + EK AL YHSEKLA+AFGL+ T IVKNLRIC DCH +FKYIS
Sbjct: 498 EEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVDVAIT--IVKNLRICEDCHSAFKYISI 555
Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
V R+I VRD R+H F NGSC+C D W
Sbjct: 556 VSNRQITVRDKLRFHHFQNGSCSCLDYW 583
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 198/565 (35%), Positives = 314/565 (55%), Gaps = 12/565 (2%)
Query: 17 DPRIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS 75
D + VHA +K+ + + L+ Y K + L + ++ + +P N+VSWTA+IS +S
Sbjct: 70 DGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYS 129
Query: 76 ---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
+S +L +F M+R PN+ T A++ +C S G +H L +K +
Sbjct: 130 QTGHSSEALTVFAEMMRSDGK---PNEFTFATVLTSCIRAS-GLGLGKQIHGLIVKWNYD 185
Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
F GS+L+ Y++ A+++F+ + ERDVV A+I G+AQ ++L +F +
Sbjct: 186 SHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL 245
Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
S + + L A + LA ++ + H H + L ++ LID Y K G +
Sbjct: 246 HSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNL 305
Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLT 311
S ARR+FD N+ +I+WNAM+ GY++ G VLELF L+ + + PD + LAVL+
Sbjct: 306 SYARRLFD-NMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLS 364
Query: 312 ALCNAGLAGESEKWIERMKV-RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
+ + + M Y +PG EHY C++ +GRAGR+++A MP +P
Sbjct: 365 GCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPT 424
Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430
A V +LL +H D+ +G+RLI+I P + YVI++N+ + GRW +V VR +
Sbjct: 425 AGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAM 484
Query: 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEM 490
M + V KE GRSWI+ + +H F A DR H R E++ K+ E+ + ++ GYVP +
Sbjct: 485 MMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCV 544
Query: 491 LHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVE 550
L++V + +K + L HSEKLAL FGL++ G +R+ KNLRIC DCH K S+V E
Sbjct: 545 LYDVDEEQKEKMLLGHSEKLALTFGLIATG-EGIPIRVFKNLRICVDCHNFAKIFSKVFE 603
Query: 551 REIVVRDVNRYHRFLNGSCTCGDLW 575
RE+ +RD NR+H+ ++G C+CGD W
Sbjct: 604 REVSLRDKNRFHQIVDGICSCGDYW 628
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 6/225 (2%)
Query: 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL 232
I N RL ++L A M ++G Y L A + A+ + +H H + +
Sbjct: 27 ISQLCSNGRLQEALLEMA-MLGPEMGFHGY--DALLNACLDKRALRDGQRVHAHMIKTRY 83
Query: 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292
+ T L+ YGK + DAR+V DE + N ++W AM++ Y+Q G S L +F
Sbjct: 84 LPATYLRTRLLIFYGKCDCLEDARKVLDE-MPEKNVVSWTAMISRYSQTGHSSEALTVFA 142
Query: 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352
+ P+E++F VLT+ A G K I + V++ + + + L+ +A
Sbjct: 143 EMMRSDGKPNEFTFATVLTSCIRASGLGLG-KQIHGLIVKWNYDSHIFVGSSLLDMYAKA 201
Query: 353 GRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
G++++A I +P E D A+++ A G + A +M RL
Sbjct: 202 GQIKEAREIFECLP-ERDVVSCTAIIAGYAQLGLDEEALEMFHRL 245
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 346 bits (888), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 184/548 (33%), Positives = 306/548 (55%), Gaps = 10/548 (1%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSML 88
D S+ N ++ YSK + + + LF+ +P + VS+ +IS++S + SL+ F M
Sbjct: 284 DASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM- 342
Query: 89 RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
+ F A++ A+LS + G LH +L + G++LV Y++
Sbjct: 343 --QCMGFDRRNFPFATMLSIAANLS-SLQMGRQLHCQALLATADSILHVGNSLVDMYAKC 399
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
+ A+ +F + +R V + A+I G+ Q L +F MR S++ + + L
Sbjct: 400 EMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVL 459
Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
+A+A A++ + +H + SG NV G+GL+D Y K G + DA +VF+E + N+
Sbjct: 460 KASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEE-MPDRNA 518
Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
++WNA+++ +A GD + F + G PD S L VLTA + G + ++ +
Sbjct: 519 VSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQA 578
Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
M Y + P +HY C++ +GR GR +AE++ MPFEPD +W ++L+ IH
Sbjct: 579 MSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQS 638
Query: 389 MASKMGKRLIDINPY-DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
+A + ++L + D +AYV ++N+ + G W++V +V+K M++R ++K SW+EV
Sbjct: 639 LAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEV 698
Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
K+HVF + D+ H ++I K+ EL E ER GY P ++ +V ++ K E+L YHS
Sbjct: 699 NHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHS 758
Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
E+LA+AF L+S P G + ++KNLR CRDCH + K IS++V+REI VRD +R+H F G
Sbjct: 759 ERLAVAFALIS-TPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEG 817
Query: 568 SCTCGDLW 575
C+CGD W
Sbjct: 818 VCSCGDYW 825
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/430 (25%), Positives = 196/430 (45%), Gaps = 21/430 (4%)
Query: 11 PQNTSTDPRIVHARALK---SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSW 67
PQN VHA A+K + ++ N L+ +Y + L + LF IP + V++
Sbjct: 162 PQNAVGQ---VHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTF 218
Query: 68 TALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHS 124
LI+ + L S+++FL M + P+ T + + K L H F G LH+
Sbjct: 219 NTLITGYEKDGLYTESIHLFLKMRQS---GHQPSDFTFSGVLKAVVGL-HDFALGQQLHA 274
Query: 125 LSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184
LS+ G+ ++ FYS+ + +FDE+ E D V Y +I ++Q +
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334
Query: 185 SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
SL F +M+ + + L AA L++++ R +H A+++ D + VG L+D
Sbjct: 335 SLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVD 394
Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
Y K + +A +F ++L +++W A+++GY Q+G L+LF + D+
Sbjct: 395 MYAKCEMFEEAELIF-KSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQS 453
Query: 305 SFLAVLTALCNAG--LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362
+F VL A + L G K + +R + + L+ + G ++DA ++
Sbjct: 454 TFATVLKASASFASLLLG---KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVF 510
Query: 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI-VANVLSGVGRW 421
MP + +A W AL+S A +G + A ++I+ DS ++ V S G
Sbjct: 511 EEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFV 569
Query: 422 DEVAEVRKVM 431
++ E + M
Sbjct: 570 EQGTEYFQAM 579
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 161/348 (46%), Gaps = 10/348 (2%)
Query: 37 NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRHPTL 93
N +I+ + K+ +S + LF+ +P +V+WT L+ + +S+ + +F M R +
Sbjct: 83 NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142
Query: 94 SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF--CGSALVHFYSRFRSP 151
+ LP+ T +L C G +H+ ++KL PF + L+ Y R
Sbjct: 143 T-LPDHVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRL 200
Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
D A +F+EI E+D V + +I G+ ++ +S+ +F MR S + + SG L+A
Sbjct: 201 DLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV 260
Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
L + +H +V +G R+ VG ++D Y K V + R +FDE + L+ +++
Sbjct: 261 VGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDE-MPELDFVSY 319
Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
N +++ Y+Q L F ++ GF + F +L+ N + + + + +
Sbjct: 320 NVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLS-SLQMGRQLHCQAL 378
Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
+ L L+ + E+AE I ++P + W AL+S
Sbjct: 379 LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTALIS 425
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 201 MYCVSGALRAAAELAAMEQCRV-----------IHGHAVVSGLDRNVIVGTGLIDGYGKA 249
+YC S +R+ LA + Q R + + +G D + +++ +
Sbjct: 3 LYCNSNEVRSRT-LATLRQLRQPSPATFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRR 61
Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297
G VS AR+V+DE + N+++ N M++G+ + GD S+ +LF + R
Sbjct: 62 GQVSAARKVYDE-MPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDR 108
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 346 bits (887), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 190/558 (34%), Positives = 298/558 (53%), Gaps = 6/558 (1%)
Query: 21 VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
+HA A+K + D + + Y K+ L + +LF+ IP N+ +W A IS
Sbjct: 130 IHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGR 189
Query: 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
+ + + PN T + C+ H L G+ LH L L+ +
Sbjct: 190 PREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNL-GMQLHGLVLRSGFDTDVSVCN 248
Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
L+ FY + + +++ +F E+ ++ V + +++ + QN + ++ R V +
Sbjct: 249 GLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVET 308
Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
+ + +S L A A +A +E R IH HAV + ++R + VG+ L+D YGK G + D+ + F
Sbjct: 309 SDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAF 368
Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP--DEYSFLAVLTALCNAG 317
DE + N + N+++ GYA QG L LF + RG P + +F+++L+A AG
Sbjct: 369 DE-MPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 427
Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
K + M+ Y +EPG EHY+C++ +GRAG +E A MP +P +VW AL
Sbjct: 428 AVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 487
Query: 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437
+ +HGK + + L ++P D +V+++N + GRW E VR+ +K ++
Sbjct: 488 QNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIK 547
Query: 438 KEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDR 497
K G SWI VK +VH F A DR H ++I T LA+L E E GY P L+++ +
Sbjct: 548 KGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEE 607
Query: 498 EKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRD 557
EK + +HSEKLALAFGL+S P +RI KNLRIC DCH FK++S V+REI+VRD
Sbjct: 608 EKAAEVSHHSEKLALAFGLLS-LPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRD 666
Query: 558 VNRYHRFLNGSCTCGDLW 575
NR+HRF +G C+C D W
Sbjct: 667 NNRFHRFKDGICSCKDYW 684
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 114/423 (26%), Positives = 190/423 (44%), Gaps = 14/423 (3%)
Query: 19 RIVHARALKS--SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
R+VHAR +K+ S + N LI YSK + + + P+ N+VSWT+LIS +
Sbjct: 26 RVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQ 85
Query: 77 S---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
+ +L F M R +PN T FK ASL + G +H+L++K
Sbjct: 86 NGHFSTALVEFFEMRRE---GVVPNDFTFPCAFKAVASLRLP-VTGKQIHALAVKCGRIL 141
Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
F G + Y + R D+A+K+FDEI ER++ + A I + R +++ F + R
Sbjct: 142 DVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFR 201
Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
D L A ++ + +HG + SG D +V V GLID YGK +
Sbjct: 202 RIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIR 261
Query: 254 DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313
+ +F E + N+++W +++A Y Q + L+ ++ +VL+A
Sbjct: 262 SSEIIFTE-MGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSAC 320
Query: 314 CNAGLAG-ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
AG+AG E + I V+ +E + + L+ G+ G +ED+E+ MP E +
Sbjct: 321 --AGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLV 377
Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
+L+ A G+ DMA + + + Y+ ++LS R V K+
Sbjct: 378 TRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFD 437
Query: 433 DRR 435
R
Sbjct: 438 SMR 440
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 345 bits (886), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 199/544 (36%), Positives = 313/544 (57%), Gaps = 10/544 (1%)
Query: 35 IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHP 91
+ NNLI YSKS L S R F P + +W+++IS + + L SL M+
Sbjct: 52 VANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMM--- 108
Query: 92 TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
+ P+ L S K+CA LS + G S+H LS+K F GS+LV Y++
Sbjct: 109 AGNLRPDDHVLPSATKSCAILSRCDI-GRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEI 167
Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
A+K+FDE+ +R+VV + M+ G+AQ ++L +F + ++ Y S +
Sbjct: 168 VYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVC 227
Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW 271
A +E R IHG ++ S D + VG+ L+ Y K G+ A +VF+E + V N W
Sbjct: 228 ANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNE-VPVKNLGIW 286
Query: 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331
NAM+ YAQ V+ELF +++ G P+ +FL VL A +AGL E + ++MK
Sbjct: 287 NAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMK- 345
Query: 332 RYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMAS 391
++EP +HY L+ +GRAGRL++A + MP +P +VW ALL+ +H ++A+
Sbjct: 346 ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAA 405
Query: 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKV 451
++ ++ P ++ ++N + GR+++ A+ RK+++DR +KE G SW+E + KV
Sbjct: 406 FAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKV 465
Query: 452 HVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLA 511
H F AG+R HE++++IY KLAEL EE E+ GY+ +L V EK + + YHSE+LA
Sbjct: 466 HTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLA 525
Query: 512 LAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTC 571
+AFGL++ P + +R++KNLR+C DCH + K++S R I+VRD NR+HRF +G C+C
Sbjct: 526 IAFGLIT-FPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSC 584
Query: 572 GDLW 575
D W
Sbjct: 585 NDYW 588
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 155/320 (48%), Gaps = 6/320 (1%)
Query: 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178
GL LH +K L P + L++FYS+ + P ++++ F++ ++ + ++I FAQ
Sbjct: 34 GLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQ 93
Query: 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238
N SL M + ++ + + A ++ A L+ + R +H ++ +G D +V V
Sbjct: 94 NELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFV 153
Query: 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
G+ L+D Y K G + AR++FDE + N + W+ MM GYAQ G+ L LF
Sbjct: 154 GSSLVDMYAKCGEIVYARKMFDE-MPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFEN 212
Query: 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358
A ++YSF +V++ N+ L E + I + ++ + + L+S + G E A
Sbjct: 213 LAVNDYSFSSVISVCANSTLL-ELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGA 271
Query: 359 ERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR--LIDINPYDDSAYVIVANVLS 416
++ +P + + +W A+L A H ++ KR L + P + ++ V N S
Sbjct: 272 YQVFNEVPVK-NLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKP-NFITFLNVLNACS 329
Query: 417 GVGRWDEVAEVRKVMKDRRV 436
G DE MK+ R+
Sbjct: 330 HAGLVDEGRYYFDQMKESRI 349
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 122/262 (46%), Gaps = 8/262 (3%)
Query: 19 RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN- 76
R VH ++K+ AD + ++L+ Y+K + Y+ ++F+ +P N+V+W+ ++ ++
Sbjct: 136 RSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQM 195
Query: 77 --SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
+ +L +F L + N + +S+ CA+ S G +H LS+K S
Sbjct: 196 GENEEALWLFKEALFE---NLAVNDYSFSSVISVCAN-STLLELGRQIHGLSIKSSFDSS 251
Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
F GS+LV YS+ P+ A +VF+E+ +++ + AM+ +AQ+S + +F M+
Sbjct: 252 SFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKL 311
Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
S + L A + +++ R S ++ L+D G+AG + +
Sbjct: 312 SGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQE 371
Query: 255 ARRVFDENLSVLNSIAWNAMMA 276
A V W A++
Sbjct: 372 ALEVITNMPIDPTESVWGALLT 393
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 345 bits (885), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 198/559 (35%), Positives = 305/559 (54%), Gaps = 11/559 (1%)
Query: 21 VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SN 76
+H A++S + +I L+ Y+K L + +LF+ + N+VSW ++I A+ N
Sbjct: 258 IHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNEN 317
Query: 77 SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
++ IF ML P ++ CA L G +H LS++L L
Sbjct: 318 PKEAMLIFQKMLDE---GVKPTDVSVMGALHACADLGD-LERGRFIHKLSVELGLDRNVS 373
Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
++L+ Y + + D A +F +++ R +V + AMI+GFAQN R +D+L+ F+ MRS
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT 433
Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
V + + A AEL+ + IHG + S LD+NV V T L+D Y K G + AR
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493
Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
+FD +S + WNAM+ GY G LELF ++ P+ +FL+V++A ++
Sbjct: 494 LIFDM-MSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 552
Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
GL K MK Y +E ++HY ++ +GRAGRL +A M MP +P V+ A
Sbjct: 553 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612
Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
+L IH + A K +RL ++NP D +V++AN+ W++V +VR M + +
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672
Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
RK G S +E+K +VH F +G H ++ IY L +L+ + GYVP + +L V +
Sbjct: 673 RKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVEN 731
Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
K + L HSEKLA++FGL++ G T+ + KNLR+C DCH + KYIS V REIVVR
Sbjct: 732 DVKEQLLSTHSEKLAISFGLLNTTA-GTTIHVRKNLRVCADCHNATKYISLVTGREIVVR 790
Query: 557 DVNRYHRFLNGSCTCGDLW 575
D+ R+H F NG+C+CGD W
Sbjct: 791 DMQRFHHFKNGACSCGDYW 809
Score = 139 bits (350), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 170/346 (49%), Gaps = 10/346 (2%)
Query: 43 YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTLSFLPNQ 99
Y+K ++ + ++F+ +P ++VSW +++ +S + ++ L + SM + P+
Sbjct: 180 YAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEE---NLKPSF 236
Query: 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159
T+ S+ ++L G +H +++ +ALV Y++ S + A+++FD
Sbjct: 237 ITIVSVLPAVSAL-RLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFD 295
Query: 160 EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
+ ER+VV + +MI + QN +++ +F M V T V GAL A A+L +E+
Sbjct: 296 GMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLER 355
Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
R IH +V GLDRNV V LI Y K V A +F + L ++WNAM+ G+A
Sbjct: 356 GRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGK-LQSRTLVSWNAMILGFA 414
Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
Q G L F + R PD +++++V+TA+ + + KWI + +R L+ +
Sbjct: 415 QNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRSCLDKNV 473
Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
T L+ + G + A R+ M E W A++ HG
Sbjct: 474 FVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHG 518
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 148/323 (45%), Gaps = 9/323 (2%)
Query: 39 LITNYSKSNLLSYSLRLFNHIPSP-NIVSWTALISAHSNSPL--SLNIFLSMLRHPTLSF 95
L++ + + + + R+F I S N++ T L S L +L F+ M R+ +
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRM-RYDDVE- 132
Query: 96 LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
P L K C + G +H L +K F + L + Y++ R + A+
Sbjct: 133 -PVVYNFTYLLKVCGDEAE-LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEAR 190
Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
KVFD + ERD+V + ++ G++QN +L + M ++ + + L A + L
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250
Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
+ + IHG+A+ SG D V + T L+D Y K G + AR++FD L N ++WN+M+
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLE-RNVVSWNSMI 309
Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
Y Q + + +F + G P + S + L A + G E ++I ++ V L
Sbjct: 310 DAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDL-ERGRFIHKLSVELGL 368
Query: 336 EPGLEHYTCLISAMGRAGRLEDA 358
+ + LIS + ++ A
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTA 391
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 140/306 (45%), Gaps = 9/306 (2%)
Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
A L + C+SL + L K L+ + F + LV + R+ S D A +VF+ I
Sbjct: 41 ALLLERCSSLKEL----RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPID 96
Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
+ V Y M+ GFA+ S L +L F MR DV +Y + L+ + A + +
Sbjct: 97 SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156
Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG 282
IHG V SG ++ TGL + Y K V++AR+VFD + + ++WN ++AGY+Q G
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDR-MPERDLVSWNTIVAGYSQNG 215
Query: 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342
LE+ + P + ++VL A+ L K I +R + +
Sbjct: 216 MARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG-KEIHGYAMRSGFDSLVNIS 274
Query: 343 TCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--I 400
T L+ + G LE A ++ M E + W +++ + A + ++++D +
Sbjct: 275 TALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGV 333
Query: 401 NPYDDS 406
P D S
Sbjct: 334 KPTDVS 339
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 344 bits (883), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 196/566 (34%), Positives = 312/566 (55%), Gaps = 40/566 (7%)
Query: 43 YSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTL 102
Y+ + +SL LF+ P++ +TA I+ S + L FL ++ + PN+ T
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
+SL K+C++ S G +H+ LK L P+ + LV Y++ +A+KVFD +
Sbjct: 134 SSLLKSCSTKS-----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG---------------- 206
ER +V AMI +A+ + + ++F M D+ S + G
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 207 ----------------ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
AL A +++ A+E R IH S + NV V TGLID Y K G
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308
Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE-MRGFAPDEYSFLAV 309
+ +A VF++ + +AWNAM+AGYA G L LF+ ++ + G P + +F+
Sbjct: 309 SLEEAVLVFNDT-PRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGT 367
Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
L A +AGL E + E M Y ++P +EHY CL+S +GRAG+L+ A M +
Sbjct: 368 LQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDA 427
Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
D+ +W ++L +HG + ++ + LI +N + YV+++N+ + VG ++ VA+VR
Sbjct: 428 DSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRN 487
Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
+MK++ + KE G S IE++ KVH F AGDR H ++++IYT L ++ E + GYVP +
Sbjct: 488 LMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNT 547
Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
+L ++ + EK ++L HSE+LA+A+GL+S P G L+I KNLR+C DCH K IS++
Sbjct: 548 VLQDLEETEKEQSLQVHSERLAIAYGLISTKP-GSPLKIFKNLRVCSDCHTVTKLISKIT 606
Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
R+IV+RD NR+H F +GSC+CGD W
Sbjct: 607 GRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 123/273 (45%), Gaps = 14/273 (5%)
Query: 20 IVHARALKSSQADRSIYNN--LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
+V A+ + +RS+ ++ +IT Y+K + + LF+ + +IVSW +I ++
Sbjct: 177 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQH 236
Query: 78 PL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSL--SLKLSLH 132
+L +F +L P++ T+ + C+ + A G +H S ++ L+
Sbjct: 237 GFPNDALMLFQKLLAEGKPK--PDEITVVAALSACSQIG-ALETGRWIHVFVKSSRIRLN 293
Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
K G L+ YS+ S + A VF++ +D+V + AMI G+A + D+L +F +M
Sbjct: 294 VKVCTG--LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEM 351
Query: 193 RS-SDVGSTMYCVSGALRAAAELAAM-EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
+ + + T G L+A A + E R+ G+ + L+ G+AG
Sbjct: 352 QGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAG 411
Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283
+ A +S+ W++++ GD
Sbjct: 412 QLKRAYETIKNMNMDADSVLWSSVLGSCKLHGD 444
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 343 bits (879), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 193/572 (33%), Positives = 317/572 (55%), Gaps = 22/572 (3%)
Query: 21 VHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS- 77
+HA ALK+ D + + + L+ Y + R+F+ + I W A+I+ +S +
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 78 --PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
+L +F+ M + L N T+A + C S AF ++H +K L
Sbjct: 384 HDKEALLLFIGM--EESAGLLANSTTMAGVVPACVR-SGAFSRKEAIHGFVVKRGLDRDR 440
Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
F + L+ YSR D A ++F ++ +RD+V + MI G+ + D+L + M++
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 500
Query: 196 D-----------VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244
+ + + L + A L+A+ + + IH +A+ + L +V VG+ L+D
Sbjct: 501 ERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560
Query: 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304
Y K G + +R+VFD+ + N I WN ++ Y G+ ++L ++ ++G P+E
Sbjct: 561 MYAKCGCLQMSRKVFDQ-IPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 619
Query: 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364
+F++V A ++G+ E + MK Y +EP +HY C++ +GRAGR+++A ++
Sbjct: 620 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 679
Query: 365 MPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423
MP + + A W +LL S IH ++ + LI + P S YV++AN+ S G WD+
Sbjct: 680 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 739
Query: 424 VAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483
EVR+ MK++ VRKE G SWIE +VH F+AGD H ++E + L L E + GY
Sbjct: 740 ATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGY 799
Query: 484 VPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFK 543
VP +LHNV + EK L HSEKLA+AFG+++ +P G +R+ KNLR+C DCH + K
Sbjct: 800 VPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSP-GTIIRVAKNLRVCNDCHLATK 858
Query: 544 YISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
+IS++V+REI++RDV R+HRF NG+C+CGD W
Sbjct: 859 FISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 158/364 (43%), Gaps = 17/364 (4%)
Query: 34 SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSMLRH 90
++ N L+ Y K ++F+ I N VSW +LIS+ ++L F ML
Sbjct: 134 TVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDE 193
Query: 91 PTLSFLPNQRTLASLFKTCASLS--HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
+ P+ TL S+ C++L + G +H+ L+ F + LV Y +
Sbjct: 194 ---NVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKL 249
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
++K + RD+V + ++ QN +L+++L +M V + +S L
Sbjct: 250 GKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 309
Query: 209 RAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
A + L + + +H +A+ +G LD N VG+ L+D Y V RRVFD
Sbjct: 310 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369
Query: 268 SIAWNAMMAGYAQ-QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
+ WNAM+AGY+Q + D+ +L + E G + + V+ A +G E I
Sbjct: 370 GL-WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEA-I 427
Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS---FSAI 383
V+ L+ L+ R G+++ A RI M + D W +++ FS
Sbjct: 428 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEH 486
Query: 384 HGKA 387
H A
Sbjct: 487 HEDA 490
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN-VIVGT 240
L +++ + DM + Y L+A A+L ME + IH H G + V V
Sbjct: 78 LREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVAN 137
Query: 241 GLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
L++ Y K G +VFD +S N ++WN++++ LE F +
Sbjct: 138 TLVNLYRKCGDFGAVYKVFDR-ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 196
Query: 301 PDEYSFLAVLTALCN 315
P ++ ++V+TA N
Sbjct: 197 PSSFTLVSVVTACSN 211
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 343 bits (879), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 193/543 (35%), Positives = 300/543 (55%), Gaps = 10/543 (1%)
Query: 37 NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLS---LNIFLSMLRHPTL 93
N LI Y ++ L + ++F+ +P + +W A+I+ + L++F M L
Sbjct: 114 NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREM---HGL 170
Query: 94 SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
F P++ TL S+F A L + G +H ++K L S+L H Y R +
Sbjct: 171 GFSPDEYTLGSVFSGSAGL-RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 229
Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
+ V + R++V + +I+G AQN L ++ M+ S L + ++
Sbjct: 230 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 289
Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
LA Q + IH A+ G V V + LI Y K G + DA + F E + + W++
Sbjct: 290 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE-DEVMWSS 348
Query: 274 MMAGYAQQGDQSTVLELFHLL-EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332
M++ Y G +ELF+ + E +E +FL +L A ++GL + + + M +
Sbjct: 349 MISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEK 408
Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392
Y +PGL+HYTC++ +GRAG L+ AE I +MP + D +W+ LLS IH A+MA +
Sbjct: 409 YGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQR 468
Query: 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVH 452
+ K ++ I+P D + YV++ANV + RW +V+EVRK M+D+ V+KE G SW E KG+VH
Sbjct: 469 VFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVH 528
Query: 453 VFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLAL 512
F GDR ++++IY+ L EL E + GY P +LH++ + EK L HSEKLA+
Sbjct: 529 QFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAV 588
Query: 513 AFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCG 572
AF L+ P G +RI+KNLR+C DCH +FKYIS + REI +RD +R+H F+NG C+CG
Sbjct: 589 AFALMI-LPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCG 647
Query: 573 DLW 575
D W
Sbjct: 648 DYW 650
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 145/332 (43%), Gaps = 35/332 (10%)
Query: 93 LSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152
L+ N ++C + + G LH L + F + L+ YS+
Sbjct: 38 LNIFTNTSLFTPFIQSCTT-RQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFP 96
Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM--RSSDVGSTM--------- 201
+A V+ +R+++ + +I G+ + LV++ VF +M R + M
Sbjct: 97 SAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEF 156
Query: 202 --------------------YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
Y + +A L ++ + IHG+ + GL+ +++V +
Sbjct: 157 NEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSS 216
Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
L Y + G + D V ++ V N +AWN ++ G AQ G TVL L+ ++++ G P
Sbjct: 217 LAHMYMRNGKLQDGEIVI-RSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRP 275
Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
++ +F+ VL++ + + G+ ++ I ++ + + LIS + G L DA +
Sbjct: 276 NKITFVTVLSSCSDLAIRGQGQQ-IHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAK- 333
Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393
A + + D +W +++S HG+ D A ++
Sbjct: 334 AFSEREDEDEVMWSSMISAYGFHGQGDEAIEL 365
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/325 (18%), Positives = 131/325 (40%), Gaps = 31/325 (9%)
Query: 21 VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI--SAHSNS 77
+H +K + D + ++L Y ++ L + +P N+V+W LI +A +
Sbjct: 198 IHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGC 257
Query: 78 PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
P ++ M++ PN+ T ++ +C+ L+ G +H+ ++K+
Sbjct: 258 PETVLYLYKMMKISGCR--PNKITFVTVLSSCSDLAIRGQ-GQQIHAEAIKIGASSVVAV 314
Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGF---AQNSRLVDSLSVFADMRS 194
S+L+ YS+ +A K F E + D V + +MI + Q ++ + A+ +
Sbjct: 315 VSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTN 374
Query: 195 SDVGSTMY------CVSGALR-AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
++ + C L+ EL M ++ + GL T ++D G
Sbjct: 375 MEINEVAFLNLLYACSHSGLKDKGLELFDM----MVEKYGFKPGLKHY----TCVVDLLG 426
Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
+AG + A + + + W +++ + +F E+ P++ +
Sbjct: 427 RAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFK--EILQIDPNDSACY 484
Query: 308 AVLTALCNAGLAGESEKWIERMKVR 332
+L A + +++W + +VR
Sbjct: 485 VLL-----ANVHASAKRWRDVSEVR 504
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 342 bits (878), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 193/563 (34%), Positives = 313/563 (55%), Gaps = 13/563 (2%)
Query: 19 RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSP--NIVSWTALISAHS 75
R VHA+ + AD + N LI Y+K L + +F +P P IVSWTA++SA++
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198
Query: 76 NS--PL-SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
+ P+ +L IF M + + P+ L S+ L G S+H+ +K+ L
Sbjct: 199 QNGEPMEALEIFSQMRK---MDVKPDWVALVSVLNAFTCLQD-LKQGRSIHASVVKMGLE 254
Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
+P +L Y++ AK +FD+++ +++ + AMI G+A+N +++ +F +M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314
Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
+ DV ++ A+ A A++ ++EQ R ++ + S +V + + LID + K G V
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374
Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
AR VFD L + + W+AM+ GY G + L+ +E G P++ +FL +L A
Sbjct: 375 EGARLVFDRTLD-RDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMA 433
Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
++G+ E + RM +K+ P +HY C+I +GRAG L+ A + MP +P
Sbjct: 434 CNHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVT 492
Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
VW ALLS H ++ ++L I+P + YV ++N+ + WD VAEVR MK
Sbjct: 493 VWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMK 552
Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
++ + K+ G SW+EV+G++ F GD+ H R E+I ++ + + G+V D LH
Sbjct: 553 EKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLH 612
Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
++ D E E L HSE++A+A+GL+S P+G LRI KNLR C +CH + K IS++V+RE
Sbjct: 613 DLNDEEAEETLCSHSERIAIAYGLIS-TPQGTPLRITKNLRACVNCHAATKLISKLVDRE 671
Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
IVVRD NR+H F +G C+CGD W
Sbjct: 672 IVVRDTNRFHHFKDGVCSCGDYW 694
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 169/370 (45%), Gaps = 7/370 (1%)
Query: 21 VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
+HAR L Q + LI S ++++ ++F+ +P P I W A+I +S +
Sbjct: 40 IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99
Query: 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
+ L P+ T L K C+ LSH G +H+ +L F +
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSH-LQMGRFVHAQVFRLGFDADVFVQN 158
Query: 140 ALVHFYSRFRSPDNAKKVFD--EIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
L+ Y++ R +A+ VF+ + ER +V + A++ +AQN +++L +F+ MR DV
Sbjct: 159 GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV 218
Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
+ L A L ++Q R IH V GL+ + L Y K G V+ A+
Sbjct: 219 KPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKI 278
Query: 258 VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
+FD+ + N I WNAM++GYA+ G +++FH + + PD S + ++A G
Sbjct: 279 LFDK-MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337
Query: 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377
++ E + R + + LI + G +E A R+ + D VW A+
Sbjct: 338 SLEQARSMYEYVG-RSDYRDDVFISSALIDMFAKCGSVEGA-RLVFDRTLDRDVVVWSAM 395
Query: 378 LSFSAIHGKA 387
+ +HG+A
Sbjct: 396 IVGYGLHGRA 405
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 7/285 (2%)
Query: 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181
+H+ L L L F + L+H S F A++VFD++ + + A+I G+++N+
Sbjct: 40 IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99
Query: 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
D+L ++++M+ + V + L+A + L+ ++ R +H G D +V V G
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNG 159
Query: 242 LIDGYGKAGIVSDARRVFDE-NLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300
LI Y K + AR VF+ L ++W A+++ YAQ G+ LE+F +
Sbjct: 160 LIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVK 219
Query: 301 PDEYSFLAVLTAL-CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAE 359
PD + ++VL A C L +K+ ++EP L L + + G++ A+
Sbjct: 220 PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATAK 277
Query: 360 RIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI--DINP 402
+ M P+ +W A++S A +G A A M +I D+ P
Sbjct: 278 ILFDKMK-SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 219 QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGY 278
Q + IH +V GL + + T LI G ++ AR+VFD+ L WNA++ GY
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD-LPRPQIFPWNAIIRGY 94
Query: 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
++ L ++ +++ +PD ++F +L A C+ + +++ R +
Sbjct: 95 SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKA-CSGLSHLQMGRFVHAQVFRLGFDAD 153
Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAV-WRALLSFSAIHGKA----DMASKM 393
+ LI+ + RL A + +P V W A++S A +G+ ++ S+M
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213
Query: 394 GKRLIDINPYDDSAYVIVANVLS 416
R +D+ P D A V V N +
Sbjct: 214 --RKMDVKP-DWVALVSVLNAFT 233
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 341 bits (875), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 196/555 (35%), Positives = 308/555 (55%), Gaps = 12/555 (2%)
Query: 30 QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH---SNSPLSLNIFLS 86
Q+D + + LI YS L + ++F+ IP NIVSWT++I + N+ ++++F
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKD 167
Query: 87 ML---RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH 143
+L + + L S+ C+ + L S+HS +K G+ L+
Sbjct: 168 LLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE-SIHSFVIKRGFDRGVSVGNTLLD 226
Query: 144 FYSRFRSPDNA--KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGST 200
Y++ A +K+FD+I ++D V Y +++ +AQ+ ++ VF + ++ V
Sbjct: 227 AYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFN 286
Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260
+S L A + A+ + IH + GL+ +VIVGT +ID Y K G V AR+ FD
Sbjct: 287 AITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFD 346
Query: 261 ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320
+ N +W AM+AGY G + LELF + G P+ +F++VL A +AGL
Sbjct: 347 R-MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHV 405
Query: 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSF 380
E +W MK R+ +EPGLEHY C++ +GRAG L+ A + M +PD+ +W +LL+
Sbjct: 406 EGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAA 465
Query: 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440
IH ++A RL +++ + Y++++++ + GRW +V VR +MK+R + K
Sbjct: 466 CRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPP 525
Query: 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKR 500
G S +E+ G+VHVFL GD H + E IY LAEL + GYV + H+V + EK
Sbjct: 526 GFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKE 585
Query: 501 EALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNR 560
L HSEKLA+AFG+++ P G T+ +VKNLR+C DCH K IS++V+RE VVRD R
Sbjct: 586 MTLRVHSEKLAIAFGIMNTVP-GSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKR 644
Query: 561 YHRFLNGSCTCGDLW 575
+H F +G C+CGD W
Sbjct: 645 FHHFKDGGCSCGDYW 659
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 170/355 (47%), Gaps = 14/355 (3%)
Query: 55 LFN-HIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113
LFN ++ ++ SW ++I+ + S S L+ LS P + + K C+SL
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90
Query: 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI 173
F G H + F SAL+ YS ++A+KVFDEI +R++V + +MI
Sbjct: 91 DIFS-GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149
Query: 174 VGFAQNSRLVDSLSVFADM--RSSDVGSTMYCVSGAL----RAAAELAAMEQCRVIHGHA 227
G+ N +D++S+F D+ +D M+ S L A + + A IH
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209
Query: 228 VVSGLDRNVIVGTGLIDGYGKAGI--VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
+ G DR V VG L+D Y K G V+ AR++FD+ + + +++N++M+ YAQ G +
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD-KDRVSYNSIMSVYAQSGMSN 268
Query: 286 TVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC 344
E+F L++ + + + VL A+ ++G A K I +R LE + T
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG-ALRIGKCIHDQVIRMGLEDDVIVGTS 327
Query: 345 LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399
+I + GR+E A + M + W A+++ +HG A A ++ +ID
Sbjct: 328 IIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMID 381
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 341 bits (874), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 181/568 (31%), Positives = 306/568 (53%), Gaps = 31/568 (5%)
Query: 19 RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
+IV AR S R + +N +IT Y++S + + +LF+ P ++ +WTA++S +
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQ 293
Query: 77 SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG-LSLHSLSLKLSLH 132
+ + + +F M +S+ +A L G + + + L
Sbjct: 294 NRMVEEARELFDKMPERNEVSW------------------NAMLAGYVQGERMEMAKELF 335
Query: 133 DKPFC-----GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
D C + ++ Y++ AK +FD++ +RD V + AMI G++Q+ ++L
Sbjct: 336 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 395
Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
+F M S AL A++ A+E + +HG V G + VG L+ Y
Sbjct: 396 LFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 455
Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
K G + +A +F E ++ + ++WN M+AGY++ G L F ++ G PD+ + +
Sbjct: 456 KCGSIEEANDLFKE-MAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMV 514
Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
AVL+A + GL + ++ M Y + P +HY C++ +GRAG LEDA + MPF
Sbjct: 515 AVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPF 574
Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
EPDAA+W LL S +HG ++A ++ + P + YV+++N+ + GRW +V ++
Sbjct: 575 EPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKL 634
Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
R M+D+ V+K G SWIE++ K H F GD H ++I+ L EL ++ GYV
Sbjct: 635 RVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKT 694
Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
+LH+V + EK + YHSE+LA+A+G++ G+ +R++KNLR+C DCH + KY++R
Sbjct: 695 SVVLHDVEEEEKERMVRYHSERLAVAYGIMR-VSSGRPIRVIKNLRVCEDCHNAIKYMAR 753
Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
+ R I++RD NR+H F +GSC+CGD W
Sbjct: 754 ITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 148/327 (45%), Gaps = 42/327 (12%)
Query: 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
+ ++ Y R + A+K+FDE+ ERD+V + MI G+ +N L + +F M DV
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 199 STMYCVSGALR------AAAELAAMEQCRVIHGHAVVSGLDRN----------------- 235
S +SG + A + M + + +A++S +N
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218
Query: 236 VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
++ L+ G+ K + +AR+ FD +++V + ++WN ++ GYAQ G +LF
Sbjct: 219 LVSWNCLLGGFVKKKKIVEARQFFD-SMNVRDVVSWNTIITGYAQSGKIDEARQLFDESP 277
Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
++ D +++ A+++ + E+ + ++M R ++ + +++ + R+
Sbjct: 278 VQ----DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS-----WNAMLAGYVQGERM 328
Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415
E A+ + MP + + W +++ A GK A K L D P D V A ++
Sbjct: 329 EMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEA----KNLFDKMPKRDP--VSWAAMI 381
Query: 416 SGVGRWDEVAEVRKVMKDRRVRKEGGR 442
+G + E ++ ++ +EGGR
Sbjct: 382 AGYSQSGHSFEALRLFV--QMEREGGR 406
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 19/235 (8%)
Query: 145 YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204
Y R + A +VF + V Y MI G+ +N + +F +M D+ S +
Sbjct: 74 YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMI 133
Query: 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
G +R A E ++ +R+V ++ GY + G V DAR VFD +
Sbjct: 134 KGYVRNRNLGKARELFEIMP--------ERDVCSWNTMLSGYAQNGCVDDARSVFDR-MP 184
Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324
N ++WNA+++ Y Q LF E S+ +L E+ +
Sbjct: 185 EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV----SWNCLLGGFVKKKKIVEARQ 240
Query: 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
+ + M VR + + +I+ ++G++++A ++ P + D W A++S
Sbjct: 241 FFDSMNVR-----DVVSWNTIITGYAQSGKIDEARQLFDESPVQ-DVFTWTAMVS 289
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 200/569 (35%), Positives = 313/569 (55%), Gaps = 24/569 (4%)
Query: 21 VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
+H +LK + S+ N L+T Y+++ L+ ++F+ +P + VSW ++I A + S
Sbjct: 437 IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSER 496
Query: 80 SLNIFLSMLRHPTLSFLPNQRTLASL----FKTCASLSHAFLFG---LSLHSLSLKLSLH 132
SL + FL QR L F + S + FG +H L+LK ++
Sbjct: 497 SLP-------EAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIA 549
Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQNSRLVDSLSV--F 189
D+ +AL+ Y + D +K+F + ER D V + +MI G+ N L +L + F
Sbjct: 550 DEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWF 609
Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
+ S MY L A A +A +E+ +H +V + L+ +V+VG+ L+D Y K
Sbjct: 610 MLQTGQRLDSFMYAT--VLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKC 667
Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLA 308
G + A R F+ + V NS +WN+M++GYA+ G L+LF +++ G PD +F+
Sbjct: 668 GRLDYALRFFN-TMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVG 726
Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
VL+A +AGL E K E M Y L P +EH++C+ +GRAG L+ E MP +
Sbjct: 727 VLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMK 786
Query: 369 PDAAVWRALLSFS--AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
P+ +WR +L A KA++ K + L + P + YV++ N+ + GRW+++ +
Sbjct: 787 PNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVK 846
Query: 427 VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
RK MKD V+KE G SW+ +K VH+F+AGD+ H + IY KL EL + GYVP
Sbjct: 847 ARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQ 906
Query: 487 WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
L+++ K E L YHSEKLA+AF L + +RI+KNLR+C DCH +FKYIS
Sbjct: 907 TGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYIS 966
Query: 547 RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
++ R+I++RD NR+H F +G+C+C D W
Sbjct: 967 KIEGRQIILRDSNRFHHFQDGACSCSDFW 995
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 177/371 (47%), Gaps = 17/371 (4%)
Query: 19 RIVHARALKSSQA-DRSIYNNLITNYSKS-NLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
R +H K S A D + N LI+ Y K + Y+L F I N VSW ++IS +S
Sbjct: 124 RQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQ 183
Query: 77 SP---LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS-LH 132
+ + IF SM + P + T SL T SL+ + L +++ S L
Sbjct: 184 AGDQRSAFRIFSSMQYDGSR---PTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLL 240
Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
F GS LV +++ S A+KVF+++ R+ V ++VG + ++ +F DM
Sbjct: 241 TDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM 300
Query: 193 RSS-DVGSTMYCV---SGALRAAAELAAMEQCRVIHGHAVVSGL-DRNVIVGTGLIDGYG 247
S DV Y + S + AE +++ R +HGH + +GL D V +G GL++ Y
Sbjct: 301 NSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYA 360
Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
K G ++DARRVF ++ +S++WN+M+ G Q G +E + + P ++ +
Sbjct: 361 KCGSIADARRVF-YFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLI 419
Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
+ L++ + A ++ I ++ ++ + L++ G L + +I +MP
Sbjct: 420 SSLSSCASLKWAKLGQQ-IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP- 477
Query: 368 EPDAAVWRALL 378
E D W +++
Sbjct: 478 EHDQVSWNSII 488
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 184/413 (44%), Gaps = 14/413 (3%)
Query: 19 RIVHARALKSSQAD--RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
R VH + + D I N L+ Y+K ++ + R+F + + VSW ++I+
Sbjct: 333 REVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQ 392
Query: 77 SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
+ ++ + SM RH LP TL S +CASL A L G +H SLKL +
Sbjct: 393 NGCFIEAVERYKSMRRH---DILPGSFTLISSLSSCASLKWAKL-GQQIHGESLKLGIDL 448
Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR-LVDSLSVFADM 192
+AL+ Y+ + +K+F + E D V + ++I A++ R L +++ F +
Sbjct: 449 NVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNA 508
Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
+ + S L A + L+ E + IHG A+ + + LI YGK G +
Sbjct: 509 QRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEM 568
Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
++F +++ WN+M++GY + L+L + G D + + VL+A
Sbjct: 569 DGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSA 628
Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
+ E + VR LE + + L+ + GRL+ A R MP ++
Sbjct: 629 FASVATL-ERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVR-NSY 686
Query: 373 VWRALLSFSAIHGKADMASKMGK--RLIDINPYDDSAYVIVANVLSGVGRWDE 423
W +++S A HG+ + A K+ + +L P D +V V + S G +E
Sbjct: 687 SWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEE 739
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 167/377 (44%), Gaps = 25/377 (6%)
Query: 19 RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
R H+R K+ + D+ +Y NNLI Y ++ + ++F+ +P N VSW ++S +S
Sbjct: 21 RFFHSRLYKN-RLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79
Query: 77 SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL-SHAFLFGLSLHSLSLKLSLHDKP 135
+ + + NQ S+ + C + S LFG +H L KLS
Sbjct: 80 NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139
Query: 136 FCGSALVHFYSR-FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
+ L+ Y + S A F +I ++ V + ++I ++Q + +F+ M+
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQY 199
Query: 195 SDVGSTMYCVSGALRAAAELAA-----MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
T Y + A L +EQ I SGL ++ VG+GL+ + K+
Sbjct: 200 DGSRPTEYTFGSLVTTACSLTEPDVRLLEQ---IMCTIQKSGLLTDLFVGSGLVSAFAKS 256
Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ--GDQSTVLELFHLLEMRGFAPDEYSFL 307
G +S AR+VF++ + N++ N +M G +Q G+++T L + M +P+ Y L
Sbjct: 257 GSLSYARKVFNQ-METRNAVTLNGLMVGLVRQKWGEEATKL-FMDMNSMIDVSPESYVIL 314
Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC-----LISAMGRAGRLEDAERIA 362
L++ LA E R + + GL + L++ + G + DA R+
Sbjct: 315 --LSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVF 372
Query: 363 MAMPFEPDAAVWRALLS 379
M + D+ W ++++
Sbjct: 373 YFMT-DKDSVSWNSMIT 388
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 339 bits (870), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 186/569 (32%), Positives = 320/569 (56%), Gaps = 13/569 (2%)
Query: 16 TDPRIVHARALKS--SQADRSIYNNLI---TNYSKSNLLSYSLRLFNHIPSP-NIVSWTA 69
T R +HA +++ S +D + +LI + +SY+ ++F+ I P N+ W
Sbjct: 31 TKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNT 90
Query: 70 LISAHSNSPLSLNIFLSMLRHPTLSFL--PNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
LI ++ S++ F S+ R +S L P+ T L K +++ L G ++HS+ +
Sbjct: 91 LIRGYAEIGNSISAF-SLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRL-GETIHSVVI 148
Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
+ + ++L+H Y+ +A KVFD++ E+D+V + ++I GFA+N + ++L+
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208
Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
++ +M S + + + L A A++ A+ + +H + + GL RN+ L+D Y
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268
Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE-MRGFAPDEYSF 306
+ G V +A+ +FDE + NS++W +++ G A G +ELF +E G P E +F
Sbjct: 269 RCGRVEEAKTLFDEMVDK-NSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327
Query: 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366
+ +L A + G+ E ++ RM+ YK+EP +EH+ C++ + RAG+++ A +MP
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP 387
Query: 367 FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426
+P+ +WR LL +HG +D+A +++ + P YV+++N+ + RW +V +
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447
Query: 427 VRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPV 486
+RK M V+K G S +EV +VH FL GD+ H +++ IY KL E+ GYVP
Sbjct: 448 IRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQ 507
Query: 487 WDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYIS 546
+ +V + EK A+ YHSEK+A+AF L+S P + +VKNLR+C DCH + K +S
Sbjct: 508 ISNVYVDVEEEEKENAVVYHSEKIAIAFMLIS-TPERSPITVVKNLRVCADCHLAIKLVS 566
Query: 547 RVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
+V REIVVRD +R+H F NGSC+C D W
Sbjct: 567 KVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 338 bits (868), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 182/559 (32%), Positives = 304/559 (54%), Gaps = 13/559 (2%)
Query: 21 VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN--- 76
+H+ A K+ + + I+ YSK + LF P+IV++ A+I +++
Sbjct: 243 IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGE 302
Query: 77 SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
+ LSL++F ++ L R +S + +S + ++H LK +
Sbjct: 303 TELSLSLFKELM-------LSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHAS 355
Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
+AL YS+ ++A+K+FDE E+ + + AMI G+ QN D++S+F +M+ S+
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSE 415
Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
++ L A A+L A+ + +H + + ++ V T LI Y K G +++AR
Sbjct: 416 FSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEAR 475
Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
R+FD ++ N + WN M++GY G L +F+ + G P +FL VL A +A
Sbjct: 476 RLFDL-MTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHA 534
Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
GL E ++ M RY EP ++HY C++ +GRAG L+ A + AM EP ++VW
Sbjct: 535 GLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWET 594
Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
LL IH ++A + ++L +++P + +V+++N+ S + + A VR+ K R++
Sbjct: 595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKL 654
Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
K G + IE+ HVF +GD+ H + ++IY KL +L + GY P + LH+V +
Sbjct: 655 AKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEE 714
Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
E+ + HSE+LA+AFGL++ P G +RI+KNLR+C DCH K IS++ ER IVVR
Sbjct: 715 EERELMVKVHSERLAIAFGLIATEP-GTEIRIIKNLRVCLDCHTVTKLISKITERVIVVR 773
Query: 557 DVNRYHRFLNGSCTCGDLW 575
D NR+H F +G C+CGD W
Sbjct: 774 DANRFHHFKDGVCSCGDYW 792
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 8/271 (2%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS--NSP-LSLNIFLSML 88
D S+ L S + Y+ +F + P++ + L+ S SP SL++F +
Sbjct: 51 DISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLR 110
Query: 89 RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
+ L PN T A + AS G +H ++ + GS +V Y +F
Sbjct: 111 KSTDLK--PNSSTYAFAI-SAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKF 167
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTMYCVSGA 207
++A+KVFD + E+D + + MI G+ +N V+S+ VF D+ S +
Sbjct: 168 WRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDI 227
Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
L A AEL + IH A +G + V TG I Y K G + +F E +
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFRE-FRKPD 286
Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298
+A+NAM+ GY G+ L LF L + G
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSG 317
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 338 bits (867), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 191/552 (34%), Positives = 302/552 (54%), Gaps = 19/552 (3%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
D + +L++ YS S L+ + +LF+ IP ++V+WTAL S ++ S ++++F M+
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204
Query: 89 RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
+ P+ + + C + G + ++ + F + LV+ Y++
Sbjct: 205 E---MGVKPDSYFIVQVLSACVHVGD-LDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKC 260
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
+ A+ VFD + E+D+V + MI G+A NS + + +F M ++ + + G L
Sbjct: 261 GKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFL 320
Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDR-----NVIVGTGLIDGYGKAGIVSDARRVFDENL 263
+ A L A++ G +S +DR N+ + LID Y K G ++ VF E +
Sbjct: 321 SSCASLGALDL-----GEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKE-M 374
Query: 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
+ + NA ++G A+ G +F E G +PD +FL +L +AGL +
Sbjct: 375 KEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGL 434
Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
++ + Y L+ +EHY C++ GRAG L+DA R+ MP P+A VW ALLS +
Sbjct: 435 RFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRL 494
Query: 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRS 443
+A + K LI + P++ YV ++N+ S GRWDE AEVR +M + ++K G S
Sbjct: 495 VKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYS 554
Query: 444 WIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL 503
WIE++GKVH FLA D+ H ++ IY KL +L E +G+VP + + +V + EK L
Sbjct: 555 WIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVL 614
Query: 504 WYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHR 563
YHSEKLA+A GL+S G+ +R+VKNLR+C DCHE K IS++ REIVVRD NR+H
Sbjct: 615 GYHSEKLAVALGLIS-TDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHC 673
Query: 564 FLNGSCTCGDLW 575
F NGSC+C D W
Sbjct: 674 FTNGSCSCNDYW 685
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 10/343 (2%)
Query: 51 YSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFK 107
YS LF+H PNI + +LI+ N+ L +L++FLS+ +H + T + K
Sbjct: 63 YSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKH---GLYLHGFTFPLVLK 119
Query: 108 TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167
C S L G+ LHSL +K + ++L+ YS ++A K+FDEI +R VV
Sbjct: 120 ACTRASSRKL-GIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVV 178
Query: 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHA 227
+ A+ G+ + R +++ +F M V Y + L A + ++ I +
Sbjct: 179 TWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYM 238
Query: 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287
+ +N V T L++ Y K G + AR VFD + + + W+ M+ GYA
Sbjct: 239 EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEK-DIVTWSTMIQGYASNSFPKEG 297
Query: 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347
+ELF + PD++S + L++ + G A + +W + R++ L LI
Sbjct: 298 IELFLQMLQENLKPDQFSIVGFLSSCASLG-ALDLGEWGISLIDRHEFLTNLFMANALID 356
Query: 348 AMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
+ G + + M E D + A +S A +G ++
Sbjct: 357 MYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLS 398
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 123/283 (43%), Gaps = 3/283 (1%)
Query: 96 LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
+P+ + KT S++ +H + LH F + L+ FR +
Sbjct: 6 VPSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSY 65
Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
+F + ++ Y ++I GF N ++L +F +R + + L+A +
Sbjct: 66 LLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRAS 125
Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
+ + +H V G + +V T L+ Y +G ++DA ++FDE + + + W A+
Sbjct: 126 SRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDE-IPDRSVVTWTALF 184
Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
+GY G ++LF + G PD Y + VL+A + G +S +WI + ++
Sbjct: 185 SGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVG-DLDSGEWIVKYMEEMEM 243
Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
+ T L++ + G++E A + +M E D W ++
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMI 285
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 123/260 (47%), Gaps = 24/260 (9%)
Query: 30 QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
Q + + L+ Y+K + + +F+ + +IV+W+ +I ++++ + +FL
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQ 303
Query: 87 MLRHPTLSFLPNQRTLASLFKTCASLSHAFL--FGLSL---HSLSLKLSLHDKPFCGSAL 141
ML+ + P+Q ++ +CASL L +G+SL H L F +AL
Sbjct: 304 MLQE---NLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNL------FMANAL 354
Query: 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR----SSDV 197
+ Y++ + +VF E++E+D+V A I G A+N + S +VF S D
Sbjct: 355 IDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDG 414
Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARR 257
+ + + G + A + R + + V L R V ++D +G+AG++ DA R
Sbjct: 415 STFLGLLCGCVHAG---LIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYR 471
Query: 258 VFDENLSVLNSIAWNAMMAG 277
+ + N+I W A+++G
Sbjct: 472 LICDMPMRPNAIVWGALLSG 491
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 338 bits (867), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 187/548 (34%), Positives = 300/548 (54%), Gaps = 19/548 (3%)
Query: 36 YNNLITNYSKSNLLSYSLRLFNHIPSPNI----VSWTALISAHSNS---PLSLNIFLSML 88
YN +I+ Y +L + + S I ++ ++I A + + L + +L
Sbjct: 254 YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313
Query: 89 RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
R SF + +L SL+ C A ++ K+ D +AL+ Y
Sbjct: 314 RREDFSFHFDN-SLVSLYYKCGKFDEA-------RAIFEKMPAKDL-VSWNALLSGYVSS 364
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
AK +F E++E++++ + MI G A+N + L +F+ M+ Y SGA+
Sbjct: 365 GHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAI 424
Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
++ A L A + H + G D ++ G LI Y K G+V +AR+VF + L+S
Sbjct: 425 KSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVF-RTMPCLDS 483
Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
++WNA++A Q G + ++++ + +G PD + L VLTA +AGL + K+ +
Sbjct: 484 VSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDS 543
Query: 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388
M+ Y++ PG +HY LI + R+G+ DAE + ++PF+P A +W ALLS +HG +
Sbjct: 544 METVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNME 603
Query: 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448
+ +L + P D Y++++N+ + G+W+EVA VRK+M+DR V+KE SWIE++
Sbjct: 604 LGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEME 663
Query: 449 GKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNV-GDREKREALWYHS 507
+VH FL D H E +Y L +L +E RLGYVP +LH+V D K + L HS
Sbjct: 664 TQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHS 723
Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
EK+A+AFGL+ P G T+RI KNLR C DCH F+++S VV+R+I++RD R+H F NG
Sbjct: 724 EKIAVAFGLMK-LPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNG 782
Query: 568 SCTCGDLW 575
C+CG+ W
Sbjct: 783 ECSCGNFW 790
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 107/476 (22%), Positives = 186/476 (39%), Gaps = 121/476 (25%)
Query: 19 RIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS----- 72
R VH + R+ I N LI Y KS+ L+Y+ +LF+ I P+ ++ T ++S
Sbjct: 34 RAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCAS 93
Query: 73 ------------------------------AHSNSPLS-LNIFLSMLRHPTLSFLPNQRT 101
+H+N S +N+F M +H F P+ T
Sbjct: 94 GDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKM-KHE--GFKPDNFT 150
Query: 102 LASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN----AKKV 157
AS+ A ++ + H+ +LK +ALV YS+ S + A+KV
Sbjct: 151 FASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKV 210
Query: 158 FDEIRERD--------------------------------VVCYGAMIVGFAQNSRLVDS 185
FDEI E+D +V Y AMI G+ ++
Sbjct: 211 FDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEA 270
Query: 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV----------------- 228
L + M SS + + +RA A ++ + +H + +
Sbjct: 271 LEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLY 330
Query: 229 --VSGLD-----------RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
D ++++ L+ GY +G + +A+ +F E + N ++W M+
Sbjct: 331 YKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE-MKEKNILSWMIMI 389
Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSF------LAVLTALCNAGLAGESEKWIERM 329
+G A+ G L+LF ++ GF P +Y+F AVL A CN + + +
Sbjct: 390 SGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG-----QQYHAQLL 444
Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
K+ + + L LI+ + G +E+A ++ MP D+ W AL++ HG
Sbjct: 445 KIGF--DSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHG 497
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 117/286 (40%), Gaps = 41/286 (14%)
Query: 154 AKKVFDE--IRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
A+ VF++ + RD V Y AMI GF+ N+ ++++F M+ + + L
Sbjct: 99 ARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGL 158
Query: 212 AELAAME-QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG----IVSDARRVFDENLSV- 265
A +A E QC H A+ SG V L+ Y K ++ AR+VFDE L
Sbjct: 159 ALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKD 218
Query: 266 ------------------------------LNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
+ +A+NAM++GY +G LE+ +
Sbjct: 219 ERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMV 278
Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355
G DE+++ +V+ A AGL + K + +R + + L+S + G+
Sbjct: 279 SSGIELDEFTYPSVIRACATAGLL-QLGKQVHAYVLR-REDFSFHFDNSLVSLYYKCGKF 336
Query: 356 EDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401
++A I MP D W ALLS G A + K + + N
Sbjct: 337 DEARAIFEKMP-AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 25/320 (7%)
Query: 23 ARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
ARA+ K D +N L++ Y S + + +F + NI+SW +IS + +
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398
Query: 80 --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
L +F M R F P + K+CA L A+ G H+ LK+
Sbjct: 399 EEGLKLFSCMKRE---GFEPCDYAFSGAIKSCAVLG-AYCNGQQYHAQLLKIGFDSSLSA 454
Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
G+AL+ Y++ + A++VF + D V + A+I Q+ +++ V+ +M +
Sbjct: 455 GNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGI 514
Query: 198 GSTMYCVSGALRAAAELAAMEQCRVIHG-----HAVVSGLDRNVIVGTGLIDGYGKAGIV 252
+ L A + ++Q R + + G D LID ++G
Sbjct: 515 RPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHY----ARLIDLLCRSGKF 570
Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
SDA V + + W A+++G G+ L + ++ G P+ +L+
Sbjct: 571 SDAESVIESLPFKPTAEIWEALLSGCRVHGNME--LGIIAADKLFGLIPEHDGTYMLLSN 628
Query: 313 LCNAGLAGESEKWIERMKVR 332
+ A + +W E +VR
Sbjct: 629 MHAA-----TGQWEEVARVR 643
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 22/207 (10%)
Query: 237 IVGTGLIDGYGKAGIVSDARRVFDEN-LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295
I T ++ GY +G ++ AR VF++ + + +++ +NAM+ G++ D + + LF ++
Sbjct: 81 IARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMK 140
Query: 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM------ 349
GF PD ++F +VL L L + EK + L+ G + T + +A+
Sbjct: 141 HEGFKPDNFTFASVLAGL---ALVADDEKQCVQFHAA-ALKSGAGYITSVSNALVSVYSK 196
Query: 350 -GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
+ L + R E D W +++ +G D+ ++ + DD+
Sbjct: 197 CASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEEL------LEGMDDNMK 250
Query: 409 VIVAN-VLSGV---GRWDEVAEVRKVM 431
++ N ++SG G + E E+ + M
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRM 277
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 338 bits (866), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 207/559 (37%), Positives = 313/559 (55%), Gaps = 28/559 (5%)
Query: 34 SIYNNLITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISA---HSNSPLSLNIFLSMLR 89
S+ N +T YSK LL ++ +F + + VSW ++I A H +L ++ M+
Sbjct: 174 SVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIF 233
Query: 90 HPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149
F + TLAS+ SL H + G H +K H GS L+ FYS+
Sbjct: 234 K---GFKIDMFTLASVLNALTSLDH-LIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCG 289
Query: 150 SPD---NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD-SLSVFADM-----RSSDVGST 200
D +++KVF EI D+V + MI G++ N L + ++ F M R D +
Sbjct: 290 GCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDC--S 347
Query: 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI-VGTGLIDGYGKAGIVSDARRVF 259
CV+ A + L++ QC+ IHG A+ S + N I V LI Y K+G + DAR VF
Sbjct: 348 FVCVTSA---CSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVF 404
Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
D + LN++++N M+ GYAQ G + L L+ + G AP++ +F+AVL+A + G
Sbjct: 405 DR-MPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKV 463
Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
E +++ MK +K+EP EHY+C+I +GRAG+LE+AER AMP++P + W ALL
Sbjct: 464 DEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLG 523
Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439
H +A + L+ + P + YV++AN+ + +W+E+A VRK M+ +R+RK+
Sbjct: 524 ACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKK 583
Query: 440 GGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYV--PVWDEMLHNVGDR 497
G SWIEVK K HVF+A D H ++ L E+M++ +++GYV W + +
Sbjct: 584 PGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGE 643
Query: 498 EKREA-LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
E L +HSEKLA+AFGL+S G+ L +VKNLRIC DCH + K++S V REI+VR
Sbjct: 644 GDEEMRLGHHSEKLAVAFGLMS-TRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVR 702
Query: 557 DVNRYHRFLNGSCTCGDLW 575
D R+H F +G C+CGD W
Sbjct: 703 DNLRFHCFKDGKCSCGDYW 721
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 116/426 (27%), Positives = 201/426 (47%), Gaps = 19/426 (4%)
Query: 19 RIVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
R+ +ARA S + ++ YN ++ Y+K + + + +LF+ IP P+ VS+ LIS +++
Sbjct: 58 RLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYAD 117
Query: 77 SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
+ + + R L F + TL+ L C LH S+
Sbjct: 118 ARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLI---KQLHCFSVSGGFDSYSS 174
Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
+A V +YS+ A VF + E RD V + +MIV + Q+ +L+++ +M
Sbjct: 175 VNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFK 234
Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS-- 253
M+ ++ L A L + R HG + +G +N VG+GLID Y K G
Sbjct: 235 GFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGM 294
Query: 254 -DARRVFDENLSVLNSIAWNAMMAGYAQQGDQS-TVLELFHLLEMRGFAPDEYSFLAVLT 311
D+ +VF E LS + + WN M++GY+ + S ++ F ++ G PD+ SF+ V +
Sbjct: 295 YDSEKVFQEILSP-DLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS 353
Query: 312 ALCNAGLAGESE-KWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
A N L+ S+ K I + ++ + + LIS ++G L+DA + MP E
Sbjct: 354 ACSN--LSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP-EL 410
Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDEVAEV 427
+A + ++ A HG A + +R++D I P + +V V + + G+ DE E
Sbjct: 411 NAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAP-NKITFVAVLSACAHCGKVDEGQEY 469
Query: 428 RKVMKD 433
MK+
Sbjct: 470 FNTMKE 475
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 150/341 (43%), Gaps = 23/341 (6%)
Query: 94 SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN 153
++L N +L+ C LS+A S ++ F + +V Y++
Sbjct: 43 TYLSNH--FVNLYSKCGRLSYARAAFYSTEEPNV--------FSYNVIVKAYAKDSKIHI 92
Query: 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213
A+++FDEI + D V Y +I G+A ++ +F MR + +SG + A +
Sbjct: 93 ARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCD 152
Query: 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNA 273
++ + +H +V G D V + Y K G++ +A VF + + ++WN+
Sbjct: 153 --RVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNS 210
Query: 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG-LAGESEKWIERMKVR 332
M+ Y Q + + L L+ + +GF D ++ +VL AL + L G + + +K
Sbjct: 211 MIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAG 270
Query: 333 Y----KLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS-FSAIHGKA 387
+ + GL + S G + D+E++ + PD VW ++S +S +
Sbjct: 271 FHQNSHVGSGLIDF---YSKCGGCDGMYDSEKVFQEI-LSPDLVVWNTMISGYSMNEELS 326
Query: 388 DMASKMGKRLIDINPY-DDSAYVIVANVLSGVGRWDEVAEV 427
+ A K +++ I DD ++V V + S + + ++
Sbjct: 327 EEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQI 367
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 338 bits (866), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 204/585 (34%), Positives = 321/585 (54%), Gaps = 27/585 (4%)
Query: 5 LNQQPQPQNTSTDPRI--VHARALKSSQADRSIYNNLITN-----YSKSNLLSYSLRLFN 57
LN P + S P + +H +LK +YN L+ N Y+K LSY+ R+F+
Sbjct: 399 LNAVPVCFHESFLPSLKELHCYSLKQ----EFVYNELVANAFVASYAKCGSLSYAQRVFH 454
Query: 58 HIPSPNIVSWTALISAH--SNSP-LSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSH 114
I S + SW ALI H SN P LSL+ L M LP+ T+ SL C+ L
Sbjct: 455 GIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM---KISGLLPDSFTVCSLLSACSKLK- 510
Query: 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
+ G +H ++ L F +++ Y + +FD + ++ +V + +I
Sbjct: 511 SLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVIT 570
Query: 175 GFAQNSRLVDSLSVFADMRSSDV---GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
G+ QN +L VF M + G +M V GA + L ++ R H +A+
Sbjct: 571 GYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA---CSLLPSLRLGREAHAYALKHL 627
Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
L+ + + LID Y K G ++ + +VF+ L ++ +WNAM+ GY G ++LF
Sbjct: 628 LEDDAFIACSLIDMYAKNGSITQSSKVFN-GLKEKSTASWNAMIMGYGIHGLAKEAIKLF 686
Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
++ G PD+ +FL VLTA ++GL E +++++MK + L+P L+HY C+I +GR
Sbjct: 687 EEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGR 746
Query: 352 AGRLEDAERI-AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410
AG+L+ A R+ A M E D +W++LLS IH +M K+ +L ++ P YV+
Sbjct: 747 AGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVL 806
Query: 411 VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTK 470
++N+ +G+G+W++V +VR+ M + +RK+ G SWIE+ KV F+ G+R + E+I +
Sbjct: 807 LSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSL 866
Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
+ L + ++GY P + H++ + EK E L HSEKLAL +GL+ G T+R+ K
Sbjct: 867 WSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIK-TSEGTTIRVYK 925
Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
NLRIC DCH + K IS+V+EREIVVRD R+H F NG C+CGD W
Sbjct: 926 NLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 11/267 (4%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSML 88
D + +IT Y+ S +F+ + S N+ W A+IS++S + L L F+ M+
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 178
Query: 89 RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
T LP+ T + K CA +S + GL++H L +K L + F G+ALV FY
Sbjct: 179 --STTDLLPDHFTYPCVIKACAGMSDVGI-GLAVHGLVVKTGLVEDVFVGNALVSFYGTH 235
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
+A ++FD + ER++V + +MI F+ N +S + +M + L
Sbjct: 236 GFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATL 295
Query: 209 RAAAELAAMEQ----CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
+ A E+ + +HG AV LD+ +++ L+D Y K G +++A+ +F N +
Sbjct: 296 VTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMN-N 354
Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELF 291
N ++WN M+ G++ +GD ++
Sbjct: 355 NKNVVSWNTMVGGFSAEGDTHGTFDVL 381
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 176/386 (45%), Gaps = 13/386 (3%)
Query: 21 VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
VH +K+ D + N L++ Y ++ +L+LF+ +P N+VSW ++I S++
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268
Query: 80 SLNIFL----SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
S FL M + +F+P+ TL ++ CA L G +H ++KL L +
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL-GKGVHGWAVKLRLDKEL 327
Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
+AL+ YS+ NA+ +F ++VV + M+ GF+ + V M +
Sbjct: 328 VLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAG 387
Query: 196 --DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
DV + + A+ + + + +H +++ N +V + Y K G +S
Sbjct: 388 GEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLS 447
Query: 254 DARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
A+RVF S +NS WNA++ G+AQ D L+ +++ G PD ++ ++L+A
Sbjct: 448 YAQRVFHGIRSKTVNS--WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 505
Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
C+ + K + +R LE L Y ++S G L + + AM +
Sbjct: 506 -CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAME-DKSLV 563
Query: 373 VWRALLSFSAIHGKADMASKMGKRLI 398
W +++ +G D A + ++++
Sbjct: 564 SWNTVITGYLQNGFPDRALGVFRQMV 589
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 168/383 (43%), Gaps = 21/383 (5%)
Query: 21 VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSN 76
VH A+K + NN L+ YSK ++ + +F + N+VSW ++ SA +
Sbjct: 314 VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD 373
Query: 77 SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS-LHSLSLKLSLHDKP 135
+ + ++ ML ++ T+ + C +FL L LH SLK
Sbjct: 374 THGTFDVLRQMLAGGE-DVKADEVTILNAVPVC--FHESFLPSLKELHCYSLKQEFVYNE 430
Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
+A V Y++ S A++VF IR + V + A+I G AQ++ SL M+ S
Sbjct: 431 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 490
Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
+ + V L A ++L ++ + +HG + + L+R++ V ++ Y G +
Sbjct: 491 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 550
Query: 256 RRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA- 312
+ +FD E+ S+ ++WN ++ GY Q G L +F + + G S + V A
Sbjct: 551 QALFDAMEDKSL---VSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 607
Query: 313 --LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
L + L E+ + +++ LE LI + G + + ++ + E
Sbjct: 608 SLLPSLRLGREAHAY----ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKS 662
Query: 371 AAVWRALLSFSAIHGKADMASKM 393
A W A++ IHG A A K+
Sbjct: 663 TASWNAMIMGYGIHGLAKEAIKL 685
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 9/182 (4%)
Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDR---NVIVGTGLIDGYGKAGIVSDARRVFDENLS 264
L+A+ + +E R IH +VSG R + ++ T +I Y G D+R VFD L
Sbjct: 91 LQASGKRKDIEMGRKIH--QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA-LR 147
Query: 265 VLNSIAWNAMMAGYAQQGDQSTVLELF-HLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323
N WNA+++ Y++ VLE F ++ PD +++ V+ A G
Sbjct: 148 SKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL 207
Query: 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
+ + V+ L + L+S G G + DA ++ MP E + W +++ +
Sbjct: 208 A-VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMP-ERNLVSWNSMIRVFSD 265
Query: 384 HG 385
+G
Sbjct: 266 NG 267
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 337 bits (863), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 181/548 (33%), Positives = 303/548 (55%), Gaps = 12/548 (2%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISA---HSNSPLSLNIFLSML 88
D + +N+++ Y + + +L+LF +P N++SWT +I + S +L++F +ML
Sbjct: 158 DTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNML 217
Query: 89 RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
R S R + CA+ + AF G+ +H L +KL + + ++L+ FY+
Sbjct: 218 RCCIKS---TSRPFTCVITACAN-APAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANC 273
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
+ +++KVFDE V + A++ G++ N + D+LS+F+ M + + + L
Sbjct: 274 KRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGL 333
Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
+ + L ++ + +HG AV GL+ + VG L+ Y +G V+DA VF + +
Sbjct: 334 NSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKK-SI 392
Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328
++WN+++ G AQ G +F + PDE +F +L+A + G + K
Sbjct: 393 VSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYY 452
Query: 329 MKVRYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
M ++ ++HYTC++ +GR G+L++AE + M +P+ VW ALLS +H
Sbjct: 453 MSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDV 512
Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
D K + +++ +AYV+++N+ + GRW V+++R MK + K+ G SW+ +
Sbjct: 513 DRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVI 572
Query: 448 KGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHS 507
+GK H F +GD+ H IY KL L E+ + LGY P + LH+V D +K E LWYHS
Sbjct: 573 RGKKHEFFSGDQPH--CSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHS 630
Query: 508 EKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNG 567
E+LA+AFGL++ G + ++KNLR+C DCH K IS VV REIV+RD R+H F NG
Sbjct: 631 ERLAIAFGLINTV-EGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNG 689
Query: 568 SCTCGDLW 575
+C+CGD W
Sbjct: 690 TCSCGDYW 697
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/411 (22%), Positives = 176/411 (42%), Gaps = 29/411 (7%)
Query: 20 IVHARALKSSQADRSIYNN--LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
++H + +S N LI N+ S + + +FN +PSP++ +T +I+ ++ S
Sbjct: 20 VIHGKCYRSFSVTVEFQNREVLICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRS 79
Query: 78 PL---SLNIFLSMLRHPTLSF---------LPNQRTLASLFKT---------CASLSHAF 116
+LN+F M +S+ + T LF A ++ F
Sbjct: 80 NRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCF 139
Query: 117 LFGL--SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIV 174
G L ++ + D +++VH Y +F D+A K+F ++ ++V+ + MI
Sbjct: 140 RSGKVDQAERLFYQMPVKDTA-AWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMIC 198
Query: 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234
G QN R ++L +F +M + ST + + A A A +HG + G
Sbjct: 199 GLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLY 258
Query: 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294
V LI Y + D+R+VFDE + ++ W A+++GY+ L +F +
Sbjct: 259 EEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAV-WTALLSGYSLNKKHEDALSIFSGM 317
Query: 295 EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354
P++ +F + L + C+A + K + + V+ LE L+ +G
Sbjct: 318 LRNSILPNQSTFASGLNS-CSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGN 376
Query: 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
+ DA + + + F+ W +++ A HG+ A + ++I +N D
Sbjct: 377 VNDAVSVFIKI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPD 426
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 120/242 (49%), Gaps = 19/242 (7%)
Query: 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYG 170
S+SH + G S S+ + ++ L+ + R D A++VF+++ V Y
Sbjct: 16 SISHV-IHGKCYRSFSVTVEFQNR----EVLICNHLLSRRIDEAREVFNQVPSPHVSLYT 70
Query: 171 AMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230
MI G+ +++RLVD+L++F +M DV S +SG + A++ +
Sbjct: 71 KMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMP------ 124
Query: 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL 290
+R+V+ T +++G ++G V A R+F + + V ++ AWN+M+ GY Q G L+L
Sbjct: 125 --ERSVVSWTAMVNGCFRSGKVDQAERLFYQ-MPVKDTAAWNSMVHGYLQFGKVDDALKL 181
Query: 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350
F +M G + S+ ++ L +GE+ + M +R ++ +TC+I+A
Sbjct: 182 FK--QMPG--KNVISWTTMICGLDQNERSGEALDLFKNM-LRCCIKSTSRPFTCVITACA 236
Query: 351 RA 352
A
Sbjct: 237 NA 238
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 21 VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSN 76
+H A+K + D + N+L+ YS S ++ ++ +F I +IVSW ++I + H
Sbjct: 348 MHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGR 407
Query: 77 SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110
+ IF M+R L+ P++ T L C+
Sbjct: 408 GKWAFVIFGQMIR---LNKEPDEITFTGLLSACS 438
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 335 bits (858), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 191/598 (31%), Positives = 312/598 (52%), Gaps = 44/598 (7%)
Query: 19 RIVHARALKSSQADRSIY--NNLITNYSKSNLLSYSLRLFNHIPS----PNIVSWTALIS 72
R+ AR + +D+ + + L+ Y++ L +R+ + + S NIVSW ++S
Sbjct: 166 RMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILS 225
Query: 73 AHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
+ S + + L F P+Q T++S+ + S G +H +K L
Sbjct: 226 GFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGD-SEMLNMGRLIHGYVIKQGLL 284
Query: 133 DKPFCGSALVHFY-------------------------------SRFRSPDNAKKVFDEI 161
SA++ Y SR D A ++F+
Sbjct: 285 KDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELF 344
Query: 162 RER----DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
+E+ +VV + ++I G AQN + +++L +F +M+ + V + L A +AA+
Sbjct: 345 KEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAAL 404
Query: 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG 277
R HG AV L NV VG+ LID Y K G ++ ++ VF+ + N + WN++M G
Sbjct: 405 GHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNM-MPTKNLVCWNSLMNG 463
Query: 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337
++ G V+ +F L PD SF ++L+A GL E K+ + M Y ++P
Sbjct: 464 FSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKP 523
Query: 338 GLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397
LEHY+C+++ +GRAG+L++A + MPFEPD+ VW ALL+ + D+A ++L
Sbjct: 524 RLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKL 583
Query: 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAG 457
+ P + YV+++N+ + G W EV +R M+ ++K G SWI+VK +V+ LAG
Sbjct: 584 FHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAG 643
Query: 458 DRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
D+ H + + I K+ E+ +E + G+ P D LH+V ++E+ + LW HSEKLA+ FGL+
Sbjct: 644 DKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLL 703
Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
+ P G L+++KNLRIC DCH K+IS REI +RD NR+H F +G C+CGD W
Sbjct: 704 N-TPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 119/472 (25%), Positives = 205/472 (43%), Gaps = 81/472 (17%)
Query: 22 HARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL- 79
HAR LKS +Q D I LI +YS N + + + IP P I S+++LI A + + L
Sbjct: 38 HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97
Query: 80 --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137
S+ +F M H +P+ L +LFK CA LS AF G +H +S L F
Sbjct: 98 TQSIGVFSRMFSH---GLIPDSHVLPNLFKVCAELS-AFKVGKQIHCVSCVSGLDMDAFV 153
Query: 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197
++ H Y R +A+KVFD + ++DVV A++ +A+ L + + + ++M SS +
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI 213
Query: 198 GSTM------------------------------YC-----VSGALRAAAELAAMEQCRV 222
+ + +C VS L + + + R+
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273
Query: 223 IHGHAVVSGLDRNVIVGTGLIDGYGKA----GIVS------------------------- 253
IHG+ + GL ++ V + +ID YGK+ GI+S
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333
Query: 254 -----DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
+ +F E LN ++W +++AG AQ G LELF +++ G P+ + +
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393
Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
+L A N G + VR L + + LI + GR+ ++ + MP +
Sbjct: 394 MLPACGNIAALGHG-RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452
Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420
+ W +L++ ++HGKA + + L+ D ++ ++LS G+
Sbjct: 453 -NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD--FISFTSLLSACGQ 501
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 181/568 (31%), Positives = 312/568 (54%), Gaps = 21/568 (3%)
Query: 21 VHARALKSSQADRSIYNNLITNYSKSNL---LSYSLRLFNHIPSPNIVSWTALISAH-SN 76
+H+ A++S D + +L+ Y+K + + ++F+ + +++SWTALI+ + N
Sbjct: 291 LHSWAIRSGLVD-DVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN 349
Query: 77 SPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
L+ +N+F M+ + PN T +S FK C +LS + G + + K L
Sbjct: 350 CNLATEAINLFSEMITQGHVE--PNHFTFSSAFKACGNLSDPRV-GKQVLGQAFKRGLAS 406
Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
++++ + + ++A++ F+ + E+++V Y + G +N + + +++
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEIT 466
Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253
++G + + + L A + ++ + IH V GL N V LI Y K G +
Sbjct: 467 ERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSID 526
Query: 254 DARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
A RVF+ EN +V I+W +M+ G+A+ G VLE F+ + G P+E +++A+L+
Sbjct: 527 TASRVFNFMENRNV---ISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILS 583
Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
A + GL E + M +K++P +EHY C++ + RAG L DA MPF+ D
Sbjct: 584 ACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADV 643
Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
VWR L +H ++ +++++++P + +AY+ ++N+ + G+W+E E+R+ M
Sbjct: 644 LVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKM 703
Query: 432 KDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491
K+R + KEGG SWIEV K+H F GD H IY +L L+ E +R GYVP D +L
Sbjct: 704 KERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVL 763
Query: 492 HNVGDREKREA----LWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
H + + L+ HSEK+A+AFGL+S + + +R+ KNLR+C DCH + KYIS
Sbjct: 764 HKLEEENDEAEKERLLYQHSEKIAVAFGLIS-TSKSRPVRVFKNLRVCGDCHNAMKYIST 822
Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
V REIV+RD+NR+H F +G C+C D W
Sbjct: 823 VSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 175/359 (48%), Gaps = 28/359 (7%)
Query: 19 RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHI---PSPNIVSWTALISAH 74
++VHAR ++ + D +YN+LI+ YSKS + + +F + ++VSW+A+++ +
Sbjct: 82 KLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACY 141
Query: 75 SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
N+ L+ + L +PN ++ + C++ + ++L L +K +
Sbjct: 142 GNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFL-MKTGHFES 200
Query: 135 PFC-GSALVHFYSRFR-SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
C G +L+ + + S +NA KVFD++ E +VV + MI Q +++ F DM
Sbjct: 201 DVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDM 260
Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA--- 249
S S + +S A AEL + + +H A+ SGL + V L+D Y K
Sbjct: 261 VLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSAD 318
Query: 250 GIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQST-VLELFHLLEMRGFA-PDEYS 305
G V D R+VFD E+ SV+ +W A++ GY + + +T + LF + +G P+ ++
Sbjct: 319 GSVDDCRKVFDRMEDHSVM---SWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFT 375
Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT----CLISAMGRAGRLEDAER 360
F + A N S+ + + + + GL + +IS ++ R+EDA+R
Sbjct: 376 FSSAFKACGNL-----SDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQR 429
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 130/287 (45%), Gaps = 14/287 (4%)
Query: 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160
T +SL K+C + F G +H+ ++ + ++L+ YS+ A+ VF+
Sbjct: 64 TFSSLLKSCIR-ARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFET 122
Query: 161 IR---ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217
+R +RDVV + AM+ + N R +D++ VF + + YC + +RA + +
Sbjct: 123 MRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182
Query: 218 EQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKA-GIVSDARRVFDENLSVLNSIAWNAMM 275
RV G + +G + +V VG LID + K +A +VFD+ +S LN + W M+
Sbjct: 183 GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK-MSELNVVTWTLMI 241
Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA---LCNAGLAGESEKWIERMKVR 332
Q G + F + + GF D+++ +V +A L N L + W R +
Sbjct: 242 TRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLV 301
Query: 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
+E L SA G ++D ++ M + W AL++
Sbjct: 302 DDVECSLVDMYAKCSA---DGSVDDCRKVFDRME-DHSVMSWTALIT 344
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 332 bits (851), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 197/591 (33%), Positives = 314/591 (53%), Gaps = 39/591 (6%)
Query: 21 VHARALKSSQADRSI----YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
+HAR LK+ S + + + + S+ L Y+ +F+ P+ W +I S
Sbjct: 33 IHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSC 92
Query: 77 SPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
S L R S N T SL K C++LS AF +H+ KL + +
Sbjct: 93 SDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLS-AFEETTQIHAQITKLGYENDVY 151
Query: 137 CGSALVHFYS-------------RFRSPDN------------------AKKVFDEIRERD 165
++L++ Y+ R PD+ A +F ++ E++
Sbjct: 152 AVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKN 211
Query: 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHG 225
+ + MI G+ Q ++L +F +M++SDV ++ AL A A+L A+EQ + IH
Sbjct: 212 AISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHS 271
Query: 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
+ + + + ++G LID Y K G + +A VF +N+ + AW A+++GYA G
Sbjct: 272 YLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVF-KNIKKKSVQAWTALISGYAYHGHGR 330
Query: 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCL 345
+ F ++ G P+ +F AVLTA GL E + M+ Y L+P +EHY C+
Sbjct: 331 EAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCI 390
Query: 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405
+ +GRAG L++A+R MP +P+A +W ALL IH ++ ++G+ LI I+PY
Sbjct: 391 VDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHG 450
Query: 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTE 465
YV AN+ + +WD+ AE R++MK++ V K G S I ++G H FLAGDR H E
Sbjct: 451 GRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIE 510
Query: 466 DIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWY-HSEKLALAFGLVSGAPRGK 524
I +K + + E GYVP +EML ++ D ++REA+ + HSEKLA+ +GL+ P G
Sbjct: 511 KIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKP-GT 569
Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
+RI+KNLR+C+DCH+ K IS++ +R+IV+RD R+H F +G C+CGD W
Sbjct: 570 IIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 329 bits (844), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 173/549 (31%), Positives = 310/549 (56%), Gaps = 9/549 (1%)
Query: 30 QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLS 86
+ D ++ N LI YSK + + ++F+ + ++VSW +I ++ + + +L+IFL
Sbjct: 93 EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 152
Query: 87 MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYS 146
M R+ F ++ T++S+ C A L LH LS+K + + G+AL+ Y+
Sbjct: 153 M-RNEGFKF--SEFTISSVLSACGVNCDA-LECKKLHCLSVKTCIDLNLYVGTALLDLYA 208
Query: 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG 206
+ +A +VF+ ++++ V + +M+ G+ QN ++L ++ + + + +S
Sbjct: 209 KCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSS 268
Query: 207 ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266
+ A + LAA+ + + +H SG NV V + +D Y K G + ++ +F E +
Sbjct: 269 VICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSE-VQEK 327
Query: 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326
N WN +++G+A+ V+ LF ++ G P+E +F ++L+ + GL E ++
Sbjct: 328 NLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFF 387
Query: 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386
+ M+ Y L P + HY+C++ +GRAG L +A + ++PF+P A++W +LL+ ++
Sbjct: 388 KLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKN 447
Query: 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIE 446
++A ++L ++ P + +V+++N+ + +W+E+A+ RK+++D V+K G+SWI+
Sbjct: 448 LELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWID 507
Query: 447 VKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
+K KVH F G+ H R +I + L L+ + + GY P + LH+V +K E L H
Sbjct: 508 IKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQH 567
Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
SEKLAL FGL+ P +RI+KNLRIC DCHE K S R I+VRDVNR+H F +
Sbjct: 568 SEKLALVFGLMC-LPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSD 626
Query: 567 GSCTCGDLW 575
G C+CGD W
Sbjct: 627 GHCSCGDFW 635
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 157/341 (46%), Gaps = 6/341 (1%)
Query: 96 LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155
N+ + + + CA + A + + H +++ L + L++ YS+ + A+
Sbjct: 58 FSNRNLVHEILQLCAR-NGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELAR 116
Query: 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215
+VFD + ER +V + MI + +N ++L +F +MR+ + + +S L A
Sbjct: 117 QVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNC 176
Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
+C+ +H +V + +D N+ VGT L+D Y K G++ DA +VF E++ +S+ W++M+
Sbjct: 177 DALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVF-ESMQDKSSVTWSSMV 235
Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
AGY Q + L L+ + ++++ +V+ A N E K + + +
Sbjct: 236 AGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVICKSGF 294
Query: 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395
+ + + + G L ++ I + E + +W ++S A H + + +
Sbjct: 295 GSNVFVASSAVDMYAKCGSLRES-YIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFE 353
Query: 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
++ + + V +++LS G V E R+ K R
Sbjct: 354 KMQQDGMHPNE--VTFSSLLSVCGHTGLVEEGRRFFKLMRT 392
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 15/213 (7%)
Query: 177 AQNSRLVDSLSVFADMRSSDVGSTMYC--------VSGALRAAAELAAMEQCRVIHGHAV 228
+ S L ++SV A +V Y V L+ A A+ + + HG +
Sbjct: 29 SNTSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKII 88
Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
L+ +V + LI+ Y K G V AR+VFD L + ++WN M+ Y + +S L
Sbjct: 89 RIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLE-RSLVSWNTMIGLYTRNRMESEAL 147
Query: 289 ELFHLLEMR--GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346
++F LEMR GF E++ +VL+A C K + + V+ ++ L T L+
Sbjct: 148 DIF--LEMRNEGFKFSEFTISSVLSA-CGVNCDALECKKLHCLSVKTCIDLNLYVGTALL 204
Query: 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
+ G ++DA ++ +M + + W ++++
Sbjct: 205 DLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVA 236
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 328 bits (842), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 196/568 (34%), Positives = 315/568 (55%), Gaps = 21/568 (3%)
Query: 15 STDP-RIVHARAL--KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI 71
S DP R++ A L + + D YN +++ Y ++ + F+ +P + SW +I
Sbjct: 103 SKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMI 162
Query: 72 SAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK 128
+ ++ + +F SM+ +S+ + S + C L A F K
Sbjct: 163 TGYARRGEMEKARELFYSMMEKNEVSW----NAMISGYIECGDLEKASHF--------FK 210
Query: 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLS 187
++ +A++ Y + + + A+ +F ++ +++V + AMI G+ +NSR D L
Sbjct: 211 VAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLK 270
Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247
+F M + +S AL +EL+A++ R IH S L +V T LI Y
Sbjct: 271 LFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYC 330
Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307
K G + DA ++F E + + +AWNAM++GYAQ G+ L LF + PD +F+
Sbjct: 331 KCGELGDAWKLF-EVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFV 389
Query: 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
AVL A +AGL + E M YK+EP +HYTC++ +GRAG+LE+A ++ +MPF
Sbjct: 390 AVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPF 449
Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
P AAV+ LL +H ++A ++L+ +N + + YV +AN+ + RW++VA V
Sbjct: 450 RPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARV 509
Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
RK MK+ V K G SWIE++ KVH F + DR+H + I+ KL EL ++ + GY P
Sbjct: 510 RKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPEL 569
Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
+ LHNV + +K + L +HSEKLA+AFG + P+G +++ KNLRIC DCH++ K+IS
Sbjct: 570 EFALHNVEEEQKEKLLLWHSEKLAVAFGCIK-LPQGSQIQVFKNLRICGDCHKAIKFISE 628
Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
+ +REI+VRD R+H F +GSC+CGD W
Sbjct: 629 IEKREIIVRDTTRFHHFKDGSCSCGDYW 656
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 185/574 (32%), Positives = 315/574 (54%), Gaps = 16/574 (2%)
Query: 12 QNTSTDPRIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
+++ +D VH L + S D + LI YS + Y+ ++F+ I W AL
Sbjct: 90 RSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNAL 149
Query: 71 ISAHS---NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTC----ASLSHAFLFGLSLH 123
A + + L ++ M R + ++ T + K C +++H + G +H
Sbjct: 150 FRALTLAGHGEEVLGLYWKMNR---IGVESDRFTYTYVLKACVASECTVNH-LMKGKEIH 205
Query: 124 SLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLV 183
+ + + + LV Y+RF D A VF + R+VV + AMI +A+N +
Sbjct: 206 AHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAF 265
Query: 184 DSLSVFADM--RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241
++L F +M + D + L+A A LAA+EQ ++IHG+ + GLD + V +
Sbjct: 266 EALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISA 325
Query: 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301
L+ YG+ G + +RVFD + + ++WN++++ Y G +++F + G +P
Sbjct: 326 LVTMYGRCGKLEVGQRVFDR-MHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASP 384
Query: 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361
+F++VL A + GL E ++ E M + ++P +EHY C++ +GRA RL++A ++
Sbjct: 385 TPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKM 444
Query: 362 AMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421
M EP VW +LL IHG ++A + +RL + P + YV++A++ + W
Sbjct: 445 VQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMW 504
Query: 422 DEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481
DEV V+K+++ R ++K GR W+EV+ K++ F++ D + E I+ L +L E+ +
Sbjct: 505 DEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEK 564
Query: 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHES 541
GY+P +L+ + EK + HSEKLALAFGL++ + +G+ +RI KNLR+C DCH
Sbjct: 565 GYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTS-KGEPIRITKNLRLCEDCHLF 623
Query: 542 FKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
K+IS+ +E+EI+VRDVNR+HRF NG C+CGD W
Sbjct: 624 TKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 178/563 (31%), Positives = 297/563 (52%), Gaps = 14/563 (2%)
Query: 20 IVHARALKSSQADRSI--YNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--S 75
+V AR + +R + +N ++ Y++ LL + +LF+ + + SWTA+++ +
Sbjct: 136 LVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKK 195
Query: 76 NSPLSLNIFLSMLRHPTLSFLPNQRT---LASLFKTCASLSHAFLFGLSLHSLSLKLSLH 132
+ P + S+++ +PN R S+ A+ G +H ++ L
Sbjct: 196 DQPEEALVLYSLMQR-----VPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLD 250
Query: 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192
S+L+ Y + D A+ +FD+I E+DVV + +MI + ++SR + S+F+++
Sbjct: 251 SDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSEL 310
Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
S Y +G L A A+L E + +HG+ G D + L+D Y K G +
Sbjct: 311 VGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNI 370
Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
A+ V D + ++W +++ G AQ G L+ F LL G PD +F+ VL+A
Sbjct: 371 ESAKHVVD-GCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372
+AGL + ++ + +++L +HYTCL+ + R+GR E + + MP +P
Sbjct: 430 CTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKF 489
Query: 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432
+W ++L + +G D+A + + L I P + YV +AN+ + G+W+E ++RK M+
Sbjct: 490 LWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQ 549
Query: 433 DRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLH 492
+ V K G SW E+K K HVF+A D H I L EL ++ + GYVP +LH
Sbjct: 550 EIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLH 609
Query: 493 NVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVERE 552
+V D +K E L YHSEKLA+AF ++S G +++ KNLR C DCH + K+IS + +R+
Sbjct: 610 DVEDEQKEENLVYHSEKLAVAFAILS-TEEGTAIKVFKNLRSCVDCHGAIKFISNITKRK 668
Query: 553 IVVRDVNRYHRFLNGSCTCGDLW 575
I VRD R+H F NG C+CGD W
Sbjct: 669 ITVRDSTRFHCFENGQCSCGDYW 691
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 37/309 (11%)
Query: 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200
L+ Y++ S +A+KVFDE+ RD+ + M+ G+A+ L ++ +F +M D S
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSW 185
Query: 201 MYCVSGALRAAAELAAM----------------------------EQC----RVIHGHAV 228
V+G ++ A+ +C + IHGH V
Sbjct: 186 TAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIV 245
Query: 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288
+GLD + ++ + L+D YGK G + +AR +FD+ + + ++W +M+ Y +
Sbjct: 246 RAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDK-IVEKDVVSWTSMIDRYFKSSRWREGF 304
Query: 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
LF L P+EY+F VL A C E K + R +P + L+
Sbjct: 305 SLFSELVGSCERPNEYTFAGVLNA-CADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDM 363
Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408
+ G +E A+ + P +PD W +L+ A +G+ D A K L+ D +
Sbjct: 364 YTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD--H 420
Query: 409 VIVANVLSG 417
V NVLS
Sbjct: 421 VTFVNVLSA 429
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
R+ ++ YC ++ ++ A+E+ + +H H SG +++ L+ Y K G +
Sbjct: 79 RAKKPPASTYC--NLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSL 136
Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
DAR+VFDE + + +WN M+ GYA+ G +LF + + D YS+ A++T
Sbjct: 137 VDARKVFDE-MPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEK----DSYSWTAMVTG 191
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 179/568 (31%), Positives = 296/568 (52%), Gaps = 9/568 (1%)
Query: 14 TSTDPRI---VHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA 69
+S+ P+ +HA L++ +++ S+ L+ N + Y+ ++F+ + P I W
Sbjct: 20 SSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNT 79
Query: 70 LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL 129
L + + L L + L P++ T + K + L F G +LH+ +K
Sbjct: 80 LFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGD-FSCGFALHAHVVKY 138
Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
+ LV Y +F +A+ +F+ ++ +D+V + A + Q +L F
Sbjct: 139 GFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYF 198
Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
M + V + V L A +L ++E I+ A +D N+IV +D + K
Sbjct: 199 NKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKC 258
Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
G AR +F+E + N ++W+ M+ GYA GD L LF ++ G P+ +FL V
Sbjct: 259 GNTEAARVLFEE-MKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGV 317
Query: 310 LTALCNAGLAGESEKWIERM--KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367
L+A +AGL E +++ M LEP EHY C++ +GR+G LE+A MP
Sbjct: 318 LSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPV 377
Query: 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
EPD +W ALL A+H + K+ L++ P S +V+++N+ + G+WD V +V
Sbjct: 378 EPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKV 437
Query: 428 RKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVW 487
R M+ +K S +E +GK+H F GD+ H +++ IY KL E++++ ++GYVP
Sbjct: 438 RSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDT 497
Query: 488 DEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISR 547
+ H+V EK +L +HSEKLA+AFGL+ G P G +R++KNLR C DCH K++S
Sbjct: 498 CSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRP-GHPIRVMKNLRTCDDCHAFSKFVSS 556
Query: 548 VVEREIVVRDVNRYHRFLNGSCTCGDLW 575
+ EI++RD NR+H F NG C+C + W
Sbjct: 557 LTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 28/250 (11%)
Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
T +S LRA++ + +Q + IH + +G + T L++ G + AR+VF
Sbjct: 9 TKQMLSELLRASS--SKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVF 66
Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
DE + WN + GY + L L+ + G PDE+++ V+ A+ G
Sbjct: 67 DE-MHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLG-- 123
Query: 320 GESEKWIERMKVRYKLEPGLEHY---------TCLISAMGRAGRLEDAERIAMAMPFEPD 370
+ L + Y T L+ + G L AE + +M + D
Sbjct: 124 --------DFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVK-D 174
Query: 371 AAVWRALLSFSAIHGKADMASK-MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
W A L+ G + +A + K D +D V ++LS G+ + E+ +
Sbjct: 175 LVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDS---FTVVSMLSACGQLGSL-EIGE 230
Query: 430 VMKDRRVRKE 439
+ DR ++E
Sbjct: 231 EIYDRARKEE 240
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 180/561 (32%), Positives = 304/561 (54%), Gaps = 7/561 (1%)
Query: 19 RIVHARALKS-SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
R++H + +KS S I + L+ Y + + +LF+ +P ++VSW +LIS +S
Sbjct: 51 RLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGR 110
Query: 78 PLSLNIF--LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP 135
F LS + + F PN+ T S+ C + G +H L +K + ++
Sbjct: 111 GYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACV-YGGSKEEGRCIHGLVMKFGVLEEV 169
Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
+A +++Y + ++ K+F+++ +++V + MIV QN L+ F R
Sbjct: 170 KVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRV 229
Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
LR+ ++ + + IHG + G N + T L+D Y K G + D+
Sbjct: 230 GHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDS 289
Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
VF E ++ +S+AW AM+A YA G ++ F L+ G +PD +F +L A +
Sbjct: 290 STVFHE-ITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSH 348
Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
+GL E + + E M RY+++P L+HY+C++ +GR+G L+DA + MP EP + VW
Sbjct: 349 SGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWG 408
Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
ALL ++ + +K +RL ++ P D YV+++N+ S G W + + +R +MK +
Sbjct: 409 ALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKG 468
Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE-RLGYVPVWDEMLHNV 494
+ + G S+IE K+H F+ GD H +E I KL E+ ++ + +GY + +LH+V
Sbjct: 469 LVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDV 528
Query: 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIV 554
G+ K E + HSEK+A+AFGL+ +P + + I KNLRIC DCHE+ K IS + +R I+
Sbjct: 529 GEDVKEEMINQHSEKIAMAFGLLVVSPM-EPIIIRKNLRICGDCHETAKAISLIEKRRII 587
Query: 555 VRDVNRYHRFLNGSCTCGDLW 575
+RD R+H FL+GSC+C D W
Sbjct: 588 IRDSKRFHHFLDGSCSCSDYW 608
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 100/202 (49%), Gaps = 8/202 (3%)
Query: 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252
+SS V S VS + A ++E CR++H V S R+ +G L+ Y + G
Sbjct: 23 QSSFVHSLDANVSSLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHD 82
Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH--LLEMRGFAPDEYSFLAVL 310
A ++FDE + + ++WN++++GY+ +G E+ ++ GF P+E +FL+++
Sbjct: 83 VCAEKLFDE-MPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMI 141
Query: 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD 370
+A C G + E + I + +++ + ++ I+ G+ G L + ++ + + +
Sbjct: 142 SA-CVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIK-N 199
Query: 371 AAVWRALLSFSAIHGKADMASK 392
W ++ IH + +A K
Sbjct: 200 LVSWNTMI---VIHLQNGLAEK 218
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 181/567 (31%), Positives = 312/567 (55%), Gaps = 24/567 (4%)
Query: 21 VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--SNS 77
+H+ ++K +++ + N LI Y++ L ++F+ + +++SW ++I A+ +
Sbjct: 269 IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ 328
Query: 78 PL-SLNIF----LSMLRHPTLSFLPNQRTLASL--FKTCASLSHAFL-FGLSLHSLSLKL 129
PL ++++F LS ++ L+ + L+ L + C S+ L G L +++
Sbjct: 329 PLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITI-- 386
Query: 130 SLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189
G+A+V Y++ D+A+ VF+ + DV+ + +I G+AQN +++ ++
Sbjct: 387 --------GNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY 438
Query: 190 ADMRS-SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248
M ++ + L A ++ A+ Q +HG + +GL +V V T L D YGK
Sbjct: 439 NIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGK 498
Query: 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308
G + DA +F + + +NS+ WN ++A + G + LF + G PD +F+
Sbjct: 499 CGRLEDALSLFYQ-IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVT 557
Query: 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368
+L+A ++GL E + E M+ Y + P L+HY C++ GRAG+LE A + +M +
Sbjct: 558 LLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQ 617
Query: 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428
PDA++W ALLS +HG D+ + L ++ P +V+++N+ + G+W+ V E+R
Sbjct: 618 PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIR 677
Query: 429 KVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWD 488
+ + +RK G S +EV KV VF G++ H E++Y +L L + + +GYVP
Sbjct: 678 SIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHR 737
Query: 489 EMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRV 548
+L +V D EK L HSE+LA+AF L++ P T+RI KNLR+C DCH K+IS++
Sbjct: 738 FVLQDVEDDEKEHILMSHSERLAIAFALIA-TPAKTTIRIFKNLRVCGDCHSVTKFISKI 796
Query: 549 VEREIVVRDVNRYHRFLNGSCTCGDLW 575
EREI+VRD NR+H F NG C+CGD W
Sbjct: 797 TEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 111/420 (26%), Positives = 203/420 (48%), Gaps = 24/420 (5%)
Query: 14 TSTDPRIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
T D +H ALK D + +LI YS+ + + LF+ +P ++ SW A+IS
Sbjct: 165 TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMIS 224
Query: 73 AHSNS-----PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSL 127
+ S L+L+ L + + T+ SL C + F G+++HS S+
Sbjct: 225 GYCQSGNAKEALTLSNGLRAM---------DSVTVVSLLSACTE-AGDFNRGVTIHSYSI 274
Query: 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS 187
K L + F + L+ Y+ F + +KVFD + RD++ + ++I + N + + ++S
Sbjct: 275 KHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 334
Query: 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGY 246
+F +MR S + + ++L + CR + G + G ++ +G ++ Y
Sbjct: 335 LFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 394
Query: 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYS 305
K G+V AR VF+ L + I+WN +++GYAQ G S +E+++++E G A ++ +
Sbjct: 395 AKLGLVDSARAVFNW-LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGT 453
Query: 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365
+++VL A AG + K R+ ++ L + T L G+ GRLEDA + +
Sbjct: 454 WVSVLPACSQAGALRQGMKLHGRL-LKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512
Query: 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLID--INPYDDSAYVIVANVLSGVGRWDE 423
P ++ W L++ HG + A + K ++D + P D +V + + S G DE
Sbjct: 513 P-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKP-DHITFVTLLSACSHSGLVDE 570
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 177/384 (46%), Gaps = 26/384 (6%)
Query: 19 RIVHARALKSSQADR-SIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAH--- 74
+ +HAR + S Q I L+ Y ++ + F+HI + ++ +W +IS +
Sbjct: 71 KCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRA 130
Query: 75 SNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK 134
NS + F + L+ P+ RT S+ K C ++ + G +H L+LK
Sbjct: 131 GNSSEVIRCFSLFMLSSGLT--PDYRTFPSVLKACRTV----IDGNKIHCLALKFGFMWD 184
Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
+ ++L+H YSR+++ NA+ +FDE+ RD+ + AMI G+ Q+ ++L++ +R+
Sbjct: 185 VYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA 244
Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
D + V L A E + IH +++ GL+ + V LID Y + G + D
Sbjct: 245 MDSVT----VVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRD 300
Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
++VFD + V + I+WN+++ Y + LF + + PD + +++ + L
Sbjct: 301 CQKVFDR-MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359
Query: 315 NAGLAGESEKWIERMKVRYKLEPG--LEHYT---CLISAMGRAGRLEDAERIAMAMPFEP 369
G + R + L G LE T ++ + G ++ A + +P
Sbjct: 360 QLG-----DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NT 413
Query: 370 DAAVWRALLSFSAIHGKADMASKM 393
D W ++S A +G A A +M
Sbjct: 414 DVISWNTIISGYAQNGFASEAIEM 437
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 147/322 (45%), Gaps = 24/322 (7%)
Query: 104 SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA-LVHFYSRFRSPDNAKKVFDEIR 162
+LF+ C +L A LH+ L +S + C SA LV+ Y + A+ FD I+
Sbjct: 59 TLFRYCTNLQSA----KCLHA-RLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQ 113
Query: 163 ERDVVCYGAMIVGFAQ---NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219
RDV + MI G+ + +S ++ S+F M SS + L+A + +
Sbjct: 114 NRDVYAWNLMISGYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACRTVIDGNK 171
Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
IH A+ G +V V LI Y + V +AR +FDE + V + +WNAM++GY
Sbjct: 172 ---IHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDE-MPVRDMGSWNAMISGYC 227
Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
Q G+ L L + L A D + +++L+A AG I +++ LE L
Sbjct: 228 QSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESEL 282
Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK--RL 397
LI GRL D +++ M + D W +++ ++ + A + + RL
Sbjct: 283 FVSNKLIDLYAEFGRLRDCQKVFDRM-YVRDLISWNSIIKAYELNEQPLRAISLFQEMRL 341
Query: 398 IDINPYDDSAYVIVANVLSGVG 419
I P D + +A++LS +G
Sbjct: 342 SRIQP-DCLTLISLASILSQLG 362
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 316 bits (809), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 186/559 (33%), Positives = 299/559 (53%), Gaps = 21/559 (3%)
Query: 27 KSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS---NSPLSLNI 83
KS D Y LI Y+ + + +LF+ IP ++VSW A+IS ++ N +L +
Sbjct: 194 KSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 253
Query: 84 FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS---- 139
F M++ + P++ T+ ++ CA S + G +H L + D F +
Sbjct: 254 FKDMMK---TNVRPDESTMVTVVSACAQ-SGSIELGRQVH-----LWIDDHGFGSNLKIV 304
Query: 140 -ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG 198
AL+ YS+ + A +F+ + +DV+ + +I G+ + ++L +F +M S
Sbjct: 305 NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 364
Query: 199 STMYCVSGALRAAAELAAMEQCRVIHGH--AVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
+ L A A L A++ R IH + + G+ + T LID Y K G + A
Sbjct: 365 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAH 424
Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
+VF+ L S +WNAM+ G+A G +LF + G PD+ +F+ +L+A ++
Sbjct: 425 QVFNSILHKSLS-SWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376
G+ M YK+ P LEHY C+I +G +G ++AE + M EPD +W +
Sbjct: 484 GMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCS 543
Query: 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436
LL +HG ++ + LI I P + +YV+++N+ + GRW+EVA+ R ++ D+ +
Sbjct: 544 LLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 603
Query: 437 RKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGD 496
+K G S IE+ VH F+ GD+ H R +IY L E+ E+ G+VP E+L + +
Sbjct: 604 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEE 663
Query: 497 REKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVR 556
K AL +HSEKLA+AFGL+S P G L IVKNLR+CR+CHE+ K IS++ +REI+ R
Sbjct: 664 EWKEGALRHHSEKLAIAFGLISTKP-GTKLTIVKNLRVCRNCHEATKLISKIYKREIIAR 722
Query: 557 DVNRYHRFLNGSCTCGDLW 575
D R+H F +G C+C D W
Sbjct: 723 DRTRFHHFRDGVCSCNDYW 741
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 124/463 (26%), Positives = 208/463 (44%), Gaps = 66/463 (14%)
Query: 19 RIVHARALKSSQADRSIYNNLITNYSKSNL------------LSYSLRLFNHIPSPNIVS 66
RI+HA+ +K ++N TNY+ S L L Y++ +F I PN++
Sbjct: 50 RIIHAQMIKIG-----LHN---TNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLI 101
Query: 67 WTALISAH--SNSPLS-LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLH 123
W + H S+ P+S L +++ M+ +L LPN T + K+CA S AF G +H
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMI---SLGLLPNSYTFPFVLKSCAK-SKAFKEGQQIH 157
Query: 124 SLSLKLSLHDKPFCGSALVHFYSRF-----------RSP--------------------D 152
LKL + ++L+ Y + +SP +
Sbjct: 158 GHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIE 217
Query: 153 NAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212
NA+K+FDEI +DVV + AMI G+A+ ++L +F DM ++V + + A A
Sbjct: 218 NAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 277
Query: 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWN 272
+ ++E R +H G N+ + LID Y K G + A +F E L + I+WN
Sbjct: 278 QSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF-ERLPYKDVISWN 336
Query: 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE-RMKV 331
++ GY L LF + G P++ + L++L A + G A + +WI +
Sbjct: 337 TLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG-AIDIGRWIHVYIDK 395
Query: 332 RYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMA 390
R K + T LI + G +E A ++ ++ + W A++ A+HG+AD +
Sbjct: 396 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADAS 454
Query: 391 SKMGKRL--IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
+ R+ I I P DD +V + + S G D + + M
Sbjct: 455 FDLFSRMRKIGIQP-DDITFVGLLSACSHSGMLDLGRHIFRTM 496
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 145/330 (43%), Gaps = 57/330 (17%)
Query: 86 SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF- 144
S+ HP+LS L N +TL SL +H+ +K+ LH+ + S L+ F
Sbjct: 30 SIRNHPSLSLLHNCKTLQSL--------------RIIHAQMIKIGLHNTNYALSKLIEFC 75
Query: 145 --YSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY 202
F A VF I+E +++ + M G A +S V +L ++ M S + Y
Sbjct: 76 ILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSY 135
Query: 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLD----------------------------- 233
L++ A+ A ++ + IHGH + G D
Sbjct: 136 TFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS 195
Query: 234 --RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
R+V+ T LI GY G + +A+++FDE + V + ++WNAM++GYA+ G+ LELF
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDE-IPVKDVVSWNAMISGYAETGNYKEALELF 254
Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAG---LAGESEKWIERMKVRYKLEPGLEHYTCLISA 348
+ PDE + + V++A +G L + WI+ + L+ LI
Sbjct: 255 KDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWID----DHGFGSNLKIVNALIDL 310
Query: 349 MGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
+ G LE A + +P++ D W L+
Sbjct: 311 YSKCGELETACGLFERLPYK-DVISWNTLI 339
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 316 bits (809), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 187/566 (33%), Positives = 311/566 (54%), Gaps = 19/566 (3%)
Query: 19 RIVHARALKS--SQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSN 76
R VH+ +K+ S+ DR N L+ YSK L + +F + ++VS+T++I+ ++
Sbjct: 316 RAVHSIGVKACFSREDR-FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 374
Query: 77 SPLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD 133
L+ + +F M P+ T+ ++ CA G +H + L
Sbjct: 375 EGLAGEAVKLFEEMEEE---GISPDVYTVTAVLNCCARY-RLLDEGKRVHEWIKENDLGF 430
Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF---- 189
F +AL+ Y++ S A+ VF E+R +D++ + +I G+++N ++LS+F
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490
Query: 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249
+ R S T+ CV L A A L+A ++ R IHG+ + +G + V L+D Y K
Sbjct: 491 EEKRFSPDERTVACV---LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKC 547
Query: 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309
G + A +FD+ ++ + ++W M+AGY G + LF+ + G DE SF+++
Sbjct: 548 GALLLAHMLFDD-IASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSL 606
Query: 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEP 369
L A ++GL E ++ M+ K+EP +EHY C++ + R G L A R MP P
Sbjct: 607 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPP 666
Query: 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429
DA +W ALL IH +A K+ +++ ++ P + YV++AN+ + +W++V +RK
Sbjct: 667 DATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRK 726
Query: 430 VMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDE 489
+ R +RK G SWIE+KG+V++F+AGD + TE+I L ++ GY P+
Sbjct: 727 RIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKY 786
Query: 490 MLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVV 549
L + + EK EAL HSEKLA+A G++S + GK +R+ KNLR+C DCHE K++S++
Sbjct: 787 ALIDAEEMEKEEALCGHSEKLAMALGIIS-SGHGKIIRVTKNLRVCGDCHEMAKFMSKLT 845
Query: 550 EREIVVRDVNRYHRFLNGSCTCGDLW 575
REIV+RD NR+H+F +G C+C W
Sbjct: 846 RREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 163/353 (46%), Gaps = 16/353 (4%)
Query: 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSML 88
D ++ + L Y+ L + R+F+ + + W L++ + S S+ +F M+
Sbjct: 128 DSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMM 187
Query: 89 RHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148
+ + T + + K+ +SL + G LH LK ++ G++LV FY +
Sbjct: 188 ---SSGVEMDSYTFSCVSKSFSSL-RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKN 243
Query: 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208
+ D+A+KVFDE+ ERDV+ + ++I G+ N LSVF M S + + +
Sbjct: 244 QRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVF 303
Query: 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268
A+ + R +H V + R L+D Y K G + A+ VF E +S +
Sbjct: 304 AGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFRE-MSDRSV 362
Query: 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK---W 325
+++ +M+AGYA++G ++LF +E G +PD Y+ AVL L E ++ W
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW 422
Query: 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
I+ + + + L+ + G +++AE + M + D W ++
Sbjct: 423 IKENDLGFDIFVS----NALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 470
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 315 bits (808), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 169/549 (30%), Positives = 305/549 (55%), Gaps = 15/549 (2%)
Query: 37 NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93
N+L+ YSK ++ + ++F I +++SW A+I+ ++ +L+ F M++ +
Sbjct: 146 NSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTF-GMMQEANI 204
Query: 94 SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH--DKPFCGSALVHFYSRFRSP 151
P++ TL SL K C+S + G +H ++ H +LV Y +
Sbjct: 205 KERPDEFTLTSLLKACSSTGMIYA-GKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYL 263
Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
+A+K FD+I+E+ ++ + ++I+G+AQ V+++ +F ++ + + +S +
Sbjct: 264 FSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVF 323
Query: 212 AELAAMEQCRVIHGHAVV--SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
A+ A + Q + + AV SGL+ +V+ ++D Y K G+V +A + F E + + + I
Sbjct: 324 ADFALLRQGKQMQALAVKLPSGLETSVL--NSVVDMYLKCGLVDEAEKCFAE-MQLKDVI 380
Query: 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329
+W ++ GY + G + +F+ + PDE +LAVL+A ++G+ E E+ ++
Sbjct: 381 SWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKL 440
Query: 330 KVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADM 389
+ ++P +EHY C++ +GRAGRL++A+ + MP +P+ +W+ LLS +HG ++
Sbjct: 441 LETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIEL 500
Query: 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKG 449
++GK L+ I+ + + YV+++N+ G W+E R++ + ++KE G SW+E++
Sbjct: 501 GKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIER 560
Query: 450 KVHVFLAGDRMHERTEDIYTKLAELMEEC-ERLGYVPVWDEMLHNVGDREKREALWYHSE 508
+VH F +G+ H T I L E E LGYV LH++ D K E L HSE
Sbjct: 561 EVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSE 620
Query: 509 KLALAFGLVSGA--PRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
KLA+ L +G +GKT+R+ KNLR+C DCHE K +S++ + VVRD R+H F +
Sbjct: 621 KLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFED 680
Query: 567 GSCTCGDLW 575
G C+CGD W
Sbjct: 681 GCCSCGDYW 689
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/419 (26%), Positives = 197/419 (47%), Gaps = 22/419 (5%)
Query: 21 VHARALKSSQADRSIYNN-LITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHS-NSP 78
VH LKS I +N LI Y K + ++F+ +P N+VSW+AL+S H N
Sbjct: 28 VHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGD 87
Query: 79 L--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
L SL++F M R PN+ T ++ K C L +A GL +H LK+
Sbjct: 88 LKGSLSLFSEMGRQ---GIYPNEFTFSTNLKACG-LLNALEKGLQIHGFCLKIGFEMMVE 143
Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
G++LV YS+ + A+KVF I +R ++ + AMI GF +L F M+ ++
Sbjct: 144 VGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEAN 203
Query: 197 VGS--TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD--RNVIVGTGLIDGYGKAGIV 252
+ + ++ L+A + + + IHG V SG + + L+D Y K G +
Sbjct: 204 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYL 263
Query: 253 SDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312
AR+ FD+ + I+W++++ GYAQ+G+ + LF L+ D ++ +++
Sbjct: 264 FSARKAFDQ-IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGV 322
Query: 313 LCNAGLAGESEKWIERMKVRYKLEPGLEH--YTCLISAMGRAGRLEDAERIAMAMPFEPD 370
+ L + K ++ + V KL GLE ++ + G +++AE+ M + D
Sbjct: 323 FADFALLRQG-KQMQALAV--KLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLK-D 378
Query: 371 AAVWRALLSFSAIHGKADMASKMGKRLI--DINPYDDSAYVIVANVLSGVGRWDEVAEV 427
W +++ HG + ++ ++ +I P D+ Y+ V + S G E E+
Sbjct: 379 VISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEP-DEVCYLAVLSACSHSGMIKEGEEL 436
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 149/323 (46%), Gaps = 21/323 (6%)
Query: 95 FLPNQR-TLASLFKTCA--SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151
+PNQR L S+ + C LS G +H LK + L+ Y + R P
Sbjct: 1 MIPNQRQNLVSILRVCTRKGLSDQ---GGQVHCYLLKSGSGLNLITSNYLIDMYCKCREP 57
Query: 152 DNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211
A KVFD + ER+VV + A++ G N L SLS+F++M + + S L+A
Sbjct: 58 LMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKAC 117
Query: 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA----RRVFDENLSVLN 267
L A+E+ IHG + G + V VG L+D Y K G +++A RR+ D +L
Sbjct: 118 GLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSL---- 173
Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA--PDEYSFLAVLTALCNAGLAGESEKW 325
I+WNAM+AG+ G S L+ F +++ PDE++ ++L A + G+ + K
Sbjct: 174 -ISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMI-YAGKQ 231
Query: 326 IERMKVRYKLE-PGLEHYT-CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383
I VR P T L+ + G L A R A E W +L+ A
Sbjct: 232 IHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSA-RKAFDQIKEKTMISWSSLILGYAQ 290
Query: 384 HGKADMASKMGKRLIDINPYDDS 406
G+ A + KRL ++N DS
Sbjct: 291 EGEFVEAMGLFKRLQELNSQIDS 313
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 314 bits (805), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 187/598 (31%), Positives = 304/598 (50%), Gaps = 39/598 (6%)
Query: 14 TSTDPRIVHARALKSSQADRS-IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS 72
T T + +HA +K + N L+ Y K S++L++F+ +P + ++W ++++
Sbjct: 18 TLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLT 77
Query: 73 AHSNSPLSLNIFLSMLRHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL 131
A + + LS + S L P+ ++L K CA+L + G +H +
Sbjct: 78 ALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLG-SIDHGRQVHCHFIVSEY 136
Query: 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM------------------- 172
+ S+LV Y++ ++AK VFD IR ++ + + AM
Sbjct: 137 ANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 196
Query: 173 ------------IVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQ 219
I GF Q+ + +++ SVF +MR V +S + A A LAA
Sbjct: 197 LPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIA 256
Query: 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYA 279
R +HG + G D V + LID Y K V A+ +F + + ++W +++ G A
Sbjct: 257 GRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSR-MRHRDVVSWTSLIVGMA 315
Query: 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339
Q G L L+ + G P+E +F+ ++ A + G + + + M Y + P L
Sbjct: 316 QHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSL 375
Query: 340 EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI- 398
+HYTCL+ +GR+G L++AE + MPF PD W ALLS G+ M ++ L+
Sbjct: 376 QHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVS 435
Query: 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGD 458
D S Y++++N+ + W +V+E R+ + + VRK+ G S +EV+ + VF AG+
Sbjct: 436 SFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGE 495
Query: 459 RMHERTEDIYTKLAELMEECE-RLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517
H EDI+ L +L EE R GYVP +LH++ ++EK + L++HSE+ A+A+GL+
Sbjct: 496 TSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLL 555
Query: 518 SGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
P G +RIVKNLR+C DCH K+IS + EREI+VRD RYH F G C+C D W
Sbjct: 556 KAVP-GTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
L+ A + + +H H V G+ + + L++ YGK G S A +VFDE + +
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDE-MPHRD 68
Query: 268 SIAWNAMMAGYAQQG-DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317
IAW +++ Q T+ + G PD++ F A++ A N G
Sbjct: 69 HIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLG 119
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 179/549 (32%), Positives = 298/549 (54%), Gaps = 15/549 (2%)
Query: 35 IYNNLITNYSKSNLLSYSLRLFNHIPSPNIVS---WTALISAHS--NSPL-SLNIFLSML 88
+ + LIT +S L + ++F+ + ++++ W A+ +S SP +L +++ ML
Sbjct: 169 LLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDML 228
Query: 89 RHPTLSFL-PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147
SF+ P +++ K C L G +H+ +K + L+ Y
Sbjct: 229 ----CSFIEPGNFSISVALKACVDLKD-LRVGRGIHAQIVKRKEKVDQVVYNVLLKLYME 283
Query: 148 FRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207
D+A+KVFD + ER+VV + ++I ++ R+ + ++F M+ +G + ++
Sbjct: 284 SGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTI 343
Query: 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN 267
L A + +AA+ + IH + S +V + L+D YGK G V +RRVFD L+ +
Sbjct: 344 LPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTK-D 402
Query: 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327
+WN M+ YA G+ V+ LF + G APD +F+A+L+ + GL E
Sbjct: 403 LASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFE 462
Query: 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387
RMK +++ P LEHY CL+ +GRAG++++A ++ MPF+P A++W +LL+ +HG
Sbjct: 463 RMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNV 522
Query: 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447
+ K L + P++ YV+V+N+ + WD V ++R++MK R V+KE G SW++V
Sbjct: 523 SVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQV 582
Query: 448 KGKVHVFLAGDRMHERTEDIYTKL-AELMEECERLGYVPVWDEMLHNVGDREKREALWYH 506
K K+ +F+AG R D Y K+ EL E E+ GY P +LH+V + K + H
Sbjct: 583 KDKIQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGH 642
Query: 507 SEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLN 566
SE+LA + L+ G +RI KNLR+C DCH K +S+V R IV+RD R+H F++
Sbjct: 643 SERLATTYSLIHTG-EGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVD 701
Query: 567 GSCTCGDLW 575
G C+C D W
Sbjct: 702 GICSCKDYW 710
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 146/301 (48%), Gaps = 12/301 (3%)
Query: 105 LFKTCASLSHAFLFGLSLHSLSLK-LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163
L C S + + G+ + SL L SL P S L+ +S R D A+K+FD++ +
Sbjct: 137 LLHACIS-AKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTD 195
Query: 164 RDVVC---YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220
++ + AM +G+++N D+L V+ DM S + + +S AL+A +L +
Sbjct: 196 SSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVG 255
Query: 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
R IH V + +V L+ Y ++G+ DAR+VFD +S N + WN++++ ++
Sbjct: 256 RGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFD-GMSERNVVTWNSLISVLSK 314
Query: 281 QGDQSTVLELFHLL--EMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338
+ + LF + EM GF+ ++ L + C+ A + K I ++ K +P
Sbjct: 315 KVRVHEMFNLFRKMQEEMIGFS---WATLTTILPACSRVAALLTGKEIHAQILKSKEKPD 371
Query: 339 LEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398
+ L+ G+ G +E + R+ M D A W +L+ AI+G + + + +I
Sbjct: 372 VPLLNSLMDMYGKCGEVEYSRRVFDVM-LTKDLASWNIMLNCYAINGNIEEVINLFEWMI 430
Query: 399 D 399
+
Sbjct: 431 E 431
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 124/278 (44%), Gaps = 21/278 (7%)
Query: 19 RIVHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNS 77
R +HA+ +K + D+ +YN L+ Y +S L + ++F+ + N+V+W +LIS S
Sbjct: 256 RGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKK 315
Query: 78 PLS---LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-D 133
N+F M + + F + TL ++ C+ ++ A L G +H+ LK D
Sbjct: 316 VRVHEMFNLFRKM-QEEMIGF--SWATLTTILPACSRVA-ALLTGKEIHAQILKSKEKPD 371
Query: 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193
P S L+ Y + + +++VFD + +D+ + M+ +A N + + +++F M
Sbjct: 372 VPLLNS-LMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMI 430
Query: 194 SSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG------LIDGYG 247
S V L ++ E +G ++ + V L+D G
Sbjct: 431 ESGVAPDGITFVALLSGCSDTGLTE-----YGLSLFERMKTEFRVSPALEHYACLVDILG 485
Query: 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285
+AG + +A +V + ++ W +++ G+ S
Sbjct: 486 RAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVS 523
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 183/537 (34%), Positives = 295/537 (54%), Gaps = 18/537 (3%)
Query: 49 LSYSLRLFNHIPSPNIVSWTALI---SAHSNSPLSLNIFLSMLRHPTLSFL---PNQRTL 102
LS+++++F +IP P W A+I + S+ L+ + + SML+ + S + T
Sbjct: 53 LSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTC 112
Query: 103 ASLFKTCA-SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161
+ K CA +L + + LH + L + L+ YS+ +A K+FDE+
Sbjct: 113 SFTLKACARALCSSAMD--QLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEM 170
Query: 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR 221
RDV + A+I G +R +++ ++ M + + + V AL A + L +++
Sbjct: 171 PVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGE 230
Query: 222 -VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280
+ HG++ + NVIV ID Y K G V A +VF++ + + WN M+ G+A
Sbjct: 231 NIFHGYS-----NDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAV 285
Query: 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340
G+ LE+F LE G PD+ S+LA LTA +AGL M + +E ++
Sbjct: 286 HGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERNMK 344
Query: 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI 400
HY C++ + RAGRL +A I +M PD +W++LL S I+ +MA + + ++
Sbjct: 345 HYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEM 404
Query: 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM 460
+D +V+++NV + GRW +V VR M+ ++V+K G S+IE KG +H F D+
Sbjct: 405 GVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKS 464
Query: 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGL--VS 518
HE+ +IY K+ E+ + GYV +LH++G+ EK AL YHSEKLA+A+GL +
Sbjct: 465 HEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMD 524
Query: 519 GAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
GA +R++ NLRIC DCH FK+IS++ +REI+VRD R+HRF +GSC+C D W
Sbjct: 525 GADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 102/248 (41%), Gaps = 6/248 (2%)
Query: 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRH 90
AD + L+ YSK+ L + +LF+ +P ++ SW ALI+ + + R
Sbjct: 142 ADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRM 201
Query: 91 PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRS 150
T ++ T+ + C+ L H S +D +A + YS+
Sbjct: 202 ETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYS-----NDNVIVSNAAIDMYSKCGF 256
Query: 151 PDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209
D A +VF++ ++ VV + MI GFA + +L +F + + + AL
Sbjct: 257 VDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALT 316
Query: 210 AAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI 269
A +E + + G++RN+ ++D +AG + +A + + + +
Sbjct: 317 ACRHAGLVEYGLSVFNNMACKGVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPV 376
Query: 270 AWNAMMAG 277
W +++
Sbjct: 377 LWQSLLGA 384
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 312 bits (800), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 176/560 (31%), Positives = 292/560 (52%), Gaps = 12/560 (2%)
Query: 21 VHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
+H++ +K++ Q + + + LI Y+K L + + ++VSWT +I+ ++
Sbjct: 512 IHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 571
Query: 80 ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DKP 135
+L F ML S ++ L + CA L A G +H+ + D P
Sbjct: 572 DDKALTTFRQMLDRGIRS---DEVGLTNAVSACAGL-QALKEGQQIHAQACVSGFSSDLP 627
Query: 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195
F +ALV YSR + + F++ D + + A++ GF Q+ ++L VF M
Sbjct: 628 F-QNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686
Query: 196 DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255
+ + + A++AA+E A M+Q + +H +G D V LI Y K G +SDA
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746
Query: 256 RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315
+ F E +S N ++WNA++ Y++ G S L+ F + P+ + + VL+A +
Sbjct: 747 EKQFLE-VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSH 805
Query: 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375
GL + + E M Y L P EHY C++ + RAG L A+ MP +PDA VWR
Sbjct: 806 IGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWR 865
Query: 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435
LLS +H ++ L+++ P D + YV+++N+ + +WD R+ MK++
Sbjct: 866 TLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKG 925
Query: 436 VRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVG 495
V+KE G+SWIEVK +H F GD+ H ++I+ +L + +GYV +L+ +
Sbjct: 926 VKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQ 985
Query: 496 DREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVV 555
+K ++ HSEKLA++FGL+S P + ++KNLR+C DCH K++S+V REI+V
Sbjct: 986 HEQKDPIIFIHSEKLAISFGLLS-LPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIV 1044
Query: 556 RDVNRYHRFLNGSCTCGDLW 575
RD R+H F G+C+C D W
Sbjct: 1045 RDAYRFHHFEGGACSCKDYW 1064
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 173/398 (43%), Gaps = 7/398 (1%)
Query: 21 VHARALKSSQA-DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
+HA K A + I L+ Y+K + +L F N+V W ++ A+
Sbjct: 411 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 470
Query: 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
N F + +PNQ T S+ KTC L L G +HS +K + + S
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLEL-GEQIHSQIIKTNFQLNAYVCS 529
Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
L+ Y++ D A + +DVV + MI G+ Q + +L+ F M + S
Sbjct: 530 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589
Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
++ A+ A A L A+++ + IH A VSG ++ L+ Y + G + ++ F
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649
Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
E ++IAWNA+++G+ Q G+ L +F + G + ++F + + A
Sbjct: 650 -EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 708
Query: 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379
+ K + + + + E LIS + G + DAE+ + + + + + W A+++
Sbjct: 709 KQG-KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIIN 766
Query: 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417
+ HG A ++I N + +V + VLS
Sbjct: 767 AYSKHGFGSEALDSFDQMIHSNVRPN--HVTLVGVLSA 802
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 105/453 (23%), Positives = 196/453 (43%), Gaps = 41/453 (9%)
Query: 13 NTSTDP-RIVHARALKSS-QADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTAL 70
N S D R +H++ LK ++ + L Y L + ++F+ +P I +W +
Sbjct: 98 NGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKM 157
Query: 71 ISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS 130
I ++ L +F +R + + PN+ T + + + C S AF +H+ L
Sbjct: 158 IKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQG 217
Query: 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA 190
L D + L+ YSR D A++VFD +R +D + AMI G ++N +++ +F
Sbjct: 218 LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFC 277
Query: 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250
DM + T Y S L A ++ ++E +HG + G + V L+ Y G
Sbjct: 278 DMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG 337
Query: 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310
+ A +F N+S +++ +N ++ G +Q G +ELF + + G PD + LA L
Sbjct: 338 NLISAEHIFS-NMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNT-LASL 395
Query: 311 TALCNAG---------------LAGESEKWIE-------------RMKVRYKLEPGLEH- 341
C+A L S IE + Y LE +E+
Sbjct: 396 VVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV 455
Query: 342 --YTCLISAMGRAGRLEDAERIAMAMPFE---PDAAVWRALLSFSAIHGKADMASKMGKR 396
+ ++ A G L ++ RI M E P+ + ++L G ++ ++ +
Sbjct: 456 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 515
Query: 397 LIDINPYDDSAYV--IVANVLSGVGRWDEVAEV 427
+I N + +AYV ++ ++ + +G+ D ++
Sbjct: 516 IIKTN-FQLNAYVCSVLIDMYAKLGKLDTAWDI 547
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 138/312 (44%), Gaps = 24/312 (7%)
Query: 97 PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKK 156
PN +TL L + C + + G LHS LKL L L FY A K
Sbjct: 82 PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 141
Query: 157 VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA-AELA 215
VFDE+ ER + + MI A + + + +F M S +V SG L A
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201
Query: 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMM 275
A + IH + GL + +V LID Y + G V ARRVFD L + + +W AM+
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFD-GLRLKDHSSWVAMI 260
Query: 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335
+G ++ ++ + LF + + G P Y+F +VL+A K IE +++ +L
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC----------KKIESLEIGEQL 310
Query: 336 EPGL--------EHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385
GL + Y C L+S G L AE I M + DA + L++ + G
Sbjct: 311 H-GLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCG 368
Query: 386 KADMASKMGKRL 397
+ A ++ KR+
Sbjct: 369 YGEKAMELFKRM 380
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 160/385 (41%), Gaps = 15/385 (3%)
Query: 21 VHARALKSSQADRSIY-NNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
+HAR L D ++ N LI YS++ + + R+F+ + + SW A+IS S +
Sbjct: 209 IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 268
Query: 80 ---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF 136
++ +F M L +P +S+ C + + G LH L LKL +
Sbjct: 269 EAEAIRLFCDMY---VLGIMPTPYAFSSVLSACKKI-ESLEIGEQLHGLVLKLGFSSDTY 324
Query: 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196
+ALV Y + +A+ +F + +RD V Y +I G +Q ++ +F M
Sbjct: 325 VCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDG 384
Query: 197 VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256
+ ++ + A + + + + +H + G N + L++ Y K + A
Sbjct: 385 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 444
Query: 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316
F E V N + WN M+ Y D +F +++ P++Y++ ++L
Sbjct: 445 DYFLET-EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRL 503
Query: 317 GLAGESEKWIERMKVRYKLEPGLEHYTC--LISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
G E+ I ++ + L Y C LI + G+L+ A I + D W
Sbjct: 504 GDLELGEQ-IHSQIIKTNFQ--LNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSW 559
Query: 375 RALLSFSAIHGKADMASKMGKRLID 399
+++ + D A ++++D
Sbjct: 560 TTMIAGYTQYNFDDKALTTFRQMLD 584
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/413 (23%), Positives = 162/413 (39%), Gaps = 11/413 (2%)
Query: 21 VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
+H LK +D + N L++ Y L + +F+++ + V++ LI+ S
Sbjct: 310 LHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGY 369
Query: 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139
R P+ TLASL C++ F G LH+ + KL
Sbjct: 370 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFR-GQQLHAYTTKLGFASNNKIEG 428
Query: 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199
AL++ Y++ + A F E +VV + M+V + L +S +F M+ ++
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 488
Query: 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259
Y L+ L +E IH + + N V + LID Y K G + A +
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548
Query: 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319
+ + ++W M+AGY Q L F + RG DE ++A AGL
Sbjct: 549 IR-FAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC--AGLQ 605
Query: 320 GESE-KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378
E + I L L++ R G++E++ +A D W AL+
Sbjct: 606 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES-YLAFEQTEAGDNIAWNALV 664
Query: 379 SFSAIHGKADMA----SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427
S G + A +M + ID N + + V A+ + + + +V V
Sbjct: 665 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 717
>sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570
OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1
Length = 738
Score = 311 bits (798), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 180/525 (34%), Positives = 286/525 (54%), Gaps = 13/525 (2%)
Query: 55 LFNHIPSPNIVSWTALISAHSNS---PLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111
+ + + ++V TALI +S ++ F SML PN+ T AS+ +C +
Sbjct: 223 VLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQ---PNEYTYASVLISCGN 279
Query: 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGA 171
L G +H L +K ++L+ Y R D++ +VF I + V + +
Sbjct: 280 LKD-IGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTS 338
Query: 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231
+I G QN R +L F M + + +S ALR + LA E+ R IHG G
Sbjct: 339 LISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYG 398
Query: 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF 291
DR+ G+GLID YGK G AR VFD LS ++ I+ N M+ YAQ G L+LF
Sbjct: 399 FDRDKYAGSGLIDLYGKCGCSDMARLVFD-TLSEVDVISLNTMIYSYAQNGFGREALDLF 457
Query: 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR 351
+ G P++ + L+VL A N+ L E + + + + K+ +HY C++ +GR
Sbjct: 458 ERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFR-KDKIMLTNDHYACMVDLLGR 516
Query: 352 AGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411
AGRLE+AE + + PD +WR LLS +H K +MA ++ +++++I P D+ +++
Sbjct: 517 AGRLEEAEMLTTEV-INPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILM 575
Query: 412 ANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRM-HERTEDIYTK 470
+N+ + G+W+ V E++ MKD +++K SW+E+ + H F+AGD H +E I
Sbjct: 576 SNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILEN 635
Query: 471 LAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVK 530
L EL+++ + LGYV + ++ + K +L HSEKLA+AF + G ++RI+K
Sbjct: 636 LEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNV--GGSIRILK 693
Query: 531 NLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
NLR+C DCH K +SRV++REI+ RD R+H F +GSC+CGD W
Sbjct: 694 NLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGDYW 738
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 177/392 (45%), Gaps = 13/392 (3%)
Query: 19 RIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALIS---AHS 75
+ + A LKS + L+ K + Y+ ++F+ + +IV+W +LI+ H
Sbjct: 85 KTIQAHMLKSGFPAEISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHR 144
Query: 76 NSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH-DK 134
S ++ ++ M+ T + LP++ TL+S+FK + LS S H L++ L L
Sbjct: 145 RSKEAVEMYRLMI---TNNVLPDEYTLSSVFKAFSDLSLEKEAQRS-HGLAVILGLEVSN 200
Query: 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194
F GSALV Y +F AK V D + E+DVV A+IVG++Q +++ F M
Sbjct: 201 VFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLV 260
Query: 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254
V Y + L + L + ++IHG V SG + + T L+ Y + +V D
Sbjct: 261 EKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDD 320
Query: 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314
+ RVF + + N ++W ++++G Q G + L F + P+ ++ + L
Sbjct: 321 SLRVF-KCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCS 379
Query: 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374
N + E + I + +Y + + LI G+ G D R+ E D
Sbjct: 380 NLAMFEEGRQ-IHGIVTKYGFDRDKYAGSGLIDLYGKCG-CSDMARLVFDTLSEVDVISL 437
Query: 375 RALLSFSAIHGKADMASKMGKRLID--INPYD 404
++ A +G A + +R+I+ + P D
Sbjct: 438 NTMIYSYAQNGFGREALDLFERMINLGLQPND 469
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/591 (29%), Positives = 307/591 (51%), Gaps = 37/591 (6%)
Query: 21 VHARALK-SSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL 79
+H A K ++ D + + Y+ ++Y+ +F+ + ++V+W +I + L
Sbjct: 133 LHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGL 192
Query: 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS--------HAFLFG----LSLHSLSL 127
F + +P++ L ++ C + FL + H L+
Sbjct: 193 VDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTA 252
Query: 128 KLSLHDKPFC------------------GSALVHFYSRFRSPDNAKKVFDEIRERDVVCY 169
++++ C +A+V YS+ D+A+ +FD+ ++D+VC+
Sbjct: 253 LVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCW 312
Query: 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229
MI + ++ ++L VF +M S + + + + A A L +++ + +H V
Sbjct: 313 TTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHV 372
Query: 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLE 289
+GL+ + + LI+ Y K G + R VF E + N ++W++M+ + G+ S L
Sbjct: 373 NGLESELSINNALINMYAKCGGLDATRDVF-EKMPRRNVVSWSSMINALSMHGEASDALS 431
Query: 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349
LF ++ P+E +F+ VL ++GL E +K M Y + P LEHY C++
Sbjct: 432 LFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLF 491
Query: 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409
GRA L +A + +MP + +W +L+S IHG+ ++ KR++++ P D A V
Sbjct: 492 GRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALV 551
Query: 410 IVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYT 469
+++N+ + RW++V +R+VM+++ V KE G S I+ GK H FL GD+ H+++ +IY
Sbjct: 552 LMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYA 611
Query: 470 KLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGK----- 524
KL E++ + + GYVP +L +V + EK++ + +HSEKLAL FGL++ +
Sbjct: 612 KLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCG 671
Query: 525 TLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYHRFLNGSCTCGDLW 575
+RIVKNLR+C DCH FK +S+V EREI+VRD R+H + NG C+C D W
Sbjct: 672 VIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/420 (23%), Positives = 176/420 (41%), Gaps = 52/420 (12%)
Query: 51 YSLRLFNHIPSP--NIVSWTALIS-AHSNSPLSLNIFLSMLRH-----PTLSFLPNQRTL 102
Y+L +F+ IPSP +IV L + S+ P + +F +RH SFLP
Sbjct: 62 YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLP----- 116
Query: 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162
+ K + +S A G+ LH ++ K++ PF + + Y+ + A+ VFDE+
Sbjct: 117 --ILKAVSKVS-ALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMS 173
Query: 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222
RDVV + MI + + + ++ +F +M+ S+V + + A M R
Sbjct: 174 HRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRA 233
Query: 223 IHG--------------------HAVVSGLD-----------RNVIVGTGLIDGYGKAGI 251
I+ +A +D RN+ V T ++ GY K G
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293
Query: 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311
+ DA+ +FD+ + + W M++ Y + L +F + G PD S +V++
Sbjct: 294 LDDAQVIFDQT-EKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVIS 352
Query: 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDA 371
A N G+ ++ KW+ LE L LI+ + G L+ + MP +
Sbjct: 353 ACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNV 410
Query: 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431
W ++++ ++HG+A A + R+ N + V VL G V E +K+
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARMKQENVEPNE--VTFVGVLYGCSHSGLVEEGKKIF 468
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,461,520
Number of Sequences: 539616
Number of extensions: 8516481
Number of successful extensions: 27268
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 21789
Number of HSP's gapped (non-prelim): 1818
length of query: 575
length of database: 191,569,459
effective HSP length: 123
effective length of query: 452
effective length of database: 125,196,691
effective search space: 56588904332
effective search space used: 56588904332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)