Query 008183
Match_columns 575
No_of_seqs 637 out of 3977
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 20:32:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1E-113 3E-118 928.7 62.0 563 7-575 131-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1E-107 3E-112 903.0 61.1 559 6-573 295-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 9.4E-74 2E-78 632.9 39.4 542 8-569 95-678 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.5E-63 5.4E-68 540.1 46.9 507 31-554 368-912 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 6.4E-63 1.4E-67 534.1 42.3 487 61-569 84-582 (697)
6 PLN03218 maturation of RBCL 1; 100.0 6.9E-61 1.5E-65 521.0 50.5 429 6-441 444-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-24 1.1E-28 240.3 46.9 413 11-436 443-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 6.3E-24 1.4E-28 239.6 45.2 411 11-434 409-832 (899)
9 PF14432 DYW_deaminase: DYW fa 99.9 3.3E-26 7.2E-31 183.5 7.5 106 441-565 2-116 (116)
10 PRK11788 tetratricopeptide rep 99.9 3.1E-19 6.8E-24 181.2 31.1 292 144-441 44-354 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 9.8E-19 2.1E-23 170.1 29.6 377 33-423 116-508 (966)
12 PRK11788 tetratricopeptide rep 99.9 1.7E-18 3.6E-23 175.9 32.4 285 109-399 45-346 (389)
13 PRK11447 cellulose synthase su 99.8 3E-16 6.4E-21 179.1 46.7 407 13-438 283-745 (1157)
14 KOG4626 O-linked N-acetylgluco 99.8 1.8E-17 3.9E-22 161.5 29.9 353 66-434 118-485 (966)
15 PRK11447 cellulose synthase su 99.8 4E-16 8.7E-21 178.0 42.9 384 40-435 276-701 (1157)
16 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-15 3.7E-20 162.2 43.6 388 36-434 130-571 (615)
17 PRK15174 Vi polysaccharide exp 99.8 1.4E-15 3.1E-20 162.4 38.5 349 45-405 17-386 (656)
18 PRK15174 Vi polysaccharide exp 99.8 1.2E-15 2.6E-20 163.1 37.6 328 98-435 41-382 (656)
19 PRK10049 pgaA outer membrane p 99.8 6.3E-15 1.4E-19 160.9 42.3 394 31-434 13-456 (765)
20 PRK09782 bacteriophage N4 rece 99.8 8.9E-14 1.9E-18 152.2 45.9 212 218-435 493-707 (987)
21 PRK10049 pgaA outer membrane p 99.7 3.4E-14 7.3E-19 155.2 42.2 385 12-407 28-463 (765)
22 TIGR00990 3a0801s09 mitochondr 99.7 3.5E-14 7.7E-19 152.1 34.4 216 215-434 308-537 (615)
23 PRK14574 hmsH outer membrane p 99.7 6.1E-13 1.3E-17 142.8 42.5 193 242-435 298-514 (822)
24 KOG4422 Uncharacterized conser 99.7 1.4E-12 2.9E-17 122.6 37.6 384 10-401 126-591 (625)
25 PRK14574 hmsH outer membrane p 99.6 6.8E-12 1.5E-16 134.9 41.4 387 11-407 46-520 (822)
26 PRK09782 bacteriophage N4 rece 99.6 8.7E-12 1.9E-16 136.8 41.7 380 38-436 318-742 (987)
27 PF13429 TPR_15: Tetratricopep 99.5 3.3E-14 7.2E-19 136.9 11.9 256 172-432 14-275 (280)
28 KOG4422 Uncharacterized conser 99.5 2.1E-10 4.5E-15 108.2 33.6 396 33-436 116-592 (625)
29 KOG2002 TPR-containing nuclear 99.5 4E-10 8.7E-15 116.7 35.9 423 15-448 146-607 (1018)
30 KOG2003 TPR repeat-containing 99.5 5.1E-11 1.1E-15 112.9 26.1 402 7-420 209-709 (840)
31 KOG2076 RNA polymerase III tra 99.5 4E-10 8.7E-15 115.9 33.3 329 112-445 152-523 (895)
32 PRK10747 putative protoheme IX 99.4 1.8E-10 3.9E-15 116.2 29.9 274 148-432 97-388 (398)
33 KOG1126 DNA-binding cell divis 99.4 3E-11 6.5E-16 120.3 22.7 277 150-436 334-622 (638)
34 KOG2002 TPR-containing nuclear 99.4 1E-09 2.2E-14 113.7 33.4 91 339-429 646-740 (1018)
35 KOG1915 Cell cycle control pro 99.4 1.3E-08 2.7E-13 97.6 36.5 387 44-445 84-511 (677)
36 PRK10747 putative protoheme IX 99.4 1.8E-09 3.9E-14 109.1 33.4 277 113-401 98-391 (398)
37 KOG1126 DNA-binding cell divis 99.4 8.9E-11 1.9E-15 117.0 22.7 280 116-405 335-625 (638)
38 TIGR00540 hemY_coli hemY prote 99.4 2.5E-09 5.4E-14 108.6 33.9 278 115-399 99-398 (409)
39 KOG1915 Cell cycle control pro 99.4 1.6E-08 3.4E-13 97.0 35.9 410 12-435 86-537 (677)
40 PF13429 TPR_15: Tetratricopep 99.4 6.5E-12 1.4E-16 121.0 13.5 211 115-329 59-274 (280)
41 KOG0495 HAT repeat protein [RN 99.4 4.5E-08 9.9E-13 97.4 39.9 417 15-446 422-890 (913)
42 TIGR00540 hemY_coli hemY prote 99.4 1.8E-09 3.9E-14 109.6 31.0 291 66-365 84-396 (409)
43 KOG0495 HAT repeat protein [RN 99.3 2.5E-08 5.4E-13 99.3 36.8 387 10-412 490-892 (913)
44 PF13041 PPR_2: PPR repeat fam 99.3 2.7E-12 5.8E-17 87.2 6.6 50 266-315 1-50 (50)
45 PF13041 PPR_2: PPR repeat fam 99.3 3.5E-12 7.6E-17 86.6 6.0 50 164-213 1-50 (50)
46 TIGR02521 type_IV_pilW type IV 99.3 5.4E-10 1.2E-14 104.3 23.1 198 235-433 30-231 (234)
47 KOG1155 Anaphase-promoting com 99.3 2.3E-08 4.9E-13 95.8 33.5 320 31-364 162-491 (559)
48 KOG4318 Bicoid mRNA stability 99.3 5.3E-11 1.2E-15 121.5 16.7 264 187-491 11-275 (1088)
49 KOG1155 Anaphase-promoting com 99.3 4.2E-08 9.2E-13 94.0 32.3 253 175-433 236-494 (559)
50 KOG1840 Kinesin light chain [C 99.3 4.9E-09 1.1E-13 105.7 27.4 231 202-432 200-477 (508)
51 KOG2076 RNA polymerase III tra 99.2 5.5E-08 1.2E-12 100.5 33.9 343 46-398 152-553 (895)
52 KOG1174 Anaphase-promoting com 99.2 1.4E-07 3E-12 89.1 33.6 366 36-407 100-507 (564)
53 KOG0547 Translocase of outer m 99.2 1.8E-08 4E-13 97.0 28.3 214 214-432 339-564 (606)
54 COG3071 HemY Uncharacterized e 99.2 6.8E-08 1.5E-12 91.2 31.2 274 148-432 97-388 (400)
55 KOG4318 Bicoid mRNA stability 99.2 2.1E-09 4.6E-14 110.1 21.3 256 82-354 11-286 (1088)
56 COG3071 HemY Uncharacterized e 99.2 2.7E-08 5.9E-13 93.8 27.0 278 112-399 97-389 (400)
57 PRK12370 invasion protein regu 99.2 1.2E-08 2.6E-13 107.7 26.7 259 165-435 255-536 (553)
58 COG2956 Predicted N-acetylgluc 99.1 1.9E-07 4.2E-12 85.6 28.4 130 248-380 192-324 (389)
59 TIGR02521 type_IV_pilW type IV 99.1 3.4E-08 7.3E-13 92.1 24.1 159 168-329 33-195 (234)
60 COG2956 Predicted N-acetylgluc 99.1 9.4E-08 2E-12 87.6 25.4 302 148-455 48-368 (389)
61 KOG1840 Kinesin light chain [C 99.1 2.2E-08 4.7E-13 101.1 22.9 193 207-399 247-478 (508)
62 KOG1129 TPR repeat-containing 99.1 1.3E-08 2.8E-13 93.1 18.4 230 170-434 227-458 (478)
63 PRK12370 invasion protein regu 99.1 3.3E-08 7.2E-13 104.4 24.1 228 200-434 255-502 (553)
64 KOG2003 TPR repeat-containing 99.1 2.5E-07 5.4E-12 88.3 26.9 345 80-434 220-689 (840)
65 KOG1173 Anaphase-promoting com 99.1 3.2E-07 7E-12 90.3 27.8 262 165-432 243-516 (611)
66 KOG4162 Predicted calmodulin-b 99.0 1.5E-06 3.3E-11 88.7 31.1 391 31-433 321-782 (799)
67 PRK11189 lipoprotein NlpI; Pro 99.0 1.9E-07 4.1E-12 90.3 22.3 219 178-404 38-269 (296)
68 KOG0547 Translocase of outer m 99.0 2.2E-06 4.7E-11 83.1 28.6 218 177-401 337-567 (606)
69 KOG2047 mRNA splicing factor [ 98.9 1.6E-05 3.5E-10 79.7 35.1 384 33-424 248-713 (835)
70 PRK11189 lipoprotein NlpI; Pro 98.9 5.5E-07 1.2E-11 87.0 24.9 91 169-261 67-157 (296)
71 KOG2047 mRNA splicing factor [ 98.9 6.2E-05 1.3E-09 75.7 37.2 401 17-433 156-686 (835)
72 KOG1129 TPR repeat-containing 98.9 1.4E-07 3.1E-12 86.4 17.0 197 234-435 221-425 (478)
73 COG3063 PilF Tfp pilus assembl 98.9 4.1E-07 8.9E-12 79.8 18.2 162 271-436 38-204 (250)
74 PF04733 Coatomer_E: Coatomer 98.8 3.7E-07 8.1E-12 87.0 17.6 148 278-434 112-265 (290)
75 KOG1173 Anaphase-promoting com 98.8 6.1E-06 1.3E-10 81.5 26.0 283 95-384 240-535 (611)
76 PF12569 NARP1: NMDA receptor- 98.8 4.1E-06 9E-11 85.8 25.9 147 287-436 130-293 (517)
77 PF12569 NARP1: NMDA receptor- 98.8 1.1E-05 2.3E-10 82.9 27.9 281 145-432 14-332 (517)
78 COG3063 PilF Tfp pilus assembl 98.7 3.4E-06 7.3E-11 74.2 20.0 195 204-402 38-238 (250)
79 cd05804 StaR_like StaR_like; a 98.7 3E-05 6.5E-10 77.6 30.0 293 138-435 9-337 (355)
80 KOG0985 Vesicle coat protein c 98.7 8.2E-05 1.8E-09 78.3 32.5 242 18-292 966-1218(1666)
81 KOG2376 Signal recognition par 98.7 0.00042 9.2E-09 69.3 36.0 396 14-431 27-517 (652)
82 KOG1174 Anaphase-promoting com 98.7 5.6E-05 1.2E-09 72.0 28.6 291 137-434 196-500 (564)
83 PF12854 PPR_1: PPR repeat 98.7 3.1E-08 6.7E-13 60.3 4.2 34 129-162 1-34 (34)
84 KOG1125 TPR repeat-containing 98.7 6.8E-07 1.5E-11 88.4 15.0 219 212-433 296-526 (579)
85 KOG1070 rRNA processing protei 98.6 5E-06 1.1E-10 89.9 20.9 202 233-438 1455-1667(1710)
86 PF12854 PPR_1: PPR repeat 98.6 4.4E-08 9.6E-13 59.6 3.4 33 28-60 1-34 (34)
87 cd05804 StaR_like StaR_like; a 98.6 0.00014 3E-09 72.8 30.6 252 144-400 52-336 (355)
88 PF04733 Coatomer_E: Coatomer 98.6 3.9E-06 8.5E-11 80.1 18.1 247 147-406 13-271 (290)
89 KOG4340 Uncharacterized conser 98.6 0.00014 3.1E-09 66.3 25.9 380 35-433 12-442 (459)
90 KOG0624 dsRNA-activated protei 98.5 0.0001 2.2E-09 68.6 25.0 287 142-434 45-370 (504)
91 KOG1156 N-terminal acetyltrans 98.5 0.0011 2.4E-08 67.1 33.4 347 80-436 60-470 (700)
92 KOG3616 Selective LIM binding 98.5 7.2E-05 1.6E-09 76.1 24.8 215 177-428 717-931 (1636)
93 KOG4340 Uncharacterized conser 98.5 3.8E-05 8.2E-10 70.0 20.4 82 348-430 250-335 (459)
94 PRK04841 transcriptional regul 98.5 0.0006 1.3E-08 77.5 35.6 258 143-401 460-761 (903)
95 KOG4162 Predicted calmodulin-b 98.5 0.00051 1.1E-08 70.8 30.0 93 343-435 654-750 (799)
96 PRK04841 transcriptional regul 98.5 0.00029 6.4E-09 80.0 32.1 299 137-435 411-761 (903)
97 TIGR03302 OM_YfiO outer membra 98.4 3.4E-05 7.4E-10 72.1 19.7 182 235-434 32-232 (235)
98 KOG3785 Uncharacterized conser 98.4 0.0018 3.9E-08 60.8 33.0 387 35-445 59-498 (557)
99 KOG1128 Uncharacterized conser 98.4 3.4E-05 7.4E-10 78.7 20.0 190 231-436 393-584 (777)
100 KOG1070 rRNA processing protei 98.4 9.7E-05 2.1E-09 80.5 23.8 222 96-320 1455-1688(1710)
101 KOG3617 WD40 and TPR repeat-co 98.4 0.0013 2.8E-08 68.3 30.1 349 31-428 724-1168(1416)
102 KOG0985 Vesicle coat protein c 98.4 0.00068 1.5E-08 71.7 28.4 363 10-426 849-1241(1666)
103 PLN02789 farnesyltranstransfer 98.3 0.0003 6.5E-09 68.2 24.0 228 168-432 39-300 (320)
104 KOG1128 Uncharacterized conser 98.3 2.8E-05 6E-10 79.3 17.1 211 206-435 403-617 (777)
105 PRK10370 formate-dependent nit 98.3 4.7E-05 1E-09 68.6 17.0 117 316-435 52-174 (198)
106 PRK15179 Vi polysaccharide bio 98.3 0.00011 2.5E-09 78.4 22.0 140 266-410 84-227 (694)
107 KOG3785 Uncharacterized conser 98.3 0.00077 1.7E-08 63.2 23.9 106 31-144 118-228 (557)
108 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.3E-11 53.7 4.3 34 167-200 1-34 (35)
109 TIGR00756 PPR pentatricopeptid 98.3 1.7E-06 3.8E-11 53.4 4.6 35 269-303 1-35 (35)
110 TIGR03302 OM_YfiO outer membra 98.3 0.00013 2.8E-09 68.3 19.3 181 200-402 32-234 (235)
111 KOG0548 Molecular co-chaperone 98.3 0.0013 2.9E-08 65.1 26.3 370 42-435 11-456 (539)
112 KOG3616 Selective LIM binding 98.2 0.0025 5.3E-08 65.4 28.5 254 147-433 744-1023(1636)
113 KOG2376 Signal recognition par 98.2 0.0085 1.8E-07 60.3 30.7 332 73-429 21-400 (652)
114 PRK10370 formate-dependent nit 98.2 0.00023 5.1E-09 64.1 18.5 153 243-408 23-181 (198)
115 KOG1156 N-terminal acetyltrans 98.2 0.011 2.4E-07 60.2 35.8 407 13-431 55-508 (700)
116 PRK15359 type III secretion sy 98.2 8.8E-05 1.9E-09 63.1 14.7 106 306-414 27-135 (144)
117 COG5010 TadD Flp pilus assembl 98.2 0.00034 7.4E-09 63.1 18.4 153 273-428 71-225 (257)
118 PLN02789 farnesyltranstransfer 98.1 0.0033 7.2E-08 61.0 26.5 209 137-351 39-267 (320)
119 PF13812 PPR_3: Pentatricopept 98.1 4.1E-06 8.9E-11 51.3 4.2 34 166-199 1-34 (34)
120 COG4783 Putative Zn-dependent 98.1 0.0015 3.2E-08 64.3 23.5 174 252-432 253-435 (484)
121 PRK15359 type III secretion sy 98.1 3.6E-05 7.7E-10 65.5 11.2 99 335-435 22-122 (144)
122 KOG1125 TPR repeat-containing 98.1 0.00025 5.4E-09 70.7 18.2 242 176-424 295-561 (579)
123 PF13812 PPR_3: Pentatricopept 98.1 6E-06 1.3E-10 50.6 4.5 33 269-301 2-34 (34)
124 PRK14720 transcript cleavage f 98.1 0.00095 2.1E-08 72.3 23.2 44 373-416 225-268 (906)
125 KOG0624 dsRNA-activated protei 98.0 0.014 3.1E-07 54.8 29.6 277 143-435 80-395 (504)
126 KOG3617 WD40 and TPR repeat-co 98.0 0.0007 1.5E-08 70.1 19.2 241 132-398 723-994 (1416)
127 KOG0548 Molecular co-chaperone 98.0 0.0057 1.2E-07 60.8 24.6 341 75-434 13-421 (539)
128 COG5010 TadD Flp pilus assembl 97.9 0.00034 7.4E-09 63.2 14.3 135 299-435 62-198 (257)
129 PRK15363 pathogenicity island 97.9 0.00013 2.8E-09 61.3 10.8 95 339-433 35-131 (157)
130 COG4783 Putative Zn-dependent 97.9 0.0037 8E-08 61.6 22.3 179 234-435 272-455 (484)
131 TIGR02552 LcrH_SycD type III s 97.9 0.00016 3.5E-09 60.9 11.4 100 335-434 12-114 (135)
132 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00041 8.8E-09 68.7 15.5 125 137-264 171-295 (395)
133 PRK15179 Vi polysaccharide bio 97.9 0.0032 6.9E-08 67.5 23.2 142 165-310 85-229 (694)
134 KOG1127 TPR repeat-containing 97.9 0.0048 1.1E-07 65.6 23.4 389 18-430 475-909 (1238)
135 PF01535 PPR: PPR repeat; Int 97.9 1.6E-05 3.5E-10 47.4 3.4 31 167-197 1-31 (31)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00035 7.6E-09 69.1 14.5 122 306-432 172-295 (395)
137 PF01535 PPR: PPR repeat; Int 97.9 1.8E-05 3.8E-10 47.2 3.5 31 269-299 1-31 (31)
138 PRK14720 transcript cleavage f 97.9 0.015 3.3E-07 63.3 27.6 235 99-382 31-268 (906)
139 KOG3081 Vesicle coat complex C 97.8 0.0051 1.1E-07 55.8 19.1 147 277-433 117-270 (299)
140 TIGR02552 LcrH_SycD type III s 97.7 0.0014 3.1E-08 55.1 13.7 88 208-296 24-113 (135)
141 KOG1914 mRNA cleavage and poly 97.7 0.079 1.7E-06 53.1 35.1 400 25-433 12-500 (656)
142 KOG3081 Vesicle coat complex C 97.7 0.0076 1.7E-07 54.7 18.0 141 289-436 94-238 (299)
143 cd00189 TPR Tetratricopeptide 97.6 0.0005 1.1E-08 53.1 9.8 92 342-433 3-96 (100)
144 KOG1127 TPR repeat-containing 97.6 0.019 4.2E-07 61.3 22.9 86 357-445 801-888 (1238)
145 PF09976 TPR_21: Tetratricopep 97.6 0.0025 5.4E-08 54.4 13.9 114 316-430 24-143 (145)
146 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0016 3.5E-08 53.1 12.1 101 307-407 6-112 (119)
147 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.7E-08 51.4 10.2 81 168-248 27-116 (120)
148 KOG3060 Uncharacterized conser 97.5 0.035 7.5E-07 50.2 19.8 126 279-407 97-227 (289)
149 PF12895 Apc3: Anaphase-promot 97.5 0.00013 2.7E-09 55.7 4.2 78 352-430 2-83 (84)
150 PF04840 Vps16_C: Vps16, C-ter 97.5 0.11 2.3E-06 50.4 25.8 112 303-431 177-288 (319)
151 PF09976 TPR_21: Tetratricopep 97.5 0.0077 1.7E-07 51.3 15.4 122 274-397 18-144 (145)
152 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0016 3.5E-08 53.2 10.9 96 340-435 3-106 (119)
153 KOG1914 mRNA cleavage and poly 97.4 0.17 3.6E-06 50.9 33.0 368 62-439 18-469 (656)
154 PF14938 SNAP: Soluble NSF att 97.4 0.019 4.1E-07 55.1 19.0 128 239-366 117-264 (282)
155 KOG3060 Uncharacterized conser 97.4 0.014 3.1E-07 52.6 16.3 180 250-433 26-219 (289)
156 PF13414 TPR_11: TPR repeat; P 97.4 0.00054 1.2E-08 49.8 6.2 64 370-433 2-66 (69)
157 PF14938 SNAP: Soluble NSF att 97.4 0.022 4.7E-07 54.7 18.5 210 150-400 30-266 (282)
158 PF10037 MRP-S27: Mitochondria 97.3 0.0031 6.7E-08 62.8 12.5 118 132-249 63-186 (429)
159 PF10037 MRP-S27: Mitochondria 97.3 0.0032 6.9E-08 62.8 12.0 131 83-214 50-186 (429)
160 PF13432 TPR_16: Tetratricopep 97.3 0.00079 1.7E-08 48.3 5.8 58 377-434 3-60 (65)
161 PLN03088 SGT1, suppressor of 97.3 0.0018 3.8E-08 64.3 10.3 102 310-414 9-113 (356)
162 PRK10153 DNA-binding transcrip 97.3 0.012 2.7E-07 61.1 16.7 66 340-405 421-487 (517)
163 PF08579 RPM2: Mitochondrial r 97.3 0.0039 8.5E-08 48.7 9.7 80 271-351 28-116 (120)
164 KOG1538 Uncharacterized conser 97.2 0.07 1.5E-06 54.5 20.6 230 102-398 601-844 (1081)
165 PRK02603 photosystem I assembl 97.2 0.0096 2.1E-07 52.4 13.6 130 267-420 34-166 (172)
166 PF06239 ECSIT: Evolutionarily 97.2 0.0029 6.4E-08 55.8 9.8 91 264-355 43-154 (228)
167 KOG2053 Mitochondrial inherita 97.2 0.42 9E-06 51.1 37.3 403 16-439 26-507 (932)
168 PF05843 Suf: Suppressor of fo 97.2 0.019 4.1E-07 55.0 16.2 134 269-405 2-141 (280)
169 PRK02603 photosystem I assembl 97.2 0.005 1.1E-07 54.2 11.0 81 340-420 36-121 (172)
170 CHL00033 ycf3 photosystem I as 97.1 0.0039 8.4E-08 54.7 10.0 93 339-431 35-139 (168)
171 PLN03088 SGT1, suppressor of 97.1 0.0082 1.8E-07 59.6 13.1 101 274-378 8-110 (356)
172 PF13432 TPR_16: Tetratricopep 97.1 0.002 4.4E-08 46.1 6.6 61 345-405 3-65 (65)
173 PF14559 TPR_19: Tetratricopep 97.1 0.00085 1.8E-08 48.6 4.5 53 382-434 2-54 (68)
174 cd00189 TPR Tetratricopeptide 97.1 0.0078 1.7E-07 46.1 10.2 22 172-193 6-27 (100)
175 PF05843 Suf: Suppressor of fo 97.0 0.018 3.8E-07 55.2 14.2 127 168-296 3-135 (280)
176 PF07079 DUF1347: Protein of u 97.0 0.42 9.2E-06 47.1 28.0 72 360-432 445-522 (549)
177 COG4235 Cytochrome c biogenesi 97.0 0.012 2.7E-07 54.7 12.0 101 336-436 152-258 (287)
178 COG3898 Uncharacterized membra 97.0 0.38 8.3E-06 46.4 23.8 283 138-434 85-392 (531)
179 PF12895 Apc3: Anaphase-promot 97.0 0.0023 5E-08 48.6 6.2 80 281-364 2-83 (84)
180 KOG0553 TPR repeat-containing 97.0 0.0084 1.8E-07 55.5 10.7 92 313-407 91-185 (304)
181 KOG0553 TPR repeat-containing 97.0 0.0027 5.9E-08 58.7 7.4 86 348-433 90-177 (304)
182 PRK10866 outer membrane biogen 97.0 0.21 4.6E-06 46.6 20.2 53 143-195 40-98 (243)
183 PF13371 TPR_9: Tetratricopept 96.9 0.0028 6E-08 46.6 6.2 57 379-435 3-59 (73)
184 PF06239 ECSIT: Evolutionarily 96.9 0.0079 1.7E-07 53.2 9.4 98 154-251 33-153 (228)
185 PRK15331 chaperone protein Sic 96.8 0.0099 2.2E-07 50.4 9.3 89 345-433 43-133 (165)
186 KOG1130 Predicted G-alpha GTPa 96.8 0.01 2.2E-07 57.1 10.2 257 176-432 27-342 (639)
187 PF04840 Vps16_C: Vps16, C-ter 96.8 0.57 1.2E-05 45.5 29.9 110 238-365 179-288 (319)
188 KOG0550 Molecular chaperone (D 96.7 0.045 9.8E-07 52.9 13.9 160 269-434 169-350 (486)
189 KOG2280 Vacuolar assembly/sort 96.7 1 2.2E-05 47.4 24.9 315 95-428 428-793 (829)
190 PRK15363 pathogenicity island 96.7 0.05 1.1E-06 46.0 12.3 94 239-333 38-133 (157)
191 PRK10153 DNA-binding transcrip 96.7 0.078 1.7E-06 55.2 16.2 134 298-435 332-483 (517)
192 KOG2041 WD40 repeat protein [G 96.6 0.21 4.5E-06 51.7 18.3 249 151-434 679-952 (1189)
193 PF13414 TPR_11: TPR repeat; P 96.6 0.0048 1E-07 44.7 5.4 64 339-402 3-69 (69)
194 PF14559 TPR_19: Tetratricopep 96.6 0.0026 5.7E-08 46.0 3.9 53 352-404 4-58 (68)
195 PF13281 DUF4071: Domain of un 96.6 0.56 1.2E-05 46.1 20.4 96 240-339 145-259 (374)
196 CHL00033 ycf3 photosystem I as 96.6 0.056 1.2E-06 47.3 12.8 64 167-230 36-101 (168)
197 COG4700 Uncharacterized protei 96.6 0.44 9.6E-06 41.2 16.9 132 299-432 85-220 (251)
198 PF03704 BTAD: Bacterial trans 96.5 0.0076 1.6E-07 51.4 6.9 69 372-440 63-136 (146)
199 PF12688 TPR_5: Tetratrico pep 96.5 0.12 2.6E-06 42.0 13.1 91 274-364 7-100 (120)
200 KOG2280 Vacuolar assembly/sort 96.4 1.3 2.8E-05 46.6 22.7 88 36-125 440-532 (829)
201 PF12688 TPR_5: Tetratrico pep 96.4 0.13 2.9E-06 41.7 12.6 59 172-230 7-67 (120)
202 PF12921 ATP13: Mitochondrial 96.3 0.013 2.9E-07 48.0 6.8 52 298-349 47-98 (126)
203 KOG1920 IkappaB kinase complex 96.3 1.2 2.6E-05 49.4 22.8 158 149-366 894-1053(1265)
204 PF13431 TPR_17: Tetratricopep 96.3 0.0031 6.7E-08 38.2 2.2 32 394-425 2-33 (34)
205 PRK10803 tol-pal system protei 96.3 0.034 7.5E-07 52.3 10.2 92 342-433 146-245 (263)
206 COG4700 Uncharacterized protei 96.3 0.65 1.4E-05 40.2 17.0 100 198-297 86-189 (251)
207 KOG2796 Uncharacterized conser 96.3 0.24 5.3E-06 45.1 14.7 167 138-307 139-323 (366)
208 PF13428 TPR_14: Tetratricopep 96.2 0.0094 2E-07 38.7 4.3 42 372-413 2-43 (44)
209 KOG2796 Uncharacterized conser 96.1 0.4 8.8E-06 43.7 15.1 166 239-405 139-320 (366)
210 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.031 6.6E-07 55.5 8.6 95 339-436 75-176 (453)
211 PF13371 TPR_9: Tetratricopept 96.0 0.026 5.7E-07 41.3 6.4 61 347-407 3-65 (73)
212 PRK10803 tol-pal system protei 96.0 0.17 3.8E-06 47.6 13.2 99 305-406 145-252 (263)
213 PRK10866 outer membrane biogen 96.0 1.4 3E-05 41.1 22.3 66 165-230 31-98 (243)
214 PF09205 DUF1955: Domain of un 95.9 0.73 1.6E-05 37.4 16.5 141 278-437 12-152 (161)
215 KOG1585 Protein required for f 95.8 1.5 3.2E-05 39.8 17.2 85 343-428 154-250 (308)
216 PF12921 ATP13: Mitochondrial 95.7 0.14 2.9E-06 42.1 9.7 96 302-415 1-98 (126)
217 PF03704 BTAD: Bacterial trans 95.4 0.065 1.4E-06 45.6 7.6 67 239-305 65-138 (146)
218 KOG3941 Intermediate in Toll s 95.4 0.14 3E-06 47.1 9.5 109 255-365 53-185 (406)
219 PF13525 YfiO: Outer membrane 95.4 0.73 1.6E-05 41.7 14.7 49 146-194 16-70 (203)
220 PF13424 TPR_12: Tetratricopep 95.4 0.025 5.5E-07 42.1 4.3 58 373-430 7-71 (78)
221 PF13424 TPR_12: Tetratricopep 95.3 0.032 7E-07 41.5 4.6 60 339-398 5-73 (78)
222 COG4235 Cytochrome c biogenesi 95.0 0.39 8.4E-06 45.0 11.6 95 165-261 155-252 (287)
223 KOG1538 Uncharacterized conser 95.0 1.1 2.3E-05 46.3 15.2 82 341-431 749-830 (1081)
224 KOG2041 WD40 repeat protein [G 95.0 5.7 0.00012 41.7 27.3 18 278-295 933-950 (1189)
225 COG3898 Uncharacterized membra 94.9 4.1 8.8E-05 39.7 27.5 26 270-295 190-215 (531)
226 PF13281 DUF4071: Domain of un 94.7 4.2 9.2E-05 40.1 18.4 73 140-212 146-228 (374)
227 KOG3941 Intermediate in Toll s 94.7 0.23 4.9E-06 45.8 8.8 101 152-252 51-174 (406)
228 KOG2053 Mitochondrial inherita 94.4 9 0.0002 41.5 37.5 173 16-196 60-256 (932)
229 KOG0550 Molecular chaperone (D 94.2 2.8 6E-05 41.2 15.4 155 243-403 176-353 (486)
230 COG5107 RNA14 Pre-mRNA 3'-end 94.2 2 4.4E-05 42.5 14.6 143 236-383 397-547 (660)
231 PF04053 Coatomer_WDAD: Coatom 94.2 1.1 2.5E-05 45.6 13.7 152 248-429 273-426 (443)
232 COG1729 Uncharacterized protei 94.2 0.38 8.2E-06 44.5 9.3 91 341-434 144-244 (262)
233 KOG1130 Predicted G-alpha GTPa 94.1 0.24 5.2E-06 48.1 8.1 127 203-329 197-341 (639)
234 KOG0543 FKBP-type peptidyl-pro 94.1 0.43 9.4E-06 46.5 9.9 64 371-434 257-320 (397)
235 KOG4555 TPR repeat-containing 94.1 0.51 1.1E-05 38.2 8.5 89 348-436 52-146 (175)
236 PLN03098 LPA1 LOW PSII ACCUMUL 94.1 0.33 7.1E-06 48.5 9.2 63 300-365 72-138 (453)
237 PF13525 YfiO: Outer membrane 94.0 4.6 0.0001 36.5 20.7 59 172-230 11-71 (203)
238 smart00299 CLH Clathrin heavy 93.5 4 8.6E-05 34.2 15.5 87 101-192 9-95 (140)
239 COG0457 NrfG FOG: TPR repeat [ 93.5 5.6 0.00012 35.8 27.4 195 236-434 59-265 (291)
240 PRK15331 chaperone protein Sic 93.4 2.3 5E-05 36.3 12.0 90 173-264 44-133 (165)
241 PF13512 TPR_18: Tetratricopep 93.4 1.8 4E-05 36.0 11.1 65 350-414 21-91 (142)
242 KOG1920 IkappaB kinase complex 93.2 16 0.00035 41.1 20.6 53 309-365 971-1025(1265)
243 smart00299 CLH Clathrin heavy 93.2 4.5 9.6E-05 33.9 15.9 126 271-416 10-136 (140)
244 PF10300 DUF3808: Protein of u 93.2 5.4 0.00012 41.3 16.9 161 205-366 192-374 (468)
245 PF13170 DUF4003: Protein of u 93.2 6.8 0.00015 37.7 16.3 144 99-244 60-225 (297)
246 PF10300 DUF3808: Protein of u 93.1 3.9 8.5E-05 42.3 15.8 117 69-193 163-294 (468)
247 KOG2066 Vacuolar assembly/sort 93.1 14 0.00031 39.5 22.9 142 33-194 392-533 (846)
248 PF08631 SPO22: Meiosis protei 93.0 8.8 0.00019 36.7 23.3 17 381-397 256-272 (278)
249 COG3629 DnrI DNA-binding trans 92.9 0.53 1.1E-05 44.2 8.2 63 371-433 153-215 (280)
250 PF07079 DUF1347: Protein of u 92.9 11 0.00024 37.7 27.4 46 31-76 126-179 (549)
251 PF00515 TPR_1: Tetratricopept 92.8 0.22 4.9E-06 29.8 3.9 32 372-403 2-33 (34)
252 PF04053 Coatomer_WDAD: Coatom 92.7 5.1 0.00011 40.9 15.7 56 235-296 346-401 (443)
253 COG4105 ComL DNA uptake lipopr 92.7 8.2 0.00018 35.6 15.2 174 136-329 36-230 (254)
254 KOG1941 Acetylcholine receptor 92.6 3.1 6.7E-05 40.1 12.7 45 177-221 17-63 (518)
255 KOG0543 FKBP-type peptidyl-pro 92.6 1.9 4E-05 42.3 11.5 138 275-434 215-355 (397)
256 PRK11906 transcriptional regul 92.5 2.1 4.5E-05 43.0 12.1 62 370-431 337-398 (458)
257 PF04184 ST7: ST7 protein; In 92.3 14 0.00031 37.5 18.6 56 274-329 265-321 (539)
258 KOG2610 Uncharacterized conser 92.3 4.9 0.00011 38.3 13.5 47 249-295 116-164 (491)
259 PF07719 TPR_2: Tetratricopept 92.0 0.45 9.8E-06 28.3 4.6 33 372-404 2-34 (34)
260 COG3629 DnrI DNA-binding trans 91.5 1.5 3.2E-05 41.4 9.3 77 236-312 153-236 (280)
261 PRK11619 lytic murein transgly 91.4 24 0.00052 38.2 27.5 77 137-215 101-177 (644)
262 COG3118 Thioredoxin domain-con 91.1 14 0.0003 34.9 16.5 144 277-422 143-289 (304)
263 COG0457 NrfG FOG: TPR repeat [ 91.1 11 0.00024 33.8 24.7 197 204-403 62-268 (291)
264 PF04184 ST7: ST7 protein; In 91.1 20 0.00042 36.6 17.0 103 303-405 259-380 (539)
265 PF10602 RPN7: 26S proteasome 91.0 6 0.00013 34.8 12.3 91 169-261 39-138 (177)
266 PF07035 Mic1: Colon cancer-as 90.7 10 0.00022 32.8 15.5 137 288-437 14-152 (167)
267 COG5107 RNA14 Pre-mRNA 3'-end 90.6 20 0.00043 35.9 31.3 406 20-434 30-531 (660)
268 KOG4555 TPR repeat-containing 90.2 2.6 5.7E-05 34.2 8.3 85 245-329 52-141 (175)
269 PF13512 TPR_18: Tetratricopep 90.1 10 0.00022 31.7 12.7 76 274-350 16-93 (142)
270 COG1729 Uncharacterized protei 90.0 4.2 9.2E-05 37.8 10.7 85 280-364 153-240 (262)
271 PF04097 Nic96: Nup93/Nic96; 89.6 31 0.00066 37.3 18.6 47 32-79 111-160 (613)
272 PF02259 FAT: FAT domain; Int 89.6 23 0.00049 35.0 19.6 148 266-416 144-303 (352)
273 PF13170 DUF4003: Protein of u 89.1 16 0.00034 35.2 14.4 62 285-347 160-225 (297)
274 COG4105 ComL DNA uptake lipopr 88.6 20 0.00044 33.2 20.4 159 275-434 41-233 (254)
275 PF02284 COX5A: Cytochrome c o 88.3 4 8.6E-05 31.6 7.6 60 286-347 28-87 (108)
276 KOG1941 Acetylcholine receptor 88.0 26 0.00056 34.1 14.4 147 147-293 18-187 (518)
277 PF13176 TPR_7: Tetratricopept 88.0 1.3 2.7E-05 27.0 4.1 25 270-294 1-25 (36)
278 PRK09687 putative lyase; Provi 88.0 25 0.00055 33.5 26.0 181 132-318 34-221 (280)
279 KOG2114 Vacuolar assembly/sort 87.9 21 0.00046 38.6 15.2 179 203-397 336-516 (933)
280 PRK11906 transcriptional regul 87.9 31 0.00067 35.0 15.7 142 47-192 232-398 (458)
281 COG3947 Response regulator con 87.8 24 0.00053 33.2 14.4 61 373-433 281-341 (361)
282 KOG1585 Protein required for f 87.8 22 0.00047 32.6 15.7 202 169-394 34-250 (308)
283 PF13176 TPR_7: Tetratricopept 87.7 0.99 2.1E-05 27.5 3.5 25 374-398 2-26 (36)
284 cd00923 Cyt_c_Oxidase_Va Cytoc 87.4 5.2 0.00011 30.6 7.7 63 283-347 22-84 (103)
285 KOG4570 Uncharacterized conser 87.4 6 0.00013 37.5 9.7 101 129-231 58-165 (418)
286 KOG1586 Protein required for f 87.0 24 0.00052 32.2 13.5 17 245-261 23-39 (288)
287 PF13181 TPR_8: Tetratricopept 86.9 1.3 2.8E-05 26.3 3.8 30 373-402 3-32 (34)
288 KOG2610 Uncharacterized conser 86.5 8.7 0.00019 36.7 10.4 161 280-443 115-285 (491)
289 KOG4234 TPR repeat-containing 86.4 4.2 9.1E-05 35.8 7.7 88 349-436 105-199 (271)
290 PF10602 RPN7: 26S proteasome 86.2 19 0.00041 31.6 12.2 93 271-365 39-139 (177)
291 COG4649 Uncharacterized protei 85.8 15 0.00032 31.8 10.4 23 274-296 173-195 (221)
292 COG4785 NlpI Lipoprotein NlpI, 85.3 28 0.0006 31.4 14.4 179 250-435 79-267 (297)
293 PF13428 TPR_14: Tetratricopep 85.3 4 8.6E-05 26.1 5.7 28 270-297 3-30 (44)
294 PF09613 HrpB1_HrpK: Bacterial 85.2 23 0.0005 30.3 12.6 88 312-402 19-108 (160)
295 PF09205 DUF1955: Domain of un 85.2 20 0.00043 29.5 12.8 60 271-331 89-148 (161)
296 PF09613 HrpB1_HrpK: Bacterial 85.0 4 8.6E-05 34.8 6.9 54 351-406 22-79 (160)
297 KOG4570 Uncharacterized conser 84.6 9.9 0.00021 36.1 9.7 98 230-332 58-164 (418)
298 PF11207 DUF2989: Protein of u 84.6 7 0.00015 34.7 8.4 77 74-155 117-198 (203)
299 PF02259 FAT: FAT domain; Int 84.3 45 0.00097 32.9 17.6 66 369-434 144-213 (352)
300 TIGR02561 HrpB1_HrpK type III 84.0 4.2 9.2E-05 34.0 6.4 51 384-434 23-73 (153)
301 PF07035 Mic1: Colon cancer-as 83.7 28 0.00061 30.1 15.3 133 222-398 15-147 (167)
302 COG3118 Thioredoxin domain-con 83.5 41 0.00089 31.9 18.6 52 211-264 144-195 (304)
303 PF13374 TPR_10: Tetratricopep 83.2 2.7 5.9E-05 26.1 4.2 28 372-399 3-30 (42)
304 KOG0276 Vesicle coat complex C 83.0 20 0.00044 37.3 11.8 148 249-431 599-747 (794)
305 KOG2114 Vacuolar assembly/sort 82.7 79 0.0017 34.6 20.0 115 139-261 338-456 (933)
306 PF13431 TPR_17: Tetratricopep 82.7 2.2 4.7E-05 25.6 3.3 24 233-256 10-33 (34)
307 COG4649 Uncharacterized protei 82.6 23 0.0005 30.6 10.3 121 278-399 68-195 (221)
308 PF08631 SPO22: Meiosis protei 81.6 50 0.0011 31.5 24.0 19 413-431 254-272 (278)
309 PRK12798 chemotaxis protein; R 81.2 62 0.0014 32.4 21.3 184 249-434 125-324 (421)
310 PF00637 Clathrin: Region in C 81.2 1.1 2.4E-05 37.8 2.3 84 105-192 13-96 (143)
311 PF00515 TPR_1: Tetratricopept 80.8 3.7 8E-05 24.3 3.9 27 270-296 3-29 (34)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 80.0 15 0.00033 28.2 7.5 62 182-244 23-84 (103)
313 PRK09687 putative lyase; Provi 79.9 58 0.0012 31.1 28.7 229 156-402 27-265 (280)
314 KOG1550 Extracellular protein 79.3 89 0.0019 33.3 16.2 51 386-437 379-429 (552)
315 PF07721 TPR_4: Tetratricopept 78.5 2.9 6.3E-05 23.2 2.7 23 407-429 3-25 (26)
316 PF13762 MNE1: Mitochondrial s 78.3 12 0.00026 31.4 7.3 77 34-113 40-129 (145)
317 PF13374 TPR_10: Tetratricopep 78.1 5.1 0.00011 24.8 4.2 26 270-295 4-29 (42)
318 TIGR02561 HrpB1_HrpK type III 78.1 41 0.00088 28.4 11.8 46 214-261 23-69 (153)
319 KOG4648 Uncharacterized conser 78.0 4.2 9.1E-05 38.9 5.0 107 311-424 105-214 (536)
320 PF02284 COX5A: Cytochrome c o 77.9 19 0.00041 28.0 7.5 60 184-244 28-87 (108)
321 TIGR02508 type_III_yscG type I 77.2 32 0.00069 26.7 8.8 86 116-205 21-106 (115)
322 PF11207 DUF2989: Protein of u 77.0 23 0.0005 31.5 9.0 73 183-256 123-198 (203)
323 TIGR02508 type_III_yscG type I 75.9 30 0.00065 26.8 8.0 85 15-103 21-106 (115)
324 PF13762 MNE1: Mitochondrial s 75.7 46 0.001 28.0 10.0 77 138-214 42-128 (145)
325 COG4455 ImpE Protein of avirul 75.4 9.6 0.00021 34.2 6.2 64 342-405 4-69 (273)
326 PF00637 Clathrin: Region in C 75.2 1 2.3E-05 38.0 0.3 53 209-261 15-67 (143)
327 PF13174 TPR_6: Tetratricopept 74.3 6.1 0.00013 22.9 3.6 27 377-403 6-32 (33)
328 smart00028 TPR Tetratricopepti 72.8 6.8 0.00015 21.8 3.6 29 374-402 4-32 (34)
329 PF14853 Fis1_TPR_C: Fis1 C-te 72.3 6.1 0.00013 26.6 3.4 31 376-406 6-36 (53)
330 PF06552 TOM20_plant: Plant sp 71.9 47 0.001 29.0 9.4 44 387-437 96-139 (186)
331 PF04190 DUF410: Protein of un 71.4 92 0.002 29.4 16.3 159 248-434 2-170 (260)
332 PF07719 TPR_2: Tetratricopept 71.4 7 0.00015 22.9 3.3 29 406-434 2-30 (34)
333 COG2909 MalT ATP-dependent tra 70.2 1.8E+02 0.0039 32.2 19.7 255 173-444 367-657 (894)
334 KOG1258 mRNA processing protei 69.3 1.5E+02 0.0033 31.1 31.9 382 32-422 44-492 (577)
335 PRK15180 Vi polysaccharide bio 68.1 30 0.00066 34.9 8.4 123 278-404 299-424 (831)
336 PF04097 Nic96: Nup93/Nic96; 68.1 1.8E+02 0.004 31.5 16.2 67 135-202 112-188 (613)
337 KOG4648 Uncharacterized conser 67.5 4.3 9.2E-05 38.8 2.5 86 347-432 105-192 (536)
338 PF13181 TPR_8: Tetratricopept 66.8 12 0.00025 21.9 3.6 28 406-433 2-29 (34)
339 KOG0276 Vesicle coat complex C 66.5 58 0.0012 34.1 10.2 98 147-261 649-746 (794)
340 PHA02875 ankyrin repeat protei 66.3 1.6E+02 0.0034 30.0 16.0 149 141-303 71-230 (413)
341 PRK10941 hypothetical protein; 66.1 33 0.00071 32.5 8.1 62 373-434 183-244 (269)
342 KOG4077 Cytochrome c oxidase, 65.8 37 0.00081 27.6 7.0 70 286-366 67-136 (149)
343 COG4455 ImpE Protein of avirul 65.4 33 0.00072 30.9 7.3 52 208-260 8-59 (273)
344 TIGR03504 FimV_Cterm FimV C-te 65.3 10 0.00022 24.4 3.2 26 410-435 4-29 (44)
345 KOG1586 Protein required for f 65.2 1.1E+02 0.0025 28.0 16.0 56 350-405 165-229 (288)
346 KOG1464 COP9 signalosome, subu 64.5 1.3E+02 0.0027 28.3 19.3 259 130-396 21-328 (440)
347 PHA02875 ankyrin repeat protei 64.2 1.1E+02 0.0024 31.1 12.4 194 125-338 20-229 (413)
348 PF04910 Tcf25: Transcriptiona 63.8 1.6E+02 0.0035 29.3 13.7 64 370-433 99-167 (360)
349 COG3947 Response regulator con 63.4 1.4E+02 0.003 28.4 14.7 67 274-341 285-355 (361)
350 COG1747 Uncharacterized N-term 61.9 2E+02 0.0044 29.8 23.2 177 233-416 63-250 (711)
351 PF07163 Pex26: Pex26 protein; 60.7 1.1E+02 0.0023 29.0 9.9 17 173-189 90-106 (309)
352 PF14853 Fis1_TPR_C: Fis1 C-te 60.4 50 0.0011 22.3 6.3 27 408-434 4-30 (53)
353 smart00386 HAT HAT (Half-A-TPR 60.4 18 0.00039 20.6 3.6 29 385-413 1-29 (33)
354 KOG4279 Serine/threonine prote 59.2 1.2E+02 0.0026 32.8 11.1 180 222-405 184-400 (1226)
355 PF07163 Pex26: Pex26 protein; 58.6 1.2E+02 0.0026 28.7 9.9 86 275-363 90-182 (309)
356 KOG1550 Extracellular protein 58.5 2.6E+02 0.0056 29.9 21.0 173 151-329 228-423 (552)
357 TIGR03504 FimV_Cterm FimV C-te 58.2 25 0.00055 22.6 4.1 22 275-296 6-27 (44)
358 smart00638 LPD_N Lipoprotein N 56.2 2.8E+02 0.0061 29.7 23.7 60 134-195 309-369 (574)
359 PF06957 COPI_C: Coatomer (COP 55.6 52 0.0011 33.3 7.8 57 362-432 289-347 (422)
360 KOG1308 Hsp70-interacting prot 55.6 8.9 0.00019 36.8 2.4 89 351-439 126-216 (377)
361 PF11838 ERAP1_C: ERAP1-like C 55.0 2.1E+02 0.0045 27.8 17.6 27 150-176 55-83 (324)
362 PRK10564 maltose regulon perip 54.5 22 0.00049 33.7 4.8 41 168-208 259-299 (303)
363 PF09670 Cas_Cas02710: CRISPR- 54.4 2.4E+02 0.0052 28.3 12.5 52 278-330 141-196 (379)
364 COG1747 Uncharacterized N-term 53.7 2.8E+02 0.006 28.8 20.8 158 165-329 65-231 (711)
365 PF14561 TPR_20: Tetratricopep 53.4 46 0.001 25.3 5.6 44 392-435 9-52 (90)
366 PF10345 Cohesin_load: Cohesin 53.1 3.3E+02 0.0071 29.5 24.6 48 382-429 372-428 (608)
367 PRK13800 putative oxidoreducta 53.1 4E+02 0.0087 30.5 26.5 256 155-433 624-880 (897)
368 KOG1498 26S proteasome regulat 53.0 2.5E+02 0.0053 28.0 16.8 186 232-447 48-254 (439)
369 PF10366 Vps39_1: Vacuolar sor 52.8 1E+02 0.0022 24.5 7.6 40 251-296 28-67 (108)
370 KOG4642 Chaperone-dependent E3 52.8 50 0.0011 30.3 6.4 84 313-399 20-106 (284)
371 PF10579 Rapsyn_N: Rapsyn N-te 52.7 48 0.001 24.5 5.2 45 281-325 19-65 (80)
372 KOG4234 TPR repeat-containing 52.2 1.8E+02 0.0038 26.1 9.5 60 346-405 141-202 (271)
373 PRK15180 Vi polysaccharide bio 51.7 1.9E+02 0.0042 29.5 10.7 128 314-445 300-429 (831)
374 cd08819 CARD_MDA5_2 Caspase ac 51.6 1E+02 0.0023 23.3 7.1 66 220-288 21-86 (88)
375 PF11846 DUF3366: Domain of un 50.8 57 0.0012 29.0 6.8 35 368-402 141-175 (193)
376 PF10579 Rapsyn_N: Rapsyn N-te 50.6 34 0.00074 25.2 4.1 47 315-361 18-65 (80)
377 KOG4567 GTPase-activating prot 49.4 2.2E+02 0.0047 27.4 10.1 73 288-366 263-345 (370)
378 PF11846 DUF3366: Domain of un 48.5 71 0.0015 28.4 7.0 51 315-365 120-170 (193)
379 KOG0292 Vesicle coat complex C 48.4 24 0.00052 38.4 4.3 76 309-400 626-701 (1202)
380 KOG4077 Cytochrome c oxidase, 48.3 1.3E+02 0.0028 24.6 7.3 59 184-243 67-125 (149)
381 PF11838 ERAP1_C: ERAP1-like C 48.0 2.7E+02 0.0058 27.0 17.3 83 319-401 146-231 (324)
382 PF13934 ELYS: Nuclear pore co 47.2 2.2E+02 0.0047 26.2 10.1 120 246-374 88-207 (226)
383 KOG2063 Vacuolar assembly/sort 46.8 4.7E+02 0.01 29.5 21.2 27 168-194 506-532 (877)
384 PRK10564 maltose regulon perip 46.4 41 0.00089 32.0 5.1 45 266-310 254-299 (303)
385 KOG4507 Uncharacterized conser 46.4 64 0.0014 33.7 6.7 111 153-264 591-704 (886)
386 PF11848 DUF3368: Domain of un 46.1 83 0.0018 20.6 5.3 34 278-311 12-45 (48)
387 PF10345 Cohesin_load: Cohesin 45.9 4.2E+02 0.0091 28.7 29.7 192 61-261 27-250 (608)
388 PF08311 Mad3_BUB1_I: Mad3/BUB 45.6 1.4E+02 0.003 24.5 7.6 43 388-430 80-124 (126)
389 KOG2066 Vacuolar assembly/sort 45.5 4.5E+02 0.0098 28.9 25.6 127 134-268 391-536 (846)
390 KOG0991 Replication factor C, 45.4 2.5E+02 0.0054 25.9 11.6 148 140-313 135-282 (333)
391 PF09477 Type_III_YscG: Bacter 45.0 1.6E+02 0.0034 23.4 9.1 79 115-196 21-99 (116)
392 PF10366 Vps39_1: Vacuolar sor 44.9 1E+02 0.0022 24.5 6.5 40 150-194 28-67 (108)
393 COG2976 Uncharacterized protei 44.8 2.3E+02 0.005 25.3 13.6 113 286-403 70-191 (207)
394 PF11663 Toxin_YhaV: Toxin wit 44.8 25 0.00055 28.9 3.0 32 178-211 107-138 (140)
395 cd08819 CARD_MDA5_2 Caspase ac 44.8 1.4E+02 0.0029 22.7 6.9 66 119-186 21-86 (88)
396 KOG1464 COP9 signalosome, subu 44.7 2.7E+02 0.0059 26.2 16.8 182 250-432 41-259 (440)
397 COG5159 RPN6 26S proteasome re 44.2 2.9E+02 0.0063 26.3 10.4 136 172-307 9-168 (421)
398 PRK13800 putative oxidoreducta 43.5 5.6E+02 0.012 29.4 26.8 132 233-372 753-885 (897)
399 PRK11619 lytic murein transgly 42.8 4.8E+02 0.01 28.5 37.4 93 347-439 415-510 (644)
400 KOG3364 Membrane protein invol 42.3 2E+02 0.0044 23.9 9.1 48 386-433 50-99 (149)
401 PF11525 CopK: Copper resistan 42.2 9 0.0002 27.0 0.1 22 551-572 8-29 (73)
402 PF09477 Type_III_YscG: Bacter 41.9 1.8E+02 0.0038 23.1 10.2 81 214-298 19-99 (116)
403 PF11663 Toxin_YhaV: Toxin wit 41.7 39 0.00084 27.8 3.6 35 70-109 104-138 (140)
404 KOG0376 Serine-threonine phosp 40.9 43 0.00092 34.0 4.6 86 347-432 12-99 (476)
405 PF10255 Paf67: RNA polymerase 40.7 1.7E+02 0.0038 29.5 8.8 57 238-295 124-191 (404)
406 PF09986 DUF2225: Uncharacteri 40.6 2.2E+02 0.0047 25.9 8.9 48 388-435 142-195 (214)
407 KOG3636 Uncharacterized conser 40.1 3.8E+02 0.0082 27.2 10.6 141 35-177 94-271 (669)
408 PF11768 DUF3312: Protein of u 40.0 3.6E+02 0.0078 28.3 10.9 25 239-264 411-435 (545)
409 PF04190 DUF410: Protein of un 39.9 3.3E+02 0.0071 25.7 20.3 158 147-332 2-170 (260)
410 KOG0545 Aryl-hydrocarbon recep 39.6 1.7E+02 0.0038 27.1 7.7 56 379-434 238-293 (329)
411 PF14689 SPOB_a: Sensor_kinase 38.9 50 0.0011 23.1 3.5 26 271-296 26-51 (62)
412 PRK10941 hypothetical protein; 38.8 1.5E+02 0.0032 28.2 7.7 66 342-407 184-251 (269)
413 PF12968 DUF3856: Domain of Un 38.2 1.9E+02 0.004 23.5 6.8 60 371-430 55-125 (144)
414 PF11848 DUF3368: Domain of un 38.2 1.1E+02 0.0025 19.9 5.1 31 178-208 14-44 (48)
415 COG5108 RPO41 Mitochondrial DN 38.1 1.7E+02 0.0037 31.3 8.3 72 273-348 33-112 (1117)
416 cd08326 CARD_CASP9 Caspase act 37.9 1.3E+02 0.0029 22.6 5.8 61 121-185 20-80 (84)
417 KOG4507 Uncharacterized conser 37.4 1.8E+02 0.0038 30.7 8.2 131 299-434 567-705 (886)
418 PF11768 DUF3312: Protein of u 37.2 4.6E+02 0.0099 27.6 11.2 25 169-193 411-435 (545)
419 PF14863 Alkyl_sulf_dimr: Alky 37.1 1.6E+02 0.0034 24.7 6.8 62 355-419 57-118 (141)
420 cd08326 CARD_CASP9 Caspase act 36.4 1.8E+02 0.004 21.8 6.4 61 222-287 20-80 (84)
421 PF10475 DUF2450: Protein of u 35.7 4.1E+02 0.0088 25.5 12.8 54 139-194 102-155 (291)
422 KOG0403 Neoplastic transformat 35.5 5E+02 0.011 26.5 19.2 306 68-401 218-573 (645)
423 KOG0376 Serine-threonine phosp 35.2 27 0.00059 35.3 2.3 95 310-407 11-108 (476)
424 KOG0686 COP9 signalosome, subu 35.1 4.8E+02 0.011 26.3 13.3 58 137-194 152-215 (466)
425 PF14689 SPOB_a: Sensor_kinase 34.2 56 0.0012 22.8 3.2 30 165-194 22-51 (62)
426 TIGR02270 conserved hypothetic 34.0 5.2E+02 0.011 26.3 25.5 122 233-366 158-279 (410)
427 PF02847 MA3: MA3 domain; Int 33.2 1.1E+02 0.0023 24.3 5.2 21 172-192 8-28 (113)
428 PF13929 mRNA_stabil: mRNA sta 33.1 4.4E+02 0.0096 25.2 22.4 121 169-292 134-262 (292)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 32.2 2.8E+02 0.0061 22.6 8.8 43 219-261 81-124 (126)
430 TIGR01503 MthylAspMut_E methyl 32.1 5.8E+02 0.013 26.2 11.2 122 423-565 152-292 (480)
431 COG5108 RPO41 Mitochondrial DN 31.6 2.4E+02 0.0053 30.2 8.2 47 104-151 33-81 (1117)
432 KOG1258 mRNA processing protei 31.4 6.6E+02 0.014 26.7 25.7 184 165-354 296-490 (577)
433 PRK12356 glutaminase; Reviewed 31.4 3.8E+02 0.0082 26.1 9.1 84 176-261 164-256 (319)
434 cd00280 TRFH Telomeric Repeat 30.5 3.3E+02 0.0072 24.1 7.6 30 242-271 117-146 (200)
435 cd00280 TRFH Telomeric Repeat 30.3 2.8E+02 0.006 24.5 7.2 30 346-375 118-147 (200)
436 smart00638 LPD_N Lipoprotein N 30.0 7.1E+02 0.015 26.6 23.2 99 32-136 309-412 (574)
437 COG0735 Fur Fe2+/Zn2+ uptake r 29.9 3.1E+02 0.0066 23.1 7.5 36 293-329 11-46 (145)
438 PRK09169 hypothetical protein; 29.7 1.3E+03 0.028 29.5 38.4 399 32-431 203-692 (2316)
439 PRK11639 zinc uptake transcrip 29.6 2.3E+02 0.0051 24.6 7.0 61 294-356 17-77 (169)
440 PF14669 Asp_Glu_race_2: Putat 29.6 4.1E+02 0.0089 23.7 16.3 57 205-261 136-206 (233)
441 COG4976 Predicted methyltransf 29.0 1E+02 0.0022 28.2 4.6 55 350-404 6-62 (287)
442 PF13929 mRNA_stabil: mRNA sta 29.0 5.2E+02 0.011 24.7 19.0 64 300-363 199-262 (292)
443 PF12926 MOZART2: Mitotic-spin 28.5 2.6E+02 0.0057 21.1 7.6 63 97-162 8-70 (88)
444 PF10255 Paf67: RNA polymerase 28.3 3.9E+02 0.0085 27.1 9.0 55 139-193 126-191 (404)
445 PF11817 Foie-gras_1: Foie gra 28.1 4.9E+02 0.011 24.2 9.5 52 275-326 185-241 (247)
446 COG4785 NlpI Lipoprotein NlpI, 27.9 4.7E+02 0.01 23.9 16.9 60 135-194 99-161 (297)
447 PF06552 TOM20_plant: Plant sp 27.9 4.3E+02 0.0092 23.3 10.1 15 367-381 109-123 (186)
448 PF12926 MOZART2: Mitotic-spin 27.8 2.7E+02 0.0059 21.0 6.3 43 289-331 29-71 (88)
449 PF12796 Ank_2: Ankyrin repeat 27.5 2.1E+02 0.0045 21.1 5.7 13 147-159 6-18 (89)
450 KOG3807 Predicted membrane pro 27.4 5E+02 0.011 25.3 8.9 61 344-404 280-345 (556)
451 COG2976 Uncharacterized protei 27.3 4.6E+02 0.0099 23.5 14.8 88 210-298 98-189 (207)
452 KOG2396 HAT (Half-A-TPR) repea 27.3 7.3E+02 0.016 25.9 23.1 16 319-334 512-527 (568)
453 PF07575 Nucleopor_Nup85: Nup8 27.3 2.3E+02 0.0049 30.4 7.8 27 33-60 149-175 (566)
454 cd08332 CARD_CASP2 Caspase act 27.3 2.3E+02 0.0051 21.5 5.8 57 121-181 24-80 (90)
455 PF07720 TPR_3: Tetratricopept 26.8 1.6E+02 0.0034 17.9 4.5 18 376-393 6-23 (36)
456 PF08967 DUF1884: Domain of un 26.6 77 0.0017 23.4 2.8 28 463-490 6-33 (85)
457 KOG3807 Predicted membrane pro 26.5 6.1E+02 0.013 24.7 12.8 18 389-406 380-397 (556)
458 KOG0890 Protein kinase of the 26.1 1.5E+03 0.032 29.0 25.5 64 371-436 1670-1733(2382)
459 cd07153 Fur_like Ferric uptake 25.9 1.7E+02 0.0037 23.2 5.2 46 274-319 6-51 (116)
460 PF11123 DNA_Packaging_2: DNA 25.6 2.2E+02 0.0048 20.7 4.7 33 115-148 12-44 (82)
461 smart00777 Mad3_BUB1_I Mad3/BU 25.4 1.4E+02 0.003 24.5 4.5 40 18-57 82-123 (125)
462 PF09670 Cas_Cas02710: CRISPR- 25.0 7.1E+02 0.015 25.0 12.2 55 175-230 140-198 (379)
463 KOG2297 Predicted translation 24.7 6.4E+02 0.014 24.4 16.2 71 135-215 165-237 (412)
464 PRK13342 recombination factor 24.6 7.5E+02 0.016 25.1 14.9 163 80-261 156-330 (413)
465 COG5191 Uncharacterized conser 24.4 1.5E+02 0.0032 28.5 4.9 78 336-413 104-184 (435)
466 KOG0686 COP9 signalosome, subu 24.2 7.5E+02 0.016 25.0 14.9 62 167-228 151-214 (466)
467 PF01475 FUR: Ferric uptake re 24.2 1.5E+02 0.0032 23.9 4.5 46 273-318 12-57 (120)
468 PF07575 Nucleopor_Nup85: Nup8 23.6 3.4E+02 0.0074 29.1 8.3 93 165-261 371-463 (566)
469 COG4976 Predicted methyltransf 23.1 1.4E+02 0.003 27.4 4.3 56 381-436 5-60 (287)
470 COG0735 Fur Fe2+/Zn2+ uptake r 23.0 4.6E+02 0.0099 22.1 7.6 33 218-250 37-69 (145)
471 PF14561 TPR_20: Tetratricopep 22.9 3.4E+02 0.0075 20.6 8.0 62 370-431 21-85 (90)
472 PF04090 RNA_pol_I_TF: RNA pol 22.9 4.2E+02 0.0091 23.8 7.3 59 373-431 43-102 (199)
473 COG5159 RPN6 26S proteasome re 22.7 6.8E+02 0.015 23.9 12.7 48 276-323 11-65 (421)
474 KOG0551 Hsp90 co-chaperone CNS 22.6 4.9E+02 0.011 25.5 7.9 83 346-428 88-176 (390)
475 PRK14962 DNA polymerase III su 22.5 8.9E+02 0.019 25.2 13.8 31 128-160 191-221 (472)
476 PF02607 B12-binding_2: B12 bi 22.4 1.9E+02 0.0041 21.0 4.5 47 271-317 1-50 (79)
477 COG0790 FOG: TPR repeat, SEL1 20.8 7.2E+02 0.016 23.5 18.4 185 215-404 55-270 (292)
478 KOG4642 Chaperone-dependent E3 20.6 7E+02 0.015 23.3 9.4 117 246-364 20-142 (284)
479 PLN03192 Voltage-dependent pot 20.4 8.6E+02 0.019 27.6 11.0 14 350-363 630-643 (823)
480 PRK11639 zinc uptake transcrip 20.4 4.6E+02 0.01 22.7 7.1 13 219-231 43-55 (169)
481 KOG2223 Uncharacterized conser 20.2 8.7E+02 0.019 24.7 9.3 60 325-385 461-520 (586)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-113 Score=928.74 Aligned_cols=563 Identities=32% Similarity=0.581 Sum_probs=553.3
Q ss_pred cCCCCCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHH
Q 008183 7 QQPQPQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLN 82 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~ 82 (575)
..+...+....++++|..+.+.|+ ||+.+||.|+++|+++|++++|+++|++|++||+++||++|.+|++.|+ |++
T Consensus 131 ~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~ 210 (697)
T PLN03081 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHH
Confidence 344556778889999999999999 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 008183 83 IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162 (575)
Q Consensus 83 ~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 162 (575)
+|++|.+.| ..||..||+.++.+|++.+ ..+.++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+
T Consensus 211 lf~~M~~~g---~~p~~~t~~~ll~a~~~~~-~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 211 LFREMWEDG---SDAEPRTFVVMLRASAGLG-SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHHhC---CCCChhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 999999999 9999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 008183 163 ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL 242 (575)
Q Consensus 163 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 242 (575)
++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|++||..++|+|
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008183 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 322 (575)
|++|+++|++++|.++|++ |.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|
T Consensus 367 i~~y~k~G~~~~A~~vf~~-m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDR-MPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHCCCHHHHHHHHHh-CCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999999999 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.++|+.|..++|+.|+..+|++++++|++.|++++|.+++++|++.|+..+|++|+.+|..+|+++.|..+++++.+.+|
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 99999998788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcC
Q 008183 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLG 482 (575)
Q Consensus 403 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 482 (575)
.+..+|+.|+++|++.|+|++|.+++++|+++|+++.|++||+++++.+|.|++++..||+.+++++.+.++..+|++.|
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCccccccChHHhhhhHHHHHHHHHHHHhhhcCCCCCCcEEEEccccccCCcchhhHhhhhhcCceEEeecCCccC
Q 008183 483 YVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRYH 562 (575)
Q Consensus 483 ~~p~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~h 562 (575)
|.||+..+++++++++++..+.+|||+||++|||+ .+|++.+|+|+||+|+|||||+|+|+||++.+|+|||||.+|||
T Consensus 606 y~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~-~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh 684 (697)
T PLN03081 606 YVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI-NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFH 684 (697)
T ss_pred CCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc-cCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccc
Confidence 99999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCccccCCCCC
Q 008183 563 RFLNGSCTCGDLW 575 (575)
Q Consensus 563 ~~~~g~~~c~~~~ 575 (575)
||++|+|||+|||
T Consensus 685 ~f~~g~csc~d~w 697 (697)
T PLN03081 685 HFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCcccccccC
Confidence 9999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-107 Score=902.96 Aligned_cols=559 Identities=31% Similarity=0.584 Sum_probs=546.2
Q ss_pred ccCCCCCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HH
Q 008183 6 NQQPQPQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SL 81 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~ 81 (575)
+..+...+..+.|+++|..+.+.|+ ||..+||+||.+|+++|++++|.++|++|++||+++||+||.+|++.|+ |+
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 3445567788999999999999999 9999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhc
Q 008183 82 NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161 (575)
Q Consensus 82 ~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 161 (575)
++|++|.+.| +.||..||++++.+|++.| +++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|++|
T Consensus 375 ~lf~~M~~~g---~~Pd~~t~~~ll~a~~~~g-~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 375 ETYALMEQDN---VSPDEITIASVLSACACLG-DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHhC---CCCCceeHHHHHHHHhccc-hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999999 9999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHH
Q 008183 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241 (575)
Q Consensus 162 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 241 (575)
.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+.|+.+|..++|+
T Consensus 451 ~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 999999999999999999999999999999986 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 321 (575)
||++|+++|++++|.++|+. + .+|+.+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++
T Consensus 530 Li~~y~k~G~~~~A~~~f~~-~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNS-H-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHh-c-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 99999999999999999999 6 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 322 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
|.++|+.|..++|+.|+..+|++++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++.+++
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 99999999768999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHc
Q 008183 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERL 481 (575)
Q Consensus 402 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~ 481 (575)
|.+...|..|.++|+..|+|++|.++++.|+++|++|+|++||+++++++|.|.+++.+||+.++++..++++..+|++.
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 767 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS 767 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCccccccChHHhhhhHHHHHHHHHHHHhhhcCCCCCCcEEEEccccccCCcchhhHhhhhhcCceEEeecCCcc
Q 008183 482 GYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHESFKYISRVVEREIVVRDVNRY 561 (575)
Q Consensus 482 g~~p~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~d~~~~ 561 (575)
||.||+..++ +.++++|+..+++|||+||++|||+ .+|+++||+|+||+|+|||||+|+|+||++.+|+|||||.+||
T Consensus 768 g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~-~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rf 845 (857)
T PLN03077 768 GLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLI-NTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQF 845 (857)
T ss_pred CcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhh-cCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcc
Confidence 9999998877 5577889999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CcccCccccCCC
Q 008183 562 HRFLNGSCTCGD 573 (575)
Q Consensus 562 h~~~~g~~~c~~ 573 (575)
|||++|+|||+|
T Consensus 846 h~f~~g~csc~d 857 (857)
T PLN03077 846 HHFKDGECSCGD 857 (857)
T ss_pred eeCCCCcccCCC
Confidence 999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.4e-74 Score=632.92 Aligned_cols=542 Identities=19% Similarity=0.289 Sum_probs=474.4
Q ss_pred CCCCCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHHH
Q 008183 8 QPQPQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNI 83 (575)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~~ 83 (575)
.+...+....|.++|..+.+.|+ +++.++|+||.+|+++|+++.|+++|++|++||+++||++|.+|++.|+ |+++
T Consensus 95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~ 174 (857)
T PLN03077 95 LCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174 (857)
T ss_pred HHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHH
Confidence 34456678889999999999999 9999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC
Q 008183 84 FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163 (575)
Q Consensus 84 ~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 163 (575)
|++|...| +.||.+||+++|++|+..+ ++..+.++|..+.+.|+.||+.++|+||++|+++|++++|.++|++|++
T Consensus 175 f~~M~~~g---~~Pd~~t~~~ll~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~ 250 (857)
T PLN03077 175 YHRMLWAG---VRPDVYTFPCVLRTCGGIP-DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250 (857)
T ss_pred HHHHHHcC---CCCChhHHHHHHHHhCCcc-chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 99999999 9999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 164 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
||+++||+||.+|++.|++++|+++|.+|...|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+||
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008183 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323 (575)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 323 (575)
++|+++|++++|.++|++ |..||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 331 ~~y~k~g~~~~A~~vf~~-m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSR-METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409 (857)
T ss_pred HHHHhcCCHHHHHHHHhh-CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHH
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 324 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
++++.+ .+.|+.|+..+|++||++|+++|++++|.++|++|+ +||..+|+++|.+|.+.|+.++|..+|++|.+.-++
T Consensus 410 ~l~~~~-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~p 487 (857)
T PLN03077 410 KLHELA-ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487 (857)
T ss_pred HHHHHH-HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC
Confidence 999999 677999999999999999999999999999999997 789999999999999999999999999999864455
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccC-----------------------------CceeEEEECCEEEEE
Q 008183 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE-----------------------------GGRSWIEVKGKVHVF 454 (575)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----------------------------~~~s~~~~~~~~~~~ 454 (575)
|..+|..++.+|++.|.++.+.+++..|.+.|+.++ ..++|+ .+
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n-------~l 560 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN-------IL 560 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH-------HH
Confidence 656666555444444444444444444444333322 224565 35
Q ss_pred EeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCCccccccChHHhhhhH---HHHHHHHHHHHhhhcCCCCCCcEEEEcc
Q 008183 455 LAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREAL---WYHSEKLALAFGLVSGAPRGKTLRIVKN 531 (575)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~---~~h~~~l~~~~~~~~~~~~~~~~~~~~~ 531 (575)
+.++..++..+++. +++++|++.|+.||..++...+..+.+.+.+ ....+.+...+|+. |...... ++++.
T Consensus 561 I~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~-P~~~~y~-~lv~~ 634 (857)
T PLN03077 561 LTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT-PNLKHYA-CVVDL 634 (857)
T ss_pred HHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC-CchHHHH-HHHHH
Confidence 67777788877766 6788999999999998876555544433322 22334555567876 6554544 67999
Q ss_pred ccccCCcchhhHhhhhhcCc------eEEeecCCccCcccCccc
Q 008183 532 LRICRDCHESFKYISRVVER------EIVVRDVNRYHRFLNGSC 569 (575)
Q Consensus 532 ~~~~~~~~~a~~~~~~~~~~------~~~~~d~~~~h~~~~g~~ 569 (575)
|.++|+.++|.++|.+|+.+ ..++..|+.+.+.+.|+.
T Consensus 635 l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999743 345566766666666654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-63 Score=540.06 Aligned_cols=507 Identities=15% Similarity=0.191 Sum_probs=396.9
Q ss_pred CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChh-----hHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhH
Q 008183 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIV-----SWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTL 102 (575)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-----~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~ 102 (575)
++...|..++..++++|++++|+++|++|+.++.. .++.++.+|.+.|. |+++|+.|. .||..||
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd~~Ty 440 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------NPTLSTF 440 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCCHHHH
Confidence 77788888888888889999999999888755444 45566677887777 888887774 3888899
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC----CCCcchHHHHHHHHHh
Q 008183 103 ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR----ERDVVCYGAMIVGFAQ 178 (575)
Q Consensus 103 ~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~ 178 (575)
+.+|.+|++.| +++.|.++|+.|.+.|+.||..+|++||++|+++|++++|.++|++|. .||.++||+||.+|++
T Consensus 441 n~LL~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 441 NMLMSVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999998888 888999999999888888899999999999999999999999998887 4788899999999999
Q ss_pred CCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHccCCHHHHH
Q 008183 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV--SGLDRNVIVGTGLIDGYGKAGIVSDAR 256 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 256 (575)
.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998888889999999999999999999999999988876 578888889999999999999999999
Q ss_pred HHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008183 257 RVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY 333 (575)
Q Consensus 257 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 333 (575)
++|+.|.. .|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.| .+.
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM-~k~ 678 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-RKQ 678 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHc
Confidence 99888333 56778899999999999999999999999988888899999999999999999999999999888 566
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchhHH
Q 008183 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAM---PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYV 409 (575)
Q Consensus 334 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~ 409 (575)
|+.||..+|++||.+|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.+++++|.+.+ .+|..+|.
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 88889889999999999999999999888888 578888899999999999999999999999888766 45777888
Q ss_pred HHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEE-------------CCEEEEEEeCCCCCcc-hHHHHHHHHHHH
Q 008183 410 IVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV-------------KGKVHVFLAGDRMHER-TEDIYTKLAELM 475 (575)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~l~~l~ 475 (575)
.|+.+|.+.|++++|.+++++|.+.|+.|+..+....+ ...+..|-.+ ++. ...-......++
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHH
Confidence 88899999999999999999998888887753221100 0000001000 000 001113455789
Q ss_pred HHHHHcCCccCCCccccccChHHhhhhHHHHHHHHHHHHhhhcCCCCCCc--EEEEccccccCC-cchhhHhhhhhcCce
Q 008183 476 EECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKT--LRIVKNLRICRD-CHESFKYISRVVERE 552 (575)
Q Consensus 476 ~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~a~~~~~~~~~~~ 552 (575)
++|.+.|+.||..++...+....+.+.. .....+-..+++. +.+++.. .++++.+ |. -++|..++.+|..+.
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGIS-ADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccC-CCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcC
Confidence 9999999999987765544222222222 2334455556665 4444322 2335544 33 358999999998875
Q ss_pred EE
Q 008183 553 IV 554 (575)
Q Consensus 553 ~~ 554 (575)
|+
T Consensus 911 i~ 912 (1060)
T PLN03218 911 VV 912 (1060)
T ss_pred CC
Confidence 54
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.4e-63 Score=534.09 Aligned_cols=487 Identities=18% Similarity=0.270 Sum_probs=426.4
Q ss_pred CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhH
Q 008183 61 SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC 137 (575)
Q Consensus 61 ~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 137 (575)
.++..+|+++|.++.+.|+ |+++|+.|...+ +..||..||+.++.+|++.+ +++.+.++|..|.+.|+.||+.+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~--~~~~~~~t~~~ll~a~~~~~-~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGC--PFTLPASTYDALVEACIALK-SIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCcchHH
Confidence 4577799999999999998 999999998754 16899999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 217 (575)
||.|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.+..
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
+.+.+++..+.+.|+.+|..++|+||++|+++|++++|.++|++ |+++|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~-m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG-MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHH
Q 008183 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL 377 (575)
Q Consensus 298 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 377 (575)
|+.||..||++++.+|++.|++++|.+++..| .+.|+.||..+|++||++|+++|++++|.++|++|. +||..+||+|
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m-~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~l 397 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL-IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNAL 397 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHH-HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHH
Confidence 99999999999999999999999999999999 677999999999999999999999999999999997 7999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhCCCchHHHHHHHHHhh-CCCccCCceeEEEECCEEEEEE
Q 008183 378 LSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD-RRVRKEGGRSWIEVKGKVHVFL 455 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~ 455 (575)
|.+|+++|+.++|.++|++|.+.+ .+|..+|+.++.+|.+.|++++|.++|+.|.+ .|+.|+..... .++
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~--------~li 469 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA--------CMI 469 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH--------hHH
Confidence 999999999999999999999877 55788999999999999999999999999975 68887654322 345
Q ss_pred eCCCCCcchHHHHHHHHHHHHHHHHcCCccCCCccccccChHHhhhhHHHHHHHHHHHHhhhcCCCCCCcEEEEcccccc
Q 008183 456 AGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRIC 535 (575)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (575)
..+...++.+++.+. +++.++.||..++..-+..+...+.+..-.+.....+++. +...++.+.+++.|.++
T Consensus 470 ~~l~r~G~~~eA~~~-------~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 470 ELLGREGLLDEAYAM-------IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHHHhcCCHHHHHHH-------HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhC
Confidence 666778888877643 3456889997664433333322222111011111223444 44455566678999999
Q ss_pred CCcchhhHhhhhhcCceEEeec-------CCccCcccCccc
Q 008183 536 RDCHESFKYISRVVEREIVVRD-------VNRYHRFLNGSC 569 (575)
Q Consensus 536 ~~~~~a~~~~~~~~~~~~~~~d-------~~~~h~~~~g~~ 569 (575)
|+.++|.+++..|..+.+-..+ .+..|.|-.|-.
T Consensus 542 G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 9999999999999988653222 234567765543
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.9e-61 Score=521.00 Aligned_cols=429 Identities=15% Similarity=0.153 Sum_probs=398.6
Q ss_pred ccCCCCCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhHcCCChHHHHHHHccCC----CCChhhHHHHHHHHhcCch-
Q 008183 6 NQQPQPQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIP----SPNIVSWTALISAHSNSPL- 79 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~- 79 (575)
+..+...++.+.|.++|..|.+.|+ ||..+||.||.+|+++|++++|.++|++|. .||..+||+||.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 4455667889999999999999999 999999999999999999999999999997 6999999999999999999
Q ss_pred --HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHh--hCCCCchhHHHHHHHHHHhCCChHHHH
Q 008183 80 --SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK--LSLHDKPFCGSALVHFYSRFRSPDNAK 155 (575)
Q Consensus 80 --a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 155 (575)
|+++|++|...| +.||..||+.+|.+|++.| +++.|.++++.|.+ .|+.||..+|++||++|+++|++++|.
T Consensus 524 eeAl~lf~~M~~~G---v~PD~vTYnsLI~a~~k~G-~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 524 AKAFGAYGIMRSKN---VKPDRVVFNALISACGQSG-AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999 9999999999999999999 99999999999987 678999999999999999999999999
Q ss_pred HHHHhcCC----CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008183 156 KVFDEIRE----RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231 (575)
Q Consensus 156 ~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 231 (575)
++|++|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999976 57799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008183 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308 (575)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 308 (575)
+.||..+|++||.+|+++|++++|.++|++|.. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999999999999999999999999432 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh----cc-------------------CChHHHHHHHHhC
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG----RA-------------------GRLEDAERIAMAM 365 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~-------------------g~~~~A~~~~~~m 365 (575)
+|.+|++.|++++|.++|.+| .+.|+.||..+|++|+.+|. ++ +..++|..+|++|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M-~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQA-KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 999999999999999999999 67799999999999997643 22 2346799999999
Q ss_pred ---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCc
Q 008183 366 ---PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGG 441 (575)
Q Consensus 366 ---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 441 (575)
++.||..||+.++.++...+..+.+..+++.+.... +++..+|+.|++++.+. .++|..++++|...|+.|+-.
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 799999999999988878888888888888776543 66778999999998432 368999999999999998753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=5.2e-24 Score=240.34 Aligned_cols=413 Identities=13% Similarity=0.045 Sum_probs=313.7
Q ss_pred CCCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHH
Q 008183 11 PQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIF 84 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~ 84 (575)
..+..+.+..++..+.+....++.+++.+...|...|++++|.+.|+++. +.+...+..+...+...|+ |.+.|
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45667788888888877555677788888899999999999999998764 3455567777777777777 88888
Q ss_pred HHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-
Q 008183 85 LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE- 163 (575)
Q Consensus 85 ~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~- 163 (575)
+++.... +.+..++..+...+...| +.+.+...+..+.+.+ +.+...+..+...|.+.|++++|..+++.+..
T Consensus 523 ~~~~~~~----~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 523 EKVLTID----PKNLRAILALAGLYLRTG-NEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHhC----cCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 8888753 446677777888888888 8888888888887765 45566777888888888888888888888754
Q ss_pred --CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHH
Q 008183 164 --RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241 (575)
Q Consensus 164 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 241 (575)
.+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 356678888888888888888888888887643 3355667777888888888888888888887753 555777888
Q ss_pred HHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 319 (575)
+...+.+.|++++|.++++.+.. +.+...|..+...+...|++++|++.|+++...+ |+..++..+..++.+.|+.
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 88888888888888888887332 3456667777788888888888888888887753 4446666777788888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 320 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
++|.+.++.+... .+.+...+..+...|.+.|++++|.+.|+++ ...| +..+++.+...+...|+ .+|...++++
T Consensus 753 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 8888888777443 2334677777888888888888888888776 2233 57777777777777777 6788888887
Q ss_pred HhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 398 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.+..|.++..+..+..+|...|++++|.++++++.+.+.
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777777777777788888888888877776554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=6.3e-24 Score=239.64 Aligned_cols=411 Identities=12% Similarity=0.005 Sum_probs=354.9
Q ss_pred CCCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHH
Q 008183 11 PQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIF 84 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~ 84 (575)
..++...+...+..+.+....+......++..|.+.|++++|.++++.+. +++...|+.+...+...|+ |.+.|
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45677888888888888766445667778899999999999999999885 3567789999999999988 99999
Q ss_pred HHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-
Q 008183 85 LSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE- 163 (575)
Q Consensus 85 ~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~- 163 (575)
.++.+.. +.+...+..+...+...| +++.|.+.++.+++.. +.+..++..+...|.+.|+.++|...|+++.+
T Consensus 489 ~~a~~~~----~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 489 EKALSIE----PDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHhhC----CCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998743 345566777788888888 9999999999998876 55778899999999999999999999998854
Q ss_pred --CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHH
Q 008183 164 --RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTG 241 (575)
Q Consensus 164 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 241 (575)
.+...+..++..|.+.|++++|+.+++++... .+.+..+|..+..++...|++++|...+..+.+.. +.+...+..
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 35667888999999999999999999999764 35567889999999999999999999999998865 556778899
Q ss_pred HHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 319 (575)
+...|.+.|++++|.+.|++++. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 99999999999999999998554 4567899999999999999999999999998875 44677888888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFE-PDAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 320 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
++|...+..+.. ..|+..++..+...+.+.|++++|.+.++++ ... .+...+..+...|...|+.++|...++++
T Consensus 720 ~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999998853 3566678888999999999999999999887 233 46888999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 398 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
++..|+++.++..++.++...|+ .+|..++++..+.
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 99999999999999999999999 8899999988764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.93 E-value=3.3e-26 Score=183.48 Aligned_cols=106 Identities=56% Similarity=1.002 Sum_probs=93.9
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCCccccccChHHh--------hhhHHHHHHHHHH
Q 008183 441 GRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREK--------REALWYHSEKLAL 512 (575)
Q Consensus 441 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~h~~~l~~ 512 (575)
++||.++ |.|++|+.+||+. ++..++...||.|++..+.+++.++++ +..+.+|||+||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5899875 9999999999987 455677888999999988887766544 5678999999999
Q ss_pred HHhhhcCCCCCCcEEEEccc-cccCCcchhhHhhhhhcCceEEeecCCccCccc
Q 008183 513 AFGLVSGAPRGKTLRIVKNL-RICRDCHESFKYISRVVEREIVVRDVNRYHRFL 565 (575)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~d~~~~h~~~ 565 (575)
+||++ ++ ++++|+ |+|+|||+++|+||++.+|+|+|||++|||||+
T Consensus 70 afgli-~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLI-NT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhccc-ce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999 55 778888 999999999999999999999999999999997
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=3.1e-19 Score=181.20 Aligned_cols=292 Identities=12% Similarity=0.061 Sum_probs=228.0
Q ss_pred HHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC---HHHHHHHHHHHHhcccH
Q 008183 144 FYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST---MYCVSGALRAAAELAAM 217 (575)
Q Consensus 144 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~ 217 (575)
.+...|++++|...|.++.+ | +..+|..+...+.+.|++++|+.+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 45677888888888888865 2 445678888888888888888888888876543222 24567778888888888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCC------hhhHHHHHHHHHHcCChHHHHHH
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLN------SIAWNAMMAGYAQQGDQSTVLEL 290 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~~li~~~~~~g~~~~A~~l 290 (575)
+.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.++.+.. .|+ ...|..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888887753 45677888888889999999999888887433 121 12355677778889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhC-CC
Q 008183 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRLEDAERIAMAM-PF 367 (575)
Q Consensus 291 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 367 (575)
|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ..+++.++.+|.+.|++++|...++++ ..
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988753 224567777888889999999999999988433 344 456788899999999999999999887 45
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---CCCchHHHHHHHHHhhCCCccCCc
Q 008183 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG---VGRWDEVAEVRKVMKDRRVRKEGG 441 (575)
Q Consensus 368 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 441 (575)
.|+...+..+...+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67777778889999999999999999999999888664 56666666654 568999999999999999988886
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=9.8e-19 Score=170.14 Aligned_cols=377 Identities=13% Similarity=0.093 Sum_probs=279.3
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHH
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLF 106 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll 106 (575)
..+|..+-+.+-..|++++|..+++.+. +..+..|-.+-.++...|+ |...|.+..+ +.|+..-..+-+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq-----lnP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----LNPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----cCcchhhhhcch
Confidence 3467777788888888888888887764 3355678888888888777 8888877776 557666555544
Q ss_pred HHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCC---cchHHHHHHHHHhCCCch
Q 008183 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD---VVCYGAMIVGFAQNSRLV 183 (575)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~ 183 (575)
..+.+..+.++++...+-..++.. +.=..+|+.|-..+-..|++..|..-|++...-| ...|-.|-..|...+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 444443337777777777777654 2234567788888888888888888888876533 346777888888888888
Q ss_pred HHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhh
Q 008183 184 DSLSVFADMRSSDVGSTM-YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262 (575)
Q Consensus 184 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 262 (575)
+|+..|.+... ..|+. ..+..+...|-..|+++.|..-|++.++.. +.-...|+.|.+++-..|++.+|.+.++++
T Consensus 270 ~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 88888877765 35654 466677777778888888888888887753 223677888888888888888888888875
Q ss_pred CC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-
Q 008183 263 LS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG- 338 (575)
Q Consensus 263 ~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 338 (575)
+. .....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++.. .++|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~f 421 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTF 421 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchH
Confidence 54 44566778888888888888888888887766 3444 4567778888888888888888887553 57787
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|.+.|...|+..+|...++..++++|+.+.+|-.++...-
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 678888888888888888888888776 56675 6778888888888888888888888888888888888777776665
Q ss_pred hCCCchH
Q 008183 417 GVGRWDE 423 (575)
Q Consensus 417 ~~g~~~~ 423 (575)
--.+|.+
T Consensus 502 ~vcdw~D 508 (966)
T KOG4626|consen 502 IVCDWTD 508 (966)
T ss_pred HHhcccc
Confidence 5555555
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.7e-18 Score=175.90 Aligned_cols=285 Identities=14% Similarity=0.085 Sum_probs=232.3
Q ss_pred HhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCC-C------cchHHHHHHHHHhCCC
Q 008183 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-D------VVCYGAMIVGFAQNSR 181 (575)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~------~~~~~~li~~~~~~g~ 181 (575)
+...| +++.|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+... + ...|..+...|.+.|+
T Consensus 45 ~~~~~-~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNE-QPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcC-ChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34556 8888999999988865 345667888888999999999999999887652 1 2457788889999999
Q ss_pred chHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHccCCHHHHHH
Q 008183 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN----VIVGTGLIDGYGKAGIVSDARR 257 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~ 257 (575)
+++|+.+|+++.+. ..++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999765 234667888899999999999999999999887653322 2245667888899999999999
Q ss_pred HHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008183 258 VFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335 (575)
Q Consensus 258 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 335 (575)
.|++++. +.+...+..+...|.+.|++++|.++|+++...+......++..+..++...|++++|...++.+...
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--- 278 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--- 278 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 9998554 34566788889999999999999999999987643333567888999999999999999999988533
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHh
Q 008183 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAI---HGKADMASKMGKRLID 399 (575)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 399 (575)
.|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.. .|+.+++..+++++.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 577777789999999999999999999876 667999999998888775 5588999999998886
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=3e-16 Score=179.06 Aligned_cols=407 Identities=12% Similarity=0.064 Sum_probs=263.9
Q ss_pred CCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CCCh---hhHHHHH------------HHHh
Q 008183 13 NTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNI---VSWTALI------------SAHS 75 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~---~~~~~li------------~~~~ 75 (575)
++.+.|...+...++..+.+...+..|-..|.+.|++++|...|++.. .|+. ..|..++ ..+.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555444445555666666666666666666665543 1211 1222221 1223
Q ss_pred cCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChH
Q 008183 76 NSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPD 152 (575)
Q Consensus 76 ~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 152 (575)
+.|+ |+..|++..+.. +.+...+..+-..+...| +++.|.+.++.+++.. +.+...+..+...|. .++.+
T Consensus 363 ~~g~~~eA~~~~~~Al~~~----P~~~~a~~~Lg~~~~~~g-~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD----NTDSYAVLGLGDVAMARK-DYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 3444 666666665532 223334444555555555 6666666666666543 223344444555553 34556
Q ss_pred HHHHHHHhcCCCC------------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCc-CHHHHHHHHHHHHhcccHHH
Q 008183 153 NAKKVFDEIRERD------------VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQ 219 (575)
Q Consensus 153 ~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 219 (575)
+|..+++.++... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 6666665544211 122344555667778888888888887764 34 34556667777888888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC----Ch---------hhHHHHHHHHHHcCChHH
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL----NS---------IAWNAMMAGYAQQGDQST 286 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~ 286 (575)
|...++.+++.. +.+...+..+...+.+.|+.++|.+.++. +... +. ..+..+...+...|+.++
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~-l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNT-LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHh-CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 888888877643 33455555555566777888888888877 4421 11 112234566788899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 287 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
|+.+++. .+++...+..+...+.+.|++++|...|+..... .|+ ...+..++..|...|++++|.+.++..
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9888772 2345556677888889999999999999988543 454 788889999999999999999999987
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhCCCchHHHHHHHHHh-hCCC
Q 008183 366 -PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD------SAYVIVANVLSGVGRWDEVAEVRKVMK-DRRV 436 (575)
Q Consensus 366 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~ 436 (575)
...|+ ..++..+..++...|++++|.++++++++..|.++ ..+..+..++...|++++|...+++.. ..|+
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 34554 66777788888999999999999999998765443 356667889999999999999998775 3445
Q ss_pred cc
Q 008183 437 RK 438 (575)
Q Consensus 437 ~~ 438 (575)
.|
T Consensus 744 ~~ 745 (1157)
T PRK11447 744 TP 745 (1157)
T ss_pred CC
Confidence 43
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1.8e-17 Score=161.48 Aligned_cols=353 Identities=13% Similarity=0.130 Sum_probs=298.5
Q ss_pred hHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCC-ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhH-HHH
Q 008183 66 SWTALISAHSNSPL---SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC-GSA 140 (575)
Q Consensus 66 ~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~ 140 (575)
+|..+-..+-..|+ |+.+++.|.+ .+| ....|..+-.++...| +.+.+.+.+...++.+ |+... .+.
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aie-----l~p~fida~inla~al~~~~-~~~~a~~~~~~alqln--P~l~ca~s~ 189 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIE-----LKPKFIDAYINLAAALVTQG-DLELAVQCFFEALQLN--PDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHh-----cCchhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcC--cchhhhhcc
Confidence 46666667766777 9999999998 445 5668888888888888 9999999998887754 44443 344
Q ss_pred HHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhccc
Q 008183 141 LVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM-YCVSGALRAAAELAA 216 (575)
Q Consensus 141 li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~ 216 (575)
+-...-..|++++|...+.+..+ | =.+.|+.|-..+-.+|+...|+.-|++..+ +.|+- ..|..+-..+...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhc
Confidence 55566668999999988877654 3 357899999999999999999999999876 45663 478888889999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC-ChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL-NSIAWNAMMAGYAQQGDQSTVLELFHLL 294 (575)
Q Consensus 217 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 294 (575)
++.|...|....... +....++..|...|-..|++|-|.+.++++++ +| -...||.|..++-..|+..+|.+.|.+.
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999888887653 44577788888999999999999999998666 34 4678999999999999999999999998
Q ss_pred HHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-
Q 008183 295 EMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD- 370 (575)
Q Consensus 295 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~- 370 (575)
... .| -....+.|...+...|.+++|..+|... ..+.|. ...++.|...|-.+|++++|...+++. .++|+
T Consensus 347 L~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~a---l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 347 LRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKA---LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHH---HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 875 34 3567889999999999999999999865 356777 678899999999999999999999887 78998
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+|+.+...|...|+.+.|.+.+.+++..+|.-..++..|..+|..+|++.+|..-++...+-
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 7899999999999999999999999999999998889999999999999999999999987653
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=4e-16 Score=178.01 Aligned_cols=384 Identities=12% Similarity=0.043 Sum_probs=297.2
Q ss_pred HHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHH---------
Q 008183 40 ITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLAS--------- 104 (575)
Q Consensus 40 i~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~--------- 104 (575)
-..+...|++++|...|++.. +.+...+..+-..+.+.|+ |+..|++..+... -.++...+..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p--~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP--HSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CccchhHHHHHHHhhhHHH
Confidence 456778899999999998774 3367788888888988888 9999999887430 1112111211
Q ss_pred ---HHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHh
Q 008183 105 ---LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQ 178 (575)
Q Consensus 105 ---ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~ 178 (575)
.-..+.+.| +++.|...++.+++.. +.+...+..|...|.+.|++++|.+.|++..+ | +...+..+...|.
T Consensus 354 ~~~~g~~~~~~g-~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKAN-NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 123456777 9999999999999875 45667778889999999999999999998865 3 4456666777664
Q ss_pred CCCchHHHHHHHHhHHCCCCc--------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 179 NSRLVDSLSVFADMRSSDVGS--------TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
.++.++|+.+++.+....... ....+..+...+...|++++|.+.+++.++.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 467899999988764321100 11234456667788999999999999999874 446778888999999999
Q ss_pred CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHhcCCH
Q 008183 251 IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY---------SFLAVLTALCNAGLA 319 (575)
Q Consensus 251 ~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~ 319 (575)
++++|...|++++. +.+...+..+...+...|+.++|+..++.+......++.. .+..+...+...|+.
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999998544 3455566666666788999999999998765432222221 233456678889999
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 320 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
++|..+++. .+++...+..+...+.+.|++++|...|++. ...| +...+..+...+...|+.++|+..++.+
T Consensus 590 ~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998772 1345667788999999999999999999988 4556 4889999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 398 IDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 398 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.+..|+++.++..+..++...|++++|.++++++....
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999998899999999999999999999999987654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.7e-15 Score=162.25 Aligned_cols=388 Identities=11% Similarity=0.026 Sum_probs=281.6
Q ss_pred HHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHh
Q 008183 36 YNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110 (575)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~ 110 (575)
+..+-..|.+.|++++|.+.|++.. .|+...|..+-.+|...|+ |++.+....+.. +.+...+..+-.++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD----PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 3456677888999999999998864 5777788888888888888 999999988742 234567778888888
Q ss_pred hchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---------------------------
Q 008183 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--------------------------- 163 (575)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------------------------- 163 (575)
..| +++.|..-+..+...+...+......+...+. ......+...++.-+.
T Consensus 206 ~lg-~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLG-KYADALLDLTASCIIDGFRNEQSAQAVERLLK-KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcC-CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 888 99888877765544432222111111111111 1111222222221111
Q ss_pred --CCc---chHHHHHHH---HHhCCCchHHHHHHHHhHHCC-CCcC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008183 164 --RDV---VCYGAMIVG---FAQNSRLVDSLSVFADMRSSD-VGST-MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233 (575)
Q Consensus 164 --~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 233 (575)
-+. ..+..+... ....+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++..++.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 000 011111100 122467899999999998764 3343 3467777777888999999999999998863 3
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
.+...+..+...|...|++++|...|+.++. +.+...|..+...|...|++++|+..|++..+.. +.+...+..+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 3466888899999999999999999998555 4567889999999999999999999999998863 235667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDA-A-------VWRALLSFS 381 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~~ 381 (575)
++.+.|++++|...++..... .|+ ...|+.+...+...|++++|.+.|++. .+.|+. . .++..+..+
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 889999999999999988533 454 688899999999999999999999886 344421 1 122222334
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...|++++|..+++++++++|.+..++..++.+|...|++++|.+.|++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44699999999999999999999889999999999999999999999987653
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.4e-15 Score=162.40 Aligned_cols=349 Identities=9% Similarity=-0.026 Sum_probs=257.9
Q ss_pred cCCChHHHHHHHccCCC------CChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhh
Q 008183 45 KSNLLSYSLRLFNHIPS------PNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHA 115 (575)
Q Consensus 45 ~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~ 115 (575)
|..+++.---.|..-++ .+..-.-.++..+.+.|+ |+.++....... +-+...+..+..++...| +
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~----p~~~~~l~~l~~~~l~~g-~ 91 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA----KNGRDLLRRWVISPLASS-Q 91 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC----CCchhHHHHHhhhHhhcC-C
Confidence 34455444445554442 122223345566677777 888888888753 223344555555666677 9
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHh
Q 008183 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADM 192 (575)
Q Consensus 116 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 192 (575)
++.|...++.+++.. +.+...+..+...+.+.|++++|...|++..+ | +...|..+...+...|++++|...++.+
T Consensus 92 ~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 92 PDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999998875 45567788888999999999999999998765 3 5667888899999999999999999988
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhh
Q 008183 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIA 270 (575)
Q Consensus 193 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 270 (575)
......+. ..+.. +..+...|++++|...++.+++....++......+...+.+.|++++|.+.|+.++. +.+...
T Consensus 171 ~~~~P~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 171 AQEVPPRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HHhCCCCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 66432222 22222 334778899999999999887764334445555667888899999999999988554 456677
Q ss_pred HHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 008183 271 WNAMMAGYAQQGDQST----VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCL 345 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 345 (575)
+..+...|.+.|++++ |+..|++..+.. +.+...+..+...+...|++++|...+++... ..|+ ...+..+
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~L 324 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 8888999999999986 789999888753 23566788888889999999999999998753 3565 5667778
Q ss_pred HHHHhccCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 346 ISAMGRAGRLEDAERIAMAM-PFEPDAAV-WRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
...|.+.|++++|...|+++ ...|+... +..+..++...|+.++|...++++.+..|.+.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 88999999999999999887 35666433 44456778889999999999999999887653
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.2e-15 Score=163.06 Aligned_cols=328 Identities=12% Similarity=-0.003 Sum_probs=265.6
Q ss_pred ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHH
Q 008183 98 NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIV 174 (575)
Q Consensus 98 ~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~ 174 (575)
+..-...++..+.+.| +++.|..++...+.....+. .....+.......|++++|...|+++.+ | +...|..+..
T Consensus 41 ~~~~~~~~~~~~~~~g-~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 41 NEQNIILFAIACLRKD-ETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred cccCHHHHHHHHHhcC-CcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3345566778888889 99999999999998875544 4444455666679999999999999865 3 5567888999
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCcC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHH
Q 008183 175 GFAQNSRLVDSLSVFADMRSSDVGST-MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS 253 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 253 (575)
.+.+.|++++|+..|++.... .|+ ...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|+++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHH
Confidence 999999999999999999874 454 5677888889999999999999999887764 2333344333 3478899999
Q ss_pred HHHHHHhhhCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHH
Q 008183 254 DARRVFDENLSV---LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE----SEKWI 326 (575)
Q Consensus 254 ~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~ 326 (575)
+|.+.++.++.. ++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++ |...+
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999985542 233445556778999999999999999998764 3356777788889999999986 78888
Q ss_pred HHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 327 ERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 327 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
++.. .+.|+ ...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++.+.+|.
T Consensus 274 ~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 274 RHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 8774 34565 678899999999999999999999887 45564 677888899999999999999999999999998
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+...+..+..++...|++++|...+++..+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 87666677889999999999999999887653
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=6.3e-15 Score=160.86 Aligned_cols=394 Identities=11% Similarity=0.002 Sum_probs=292.7
Q ss_pred CcccHHHHHHHHhHcCCChHHHHHHHccCCC---CChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHH
Q 008183 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLAS 104 (575)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ 104 (575)
.++...+-.+......|+.++|.+++.+..+ .+...+..+...+...|+ |+++|++..... +.+...+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~ 88 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE----PQNDDYQRG 88 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 3444455567777889999999999988653 344458888888888888 999999988742 334556667
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCC
Q 008183 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSR 181 (575)
Q Consensus 105 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~ 181 (575)
+...+...| +++.|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|.
T Consensus 89 la~~l~~~g-~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAG-QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 777788888 9999999999999874 44555 88889999999999999999999865 3 45566778888889999
Q ss_pred chHHHHHHHHhHHCCCCcCHH------HHHHHHHHHH-----hcccH---HHHHHHHHHHHHh-CCCCchh-HH----HH
Q 008183 182 LVDSLSVFADMRSSDVGSTMY------CVSGALRAAA-----ELAAM---EQCRVIHGHAVVS-GLDRNVI-VG----TG 241 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-g~~~~~~-~~----~~ 241 (575)
.++|++.++.... .|+.. .....+.... ..+++ +.|...++.+++. .-.|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999987653 34321 1112222221 11223 6777788888754 2233221 11 11
Q ss_pred HHHHHHccCCHHHHHHHHhhhCCCC-Chhh--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHh
Q 008183 242 LIDGYGKAGIVSDARRVFDENLSVL-NSIA--WNAMMAGYAQQGDQSTVLELFHLLEMRGFAP---DEYSFLAVLTALCN 315 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~ 315 (575)
.+.++...|++++|.+.|+.++... +... --.+...|...|++++|+..|+++.+..... .......+..++..
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 1334457799999999999955432 1111 1225678999999999999999987653211 13456667778899
Q ss_pred cCCHHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008183 316 AGLAGESEKWIERMKVRYK----------LEPG---LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF 380 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 380 (575)
.|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999998854321 1123 234567778889999999999999997 3455 47889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+...|++++|++.++++++..|++...+..++..+.+.|++++|..+++++.+.
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999865
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=8.9e-14 Score=152.24 Aligned_cols=212 Identities=12% Similarity=0.004 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
++|...+...... .|+......+...+...|++++|...|++++. +++...+..+...+.+.|++++|...|++..+
T Consensus 493 ~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 493 GVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444333 23333323334444577888888888876443 34445566667777888888888888888876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHH
Q 008183 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVW 374 (575)
Q Consensus 297 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~ 374 (575)
.. +++...+..+.......|++++|...+++.. .+.|+...|..+...+.+.|++++|...+++. ...|+ ...+
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~ 646 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ 646 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 53 2222333333444455689999999888774 34678888899999999999999999999887 56675 7788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+.+..++...|+.++|...++++++..|.++.++..+..+|...|++++|...+++..+..
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888899999999999999999999999999999999999999999999999999887643
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=3.4e-14 Score=155.19 Aligned_cols=385 Identities=11% Similarity=-0.000 Sum_probs=286.9
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccC---CCCChhhHHHHHHHHhcCch---HHHHHH
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHI---PSPNIVSWTALISAHSNSPL---SLNIFL 85 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~---a~~~~~ 85 (575)
.+....+.+++.........+...+..+...+.+.|++++|.++|++. .+.+...+..+...+...|+ |+..++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455566677777666533345556899999999999999999999984 34456677788888888888 999999
Q ss_pred HHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-C
Q 008183 86 SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-R 164 (575)
Q Consensus 86 ~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~ 164 (575)
+..+.. +.+.. +..+-.++...| +.+.|...++.+++.. +.+..++..+...+.+.|..+.|.+.++.... |
T Consensus 108 ~~l~~~----P~~~~-~~~la~~l~~~g-~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 108 QLVSGA----PDKAN-LLALAYVYKRAG-RHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHhC----CCCHH-HHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCH
Confidence 998842 33444 777777888888 9999999999999976 44566667788889999999999999998776 1
Q ss_pred Cc------chHHHHHHHHHh-----CCCc---hHHHHHHHHhHHC-CCCcCHH-HHH----HHHHHHHhcccHHHHHHHH
Q 008183 165 DV------VCYGAMIVGFAQ-----NSRL---VDSLSVFADMRSS-DVGSTMY-CVS----GALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 165 ~~------~~~~~li~~~~~-----~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~ 224 (575)
+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+.++...++.++|...|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 10 112222332221 2234 7789999988754 2233321 111 1134556779999999999
Q ss_pred HHHHHhCCC-CchhHHHHHHHHHHccCCHHHHHHHHhhhCCC-CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008183 225 GHAVVSGLD-RNVIVGTGLIDGYGKAGIVSDARRVFDENLSV-LN-----SIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 225 ~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
+.+.+.+.+ |+ .....+..+|...|++++|++.|++++.. |. ...+..+..++...|++++|..+++.+...
T Consensus 261 ~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 261 QRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 999887632 22 22233577899999999999999985442 22 234566777889999999999999999875
Q ss_pred CC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHH
Q 008183 298 GF-----------APDE---YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIA 362 (575)
Q Consensus 298 g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 362 (575)
.. .|+. ..+..+...+...|++++|.+.++++... .|+ ...+..+...+...|++++|++.+
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 21 2342 24456667788899999999999998543 354 788899999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 363 MAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 363 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
++. .+.|+ ...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 988 56776 6777778888899999999999999999999998754
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.71 E-value=3.5e-14 Score=152.14 Aligned_cols=216 Identities=12% Similarity=0.004 Sum_probs=171.8
Q ss_pred ccHHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC-ChhhHHHHHHHHHHcCChHHHHHH
Q 008183 215 AAMEQCRVIHGHAVVSG-L-DRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL-NSIAWNAMMAGYAQQGDQSTVLEL 290 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l 290 (575)
+.+++|...++..++.+ . +.....++.+...|...|++++|...|++.+. .| +..+|..+...+...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56788888898888765 2 33456788888899999999999999998655 33 456888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCC
Q 008183 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFE 368 (575)
Q Consensus 291 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 368 (575)
|++..+.. +.+..++..+...+...|++++|...|++.. .+.|+ ...+..+...+.+.|++++|...|++. ...
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal---~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI---DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99987763 2356788888888999999999999999774 34565 677788888999999999999999887 445
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH-------HHHHHHhCCCchHHHHHHHHHhhC
Q 008183 369 P-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI-------VANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 369 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
| +...|+.+...+...|++++|...+++++++.|.+...+.. ....|...|++++|..++++....
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5 47888899999999999999999999999988764333221 222344569999999999987654
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=6.1e-13 Score=142.84 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=154.2
Q ss_pred HHHHHHccCCHHHHHHHHhhhCCC-C-Ch--hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLSV-L-NS--IAWNAMMAGYAQQGDQSTVLELFHLLEMRG-----FAPDEYSFLAVLTA 312 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~~-~-~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a 312 (575)
.+-++.+.|+..++.+.|+. ++. . .+ .+--++..+|...+++++|+.+|+.+.... ..++......|.-+
T Consensus 298 rl~aL~~r~r~~~vi~~y~~-l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEA-MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHH-hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 35567788999999999998 662 2 22 344567889999999999999999986643 12334446788999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYK----------LEPG---LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRAL 377 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 377 (575)
+...+++++|..+++.+..... -.|+ ...+..++..+.-.|++.+|++.++++ ...| |...+..+
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~ 456 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL 456 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999954211 0122 344556777888999999999999998 3445 68888899
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
...+...|.+.+|++.++.+..++|.+..+....+..+...|+|.+|..+.+.+.+..
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999998887653
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.4e-12 Score=122.62 Aligned_cols=384 Identities=12% Similarity=0.103 Sum_probs=270.9
Q ss_pred CCCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhH---cCCChHHHHHHHc-----------------------cCCCC
Q 008183 10 QPQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYS---KSNLLSYSLRLFN-----------------------HIPSP 62 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~---~~g~~~~A~~~f~-----------------------~m~~~ 62 (575)
.+++.+..+-.++.+|...|. -++.+.-.|+..-+ ...-+-.-++-|- +..++
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PK 205 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPK 205 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCC
Confidence 345667778888888888887 66666665554322 2211111122222 22235
Q ss_pred ChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHH
Q 008183 63 NIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139 (575)
Q Consensus 63 ~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 139 (575)
+..+|..||+|.++--. |.+++++-.... .+.+..+||.+|.+-+- ..++.+..+|+...+.||..|+|
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k---~kv~~~aFN~lI~~~S~-----~~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAK---GKVYREAFNGLIGASSY-----SVGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh---heeeHHhhhhhhhHHHh-----hccHHHHHHHHHhhcCCchHhHH
Confidence 66789999999988765 999999988877 88999999999988644 44589999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHH----HhcC----CCCcchHHHHHHHHHhCCCchH-HHHHHHHhHH----CCCCc----CHH
Q 008183 140 ALVHFYSRFRSPDNAKKVF----DEIR----ERDVVCYGAMIVGFAQNSRLVD-SLSVFADMRS----SDVGS----TMY 202 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~ 202 (575)
+++...++.|+++.|++.+ .+|+ +|...+|..+|..+.+.+++.+ |.....+... ..++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999999988776554 4554 4889999999999999998855 4444444433 22333 556
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCChhhHH
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVVSG----LDRN---VIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWN 272 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 272 (575)
.|.+.++.|.+..+.+.|.+++..+.... +.|+ .+-|..+..+.|....++.-...|+.+++ -|+..+-.
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 78999999999999999999998775431 2333 34566788888999999999999999666 46777777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C---H----------HHHHHHHHHHH----HhcC
Q 008183 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG-L---A----------GESEKWIERMK----VRYK 334 (575)
Q Consensus 273 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~---~----------~~a~~~~~~m~----~~~~ 334 (575)
.++.+..-.|+++-.-++|.+|...|..-+...-..++.-+++.. . . +-|..+++... ....
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 788888889999999999999888875555554444444444433 1 0 01111111110 0012
Q ss_pred CCCChhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAM-------PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 335 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
.+......+.+.-.+.|.|+.++|.++|.-. +..|......-|+.+-.+.++...|..+++-+...+
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 2334556677778888999999998887655 344555555567777777788888888888886655
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=6.8e-12 Score=134.87 Aligned_cols=387 Identities=10% Similarity=-0.027 Sum_probs=283.0
Q ss_pred CCCCCccHHHHHHHHHhhCC-CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHH---HHHhcCch---HHHH
Q 008183 11 PQNTSTDPRIVHARALKSSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALI---SAHSNSPL---SLNI 83 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~---a~~~ 83 (575)
+.++...|...+..+++..+ ..+.++ .++..+...|+.++|+..+++...|+...+..+. ..+...|+ |+++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35666678888888877766 323455 8888888899999999999988776555444433 34566677 9999
Q ss_pred HHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC
Q 008183 84 FLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163 (575)
Q Consensus 84 ~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 163 (575)
|+++.+.. +-|...+..+...+...+ ..+.|.+.+..+.+.. |+...+-.++..+...++..+|...++++.+
T Consensus 125 y~kaL~~d----P~n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 125 WQSSLKKD----PTNPDLISGMIMTQADAG-RGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHhhC----CCCHHHHHHHHHHHhhcC-CHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99998853 234455666677778888 8888888888887753 4455555566666566777668888888865
Q ss_pred --C-CcchHHHHHHHHHhCCCchHHHHHHH------------------------------------------------Hh
Q 008183 164 --R-DVVCYGAMIVGFAQNSRLVDSLSVFA------------------------------------------------DM 192 (575)
Q Consensus 164 --~-~~~~~~~li~~~~~~g~~~~A~~~~~------------------------------------------------~m 192 (575)
| +...+..+..+..+.|-...|+++.. .+
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 34445555556666555554444433 22
Q ss_pred HH-CCCCcCH-H----HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC
Q 008183 193 RS-SDVGSTM-Y----CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266 (575)
Q Consensus 193 ~~-~g~~p~~-~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 266 (575)
.. .+..|.. . ...--+-++...++..++.+.++.+...|.+....+-.++.++|...++.++|+.+|.......
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 21 1111221 1 1223455667788999999999999998877778899999999999999999999999844421
Q ss_pred --------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------------CCCHHH-HHHHHHHHHhcCCHHHHHH
Q 008183 267 --------NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-------------APDEYS-FLAVLTALCNAGLAGESEK 324 (575)
Q Consensus 267 --------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------~p~~~t-~~~ll~a~~~~g~~~~a~~ 324 (575)
+......|.-+|...+++++|..+++.+.+... .||-.. +..++..+.-.|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 233357789999999999999999999987311 233333 3445666788999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 325 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.++++... -+-|......+.+.+...|.+.+|++.++.. .+.|+ ..+......++...+++++|..+.+.+.+..|
T Consensus 438 ~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 438 KLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 99999533 2335888899999999999999999999776 45675 67777888888999999999999999999999
Q ss_pred CCchh
Q 008183 403 YDDSA 407 (575)
Q Consensus 403 ~~~~~ 407 (575)
+++.+
T Consensus 516 e~~~~ 520 (822)
T PRK14574 516 EDIPS 520 (822)
T ss_pred CchhH
Confidence 98754
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.63 E-value=8.7e-12 Score=136.81 Aligned_cols=380 Identities=10% Similarity=-0.015 Sum_probs=278.6
Q ss_pred HHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCc--h---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhc
Q 008183 38 NLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSP--L---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112 (575)
Q Consensus 38 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g--~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~ 112 (575)
.++..+.+.++++.|.++.+ ..+.+.. ..++.....+ . +...+..|-+.. +-+....-.+--.....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~----~~~~~~l~q~~~~~~~~ 389 (987)
T PRK09782 318 ATLPVLLKEGQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQE----PANLTRLDQLTWQLMQN 389 (987)
T ss_pred HHHHHHHhccHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHc
Confidence 34788889999998888855 3333332 3444433322 2 666677777642 22433343444445567
Q ss_pred hhhHHHHHHHHHHHHhh-C-CCCchhHHHHHHHHHHhCCChH---HHHHH------------HH-------------hcC
Q 008183 113 SHAFLFGLSLHSLSLKL-S-LHDKPFCGSALVHFYSRFRSPD---NAKKV------------FD-------------EIR 162 (575)
Q Consensus 113 ~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~---~A~~~------------f~-------------~m~ 162 (575)
| +.++|.+++...... + -..+....+.|+..|.+.+.++ +|..+ .. ...
T Consensus 390 ~-~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 390 G-QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred c-cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 7 899999999988773 1 1235566778899999887733 33222 11 111
Q ss_pred C---C--CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchh
Q 008183 163 E---R--DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237 (575)
Q Consensus 163 ~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 237 (575)
. + +...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++.+... +|+..
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~ 543 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNE 543 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcH
Confidence 1 2 45567777777776 8999999988887764 477665555556667899999999999987654 45555
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC-CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS-VL-NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 315 (575)
.+..+...+.+.|++++|.+.|+..+. .| +...+..+.......|++++|+..|++..+. .|+...+..+..++.+
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 667778889999999999999998544 22 2223333333445569999999999999874 5678889999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASK 392 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 392 (575)
.|+.++|...+++.. .+.|+ ...++.+...+...|++++|...|++. ...| +...+..+..++...|++++|+.
T Consensus 622 lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 622 RHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999885 34676 678888888999999999999999987 5567 48889999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.++++++..|.+..+.........+..+++.|.+-+++--.-++
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999988888888888888888888887766554433
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=3.3e-14 Score=136.92 Aligned_cols=256 Identities=16% Similarity=0.097 Sum_probs=112.0
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHH-HHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG-ALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
+...+.+.|++++|++++.+.......|+...|-. +...+...++.+.|.+.++.+...+ +.+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 35566677888888887755443322344444333 3444555777888888888887765 3356667777777 6888
Q ss_pred CHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008183 251 IVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIER 328 (575)
Q Consensus 251 ~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 328 (575)
++++|.+++....+ .++...+..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888876333 4566777888888999999999999999987543 355777788888889999999999999998
Q ss_pred HHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 329 MKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 329 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
.... .|+ ....+.++..+...|+.+++.++++... ...|...|..+..++...|+.++|...+++..+..|.|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8543 675 7788899999999999999888877661 234566788999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 406 SAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.....+.+++...|+.++|.++.++.-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987654
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.1e-10 Score=108.16 Aligned_cols=396 Identities=13% Similarity=0.050 Sum_probs=265.2
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCC-CCChh---hHHHHHHH--HhcCch----HHHHHHHHhhCCCC---------
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIV---SWTALISA--HSNSPL----SLNIFLSMLRHPTL--------- 93 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~~~---~~~~li~~--~~~~g~----a~~~~~~m~~~~~~--------- 93 (575)
+.+-|.|+++-. .|.+.++.-+++.|. +.+.+ .--.|++. |-.+.+ -.+-|-.|...|..
T Consensus 116 V~~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 456777877644 788899999998885 21111 11111111 111111 23344444333210
Q ss_pred -------CcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC----
Q 008183 94 -------SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR---- 162 (575)
Q Consensus 94 -------~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---- 162 (575)
..+-+..||.++|.+.++.. ..+.|..++.+........+..++|.+|.+-+-.-+ .++..+|.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFS-SLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 03346679999999999998 999999999988888778888999999876443322 55566664
Q ss_pred CCCcchHHHHHHHHHhCCCchH----HHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHH-HHHHHHHHHH----hCCC
Q 008183 163 ERDVVCYGAMIVGFAQNSRLVD----SLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ-CRVIHGHAVV----SGLD 233 (575)
Q Consensus 163 ~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~ 233 (575)
.||..|+|+++++.++.|+++. |++++.+|++-|+.|...+|..+|..+.+.++..+ +..+...+.. ..+.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 4899999999999999998764 56788899999999999999999998888877754 3333333322 2233
Q ss_pred C----chhHHHHHHHHHHccCCHHHHHHHHhhhCC--------CCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 008183 234 R----NVIVGTGLIDGYGKAGIVSDARRVFDENLS--------VLN---SIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298 (575)
Q Consensus 234 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 298 (575)
| |...+...++.|.+..+.+-|.++..- +. .++ ..-|..+....++....+.-+..|+.|.-.-
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~l-l~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGL-LKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHH-HHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 3 455666778888888888888887654 33 111 2345667778888889999999999998777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC-Ch--------HH-----HHHHHH-
Q 008183 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG-RL--------ED-----AERIAM- 363 (575)
Q Consensus 299 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~~~~- 363 (575)
.-|+..+...++.|..-.|.++-..+++..+ ..+|-.-+...-.-+...+++.. +. .. |..+++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~-~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDS-KEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHH-HHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999888888888 45554333333333344444433 11 11 111221
Q ss_pred ------hC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCch--hHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 364 ------AM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN---PYDDS--AYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 364 ------~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
+| ...-.....+.++-.+.+.|..++|.+++..+.+.+ |..+. +..-|++.-...+....|..+++-|
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 122235556666777788999999999998886533 43332 3345666667778888899999888
Q ss_pred hhCCC
Q 008183 432 KDRRV 436 (575)
Q Consensus 432 ~~~~~ 436 (575)
...+.
T Consensus 588 ~~~n~ 592 (625)
T KOG4422|consen 588 SAFNL 592 (625)
T ss_pred HHcCc
Confidence 76554
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.48 E-value=4e-10 Score=116.65 Aligned_cols=423 Identities=12% Similarity=0.075 Sum_probs=290.9
Q ss_pred CccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHH--HhcCch---HHHHHHHH
Q 008183 15 STDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISA--HSNSPL---SLNIFLSM 87 (575)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~--~~~~g~---a~~~~~~m 87 (575)
.+.+.+-|..+++..++|....--=.......+++-.|..+|.... .|...+=..+..+ +.+.|. |+..|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 4566666666666554333221111222334678999999998742 2222221222222 334444 88888888
Q ss_pred hhCCCCCcCCChhhHHHHHHHHh----hchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC
Q 008183 88 LRHPTLSFLPNQRTLASLFKTCA----SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE 163 (575)
Q Consensus 88 ~~~~~~~~~p~~~t~~~ll~~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 163 (575)
.+ +.|+...-...|..+. ... .+..|.+++....+.. +.++.+.+.|.+.|.-.|++..++.+...+..
T Consensus 226 lq-----Ldp~~v~alv~L~~~~l~~~d~~-s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 226 LQ-----LDPTCVSALVALGEVDLNFNDSD-SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred Hh-----cChhhHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 87 4453332222222211 122 4666777777666654 56888999999999999999999999887765
Q ss_pred CC------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHH--HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 008183 164 RD------VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC--VSGALRAAAELAAMEQCRVIHGHAVVSGLDRN 235 (575)
Q Consensus 164 ~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 235 (575)
.+ ..+|-.+.++|...|++++|...|.+.... .||.++ +..+...+.+.|+++.+...|+.+.+.. +.+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~ 375 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNN 375 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cch
Confidence 32 346888999999999999999999887654 455543 4556788889999999999999998873 566
Q ss_pred hhHHHHHHHHHHccC----CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHH----HHcCCCCCHHH
Q 008183 236 VIVGTGLIDGYGKAG----IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLL----EMRGFAPDEYS 305 (575)
Q Consensus 236 ~~~~~~li~~~~~~g----~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t 305 (575)
..+...|...|...+ ..+.|..++.+... +.|...|-.+...|-+ +++..++..|... ...+-.+....
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 778888888888775 56777777777333 3466677666555544 4555557777544 45566688899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCChh------HHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHH
Q 008183 306 FLAVLTALCNAGLAGESEKWIERMKVRYK--LEPGLE------HYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWR 375 (575)
Q Consensus 306 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 375 (575)
.|.+.......|+++.|...|.....+.. ..+|.. +--.+...+-..++.+.|.+.|..+ ...|. +..|-
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~yl 534 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYL 534 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHH
Confidence 99999999999999999999987754411 223331 2223445556678999999999888 44676 55666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEEC
Q 008183 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448 (575)
Q Consensus 376 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 448 (575)
-|+......++..+|...++.+++.+..++.++..+.+.|.+...|..|.+-|+...++-...++..|.+.++
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 6665555668899999999999999999999999999999999999999998887776554444444544433
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=5.1e-11 Score=112.85 Aligned_cols=402 Identities=12% Similarity=0.079 Sum_probs=248.5
Q ss_pred cCCCCCCCCccHHHHHHHHHhhCC-CcccHH-HHHHHHhHcCCChHHHHHHHcc----CCCCCh----hhHHHHHHHHhc
Q 008183 7 QQPQPQNTSTDPRIVHARALKSSQ-ADRSIY-NNLITNYSKSNLLSYSLRLFNH----IPSPNI----VSWTALISAHSN 76 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~-~~li~~~~~~g~~~~A~~~f~~----m~~~~~----~~~~~li~~~~~ 76 (575)
++-.......+|..-+..+++... |+.... -.+-+.|.+...+.+|.+.++- .|.-+- ...|.+--.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 333333334455555556666665 554322 2234556666777777776642 232111 123333334667
Q ss_pred Cch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCc------------hhHHHHH
Q 008183 77 SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK------------PFCGSAL 141 (575)
Q Consensus 77 ~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~------------~~~~~~l 141 (575)
.|. |+..|+...+ ..||..+-..++-.+...| +-+..++.|..++..-..+| ....|--
T Consensus 289 ~gqy~dainsfdh~m~-----~~pn~~a~~nl~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCME-----EAPNFIAALNLIICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred cccchhhHhhHHHHHH-----hCccHHhhhhhhhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 776 8888888777 4577665444444444556 77778888877765432222 2222211
Q ss_pred H-----HHHHhCC--ChHHHH----HHHHhcCCCCcch---HH------------------HHHHHHHhCCCchHHHHHH
Q 008183 142 V-----HFYSRFR--SPDNAK----KVFDEIRERDVVC---YG------------------AMIVGFAQNSRLVDSLSVF 189 (575)
Q Consensus 142 i-----~~~~~~g--~~~~A~----~~f~~m~~~~~~~---~~------------------~li~~~~~~g~~~~A~~~~ 189 (575)
| .-.-+.. +.+++. ++..-...||-.. |. .-..-|.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1 1111111 111111 1111111222110 11 0123467888888888888
Q ss_pred HHhHHCCCCcCHHHHH--HHHH----------------------------------HHHhcccHHHHHHHHHHHHHhCCC
Q 008183 190 ADMRSSDVGSTMYCVS--GALR----------------------------------AAAELAAMEQCRVIHGHAVVSGLD 233 (575)
Q Consensus 190 ~~m~~~g~~p~~~t~~--~ll~----------------------------------~~~~~~~~~~a~~~~~~~~~~g~~ 233 (575)
.-+.+..-+.-...-+ +++. .....|++++|...|++.+...-.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 7775433221111100 0110 111237788888888887765422
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
-....|| +.-.+-+.|++++|++.|-+ +. ..++...-.+.+.|-...++..|++++-+.... ++.|...+.-|.
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~k-lh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLK-LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 2222333 33346678889999988876 33 345555556677788888899999888665543 555677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH-HcCCh
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKL-EPGLEHYTCLISAMGRAGRLEDAERIAMAMP-FEPDAAVWRALLSFSA-IHGKA 387 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~-~~g~~ 387 (575)
..|-+.|+-.+|.+.+- ..+.. +.+..+..-|..-|....-+++|..+|++.. ++|+..-|..++..|. +.|++
T Consensus 600 dlydqegdksqafq~~y---dsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHY---DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhh---hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 99999999999998875 33343 4468888888888899999999999999984 7899999999998775 57999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 388 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
+.|..+++.....-|.+......|++.+...|.
T Consensus 677 qka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999999888875
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.45 E-value=4e-10 Score=115.87 Aligned_cols=329 Identities=11% Similarity=0.069 Sum_probs=245.8
Q ss_pred chhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhc---CCCCcchHHHHHHHHHhCCCchHHHHH
Q 008183 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI---RERDVVCYGAMIVGFAQNSRLVDSLSV 188 (575)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~ 188 (575)
.| +++.|..++.++++.. +.+...|-.|-..|-..|+.+++...+-.. ...|..-|-.+..-..+.|++++|.-.
T Consensus 152 rg-~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RG-DLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hC-CHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 37 9999999999999987 556778999999999999999998876543 234778899998889999999999999
Q ss_pred HHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHccCCHHHHHHHHhhhCC
Q 008183 189 FADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGT----GLIDGYGKAGIVSDARRVFDENLS 264 (575)
Q Consensus 189 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~ 264 (575)
|.+..+.. +++...+---...|-+.|+...|..-+.++....-+.|..-.. ..+..|...++-+.|.+.+...+.
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998753 4455555566677888999999999999888764323332222 335566677777888888877444
Q ss_pred ----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHH
Q 008183 265 ----VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF---------------------------APDEYSFLAVLTAL 313 (575)
Q Consensus 265 ----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------~p~~~t~~~ll~a~ 313 (575)
.-+...+|.++..|.+...++.|......+..... .++...+ .+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence 23456788888899999999999988888776211 2222221 122223
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHhccCChHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCChH
Q 008183 314 CNAGLAGESEKWIERMKVRYKLEP--GLEHYTCLISAMGRAGRLEDAERIAMAMPF---EPDAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 314 ~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~~~~~~~ll~~~~~~g~~~ 388 (575)
.+....+....+.... ....+.| +...|.-+.++|...|++.+|.++|..+-. --+...|--+...|...|..+
T Consensus 388 ~~L~~~e~~e~ll~~l-~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFL-VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHH-HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 3444444444444434 4445334 478899999999999999999999999821 224778999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEE
Q 008183 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 445 (575)
+|.+.++.++...|++..+-..|...|.+.|+.++|.+++..+..-+-..-+++.|-
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 999999999999999999999999999999999999999998763332222445553
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=1.8e-10 Score=116.24 Aligned_cols=274 Identities=12% Similarity=0.054 Sum_probs=188.2
Q ss_pred CCChHHHHHHHHhcCCC--Ccch-HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHH--HHHHHHHhcccHHHHHH
Q 008183 148 FRSPDNAKKVFDEIRER--DVVC-YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS--GALRAAAELAAMEQCRV 222 (575)
Q Consensus 148 ~g~~~~A~~~f~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 222 (575)
.|+++.|++.+...++. +... |-....+..+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888888776553 2222 322233447788888888888888653 45543332 33556677888888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC---Ch--------hhHHHHHHHHHHcCChHHHHHHH
Q 008183 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL---NS--------IAWNAMMAGYAQQGDQSTVLELF 291 (575)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~l~ 291 (575)
.++.+.+.. +.+..+...+...|.+.|++++|.+++.. +.+. +. .+|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~-l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPS-MAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888887765 55677888888888888888888888877 4311 11 13333444444455556666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC
Q 008183 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD 370 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 370 (575)
+.+.+. .+.+......+..++...|+.++|..++++... ..|+... .++.+....++.+++.+..++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665433 344667777788888888999998888877643 2444422 2233334558888888888776 34564
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 371 -AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 371 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+..+..+...|...+++++|.+.|+.+.+..|++ ..|..|..++.+.|+.++|.+++++-.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6667788888888889999999999988888854 457788888889999998888887543
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3e-11 Score=120.32 Aligned_cols=277 Identities=10% Similarity=0.033 Sum_probs=216.2
Q ss_pred ChHHHHHHHHhcCC--CCcc-hHHHHHHHHHhCCCchHHHHHHHHhHHCCC--CcCHHHHHHHHHHHHhcccHHHHHHHH
Q 008183 150 SPDNAKKVFDEIRE--RDVV-CYGAMIVGFAQNSRLVDSLSVFADMRSSDV--GSTMYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 150 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
+..+|...|..++. +|.. ....+-.+|...+++++|.++|+..++... .-+..+|.+.|..+-+.- +..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 45789999988765 3443 345567889999999999999999976421 125678888887654321 22222
Q ss_pred H-HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008183 225 G-HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301 (575)
Q Consensus 225 ~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 301 (575)
. .+++. -+-.+.+|-++.+.|+-.++.+.|++.|++++. +....+|+.+..-+.....+|+|...|+..... .|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 2 22322 255688999999999999999999999998666 447889999999999999999999999987653 22
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 008183 302 -DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRAL 377 (575)
Q Consensus 302 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 377 (575)
+-..|..+...|.+.++++.|+-.|+... .+.|. ......+...+-+.|+.++|++++++. .+.| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33456667778999999999999998663 66776 556667778889999999999999998 3344 55555556
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
+..+...+++++|.+.++++.+.-|++..+|..++..|.+.|+.+.|..-|..+.+-..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66777889999999999999999999999999999999999999999998888776543
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1e-09 Score=113.68 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCchhHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN--PYDDSAYVIVANV 414 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~ 414 (575)
...-|.+.-.++..|++.+|..+|.... ...+..+|-.+...|...|++..|.++|+...+.. ..++.....|..+
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 3333444444444444444444444441 11123344444444444444444444444444321 1222334444444
Q ss_pred HHhCCCchHHHHHHH
Q 008183 415 LSGVGRWDEVAEVRK 429 (575)
Q Consensus 415 ~~~~g~~~~a~~~~~ 429 (575)
+.++|++.+|.+.+.
T Consensus 726 ~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALL 740 (1018)
T ss_pred HHHhhhHHHHHHHHH
Confidence 444444444444443
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.3e-08 Score=97.59 Aligned_cols=387 Identities=12% Similarity=0.106 Sum_probs=281.8
Q ss_pred HcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChh-hHHHHHHHHhhchhhH
Q 008183 44 SKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQR-TLASLFKTCASLSHAF 116 (575)
Q Consensus 44 ~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~-t~~~ll~~~~~~~~~~ 116 (575)
-..+++..|+.+|++.. .++...|-.-+..=.++.. |..+|+.... ..|-+. .|.--+-.=-..| ++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt-----~lPRVdqlWyKY~ymEE~Lg-Ni 157 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT-----ILPRVDQLWYKYIYMEEMLG-NI 157 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHhc-cc
Confidence 34567788999998875 4677778777777666655 9999998887 444332 2222222333456 89
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR--ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 117 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
..|+++|+...+ ..|+...|++.|++=.+...++.|..+++... .|++.+|--...-=-++|+...|..+|....+
T Consensus 158 ~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 158 AGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999998876 58999999999999999999999999999854 58999998888888899999999999998866
Q ss_pred CCCCcCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHccCCHHHHHHHH--------h
Q 008183 195 SDVGSTM----YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN--VIVGTGLIDGYGKAGIVSDARRVF--------D 260 (575)
Q Consensus 195 ~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~ 260 (575)
. -.|. ..|.+...-=.....++.|.-+|...+.. ++.+ ...|..+...--+-|+.....+.. +
T Consensus 236 ~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 236 F--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred H--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 3 2223 33444444444567888899999988876 3444 456666666666667655444433 1
Q ss_pred hhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHH
Q 008183 261 ENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE-------YSFLAVLTAL---CNAGLAGESEKWIER 328 (575)
Q Consensus 261 ~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~ 328 (575)
..+. +-|-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+.++++.
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2121 346677877777777889999999999998875 55532 2232222222 246788999999987
Q ss_pred HHHhcCCCCC-hhHHHHHHHHH----hccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 329 MKVRYKLEPG-LEHYTCLISAM----GRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 329 m~~~~~~~p~-~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.. + +-|. ..|+.-+=-+| .++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++.+|
T Consensus 392 ~l-~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 392 CL-D--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HH-h--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 73 3 4454 45555444444 5788899999988765 7788888888888888889999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEE
Q 008183 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445 (575)
Q Consensus 403 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 445 (575)
.+..+|.-....-...|+++.|..+|+...++.....|..-|-
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 9988998888888899999999999998877654444544453
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=1.8e-09 Score=109.06 Aligned_cols=277 Identities=13% Similarity=-0.005 Sum_probs=209.9
Q ss_pred hhhHHHHHHHHHHHHhhCCCCchhHHHHH-HHHHHhCCChHHHHHHHHhcCC--CCcchHH--HHHHHHHhCCCchHHHH
Q 008183 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSAL-VHFYSRFRSPDNAKKVFDEIRE--RDVVCYG--AMIVGFAQNSRLVDSLS 187 (575)
Q Consensus 113 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~--~~~~~~~--~li~~~~~~g~~~~A~~ 187 (575)
| +++.|++......+.. +++.++-.+ .....+.|+++.|...|.++.+ |+....- .....+...|++++|..
T Consensus 98 G-d~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 G-DYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred C-CHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5 8888887776654432 233444333 3444789999999999999876 3433222 33567889999999999
Q ss_pred HHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHccCCHHHHHHHHh
Q 008183 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV-------IVGTGLIDGYGKAGIVSDARRVFD 260 (575)
Q Consensus 188 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 260 (575)
.++++.+.. +-+......+...+.+.|+++.+..++..+.+.+..++. ..|..++....+..+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998754 334567788889999999999999999999988754332 133344444455566677778887
Q ss_pred hhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 008183 261 ENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337 (575)
Q Consensus 261 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 337 (575)
. ++ +.+......+..++...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...++ .|
T Consensus 254 ~-lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P 325 (398)
T PRK10747 254 N-QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HG 325 (398)
T ss_pred h-CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CC
Confidence 7 65 457778888999999999999999999998874 4444221 233444569999999999988654 45
Q ss_pred C-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 338 G-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 338 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
+ ...+.++...+.+.|++++|.+.|+.. ...|+..++..|...+...|+.++|.+++++.+.+-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5 567889999999999999999999998 678999999999999999999999999999987643
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=8.9e-11 Score=116.98 Aligned_cols=280 Identities=15% Similarity=0.063 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC------CCcchHHHHHHHHHhCCCchHHHHHH
Q 008183 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE------RDVVCYGAMIVGFAQNSRLVDSLSVF 189 (575)
Q Consensus 116 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 189 (575)
..+|...+.. +-.....+..+...+-.+|...+++++|+++|+.+.+ .+...|.+.+..+-+. -++..+
T Consensus 335 ~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 4556666666 3333444557888889999999999999999999875 3778899888765432 223322
Q ss_pred HHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCC
Q 008183 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLN 267 (575)
Q Consensus 190 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 267 (575)
.+-.-.--+-.+.||.++.+.|+-+++.+.|.+.|+..++.. +...++|+.+..-+.....+|.|...|+.++. .++
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 222111123456799999999999999999999999998864 33789999999999999999999999998554 455
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLI 346 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 346 (575)
-.+|.-|...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|++++++.. .++|. ...----+
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRA 564 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHH
Confidence 566777888899999999999999999886433 56777777788889999999999999774 34553 32323345
Q ss_pred HHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
..+...++.++|+..++++ .+.|+ ...+..+...|.+.|+.+.|+.-|..+.+++|.-.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5667789999999999999 36675 67788888999999999999999999999998643
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=2.5e-09 Score=108.63 Aligned_cols=278 Identities=11% Similarity=-0.041 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHHhhCCCCchhH-HHHHHHHHHhCCChHHHHHHHHhcCC--CCc--chHHHHHHHHHhCCCchHHHHHH
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFC-GSALVHFYSRFRSPDNAKKVFDEIRE--RDV--VCYGAMIVGFAQNSRLVDSLSVF 189 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~~~ 189 (575)
+++.|++......+.. |++.. +-.....+.+.|+.+.|...|.+..+ |+. ...-+....+.+.|+++.|.+.+
T Consensus 99 ~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 99 DYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6777777766655543 33222 22334556666777777777766532 232 12233455666677777777777
Q ss_pred HHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-------HccCCHHHHHHHHhhh
Q 008183 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY-------GKAGIVSDARRVFDEN 262 (575)
Q Consensus 190 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-------~~~g~~~~A~~~~~~~ 262 (575)
+++.+.. +-+......+...+...|+++.+.+.+..+.+.+..+.......-..++ ......+...+.+..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~- 254 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN- 254 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-
Confidence 7776653 2234456666667777777777777777777765432222111111111 111222333334443
Q ss_pred CCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHH--HHhcCCHHHHHHHHHHHHHhcCC
Q 008183 263 LSV---LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS--FLAVLTA--LCNAGLAGESEKWIERMKVRYKL 335 (575)
Q Consensus 263 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~ 335 (575)
.+. .+...+..+...+...|+.++|.+++++..+.. ||... +. ++.. ....++.+.+.+.++...+...-
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 331 356666666777777777777777777766642 22221 11 1111 12235556666666555333211
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 336 EPGLEHYTCLISAMGRAGRLEDAERIAMA--M-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12113444566666666777777776662 2 3456666666666666666666666666666543
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=1.6e-08 Score=96.96 Aligned_cols=410 Identities=11% Similarity=0.097 Sum_probs=307.7
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CCCh-hhHHHHHHHHhcCch---HHHHHH
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNI-VSWTALISAHSNSPL---SLNIFL 85 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~-~~~~~li~~~~~~g~---a~~~~~ 85 (575)
+.....|+.++.+.+.....+..+|-.-+.+=.++..+..|+.+|++.. -|-+ ..|---+..=-..|+ |.++|.
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4556789999999988766889999999999999999999999999864 1322 234333333223344 999999
Q ss_pred HHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCC-
Q 008183 86 SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER- 164 (575)
Q Consensus 86 ~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~- 164 (575)
.-.. ..|+...|.+.++-=.+.. ..+.|+.+++..+-. .|++..|-.....=-++|.+..|..+|+...+.
T Consensus 166 rW~~-----w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 166 RWME-----WEPDEQAWLSFIKFELRYK-EIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHc-----CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 9887 7899999999999999998 999999999988764 588889988888889999999999999887651
Q ss_pred -----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC--HHHHHHHHHHHHhcccHHHHHH--------HHHHHHH
Q 008183 165 -----DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST--MYCVSGALRAAAELAAMEQCRV--------IHGHAVV 229 (575)
Q Consensus 165 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~--------~~~~~~~ 229 (575)
+...+++...-=.++..++.|.-+|.-.... ++.+ ...|......=-+-|+...... -|+.+++
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 2234455444445667788888888877664 2222 3344444433334454433222 2344444
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCCh---hhHHHHHH--------HHHHcCChHHHHHHHHHHHHc
Q 008183 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNS---IAWNAMMA--------GYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 230 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~ 297 (575)
.+ +.|-.++--.+..-...|+.+...++|+.++. .|.. ..|.--|- .=....+.+.+.++|+...+.
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 43 56677777888888889999999999998765 2222 22332221 123578899999999999884
Q ss_pred CCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CH
Q 008183 298 GFAPDEYSFLAVLTALC----NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DA 371 (575)
Q Consensus 298 g~~p~~~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 371 (575)
++-...||.-+=-.|+ +..++..|.+++.... |.-|...++...|..-.+.+.++.+..++++. ...| |-
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 5556788877655554 4688999999998664 88999999999999999999999999999987 5566 68
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYD--DSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.+|.-....-...|+.+.|..+|+-+++....+ ...|-..|+.-...|.++.|..+++++.++.
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 899988888889999999999999988755322 2367778888889999999999999998764
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.37 E-value=6.5e-12 Score=121.01 Aligned_cols=211 Identities=15% Similarity=0.076 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADM 192 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 192 (575)
+.+.+.+.++.+...+.. ++..+..++.. ...+++++|.+++...-+ ++...+..++..+.+.++++++.++++..
T Consensus 59 ~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred cccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 555566666655554422 44455555555 456666666666554422 34455555666666666666666666665
Q ss_pred HHCC-CCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChh
Q 008183 193 RSSD-VGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSI 269 (575)
Q Consensus 193 ~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~ 269 (575)
.... ..++...|......+.+.|+.++|...++..++.. |.|..+.+.++..+...|+.+++.+++..... +.|..
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~ 215 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD 215 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH
Confidence 4322 23344555555566666666666666666666653 33455566666666666666665555544111 33445
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
.|..+..+|...|+.++|+..|++..+.. +.|..+...+..++...|+.++|.++..+.
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 55566666666666666666666655532 225555555666666666666666655443
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.37 E-value=4.5e-08 Score=97.42 Aligned_cols=417 Identities=13% Similarity=0.056 Sum_probs=232.2
Q ss_pred CccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--------CCChhhHHHHHHHHhcCch---HHHH
Q 008183 15 STDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--------SPNIVSWTALISAHSNSPL---SLNI 83 (575)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~---a~~~ 83 (575)
-..|+.+.....+.-+.+..+|.+-...=-..|+.+...++.++-. +-|...|-.=..++-..|. +..+
T Consensus 422 YenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAI 501 (913)
T KOG0495|consen 422 YENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAI 501 (913)
T ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHH
Confidence 3446666666655544566666666666666777777777765432 1122223222222322222 2222
Q ss_pred HHHHhhCCCCCcCC--ChhhHHHHHHHHhhchhhHHHHHHHHHHH----------------------------------H
Q 008183 84 FLSMLRHPTLSFLP--NQRTLASLFKTCASLSHAFLFGLSLHSLS----------------------------------L 127 (575)
Q Consensus 84 ~~~m~~~~~~~~~p--~~~t~~~ll~~~~~~~~~~~~a~~~~~~~----------------------------------~ 127 (575)
......-| +.- -..||...-..|.+.+ .++-++.++... +
T Consensus 502 i~avigig---vEeed~~~tw~~da~~~~k~~-~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 502 IRAVIGIG---VEEEDRKSTWLDDAQSCEKRP-AIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHhhc---cccchhHhHHhhhHHHHHhcc-hHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 22222222 111 1134444444444444 444444444444 4
Q ss_pred hhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHH
Q 008183 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204 (575)
Q Consensus 128 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 204 (575)
..- +.....|-....-+...|++..|+.++++.-+ .+...|-+-+..-..+.++++|..+|.+... ..|+...|
T Consensus 578 ~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~ 654 (913)
T KOG0495|consen 578 EQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVW 654 (913)
T ss_pred HhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhh
Confidence 332 22333344444444445555555555554432 1334455555555555555566655555544 23444444
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcC
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQG 282 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g 282 (575)
.--++.---++..++|.++++..++. ++.-.-.|-.+...+-+.++++.|.+.|..-.. +..+..|-.|...=-+.|
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 44444444455555566555555543 222234445555555555666666655554222 223345555555555556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 362 (575)
.+-+|..+|+.-...+.. |...|...|..=.+.|+.+.|..++.+...+ ++.+...|..-|.+..+.++-..+.+.+
T Consensus 734 ~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred chhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHH
Confidence 666666666666555433 5555666666666666666666665555332 2334555666666666655555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCce
Q 008183 363 MAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGR 442 (575)
Q Consensus 363 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 442 (575)
++. +.|+...-.+...+....+++.|.+.|.+.+..+|++..+|.-+...+...|.-++-.+++...... .|.-|.
T Consensus 811 kkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~ 886 (913)
T KOG0495|consen 811 KKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGE 886 (913)
T ss_pred Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCc
Confidence 444 4456666677777888889999999999999999999999999999999999999999999888764 345566
Q ss_pred eEEE
Q 008183 443 SWIE 446 (575)
Q Consensus 443 s~~~ 446 (575)
.|..
T Consensus 887 ~W~a 890 (913)
T KOG0495|consen 887 LWQA 890 (913)
T ss_pred HHHH
Confidence 7763
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=1.8e-09 Score=109.65 Aligned_cols=291 Identities=9% Similarity=-0.041 Sum_probs=206.3
Q ss_pred hHHHHHHHHhc--Cch---HHHHHHHHhhCCCCCcCCChhhH-HHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHH
Q 008183 66 SWTALISAHSN--SPL---SLNIFLSMLRHPTLSFLPNQRTL-ASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS 139 (575)
Q Consensus 66 ~~~~li~~~~~--~g~---a~~~~~~m~~~~~~~~~p~~~t~-~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 139 (575)
....+..|... .|+ |.+.+.+..+ ..|+...+ -..-.+....| +.+.+.+.+....+....+...+.-
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~-----~~~~~~~~~llaA~aa~~~g-~~~~A~~~l~~a~~~~p~~~l~~~~ 157 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNAD-----HAAEPVLNLIKAAEAAQQRG-DEARANQHLEEAAELAGNDNILVEI 157 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCcCchHHHH
Confidence 34455555433 344 8888877666 34554333 33345556667 9999999999988765333334555
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHH---Hh
Q 008183 140 ALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA---AE 213 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~ 213 (575)
.....+...|+++.|...++.+.+ | +...+..+...|.+.|++++|.+++..+.+.++.+.......-..+. ..
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999875 3 66678899999999999999999999999987543332212122222 22
Q ss_pred cccHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhh---HHHHHHHHHHcCChHH
Q 008183 214 LAAMEQCRVIHGHAVVSG---LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIA---WNAMMAGYAQQGDQST 286 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~---~~~li~~~~~~g~~~~ 286 (575)
.+..+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++.++ .||... +..........++.++
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 223333334555554432 124788999999999999999999999998666 455442 1222233345678889
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 008183 287 VLELFHLLEMRGFAPDE---YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 287 A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
+++.++...+. .|+. ....++...|.+.|++++|.+.|+.. ......|+...+..+...+.+.|+.++|.++++
T Consensus 318 ~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a-~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 318 LEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNV-AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh-HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999887765 3433 45667888899999999999999954 234567998889999999999999999999998
Q ss_pred hC
Q 008183 364 AM 365 (575)
Q Consensus 364 ~m 365 (575)
+.
T Consensus 395 ~~ 396 (409)
T TIGR00540 395 DS 396 (409)
T ss_pred HH
Confidence 64
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.35 E-value=2.5e-08 Score=99.26 Aligned_cols=387 Identities=9% Similarity=0.032 Sum_probs=305.9
Q ss_pred CCCCCCccHHHHHHHHHhhCC---CcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---H
Q 008183 10 QPQNTSTDPRIVHARALKSSQ---ADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---S 80 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a 80 (575)
...++....+.|..-++..|. .--.+|+.--+.|.+.+.++-|+.+|.... ..+...|......--..|. -
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 345677788888888888887 345688888999999999999999998765 4566778777665555555 6
Q ss_pred HHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHh
Q 008183 81 LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160 (575)
Q Consensus 81 ~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 160 (575)
..+|.+.... ++-....|-...+..-..| ++..++.++..+.+... .+..+|-+-+..-.....++.|+.+|.+
T Consensus 570 ~Allqkav~~----~pkae~lwlM~ake~w~ag-dv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 570 EALLQKAVEQ----CPKAEILWLMYAKEKWKAG-DVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHh----CCcchhHHHHHHHHHHhcC-CcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 6677777764 3444555555566666778 99999999999998874 4778899999999999999999999998
Q ss_pred cCC--CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHH-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchh
Q 008183 161 IRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY-CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVI 237 (575)
Q Consensus 161 m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 237 (575)
... ++...|.--+..-.-.++.++|++++++..+. -|+-. .|..+-..+-+.++++.|+..|..=.+. ++-.+.
T Consensus 644 ar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 644 ARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred HhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 764 67777877777777789999999999998773 56654 6677777888899999999888765554 345577
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhC-C-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENL-S-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 315 (575)
.|-.|...--+.|.+-.|..+++... . +.+...|-..|..=.+.|+.+.|..+..+..+. .+-+...|..-|....+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 88888888899999999999999732 2 567889999999999999999999998887765 45566777777766666
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
.++-......+.+ .+-|..+.-++..++-...++++|.+.|.+. ...|| -.+|.-+..-+.++|.-+.-.++
T Consensus 800 ~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 800 PQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred cccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 6664444444332 3567777788888899999999999999987 56665 78999999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHH
Q 008183 394 GKRLIDINPYDDSAYVIVA 412 (575)
Q Consensus 394 ~~~~~~~~p~~~~~~~~l~ 412 (575)
+.+....+|.....|....
T Consensus 874 ~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 874 LKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHhccCCCCCcHHHHHh
Confidence 9999999998776666543
No 44
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=2.7e-12 Score=87.19 Aligned_cols=50 Identities=28% Similarity=0.746 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008183 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 315 (575)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 45
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=3.5e-12 Score=86.64 Aligned_cols=50 Identities=20% Similarity=0.493 Sum_probs=47.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh
Q 008183 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213 (575)
Q Consensus 164 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 213 (575)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=5.4e-10 Score=104.34 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=158.3
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
....+..+...|...|++++|.+.|++.+. +.+...+..+...|...|++++|.+.|++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 356677788888889999999998887443 34566778888888899999999999988887643 355667777888
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMA 390 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 390 (575)
+...|++++|...+...............+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988533222223556777888899999999999999887 3344 467788888999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 391 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
...+++..+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988887778888899999999999999998887764
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.3e-08 Score=95.77 Aligned_cols=320 Identities=14% Similarity=0.076 Sum_probs=163.8
Q ss_pred CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCCChhhHH--HHHHH
Q 008183 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLA--SLFKT 108 (575)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p~~~t~~--~ll~~ 108 (575)
.|++.+-..--.+-+.|....|...|-.....-+.-|.+-+.-..-.. -++........ .+.|..-+. .+..+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit-~~e~~~~l~~~----l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT-DIEILSILVVG----LPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc-hHHHHHHHHhc----CcccchHHHHHHHHHH
Confidence 454444444445556777888888887665433344443332211100 22222222221 111111111 12344
Q ss_pred HhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCC------CcchHHHHHHHHHhCCCc
Q 008183 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER------DVVCYGAMIVGFAQNSRL 182 (575)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~ 182 (575)
+-... ..+.+.+=.......|++.+...-+-...+.-...|+++|+.+|+++... |..+|+.++ |+++.+.
T Consensus 237 ~~el~-q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 237 YQELH-QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHH-HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 44455 66666666677777777766666555555555667777777777777652 445666555 3333222
Q ss_pred hHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhh
Q 008183 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN 262 (575)
Q Consensus 183 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 262 (575)
. +.++.+-...=-+--+.|..++.+-|+-.++.++|...|+..++.+ +.....|+.+..-|....+-..|.+.++.+
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 1111111110011222345555555555566666666666666554 334555555556666666666666666554
Q ss_pred CC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh
Q 008183 263 LS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340 (575)
Q Consensus 263 ~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 340 (575)
+. +.|-..|-.|..+|.-.+.+.=|+-.|++.... -+-|...+.+|..+|.+.++.++|...|.... ..| ..+..
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai-~~~-dte~~ 467 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAI-LLG-DTEGS 467 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHH-hcc-ccchH
Confidence 33 455556666666666666666666666655553 12244555556666666666666666655542 211 12335
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMA 364 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~ 364 (575)
.+..|.++|-+.++.++|...|++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555566666666666666555443
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=5.3e-11 Score=121.52 Aligned_cols=264 Identities=13% Similarity=0.129 Sum_probs=189.5
Q ss_pred HHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC
Q 008183 187 SVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL 266 (575)
Q Consensus 187 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 266 (575)
.++-.+...|+.||.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CC
Confidence 45667888999999999999999999999999998 9999988888889999999999988888877654 67
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 008183 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI 346 (575)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 346 (575)
...+|.+|..+|.++|+... |+...+ -...+...++..|....-..++-.+.-..+.-||.. ..+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~i 146 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAI 146 (1088)
T ss_pred chhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHH
Confidence 78899999999999999876 332222 222345555666666666666654432334445543 355
Q ss_pred HHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhCCCchHHH
Q 008183 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDDSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~ 425 (575)
......|.++.+.+++..+|...-..+...++.-+... ....+++........ ..++.+|..+...-..+|+.+.|.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 55667888999999998886332111222234433332 233344444333322 357789999999999999999999
Q ss_pred HHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCCccc
Q 008183 426 EVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGYVPVWDEML 491 (575)
Q Consensus 426 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~ 491 (575)
.++.+|+++|+..++...|. ++.|....+ .++.+.+-|++.|+.|+..|.-
T Consensus 225 ~ll~emke~gfpir~HyFwp--------Ll~g~~~~q-------~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWP--------LLLGINAAQ-------VFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHHcCCCcccccchh--------hhhcCccch-------HHHHHHHHHHHhcCCCCcchhH
Confidence 99999999999988888886 334422222 3445678899999999977643
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.2e-08 Score=93.95 Aligned_cols=253 Identities=13% Similarity=0.069 Sum_probs=177.6
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHccCCH
Q 008183 175 GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL--DRNVIVGTGLIDGYGKAGIV 252 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~ 252 (575)
+|-...+.++++.-.+.....|+.-+...-+-...+.-...++++|..+|+.+.+... --|..+|+.++-.--.+..+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444445555555555555555444443333333344455666677777766666520 01344555444332222222
Q ss_pred H-HHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 253 S-DARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 253 ~-~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
. -|..+++ +.+--..|.-.+.+-|+-.++.++|...|++..+.+.. ....++.+..-|....+...|.+-++...
T Consensus 316 s~LA~~v~~--idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv- 391 (559)
T KOG1155|consen 316 SYLAQNVSN--IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV- 391 (559)
T ss_pred HHHHHHHHH--hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH-
Confidence 1 1222222 22223344555566678888999999999999885432 34567777788899999999999998774
Q ss_pred hcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhH
Q 008183 332 RYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408 (575)
Q Consensus 332 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 408 (575)
.+.| |-..|-.|..+|.-.+.+.-|+-.|++. .++| |...|.+|...|.+.++.++|++.|.++...+..+..++
T Consensus 392 --di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 --DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred --hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 4455 5788999999999999999999999988 5677 699999999999999999999999999999887788899
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 409 VIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
..|.+.|-+.++.++|...+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999887765
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=4.9e-09 Score=105.68 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-----C-CCCch-hHHHHHHHHHHccCCHHHHHHHHhhhCC-------CC-
Q 008183 202 YCVSGALRAAAELAAMEQCRVIHGHAVVS-----G-LDRNV-IVGTGLIDGYGKAGIVSDARRVFDENLS-------VL- 266 (575)
Q Consensus 202 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~- 266 (575)
.|+..+...|...|+++.|.+++++.++. | ..|.+ ...+.+...|...+++++|..+|++++. ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666888899999999999988887664 2 12222 2334467788999999999999887554 11
Q ss_pred --ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--C
Q 008183 267 --NSIAWNAMMAGYAQQGDQSTVLELFHLLEM-----RGFA-PDE-YSFLAVLTALCNAGLAGESEKWIERMKVRYK--L 335 (575)
Q Consensus 267 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 335 (575)
-..+++.|..+|.+.|++++|...++...+ .|.. |.. .-++.+...|+..+.+++|..++......+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 235677788889999999998888876543 1222 232 2366677778889999999999886644332 2
Q ss_pred CCC----hhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh--
Q 008183 336 EPG----LEHYTCLISAMGRAGRLEDAERIAMAM---------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLID-- 399 (575)
Q Consensus 336 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 399 (575)
.++ ..+++.|...|-..|++++|++++++. +..+. ...++.|..+|.+.++.++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 478999999999999999999999877 12232 56678899999999999999998887764
Q ss_pred --cCCCC---chhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 400 --INPYD---DSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 400 --~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.+|.. ..+|..|+..|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44544 3478899999999999999999988775
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.24 E-value=5.5e-08 Score=100.54 Aligned_cols=343 Identities=12% Similarity=0.030 Sum_probs=231.4
Q ss_pred CCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHH
Q 008183 46 SNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFG 119 (575)
Q Consensus 46 ~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a 119 (575)
.|++++|.+++.++. +.+...|-+|-..|-+.|+ ++..+-..... .+-|..-|..+-.-....| .+..|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL----~p~d~e~W~~ladls~~~~-~i~qA 226 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL----NPKDYELWKRLADLSEQLG-NINQA 226 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHhcc-cHHHH
Confidence 499999999998875 4567789999999999998 44443333322 2335567777777777788 89999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCc-c-------hHHHHHHHHHhCCCchHHHHHHHH
Q 008183 120 LSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV-V-------CYGAMIVGFAQNSRLVDSLSVFAD 191 (575)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-~-------~~~~li~~~~~~g~~~~A~~~~~~ 191 (575)
.-.+..+++... ++....---..+|-+.|+...|...|.++-+.+. + .--.++..|...++-+.|++.+..
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998873 3444444456788899999999998888765322 1 112245667777777888888888
Q ss_pred hHHC-CCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---------------------------CCCCchhH-HHHH
Q 008183 192 MRSS-DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS---------------------------GLDRNVIV-GTGL 242 (575)
Q Consensus 192 m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~l 242 (575)
.... +-..+..+++.++..+.+....+.+.......... ++.++..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7652 22334456667777777777777776666555541 22333333 2222
Q ss_pred HHHHHccCCHHHHHHHHhhhCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008183 243 IDGYGKAGIVSDARRVFDENLS----VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 318 (575)
--.-.+.+...+++.-|-. .. .-++..|.-+..+|.+.|++.+|+.+|..+.....--+...|..+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 2222344455555544432 11 234556777888999999999999999999877555567788888888899999
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHHcCC
Q 008183 319 AGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMP-----------FEPDAAVWRALLSFSAIHGK 386 (575)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~p~~~~~~~ll~~~~~~g~ 386 (575)
.++|.+.|+... ...|+ ...--.|...|-+.|+.++|.+.++.+- ..|+...--.....+.+.|+
T Consensus 465 ~e~A~e~y~kvl---~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 465 YEEAIEFYEKVL---ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHHH---hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 999999998774 34565 4555677788889999999999998862 22333333444455667777
Q ss_pred hHHHHHHHHHHH
Q 008183 387 ADMASKMGKRLI 398 (575)
Q Consensus 387 ~~~a~~~~~~~~ 398 (575)
.++-......++
T Consensus 542 ~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 542 REEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHH
Confidence 766555444443
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.4e-07 Score=89.14 Aligned_cols=366 Identities=11% Similarity=0.011 Sum_probs=241.2
Q ss_pred HHHHHHHhHcCCChHHHHHHHccCCCCC-hhhHHHHHHHHhcCch------------------HHHHHHHHhhCC-----
Q 008183 36 YNNLITNYSKSNLLSYSLRLFNHIPSPN-IVSWTALISAHSNSPL------------------SLNIFLSMLRHP----- 91 (575)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~------------------a~~~~~~m~~~~----- 91 (575)
--..+..|-..++-+.|.....+.|+.- ..--|.|+.-+-+.|. |+..+.-..+.+
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e 179 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE 179 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh
Confidence 3345666666788888888888887432 2223333333322221 222222222211
Q ss_pred -------CCCcCCChhhHHHHHHHHhhch-hhHHHHHHHHHHHH-hhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 008183 92 -------TLSFLPNQRTLASLFKTCASLS-HAFLFGLSLHSLSL-KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162 (575)
Q Consensus 92 -------~~~~~p~~~t~~~ll~~~~~~~-~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 162 (575)
...+.|+..+...-+++++..- .+-..+-+.+-.+. ..-++.|+.....+.+.|...|+.++|...|++..
T Consensus 180 ~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 180 INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 0013343344444444433321 02222233333332 23467788899999999999999999999999876
Q ss_pred CCCcchHHHH---HHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHH
Q 008183 163 ERDVVCYGAM---IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239 (575)
Q Consensus 163 ~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 239 (575)
.-|..+...| .-.+.+.|+++....+...+.... +-...-|..-+......++++.|..+-+..++.. +.+...+
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~al 337 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEAL 337 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHH
Confidence 5443332221 223457888888888877775431 1222333333444455677788877777776653 3344444
Q ss_pred HHHHHHHHccCCHHHHHHHHhhh--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-
Q 008183 240 TGLIDGYGKAGIVSDARRVFDEN--LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL-TALCN- 315 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~- 315 (575)
-.-..++...|+.++|.-.|+.+ +.+-+..+|.-|+.+|...|+..+|.-+-+...+. +..+..+...+- ..|..
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccC
Confidence 44457788889999999999873 33678999999999999999999999887766554 344555655442 33332
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
..--++|..+++.- ..+.|+ ....+.+...+...|+.+++..++++. ...||....+.|...+...+.+++|...
T Consensus 417 p~~rEKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 417 PRMREKAKKFAEKS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred chhHHHHHHHHHhh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 33457888888854 466788 677888899999999999999999887 6789999999999999999999999999
Q ss_pred HHHHHhcCCCCchh
Q 008183 394 GKRLIDINPYDDSA 407 (575)
Q Consensus 394 ~~~~~~~~p~~~~~ 407 (575)
|..++.++|.+..+
T Consensus 494 y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 494 YYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHhcCccchHH
Confidence 99999999988543
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.8e-08 Score=96.96 Aligned_cols=214 Identities=15% Similarity=0.114 Sum_probs=168.5
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHH
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELF 291 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~ 291 (575)
.|+.-.+.+-++..++.. +.+...|--+..+|....+-++..+.|+.+.. +.|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 467777788888888764 33333477777889999999999999987433 556777877777778888999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC
Q 008183 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD 370 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 370 (575)
++.++... -+...|..+--+..+.+.++++...|++.+.++ +.-.+.|+.....+...+++++|.+.|+.. .++|+
T Consensus 418 ~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 99887532 256677777777788999999999999997653 334789999999999999999999999876 34443
Q ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 371 ---------AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 371 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+..-..++-.-. .+++..|..+++++++++|....+|..|..+-...|+.++|.++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222222332222 3899999999999999999999999999999999999999999998654
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=6.8e-08 Score=91.20 Aligned_cols=274 Identities=16% Similarity=0.126 Sum_probs=127.9
Q ss_pred CCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHH
Q 008183 148 FRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 148 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
.|++..|+++..+-.+ .....|-.-+.+--+.|+.+.+-+++.+.-+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555544332 1222333333344445555555555555544322333334444444445555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCC-----------hhhHHHHHHHHHHcCChHHHHHHHHH
Q 008183 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN-----------SIAWNAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~ 293 (575)
.++.+.+ +.++.+.......|.+.|++.....+... +.+.. ..+|+.++.-....+..+.-...|+.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~-L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPK-LRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHH-HHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555443 34445555555555555555555555554 33111 12444444444444444433334444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC----CCCC
Q 008183 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM----PFEP 369 (575)
Q Consensus 294 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p 369 (575)
...+ .+-+...-.+++.-+.+.|+.++|.++..+. -+.+..|+.. .+ -...+-++.+.-.+..+.- |..
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~-Lk~~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~- 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA-LKRQWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPED- 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH-HHhccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCC-
Confidence 4322 2333333344445555556666666655555 2334444311 11 1222333333322222222 222
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+..+.+|...|.+++.+.+|...++..++..| +...|..+..++.+.|+.++|.+++++-.
T Consensus 328 -p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 -PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred -hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34555555666666666666666665555555 33455666666666666666666655544
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.20 E-value=2.1e-09 Score=110.13 Aligned_cols=256 Identities=14% Similarity=0.082 Sum_probs=170.2
Q ss_pred HHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhc
Q 008183 82 NIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEI 161 (575)
Q Consensus 82 ~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 161 (575)
.++..|...| +.||..||.+++..|+..| +.+.|- ++..|.-..++.+..+++.++....+.++.+.+.
T Consensus 11 nfla~~e~~g---i~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISG---ILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhc---CCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------
Confidence 5667788888 9999999999999999999 999888 9999988888888899999999999999888776
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHH-hH-------HCCCCcCHHHHHHHHHHHHhc-------ccHHHHHHHHHH
Q 008183 162 RERDVVCYGAMIVGFAQNSRLVDSLSVFAD-MR-------SSDVGSTMYCVSGALRAAAEL-------AAMEQCRVIHGH 226 (575)
Q Consensus 162 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~-------~~~~~a~~~~~~ 226 (575)
+|...+|+.|..+|.+.||... ++..++ |. ..|+.....-|-..+++|-.. -....-+.+++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 7788899999999999998765 332222 21 123222222222222222110 001111122222
Q ss_pred HHHhCC-CCchhHHHH---HHHHHHc-cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008183 227 AVVSGL-DRNVIVGTG---LIDGYGK-AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301 (575)
Q Consensus 227 ~~~~g~-~~~~~~~~~---li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 301 (575)
.++.+. .|...-++. ++.-... ...+++-...-+...+.++..+|.+.+..-.-+|+.+.|..++.+|.+.|++.
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 333221 111110110 1111111 12233333333442225888899999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 008183 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354 (575)
Q Consensus 302 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 354 (575)
+..-|-.|+-+ .++..-+..++..| ...|+.|+..|+.-.+-.+...|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgm-qe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGM-QEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHH-HHhcCCCCcchhHHHHHhhhcchh
Confidence 88888888855 78888888888877 667999999888877766666444
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=2.7e-08 Score=93.79 Aligned_cols=278 Identities=13% Similarity=0.018 Sum_probs=223.7
Q ss_pred chhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCC----CcchHHHHHHHHHhCCCchHHHH
Q 008183 112 LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER----DVVCYGAMIVGFAQNSRLVDSLS 187 (575)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~ 187 (575)
.| ++..|+++.....+.+-.| ...|..-..+--+.|+.+.|-+++.+..++ +...+-+........|+++.|..
T Consensus 97 eG-~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EG-DFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cC-cHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 35 8999999998877776433 344555557777889999999999988764 44567777888899999999999
Q ss_pred HHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHccCCHHHHHHHHh
Q 008183 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV-------IVGTGLIDGYGKAGIVSDARRVFD 260 (575)
Q Consensus 188 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 260 (575)
-..++.+.+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+++.+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998764 335567788899999999999999999999999876654 466777776666666676667777
Q ss_pred hhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 008183 261 ENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337 (575)
Q Consensus 261 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 337 (575)
. .+ +.+...--+++.-+.+.|+.++|.++.++-.+.+..|+..+ +-.+.+.++.+.-.+..++-...++-.|
T Consensus 254 ~-~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 N-QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred h-ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 7 66 34566677788889999999999999999999888877222 2345677888777777777766665555
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
..+.+|...|.+.+.+.+|...|+.. +..|+..+|+-+..++.+.|+..+|.+..++..-
T Consensus 329 --~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 --LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred --hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 67888999999999999999999976 7889999999999999999999999999998874
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=1.2e-08 Score=107.71 Aligned_cols=259 Identities=8% Similarity=-0.072 Sum_probs=184.2
Q ss_pred CcchHHHHHHHHHh-----CCCchHHHHHHHHhHHCCCCcCH-HHHHHHHHHHH---------hcccHHHHHHHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQ-----NSRLVDSLSVFADMRSSDVGSTM-YCVSGALRAAA---------ELAAMEQCRVIHGHAVV 229 (575)
Q Consensus 165 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 229 (575)
+...|...+.+-.. .++.++|+++|++..+. .|+. ..+..+..++. ..+++++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666666322 13467899999998764 5654 34444444433 22457899999999988
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008183 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL 307 (575)
Q Consensus 230 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 307 (575)
.. +.+...+..+..++...|++++|...|++++. +.+...|..+...+...|++++|+..+++..+....+ ...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHH
Confidence 75 55778888888999999999999999998655 4456788889999999999999999999998864332 22333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc
Q 008183 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIH 384 (575)
Q Consensus 308 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 384 (575)
.++..+...|++++|...+++..... .|+ ...+..+...|...|++++|...++++ +..|+ ...++.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 34445667899999999998874331 354 455777888899999999999999887 44555 44455566666777
Q ss_pred CChHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 385 GKADMASKMGKRLIDIN---PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 385 g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
| +.|...++++.+.. +.++.. +...|.-.|+-+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 47777777776533 434332 55667777777777666 7777654
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.9e-07 Score=85.57 Aligned_cols=130 Identities=12% Similarity=0.106 Sum_probs=58.6
Q ss_pred ccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 248 KAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
...+++.|..++.+++. +..+..--.+...+...|++++|.+.++...+.+..--..+...|..+|.+.|+.+++..+
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33444555555544333 2222222233344555555555555555555544333334455555666666666666666
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHH-HHhCCCCCCHHHHHHHHHH
Q 008183 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI-AMAMPFEPDAAVWRALLSF 380 (575)
Q Consensus 326 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~ 380 (575)
+..+... .++...-..+.+......-.+.|... .+.+.-+|+...+..|+..
T Consensus 272 L~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 272 LRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 6555221 23333333333333222233333322 2333345555555555543
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=3.4e-08 Score=92.11 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 247 (575)
.+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+....+.. +.+...+..+...|.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555544321 1122333344444444444444444444444432 223334444444444
Q ss_pred ccCCHHHHHHHHhhhCCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008183 248 KAGIVSDARRVFDENLSVL----NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 323 (575)
..|++++|.+.|++++..+ ....+..+...+...|++++|...|.+..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555444422211 11223333334444444444444444443321 112223333333444444444444
Q ss_pred HHHHHH
Q 008183 324 KWIERM 329 (575)
Q Consensus 324 ~~~~~m 329 (575)
.++++.
T Consensus 190 ~~~~~~ 195 (234)
T TIGR02521 190 AYLERY 195 (234)
T ss_pred HHHHHH
Confidence 444433
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=9.4e-08 Score=87.58 Aligned_cols=302 Identities=13% Similarity=0.065 Sum_probs=203.0
Q ss_pred CCChHHHHHHHHhcCCCCcchH---HHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH---HHHHHHHHHHHhcccHHHHH
Q 008183 148 FRSPDNAKKVFDEIRERDVVCY---GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM---YCVSGALRAAAELAAMEQCR 221 (575)
Q Consensus 148 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~ 221 (575)
..+.++|.++|-+|.+-|..++ -+|-+-|-+.|..+.|+++-+.+.++.--+.. ...-.+..-|-..|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678888898888887665554 35677788889999999988887664211111 12334555667788889999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhH--------HHHHHHHHHcCChHHHHHHHHH
Q 008183 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW--------NAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~li~~~~~~g~~~~A~~l~~~ 293 (575)
.+|..+.+.| ..-.....-|+..|-+..+|++|.++-++ +.+.+...| --+...+....+.+.|..++.+
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~-L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAER-LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9998888754 33455667788899999999999888876 443333333 3344455567788999999988
Q ss_pred HHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH
Q 008183 294 LEMRGFAPDEYSFL-AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDA 371 (575)
Q Consensus 294 m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 371 (575)
..+.. |+.+--+ .+-......|+++.|.+.++... +.+..--..+...|..+|...|+.++...++.++ ...+..
T Consensus 206 Alqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~-eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVL-EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 87753 3333322 34456778899999999999874 3332222577788899999999999999988876 344444
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH---hCCCchHHHHHHHHHhhCCCccCCceeEEEEC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS---GVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVK 448 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 448 (575)
..-..+..--....-.+.|...+.+-+...|. ...+..|++.-. ..|++.+...+++.|....++..|......-+
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CG 361 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCG 361 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccC
Confidence 44444544444555577788887777777774 445555665543 34567788888888887766666554433222
Q ss_pred CEEEEEE
Q 008183 449 GKVHVFL 455 (575)
Q Consensus 449 ~~~~~~~ 455 (575)
=..|.+.
T Consensus 362 F~a~~l~ 368 (389)
T COG2956 362 FTAHTLY 368 (389)
T ss_pred Ccceeee
Confidence 2334443
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=2.2e-08 Score=101.10 Aligned_cols=193 Identities=14% Similarity=0.125 Sum_probs=135.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHh-----C--CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC---------CCChh-
Q 008183 207 ALRAAAELAAMEQCRVIHGHAVVS-----G--LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS---------VLNSI- 269 (575)
Q Consensus 207 ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~- 269 (575)
+...|...+.+++|..+|..++.. | .+.-..+++.|..+|.+.|++++|...++.++. .+.+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555566666666666655432 2 111234556666778888888888877776544 12232
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----C-CCC
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMR---GFAPD----EYSFLAVLTALCNAGLAGESEKWIERMKVRY----K-LEP 337 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p 337 (575)
..+.++..+...+++++|..+++...+. -+.++ ..+++.|...|...|++++|.++|++..... + ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3556677788889999999888765432 12233 3578889999999999999999998886543 1 122
Q ss_pred C-hhHHHHHHHHHhccCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 338 G-LEHYTCLISAMGRAGRLEDAERIAMAM--------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 338 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
. ...++.|...|.+.++.++|.++|.+. +-.|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 467788888999999999998888766 24555 67899999999999999999999988773
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.3e-08 Score=93.10 Aligned_cols=230 Identities=13% Similarity=0.032 Sum_probs=175.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 008183 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249 (575)
Q Consensus 170 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 249 (575)
+-|-.+|.+.|.+.+|.+.|+.-.+. .|-..||..+-++|.+..+++.|..++.+-++. ++.|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56888999999999999999988775 677778888999999999999999999888775 466666666777888888
Q ss_pred CCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008183 250 GIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327 (575)
Q Consensus 250 g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 327 (575)
++.++|.++++..++ +.++.+..++..+|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+.+|-+..-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 899999999987444 456666777778888889999999999999988876 66777777777777777777776666
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
.... -.-+.++|- ..|-.|-......||+..|.+.|+-.+..+|++..+
T Consensus 383 RAls-------------------tat~~~~aa------------DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALS-------------------TATQPGQAA------------DVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHh-------------------hccCcchhh------------hhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 5421 122222232 234444444455678888888888888888888888
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 408 YVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
++.|.-.-.+.|++++|..++......
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888888888888888888888776654
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=3.3e-08 Score=104.35 Aligned_cols=228 Identities=14% Similarity=0.043 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------ccCCHHHHHHHHhhhCC-
Q 008183 200 TMYCVSGALRAAAE-----LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG---------KAGIVSDARRVFDENLS- 264 (575)
Q Consensus 200 ~~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~- 264 (575)
+...|...+.+-.. .+++++|...+++.++.. +.+...+..+..+|. ..+++++|...+++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555566655322 245788999999998763 334555666655544 23458899999998665
Q ss_pred -CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-hHH
Q 008183 265 -VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL-EHY 342 (575)
Q Consensus 265 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~ 342 (575)
+.+...|..+...+...|++++|+..|++..+.+ +.+...+..+..++...|++++|...+++.. .+.|+. ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhH
Confidence 5577888888889999999999999999998864 2245677778888999999999999999884 345653 233
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC--CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 008183 343 TCLISAMGRAGRLEDAERIAMAMP--FEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 419 (575)
..+...+...|++++|...+++.- ..|+ +..+..+..++...|+.++|...+.++....|.+......+...|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 344445667899999999998872 2354 5567778888889999999999999988887877777788888888888
Q ss_pred CchHHHHHHHHHhhC
Q 008183 420 RWDEVAEVRKVMKDR 434 (575)
Q Consensus 420 ~~~~a~~~~~~m~~~ 434 (575)
+.|...++.+.+.
T Consensus 490 --~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 --ERALPTIREFLES 502 (553)
T ss_pred --HHHHHHHHHHHHH
Confidence 4888877777653
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=2.5e-07 Score=88.28 Aligned_cols=345 Identities=11% Similarity=0.076 Sum_probs=194.8
Q ss_pred HHHHHHHHhhCCCCCcCCChhhHHHHH-HHHhhchhhHHHHHHHHHHHHhhCCCCchh----HHHHHHHHHHhCCChHHH
Q 008183 80 SLNIFLSMLRHPTLSFLPNQRTLASLF-KTCASLSHAFLFGLSLHSLSLKLSLHDKPF----CGSALVHFYSRFRSPDNA 154 (575)
Q Consensus 80 a~~~~~~m~~~~~~~~~p~~~t~~~ll-~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A 154 (575)
|+..|+-+.+.. ..||.-.+..-+ ..+.+.+ .+..|.++++..+..-...+.. +.+.+--.+.+.|++++|
T Consensus 220 alntyeiivknk---mf~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 220 ALNTYEIIVKNK---MFPNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred Hhhhhhhhhccc---ccCCCceeeeeecceeeehh-hHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 888888888776 777765433222 3345556 8889999998888765443333 334444557789999999
Q ss_pred HHHHHhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC------------cCHHHHHHHHH-----------
Q 008183 155 KKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG------------STMYCVSGALR----------- 209 (575)
Q Consensus 155 ~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------p~~~t~~~ll~----------- 209 (575)
...|+...+ ||..+--.|+-++..-|+-++..+.|.+|..-... |+....+..+.
T Consensus 296 insfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ 375 (840)
T KOG2003|consen 296 INSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN 375 (840)
T ss_pred HhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence 999998654 66665444555556678899999999998653322 22222222111
Q ss_pred ----------------------------------------------------HHHhcccHHHHHHHHHHHHHhCCCCchh
Q 008183 210 ----------------------------------------------------AAAELAAMEQCRVIHGHAVVSGLDRNVI 237 (575)
Q Consensus 210 ----------------------------------------------------~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 237 (575)
.+.+.|+++.|.+++.-..+..-..-..
T Consensus 376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~sa 455 (840)
T KOG2003|consen 376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASA 455 (840)
T ss_pred hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHH
Confidence 1112233333333333332221110000
Q ss_pred HHHHHHHH------------------------------------HHccCCHHHHHHHHhhhCCCCChhhHHHH---HHHH
Q 008183 238 VGTGLIDG------------------------------------YGKAGIVSDARRVFDENLSVLNSIAWNAM---MAGY 278 (575)
Q Consensus 238 ~~~~li~~------------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~l---i~~~ 278 (575)
..|.|-.. -...|++++|.+.+++++. .|...-.+| .-.+
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~-ndasc~ealfniglt~ 534 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN-NDASCTEALFNIGLTA 534 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc-CchHHHHHHHHhcccH
Confidence 00000000 0012333333333333111 111111111 1123
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHH
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 357 (575)
-..|+.++|++.|-++... +..+...+..+.+.|....+..+|.+++.+. ..+.| |.....-|.+.|-+.|+-..
T Consensus 535 e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~---~slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA---NSLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred HHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh---cccCCCCHHHHHHHHHHhhcccchhh
Confidence 3445555555555444322 2224445555555555556666666665433 23444 46777888888888888888
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHH-HHHHhCCCchHHHHHHHHHhhC
Q 008183 358 AERIAMAM-PF-EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA-NVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 358 A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
|++..-+- .. .-+..+..-|..-|....-++.+...|+++.-+.| +..-|..++ .++.+.|++..|..+++....+
T Consensus 611 afq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 611 AFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 88765443 32 33566666677777777778888999888877777 445566555 5667889999999999988654
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.2e-07 Score=90.27 Aligned_cols=262 Identities=13% Similarity=0.062 Sum_probs=201.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+....-.-..-+...+++.+.+++++...+. .+++...+..-|.++...|+..+-..+=..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 4455555566677788888888888888764 3455555666666777777766666665566654 4667888999988
Q ss_pred HHHccCCHHHHHHHHhhh--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008183 245 GYGKAGIVSDARRVFDEN--LSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 322 (575)
-|.-.|+.++|++.|.+. |.+.=...|-.....|+-.|..++|+..+....+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 888889999999999872 33445578999999999999999999988777654 111222233344557889999999
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCChHHHHH
Q 008183 323 EKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMP--------FEP-DAAVWRALLSFSAIHGKADMASK 392 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~ 392 (575)
.++|.+. .++.|+ +...+-+.-..-..+.+.+|..+|+..- -.+ -..+++.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A---~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQA---LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHH---HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999865 366675 6667777766777889999999987761 112 35578889999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.+++.+.+.|.+..+|.++.-.|...|+++.|...|.+-.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=1.5e-06 Score=88.70 Aligned_cols=391 Identities=16% Similarity=0.169 Sum_probs=250.4
Q ss_pred CcccHHHHHHHHhHcCCChHHHHHHHccCCC---CChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCC-ChhhHH
Q 008183 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLP-NQRTLA 103 (575)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p-~~~t~~ 103 (575)
.++.+|..|.-+...+|+++.+-+.|++... .....|+.+-..|+-.|. |+.+++.-.... ..| |...+-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~---~~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS---EQPSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc---cCCCcchHHH
Confidence 7999999999999999999999999997652 345578888888887777 888888766543 224 444454
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHhh--CC--CCchhHHHHHHHHHHhC-----------CChHHHHHHHHhcCC-----
Q 008183 104 SLFKTCASLSHAFLFGLSLHSLSLKL--SL--HDKPFCGSALVHFYSRF-----------RSPDNAKKVFDEIRE----- 163 (575)
Q Consensus 104 ~ll~~~~~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~f~~m~~----- 163 (575)
..-+.|.+.-+..+++...-..++.. +. ...+..|-.+--+|+.. ....++.+.+++..+
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556665443666666655555552 11 12233444444444332 122456666666643
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 164 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
|++.-| +.--|+-.++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+..... ++.|-.....-+
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKI 554 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhh
Confidence 233333 33346677889999999999988877788888888888888899999999888876543 111111111112
Q ss_pred HHHHccCCHHHHHHHHhhh-------------------------CC-----CCChh-hHHHHHHHHHHcCChHHHHHHHH
Q 008183 244 DGYGKAGIVSDARRVFDEN-------------------------LS-----VLNSI-AWNAMMAGYAQQGDQSTVLELFH 292 (575)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~-------------------------~~-----~~~~~-~~~~li~~~~~~g~~~~A~~l~~ 292 (575)
..-...++.++|......+ +. ..|.. ++.-+ .+.+. -+...+..-.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~- 631 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSEL- 631 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhccccc-
Confidence 2222244444443332221 10 01111 11111 11111 0000000000
Q ss_pred HHHHcCCC--CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHH
Q 008183 293 LLEMRGFA--PDE------YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 293 ~m~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
.|...-+. |+. ..+......+...+..++|...+.+.. ++.|- ...|......+...|..++|.+.|.
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 01111122 221 223445556777888889887777662 34454 5677777778888999999999887
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 364 AM-PFEPD-AAVWRALLSFSAIHGKADMASK--MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 364 ~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.. -+.|+ +.+..++...+.+.|+...|.. ++..+.+.+|.++.+|..|..++.+.|+.++|...|+...+
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 76 57786 7889999999999999888887 99999999999999999999999999999999999987654
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=1.9e-07 Score=90.26 Aligned_cols=219 Identities=12% Similarity=-0.013 Sum_probs=113.3
Q ss_pred hCCCchHHHHHHHHhHHCC-CCcC--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 008183 178 QNSRLVDSLSVFADMRSSD-VGST--MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254 (575)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 254 (575)
..+..+.++.-+.++.... ..|+ ...|......+...|+.++|...|...++.. +.+...++.+...|...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3455666666666665431 2222 2335555555666677777777776666653 3456666667777777777777
Q ss_pred HHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008183 255 ARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332 (575)
Q Consensus 255 A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 332 (575)
|.+.|+.++. +.+..+|..+...+...|++++|++.|+...+. .|+..........+...++.++|...+.+....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 7777766443 334556666666666677777777777666654 232221111111223445666666666543221
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHH--HHHHHhC-C----CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 333 YKLEPGLEHYTCLISAMGRAGRLEDA--ERIAMAM-P----FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
..|+...+ .+...+ .|+..++ .+.+.+- . +.| ...+|..+...+...|++++|...|+++++.+|++
T Consensus 195 --~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 --LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred --CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 12222211 222222 3333222 2222111 1 111 13456666666666666666666666666666543
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.2e-06 Score=83.08 Aligned_cols=218 Identities=14% Similarity=0.061 Sum_probs=174.9
Q ss_pred HhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH
Q 008183 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256 (575)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 256 (575)
.-.|+...|...|+...+....++.. |.-+...|....+.++..+.|....+.. +.++.+|..-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 44688999999999998865444442 7777788899999999999999999876 667888999999999999999999
Q ss_pred HHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008183 257 RVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK 334 (575)
Q Consensus 257 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 334 (575)
.-|++.+. +.++..|-.+-.+..+.+++++++..|++..+. ++--...|+.....+...++++.|.+.|+..+ .
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~ 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---E 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---h
Confidence 99998554 556677777777778899999999999999887 55566788888899999999999999999774 3
Q ss_pred CCCC---------hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 335 LEPG---------LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 335 ~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
++|+ ..+.-+++.. --.+++..|.+++++. .+.|- ...|.+|...-.+.|+.++|+++|++...+-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444 1112222222 2348999999999987 56664 7789999999999999999999999987654
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.94 E-value=1.6e-05 Score=79.67 Aligned_cols=384 Identities=13% Similarity=0.120 Sum_probs=235.2
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHHHhcCch-------------------------HHHHHH
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHSNSPL-------------------------SLNIFL 85 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~-------------------------a~~~~~ 85 (575)
..+|++|.+-|.+.|.++.|+.+|++.. .-.+.-++.+.++|++-.. .+.-|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 4699999999999999999999998753 2344445555555554433 222233
Q ss_pred HHhhCCCC--------CcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHHhCCCh
Q 008183 86 SMLRHPTL--------SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD------KPFCGSALVHFYSRFRSP 151 (575)
Q Consensus 86 ~m~~~~~~--------~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~ 151 (575)
.+...... --+-+..+|..-.+.+ .| +..+-...+..+++.- .| -...|-.+.+.|-..|++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~-~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EG-NAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cC-ChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcH
Confidence 32221100 0011222222222221 11 3445555666666542 11 124678889999999999
Q ss_pred HHHHHHHHhcCCCC-------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC----------c-------CHHHHHHH
Q 008183 152 DNAKKVFDEIRERD-------VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG----------S-------TMYCVSGA 207 (575)
Q Consensus 152 ~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~l 207 (575)
+.|+.+|++..+-+ ..+|..-...=.+..+++.|+++.++.....-. | +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 99999999987632 235666666667788899999988877532111 1 11234444
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCCh-hhHHHHHHHHHH---
Q 008183 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNS-IAWNAMMAGYAQ--- 280 (575)
Q Consensus 208 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~~li~~~~~--- 280 (575)
++---..|-++..+.+|+.+++..+.....+-| ....+-...-++++.+++++-++ .|++ ..||+-+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 444455678888999999998887543333222 23334456668999999998454 4554 467776665543
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChH
Q 008183 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL--CNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRLE 356 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~ 356 (575)
.-.++.|..+|++..+ |.+|...-+..|+-|- -+-|....|..++++... ++++. ...||..|.--...=-+.
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 3468999999999998 6777765555555443 235888899999998732 44444 467777775433222222
Q ss_pred HHHHHHHhC-CCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhcC-CC-CchhHHHHHHHHHhCCCchHH
Q 008183 357 DAERIAMAM-PFEPDAAV---WRALLSFSAIHGKADMASKMGKRLIDIN-PY-DDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 357 ~A~~~~~~m-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~a 424 (575)
....+|++. ..-||..+ .--....-.+.|..+.|..++....+.- |. ++..|...=..-.+.|+-+..
T Consensus 640 ~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ 713 (835)
T KOG2047|consen 640 RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTY 713 (835)
T ss_pred ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHH
Confidence 223333333 22344322 2233344567799999999999888865 43 444677877888888884433
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=5.5e-07 Score=87.05 Aligned_cols=91 Identities=4% Similarity=-0.240 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 248 (575)
|..+...|...|+.++|...|++..+.. +.+...|..+...+...|+++.|...++..++.. +.+...+..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444444455555555554444421 1123344444444445555555555554444432 2223344444444444
Q ss_pred cCCHHHHHHHHhh
Q 008183 249 AGIVSDARRVFDE 261 (575)
Q Consensus 249 ~g~~~~A~~~~~~ 261 (575)
.|++++|.+.|+.
T Consensus 145 ~g~~~eA~~~~~~ 157 (296)
T PRK11189 145 GGRYELAQDDLLA 157 (296)
T ss_pred CCCHHHHHHHHHH
Confidence 4555555554444
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.90 E-value=6.2e-05 Score=75.65 Aligned_cols=401 Identities=12% Similarity=0.086 Sum_probs=243.8
Q ss_pred cHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCC----------CChhhHHHHHHHHhcCch------H
Q 008183 17 DPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS----------PNIVSWTALISAHSNSPL------S 80 (575)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----------~~~~~~~~li~~~~~~g~------a 80 (575)
.+..++.+-++. ++..-+--|..+++.+++++|.+.+..... .+-..|+-+-.-.+++.+ .
T Consensus 156 ts~rvyrRYLk~---~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 156 TSIRVYRRYLKV---APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 444444444332 344456677888889999999998887752 344568877777777765 5
Q ss_pred HHHHHHHhhCCCCCcCCCh--hhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhC----------
Q 008183 81 LNIFLSMLRHPTLSFLPNQ--RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF---------- 148 (575)
Q Consensus 81 ~~~~~~m~~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---------- 148 (575)
-.+++.+.. ..||. +.|++|.+-|.+.| .++.|+.++++.+..-. ++.-++.+-+.|+..
T Consensus 233 daiiR~gi~-----rftDq~g~Lw~SLAdYYIr~g-~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 233 DAIIRGGIR-----RFTDQLGFLWCSLADYYIRSG-LFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred HHHHHhhcc-----cCcHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 566666655 45665 57889999999999 99999999999877643 233344444444432
Q ss_pred ------C------ChHHHHHHHHhcCCC---------------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC-
Q 008183 149 ------R------SPDNAKKVFDEIRER---------------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST- 200 (575)
Q Consensus 149 ------g------~~~~A~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 200 (575)
| +++-...-|+.+.++ ++..|..-+. ...|+..+-...|.+.... +.|-
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCccc
Confidence 1 223333444444321 3444544443 3457788888888888653 3332
Q ss_pred -----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHccCCHHHHHHHHhhhCCCC------
Q 008183 201 -----MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRN---VIVGTGLIDGYGKAGIVSDARRVFDENLSVL------ 266 (575)
Q Consensus 201 -----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------ 266 (575)
...|..+.+.|-..|+++.|+.+|++..+..++.- ..+|-.-.++-.+..+++.|.++.+.+...|
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 24577888888899999999999999887654432 4566666677777888889998887643321
Q ss_pred --------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------------------------------
Q 008183 267 --------------NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF--------------------------------- 299 (575)
Q Consensus 267 --------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------------------------- 299 (575)
+...|.-.+..--..|-++....+|+.+.+..+
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 112333333333334444444445544443322
Q ss_pred -CCCHH-HHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHHhccCChHHHHHHHHhC--CCCCC
Q 008183 300 -APDEY-SFLAVLTAL---CNAGLAGESEKWIERMKVRYKLEPGL--EHYTCLISAMGRAGRLEDAERIAMAM--PFEPD 370 (575)
Q Consensus 300 -~p~~~-t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~ 370 (575)
.|+.. .|+.-+.-+ .....++.|+.+|++.. + +.+|.. ..|-.....--+.|....|..++++. ++++.
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL-~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a 619 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL-D-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA 619 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH
Confidence 13321 122222221 22346788888888774 3 555542 22222222233457778888888887 33332
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--hHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 371 --AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS--AYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 371 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
...||..|.--...=-+..-..+++++++.-|++.. ...-..++-.+.|..+.|..++.--.+
T Consensus 620 ~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 620 QRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 456777776444433355567788888887665432 344566778899999999999875543
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.4e-07 Score=86.43 Aligned_cols=197 Identities=9% Similarity=0.035 Sum_probs=160.1
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL-AVLT 311 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~ 311 (575)
.|-.--+-+..+|.+.|.+.+|++.|+..+. .|-+.||..|-..|.+..++..|+.+|.+-.+. .|-.+||. .+..
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 3444446688999999999999999998666 678889999999999999999999999988774 56666654 4566
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM---PFEPDAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~ 388 (575)
.+...++.++|.++++...... ..+++...++...|.-.++++-|+.+++++ | .-++..|+.+.-.|.-.++++
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchh
Confidence 7778899999999999874332 234778888888999999999999999876 5 446788889988999999999
Q ss_pred HHHHHHHHHHhcC--CC-CchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 389 MASKMGKRLIDIN--PY-DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 389 ~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.++.-|+++.... |. ...+|..|.......|++.-|.+.|+.....+
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 9999999998744 32 33478889999999999999999988766543
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=4.1e-07 Score=79.77 Aligned_cols=162 Identities=16% Similarity=0.117 Sum_probs=134.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAM 349 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 349 (575)
...|.-+|.+.|+...|..-+++..+.. +-+..++..+...|.+.|..+.|.+-|+... .+.|+ ..+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 3446677888899999998888888763 2255678888888899999999999988764 45665 67788888888
Q ss_pred hccCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHH
Q 008183 350 GRAGRLEDAERIAMAMPFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 425 (575)
|..|++++|...|++.-..|+ ..+|..+.-...+.|+.+.|...+++.++.+|..+.+...+.+...+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999988732332 6788888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 008183 426 EVRKVMKDRRV 436 (575)
Q Consensus 426 ~~~~~m~~~~~ 436 (575)
..++....++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99998887665
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=3.7e-07 Score=87.03 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=90.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh---HHHHHHHHHhccCC
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE---HYTCLISAMGRAGR 354 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~ 354 (575)
+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|. + +..|.. ...+.+..+.-...
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~-~--~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ-Q--IDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH-C--CSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH-h--cCCcHHHHHHHHHHHHHHhCchh
Confidence 44556677776666432 244555556666777777777777777763 2 233321 12222322222346
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc-hHHHHHHHHH
Q 008183 355 LEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW-DEVAEVRKVM 431 (575)
Q Consensus 355 ~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 431 (575)
+.+|..+|+++ ...+++.+.+.+..++...|++++|++++.+..+.+|.++.+...++-+....|+. +.+.+.+.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 77787777777 33456777777777777888888888888887777777777777777777777776 5566777776
Q ss_pred hhC
Q 008183 432 KDR 434 (575)
Q Consensus 432 ~~~ 434 (575)
+..
T Consensus 263 ~~~ 265 (290)
T PF04733_consen 263 KQS 265 (290)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6.1e-06 Score=81.53 Aligned_cols=283 Identities=11% Similarity=-0.025 Sum_probs=194.5
Q ss_pred cCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHH
Q 008183 95 FLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGA 171 (575)
Q Consensus 95 ~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~ 171 (575)
..-|......-..-|.... ++.....+.+.+.+.. ++....+..=|..+...|+-.+-..+=.++.+ ...++|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c-~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGC-RFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcC-hHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 3445555556666666666 8888888888877764 45555555556666666665554444444443 25678888
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCcC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVGST-MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
+.--|.-.|+..+|.+.|.+... +.|. ...|.....+++..+.-++|...+..+-+.= +-.---+--+.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence 88888888888888888887643 2332 2357777778888888888887777665531 111111112333467778
Q ss_pred CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CC-CCHHHHHHHHHHHHhcCCHHHH
Q 008183 251 IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----G-FA-PDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 251 ~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~-p~~~t~~~ll~a~~~~g~~~~a 322 (575)
+++.|.+.|.+++. +.|....+-+.......+.+.+|..+|+..... + -. --..+++.|..+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 88888888877554 567777777777777778888888888776521 1 11 2456788888899999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 008183 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIH 384 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 384 (575)
...+++.... .+.+..++.++.-.|...|+++.|.+.|.+. .+.||-.+-..++..+...
T Consensus 475 I~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 475 IDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999877432 2345788888888899999999999999887 6889887777777766544
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=4.1e-06 Score=85.83 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-------------CCCCh--hHHHHHHHHHhc
Q 008183 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK-------------LEPGL--EHYTCLISAMGR 351 (575)
Q Consensus 287 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------------~~p~~--~~~~~li~~~~~ 351 (575)
+...+..+...|+++ +|+.|-..|......+-..+++..+..... -.|.. .++.-+...|-.
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 344555666777653 444444445544445555555554432210 12333 244556777888
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 008183 352 AGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 352 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
.|++++|++++++. ...|+ +..|..-...+...|++++|.+.++.+.++++.|-..-.-.+..+.++|++++|.+++.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888865 55675 66777777888888888888888888888888776666667778888888888888888
Q ss_pred HHhhCCC
Q 008183 430 VMKDRRV 436 (575)
Q Consensus 430 ~m~~~~~ 436 (575)
.....+.
T Consensus 287 ~Ftr~~~ 293 (517)
T PF12569_consen 287 LFTREDV 293 (517)
T ss_pred hhcCCCC
Confidence 8776655
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.75 E-value=1.1e-05 Score=82.85 Aligned_cols=281 Identities=10% Similarity=0.065 Sum_probs=152.8
Q ss_pred HHhCCChHHHHHHHHhcCC--CCcch-HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHH----h--cc
Q 008183 145 YSRFRSPDNAKKVFDEIRE--RDVVC-YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA----E--LA 215 (575)
Q Consensus 145 ~~~~g~~~~A~~~f~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~--~~ 215 (575)
+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+|..+... .|+...|-..+..+. . ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccc
Confidence 4556677777776665433 24333 334455666667777777777777664 355555444444443 1 12
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH-HHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA-RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL 294 (575)
Q Consensus 216 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 294 (575)
+.+....+++.+...- |.......+.-.+.....+... ...+..++.+.=+.+++.+-..|.......-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3455556666554431 2222222221111121222222 222222122222234455555555444444444444444
Q ss_pred HHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHH
Q 008183 295 EMR----G----------FAPDE--YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 295 ~~~----g----------~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 357 (575)
... | -.|.. .++.-+...|...|++++|.++.++.+. ..|+ +..|..-...|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 322 1 12333 2344455566778888888888886643 3566 6777777888888888888
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCC-------chhHHHHHHHHHhCCCchHHHH
Q 008183 358 AERIAMAMP-FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDIN--PYD-------DSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 358 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
|.+.++... +.+ |...-+-....+.+.|+.++|++++......+ |.. .....-.+.+|.+.|++..|.+
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888877762 333 55555666677778888888888877776544 211 1112345677888888888877
Q ss_pred HHHHHh
Q 008183 427 VRKVMK 432 (575)
Q Consensus 427 ~~~~m~ 432 (575)
-|..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 655443
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=3.4e-06 Score=74.17 Aligned_cols=195 Identities=15% Similarity=0.044 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc
Q 008183 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ 281 (575)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 281 (575)
..-+.-.|...|+...|+.-++..++.. +.+..++..+...|.+.|+.+.|.+-|+.++. +.+-...|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3334444444555555555555555443 33344444445555555555555555554333 33334444444444555
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHH
Q 008183 282 GDQSTVLELFHLLEMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAE 359 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 359 (575)
|++++|...|++......-| -..||..+.-+..+.|+.+.|..+|.+.. ...|+ ..+...+.....+.|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL---~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL---ELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH---HhCcCCChHHHHHHHHHHhcccchHHH
Confidence 55555555554444331111 12344444444444455555555544332 11232 233344444444444444444
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 360 RIAMAM--PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 360 ~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.+++.. ...++..+.-..|..-...||.+.+.+.-..+...-|
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 444443 1123333333333444444444444444444444434
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=3e-05 Score=77.63 Aligned_cols=293 Identities=11% Similarity=-0.064 Sum_probs=152.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC---CCcch---HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHH-HHHHHHHH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRE---RDVVC---YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY-CVSGALRA 210 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~ 210 (575)
+..+...+...|+.+++.+.+....+ ++... .......+...|++++|.+.+++..+. .|+.. .+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHH
Confidence 33444445455555555444443321 12111 112233455667777777777776654 23322 2221 112
Q ss_pred HHh----cccHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCC
Q 008183 211 AAE----LAAMEQCRVIHGHAVVSGLDRN-VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGD 283 (575)
Q Consensus 211 ~~~----~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 283 (575)
+.. .+..+.+.+.+.. ..+..|+ ......+...+...|++++|.+.+++.+. +.+...+..+...|...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 222 2333334443333 1111222 33334455667777788888777777444 3445566667777777888
Q ss_pred hHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHhccCChHH
Q 008183 284 QSTVLELFHLLEMRGF-APDE--YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY-T--CLISAMGRAGRLED 357 (575)
Q Consensus 284 ~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~ 357 (575)
+++|...+++...... .|+. ..+..+...+...|++++|..++++........+..... + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 8888887777665422 1222 234456666777788888888887663211111111111 1 22333333443333
Q ss_pred HHHH---HHhC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-C---C-----CchhHHHHHHHHHhCCCc
Q 008183 358 AERI---AMAM-PFEP---DAAVWRALLSFSAIHGKADMASKMGKRLIDIN-P---Y-----DDSAYVIVANVLSGVGRW 421 (575)
Q Consensus 358 A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~ 421 (575)
+.++ ...- +..| ..........++...|+.+.|..+++.+.... . . .........-++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 3322 1111 1001 12222345566677888888888888876522 1 1 122344555667899999
Q ss_pred hHHHHHHHHHhhCC
Q 008183 422 DEVAEVRKVMKDRR 435 (575)
Q Consensus 422 ~~a~~~~~~m~~~~ 435 (575)
++|.+.+.......
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988776543
No 80
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=8.2e-05 Score=78.27 Aligned_cols=242 Identities=10% Similarity=0.068 Sum_probs=168.7
Q ss_pred HHHHHHHHHhhCC---CcccHHHHHHHHhHcCCChHHHHHHHccCC-CCChhh-----HHHHHHHHhcCch--HHHHHHH
Q 008183 18 PRIVHARALKSSQ---ADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SPNIVS-----WTALISAHSNSPL--SLNIFLS 86 (575)
Q Consensus 18 ~~~~~~~~~~~g~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~~~~-----~~~li~~~~~~g~--a~~~~~~ 86 (575)
-+++.+++++.++ .|+.--...+.++...+-+.+-.++++++. .|++++ -|.||-.-.+... ..+..++
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~r 1045 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHH
Confidence 4778888888886 677777888899999999999999998875 454444 4455554455544 6666666
Q ss_pred HhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCc
Q 008183 87 MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166 (575)
Q Consensus 87 m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 166 (575)
+-... .|+. ...+...+ -.++|..+|... ..+....+.||+ .-++++.|.+.-+...+|
T Consensus 1046 LdnyD----a~~i------a~iai~~~-LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p-- 1104 (1666)
T KOG0985|consen 1046 LDNYD----APDI------AEIAIENQ-LYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP-- 1104 (1666)
T ss_pred hccCC----chhH------HHHHhhhh-HHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--
Confidence 55432 2332 22334444 667777776653 445555555654 457788888887776654
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 246 (575)
..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++....+..-+|. +-+.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHH
Confidence 57999999999999999999888654 4667899999999999999998888888877765554 457899999
Q ss_pred HccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 008183 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292 (575)
Q Consensus 247 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 292 (575)
++.+++.+-+++... ||+.....+..-|...|.++.|.-+|.
T Consensus 1177 Akt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 999999888777544 454444455555555555555554443
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=0.00042 Score=69.26 Aligned_cols=396 Identities=10% Similarity=0.065 Sum_probs=214.7
Q ss_pred CCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHH--HHHHHhcCch-----HHHHHHH
Q 008183 14 TSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTA--LISAHSNSPL-----SLNIFLS 86 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--li~~~~~~g~-----a~~~~~~ 86 (575)
..+.+.+.-..++..+..++...-.=+-.....+++++|+++.+.-... .++|. +=.+|+.... |+..+.
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence 3344555555555555433333333344556667777777665543311 11222 2344443322 666655
Q ss_pred HhhCCCCCcCC-ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHHhCCChHHHHHHHHhcCCC
Q 008183 87 MLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHD-KPFCGSALVHFYSRFRSPDNAKKVFDEIRER 164 (575)
Q Consensus 87 m~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 164 (575)
+ ..+ |..+...--..|.+.+ +++++..++..+.+.+.+. +...-..++..-.. -.+. +.+..+..
T Consensus 104 ----~---~~~~~~~ll~L~AQvlYrl~-~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 104 ----G---LDRLDDKLLELRAQVLYRLE-RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQSVPEV 170 (652)
T ss_pred ----c---ccccchHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHhccCC
Confidence 2 233 2335555556788888 8999999998888776432 22222222221111 1111 34444443
Q ss_pred CcchHHH---HHHHHHhCCCchHHHHHHHHhHHCC-------CCcCH------H-HHHHHHHHHHhcccHHHHHHHHHHH
Q 008183 165 DVVCYGA---MIVGFAQNSRLVDSLSVFADMRSSD-------VGSTM------Y-CVSGALRAAAELAAMEQCRVIHGHA 227 (575)
Q Consensus 165 ~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~------~-t~~~ll~~~~~~~~~~~a~~~~~~~ 227 (575)
...+|.. ....+...|++.+|+++++.....+ -.-+. . .-.-+.-++-..|+.++|..++...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3334333 2345667788888888888772211 00111 1 1112333445678888888888888
Q ss_pred HHhCCCCch----hHHHHHHHHHHcc---------------------------------------------CCHHHHHHH
Q 008183 228 VVSGLDRNV----IVGTGLIDGYGKA---------------------------------------------GIVSDARRV 258 (575)
Q Consensus 228 ~~~g~~~~~----~~~~~li~~~~~~---------------------------------------------g~~~~A~~~ 258 (575)
++.. ++|. ...|.|+.+-.-. +.-+.+.++
T Consensus 251 i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7765 3333 1222232221111 111122222
Q ss_pred HhhhCCCC-ChhhHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------
Q 008183 259 FDENLSVL-NSIAWNAMMAGY--AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE-------- 327 (575)
Q Consensus 259 ~~~~~~~~-~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~-------- 327 (575)
-.. ++.. ....+.+++... ++...+.+|.+++...-+....-..+.....+......|+++.|.+++.
T Consensus 330 ~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 330 SAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 222 2111 122333333332 2223466777777766554222223455555566677899999999998
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM--------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
.+ .+.+-.| .+..+++..|.+.++-+.|..++.+. .-.+. ..+|.-+...-.++|+.++|..+++++.
T Consensus 409 s~-~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 409 SI-LEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hh-hhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 44 3333334 45567778888887766666655544 12222 3344455555567899999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 399 DINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 399 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 486 k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 486 KFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999987 567777664433
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.6e-05 Score=72.02 Aligned_cols=291 Identities=9% Similarity=-0.039 Sum_probs=197.7
Q ss_pred HHHHHHHHHHhC--CChHHHHHHHHhc--CC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHH-HHHHH
Q 008183 137 CGSALVHFYSRF--RSPDNAKKVFDEI--RE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC-VSGAL 208 (575)
Q Consensus 137 ~~~~li~~~~~~--g~~~~A~~~f~~m--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll 208 (575)
....-+.+|+.+ ++-..|...|-.+ .. .|+.....+...+...|+.++|+..|++.+. +.|+..+ .....
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya 273 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYA 273 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHH
Confidence 334455555554 3444444443322 22 3777888999999999999999999998765 3454332 11112
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHH
Q 008183 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQST 286 (575)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 286 (575)
-.+...|+.+....+...+.... .-+...|-.-........+++.|+.+-++.+. ++++..+-.=...+.+.|++++
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHH
Confidence 22345677777766666665432 12222333333444556778888888877444 4555555545566889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH-HHHhc-cCChHHHHHHHHh
Q 008183 287 VLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLI-SAMGR-AGRLEDAERIAMA 364 (575)
Q Consensus 287 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~ 364 (575)
|.-.|+..+... +-+...|..|+.+|...|+..+|...-+..... +..+..+.+.+. ..+.- ..--++|.+++++
T Consensus 353 A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 353 AVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 999999888742 236789999999999999999988776655322 233455544442 22222 2334788888887
Q ss_pred C-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 365 M-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 365 m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
- .++|+ ....+.+...|...|..+.+..++++.+...| |....+.|.+.+...+.+.+|...|......
T Consensus 430 ~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 430 SLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6 67887 66777888889999999999999999998877 4468899999999999999999998876654
No 83
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=3.1e-08 Score=60.35 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=28.5
Q ss_pred hCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 008183 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162 (575)
Q Consensus 129 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 162 (575)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=6.8e-07 Score=88.42 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=174.9
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHH
Q 008183 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLE 289 (575)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 289 (575)
.+.|++.+|.-.|+..++.. |-+...|.-|.-.....++-..|+..+.+.++ +.|....-+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46788999999999888875 66788898898888888888888888887544 5677788888889999999999999
Q ss_pred HHHHHHHcCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHH
Q 008183 290 LFHLLEMRGFA-----P---DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERI 361 (575)
Q Consensus 290 l~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 361 (575)
.++.-.....+ + +..+-.. +.......+.+..++|-++....+..+|..++..|.-.|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99887553211 0 1000000 122222344566677777766767667888899999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 362 AMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 362 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
|+.. .++| |...||-|...++...+.++|+..|++++++.|.-..+...|.-.|...|.+++|.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9987 6788 5889999999999999999999999999999999989989999999999999999998876543
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=5e-06 Score=89.94 Aligned_cols=202 Identities=11% Similarity=0.108 Sum_probs=170.4
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL-------NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS 305 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 305 (575)
|-....|-..|......+++++|+++++++++.- -...|-++++.-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 4556778888888999999999999999877633 2357888888888888888999999999875 223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 008183 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP---DAAVWRALLSFS 381 (575)
Q Consensus 306 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 381 (575)
|..|...|.+.+..++|.++++.|.++++ .....|...++.+.+..+-+.|..++.+. ..-| .+....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999988876 56789999999999999999999999876 3233 344455556666
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCcc
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 438 (575)
.+.|+.+++..+|+..+.-.|.-...|+.++++-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999999887753
No 86
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=4.4e-08 Score=59.64 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=31.1
Q ss_pred hCC-CcccHHHHHHHHhHcCCChHHHHHHHccCC
Q 008183 28 SSQ-ADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60 (575)
Q Consensus 28 ~g~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 60 (575)
.|+ ||..+||.||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 478 999999999999999999999999999995
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=0.00014 Score=72.80 Aligned_cols=252 Identities=11% Similarity=0.068 Sum_probs=145.8
Q ss_pred HHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhcc
Q 008183 144 FYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQ----NSRLVDSLSVFADMRSSDVGSTM-YCVSGALRAAAELA 215 (575)
Q Consensus 144 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~ 215 (575)
.+...|++++|.+.+++..+ | |...++. ...+.. .+....+.+.+.. ..+..|+. .....+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 45567788888887776543 2 3334442 222222 3444444444443 12223333 33445556677788
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC----CCh--hhHHHHHHHHHHcCChHHHHH
Q 008183 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV----LNS--IAWNAMMAGYAQQGDQSTVLE 289 (575)
Q Consensus 216 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~ 289 (575)
++++|...++...+.. +.+...+..+...|...|++++|...+++.++. ++. ..|..+...+...|++++|+.
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888765 555677788888888899999999988874441 222 235567778889999999999
Q ss_pred HHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHH
Q 008183 290 LFHLLEMRGF-APDEYSF-L--AVLTALCNAGLAGESEKW--IERMKVRYKLEPG--LEHYTCLISAMGRAGRLEDAERI 361 (575)
Q Consensus 290 l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 361 (575)
+|++...... .+..... + .++.-+...|..+.+.++ +...... ..... .........++...|+.++|..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9988754322 2222222 1 223333344443333333 2111111 11111 12222456677888999999999
Q ss_pred HHhCC--CCC---C----HHHHHHHH--HHHHHcCChHHHHHHHHHHHhc
Q 008183 362 AMAMP--FEP---D----AAVWRALL--SFSAIHGKADMASKMGKRLIDI 400 (575)
Q Consensus 362 ~~~m~--~~p---~----~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~ 400 (575)
++.+. ... . ..+-..++ -++...|+.++|.+.+.+.+..
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88771 111 1 11222233 3445789999999998887753
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=3.9e-06 Score=80.06 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=155.6
Q ss_pred hCCChHHHHHHHHhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHH
Q 008183 147 RFRSPDNAKKVFDEIRER----DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 222 (575)
-.|++..+..-.+ .... +.....-+.++|...|+++.++ .+..... .|.......+...+....+-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3466666664444 2111 2233445667777778766544 3333332 5555444444443433333333333
Q ss_pred HHHHHHHhCCC-CchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008183 223 IHGHAVVSGLD-RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301 (575)
Q Consensus 223 ~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 301 (575)
-+...+..... .+..+......+|...|++++|++++.. . .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~-~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~- 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK-G--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D- 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT-T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc-c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-
Confidence 33322222222 2334444445667788999999998887 4 45666677788999999999999999999874 3
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHH
Q 008183 302 DEYSFLAVLTALCN----AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWR 375 (575)
Q Consensus 302 ~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 375 (575)
+..+...+..++.. ...+.+|..+|+++..+ ..++..+.+.+..+....|++++|.+++.+. ...| |+.+..
T Consensus 162 eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 162 EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 33445556665543 34689999999998543 4577888899999999999999999998875 4445 477777
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHhcCCCCch
Q 008183 376 ALLSFSAIHGKA-DMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 376 ~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 406 (575)
.++......|+. +.+.+.+.++....|.++.
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 888888888887 6788899999988887653
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.00014 Score=66.31 Aligned_cols=380 Identities=8% Similarity=0.034 Sum_probs=225.1
Q ss_pred HHHHHHHHhHcCCChHHHHHHHccCCCC---ChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHH-HH
Q 008183 35 IYNNLITNYSKSNLLSYSLRLFNHIPSP---NIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASL-FK 107 (575)
Q Consensus 35 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~l-l~ 107 (575)
-+++.+..+.+..++++|.+++..-.++ +....+.|-..|-+..+ |-+.|+++.. ..|...-|..- ..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-----l~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ-----LHPELEQYRLYQAQ 86 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hChHHHHHHHHHHH
Confidence 3567777778889999999998765533 44556666666666666 8888998877 44555444321 23
Q ss_pred HHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHH----HHHhCCChHHHHHHHHhcC-CCCcchHHHHHHHHHhCCCc
Q 008183 108 TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVH----FYSRFRSPDNAKKVFDEIR-ERDVVCYGAMIVGFAQNSRL 182 (575)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~----~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~ 182 (575)
.+.+.+ .+..|.++...|... ....+..+. ..-..+++..+..+.++.+ +.+..+.+.......+.|++
T Consensus 87 SLY~A~-i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKAC-IYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhc-ccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 344555 666777777666432 222222221 1235688999999999998 46777777777777899999
Q ss_pred hHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCch---------------------hHHHH
Q 008183 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV---------------------IVGTG 241 (575)
Q Consensus 183 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---------------------~~~~~ 241 (575)
+.|++-|+...+-+---....|+..+. ..+.++.+.|.+...++++.|+...+ -.-++
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999999877543334456766554 44668899999999999888754321 11223
Q ss_pred HH-------HHHHccCCHHHHHHHHhhhCCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008183 242 LI-------DGYGKAGIVSDARRVFDENLSV-----LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309 (575)
Q Consensus 242 li-------~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 309 (575)
++ ..+.+.|+++.|.+.+-. |++ .|.+|...+.-. -..+++.+..+-+.-+...+. -...||..+
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtD-mPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTD-MPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhc-CCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 33 345678999999999988 763 355665443322 123445555555555555433 346789899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCh
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLE-PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS-AIHGKA 387 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~-~~~g~~ 387 (575)
+-.||+..-++.|-.++.+- ...... .+...|+.|=......-..++|++-++.+.-.-....-...+..- .++.+-
T Consensus 317 LllyCKNeyf~lAADvLAEn-~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN-AHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC-cchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999889888887633 111111 123344433333334556777776655441000000000111111 111111
Q ss_pred HH----HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 388 DM----ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 388 ~~----a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
++ +.+-+++.+++-- .+...-...|.+..++..++++|..-.+
T Consensus 396 d~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 12 2222333333221 1233445667788888888888876544
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.55 E-value=0.0001 Score=68.62 Aligned_cols=287 Identities=14% Similarity=0.093 Sum_probs=181.4
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCcchHHHHH---HHHHhCCCchHHHHHHHHhHHCCCCcCHHHHH-HHHHHHHhcccH
Q 008183 142 VHFYSRFRSPDNAKKVFDEIRERDVVCYGAMI---VGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS-GALRAAAELAAM 217 (575)
Q Consensus 142 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~ 217 (575)
-..+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.-|.+..+ ++||-..-. --...+.++|.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccH
Confidence 34444567777777777777777777776664 357777777777777777765 466643211 112334567788
Q ss_pred HHHHHHHHHHHHhCCCCc--h------------hHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc
Q 008183 218 EQCRVIHGHAVVSGLDRN--V------------IVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ 281 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~--~------------~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 281 (575)
+.|..=|+.+++..-..+ . ......+..+...|+...|.+.....++ +.|...|..-..+|...
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhc
Confidence 888887877776632111 1 1112233445667777777777766443 56777777777888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhH----HHHH---------HHH
Q 008183 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH----YTCL---------ISA 348 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~l---------i~~ 348 (575)
|++..|+.=++...+.. .-+..++.-+-..+...|+.+.++...++.. .+.||-.. |-.| +..
T Consensus 203 ~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred CcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888887776665542 2345555556666677788887777666552 45676322 2211 112
Q ss_pred HhccCChHHHHHHHHhC-CCCCC--H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCch
Q 008183 349 MGRAGRLEDAERIAMAM-PFEPD--A---AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 349 ~~~~g~~~~A~~~~~~m-~~~p~--~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 422 (575)
..+.+++.++.+-.+.. ...|. . ..+..+-..+...+++.+|++...++++.+|+|..++.--..+|....+++
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 33445666666555543 33443 1 223334455566778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhC
Q 008183 423 EVAEVRKVMKDR 434 (575)
Q Consensus 423 ~a~~~~~~m~~~ 434 (575)
+|+.-++...+.
T Consensus 359 ~AI~dye~A~e~ 370 (504)
T KOG0624|consen 359 DAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhc
Confidence 888877766543
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.52 E-value=0.0011 Score=67.07 Aligned_cols=347 Identities=11% Similarity=0.053 Sum_probs=212.0
Q ss_pred HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHH
Q 008183 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFD 159 (575)
Q Consensus 80 a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 159 (575)
|.+..+.-.+. .|-....-.++..+.+...+.+++.+.+.-+.+.+ +.|..++.-|--.-++.|+++.....-.
T Consensus 60 a~~~vr~glr~-----d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 60 AYELVRLGLRN-----DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred HHHHHHHHhcc-----CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 66665555442 23334445566666666558889988888888766 5566777777666777777777666655
Q ss_pred hcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCC-CcCHHHHHHHHH------HHHhcccHHHHHHHHHHHHH
Q 008183 160 EIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDV-GSTMYCVSGALR------AAAELAAMEQCRVIHGHAVV 229 (575)
Q Consensus 160 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~ 229 (575)
...+ .....|..+..++.-.|++..|..+.++..+... .|+...+.-... .....|.++.|.+.+.....
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 5543 3567899999999999999999999999877542 466655543322 23445666666665544332
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHH-HHHHHcCChHHHH-HHH---------------
Q 008183 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMM-AGYAQQGDQSTVL-ELF--------------- 291 (575)
Q Consensus 230 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~A~-~l~--------------- 291 (575)
. +......-..-.+.+.+.+++++|..++...+. .||...|+-.. .++.+-.+.-++. .+|
T Consensus 214 ~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 214 Q-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred H-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh
Confidence 2 122233334456778888999999999988333 56655554433 3332222222222 333
Q ss_pred -------------------HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhcC----------CCCCh
Q 008183 292 -------------------HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK---VRYK----------LEPGL 339 (575)
Q Consensus 292 -------------------~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~----------~~p~~ 339 (575)
..+.+.|++|- |..+.+-+-.....+--.++.-.+. ...| -+|..
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 33334444432 2222222222111111111111111 1111 13444
Q ss_pred h--HHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008183 340 E--HYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415 (575)
Q Consensus 340 ~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 415 (575)
. ++-.++..|-+.|+++.|..+++.. +-.|+ +.-|-.=...+...|++++|..++++..+++-.|...-.--++-.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 3 4456778889999999999999887 55666 444555557778889999999999999999855533222345566
Q ss_pred HhCCCchHHHHHHHHHhhCCC
Q 008183 416 SGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.++.+.++|.++.......|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 788999999999888876664
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.51 E-value=7.2e-05 Score=76.06 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=136.5
Q ss_pred HhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH
Q 008183 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR 256 (575)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 256 (575)
.+.|+++.|+.-|-+... ....+.+......+.+|..+++.+.... .-..-|.-+.+-|+..|+++.|+
T Consensus 717 ~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred HHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHH
Confidence 344555555555444321 2233445555677777777777776553 23344666778888888888888
Q ss_pred HHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 008183 257 RVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE 336 (575)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 336 (575)
++|.+ ...++--|..|.++|+|+.|.++-.+. .|.......|..-..-.-..|++.+|.+++-.+ | .
T Consensus 786 ~lf~e------~~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~ 852 (1636)
T KOG3616|consen 786 ELFTE------ADLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-E 852 (1636)
T ss_pred HHHHh------cchhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-C
Confidence 88876 234566677888888888888775443 334444455555555566678888888776544 1 3
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 337 PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 337 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
|+ .-|.+|-+.|..++..++.++-.-..-..|...+..-+-..|+++.|+.-|-++-+ |..-+++|.
T Consensus 853 p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk 919 (1636)
T KOG3616|consen 853 PD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYK 919 (1636)
T ss_pred ch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhh
Confidence 44 24667888888888888877652111244556666677777888888776655432 445667777
Q ss_pred hCCCchHHHHHH
Q 008183 417 GVGRWDEVAEVR 428 (575)
Q Consensus 417 ~~g~~~~a~~~~ 428 (575)
..+.|++|.++-
T Consensus 920 ~s~lw~dayria 931 (1636)
T KOG3616|consen 920 ASELWEDAYRIA 931 (1636)
T ss_pred hhhhHHHHHHHH
Confidence 777777777664
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=3.8e-05 Score=69.99 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=64.4
Q ss_pred HHhccCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchH
Q 008183 348 AMGRAGRLEDAERIAMAMP----FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 423 (575)
.+-+.|+++.|.+.+..|| -..|++|...+.-. -..+++..+.+-+.-+++++|-.+.+|..++-.|++..-++-
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 4567899999999999995 33577777665432 234667777788888889999888899999999999999999
Q ss_pred HHHHHHH
Q 008183 424 VAEVRKV 430 (575)
Q Consensus 424 a~~~~~~ 430 (575)
|..++.+
T Consensus 329 AADvLAE 335 (459)
T KOG4340|consen 329 AADVLAE 335 (459)
T ss_pred HHHHHhh
Confidence 9888754
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.0006 Score=77.46 Aligned_cols=258 Identities=10% Similarity=0.048 Sum_probs=120.9
Q ss_pred HHHHhCCChHHHHHHHHhcCC----CCc----chHHHHHHHHHhCCCchHHHHHHHHhHHCCC---CcC--HHHHHHHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRE----RDV----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV---GST--MYCVSGALR 209 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~ 209 (575)
..+...|++++|...+++..+ .+. ..++.+...+...|++++|...+.+.....- .+. ..+...+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 344556677777666665422 111 2234444555666777777666666543110 011 123334444
Q ss_pred HHHhcccHHHHHHHHHHHHHh----CCCC---chhHHHHHHHHHHccCCHHHHHHHHhhhCC-----CC--ChhhHHHHH
Q 008183 210 AAAELAAMEQCRVIHGHAVVS----GLDR---NVIVGTGLIDGYGKAGIVSDARRVFDENLS-----VL--NSIAWNAMM 275 (575)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~----g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~li 275 (575)
.+...|+++.|...+.+.... |... ....+..+...+...|++++|...+.+.+. .+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 555666777666666554432 2110 122233444455556677666666655322 01 112233344
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHH
Q 008183 276 AGYAQQGDQSTVLELFHLLEMR----GFAPDEYSF--LAVLTALCNAGLAGESEKWIERMKVRYKLEPG---LEHYTCLI 346 (575)
Q Consensus 276 ~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 346 (575)
..+...|++++|...+.+.... +..+..... ...+..+...|+.+.|..++.... ....... ...+..+.
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~-~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP-KPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC-CCCCccchhHHHHHHHHH
Confidence 4555666666666666655332 100000000 001122334566666666655431 1000000 01123444
Q ss_pred HHHhccCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 347 SAMGRAGRLEDAERIAMAM-------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
.++...|+.++|...+++. +..++ ..+...+..++...|+.++|...+.++++..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5556666666666665544 11111 2344445555666666666666666666544
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.47 E-value=0.00051 Score=70.81 Aligned_cols=93 Identities=12% Similarity=0.097 Sum_probs=65.2
Q ss_pred HHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 343 TCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
....+.+.+.+..++|...+.+. ++.| ....|.-....+...|..++|.+.|...+.++|+++.+..++..++.+.|+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 34445556666666666555544 3333 244555555566677888888888888888999888888899999999988
Q ss_pred chHHHH--HHHHHhhCC
Q 008183 421 WDEVAE--VRKVMKDRR 435 (575)
Q Consensus 421 ~~~a~~--~~~~m~~~~ 435 (575)
-.-|.. ++..+.+.+
T Consensus 734 ~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLD 750 (799)
T ss_pred cchHHHHHHHHHHHhhC
Confidence 777776 777776644
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.00029 Score=79.98 Aligned_cols=299 Identities=7% Similarity=-0.044 Sum_probs=191.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCC----CC---c-----chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH---
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRE----RD---V-----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM--- 201 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~----~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 201 (575)
........+...|++++|...++.... .+ . .....+...+...|++++|...+++....-...+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 334455566678999999888876532 11 1 11122334456889999999999987663111222
Q ss_pred -HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHccCCHHHHHHHHhhhCC------CC---
Q 008183 202 -YCVSGALRAAAELAAMEQCRVIHGHAVVSGL---DR--NVIVGTGLIDGYGKAGIVSDARRVFDENLS------VL--- 266 (575)
Q Consensus 202 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~--- 266 (575)
...+.+...+...|+++.|...+.......- .+ .......+...+...|++++|...+++.+. .+
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 2334455566778999999998888765321 11 123455667788899999999998876433 11
Q ss_pred -ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhH
Q 008183 267 -NSIAWNAMMAGYAQQGDQSTVLELFHLLEMR--GFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEH 341 (575)
Q Consensus 267 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 341 (575)
....+..+...+...|++++|...+.+.... ...+. ..++..+.......|+.+.|...+.....-..-......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 1223445555677789999999999887543 11122 334444556677899999999988877332111111111
Q ss_pred H-----HHHHHHHhccCChHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcC----C--CC
Q 008183 342 Y-----TCLISAMGRAGRLEDAERIAMAMPF-E-PDA----AVWRALLSFSAIHGKADMASKMGKRLIDIN----P--YD 404 (575)
Q Consensus 342 ~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p--~~ 404 (575)
+ ...+..+...|+.+.|..++..... . ... ..+..+..++...|+.++|...++++.+.. . ..
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1 1122445568999999999877621 1 111 124456677888999999999999988642 1 12
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 405 DSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..++..+..+|...|+.++|...+.+..+..
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2366778889999999999999999887543
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=3.4e-05 Score=72.15 Aligned_cols=182 Identities=13% Similarity=0.001 Sum_probs=115.0
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLN-S---IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE--YSFL 307 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 307 (575)
....+..+...|.+.|++++|...|++.+. .|+ . .+|..+..+|.+.|++++|+..|+++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 345666677777788888888888876333 222 1 35666777777888888888888887765322111 1333
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHH
Q 008183 308 AVLTALCNA--------GLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALL 378 (575)
Q Consensus 308 ~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 378 (575)
.+..++.+. |+.+.|.+.++.+... .|+. ..+..+..... ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHH
Confidence 344444433 5667777777766433 3442 22222111100 00000 00112455
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYD---DSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+...|++++|...++++++..|.+ +.++..++.+|.+.|++++|..+++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66888999999999999999886654 468889999999999999999999988764
No 98
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.0018 Score=60.80 Aligned_cols=387 Identities=12% Similarity=0.048 Sum_probs=206.9
Q ss_pred HHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCCChhhHHHHH-HHHh
Q 008183 35 IYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLF-KTCA 110 (575)
Q Consensus 35 ~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p~~~t~~~ll-~~~~ 110 (575)
+.-.+...|..-|++++|..++.-+. .++...|-.|.-.+--.| .|.+....+. -.|+......++ ...-
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg----~Y~eA~~~~~--ka~k~pL~~RLlfhlah 132 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG----QYIEAKSIAE--KAPKTPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH----HHHHHHHHHh--hCCCChHHHHHHHHHHH
Confidence 33334445556677777777766543 233333333322222112 2222221110 123333333333 2333
Q ss_pred hchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--CCcchHHHH-HHHHHhCCCchHHHH
Q 008183 111 SLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAM-IVGFAQNSRLVDSLS 187 (575)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~~~~g~~~~A~~ 187 (575)
+.+ +-+.-..+|+.+...- .-.-+|..+.--.-.+.+|.+++..... |+-...|.- .-+|.+..-++-+.+
T Consensus 133 kln-dEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 133 KLN-DEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred HhC-cHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 344 5555555555543221 1112233332223357788888887765 444445543 345667777777777
Q ss_pred HHHHhHHCCCCcCHHHHHHHHHHHHh--c--ccHHHH--HH----------HHHHHHHhCC------------CC-----
Q 008183 188 VFADMRSSDVGSTMYCVSGALRAAAE--L--AAMEQC--RV----------IHGHAVVSGL------------DR----- 234 (575)
Q Consensus 188 ~~~~m~~~g~~p~~~t~~~ll~~~~~--~--~~~~~a--~~----------~~~~~~~~g~------------~~----- 234 (575)
++..-... -||. |+..=+.+|.. . |+..+. .. .-+.+.++++ -|
T Consensus 207 vl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~ 283 (557)
T KOG3785|consen 207 VLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH 283 (557)
T ss_pred HHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh
Confidence 77766553 3443 22222333322 1 111110 00 1111222110 00
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCC-------hHHHHHHHHHHHHcCCCCCHH-HH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD-------QSTVLELFHLLEMRGFAPDEY-SF 306 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~-t~ 306 (575)
=+...-.|+--|.+.+++.+|..+.++ +.+.+..-|-.-...++..|+ ..-|.+.|+..-..+..-|.. --
T Consensus 284 IPEARlNL~iYyL~q~dVqeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 284 IPEARLNLIIYYLNQNDVQEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred ChHhhhhheeeecccccHHHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 112233455568899999999999999 776555444322222333332 445566665554444433322 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHH-HHHHH
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVWRALL-SFSAI 383 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll-~~~~~ 383 (575)
-++.+++.-...+++..-++..+ +.+=..-|...+ .+..+++..|.+.+|+++|-.+. .-.|..+|.+++ ..|..
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi-~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSI-ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh
Confidence 23444555567789999999888 444344444444 47889999999999999998883 224677777766 45667
Q ss_pred cCChHHHHHHHHHHHhcC-CCCc-hhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEE
Q 008183 384 HGKADMASKMGKRLIDIN-PYDD-SAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 445 (575)
.++++.|..++ ++.+ |.+. .....+.+-|.+++.+=-|.+.|+.+...+.. |. .|-
T Consensus 441 nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~--pE-nWe 498 (557)
T KOG3785|consen 441 NKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT--PE-NWE 498 (557)
T ss_pred cCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC--cc-ccC
Confidence 78888887664 4444 3332 24455667889999999999999988765543 32 575
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=3.4e-05 Score=78.71 Aligned_cols=190 Identities=14% Similarity=0.115 Sum_probs=155.7
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 231 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
+++|-...-..+...+.+.|-...|..+|++ ...|...|-+|...|+..+|..+..+-.+ -+||..-|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 4456666777889999999999999999998 55788899999999999999999988877 478999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 388 (575)
+..-...-+++|.++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 8888888889999998866333 1112222233478899998888764 5555 4778888888888999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.|.+.|.+.+.++|++..+|+.+..+|.+.|+-.+|...+++..+-+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999988877663
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=9.7e-05 Score=80.46 Aligned_cols=222 Identities=15% Similarity=0.083 Sum_probs=176.7
Q ss_pred CCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhh-CCC---CchhHHHHHHHHHHhCCChHHHHHHHHhcCCC-C-cchH
Q 008183 96 LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL-SLH---DKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-D-VVCY 169 (575)
Q Consensus 96 ~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~-~~~~ 169 (575)
+.+...|..-|.-....+ +++.|+.+.+++++. ++. .-..+|.+++++---.|.-+...++|++..+- | ...|
T Consensus 1455 PNSSi~WI~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCcchHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 345567888888888888 999999999998875 221 22357889998888889889999999998773 3 3468
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHH
Q 008183 170 GAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR--NVIVGTGLIDGYG 247 (575)
Q Consensus 170 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~ 247 (575)
..|...|.+.+.+++|-++|+.|.+. ..-....|...+..+.+..+-+.|..++..+++.- +. ......-.+.+-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHh
Confidence 89999999999999999999999874 34566788888999999999999999999888752 33 4566677788889
Q ss_pred ccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHH
Q 008183 248 KAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE--YSFLAVLTALCNAGLAG 320 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 320 (575)
++|+.+.++.+|+..+. +.-...|+..|..=.++|+.+.+..+|++....++.|-. ..|.-.|..=...|+-+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 99999999999998554 456788999999999999999999999999998887764 34444554434444433
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.0013 Score=68.30 Aligned_cols=349 Identities=12% Similarity=0.070 Sum_probs=215.7
Q ss_pred CcccHHHHHHH--HhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHH------------HHHHHhhCCCC
Q 008183 31 ADRSIYNNLIT--NYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLN------------IFLSMLRHPTL 93 (575)
Q Consensus 31 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~------------~~~~m~~~~~~ 93 (575)
-|+.+-.++++ .|.-.|+++.|.+-.+-++ +-..|..|.+.|.+..+ |.- .+++..+.+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~-- 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG-- 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC--
Confidence 67788888875 6788899999988877774 45679999888877655 333 333333332
Q ss_pred CcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-CCcchHHHH
Q 008183 94 SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-RDVVCYGAM 172 (575)
Q Consensus 94 ~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~l 172 (575)
+ .+=.-+.-.....| .+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-.. .=..||...
T Consensus 800 ----~-e~eakvAvLAieLg-MlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 800 ----E-EDEAKVAVLAIELG-MLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred ----c-chhhHHHHHHHHHh-hHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 2 12122222334667 9999999999887654 345678889999999988754322 122356666
Q ss_pred HHHHHhCCCchHHHHHHHHhH----------HCCC---------CcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008183 173 IVGFAQNSRLVDSLSVFADMR----------SSDV---------GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~----------~~g~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 233 (575)
..-+-..++.+.|++.|++.. .... ..|...|.-...-....|+.+.|..+|.....
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 666667788888888887642 1110 11222333333333445677777766665543
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
|-+++...|-.|+.++|-++-++ ..|......+...|-..|++.+|...|.+.+ +|...|+.|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e---sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc 1003 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE---SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC 1003 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh---cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 45566777778888888888766 4567777788889999999999999987754 333444433
Q ss_pred HhcC---------------CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHH-HhC----------CC
Q 008183 314 CNAG---------------LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA-MAM----------PF 367 (575)
Q Consensus 314 ~~~g---------------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m----------~~ 367 (575)
-..+ +.-.|-++|++. |.. ...-+..|-++|.+.+|+++- +.- .+
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 3222 333344444432 211 123345788899988888762 211 12
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------------h-cCCC------C---chhHHHHHHH
Q 008183 368 --EPDAAVWRALLSFSAIHGKADMASKMGKRLI---------------------D-INPY------D---DSAYVIVANV 414 (575)
Q Consensus 368 --~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------------------~-~~p~------~---~~~~~~l~~~ 414 (575)
..|+...+.-..-+..+.++++|..++-... + +.|. . ......+...
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 2356555555566666677777765543322 1 1111 1 1245568888
Q ss_pred HHhCCCchHHHHHH
Q 008183 415 LSGVGRWDEVAEVR 428 (575)
Q Consensus 415 ~~~~g~~~~a~~~~ 428 (575)
|.++|.+..|-+-|
T Consensus 1155 c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKF 1168 (1416)
T ss_pred HHhccchHHHHHHH
Confidence 99999888776654
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00068 Score=71.71 Aligned_cols=363 Identities=16% Similarity=0.158 Sum_probs=223.8
Q ss_pred CCCCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---H------
Q 008183 10 QPQNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---S------ 80 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a------ 80 (575)
.+.+++.......+..+..|..++.++|+|...|...++-.+- .+.+-+ .--+..+.-||...+ |
T Consensus 849 EkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~----yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPER--FLKENP----YYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHH--hcccCC----cchhhHHhhhhcccCCceEEEeecc
Confidence 3445566666777777888888999999999999887664432 111111 111112222332222 1
Q ss_pred -------------HHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCC--CchhHHHHHHHHH
Q 008183 81 -------------LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLH--DKPFCGSALVHFY 145 (575)
Q Consensus 81 -------------~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~ 145 (575)
-.+|+...+.-. .+.|...|..++.- .-..-+++.++++..+++ .|+.-.+..+.++
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv--~R~D~~LW~~VL~e------~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLV--ERSDPDLWAKVLNE------ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHH--hccChHHHHHHHhc------cChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 112222111000 12244455555422 222335667777777653 3556667778888
Q ss_pred HhCCChHHHHHHHHhcC-CCCcch-----HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHH
Q 008183 146 SRFRSPDNAKKVFDEIR-ERDVVC-----YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219 (575)
Q Consensus 146 ~~~g~~~~A~~~f~~m~-~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 219 (575)
...+-..+-.++++.+. ++++.+ -|.||-.-. .-+..+..+..+++..-+ .|+ +...+...+-+++
T Consensus 995 MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEE 1066 (1666)
T KOG0985|consen 995 MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEE 1066 (1666)
T ss_pred HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHH
Confidence 88888888888888875 343333 334443333 345566777777764432 233 2344556677788
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 299 (575)
|..+|+.. ..+....+.||+ .-+.+|.|.+.-++ ..+| ..|+.+..+-.+.|...+|++-|-+.
T Consensus 1067 AF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~-~n~p--~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1067 AFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAER-CNEP--AVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHh-hCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 88887643 444555555554 35678888888777 5554 46888999999999999998877542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 008183 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLS 379 (575)
Q Consensus 300 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 379 (575)
-|...|..++..+.+.|.+++-.+++. |..+..-+|.+. +.||-+|++.+++.+-++++. .||..-...+..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~-MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLL-MARKKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHH-HHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhH
Confidence 367788899999999999999999887 545545566554 478889999999988877763 567766777777
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHH
Q 008183 380 FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 380 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
-|...|.++.|.-++... +.|.-|...+...|++..|..
T Consensus 1203 rcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666543 233444444444454444443
No 103
>PLN02789 farnesyltranstransferase
Probab=98.33 E-value=0.0003 Score=68.19 Aligned_cols=228 Identities=14% Similarity=0.051 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHH-HHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY-CVSGALRAAAELA-AMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 245 (575)
+++.+-..+...++.++|+.++.++.+. .|+.. .|..--.++...+ .++++...+..+.+.. +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444455555566667777777666552 34433 2333223333334 3455555555555443 3333344443333
Q ss_pred HHccCCH--HHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008183 246 YGKAGIV--SDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321 (575)
Q Consensus 246 ~~~~g~~--~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 321 (575)
+.+.|+. +++.++++.++. +.|..+|+...-.+...|+++++++.+.++.+.+.. |...|+.....+.+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~--- 191 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPL--- 191 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccc---
Confidence 3333331 334444443222 344445555544455555555555555555444332 22333322222221100
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC----hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHc----CChHHHH
Q 008183 322 SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR----LEDAERIAMA-MPFEP-DAAVWRALLSFSAIH----GKADMAS 391 (575)
Q Consensus 322 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~----g~~~~a~ 391 (575)
.|. .+++.+...+ +...| |...|+.+...+... ++..+|.
T Consensus 192 ------------------------------l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 192 ------------------------------LGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred ------------------------------cccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 011 1234444422 23445 466676666666652 3345577
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCC------------------CchHHHHHHHHHh
Q 008183 392 KMGKRLIDINPYDDSAYVIVANVLSGVG------------------RWDEVAEVRKVMK 432 (575)
Q Consensus 392 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 432 (575)
+.+.+..+.+|.++.+...|++.|+... ..++|.++++.+.
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 7777777777777777778888887532 2356888888774
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=2.8e-05 Score=79.32 Aligned_cols=211 Identities=17% Similarity=0.099 Sum_probs=166.6
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCCh
Q 008183 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQ 284 (575)
Q Consensus 206 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 284 (575)
.+...+...|-...|..+++.+. .+.-.|.+|+..|+-.+|..+..+-++ +||...|-.+.....+..-+
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 34555666777777877777553 455688999999999999999877566 77888888888888888889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHH
Q 008183 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 285 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
++|.++++..... .-..+.......++++++.+.|+.-. .+.|- ..+|-.+--+..+.++++.|.+.|.
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 9999999875432 11111112234688999999888442 34443 5678888888889999999999998
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 364 AM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 364 ~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.- ...|| ...||.+-.+|.+.++-.+|...++++.+.+-.+...|...+-...+-|.|++|.+.+.++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 76 67886 88999999999999999999999999999887777888888889999999999999999887543
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.32 E-value=4.7e-05 Score=68.58 Aligned_cols=117 Identities=11% Similarity=0.092 Sum_probs=90.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--hHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFS-AIHGK--ADM 389 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~ 389 (575)
.++.+++...++.... ..| +...|..+...|...|++++|...|++. .+.| +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4555666666655432 234 4788888888888999999998888877 4556 477777777764 56666 589
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
|.++++++++.+|.++.++..+...+...|++++|...++++.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999998899999999999999999999999887653
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00011 Score=78.37 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=107.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 008183 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE-YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYT 343 (575)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 343 (575)
.++..+-.|.....+.|+.++|+.+++...+. .||. .....+...+.+.+.+++|....++.. ...|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHH
Confidence 34667777888888899999999999888874 5554 556677788888899999998888774 34566 56677
Q ss_pred HHHHHHhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 344 CLISAMGRAGRLEDAERIAMAMP-FEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
.+..++.+.|++++|..+|++.- -.|+ ..+|.++..++...|+.++|...|+++++...+-...|+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 77888888999999999998882 3444 7888888888888999999999999988866444344443
No 107
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00077 Score=63.16 Aligned_cols=106 Identities=10% Similarity=0.136 Sum_probs=60.0
Q ss_pred CcccHHHHHHHHhH-cCCChHHHHHHHccCCCC--ChhhHHHHHHHHhcCch--HHHHHHHHhhCCCCCcCCChhhHHHH
Q 008183 31 ADRSIYNNLITNYS-KSNLLSYSLRLFNHIPSP--NIVSWTALISAHSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASL 105 (575)
Q Consensus 31 ~~~~~~~~li~~~~-~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~l 105 (575)
|++.+.+.|+--.+ |.++-++-..+-..+... |..+..++ .|.+..- |+++|...... .|+-...+.-
T Consensus 118 ~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsv--hYmR~HYQeAIdvYkrvL~d-----n~ey~alNVy 190 (557)
T KOG3785|consen 118 PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASV--HYMRMHYQEAIDVYKRVLQD-----NPEYIALNVY 190 (557)
T ss_pred CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHH--HHHHHHHHHHHHHHHHHHhc-----ChhhhhhHHH
Confidence 77777777765444 556666555555555421 22222221 1333322 99999998874 4777777777
Q ss_pred HHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008183 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHF 144 (575)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 144 (575)
+..|...-+-.+.+..++.--++. ++.++..-|....-
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn 228 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACN 228 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHH
Confidence 766654442566666666665554 34455555544433
No 108
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=1.5e-06 Score=53.68 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST 200 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 200 (575)
++||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 109
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=1.7e-06 Score=53.39 Aligned_cols=35 Identities=31% Similarity=0.645 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 303 (575)
.+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.25 E-value=0.00013 Score=68.27 Aligned_cols=181 Identities=14% Similarity=0.005 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHccCCHHHHHHHHhhhCC-CC-Chh---hH
Q 008183 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV---IVGTGLIDGYGKAGIVSDARRVFDENLS-VL-NSI---AW 271 (575)
Q Consensus 200 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~---~~ 271 (575)
....+......+...|+++.|...++.+.+.. +.+. ..+..+..+|.+.|++++|...+++.+. .| +.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45677778888899999999999999998763 2222 4667788999999999999999998544 23 222 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH
Q 008183 272 NAMMAGYAQQ--------GDQSTVLELFHLLEMRGFAPDEY-SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342 (575)
Q Consensus 272 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 342 (575)
..+..++.+. |+.++|.+.|+.+.+. .|+.. ....+... .. . .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH-H--------HHH
Confidence 5556666654 7889999999999875 33332 22211111 00 0 0001 0 112
Q ss_pred HHHHHHHhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 343 TCLISAMGRAGRLEDAERIAMAM----PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
..+...|.+.|++++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 25566788999999999888876 2233 367888999999999999999998888766544
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.0013 Score=65.15 Aligned_cols=370 Identities=15% Similarity=0.101 Sum_probs=227.5
Q ss_pred HhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCCh-hhHHHHHHHHhhchh
Q 008183 42 NYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQ-RTLASLFKTCASLSH 114 (575)
Q Consensus 42 ~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~-~t~~~ll~~~~~~~~ 114 (575)
..+..|+++.|...|-+.. ++|-+.|..-..+|+..|+ |++=-.+-++ ..|+- -.|+..-.++...|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-----l~p~w~kgy~r~Gaa~~~lg- 84 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR-----LNPDWAKGYSRKGAALFGLG- 84 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh-----cCCchhhHHHHhHHHHHhcc-
Confidence 3456788999999886543 5688888888888888888 4443333333 55553 46777777777778
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHh------cC-CC------CcchHHHHHHHHHhC--
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE------IR-ER------DVVCYGAMIVGFAQN-- 179 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~------m~-~~------~~~~~~~li~~~~~~-- 179 (575)
+++.|..-+..-++.. +.+...++.|.+++.-. ..+.+.|.. .. .| ....|..++..+-++
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred cHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 8999988888877764 55667777777777111 011112211 00 00 112233343333221
Q ss_pred --------CCchHHHHHHHHh-----HHC-------CCCc------------CH----------HHHHHHHHHHHhcccH
Q 008183 180 --------SRLVDSLSVFADM-----RSS-------DVGS------------TM----------YCVSGALRAAAELAAM 217 (575)
Q Consensus 180 --------g~~~~A~~~~~~m-----~~~-------g~~p------------~~----------~t~~~ll~~~~~~~~~ 217 (575)
.+...|...+... ... +..| |. .-...+.++.-+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111222111110 001 1111 00 1233456666667788
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC-Ch-h-------hHHHHHHHHHHcCChHHHH
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL-NS-I-------AWNAMMAGYAQQGDQSTVL 288 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~-~-------~~~~li~~~~~~g~~~~A~ 288 (575)
+.+.+-+...+... .+..-++..-.+|...|.+.+....-+..++.. .. . +...+..+|.+.++++.|+
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 88888888887764 566667777788888888777665554423311 11 1 1222344677778888899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHHhC-C
Q 008183 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLEDAERIAMAM-P 366 (575)
Q Consensus 289 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~ 366 (575)
..|.+....-..|+..+ +....+++....... .-+.|+. .-...=...+.+.|++.+|.+.|.++ .
T Consensus 319 ~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 88888766545544322 222334444433322 2234442 11111245567889999999999887 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 367 FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 367 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..| |...|..-..+|.+.|.+..|+.-.+..++++|+....|.-=..++....+|+.|.+.|++-.+.+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456 588899999999999999999999999999999888888888888888889999999888776654
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.24 E-value=0.0025 Score=65.38 Aligned_cols=254 Identities=14% Similarity=0.198 Sum_probs=131.2
Q ss_pred hCCChHHHHHHHHhcCCCCcch--HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHH
Q 008183 147 RFRSPDNAKKVFDEIRERDVVC--YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
....+.+|..+++.+..+++.+ |..+...|+..|+++.|.++|.+.- .+.-.|..|.+.|.++.|.++-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 3444555555555554433322 4445555555555555555554431 1333445555555555554443
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--
Q 008183 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD-- 302 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-- 302 (575)
.+. .|-+.....|-+-..-.-+.|++.+|+++|-. +..|+. -|..|-++|..+..+++..+- .|+
T Consensus 815 ~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyit-i~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l 881 (1636)
T KOG3616|consen 815 EEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYIT-IGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHL 881 (1636)
T ss_pred HHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEE-ccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhhh
Confidence 222 22223333444444444455555555555555 444443 244555566655555554432 222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCC-----HHHHHH-
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPD-----AAVWRA- 376 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-----~~~~~~- 376 (575)
..|-..+..-+...|++..|...|-+. .-|.+-+.+|-..+.+++|.++-+.-+ ..| ...|.-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea----------~d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEA----------GDFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKS 950 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhh----------hhHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHh
Confidence 234555666677778888888776544 135677788888888888888876653 112 222322
Q ss_pred -----HHHHHHHcCChHHHHHHHHH---------HHhcC--CCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 377 -----LLSFSAIHGKADMASKMGKR---------LIDIN--PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 377 -----ll~~~~~~g~~~~a~~~~~~---------~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.+..+-++|-++.|...... +..+. ..-+.+..-+.-.+...|++++|-+.+-+..+
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 12223344544444332211 11111 11233455566677888999999776655443
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0085 Score=60.33 Aligned_cols=332 Identities=13% Similarity=0.096 Sum_probs=179.6
Q ss_pred HHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHH--HHHHHH-
Q 008183 73 AHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA--LVHFYS- 146 (575)
Q Consensus 73 ~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~- 146 (575)
-+..+|+ |+....++... .+-|...+..=+-++...+ .++.|..+.. ..+. ..+++. +=.+|+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~----~pdd~~a~~cKvValIq~~-ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSI----VPDDEDAIRCKVVALIQLD-KYEDALKLIK---KNGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HhccchHHHHHHHHHHHHHhc----CCCcHhhHhhhHhhhhhhh-HHHHHHHHHH---hcch---hhhcchhhHHHHHHH
Confidence 3444555 88888887774 3335556666666777777 7777764332 2221 111222 234444
Q ss_pred -hCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCc-CHHHHHHHHHHHHhcccHHHHHHHH
Q 008183 147 -RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 147 -~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
+.+..++|...++....-|..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-... ..
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-
Confidence 66888888888886555555466656667778888999999998886654332 122222222221111 01
Q ss_pred HHHHHhCCCCchhHHHH---HHHHHHccCCHHHHHHHHhhhCC-------CCCh-----hhH-----HHHHHHHHHcCCh
Q 008183 225 GHAVVSGLDRNVIVGTG---LIDGYGKAGIVSDARRVFDENLS-------VLNS-----IAW-----NAMMAGYAQQGDQ 284 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~-------~~~~-----~~~-----~~li~~~~~~g~~ 284 (575)
..+......| ..+|.. ....+...|++.+|++++..++. ..|. ..= --|.-.+-..|+-
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0122222222 223333 34456778999999999887421 1111 111 1133346678999
Q ss_pred HHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHH--HHHHHHHHHHhc----------CCCCChhHHHHHHHH
Q 008183 285 STVLELFHLLEMRGFAPDEY----SFLAVLTALCNAGLAGE--SEKWIERMKVRY----------KLEPGLEHYTCLISA 348 (575)
Q Consensus 285 ~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~ 348 (575)
++|..++....+... +|.. .-|.|+ +.....++-. +...++...... .-.-...--++++.+
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888743 3432 222222 2222222111 111111110000 000011112334444
Q ss_pred HhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHH-HHcC-ChHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhCCCchHH
Q 008183 349 MGRAGRLEDAERIAMAMP-FEPDAAVWRALLSFS-AIHG-KADMASKMGKRLIDINPYD-DSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~-~~~g-~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a 424 (575)
| .+..+.+.++-...+ ..|.. .+.+++..+ .... ....+.+++....+..|.+ ..+....+......|+++.|
T Consensus 319 ~--tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred H--hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 3 345566777666664 33443 344444433 3332 4777888888887888876 33566777888999999999
Q ss_pred HHHHH
Q 008183 425 AEVRK 429 (575)
Q Consensus 425 ~~~~~ 429 (575)
.+++.
T Consensus 396 ~~il~ 400 (652)
T KOG2376|consen 396 LEILS 400 (652)
T ss_pred HHHHH
Confidence 99998
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.19 E-value=0.00023 Score=64.07 Aligned_cols=153 Identities=11% Similarity=0.072 Sum_probs=109.2
Q ss_pred HHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008183 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 322 (575)
+..|.+.|+++......+..+.+.. .|...++.++++..++...+.. +.|...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4567777777776555544222111 1112556677777777766653 34677888888888899999999
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHH-HhccCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008183 323 EKWIERMKVRYKLEPG-LEHYTCLISA-MGRAGR--LEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKR 396 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 396 (575)
...+++.. .+.|+ ...+..+..+ +...|+ .++|.+++++. ...| +..++..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99988773 34564 6777777775 467677 58999999887 4556 578888888999999999999999999
Q ss_pred HHhcCCCCchhH
Q 008183 397 LIDINPYDDSAY 408 (575)
Q Consensus 397 ~~~~~p~~~~~~ 408 (575)
+++..|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999887766543
No 115
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.19 E-value=0.011 Score=60.19 Aligned_cols=407 Identities=9% Similarity=0.010 Sum_probs=213.0
Q ss_pred CCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHH
Q 008183 13 NTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLS 86 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~ 86 (575)
+..++|......-++..+.+.+.|..+--.+-...++++|.+.|.... +.|...|--+----++.++ ..+.-.+
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555554444444556666666666666677777777776543 3344444433222233333 3333333
Q ss_pred HhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCC-CCchhHHHHHHH------HHHhCCChHHHHHHHH
Q 008183 87 MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSL-HDKPFCGSALVH------FYSRFRSPDNAKKVFD 159 (575)
Q Consensus 87 m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~------~~~~~g~~~~A~~~f~ 159 (575)
..+. .+-....|..+.-+.--.| +...+..+.+...+... .|+...+.-... ...+.|..++|.+.+.
T Consensus 135 LLql----~~~~ra~w~~~Avs~~L~g-~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 135 LLQL----RPSQRASWIGFAVAQHLLG-EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHh----hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3332 1223345555555555566 77777777777766652 455554433222 2345677777777665
Q ss_pred hcCCC--Ccch-HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHH-hcc-cHHHHHHHHHHHHHhCCCC
Q 008183 160 EIRER--DVVC-YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA-ELA-AMEQCRVIHGHAVVSGLDR 234 (575)
Q Consensus 160 ~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~-~~~~a~~~~~~~~~~g~~~ 234 (575)
..... |-.. -.+-..-+.+.+++++|..++..+... .||..-|...+..+. +.. ..+....+|....+. ++.
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r 286 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPR 286 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccc
Confidence 54331 2222 233455567778888888888887764 477666655554444 222 223233455544332 111
Q ss_pred chhHHHHHHHHHHccCCHHHH-HHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH----HHcC----------C
Q 008183 235 NVIVGTGLIDGYGKAGIVSDA-RRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL----EMRG----------F 299 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g----------~ 299 (575)
....-..=++.. ....+.+. -+++...+...-...+..+.+.|-.-...+-..++.-.+ ...| -
T Consensus 287 ~e~p~Rlplsvl-~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 287 HECPRRLPLSVL-NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cccchhccHHHh-CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 000000000000 01112222 222222233222223333333332222111111111111 1111 1
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHH
Q 008183 300 APDE--YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVW 374 (575)
Q Consensus 300 ~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~ 374 (575)
+|.. .|+..+...+-..|+++.|..+++... +-.|+ ++.|-.=...+...|.+++|..++++.. -.||...-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 3444 345556677888999999999999663 44677 5677777788999999999999998873 24555444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCC---C---c-hhHHH--HHHHHHhCCCchHHHHHHHHH
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPY---D---D-SAYVI--VANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~---~-~~~~~--l~~~~~~~g~~~~a~~~~~~m 431 (575)
.--..-..+.++.++|.++.....+.+.. + . -.|.. =..+|.+.|++..|.+=|..+
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 34445556778899999988887765531 1 0 12222 245677888887777655444
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.17 E-value=8.8e-05 Score=63.13 Aligned_cols=106 Identities=12% Similarity=-0.039 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008183 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSA 382 (575)
Q Consensus 306 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 382 (575)
+.....++...|++++|...|.... .+.| +...|..+..++.+.|++++|...|++. .+.| +...|..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3345566677777777777777663 2344 3667777777777778888887777776 3444 4777777777777
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 383 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
..|+.++|...+++.++..|.++..+.....+
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 78888888888888888887777666554443
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00034 Score=63.14 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=86.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 008183 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352 (575)
Q Consensus 273 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 352 (575)
.+-..+...|+-+....+....... ..-|.......+....+.|++.+|...+.+.. . .-++|...|+.+.-+|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~-l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-R-LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-c-cCCCChhhhhHHHHHHHHc
Confidence 3444455555555555554443322 11233334445555566666666666666552 1 2233456666666666666
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 008183 353 GRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428 (575)
Q Consensus 353 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 428 (575)
|++++|..-|.+. .+.| +....+.|.-.+.-.|+.+.|+.++.......+.+..+-..|.......|++++|.++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666665554 3334 35556666666666666666666666666666656666666666666666666666553
No 118
>PLN02789 farnesyltranstransferase
Probab=98.14 E-value=0.0033 Score=60.98 Aligned_cols=209 Identities=10% Similarity=-0.001 Sum_probs=139.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCC---CcchHHHHHHHHHhCC-CchHHHHHHHHhHHCCCCcCHHHHHHHHHHHH
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRER---DVVCYGAMIVGFAQNS-RLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 212 (575)
+++.+-..+...++.++|+.+.+++.+. +..+|+.--..+...| ++++++..++++.+... -+..+|..--..+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHH
Confidence 4556666777888999999999998763 4446666556666667 67999999999987542 23345655544555
Q ss_pred hcccH--HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc---CCh-
Q 008183 213 ELAAM--EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ---GDQ- 284 (575)
Q Consensus 213 ~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~---g~~- 284 (575)
+.+.. +.+..+...+++.. +-+..+|+...-++.+.|+++++++.+++++. ..|..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 56653 66788888888765 66788999999999999999999999999665 66788898877666554 222
Q ss_pred ---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhc
Q 008183 285 ---STVLELFHLLEMRGFAPDEYSFLAVLTALCNA----GLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGR 351 (575)
Q Consensus 285 ---~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 351 (575)
+++++...++.... +-|...|+.+...+... +...+|..++.+.. + ..| +......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~-~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL-S--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh-c--ccCCcHHHHHHHHHHHHh
Confidence 34555555555542 22556666666666552 23345666655542 1 233 24555666666664
No 119
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=4.1e-06 Score=51.32 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCc
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 199 (575)
+.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999888887
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.0015 Score=64.25 Aligned_cols=174 Identities=14% Similarity=0.083 Sum_probs=120.7
Q ss_pred HHHHHHHHhhhCC------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 252 VSDARRVFDENLS------VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 252 ~~~A~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
+.++++.-+. ++ .++...+...+.+.........+-.++ .+... ..-...-|..-+. ....|.+++|+..
T Consensus 253 Ia~lr~ra~q-~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~-~~~~aa~YG~A~~-~~~~~~~d~A~~~ 328 (484)
T COG4783 253 IADLRNRAEQ-SPPYNKLDSPDFQLARARIRAKYEALPNQQAADLL-AKRSK-RGGLAAQYGRALQ-TYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHh-CCCCCCCCCccHHHHHHHHHHHhccccccchHHHH-HHHhC-ccchHHHHHHHHH-HHHhcccchHHHH
Confidence 4455555555 44 334445555555443333333333332 22222 1112333444443 4567899999999
Q ss_pred HHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 326 IERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 326 ~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
+..+... .|+ ........+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++++|..++++....+|
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9988543 455 556667778899999999999999988 56776 77788888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 403 YDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 403 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.++..|..|..+|...|+..++.....+..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999998888877766554
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.12 E-value=3.6e-05 Score=65.53 Aligned_cols=99 Identities=11% Similarity=-0.057 Sum_probs=87.7
Q ss_pred CCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 008183 335 LEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412 (575)
Q Consensus 335 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 412 (575)
+.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++|.++.++..+.
T Consensus 22 ~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 34553 556777889999999999999987 4556 5889999999999999999999999999999999999999999
Q ss_pred HHHHhCCCchHHHHHHHHHhhCC
Q 008183 413 NVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.++...|++++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987643
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00025 Score=70.73 Aligned_cols=242 Identities=14% Similarity=0.075 Sum_probs=168.8
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHH
Q 008183 176 FAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDA 255 (575)
Q Consensus 176 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 255 (575)
+.++|++.+|.-.|+...+.. +-+...|--|-...+..++-..|...+...++.. +-+..+.-+|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 467888888888888776652 2244567777777777777777888888777764 55677777788888888888888
Q ss_pred HHHHhhhCC-C----------CChhhHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008183 256 RRVFDENLS-V----------LNSIAWNAMMAGYAQQGDQSTVLELFHLLE-MRGFAPDEYSFLAVLTALCNAGLAGESE 323 (575)
Q Consensus 256 ~~~~~~~~~-~----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 323 (575)
.+.++.=+. . ++...-+. ..+..........++|-++. ..+..+|......|--.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 888775111 0 01000000 11222223445566666664 4453455555556655677889999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008183 324 KWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDI 400 (575)
Q Consensus 324 ~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 400 (575)
..|+... .++|+ ...||.|.-.++...+.++|...|++. .++|+ +.++..|.-+|...|.+++|.+.|-.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999774 55776 789999999999999999999999987 78998 888888999999999999999998888764
Q ss_pred CCC----------CchhHHHHHHHHHhCCCchHH
Q 008183 401 NPY----------DDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 401 ~p~----------~~~~~~~l~~~~~~~g~~~~a 424 (575)
.+. +..+|..|=.++...++.|-+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 432 123566665555555555543
No 123
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=6e-06 Score=50.57 Aligned_cols=33 Identities=30% Similarity=0.621 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 301 (575)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.08 E-value=0.00095 Score=72.29 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
++--|-.-|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33334444445555555555555555555555555444444443
No 125
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.00 E-value=0.014 Score=54.76 Aligned_cols=277 Identities=14% Similarity=0.094 Sum_probs=167.8
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCcchHHHHH---HHHHhCCCchHHHHHHHHhHHCCCCcC------------H--HHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMI---VGFAQNSRLVDSLSVFADMRSSDVGST------------M--YCVS 205 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~--~t~~ 205 (575)
..|...|+..-|+.=|+...+..+..+.+-| ..+.+.|.+++|..-|+...+....-+ . ....
T Consensus 80 T~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~ 159 (504)
T KOG0624|consen 80 TVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLV 159 (504)
T ss_pred HHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHH
Confidence 3444555555555555444432222222222 234556666666666666554321100 0 1122
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhh--CCCCChhhHHHHHHHHHHcCC
Q 008183 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDEN--LSVLNSIAWNAMMAGYAQQGD 283 (575)
Q Consensus 206 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 283 (575)
..+..+...|+...+......+++.. +-|...+..-..+|...|.+..|..-++.. +...++.+..-+-..+...|+
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence 33444555677777777777777653 456777777777888888888777665541 334555566666666777788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHH-------HH------HHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHH
Q 008183 284 QSTVLELFHLLEMRGFAPDEYSFLA-------VL------TALCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCL 345 (575)
Q Consensus 284 ~~~A~~l~~~m~~~g~~p~~~t~~~-------ll------~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l 345 (575)
.+.++...++-.+ +.||...... +. ......+++.++.+-.+.... ..|. ...+..+
T Consensus 239 ~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 239 AENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVL 313 (504)
T ss_pred HHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeehee
Confidence 8887777777665 4555432111 11 112334666666666665532 2344 2344556
Q ss_pred HHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchH
Q 008183 346 ISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 423 (575)
-..|...|++.+|++.-.+. .+.|| +.++.-=..+|.....++.|..-|+.+.+.+++|..+-..+ +.
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl----------e~ 383 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL----------ER 383 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH----------HH
Confidence 66777889999999887766 56675 88888888899999999999999999999999886553332 55
Q ss_pred HHHHHHHHhhCC
Q 008183 424 VAEVRKVMKDRR 435 (575)
Q Consensus 424 a~~~~~~m~~~~ 435 (575)
|.++.++..+++
T Consensus 384 Akrlkkqs~kRD 395 (504)
T KOG0624|consen 384 AKRLKKQSGKRD 395 (504)
T ss_pred HHHHHHHhccch
Confidence 666665554443
No 126
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.0007 Score=70.10 Aligned_cols=241 Identities=17% Similarity=0.115 Sum_probs=161.8
Q ss_pred CCchhHHHHHHH--HHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-C--------CCcC
Q 008183 132 HDKPFCGSALVH--FYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS-D--------VGST 200 (575)
Q Consensus 132 ~~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~ 200 (575)
..|..+..++++ .|..-|+.|.|.+-.+.++ +...|..|.+.|.+..+.+-|.--+..|... | -.|+
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 446777777775 4778899999988877665 5678999999999998888777666665321 1 1222
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCC-hhhHHHHHHHHH
Q 008183 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLN-SIAWNAMMAGYA 279 (575)
Q Consensus 201 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~~~ 279 (575)
.+=..+.-.....|.+++|+.+|++-.+.. .|=..|-..|.+++|.++-+. -..-. -.||..-..-+-
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~-~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAET-KDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhh-ccceehhhhHHHHHHHHH
Confidence 222333333467889999999998877643 455677888999999988765 22211 134555555555
Q ss_pred HcCChHHHHHHHHHH----------HHcCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh
Q 008183 280 QQGDQSTVLELFHLL----------EMRGF---------APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE 340 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m----------~~~g~---------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 340 (575)
..++.+.|++.|++- ..... .-|...|......+...|+.+.|+.+|... +
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-~--------- 939 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-K--------- 939 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-h---------
Confidence 667777777777542 22111 123334444444455678888888888755 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
-|-+++...|-.|+.++|-++-++-+ |....-.|..-|-..|++.+|..+|.++.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 35567777788889999888888754 55555567888888888888888887765
No 127
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0057 Score=60.84 Aligned_cols=341 Identities=15% Similarity=0.076 Sum_probs=173.7
Q ss_pred hcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCCh
Q 008183 75 SNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP 151 (575)
Q Consensus 75 ~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 151 (575)
...|+ |+.+|.+..... ++|.+.|+.-..+++..+ +++.+.+=-..-++.. +.=+.-|+.+-.+..-.|++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~----p~nhvlySnrsaa~a~~~-~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS----PTNHVLYSNRSAAYASLG-SYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred cccccHHHHHHHHHHHHccC----CCccchhcchHHHHHHHh-hHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 34455 777777777653 457777777777777777 7776665544444433 22234566666666667777
Q ss_pred HHHHHHHHhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHh-HHCCCCcCH--------HHHHHHHHHHHhc-----
Q 008183 152 DNAKKVFDEIRER---DVVCYGAMIVGFAQNSRLVDSLSVFADM-RSSDVGSTM--------YCVSGALRAAAEL----- 214 (575)
Q Consensus 152 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~~--------~t~~~ll~~~~~~----- 214 (575)
++|...|.+-.+. |...++-+..++... . ++.+.|..- .-.++.-++ .+|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 7777777765442 344555555554111 0 001111000 000011111 1222222222110
Q ss_pred --ccHHHHHHHHHHHHH--------hC-------CCC------------c----------hhHHHHHHHHHHccCCHHHH
Q 008183 215 --AAMEQCRVIHGHAVV--------SG-------LDR------------N----------VIVGTGLIDGYGKAGIVSDA 255 (575)
Q Consensus 215 --~~~~~a~~~~~~~~~--------~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A 255 (575)
.+.+...+.+..+.. .| ..| | ..-...+.++.-+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 001111111111100 00 011 0 01123445555555666666
Q ss_pred HHHHhhhCCCCChhh-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008183 256 RRVFDENLSVLNSIA-WNAMMAGYAQQGDQSTVLELFHLLEMRGFAP--D----EYSFLAVLTALCNAGLAGESEKWIER 328 (575)
Q Consensus 256 ~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 328 (575)
.+-+...+.-....+ ++..-.+|...|.+.+....-..-.+.|-.- + ...+..+-.++.+.++++.+..+|.+
T Consensus 244 ~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 244 IQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 666655343212333 3444445666666665555555444433210 0 11122233344455666667766665
Q ss_pred HHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 329 MKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP-FEPDA-AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 329 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
....+. .|+ ...+....+++.+..+... +.|+. .--..=...+.+.|++..|...|.+++..+|+|+.
T Consensus 324 aLte~R-t~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 324 ALTEHR-TPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred Hhhhhc-CHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 533321 222 1223334444444443331 33432 11222245677889999999999999999999999
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.|....-+|.+.|.+..|.+-.+...+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999999999998876665554
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00034 Score=63.16 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHH
Q 008183 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM--PFEPDAAVWRA 376 (575)
Q Consensus 299 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 376 (575)
..|+......+-.++...|+-+....+....... -..|......++....+.|++.+|...|++. +-.+|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 3444333355667777788888888877765322 2334556667899999999999999999998 34568999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+..+|-+.|+.++|...|.+..++.|.++..++.|.-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998877654
No 129
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.94 E-value=0.00013 Score=61.34 Aligned_cols=95 Identities=12% Similarity=0.000 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
....-.+...+...|++++|.++|+-. .+.| +..-|-.|...+...|++++|...|.++..++|+++.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444455666778899999999999988 4566 57888999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHHHHHHHhh
Q 008183 417 GVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 417 ~~g~~~~a~~~~~~m~~ 433 (575)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999997764
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.0037 Score=61.59 Aligned_cols=179 Identities=18% Similarity=0.097 Sum_probs=127.3
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLSV-LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL-AVLT 311 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~ 311 (575)
|+...+...+........-..+..++.. ..+ .....+.-....+...|++++|+..++.+... .||...|. ....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~ 348 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAK-RSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGD 348 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHH-HhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3444445544443333333333333332 222 33344444555667889999999999998875 45555544 4556
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~ 388 (575)
.+...++..+|.+.++.+. ...|+ ....-.+..+|.+.|++.+|..++++. ...-|+..|..|..+|...|+..
T Consensus 349 i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 349 ILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 7788999999999999885 34677 566677889999999999999999887 33346999999999999999988
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
++.... ...|.-.|+|++|...+...+++.
T Consensus 426 ~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 EALLAR-----------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHH-----------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 877654 455777899999999888877653
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=0.00016 Score=60.94 Aligned_cols=100 Identities=17% Similarity=0.294 Sum_probs=76.0
Q ss_pred CCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 008183 335 LEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411 (575)
Q Consensus 335 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 411 (575)
..|+ ......+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...+++.++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 345556667777788888888888776 3344 567777788888888888888888888888888888888888
Q ss_pred HHHHHhCCCchHHHHHHHHHhhC
Q 008183 412 ANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888777654
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00041 Score=68.67 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhccc
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 216 (575)
...+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|++++++.... .+-|...+..-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 34455666666778888888888887766666667777777777777888887777653 12244444555555666677
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC
Q 008183 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264 (575)
Q Consensus 217 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 264 (575)
.+.|..+.+++++.. +.+-.+|..|..+|.+.|+++.|+..++. ++
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs-~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNS-CP 295 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhc-Cc
Confidence 777777777766653 33445666677777777777777766665 44
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.90 E-value=0.0032 Score=67.53 Aligned_cols=142 Identities=9% Similarity=-0.000 Sum_probs=103.2
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHH-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY-CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
++..+-.|.....+.|++++|+.+++...+ +.||.. ....+...+.+.+.+++|....++..... +-+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 566777788888888888888888888876 466654 56667777788888888888888887764 44566667777
Q ss_pred HHHHccCCHHHHHHHHhhhCC-CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 244 DGYGKAGIVSDARRVFDENLS-VL-NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
.++.+.|++++|.++|++.+. .| +..+|..+..++-..|+.++|...|++..+. ..|....|+..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 778888888888888888553 22 3567777777788888888888888877665 334445555554
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.88 E-value=0.0048 Score=65.65 Aligned_cols=389 Identities=12% Similarity=0.020 Sum_probs=194.1
Q ss_pred HHHHHHHHHhhCC--CcccHHHHHHHHhHcCCChHHHHHHHccCCC---CChhhHHHHHHHHhcCch---HHHHHHHHhh
Q 008183 18 PRIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAHSNSPL---SLNIFLSMLR 89 (575)
Q Consensus 18 ~~~~~~~~~~~g~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---a~~~~~~m~~ 89 (575)
...+|..+....+ .=...|+.|-+.|+...+...|.+.|+..-+ .+..+|..+...|++..+ |..+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 3445555544444 3345788888888888888888888887653 455677788888888776 4444211111
Q ss_pred CCCCCcCCChhhHHHHHH--HHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcc
Q 008183 90 HPTLSFLPNQRTLASLFK--TCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV 167 (575)
Q Consensus 90 ~~~~~~~p~~~t~~~ll~--~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 167 (575)
. -+.-...++.+-. .+-..+ ++..+..-++...+.. +.|...|..|..+|..+|++..|.++|++...-++.
T Consensus 555 k----a~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 555 K----APAFACKENWVQRGPYYLEAH-NLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred h----chHHHHHhhhhhccccccCcc-chhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 1 1111222222222 223334 5555666666665554 557778888888999999999999999877664443
Q ss_pred hHHH---HHHHHHhCCCchHHHHHHHHhHHC------CCCcCHHHHHHHHHHHHhcccHHHHHHHHHH-------HHHhC
Q 008183 168 CYGA---MIVGFAQNSRLVDSLSVFADMRSS------DVGSTMYCVSGALRAAAELAAMEQCRVIHGH-------AVVSG 231 (575)
Q Consensus 168 ~~~~---li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-------~~~~g 231 (575)
++-. ....-+..|.+.+|+..+...... +..--..++.-+...+...|-..++..+++. .....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 3221 222345678888888888776432 1111112222222222222322222222222 22221
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChh--hHHHHHHH-HHHcCCh---H---HHHHHHHHHHHcCCCCC
Q 008183 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI--AWNAMMAG-YAQQGDQ---S---TVLELFHLLEMRGFAPD 302 (575)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~l~~~m~~~g~~p~ 302 (575)
...+...|-.+ .+|..+|-. .+ |+.+ .+..++.. .-..+.. + -+.+.+-.-.+ ...+
T Consensus 709 ~~~~~~~Wi~a----------sdac~~f~q-~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~ 774 (1238)
T KOG1127|consen 709 LQSDRLQWIVA----------SDACYIFSQ-EE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIH 774 (1238)
T ss_pred hhhhHHHHHHH----------hHHHHHHHH-hc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhc
Confidence 11122222111 223333333 22 2211 11111111 1111111 0 01111100000 1112
Q ss_pred HHHHHHHHHHHHh-------cC-CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CH
Q 008183 303 EYSFLAVLTALCN-------AG-LAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DA 371 (575)
Q Consensus 303 ~~t~~~ll~a~~~-------~g-~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 371 (575)
..++..+...|.+ .+ +...|...+.... .+.. +..+|+.|--+ +..|.+.-|...|-+- -..| ..
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV---~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV---SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH---HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccch
Confidence 3333333333222 11 1223444443331 2222 34555555443 5556666666655443 2233 46
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
.+|..+.-.+.+..|++.|...+.+...++|.|...|......-...|+.-++..+|..
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77777777777788888888888888888887777776666666666666666666553
No 135
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=1.6e-05 Score=47.41 Aligned_cols=31 Identities=29% Similarity=0.694 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV 197 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 197 (575)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888877663
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.00035 Score=69.13 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 008183 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAI 383 (575)
Q Consensus 306 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 383 (575)
..+|+..+...++++.|..+++++..+ .|+ ....++..+...++-.+|.+++++. ...| |......-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 334555556667777777777777433 244 3344666666677777777777665 2233 56666666677888
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.++++.|+.+.+++.+..|.+..+|..|..+|...|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988775
No 137
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.87 E-value=1.8e-05 Score=47.21 Aligned_cols=31 Identities=29% Similarity=0.722 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 299 (575)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.86 E-value=0.015 Score=63.26 Aligned_cols=235 Identities=12% Similarity=0.081 Sum_probs=128.6
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 008183 99 QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ 178 (575)
Q Consensus 99 ~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 178 (575)
...+..++..+...+ +++.+.++.+..++.. +.....|-.+...|.+.++.+++..+ .++.....
T Consensus 31 ~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 31 FKELDDLIDAYKSEN-LTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 345555666665666 6666666666544432 11222222222245555554444333 23333333
Q ss_pred CCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHH
Q 008183 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 258 (575)
..++.-...+...|.. ..-+...+-.+..+|.+.|+.+++..+++.+++.. +-|+.+.|.+...|+.. ++++|.++
T Consensus 96 ~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 3344333333333433 12233466667777888888888888888888876 66788888888888888 88888888
Q ss_pred HhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 008183 259 FDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY-SFLAVLTALCNAGLAGESEKWIERMKVRYKLEP 337 (575)
Q Consensus 259 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 337 (575)
+.+ .+.-|...+++.++.++|.++.... |+.+ -|..++ +.+....+..-
T Consensus 172 ~~K------------AV~~~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~----------------~ki~~~~~~~~ 221 (906)
T PRK14720 172 LKK------------AIYRFIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIE----------------RKVLGHREFTR 221 (906)
T ss_pred HHH------------HHHHHHhhhcchHHHHHHHHHHhcC--cccchHHHHHH----------------HHHHhhhccch
Confidence 877 3344677778888888888877652 2222 222222 22211112222
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSA 382 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 382 (575)
-+.++-.+-.-|-...+++++..+++.+ ...| |.....-|+..|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2334444445555666666666666655 3333 3444445555544
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0051 Score=55.75 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=94.9
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh----cc
Q 008183 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG----RA 352 (575)
Q Consensus 277 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~ 352 (575)
.|+..|++++|++..+... ..+....+ ...+.+..+.+-|.+.++.|. . + -+..+.+-|..++. -.
T Consensus 117 i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq-~--i-ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQ-Q--I-DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-c--c-chHHHHHHHHHHHHHHhccc
Confidence 3666677777776665511 11222222 122345566777777777773 2 1 23344444444443 34
Q ss_pred CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH-HHHHH
Q 008183 353 GRLEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV-AEVRK 429 (575)
Q Consensus 353 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~ 429 (575)
+.+.+|.-+|++| +..|+..+.+....++...|++++|+.+++.++..++.++.+...++-.-...|.-.++ .+.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5688888888888 36678888888888888889999999999999888888888877777777777765443 44555
Q ss_pred HHhh
Q 008183 430 VMKD 433 (575)
Q Consensus 430 ~m~~ 433 (575)
+++.
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 5543
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.69 E-value=0.0014 Score=55.07 Aligned_cols=88 Identities=8% Similarity=-0.038 Sum_probs=38.6
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChH
Q 008183 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQS 285 (575)
Q Consensus 208 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 285 (575)
...+...|+.++|.+.+..+...+ +.+...+..+...|.+.|++++|...|+..+. +.+...|..+...|...|+++
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence 333444444444444444444432 23344444444444444444444444444221 223334444444444444444
Q ss_pred HHHHHHHHHHH
Q 008183 286 TVLELFHLLEM 296 (575)
Q Consensus 286 ~A~~l~~~m~~ 296 (575)
+|+..|+...+
T Consensus 103 ~A~~~~~~al~ 113 (135)
T TIGR02552 103 SALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.67 E-value=0.079 Score=53.09 Aligned_cols=400 Identities=11% Similarity=0.090 Sum_probs=216.9
Q ss_pred HHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CC-ChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCC
Q 008183 25 ALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SP-NIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPN 98 (575)
Q Consensus 25 ~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~ 98 (575)
-++..+.|..+|+.||+-+... ..+++++.++++. .| ....|..-|.+-....+ ...+|.+....- .+
T Consensus 12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-----Ln 85 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-----LN 85 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----hh
Confidence 3344447889999999988776 9999999999986 34 45578888888777777 778888877643 34
Q ss_pred hhhHHHHHHHHhhchhhHHH----HHHHHHHHH-hhCCCC-chhHHHHHHHHH---------HhCCChHHHHHHHHhcCC
Q 008183 99 QRTLASLFKTCASLSHAFLF----GLSLHSLSL-KLSLHD-KPFCGSALVHFY---------SRFRSPDNAKKVFDEIRE 163 (575)
Q Consensus 99 ~~t~~~ll~~~~~~~~~~~~----a~~~~~~~~-~~g~~~-~~~~~~~li~~~---------~~~g~~~~A~~~f~~m~~ 163 (575)
...|..-|.-.-+..+.... ..+.++..+ +.|+.+ +-..|+..++.. ....+++..++++..+..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 55555555443333322222 223333333 345544 334566666543 344567778888888764
Q ss_pred -C---------CcchHHHHHHHH-------HhCCCchHHHHHHHHhHH--CCCCcCHHH---------------HHHHHH
Q 008183 164 -R---------DVVCYGAMIVGF-------AQNSRLVDSLSVFADMRS--SDVGSTMYC---------------VSGALR 209 (575)
Q Consensus 164 -~---------~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~ 209 (575)
| |-..|..=|+.. -+...+..|.+++++... .|+..+..+ |-.+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 2 222222212111 123345667777777643 333221111 222221
Q ss_pred HHHhcccHH---------HHHHHHHHH-HHhCCCCchhHHHH-----HHHHHHccCCH-------HHHHHHHhhhCC---
Q 008183 210 AAAELAAME---------QCRVIHGHA-VVSGLDRNVIVGTG-----LIDGYGKAGIV-------SDARRVFDENLS--- 264 (575)
Q Consensus 210 ~~~~~~~~~---------~a~~~~~~~-~~~g~~~~~~~~~~-----li~~~~~~g~~-------~~A~~~~~~~~~--- 264 (575)
- -+.+-+. ...-+|++. .-.++.|++....+ .-+.+...|+. +++.++++..+.
T Consensus 246 w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 246 W-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred H-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 1 1111110 011122221 22344444322111 12233334443 334444443221
Q ss_pred CCChhhHHHHHHHH---HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-Chh
Q 008183 265 VLNSIAWNAMMAGY---AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLE 340 (575)
Q Consensus 265 ~~~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 340 (575)
..+..+|..+..-- ......+.....++++...-..--..+|...++.-.+..-+..|+.+|.+.. +.+..+ ++.
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR-~~~r~~hhVf 403 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR-EDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh-hccCCcchhh
Confidence 22222333222210 0111244555566665543222223556677777777777888888888884 435455 677
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-CchhHHHHHHHH
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN--PY-DDSAYVIVANVL 415 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~ 415 (575)
++++++.-|| .++.+-|.++|+-- .--+| +.--...+.-+...++-..+..+|++.+... |+ ....|..++.--
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 7788887666 56778888888654 22233 4444555666667777788888888887752 22 224788888888
Q ss_pred HhCCCchHHHHHHHHHhh
Q 008183 416 SGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~ 433 (575)
..-|+.+.+.++-+++..
T Consensus 483 S~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 888888888887776654
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0076 Score=54.69 Aligned_cols=141 Identities=16% Similarity=0.069 Sum_probs=108.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCC
Q 008183 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFE 368 (575)
Q Consensus 289 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (575)
++.+.+.......+......-...|.+.++.++|.+..+.. -+......=+..+.+..+++-|.+.+++|.--
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34555555545555444444556689999999999987642 23444444556678889999999999999644
Q ss_pred CCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 369 PDAAVWRALLSFSAIH----GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 369 p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.+..|.+-|..++.+. +.+..|.-+|+++.+.-|+.+.+.+....++...|+|++|..+++....+..
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 5677777777777653 4689999999999998888888999999999999999999999999887643
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.0005 Score=53.07 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=71.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 008183 342 YTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419 (575)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 419 (575)
+..+...+...|++++|...+++. ...| +...+..+...+...+++++|.+.+++..+..|.+..++..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677788888888888776 3344 34667777788888888888888888888888877778888888888888
Q ss_pred CchHHHHHHHHHhh
Q 008183 420 RWDEVAEVRKVMKD 433 (575)
Q Consensus 420 ~~~~a~~~~~~m~~ 433 (575)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 144
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.61 E-value=0.019 Score=61.32 Aligned_cols=86 Identities=10% Similarity=0.125 Sum_probs=61.0
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 357 DAERIAMAM-PF-EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 357 ~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.|...+.+. .+ ..+..+|+.|.-. ..-|++.-|...|-+....+|.+..+|..+.-.+.+..+++.|...|...+.
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS- 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS- 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh-
Confidence 455555544 22 3457777776555 5557777777777777788888888888888888999999999999887765
Q ss_pred CCccCCceeEE
Q 008183 435 RVRKEGGRSWI 445 (575)
Q Consensus 435 ~~~~~~~~s~~ 445 (575)
+.|.....|+
T Consensus 879 -LdP~nl~~Wl 888 (1238)
T KOG1127|consen 879 -LDPLNLVQWL 888 (1238)
T ss_pred -cCchhhHHHH
Confidence 3444445565
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.60 E-value=0.0025 Score=54.38 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAMP-FEPDA----AVWRALLSFSAIHGKADM 389 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~g~~~~ 389 (575)
.++...+...++.+..+++-.| .....-.+...+...|++++|...|+... ..||. ...-.|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555533321110 01222223344555555555555555541 11221 223334455555566666
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
|+..++.. ...+..+..+..+.++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66555442 12222334555566666666666666666553
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.56 E-value=0.0016 Score=53.14 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSF 380 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 380 (575)
..+...+...|++++|...+..+.....-.| ....+..+...+.+.|++++|.+.|+.. ...|+ ..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3444445555666666666655533221111 0233444555566666666666666554 11222 3445556666
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
+...|+.++|...++++++..|+++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666677777777777777666665443
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.56 E-value=0.0013 Score=51.43 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCC-CcCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHhCCCCchhH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDV-GSTMYCVSGALRAAAELA--------AMEQCRVIHGHAVVSGLDRNVIV 238 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 238 (575)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334567777778999999999999999999 899999999999988753 34456788999999999999999
Q ss_pred HHHHHHHHHc
Q 008183 239 GTGLIDGYGK 248 (575)
Q Consensus 239 ~~~li~~~~~ 248 (575)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.035 Score=50.19 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=93.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHH
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 358 (575)
-..|++++|+++++.+.+.. +.|.+++-.=+-..-..|.--+|++-+...... +..|...|.-+.+.|...|++++|
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 35678888888888888775 446667766565556667777888877777544 467889999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCchh
Q 008183 359 ERIAMAM-PFEP-DAAVWRALLSFSAIH---GKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 359 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
.-.++++ -+.| +...+..+...+... .+.+.+.+.+.+.+++.|.+...
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 9999988 3456 455566666555443 46788899999999999865443
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.51 E-value=0.00013 Score=55.68 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=46.0
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHH
Q 008183 352 AGRLEDAERIAMAM-PFEP---DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427 (575)
Q Consensus 352 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 427 (575)
.|++++|..+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666665 1122 344454566666677777777777666 555555555555567777777777777777
Q ss_pred HHH
Q 008183 428 RKV 430 (575)
Q Consensus 428 ~~~ 430 (575)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 150
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.11 Score=50.43 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSA 382 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 382 (575)
..+.+..|.-|...|....|.++-.+. .+ |+...|-.-+.+|+..+++++-.++... +..++-|..++.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 345666677777889888888765444 44 8899999999999999999998887654 345688999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 383 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
+.|+..+|..+..++ .+..-+.+|.++|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888772 1245788999999999998775443
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.48 E-value=0.0077 Score=51.33 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=69.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAM 349 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 349 (575)
++..+ ..++...+...++.+.+....-. ......+...+...|++++|...|+..... .-.|+ ......|...+
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHH
Confidence 44444 36666667666776666532211 122333445566677777777777766433 22222 12333456666
Q ss_pred hccCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 350 GRAGRLEDAERIAMAMPFE-PDAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
...|++++|...++..+-. .....+......+...|+.++|...|+..
T Consensus 96 ~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777777777777665312 23445556666777777777777777654
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.48 E-value=0.0016 Score=53.18 Aligned_cols=96 Identities=19% Similarity=0.097 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---chhHHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYD---DSAYVIV 411 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 411 (575)
.++..+...+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667778889999999999999888 22343 4566778899999999999999999999988764 4578889
Q ss_pred HHHHHhCCCchHHHHHHHHHhhCC
Q 008183 412 ANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 153
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.43 E-value=0.17 Score=50.89 Aligned_cols=368 Identities=11% Similarity=0.073 Sum_probs=213.8
Q ss_pred CChhhHHHHHHHHhcCch--HHHHHHHHhhCCCCCcCC-ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHH
Q 008183 62 PNIVSWTALISAHSNSPL--SLNIFLSMLRHPTLSFLP-NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG 138 (575)
Q Consensus 62 ~~~~~~~~li~~~~~~g~--a~~~~~~m~~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 138 (575)
-|+.+|+.||+-+-...- +.+.++++.. ..| ....|..-+..-.+.. +++..+.+|...+..-+. ...|
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~~-----~FP~s~r~W~~yi~~El~sk-dfe~VEkLF~RCLvkvLn--lDLW 89 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLVN-----VFPSSPRAWKLYIERELASK-DFESVEKLFSRCLVKVLN--LDLW 89 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHhc-----cCCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhh--HhHH
Confidence 488999999998866644 9999999987 444 4567777788888888 999999999998876554 4455
Q ss_pred HHHHHHHHh-CCChHHH----HHHHHhcC------CCCcchHHHHHHH---------HHhCCCchHHHHHHHHhHHCCCC
Q 008183 139 SALVHFYSR-FRSPDNA----KKVFDEIR------ERDVVCYGAMIVG---------FAQNSRLVDSLSVFADMRSSDVG 198 (575)
Q Consensus 139 ~~li~~~~~-~g~~~~A----~~~f~~m~------~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~ 198 (575)
..-++.--+ .|+...+ .+.|+-.. -.+-..|+..+.- |..+.+++...++|+++....+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 555543332 2333332 22232221 1244456665542 44555677788888888753221
Q ss_pred c------CHHHHHHHHHHHH-------hcccHHHHHHHHHHHHH--hCCCCchhH---------------HHHHHHHHHc
Q 008183 199 S------TMYCVSGALRAAA-------ELAAMEQCRVIHGHAVV--SGLDRNVIV---------------GTGLIDGYGK 248 (575)
Q Consensus 199 p------~~~t~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~g~~~~~~~---------------~~~li~~~~~ 248 (575)
- |-.+|-.-++... +...+..|+++++++.. .|+..+..+ |-.+|.---.
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 1 2223322232221 23456667777776643 343322221 2222221111
Q ss_pred cCCH------H--HHHHHHhhhCC----CCChhh-HHHHH----HHHHHcCC-------hHHHHHHHHHHHHcCCCCCHH
Q 008183 249 AGIV------S--DARRVFDENLS----VLNSIA-WNAMM----AGYAQQGD-------QSTVLELFHLLEMRGFAPDEY 304 (575)
Q Consensus 249 ~g~~------~--~A~~~~~~~~~----~~~~~~-~~~li----~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~ 304 (575)
.+.- - ...=++++.+. .|++.- |...+ ..+...|+ -+++..+++.....-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 0 00000111000 111100 00000 11222333 345556665554432233444
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC---CCC-CHHHHHHH
Q 008183 305 SFLAVLTALCN---AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP---FEP-DAAVWRAL 377 (575)
Q Consensus 305 t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p-~~~~~~~l 377 (575)
+|..+..---. .+..+....++++......++|+ -+|-.++..-.|..-++.|..+|.+.+ ..+ ++...+++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 44433322111 11245556666666555555665 367788888888899999999999883 344 67788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccC
Q 008183 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 439 (575)
+.-++ .+|.+.|.++|+--+..-++++..-...++.+...++-+.+..+|++....++.++
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 87765 57889999999999988888877667788888999999999999999998866544
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.42 E-value=0.019 Score=55.12 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=67.1
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCHH
Q 008183 239 GTGLIDGYGKA-GIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-----PDEY 304 (575)
Q Consensus 239 ~~~li~~~~~~-g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~ 304 (575)
+..+...|-+. |++++|.+.|+++.. ... ...+..+...+.+.|++++|+++|++....-.. ++..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444556565 677777777766333 111 123444566677888888888888777654221 2221
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCC--hhHHHHHHHHHhc--cCChHHHHHHHHhCC
Q 008183 305 -SFLAVLTALCNAGLAGESEKWIERMKVRY-KLEPG--LEHYTCLISAMGR--AGRLEDAERIAMAMP 366 (575)
Q Consensus 305 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 366 (575)
.|...+-.+...|++..|...++...... ++..+ ......|+.++-. ...+++|..-|+.+.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 22233334555677878887777763221 22222 3445556666643 345666666676664
No 155
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.014 Score=52.60 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=94.1
Q ss_pred CCHHHHHHHHhhhCC-------CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHH
Q 008183 250 GIVSDARRVFDENLS-------VLNS-IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA-LCNAGLAG 320 (575)
Q Consensus 250 g~~~~A~~~~~~~~~-------~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~ 320 (575)
.+.++..+++.+++. .++. ..|.-++-+....|+.+.|...++++... + |...-...+=.. +-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 455666666655222 1111 12333444455566666666666666554 2 333222111111 23356666
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 321 ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 321 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
+|.++++.+..+. +.|..+|-.=+-..-..|+--+|.+-+.+. .+-.|...|.-|...|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6666666664331 223444444444444455555555544443 244566666666666666667777766666666
Q ss_pred hcCCCCchhHHHHHHHHHhCCC---chHHHHHHHHHhh
Q 008183 399 DINPYDDSAYVIVANVLSGVGR---WDEVAEVRKVMKD 433 (575)
Q Consensus 399 ~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~ 433 (575)
=..|.++..+..+.+.+...|- .+-|.+++.+-.+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6666666666666666554443 3334455554443
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.39 E-value=0.00054 Score=49.85 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC-CchHHHHHHHHHhh
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG-RWDEVAEVRKVMKD 433 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 433 (575)
++.+|..+...+...|++++|+..|++.++.+|.++.+|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999887654
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.35 E-value=0.022 Score=54.75 Aligned_cols=210 Identities=15% Similarity=0.116 Sum_probs=112.0
Q ss_pred ChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC---cC--HHHHHHHHHHHHhcccHHHHHHHH
Q 008183 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG---ST--MYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 150 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
++++|..+|++ ....|-..|++++|.+.|.+....-.+ +. ...|......+.+. +++.|.
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai--- 94 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI--- 94 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH---
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH---
Confidence 66666666554 456677778888888777776331100 00 01122222222111 333333
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHc----CC
Q 008183 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ-GDQSTVLELFHLLEMR----GF 299 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~ 299 (575)
..+...+..|.+.|++..|-+++.. +...|-.. |++++|++.|++..+. |
T Consensus 95 ------------~~~~~A~~~y~~~G~~~~aA~~~~~------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~- 149 (282)
T PF14938_consen 95 ------------ECYEKAIEIYREAGRFSQAAKCLKE------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG- 149 (282)
T ss_dssp ------------HHHHHHHHHHHHCT-HHHHHHHHHH------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred ------------HHHHHHHHHHHhcCcHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-
Confidence 3344456678888888888777777 55566666 8888888888876542 3
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-----CCh-hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-
Q 008183 300 APD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLE-----PGL-EHYTCLISAMGRAGRLEDAERIAMAM-PFEP- 369 (575)
Q Consensus 300 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-----p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 369 (575)
.+. ..++..+...+.+.|++++|.++|++.... .+. .+. ..|-..+-.+...|++..|.+.|++. ...|
T Consensus 150 ~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 150 SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 211 245666777788888888888888877433 221 122 12333344556678888888888775 2222
Q ss_pred ---C--HHHHHHHHHHHHHc--CChHHHHHHHHHHHhc
Q 008183 370 ---D--AAVWRALLSFSAIH--GKADMASKMGKRLIDI 400 (575)
Q Consensus 370 ---~--~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~ 400 (575)
+ ......|+.++-.. ..++.+..-|+.+.++
T Consensus 229 F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 229 FASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp STTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 2 33455566665432 2244444444444333
No 158
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.32 E-value=0.0031 Score=62.84 Aligned_cols=118 Identities=7% Similarity=-0.068 Sum_probs=66.5
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-C-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHH
Q 008183 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-R-----DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS 205 (575)
Q Consensus 132 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 205 (575)
+.+......+++......+++++..++..... | -..|..++|+.|.+.|..++++.++..=..-|+-||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444444455555555555555555544432 1 12234466666666666666666666666666666666666
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc
Q 008183 206 GALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA 249 (575)
Q Consensus 206 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 249 (575)
.+|..+.+.|++..|.++...|...+...+..++.--+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666665555445555554444444444
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.28 E-value=0.0032 Score=62.76 Aligned_cols=131 Identities=10% Similarity=-0.011 Sum_probs=102.8
Q ss_pred HHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhh--CCCCchhHHHHHHHHHHhCCChHHHHHHHHh
Q 008183 83 IFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL--SLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160 (575)
Q Consensus 83 ~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 160 (575)
++..|.+.-..+.+.+...+..++..+.... +++.+..++-..... ....-+.+..++|..|.+.|..+++..+++.
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~-~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKD-DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHh-HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC
Confidence 5555544321125667888888888888888 888888877776655 2233345667999999999999999999877
Q ss_pred cCC----CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhc
Q 008183 161 IRE----RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214 (575)
Q Consensus 161 m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 214 (575)
=.. ||..++|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 129 ~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 129 RLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 554 799999999999999999999999999998888888888888888887765
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.27 E-value=0.00079 Score=48.28 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=45.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+...+...|++++|...++++++..|.++.++..+..++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888888888888888888877653
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.27 E-value=0.0018 Score=64.33 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=84.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGK 386 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 386 (575)
...+...|+++.|...|.+... ..|+ ...|..+..+|.+.|++++|...+++. .+.| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4556778999999999998853 3554 678888888999999999999999887 5566 47788889999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 387 ADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 387 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
+++|...++++++++|.++.+...+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999988766555443
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.26 E-value=0.012 Score=61.07 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
..|.++.......|++++|...+++. .+.|+...|..+...+...|+.++|...++++..++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 34444444444445555555555544 3444555555555555555555555555555555555444
No 163
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.26 E-value=0.0039 Score=48.74 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhcCCCCChhH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAG--------LAGESEKWIERMKVRYKLEPGLEH 341 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 341 (575)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+...+++.| ...+++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDi-L~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDI-LSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH-HHhccCCcHHH
Confidence 34456677777999999999999999999 999999999999887642 344567778888 45578888888
Q ss_pred HHHHHHHHhc
Q 008183 342 YTCLISAMGR 351 (575)
Q Consensus 342 ~~~li~~~~~ 351 (575)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888876654
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.24 E-value=0.07 Score=54.47 Aligned_cols=230 Identities=13% Similarity=0.124 Sum_probs=117.5
Q ss_pred HHHHHHHHhhchhhHHHHHHH--HHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 008183 102 LASLFKTCASLSHAFLFGLSL--HSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQN 179 (575)
Q Consensus 102 ~~~ll~~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 179 (575)
|+..=++|.+.+ ++..-+-+ ++.+.+.|-.|+... +.+.++-.|.+.+|.++|. ++
T Consensus 601 f~~ARkAY~rVR-dl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~ 658 (1081)
T KOG1538|consen 601 FETARKAYIRVR-DLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RS 658 (1081)
T ss_pred hHHHHHHHHHHh-ccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------Hc
Confidence 444445555555 44333332 233455565566543 3455667788888888875 45
Q ss_pred CCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHH
Q 008183 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVF 259 (575)
Q Consensus 180 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 259 (575)
|.-..|+++|..|+-- -...-+...|..++-+.+.+.-.+. ..++.--.+...++...|+.++|..+.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh
Confidence 6667777777776431 1222333444444443333322211 111111123455666677777777665
Q ss_pred hhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh
Q 008183 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339 (575)
Q Consensus 260 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 339 (575)
-+ +|-.+-++++-+++... +..+...+..-+-+...+..|-++|..|- +
T Consensus 727 ~d-------------------~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~g-D------- 775 (1081)
T KOG1538|consen 727 GD-------------------HGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMG-D------- 775 (1081)
T ss_pred hc-------------------ccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhc-c-------
Confidence 44 22233333333333222 33344444444445556666777776661 1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHH-H----------HHHHHHHHHcCChHHHHHHHHHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAMP-FEPDAAV-W----------RALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-~----------~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
...++++....+++.+|..+-++.| +.||+.. | .-.-.+|.+.|+..+|.++++++.
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 1356666777777777777777764 3344321 1 112234555566666666666654
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.0096 Score=52.45 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=85.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 008183 267 NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYT 343 (575)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 343 (575)
....+..+...+...|++++|...|++..+....|+ ...+..+...+.+.|++++|...+.+... ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 445667777778888888888888888876543332 35677777778888888888888877643 3443 45556
Q ss_pred HHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 344 CLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
.+...|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666676666665554332221 112577888888888888866 5555555555544
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.0029 Score=55.85 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CCHHHH
Q 008183 264 SVLNSIAWNAMMAGYAQQ-----GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA----------------GLAGES 322 (575)
Q Consensus 264 ~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a 322 (575)
..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+-+. .+.+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 356667777777776643 66676777788888888888889999888877542 245678
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh
Q 008183 323 EKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 355 (575)
.+++++| +.+|+-||.+++..|++.+++.+..
T Consensus 123 i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 123 IDLLEQM-ENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHH-HHcCCCCcHHHHHHHHHHhccccHH
Confidence 8888888 7888888888888888888877653
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.22 E-value=0.42 Score=51.11 Aligned_cols=403 Identities=10% Similarity=0.100 Sum_probs=210.7
Q ss_pred ccHHHHHHHHHhhCCCcccHHHHHHHH--hHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHH
Q 008183 16 TDPRIVHARALKSSQADRSIYNNLITN--YSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSM 87 (575)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~li~~--~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m 87 (575)
..|.+..+.+.+.-+ + ..|...+.+ +.+.|+.++|..+++... ..|..+...+-..|.+.++ |+.+|++.
T Consensus 26 kkal~~~~kllkk~P-n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~ 103 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHP-N-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERA 103 (932)
T ss_pred HHHHHHHHHHHHHCC-C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344444444444322 2 223333333 346788888888887664 3466777777778877777 88888888
Q ss_pred hhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCC----------ChHHHHHH
Q 008183 88 LRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR----------SPDNAKKV 157 (575)
Q Consensus 88 ~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----------~~~~A~~~ 157 (575)
.. ..|+..-...+..++.+.+ ++..-.++--++.+ .++.+++.+=++++.+.+.- -+.-|.+.
T Consensus 104 ~~-----~~P~eell~~lFmayvR~~-~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 104 NQ-----KYPSEELLYHLFMAYVREK-SYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred Hh-----hCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 77 5677778888888888888 77666655555555 34555555555565555432 12345666
Q ss_pred HHhcCCCC--cch---HHHHHHHHHhCCCchHHHHHH-HHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008183 158 FDEIRERD--VVC---YGAMIVGFAQNSRLVDSLSVF-ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG 231 (575)
Q Consensus 158 f~~m~~~~--~~~---~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 231 (575)
++.+.+.+ ..+ .-.-...+-..|.+++|++++ ....+.-...+...-+--+..+...+++.+..++-.+++..|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66665533 111 111122334577788888888 333333333444555566667777788888888888887776
Q ss_pred CCCchhHHHHHHHHHH----------------ccCCHHHHHHHHhhhCCCCChhhHHHHHHHHH---HcCChHHHHHHHH
Q 008183 232 LDRNVIVGTGLIDGYG----------------KAGIVSDARRVFDENLSVLNSIAWNAMMAGYA---QQGDQSTVLELFH 292 (575)
Q Consensus 232 ~~~~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~l~~ 292 (575)
-. | |...++.+. ..+.++...+..++.+....-..|-+-+.++. .-|+.+++...|-
T Consensus 257 ~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 257 ND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred Cc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 22 2 333333222 22233333333333222212223333333333 3466666554442
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh-------HHHHHHHHHhccCCh-----HHHHH
Q 008183 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE-------HYTCLISAMGRAGRL-----EDAER 360 (575)
Q Consensus 293 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~~ 360 (575)
+- -|-.| .|..=+..|...=..+.-..++..... -.++.. -+.+.+..-.-.|.+ +.-..
T Consensus 333 ~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 333 KK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 21 12222 111111111111122222222222210 011100 011111111111211 11111
Q ss_pred HHHhC------C------CCCC---------HHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 361 IAMAM------P------FEPD---------AAVWRALLSFSAIHGKA---DMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 361 ~~~~m------~------~~p~---------~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
++++. | +-|. ..+-+.|+..+.+.++. -+|.-+++......|.|..+-..|+.+|.
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~ 484 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYS 484 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 11111 1 1121 22456777888887764 45566667777777888888888889998
Q ss_pred hCCCchHHHHHHHHHhhCCCccC
Q 008183 417 GVGRWDEVAEVRKVMKDRRVRKE 439 (575)
Q Consensus 417 ~~g~~~~a~~~~~~m~~~~~~~~ 439 (575)
-.|-+..|.++++.|.-+.|..+
T Consensus 485 ~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 485 YLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HhcCChhHHHHHHhcchHHhhhc
Confidence 88999999888888876666544
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.019 Score=54.98 Aligned_cols=134 Identities=13% Similarity=0.229 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
.+|-.++...-+.+..+.|..+|.+..+.+ ...+.....+++. +...++.+.|..+|+.....+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 357777888888888888888888887543 2333333333332 333577788999999886653 456788889999
Q ss_pred HHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 348 AMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+++...++.+++.+.-|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 32333 35899999999999999999999999998877643
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.16 E-value=0.005 Score=54.24 Aligned_cols=81 Identities=19% Similarity=0.127 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
..+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 44555666666677777777776655 22222 35677777777888888888888888888888777777777777
Q ss_pred HHhCCC
Q 008183 415 LSGVGR 420 (575)
Q Consensus 415 ~~~~g~ 420 (575)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 777665
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.14 E-value=0.0039 Score=54.74 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
...|..+...+...|++++|...|++. .+.|+ ..+|..+...+...|++++|...++++++..|.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 456667777777889999998888876 23332 3578888899999999999999999999999888888888888
Q ss_pred HHH-------hCCCchHHHHHHHHH
Q 008183 414 VLS-------GVGRWDEVAEVRKVM 431 (575)
Q Consensus 414 ~~~-------~~g~~~~a~~~~~~m 431 (575)
+|. ..|++++|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 778888766665543
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.0082 Score=59.63 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=80.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRA 352 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 352 (575)
-...+...|++++|++.|++..+... -+...|..+..++...|++++|...++.... +.|+ ...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 34567789999999999999998643 3667788888899999999999999998843 4564 67888899999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHH
Q 008183 353 GRLEDAERIAMAM-PFEPDAAVWRALL 378 (575)
Q Consensus 353 g~~~~A~~~~~~m-~~~p~~~~~~~ll 378 (575)
|++++|...|++. .+.|+......++
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999887 5666644444444
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.11 E-value=0.002 Score=46.10 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=49.0
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 345 LISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 445677889999999999887 4456 477888888999999999999999999999988764
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.08 E-value=0.00085 Score=48.59 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=43.2
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...|++++|.+.++++.+..|.+..++..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888888888877654
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.06 E-value=0.0078 Score=46.12 Aligned_cols=22 Identities=5% Similarity=0.001 Sum_probs=9.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhH
Q 008183 172 MIVGFAQNSRLVDSLSVFADMR 193 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~ 193 (575)
+...+...|++++|+..|++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~ 27 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKAL 27 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHH
Confidence 3334444444444444444443
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.04 E-value=0.018 Score=55.17 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHH-HHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA-AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 246 (575)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554321 1112222222222 11233444455555555443 344555555555555
Q ss_pred HccCCHHHHHHHHhhhCCC-C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 247 GKAGIVSDARRVFDENLSV-L----NSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 247 ~~~g~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
.+.|+.+.|+.+|++.+.. + ....|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555553331 1 112344444444444444444444444433
No 176
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.00 E-value=0.42 Score=47.12 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=56.1
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 360 RIAMAMPFEP----DAAVWRALLSF--SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 360 ~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.++++.++.| +...-|.|..| +..+|++.++.-.-..+.+..| ++.+|..++-......++++|..++..+.
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3445556555 33444555544 4568999999999999999999 88899999999999999999999998764
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.012 Score=54.72 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=86.2
Q ss_pred CC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCchhHH
Q 008183 336 EP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIH---GKADMASKMGKRLIDINPYDDSAYV 409 (575)
Q Consensus 336 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 409 (575)
.| |...|-.|...|.+.|+++.|..-|.+. .+.| ++..+..+..++... .+..++..++++++..+|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 5899999999999999999999999887 4444 477777777666543 3467889999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 410 IVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.|...+...|++.+|...++.|.+...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998654
No 178
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.98 E-value=0.38 Score=46.43 Aligned_cols=283 Identities=17% Similarity=0.124 Sum_probs=178.0
Q ss_pred HHHHHHHHH--hCCChHHHHHHHHhcCC---CCcchHHHHHHH--HHhCCCchHHHHHHHHhHHCCCCcCHH--HHHHHH
Q 008183 138 GSALVHFYS--RFRSPDNAKKVFDEIRE---RDVVCYGAMIVG--FAQNSRLVDSLSVFADMRSSDVGSTMY--CVSGAL 208 (575)
Q Consensus 138 ~~~li~~~~--~~g~~~~A~~~f~~m~~---~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll 208 (575)
|.+|-.++. -.|+-..|.++-.+... .|....--++.+ -.-.|+++.|.+-|+.|... |... -+..+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 455555444 45788888887765442 455555555543 34569999999999999652 2221 223333
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC----CCChh--hHHHHHHHHH---
Q 008183 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS----VLNSI--AWNAMMAGYA--- 279 (575)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~--~~~~li~~~~--- 279 (575)
-...+.|+.+.|.++-+..-..- +.-.....+.+...+..|+++.|+++++.... ++++. .-..|+.+-+
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 34456788888888777665542 23356778889999999999999999986222 34442 2233444322
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHH
Q 008183 280 QQGDQSTVLELFHLLEMRGFAPDEYSF-LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDA 358 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 358 (575)
-.-++..|...-.+..+ +.||.+-- ..-..++.+.|++.++-.+++.+ +...|....+...+ +.+.|+....
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a---WK~ePHP~ia~lY~--~ar~gdta~d 313 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA---WKAEPHPDIALLYV--RARSGDTALD 313 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH---HhcCCChHHHHHHH--HhcCCCcHHH
Confidence 23345566655444443 55665432 23456778899999999999876 33455554443333 4455653222
Q ss_pred --HH--HHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHh
Q 008183 359 --ER--IAMAMPFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV-GRWDEVAEVRKVMK 432 (575)
Q Consensus 359 --~~--~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~ 432 (575)
.+ -++. ++|| ..+--.+..+-...|++..|..-.+......|. .+.|..|.++-... |+-.++...+.+-.
T Consensus 314 RlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 11 1233 3554 677777788888899999998888888888774 46788888876554 88888887776655
Q ss_pred hC
Q 008183 433 DR 434 (575)
Q Consensus 433 ~~ 434 (575)
..
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 43
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.98 E-value=0.0023 Score=48.64 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=46.6
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHH
Q 008183 281 QGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDA 358 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 358 (575)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++.. ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677777777777766533 223444444667777777777777777652 22232 23333446666777777777
Q ss_pred HHHHHh
Q 008183 359 ERIAMA 364 (575)
Q Consensus 359 ~~~~~~ 364 (575)
.+.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.0084 Score=55.52 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=63.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 389 (575)
..+.+++++|...|.+.+ .+.|+ ...|..=..+|++.|.++.|.+-.+.. .+.|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345577777777777653 34554 445555566777777777777655544 45564 6777788888888888888
Q ss_pred HHHHHHHHHhcCCCCchh
Q 008183 390 ASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~ 407 (575)
|++.|++.++++|.+...
T Consensus 168 A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHhhhccCCCcHHH
Confidence 888888888888877643
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.96 E-value=0.0027 Score=58.66 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=77.6
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHH
Q 008183 348 AMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 425 (575)
-+.+.+++++|...|.+. .+.| |++-|..=..+|.+.|.++.|.+-.+..+.++|....+|..|..+|...|++++|.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 356789999999999887 6776 68888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 008183 426 EVRKVMKD 433 (575)
Q Consensus 426 ~~~~~m~~ 433 (575)
+.|++..+
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 99887654
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.95 E-value=0.21 Score=46.58 Aligned_cols=53 Identities=8% Similarity=-0.061 Sum_probs=33.4
Q ss_pred HHHHhCCChHHHHHHHHhcCC--CCc-ch---HHHHHHHHHhCCCchHHHHHHHHhHHC
Q 008183 143 HFYSRFRSPDNAKKVFDEIRE--RDV-VC---YGAMIVGFAQNSRLVDSLSVFADMRSS 195 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 195 (575)
..+.+.|++++|.+.|+.+.. |+. .. .-.+..+|.+.+++++|...|++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334456777777777777754 222 11 123456667777788888777777664
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0028 Score=46.63 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=49.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..|.+.++++.|.++++++++.+|.++..+.....+|.+.|++++|...++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567788889999999999999999888888889999999999999999988887654
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.90 E-value=0.0079 Score=53.23 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=71.7
Q ss_pred HHHHHHhc--CCCCcchHHHHHHHHHhC-----CCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhc------------
Q 008183 154 AKKVFDEI--RERDVVCYGAMIVGFAQN-----SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL------------ 214 (575)
Q Consensus 154 A~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------ 214 (575)
-...|+.. ..+|..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34455555 346777777777777654 55566666777788888888888888888765331
Q ss_pred ----ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC
Q 008183 215 ----AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI 251 (575)
Q Consensus 215 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 251 (575)
.+-+.|.+++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3556788899999999999999999999998887664
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=96.84 E-value=0.0099 Score=50.39 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=76.0
Q ss_pred HHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCch
Q 008183 345 LISAMGRAGRLEDAERIAMAMP-FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 422 (575)
...-+-..|++++|..+|+-+- ..| +..-|..|...+...++++.|...|.....+++.|+..+......|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3344567899999999998772 233 56678888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 008183 423 EVAEVRKVMKD 433 (575)
Q Consensus 423 ~a~~~~~~m~~ 433 (575)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998776
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.83 E-value=0.01 Score=57.12 Aligned_cols=257 Identities=12% Similarity=0.025 Sum_probs=148.3
Q ss_pred HHhCCCchHHHHHHHHhHHCCCC---cCHHHHHHHHHHHHhcccHHHHHHHHHHHH--H--hCCC-CchhHHHHHHHHHH
Q 008183 176 FAQNSRLVDSLSVFADMRSSDVG---STMYCVSGALRAAAELAAMEQCRVIHGHAV--V--SGLD-RNVIVGTGLIDGYG 247 (575)
Q Consensus 176 ~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~li~~~~ 247 (575)
+++.|+....+.+|+...+.|.. .=..+|.-+-++|.-.+++++|.++|..=+ . .|-. -.......|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 56667777777777776665522 112345555666666677777777654321 1 1100 01122223444444
Q ss_pred ccCCHHHHHHHHhhhCC--------CCChhhHHHHHHHHHHcCC--------------------hHHHHHHHHHH----H
Q 008183 248 KAGIVSDARRVFDENLS--------VLNSIAWNAMMAGYAQQGD--------------------QSTVLELFHLL----E 295 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~--------~~~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m----~ 295 (575)
-.|.+++|.-.-.+-+. ......+..+...|...|+ ++.|.+.|.+= .
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655543322111 0112334445555544442 23444444332 2
Q ss_pred HcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH---HHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-----
Q 008183 296 MRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERM---KVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM----- 365 (575)
Q Consensus 296 ~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----- 365 (575)
+.|-. .-...|..|-..|.-.|+++.|...++.- ..++|-.. ....+..|...+.-.|+++.|.+.|+..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 22211 11234666666666778999998876532 22333222 2467778888888899999999888765
Q ss_pred --C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cC--CCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 366 --P-FEPDAAVWRALLSFSAIHGKADMASKMGKRLID----IN--PYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 366 --~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+ -.....+.-+|...|.-..+++.|+.++.+-+. ++ .....+|.+|.++|...|..++|....+.-.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 122355667888888888889999988877553 22 2244688999999999999999988766544
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.57 Score=45.50 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=84.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 317 (575)
+.+.-|.-+...|+...|.++..+ ..-||-.-|-..+.+|+..++|++-.++... .- .++-|..++.+|...|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~-Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE-FKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCC
Confidence 344456666778899999999888 8889999999999999999999887775432 12 3477888899999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
...+|..+...+ .+..-+.+|.++|++.+|.+.--+.
T Consensus 252 ~~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 252 NKKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CHHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999988877643 2256678889999999987765543
No 188
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.045 Score=52.93 Aligned_cols=160 Identities=12% Similarity=0.031 Sum_probs=112.3
Q ss_pred hhHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHH-
Q 008183 269 IAWNAM-MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA--LCNAGLAGESEKWIERMKVRYKLEPGLEHYTC- 344 (575)
Q Consensus 269 ~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~- 344 (575)
.+|-.+ ..++...|+.++|.+.-....+... ...+...+++ +.-.++.+.+...|++-. .+.|+-..-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 344433 2356778888888887766665421 1122223332 334677888888887552 45565322111
Q ss_pred ------------HHHHHhccCChHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 345 ------------LISAMGRAGRLEDAERIAMAM-P-----FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 345 ------------li~~~~~~g~~~~A~~~~~~m-~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
=.....+.|++.+|.+.|.+. . .+|++..|.....+..+.|+.++|+.-.++..+++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 122345779999999999877 3 3455667777778888999999999999999999998888
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+|..-.+++...++|++|.+-+++..+.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888889999999999999999887654
No 189
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=1 Score=47.36 Aligned_cols=315 Identities=14% Similarity=0.067 Sum_probs=177.5
Q ss_pred cCCChhhHH-----HHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCCh---HHHHHHHHhcCC--C
Q 008183 95 FLPNQRTLA-----SLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP---DNAKKVFDEIRE--R 164 (575)
Q Consensus 95 ~~p~~~t~~-----~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~--~ 164 (575)
++.+..-|. .++..+...+ .+..|.|+-..+-..-... ..++.....-+.+..+. +-+..+=+++.. .
T Consensus 428 IplT~~qy~~l~~~~vi~Rl~~r~-~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 428 IPLTHEQYRHLSEEVVIDRLVDRH-LYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred ccccHHHHhhhchhhhhHHHHhcc-hhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 665555444 3556666666 7777777766653222122 56777777777776432 334444445554 4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC----cCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---------
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVG----STMYCVSGALRAAAELAAMEQCRVIHGHAVVSG--------- 231 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--------- 231 (575)
.-++|..+.+--.+.|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-++.+.-
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888899999998887653332211 122345566777778888887777766654431
Q ss_pred --CCCchhHHHHHHH---------HHHccCCHHHHHHHHhh-hC-C----CCChhhHHHHHHHHHHcCChH---------
Q 008183 232 --LDRNVIVGTGLID---------GYGKAGIVSDARRVFDE-NL-S----VLNSIAWNAMMAGYAQQGDQS--------- 285 (575)
Q Consensus 232 --~~~~~~~~~~li~---------~~~~~g~~~~A~~~~~~-~~-~----~~~~~~~~~li~~~~~~g~~~--------- 285 (575)
.+.....|.-++. .|-. ++-..+...|.- .. . .+-..........+.+.....
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 1111122221111 1111 111111111110 00 0 011111222233344433311
Q ss_pred -HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 008183 286 -TVLELFHLLEM-RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 286 -~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
+-+.+.+.+.. .|..-...|.+--+.-+...|.-.+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 11222222221 2333444556666666777788888888765552 4787888778888888888888888777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 008183 364 AMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428 (575)
Q Consensus 364 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 428 (575)
.+. .+.-|.-+..+|.+.|+.++|.+++-+...+. -...+|.+.|++.+|.++-
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 663 14556667888888888888888776643221 4678888888888887764
No 190
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.69 E-value=0.05 Score=45.98 Aligned_cols=94 Identities=7% Similarity=-0.106 Sum_probs=61.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENL--SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
.-.+..-+...|++++|.++|+-.. .+.+..-|-.|...+-..|++++|+..|.......+ -|...+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3344455566777777777777522 244556677777777777777777777777766543 3556666666777777
Q ss_pred CCHHHHHHHHHHHHHhc
Q 008183 317 GLAGESEKWIERMKVRY 333 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~ 333 (575)
|+.+.|++.|+......
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 77777777777664443
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.65 E-value=0.078 Score=55.24 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=93.4
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc--------CChHHHHHHHH
Q 008183 298 GFAPDEYSFLAVLTALCNA-----GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRA--------GRLEDAERIAM 363 (575)
Q Consensus 298 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 363 (575)
+.+.|...|...+.+.... +..+.|..+|++.. .+.|+ ...|..+..+|... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456667777777775432 23667888887764 34676 44454443333221 12334444444
Q ss_pred hC---C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 364 AM---P-FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 364 ~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+. + ...+...|..+.-.....|++++|...++++++++| +..+|..+...|...|+.++|...+++....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 42 1 233567888887777788999999999999999999 56799999999999999999999998876544
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=0.21 Score=51.69 Aligned_cols=249 Identities=12% Similarity=0.037 Sum_probs=152.1
Q ss_pred hHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH-CCCCcCH--------HHHHHHHHHHHhcccHHHHH
Q 008183 151 PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTM--------YCVSGALRAAAELAAMEQCR 221 (575)
Q Consensus 151 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~--------~t~~~ll~~~~~~~~~~~a~ 221 (575)
+++|.+..+. .|....|..+...-.+.-.++-|...|-+... .|++.-. ..-..-+ .+--|.+++|+
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhh
Confidence 3444444443 24455676666655555555666655554422 1221110 0000111 12247888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL----NSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
++|-.+-+.. ..|.++.+.|++-...++++. -. .. -..+|+.+...++....|++|.+.|..-..
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~-g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN-GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8887765543 357888899999999988876 33 11 135788888888888888888888765322
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHH
Q 008183 297 RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRA 376 (575)
Q Consensus 297 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 376 (575)
. ...+.++.+..++++-+.+...+ +-+....-.+.+++.+.|.-++|.+.|-+-+ .|. .
T Consensus 825 ~---------e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk-----a 883 (1189)
T KOG2041|consen 825 T---------ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK-----A 883 (1189)
T ss_pred h---------HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-----H
Confidence 1 12455666666666555544433 3456667788899999999999999888775 332 3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCC-----------CchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPY-----------DDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.+..|...+++.+|.++.++..-.... ...-..--|..+.++|+.-+|.+++.+|.++
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 445667777777777766543210000 0001123567888999999999998888654
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.63 E-value=0.0048 Score=44.73 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHG-KADMASKMGKRLIDINP 402 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 402 (575)
...|..+...+...|++++|+..|++. .+.| +...|..+..++...| ++++|.+.+++.++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456677777778888888888887776 4455 3777888888888888 68888888888888776
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.62 E-value=0.0026 Score=45.96 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=23.0
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 352 AGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 352 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
.|++++|.++|+++ ...| +...+..+..+|...|++++|..+++++....|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444444444443 1222 34444444444444444444444444444444443
No 195
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.57 E-value=0.56 Score=46.10 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=59.9
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCCCC-Ch--h-h---HHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLSVL-NS--I-A---WNAMMAGYAQ---QGDQSTVLELFHLLEMRGFAPDEYSFLAV 309 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~--~-~---~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 309 (575)
-.++-.|....+++...++++. ++.. +. . + --...-++.+ .|+.++|++++..+......++..||..+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~-l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVET-LEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHH-hhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3455568888899999999988 6532 11 1 1 1122334556 78999999999886666667777788777
Q ss_pred HHHHHh---------cCCHHHHHHHHHHHHHhcCCCCCh
Q 008183 310 LTALCN---------AGLAGESEKWIERMKVRYKLEPGL 339 (575)
Q Consensus 310 l~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~ 339 (575)
...|-. ...+++|...|. +.+.+.|+.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~---kgFe~~~~~ 259 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYR---KGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHH---HHHcCCccc
Confidence 666532 123455555555 334455553
No 196
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.57 E-value=0.056 Score=47.31 Aligned_cols=64 Identities=6% Similarity=-0.026 Sum_probs=34.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC--HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST--MYCVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...+....+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555556666666666666666654322221 134555555555556666666665555543
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.55 E-value=0.44 Score=41.15 Aligned_cols=132 Identities=17% Similarity=0.094 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC-CCC---CHHHH
Q 008183 299 FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP-FEP---DAAVW 374 (575)
Q Consensus 299 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~ 374 (575)
..|+...-..|..+....|+..+|...|++. ..--+.-|....-.+..+....+++.+|...+++.. ..| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qa-lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQA-LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHH-hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666677788888888888888888876 332233456666777777778888888888887762 112 23334
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
-.+...+...|+...|+..|+.++..-|. +..-.....++.++|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45667788889999999999998887763 3444455677888888877765544443
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.55 E-value=0.0076 Score=51.45 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh-----hCCCccCC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK-----DRRVRKEG 440 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 440 (575)
.+...++..+...|++++|..++++++..+|.+...|..++.+|...|+..+|.++++.+. +-|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4556677788889999999999999999999999999999999999999999999998875 35776544
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.51 E-value=0.12 Score=41.97 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=63.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHh
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMG 350 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 350 (575)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..++++...++.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44567788999999999999988887655 34566777888889999999999988855431111 1222223344677
Q ss_pred ccCChHHHHHHHHh
Q 008183 351 RAGRLEDAERIAMA 364 (575)
Q Consensus 351 ~~g~~~~A~~~~~~ 364 (575)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888877644
No 200
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=1.3 Score=46.65 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=51.8
Q ss_pred HHHHHHHhHcCCChHHHHHHHccCCCCC---hhhHHHHHHHHhcCch--HHHHHHHHhhCCCCCcCCChhhHHHHHHHHh
Q 008183 36 YNNLITNYSKSNLLSYSLRLFNHIPSPN---IVSWTALISAHSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCA 110 (575)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~ 110 (575)
-..+|+-+...+.+..|.++-..+..|. ...|.....-+.+..+ -.++++.+.+.-+. ..-...+|..+.+...
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KLTPGISYAAIARRAY 518 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cCCCceeHHHHHHHHH
Confidence 3456777777888888888888877665 3334444444444433 33333333332110 1134467777777777
Q ss_pred hchhhHHHHHHHHHH
Q 008183 111 SLSHAFLFGLSLHSL 125 (575)
Q Consensus 111 ~~~~~~~~a~~~~~~ 125 (575)
..| .++.+..+.+.
T Consensus 519 ~~G-R~~LA~kLle~ 532 (829)
T KOG2280|consen 519 QEG-RFELARKLLEL 532 (829)
T ss_pred hcC-cHHHHHHHHhc
Confidence 777 77777777654
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.36 E-value=0.13 Score=41.68 Aligned_cols=59 Identities=5% Similarity=0.081 Sum_probs=34.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCcCH--HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTM--YCVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++.....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555667777777777777666655432 23444555555666666666666655543
No 202
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.34 E-value=0.013 Score=47.98 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 008183 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349 (575)
Q Consensus 298 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 349 (575)
...|+..+..+++.+++..+++..|.++.+.....++++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4678888888888888888888888888888888888877788888877643
No 203
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.34 E-value=1.2 Score=49.36 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=92.1
Q ss_pred CChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 008183 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228 (575)
Q Consensus 149 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 228 (575)
+++++|+.-+.++. ...|.-.+.---++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 34455555444443 223333344334455555555543 46666665555554331 11
Q ss_pred HhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--H
Q 008183 229 VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS--F 306 (575)
Q Consensus 229 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~ 306 (575)
+. ..|+-..-+|.++|+.++|.+.+.. .|+|++|+.+-.+|... -|... -
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~~~-------------------~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAYKE-------------------CGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHHHH-------------------hccHHHHHHHHHhhcCC---HHHHHHHH
Confidence 11 1223344567788888888777766 78888888887776532 12222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (575)
..|.+-+...+++-+|-++..+... .| .-.+..|+++..+++|.++....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 4566777788888888887776632 22 344567788888888888776653
No 204
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.31 E-value=0.0031 Score=38.20 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhCCCchHHH
Q 008183 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 394 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 425 (575)
++++++++|.++.+|..|...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.30 E-value=0.034 Score=52.28 Aligned_cols=92 Identities=18% Similarity=0.137 Sum_probs=49.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc---hhHHHHHH
Q 008183 342 YTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD---SAYVIVAN 413 (575)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 413 (575)
|..-+..+.+.|++++|...|+.. ...|+ ...+--+..+|...|++++|...|+.+++..|.++ .++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444455666666555554 11222 23444455666666666666666666666555433 23444455
Q ss_pred HHHhCCCchHHHHHHHHHhh
Q 008183 414 VLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~ 433 (575)
.|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666554
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.29 E-value=0.65 Score=40.17 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=53.1
Q ss_pred CcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC----CChhhHHH
Q 008183 198 GSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV----LNSIAWNA 273 (575)
Q Consensus 198 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~ 273 (575)
.|+...-..+..+....|+..+|...|.+....-+.-|..+.-.+.++....+++..|...++..++. .+..+-..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555555666666666666666555445555555555566666666666666666553331 11222333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
+...|...|.+.+|..-|+.....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 444455555555555555555543
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.24 Score=45.11 Aligned_cols=167 Identities=11% Similarity=0.008 Sum_probs=113.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCC----------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRER----------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 207 (575)
++.|+..|.-..-+++-...|+.-..| -...-+.++..+.-.|.+.-.+.++++..+...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 566776666555555555555543321 2234466777777788888889999998887666677778888
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHH-----HHHHHccCCHHHHHHHHhhhCC---CCChhhHHHHHHHHH
Q 008183 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGL-----IDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYA 279 (575)
Q Consensus 208 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~ 279 (575)
.+..-+.|+.+.|...++...+..-..|....+.+ ...|.-.+++..|...|++ +. +.|.+.-|.=.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~-i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE-ILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh-ccccCCCchhhhchHHHHHH
Confidence 88888899999999888877664334444434333 3456667788888888877 44 445566665555566
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 008183 280 QQGDQSTVLELFHLLEMRGFAPDEYSFL 307 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 307 (575)
-.|+..+|++..+.|... .|...+-+
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 678888899888888875 44444433
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.21 E-value=0.0094 Score=38.66 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
.+|..+..+|...|++++|+++++++++..|+|+.++..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999888776653
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.4 Score=43.75 Aligned_cols=166 Identities=10% Similarity=-0.041 Sum_probs=106.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC-CCCh--------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS-VLNS--------IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 309 (575)
+++|+..|.-..-+++-...|+.-.. +..+ ..-+.++..+.-.|.+.-...++++..+...+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 44555555444444444444443111 2222 23456667777788888888999999887766777888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHhccCChHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT-----CLISAMGRAGRLEDAERIAMAMPFE--PDAAVWRALLSFSA 382 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~ 382 (575)
.+.-.+.|+.+.|..+|+...+..+ ..+....+ .....|.-++++.+|...|.+.+.. .|+...|.=.-...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888899999999999997743322 23333333 3334456677888888888877422 23444444333344
Q ss_pred HcCChHHHHHHHHHHHhcCCCCc
Q 008183 383 IHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 383 ~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
-.|+...|.+..+.+.+..|...
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCccc
Confidence 46788888888888888887543
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.02 E-value=0.031 Score=55.48 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDA----AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|...++++++..+. .|..+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHHh
Confidence 566667777777777777777777664 556652 34777777777777777777777777775321 1211111
Q ss_pred --HHHhCCCchHHHHHHHHHhhCCC
Q 008183 414 --VLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 414 --~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.+....+.++..++++.....|.
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCC
Confidence 11122233455666666666554
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.99 E-value=0.026 Score=41.28 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=49.4
Q ss_pred HHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
..|.+.+++++|.++++.+ .+.| ++..|......+...|++++|.+.+++.++..|.++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4677888899998888887 4455 47777778888889999999999999999998877654
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.98 E-value=0.17 Score=47.60 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHhccCChHHHHHHHHhC----CCCC-CHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL----EHYTCLISAMGRAGRLEDAERIAMAM----PFEP-DAAVWR 375 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~ 375 (575)
.|...+....+.|++++|...|+.+...+ |+. ..+--+...|...|++++|...|+.+ |..| ....+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444445577777777777765443 332 35556666777777777777777766 2222 244455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 376 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
.+...+...|+.+.|..+++++++..|.+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5566677788888888888888888886643
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.97 E-value=1.4 Score=41.11 Aligned_cols=66 Identities=6% Similarity=-0.118 Sum_probs=42.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHH--HHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMY--CVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
+...+-.....+.+.|++++|++.|+++...-..+... ..-.+..++.+.++++.|...++..++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33334345555677899999999999987743222111 1134456667788888888888887765
No 214
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.91 E-value=0.73 Score=37.41 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=86.7
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
+.-.|..++..++..+..... +..-++.+|--....-+-+-..+.++.+-.-+ |. ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcchHH
Confidence 345677777788877776542 44455555544444445555556665552222 21 34556666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 358 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
....+-.++ .+.......+......|+-+.-.+++..+.+.+..+|....-+..+|.+.|+..++.+++++..++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 655555553 334555667788889999999999999988766668888999999999999999999999999999985
No 215
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=1.5 Score=39.82 Aligned_cols=85 Identities=12% Similarity=0.027 Sum_probs=50.7
Q ss_pred HHHHHHHhccCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCCchhHHH
Q 008183 343 TCLISAMGRAGRLEDAERIAMAMP-------FEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN----PYDDSAYVI 410 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~~ 410 (575)
......|.+..++++|-..|.+-+ --|+ -..|.+.|-.+.-..|+..|++.++.-.+.. |.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334445666677777666555442 1222 2334555556666678888888888765533 556667777
Q ss_pred HHHHHHhCCCchHHHHHH
Q 008183 411 VANVLSGVGRWDEVAEVR 428 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~ 428 (575)
|+.+|- .|+.+++.+++
T Consensus 234 LL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhc-cCCHHHHHHHH
Confidence 777774 56667666554
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.66 E-value=0.14 Score=42.12 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008183 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381 (575)
Q Consensus 302 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 381 (575)
|..++..++-++++.|+++....+.+ .-+|+.++...- .+. +-..-++.|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~---~~WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIK---SVWGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHH---HhcCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 45667777777777777777777765 335555442110 000 111114556666666666666
Q ss_pred HHcCChHHHHHHHHHHHhcC--CCCchhHHHHHHHH
Q 008183 382 AIHGKADMASKMGKRLIDIN--PYDDSAYVIVANVL 415 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~ 415 (575)
...+++..|.++.+...+.- |-+..+|..|++-.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 66666666666666655533 22334555555443
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.43 E-value=0.065 Score=45.64 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=34.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHH
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLE-----MRGFAPDEYS 305 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t 305 (575)
...++..+...|++++|.++.+..+. +-|...|..+|.+|...|+..+|.+.|+.+. +.|+.|+..|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33455555566666666666665332 4455566666666666666666666665553 2356665544
No 218
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.40 E-value=0.14 Score=47.12 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=84.3
Q ss_pred HHHHHhhhCC--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------
Q 008183 255 ARRVFDENLS--VLNSIAWNAMMAGYAQQ-----GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG---------- 317 (575)
Q Consensus 255 A~~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 317 (575)
.++.|.. .+ ++|-.+|.+++..+... +..+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~a-a~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 53 VEKQFEA-AEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhhc-cCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3555665 44 67888888888887654 566767777889999999999999999999875542
Q ss_pred ------CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh-HHHHHHHHhC
Q 008183 318 ------LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL-EDAERIAMAM 365 (575)
Q Consensus 318 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 365 (575)
.-+-+..++++| +.+|+-||.++-..|+.++++.+.. .+..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 335688999999 8999999999999999999998864 3444444444
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.40 E-value=0.73 Score=41.70 Aligned_cols=49 Identities=6% Similarity=0.168 Sum_probs=25.7
Q ss_pred HhCCChHHHHHHHHhcCC--CC----cchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 146 SRFRSPDNAKKVFDEIRE--RD----VVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 146 ~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|++..+
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666666665543 21 12333455566666666666666666554
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.37 E-value=0.025 Score=42.05 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCC---chhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDI----NPYD---DSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
+++.+...|...|++++|+..+++.+++ ++.+ ..++..+..+|...|++++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444444421 1111 22444555555555555555555544
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.29 E-value=0.032 Score=41.47 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-------P-FEPD-AAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
..+|+.+...|...|++++|+..|++. + ..|+ ..++..+...+...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467889999999999999999988776 2 1233 6778999999999999999999998865
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.39 Score=45.03 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=44.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh---cccHHHHHHHHHHHHHhCCCCchhHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE---LAAMEQCRVIHGHAVVSGLDRNVIVGTG 241 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 241 (575)
|...|-.|-..|.+.|+...|..-|....+.. .+|...+..+..++.. ...-.++..+++++++.. +.|+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 55566666666666666666666666654421 1222333333333222 223344455555555432 333333344
Q ss_pred HHHHHHccCCHHHHHHHHhh
Q 008183 242 LIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~ 261 (575)
|...+...|++.+|...++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHHHHHcccHHHHHHHHHH
Confidence 44444444444444444444
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.96 E-value=1.1 Score=46.29 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=43.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
+...+..-+-+...+.-|.++|.+|+-. .+++......+++++|..+.++.-+..| ..|.....-++...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhh
Confidence 3333333344445555566666666421 2344445556666666666655544443 244555566666667
Q ss_pred chHHHHHHHHH
Q 008183 421 WDEVAEVRKVM 431 (575)
Q Consensus 421 ~~~a~~~~~~m 431 (575)
+++|.+.|-+.
T Consensus 820 FeEAqkAfhkA 830 (1081)
T KOG1538|consen 820 FEEAQKAFHKA 830 (1081)
T ss_pred HHHHHHHHHHh
Confidence 77776666543
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.96 E-value=5.7 Score=41.68 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=10.1
Q ss_pred HHHcCChHHHHHHHHHHH
Q 008183 278 YAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~ 295 (575)
+-+.|+.-.|-+++.+|.
T Consensus 933 ~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 933 DRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred hhhcccchhHHHHHHHHh
Confidence 444555555666665553
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.91 E-value=4.1 Score=39.74 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
.|.+.+...+..|+++.|+++.+.-.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 34445555555555555555554443
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.73 E-value=4.2 Score=40.11 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=47.9
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCC---Cc----chHHHHHHHHHh---CCCchHHHHHHHHhHHCCCCcCHHHHHHHHH
Q 008183 140 ALVHFYSRFRSPDNAKKVFDEIRER---DV----VCYGAMIVGFAQ---NSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 209 (575)
.|+-.|-...+++...++.+.+... +. ..--...-++-+ .|+.++|++++..+......++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334577778888888888888763 11 111123334455 7888888888888666666777778777766
Q ss_pred HHH
Q 008183 210 AAA 212 (575)
Q Consensus 210 ~~~ 212 (575)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 553
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.67 E-value=0.23 Score=45.78 Aligned_cols=101 Identities=13% Similarity=0.160 Sum_probs=79.7
Q ss_pred HHHHHHHHhcC--CCCcchHHHHHHHHHhC-----CCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhc----------
Q 008183 152 DNAKKVFDEIR--ERDVVCYGAMIVGFAQN-----SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL---------- 214 (575)
Q Consensus 152 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---------- 214 (575)
--.++.|.... ++|..+|-+++..|... +..+=....++.|.+-|+.-|..+|..+|+.+-+-
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34566777776 57888998888887654 45666667788899999999999999999876542
Q ss_pred ------ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH
Q 008183 215 ------AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252 (575)
Q Consensus 215 ------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 252 (575)
.+-+-+..++++|...|+-||-.+-..|++++++.+-.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 23455788999999999999999999999999887753
No 228
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.42 E-value=9 Score=41.55 Aligned_cols=173 Identities=8% Similarity=-0.001 Sum_probs=111.3
Q ss_pred ccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCC--CChhhHHHHHHHHhcCch-------HHHHHHH
Q 008183 16 TDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPS--PNIVSWTALISAHSNSPL-------SLNIFLS 86 (575)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~-------a~~~~~~ 86 (575)
.+|..+.+-....+..|..+...+-..|-..+..++|..++++... |+...-..+.-+|+|.+. |+++++.
T Consensus 60 ~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 60 DEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred hhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444433333336788899999999999999999999999864 554444555666666655 7887774
Q ss_pred HhhCCCCCcCCChhhHHHHHHHHhhchh---------hHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHHhCCChHHHHH
Q 008183 87 MLRHPTLSFLPNQRTLASLFKTCASLSH---------AFLFGLSLHSLSLKLS-LHDKPFCGSALVHFYSRFRSPDNAKK 156 (575)
Q Consensus 87 m~~~~~~~~~p~~~t~~~ll~~~~~~~~---------~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~ 156 (575)
.+-+.+.|-++++....... -+..|....+.+++.+ ...+..-.-.-.......|.+++|+.
T Consensus 140 --------~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~ 211 (932)
T KOG2053|consen 140 --------FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALE 211 (932)
T ss_pred --------CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHH
Confidence 44566778787777665431 2344556666666554 21122112222344557788999999
Q ss_pred HHHh-c----CCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCC
Q 008183 157 VFDE-I----RERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSD 196 (575)
Q Consensus 157 ~f~~-m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 196 (575)
++.. . ..-+...-|--+..+...+++.+..++-.++...|
T Consensus 212 ~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 212 FLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 9832 2 22344444556777788888888888888887765
No 229
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=2.8 Score=41.16 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=99.6
Q ss_pred HHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH---HHH-----
Q 008183 243 IDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAG--YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV---LTA----- 312 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a----- 312 (575)
..++.-.|+.++|.+.--..+....+..+...+.+ +--.++.+.|...|++-.+. .|+...-..+ ...
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 34566678888887776663332223333334443 44577888888888887764 4554433222 222
Q ss_pred -----HHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHH--H
Q 008183 313 -----LCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALL--S 379 (575)
Q Consensus 313 -----~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll--~ 379 (575)
..+.|.+..|.+.+.+.+ ++.|+ ...|........+.|++++|..--+.. .+.| ...+..+. .
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHH
Confidence 245689999999988663 55554 566777777788999999999877665 3333 23333333 3
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC
Q 008183 380 FSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 380 ~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
++...+++++|.+-++...+...+
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 455568899999999999887643
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.22 E-value=2 Score=42.48 Aligned_cols=143 Identities=20% Similarity=0.190 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC-----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS-----VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
..++..+++.-.+..-++.|..+|-+ .. .+++..++++|.-++ .|++.-|..+|+.=... ..-+..--.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k-~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIK-LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHH-HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHH
Confidence 45556666666666666667777765 32 345666666666554 35566666666643332 222222233444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAI 383 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 383 (575)
.-+...++-+.|..+|+.-..+ +..+ ...|..+|+--..-|++..|..+=++| .+-|...+...+.+-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~i 547 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhh
Confidence 5556667777788887744332 2222 467778887777788887777666666 234444444445555543
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.17 E-value=1.1 Score=45.63 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=85.8
Q ss_pred ccCCHHHHHHHHh--hhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 248 KAGIVSDARRVFD--ENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 248 ~~g~~~~A~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
-.|+++++.+..+ +.++.-+..-.+.++.-+-+.|.++.|+++-.+ ..+ -.....+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHHH
Confidence 3456666544444 212222344466677777777888888776433 211 12333567888888876
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 326 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
..+. ++...|..|.+...+.|+++-|++.|++.+ -|..|+-.|...|+.+.-.++.+.....+.
T Consensus 341 a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 341 AKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp CCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 4422 466788888888888888888888888875 245566667777877776777666655443
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHH
Q 008183 406 SAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
++....++.-.|+.++..+++.
T Consensus 405 --~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 --INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHH
Confidence 2333344444566666555554
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.15 E-value=0.38 Score=44.48 Aligned_cols=91 Identities=21% Similarity=0.309 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---chhHHH
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-------PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD---DSAYVI 410 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 410 (575)
.|+.-++.| +.|++.+|...|... ...||..-| |..++...|++++|..+|..+.+..|.+ +.++.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 355444433 345566666666554 134455555 6677777777777777777777655443 345666
Q ss_pred HHHHHHhCCCchHHHHHHHHHhhC
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
|.....+.|+.++|..+|+++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666777777777777777777654
No 233
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.10 E-value=0.24 Score=48.06 Aligned_cols=127 Identities=9% Similarity=-0.058 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHccCCHHHHHHHHhhhCC------CC--Chh
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVV----SGLD-RNVIVGTGLIDGYGKAGIVSDARRVFDENLS------VL--NSI 269 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~--~~~ 269 (575)
.|..+-+.|.-.|+++.|...|+.-+. .|-. .....+..|.+++.-.|+++.|.+.|+..+. .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344445555556788888877765432 2311 2245677788888888999998888875221 23 234
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMR----G-FAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
+..+|...|.-..++++|+..+.+-... + ..-....+-+|..++...|..++|..+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5667788888888888888887654321 1 2224467778888888888888888776644
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.43 Score=46.51 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..++..|...+.+.+++..|++...+.++.+|+|..+...=..+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567778888889999999999999999999999999888999999999999999999998864
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.06 E-value=0.51 Score=38.18 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=68.2
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCc---hhHHHHHHHHHhCCCc
Q 008183 348 AMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYDD---SAYVIVANVLSGVGRW 421 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 421 (575)
++...|+++.|++.|.+. .+-| ....||.=..++.-.|+.++|+.-+++.+++. +... .+|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788888888888776 3444 57788888889998999999998888888865 3322 2466667788889999
Q ss_pred hHHHHHHHHHhhCCC
Q 008183 422 DEVAEVRKVMKDRRV 436 (575)
Q Consensus 422 ~~a~~~~~~m~~~~~ 436 (575)
+.|..-|+...+-|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999988888776653
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.06 E-value=0.33 Score=48.46 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL----EHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 300 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
+.+...++.+..+|...|++++|...|++.. .+.|+. ..|..+..+|...|++++|...+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456788888889999999999999998764 446773 35888888999999999999988876
No 237
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.96 E-value=4.6 Score=36.47 Aligned_cols=59 Identities=7% Similarity=-0.065 Sum_probs=35.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCC--cCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVG--STMYCVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
....+.+.|++.+|.+.|+.+...-.. --....-.+..++.+.++++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444566778888888888888664211 11233445566667777777777777776654
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.49 E-value=4 Score=34.21 Aligned_cols=87 Identities=9% Similarity=0.172 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCC
Q 008183 101 TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNS 180 (575)
Q Consensus 101 t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 180 (575)
....++..+...+ .......+++.+++.+ ..++...|.++..|++.+ ..+....+.. ..+......+++.|.+.+
T Consensus 9 ~~~~vv~~~~~~~-~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 9 DVSEVVELFEKRN-LLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CHHHHHHHHHhCC-cHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 3445666666666 6777777777777776 366677788888887663 3333444442 223333444555566666
Q ss_pred CchHHHHHHHHh
Q 008183 181 RLVDSLSVFADM 192 (575)
Q Consensus 181 ~~~~A~~~~~~m 192 (575)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666665554
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.48 E-value=5.6 Score=35.83 Aligned_cols=195 Identities=21% Similarity=0.151 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENL----SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
..........+...+.+..+...+.... .......+......+...+...++.+.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 4555666666666677776666666532 1233344555555666666677777777766654333311 1111222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH
Q 008183 312 -ALCNAGLAGESEKWIERMKVRYKLEP----GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD--AAVWRALLSFSAI 383 (575)
Q Consensus 312 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~ 383 (575)
.+...|+++.+...+.... . ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKAL-E--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHH-h--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 5667777777777777662 2 222 2333334444456677777777777666 22333 5667777777777
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.++.+.|...+.......|.....+..+...+...|.++++...+.+....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777888888888888777764445555555555666677777777666543
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=93.43 E-value=2.3 Score=36.34 Aligned_cols=90 Identities=11% Similarity=-0.066 Sum_probs=57.1
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 252 (575)
...+.+.|++++|..+|+-+...+. -|..-+..+..++-..+++++|...|......+ .-|+...-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 3345567788888888777765321 122233444444555677788877777766554 34555555567778888888
Q ss_pred HHHHHHHhhhCC
Q 008183 253 SDARRVFDENLS 264 (575)
Q Consensus 253 ~~A~~~~~~~~~ 264 (575)
+.|...|...+.
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888877444
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.38 E-value=1.8 Score=36.01 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=38.5
Q ss_pred hccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-hHHHHHHH
Q 008183 350 GRAGRLEDAERIAMAM----PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANV 414 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~ 414 (575)
.+.|++++|.+.|+.+ |..| ....---|+.+|.+.+++++|...+++.+++.|.++. -|.....+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 4456666666666665 2222 2334445667777777777777777777777776654 24433333
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.22 E-value=16 Score=41.12 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
.+.+|...|++.+|..+..++. ..-+ ..+-..|+.-+...+++-+|-++..+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLS----EGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 3445555555555555555441 1111 112244555555556665555555554
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.20 E-value=4.5 Score=33.91 Aligned_cols=126 Identities=6% Similarity=-0.037 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 350 (575)
...++..+.+.+.+.....+++.+...+. .+....+.++..|++.. .+.....+.. .++.......+..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 34455566666666666666666665542 45556666666666543 2233333321 122223334555666
Q ss_pred ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 351 RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH-GKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
+.+.++++.-++.+++... ..+..+... ++++.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6666666666666665211 122222233 566666666554 223445555555444
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.17 E-value=5.4 Score=41.32 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=86.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhC-CCCc-----hhHHHHHHHHHHc----cCCHHHHHHHHhhhCC-CCChhhHHH
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSG-LDRN-----VIVGTGLIDGYGK----AGIVSDARRVFDENLS-VLNSIAWNA 273 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~~ 273 (575)
..+++...=.|+-+.+.+.+....+.+ +... .-.|+..+..++. ..+++.|.++++.+.. -|+...|.-
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 344444444566666666665554422 1111 1234444433332 3456777777777333 355555543
Q ss_pred HH-HHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 008183 274 MM-AGYAQQGDQSTVLELFHLLEMRG---FAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349 (575)
Q Consensus 274 li-~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 349 (575)
.- ..+...|++++|++.|++..... .+.....+--+.-.+.-..++++|...|..+.......+...+|.. .-.+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~-a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA-AACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH-HHHH
Confidence 32 23556777777777777654211 1223344555566667778888888888877554444333333322 1234
Q ss_pred hccCCh-------HHHHHHHHhCC
Q 008183 350 GRAGRL-------EDAERIAMAMP 366 (575)
Q Consensus 350 ~~~g~~-------~~A~~~~~~m~ 366 (575)
...|+. ++|.++|.+.+
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 455666 77888887773
No 245
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.15 E-value=6.8 Score=37.70 Aligned_cols=144 Identities=10% Similarity=0.052 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHhh-chhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHh--CC----ChHHHHHHHHhcCC-------C
Q 008183 99 QRTLASLFKTCAS-LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR--FR----SPDNAKKVFDEIRE-------R 164 (575)
Q Consensus 99 ~~t~~~ll~~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~f~~m~~-------~ 164 (575)
..++..+|..-.. ....+.....+++.+.+.|+..+.++|-+-.-.... .. .+..|..+|+.|++ +
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 3444444444444 223577777888888888888877766553333322 22 34568888888876 3
Q ss_pred CcchHHHHHHHHHhCCCc----hHHHHHHHHhHHCCCCcCHH-HHHHHHHHHHh-ccc--HHHHHHHHHHHHHhCCCCch
Q 008183 165 DVVCYGAMIVGFAQNSRL----VDSLSVFADMRSSDVGSTMY-CVSGALRAAAE-LAA--MEQCRVIHGHAVVSGLDRNV 236 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~-~~~--~~~a~~~~~~~~~~g~~~~~ 236 (575)
+-.++.+|+.. ..++. +.+...|+.+.+.|+..+.. -+.+-+-++.. ... ...+..+++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 55667777655 33333 45677888888878776543 33333333332 222 45677888888899988887
Q ss_pred hHHHHHHH
Q 008183 237 IVGTGLID 244 (575)
Q Consensus 237 ~~~~~li~ 244 (575)
..|..+.-
T Consensus 218 ~~yp~lGl 225 (297)
T PF13170_consen 218 MHYPTLGL 225 (297)
T ss_pred ccccHHHH
Confidence 77765543
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.12 E-value=3.9 Score=42.33 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=68.5
Q ss_pred HHHHHHhcCch--HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchh------HHHH
Q 008183 69 ALISAHSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPF------CGSA 140 (575)
Q Consensus 69 ~li~~~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~ 140 (575)
.-+......|- ...+|.-+... +||. +..++...+=.| |-+.|.+.+....+.+--..+. .|..
T Consensus 163 ~~~d~~~~sgv~~G~G~f~L~lSl----LPp~---~~kll~~vGF~g-dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~ 234 (468)
T PF10300_consen 163 KPIDEFFESGVYFGFGLFNLVLSL----LPPK---VLKLLSFVGFSG-DRELGLRLLWEASKSENIRSPLAALVLLWYHL 234 (468)
T ss_pred chhHHHHHHhHHHHHHHHHHHHHh----CCHH---HHHHHhhcCcCC-cHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 35666666666 77888888774 4443 455666667777 8888888888776643222222 2222
Q ss_pred HHHHHHh----CCChHHHHHHHHhcCC--CCcchHHHHH-HHHHhCCCchHHHHHHHHhH
Q 008183 141 LVHFYSR----FRSPDNAKKVFDEIRE--RDVVCYGAMI-VGFAQNSRLVDSLSVFADMR 193 (575)
Q Consensus 141 li~~~~~----~g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 193 (575)
.+..+.. ..+.+.|.++++.+.+ |+...|...- +.+...|++++|++.|++..
T Consensus 235 ~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 235 VVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 2222222 3455667777776665 5655554332 33455677777777777653
No 247
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=14 Score=39.47 Aligned_cols=142 Identities=7% Similarity=0.074 Sum_probs=83.0
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhc
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASL 112 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~ 112 (575)
..++...|..+.-.|++++|-.+.-.|-..+..-|.--+.-++..++-..++.-+.... ...+...|-.+|-.|..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~---~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGP---PRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCC---cccCchHHHHHHHHHHH-
Confidence 34677778888888888888888888888888888888887777777555555555543 34456667777777765
Q ss_pred hhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 008183 113 SHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADM 192 (575)
Q Consensus 113 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 192 (575)
. +.. .+++.+.+ .+++.+.....++. ...-|++-.+++ ..--.|+.-|...+++..|+.++-..
T Consensus 468 ~-~~~---~F~e~i~~--Wp~~Lys~l~iisa---------~~~q~~q~Se~~-~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 468 S-DVK---GFLELIKE--WPGHLYSVLTIISA---------TEPQIKQNSEST-ALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred H-HHH---HHHHHHHh--CChhhhhhhHHHhh---------cchHHHhhccch-hHHHHHHHHHHHccChHHHHHHHHhc
Confidence 2 222 22222221 12222222222211 111111111111 12223777888888888888887766
Q ss_pred HH
Q 008183 193 RS 194 (575)
Q Consensus 193 ~~ 194 (575)
+.
T Consensus 532 k~ 533 (846)
T KOG2066|consen 532 QD 533 (846)
T ss_pred cC
Confidence 43
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.95 E-value=8.8 Score=36.66 Aligned_cols=17 Identities=12% Similarity=-0.203 Sum_probs=10.1
Q ss_pred HHHcCChHHHHHHHHHH
Q 008183 381 SAIHGKADMASKMGKRL 397 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~ 397 (575)
+.+.+++++|.+.++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 34556667776666543
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.91 E-value=0.53 Score=44.24 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
..++..++..+...|+.+.+...++++...+|.+...|..++.+|.+.|+...|...++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445666778888889999999999999999999999999999999999999999999988865
No 250
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.91 E-value=11 Score=37.67 Aligned_cols=46 Identities=13% Similarity=0.001 Sum_probs=34.5
Q ss_pred CcccHHHHHHHHhHcCCChHHHHHHHccCC--------CCChhhHHHHHHHHhc
Q 008183 31 ADRSIYNNLITNYSKSNLLSYSLRLFNHIP--------SPNIVSWTALISAHSN 76 (575)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~ 76 (575)
+|-+.-+..++.+.+.|++.+++.++++|. .-|+.+||.++-.+++
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 445566777888889999999999999885 2478888885554443
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.82 E-value=0.22 Score=29.79 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
.+|..+...+...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888875
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.73 E-value=5.1 Score=40.95 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
+...|..|.+...+.|+++-|++.|.+ .. -|..|+-.|.-.|+.++-.++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k-~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK-AK-----DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH-CT------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh-hc-----CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555555 21 244444444455554444444443333
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.69 E-value=8.2 Score=35.62 Aligned_cols=174 Identities=13% Similarity=0.075 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCC------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHH
Q 008183 136 FCGSALVHFYSRFRSPDNAKKVFDEIRER------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALR 209 (575)
Q Consensus 136 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 209 (575)
..|+.-+.- .+.|++++|.+.|+.+..+ ..-+--.++-++-+.+++++|+..+++....-..-...-|..-|.
T Consensus 36 ~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 344443333 3678899999999888653 122344566778888999999988888876433222334444444
Q ss_pred HHHhc-------ccHHHHHHHHH---HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhh-H-HHHHHH
Q 008183 210 AAAEL-------AAMEQCRVIHG---HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA-W-NAMMAG 277 (575)
Q Consensus 210 ~~~~~-------~~~~~a~~~~~---~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~li~~ 277 (575)
+.+.. .+...+.+.+. .+++. +|-+..+ .+|..-... + .|... + -.+..-
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya--------------~dA~~~i~~-~--~d~LA~~Em~Iary 176 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYA--------------PDAKARIVK-L--NDALAGHEMAIARY 176 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcch--------------hhHHHHHHH-H--HHHHHHHHHHHHHH
Confidence 44422 22222332222 22222 1111111 111111110 0 00011 1 123445
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPD---EYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
|.+.|.+..|..-+++|.+. .+-. ...+-.+..+|...|..++|...-.-+
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 77888888888888888776 2211 234556667777777777777765544
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.60 E-value=3.1 Score=40.07 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=21.9
Q ss_pred HhCCCchHHHHHHHHhHHC--CCCcCHHHHHHHHHHHHhcccHHHHH
Q 008183 177 AQNSRLVDSLSVFADMRSS--DVGSTMYCVSGALRAAAELAAMEQCR 221 (575)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~ 221 (575)
.+..+.++|+..+.+-... ...---.++..+..+.+..|.++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 3455666666666555432 01111234555555555555555443
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=1.9 Score=42.29 Aligned_cols=138 Identities=10% Similarity=0.020 Sum_probs=96.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 008183 275 MAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354 (575)
Q Consensus 275 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 354 (575)
.+.|.+.|++..|...|++.... |. +...-+.++...... .-..+++.|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677788888888887776542 11 111111122222211 123456777888999999
Q ss_pred hHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH-HHHHHHH
Q 008183 355 LEDAERIAMAM-PFE-PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV-AEVRKVM 431 (575)
Q Consensus 355 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 431 (575)
+.+|.+.-++. ... +|+-..--=..++...|+++.|...|++++++.|.|-.+-..|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877665 333 45666666678889999999999999999999999988888888888777776654 7788888
Q ss_pred hhC
Q 008183 432 KDR 434 (575)
Q Consensus 432 ~~~ 434 (575)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 643
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=92.53 E-value=2.1 Score=43.01 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
|+.....+..+....++.+.|...|+++..++|+.+.+|........-+|+.++|.+.+++-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555566667777777777777766666666666666667777766666653
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.34 E-value=14 Score=37.53 Aligned_cols=56 Identities=9% Similarity=0.028 Sum_probs=33.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
+..+.-+.|+.++|++.|++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445555667777777777666654211 12334555666666666666666666655
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=4.9 Score=38.34 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 249 AGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 249 ~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
.|+..+|-..+++.+. +.|..+|+--=.+|..+|+.+.-...++++.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 3444444444444232 3445555555555555555555555555444
No 259
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.02 E-value=0.45 Score=28.29 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
..|..+...+...|++++|.+.+++.++++|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777788888888888888888877754
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.53 E-value=1.5 Score=41.36 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM-----RGFAPDEYSFLA 308 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 308 (575)
..++..++..+..+|+++.+.+.+++.+. +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34567788899999999999988887433 56788999999999999999999999988865 477777776655
Q ss_pred HHHH
Q 008183 309 VLTA 312 (575)
Q Consensus 309 ll~a 312 (575)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 261
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.38 E-value=24 Score=38.19 Aligned_cols=77 Identities=8% Similarity=-0.054 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 215 (575)
.-...+..+++.+++.+..+ |..-+..+...-.....+....|+.++|......+-..|. ........++..+.+.|
T Consensus 101 Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 33444555566677777766 3322223444455666677777777777666666654442 22334455555554333
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=14 Score=34.94 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=77.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH
Q 008183 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356 (575)
Q Consensus 277 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 356 (575)
.....|+..+|..+|......... +...-..+..++...|+.+.|..++..+..+.. .........=|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 355667777777777766654322 234444566667777777777777765522110 000111122234444444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhCCCch
Q 008183 357 DAERIAMAMPFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDIN--PYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 357 ~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~ 422 (575)
+...+-++..-.| |...--.|...+...|+.+.|.+.+-.+++.+ -.+...-..|+..+.-.|.-+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 4444444443345 45555566666777777777766555555433 344555566666666665433
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.09 E-value=11 Score=33.78 Aligned_cols=197 Identities=17% Similarity=0.088 Sum_probs=109.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHH-HHH
Q 008183 204 VSGALRAAAELAAMEQCRVIHGHAVVS-GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMA-GYA 279 (575)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~-~~~ 279 (575)
+......+...+.+..+...+...... ........+..+...+...+++..+.+.+..... ..+......... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333333444444444444444433321 1233344444455555555556666666655222 111122222222 566
Q ss_pred HcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhccCCh
Q 008183 280 QQGDQSTVLELFHLLEMRGF--APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LEHYTCLISAMGRAGRL 355 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~ 355 (575)
..|++++|...|.+...... ......+......+...++.+.+...+...... .++ ...+..+...+...+.+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccH
Confidence 77777777777777644211 112333334444456677888888887766322 233 56677777777788888
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 356 EDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 356 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888887776 33444 445555555555666788888888888887775
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.07 E-value=20 Score=36.58 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC-C-CCC--HHHHHHHH
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP-F-EPD--AAVWRALL 378 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll 378 (575)
..+=..+..++-+.|+.++|.+.+.+|.+.+...-.......|+..+...+.+.++..++.+-. + -|. ..+|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3333446666678899999999999996554322335577788999999999999999988773 1 233 55677666
Q ss_pred HHHHHcCCh---------------HHHHHHHHHHHhcCCCCc
Q 008183 379 SFSAIHGKA---------------DMASKMGKRLIDINPYDD 405 (575)
Q Consensus 379 ~~~~~~g~~---------------~~a~~~~~~~~~~~p~~~ 405 (575)
-.++..++- ..|.+...++.+.+|..+
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 444444331 235577888888887554
No 265
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.05 E-value=6 Score=34.80 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH--HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---Cc----hhHH
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM--YCVSGALRAAAELAAMEQCRVIHGHAVVSGLD---RN----VIVG 239 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~----~~~~ 239 (575)
+..+..-|.+.|+.++|++.|.++++....|.. ..+..+++.+.-.+++..+.....++...--. .+ ..+|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334444444444444444444444443333322 12334444444444444444444333222111 11 1222
Q ss_pred HHHHHHHHccCCHHHHHHHHhh
Q 008183 240 TGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~ 261 (575)
..|.. ...|++..|-+.|-+
T Consensus 119 ~gL~~--l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 119 EGLAN--LAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHH--HHhchHHHHHHHHHc
Confidence 22222 235677777777766
No 266
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.73 E-value=10 Score=32.76 Aligned_cols=137 Identities=10% Similarity=0.182 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccC--ChHHHHHHHHhC
Q 008183 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAG--RLEDAERIAMAM 365 (575)
Q Consensus 288 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 365 (575)
.+..+.+.+.|++|+...+..++..+.+.|....-.+++. +++-+|.......+-.+.... -.+-|.+.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 4556677778899999999999999999998776665543 456666555444443333221 134455556665
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 366 PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 366 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
+ ..+..++..+...|++-+|.++.+.....+..++ ..++.+-.+.++...-..+++-..+++.+
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPA---RKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCH---HHHHHHHHHcCCHHHHHHHHHHHHHhhHh
Confidence 4 2345566777888999999988877644432222 34666666777766666677666665543
No 267
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.62 E-value=20 Score=35.91 Aligned_cols=406 Identities=11% Similarity=0.072 Sum_probs=215.8
Q ss_pred HHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCCCCh---hhHHHHHHHHhcCch---HHHHHHHHhhCCCC
Q 008183 20 IVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNI---VSWTALISAHSNSPL---SLNIFLSMLRHPTL 93 (575)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~---a~~~~~~m~~~~~~ 93 (575)
++.+++.. .+.|..+|-.||+-|...|..++.++++++|..|-+ ..|..-|++-....+ ...+|.+.....
T Consensus 30 rLRerIkd-NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-- 106 (660)
T COG5107 30 RLRERIKD-NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-- 106 (660)
T ss_pred HHHHHhhc-CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--
Confidence 45454433 236889999999999999999999999999987654 468877776443334 566777766643
Q ss_pred CcCCChhhHHHHHHHHhhch-----hhHHHHHHHHHHHHh-hCCCC-chhHHHHHHHHHH---------hCCChHHHHHH
Q 008183 94 SFLPNQRTLASLFKTCASLS-----HAFLFGLSLHSLSLK-LSLHD-KPFCGSALVHFYS---------RFRSPDNAKKV 157 (575)
Q Consensus 94 ~~~p~~~t~~~ll~~~~~~~-----~~~~~a~~~~~~~~~-~g~~~-~~~~~~~li~~~~---------~~g~~~~A~~~ 157 (575)
. +...|..-|.-.-+.. +.-...-+.++..+. .+++| +...|+..++..- .+.++|..++.
T Consensus 107 -l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 107 -L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred -c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 3 3444444443332222 011122233444333 24444 3344555554432 22344555666
Q ss_pred HHhcCC-C---------CcchHHHHHHHH-Hh--CC----CchHHHHHHHHhHH--CCCCc----CHHHHHHHHH-----
Q 008183 158 FDEIRE-R---------DVVCYGAMIVGF-AQ--NS----RLVDSLSVFADMRS--SDVGS----TMYCVSGALR----- 209 (575)
Q Consensus 158 f~~m~~-~---------~~~~~~~li~~~-~~--~g----~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~----- 209 (575)
+..+.. | |-..|..=+... ++ .| -+-.|...+++... .|++. +..|++.+-+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 666554 1 222222111111 00 11 13355566666532 34322 2223332211
Q ss_pred ------HHHhc-----ccH--HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChh------
Q 008183 210 ------AAAEL-----AAM--EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSI------ 269 (575)
Q Consensus 210 ------~~~~~-----~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~------ 269 (575)
-=... ++. +...-+|.+.+.. +.-...+|----.-+...++-+.|+......++ .|...
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ 342 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEY 342 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHH
Confidence 10000 111 1111233333332 223344444444445556777777777766444 22210
Q ss_pred ------------hHHHHHHHHHH---cCChHHHHHH------HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008183 270 ------------AWNAMMAGYAQ---QGDQSTVLEL------FHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328 (575)
Q Consensus 270 ------------~~~~li~~~~~---~g~~~~A~~l------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 328 (575)
+|..++..+.+ .++.+.+... ..+..-....-=...|...+.+-.+..-++.|+.+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 12222222111 1111111111 11110000111234567778887888888999999998
Q ss_pred HHHhcC-CCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCC--
Q 008183 329 MKVRYK-LEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAV-WRALLSFSAIHGKADMASKMGKRLIDINPY-- 403 (575)
Q Consensus 329 m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-- 403 (575)
. .+.+ +.+++..+++++.-++ .|+...|.++|+-- .--||... -+-.+.-+...++-+.|..+|+..++.-..
T Consensus 423 ~-rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 423 L-RKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred H-hccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 8 5556 6778899999998766 67888899998754 33455333 355566667788888899999866652221
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 404 DDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
-...|..++.--..-|+...|..+-++|.+.
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 2347888888888888888888777766543
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.25 E-value=2.6 Score=34.21 Aligned_cols=85 Identities=18% Similarity=0.121 Sum_probs=53.9
Q ss_pred HHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHhcCCH
Q 008183 245 GYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPD--EYSFLAVLTALCNAGLA 319 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~--~~t~~~ll~a~~~~g~~ 319 (575)
+.+..|+++.|++.|.+.+. +.....||.-..++--.|+.++|++-+++..+. |-+.- ...|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45667788888888876444 556777888888888888888888777766543 32211 12233333345556777
Q ss_pred HHHHHHHHHH
Q 008183 320 GESEKWIERM 329 (575)
Q Consensus 320 ~~a~~~~~~m 329 (575)
+.|..=|+..
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 7777666655
No 269
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.11 E-value=10 Score=31.71 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=41.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGF--APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 350 (575)
-.....+.|++++|.+.|+.+...=. +-....-..++.++.+.+++++|...+++.++-+--.|+ ..|...+.+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 33445566777777777777665511 112344555666667777777777777666433322232 33444444444
No 270
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.00 E-value=4.2 Score=37.77 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=37.1
Q ss_pred HcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChH
Q 008183 280 QQGDQSTVLELFHLLEMRGFA--PDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLE 356 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~ 356 (575)
+.|++.+|...|....+.... -....+-.|..++...|+++.|..+|..+..+++-.|.. ..+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555544211 011223335555555555555555555554443333321 33333333344444444
Q ss_pred HHHHHHHh
Q 008183 357 DAERIAMA 364 (575)
Q Consensus 357 ~A~~~~~~ 364 (575)
+|...|++
T Consensus 233 ~A~atl~q 240 (262)
T COG1729 233 EACATLQQ 240 (262)
T ss_pred HHHHHHHH
Confidence 44444433
No 271
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.63 E-value=31 Score=37.28 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=31.2
Q ss_pred cccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch
Q 008183 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL 79 (575)
Q Consensus 32 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~ 79 (575)
+..+|. +|--+.+||.+++|.++..+.. .+....+-..+..|+.+.+
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~ 160 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPD 160 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTS
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCC
Confidence 344554 6777889999999999994333 3445566777888877533
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.58 E-value=23 Score=35.01 Aligned_cols=148 Identities=16% Similarity=0.034 Sum_probs=72.6
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hh
Q 008183 266 LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP---DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LE 340 (575)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 340 (575)
....+|..+...+.+.|+++.|...+..+...+..+ +......-....-..|+.++|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777888888888888888888777643211 2222223334445567778888777766431 11111 11
Q ss_pred HHHHHHHHHhccCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 341 HYTCLISAMGRAGRLEDAERI-AMAMPFEPDAAVWRALLSFSAIH------GKADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
....+...+.. ..+..... ........-...+..+..-+... ++.+++...+..+.+..|....+|..+..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000000012222222222233 67788888888888888877777666655
Q ss_pred HHH
Q 008183 414 VLS 416 (575)
Q Consensus 414 ~~~ 416 (575)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 553
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.10 E-value=16 Score=35.20 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-cCC--HHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 285 STVLELFHLLEMRGFAPD-EYSFLAVLTALCN-AGL--AGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 285 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+.++.+|+.+.+.|+..+ ..-+.+-+-++.. ... ..++.++++.+ .+.++++...+|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l-~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL-KKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH-HHcCCccccccccHHHH
Confidence 455667777777776543 3233333333332 222 44677778877 56688887777765543
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.63 E-value=20 Score=33.15 Aligned_cols=159 Identities=19% Similarity=0.227 Sum_probs=92.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 008183 275 MAGYAQQGDQSTVLELFHLLEMRGF--APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352 (575)
Q Consensus 275 i~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 352 (575)
+..-.+.|++++|.+.|+.+....+ +-...+...++-++.+.+++++|....++....++-.||+. |...+.+++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 3344566777777777777765421 12244555566666667777777777777666655555531 22222222211
Q ss_pred -------CChHHHHHHHHhC-------C---CCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 353 -------GRLEDAERIAMAM-------P---FEPDAAVWR------------ALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 353 -------g~~~~A~~~~~~m-------~---~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
.+...+.+.|..+ | ..||+..-- .+..-|.+.|.+..|..-++++++.-|.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 2222233333222 2 223432211 2235577889999999999999886554
Q ss_pred Cch---hHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 404 DDS---AYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 404 ~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
... ++..+..+|...|-.++|.+.-+-+...
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 433 5667788999999999999887766543
No 275
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.26 E-value=4 Score=31.58 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 286 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556666667789999999999999999999999999999887665533 337776664
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.00 E-value=26 Score=34.13 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=71.2
Q ss_pred hCCChHHHHHHHHhcCCC------CcchHHHHHHHHHhCCCchHHHHHHHHhHHC--CCCcCH---HHHHHHHHHHHhcc
Q 008183 147 RFRSPDNAKKVFDEIRER------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSS--DVGSTM---YCVSGALRAAAELA 215 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~~~~~~~ 215 (575)
...+.+.|+..+.+-.++ -..+|..+..+..+.|.+++++..--.-... ...-.. ..|..+.++..+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777787777665442 2346777788888888888776542221110 001111 12333333333333
Q ss_pred cHHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHccCCHHHHHHHHhhhCC------CC--ChhhHHHHHHHHHHcCC
Q 008183 216 AMEQCRVIHGHAVVS-GLDR---NVIVGTGLIDGYGKAGIVSDARRVFDENLS------VL--NSIAWNAMMAGYAQQGD 283 (575)
Q Consensus 216 ~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~--~~~~~~~li~~~~~~g~ 283 (575)
++.++.++-..-... |..| .-.+.-++..+....+.++++++.|+.++. ++ ....+-.|.+.|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 333333333322221 1111 112333445555555666666666665443 11 12345555566666666
Q ss_pred hHHHHHHHHH
Q 008183 284 QSTVLELFHL 293 (575)
Q Consensus 284 ~~~A~~l~~~ 293 (575)
+++|.-+..+
T Consensus 178 ~~Kal~f~~k 187 (518)
T KOG1941|consen 178 YEKALFFPCK 187 (518)
T ss_pred hhHHhhhhHh
Confidence 6666554443
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.98 E-value=1.3 Score=27.03 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLL 294 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m 294 (575)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666666666666666666663
No 278
>PRK09687 putative lyase; Provisional
Probab=87.95 E-value=25 Score=33.53 Aligned_cols=181 Identities=9% Similarity=0.010 Sum_probs=77.7
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCc----hHHHHHHHHhHHCCCCcCHHHHHHH
Q 008183 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRL----VDSLSVFADMRSSDVGSTMYCVSGA 207 (575)
Q Consensus 132 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 207 (575)
.+|..+....+..+.+.|..+-...+..-+..+|...-...+.++.+.|+. .+++.++..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 445555555555555555433333333333344555555555566666653 3455555555322 3444444444
Q ss_pred HHHHHhcccHHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcC-Ch
Q 008183 208 LRAAAELAAMEQ--CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG-DQ 284 (575)
Q Consensus 208 l~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 284 (575)
+.++...+.... .......+...-..++..+....+.++++.|+- +|...+-.++..+|...-..-+.++.+.+ ..
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 444444321110 011122222212233445555555555555542 34444333344444433333333333332 12
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008183 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318 (575)
Q Consensus 285 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 318 (575)
..+...+..+.. .+|...-...+.++.+.++
T Consensus 191 ~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 191 PDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 234444333332 2344444444555555554
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.93 E-value=21 Score=38.60 Aligned_cols=179 Identities=12% Similarity=0.087 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHH
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNV--IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ 280 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 280 (575)
+....|....+...++.|..+- ...+.+++. .+.....+-+.+.|++++|...|-+.+...+. .-+|.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcC
Confidence 4455666666666666665543 334444432 23344455667889999999998775552222 346777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHH
Q 008183 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER 360 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 360 (575)
..+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+.. .+ |.- ..-....+..+.+.+-+++|..
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~-~~-g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC-DK-GEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC-CC-cce--eeeHHHHHHHHHHhChHHHHHH
Confidence 78888888889999999876 4444456899999999999888876644 21 111 1123456777788888899988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 361 IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 361 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
+-.+.+. +......++ -..+++++|.+.++.+
T Consensus 485 LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 8877753 333334443 4568899998887654
No 280
>PRK11906 transcriptional regulator; Provisional
Probab=87.89 E-value=31 Score=35.01 Aligned_cols=142 Identities=9% Similarity=0.070 Sum_probs=67.3
Q ss_pred CChHHHHHHHccCCCCCh---hhH--HHHHHHHhcC----ch----HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhch
Q 008183 47 NLLSYSLRLFNHIPSPNI---VSW--TALISAHSNS----PL----SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113 (575)
Q Consensus 47 g~~~~A~~~f~~m~~~~~---~~~--~~li~~~~~~----g~----a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~ 113 (575)
..+..++. -...++.+. ..| ...++|.... .. |+.+|.+...... ..|+-..-...+.-|--.+
T Consensus 232 ~~~~~~E~-~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~--ldp~~a~a~~~lA~~h~~~ 308 (458)
T PRK11906 232 QTVHKPER-SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSD--IQTLKTECYCLLAECHMSL 308 (458)
T ss_pred hhhhhhhh-hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhccc--CCcccHHHHHHHHHHHHHH
Confidence 44444444 233334455 667 7777776552 22 8888988873211 5565432222222221111
Q ss_pred ---------hhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--CC-cchHHHHHHHHHhCCC
Q 008183 114 ---------HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--RD-VVCYGAMIVGFAQNSR 181 (575)
Q Consensus 114 ---------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~ 181 (575)
.+...|.++-+..++.+ +.|+.....+-....-.|+++.|..+|++... || ..+|........-+|+
T Consensus 309 ~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 309 ALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred HHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 13444445555555444 34444444444444455555555555555433 22 2233333333344555
Q ss_pred chHHHHHHHHh
Q 008183 182 LVDSLSVFADM 192 (575)
Q Consensus 182 ~~~A~~~~~~m 192 (575)
.++|.+.+++.
T Consensus 388 ~~~a~~~i~~a 398 (458)
T PRK11906 388 IEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHH
Confidence 55555555553
No 281
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.84 E-value=24 Score=33.20 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+.+.....|...|.+.+|.++.++.+.++|-+...+-.|++.|...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445567889999999999999999999999999999999999999998888888877753
No 282
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=22 Score=32.63 Aligned_cols=202 Identities=13% Similarity=0.054 Sum_probs=109.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 248 (575)
|.--..+|-...++++|-.-+.+..+ +..-|...|. .....+.|--+.+++.+. +.-+..++--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 33344556666667776665555432 1111111111 112233444444444432 2234556777788899
Q ss_pred cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHhcCCHHHHH
Q 008183 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR---GF--APDEYSFLAVLTALCNAGLAGESE 323 (575)
Q Consensus 249 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~g~~~~a~ 323 (575)
+|..+.|-..++++- -...+-++++|+++|++-..- +- +--..-+..+-..+.+...+++|-
T Consensus 104 ~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred hCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 998888777776611 123456677888877765432 11 111122333334445556666665
Q ss_pred HHHHHHHH---hcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHHcCChHHHHHH
Q 008183 324 KWIERMKV---RYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM---P--FEP-DAAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 324 ~~~~~m~~---~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
..+.+-.. +..--|+ -..|-+.|-.|.-..++..|.+.++.- | ..| +..+...||.+| ..||.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 54432210 0011122 244566666777788999999999884 3 223 578888899887 45777777665
Q ss_pred H
Q 008183 394 G 394 (575)
Q Consensus 394 ~ 394 (575)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.66 E-value=0.99 Score=27.50 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 374 WRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 374 ~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
|..|...|.+.|++++|..++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 284
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.42 E-value=5.2 Score=30.62 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+..++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+- +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666677777789999999999999999999999999999988655443 4446666653
No 285
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.38 E-value=6 Score=37.45 Aligned_cols=101 Identities=8% Similarity=0.018 Sum_probs=75.9
Q ss_pred hCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-C------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH
Q 008183 129 LSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-R------DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201 (575)
Q Consensus 129 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 201 (575)
.|.+.+..+...++..-....+++++...+-.+.. | +... .+.++-+ -.=++++++.++..=.+-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 45666677777888877778889999888877654 2 2211 2233333 334678999999888889999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008183 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSG 231 (575)
Q Consensus 202 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 231 (575)
+|+..+++.+.+.+++..|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999988888777654
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.95 E-value=24 Score=32.15 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=11.7
Q ss_pred HHHccCCHHHHHHHHhh
Q 008183 245 GYGKAGIVSDARRVFDE 261 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~ 261 (575)
.++-.+.+++|-++|.+
T Consensus 23 lfgg~~k~eeAadl~~~ 39 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYER 39 (288)
T ss_pred ccCCCcchHHHHHHHHH
Confidence 34455677888888776
No 287
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.90 E-value=1.3 Score=26.29 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
+|..+...+...|+.++|...+++.++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456666677777777777777777777666
No 288
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.48 E-value=8.7 Score=36.74 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=117.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH----HHHHHHhccCCh
Q 008183 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT----CLISAMGRAGRL 355 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~ 355 (575)
-.|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++..+ ..||...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888889998876 5668888888889999999999999999888543 356654443 334455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CC---chhHHHHHHHHHhCCCchHHHHHHH
Q 008183 356 EDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINP-YD---DSAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 356 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~---~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
++|++.-++. .+.| |.-+-.++...+...|+..++.++..+-...=. .. ...|-...-.+...+.++.|..+|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 4555 566677788888889999999998776543111 11 1234456667778899999999998
Q ss_pred HHhhCCCccCCcee
Q 008183 430 VMKDRRVRKEGGRS 443 (575)
Q Consensus 430 ~m~~~~~~~~~~~s 443 (575)
.=.-+.+.++++++
T Consensus 272 ~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 272 REIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHhhccchhh
Confidence 76555555555543
No 289
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.38 E-value=4.2 Score=35.82 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=67.1
Q ss_pred HhccCChHHHHHHHHhC----CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc
Q 008183 349 MGRAGRLEDAERIAMAM----PFEP---DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421 (575)
Q Consensus 349 ~~~~g~~~~A~~~~~~m----~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 421 (575)
+.+.|++++|..-|... |-.+ -.+.|..=..++.+.+.++.|..-..+.++++|....+...-..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45678888887776655 2111 1344555556778889999999999999999998877777778899999999
Q ss_pred hHHHHHHHHHhhCCC
Q 008183 422 DEVAEVRKVMKDRRV 436 (575)
Q Consensus 422 ~~a~~~~~~m~~~~~ 436 (575)
++|..-++++.+...
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999998887543
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.23 E-value=19 Score=31.64 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--CC----hhHH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE--YSFLAVLTALCNAGLAGESEKWIERMKVRYKLE--PG----LEHY 342 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~----~~~~ 342 (575)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..+|..+...+++..+.....+...-..-. ++ ...|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 333444455555555555555555444333322 233445555555555555555554442111110 11 1223
Q ss_pred HHHHHHHhccCChHHHHHHHHhC
Q 008183 343 TCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m 365 (575)
..|. +...|++.+|-+.|-..
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHcc
Confidence 3332 23356777777776655
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.75 E-value=15 Score=31.79 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=11.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
|.-+-.+.|++.+|.+.|..+..
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 33344455555555555555544
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.32 E-value=28 Score=31.36 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=86.1
Q ss_pred CCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008183 250 GIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327 (575)
Q Consensus 250 g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 327 (575)
|-++-|+--|.+.+. +.-...||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++..|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence 334444444443222 2233456666666667777777777777666643322222222222 2233466666665444
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAER-IAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD-- 404 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 404 (575)
..-....-.|-...|--++ -+.-++.+|.. +.++.. ..|..-|..-|-.+.- |++. .+.+++++.+...++
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTS 231 (297)
T ss_pred HHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHH
Confidence 3322211112122222222 22334555543 333332 3444555544443322 2111 122333333322222
Q ss_pred -----chhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 405 -----DSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 405 -----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..+|.-|..-|...|+.++|..+|+.....+
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3478889999999999999999998766543
No 293
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.28 E-value=4 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
+|..+...|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555566666666666555553
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.16 E-value=23 Score=30.28 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=50.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhccCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLE-HYTCLISAMGRAGRLEDAERIAMAMP-FEPDAAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~ 389 (575)
.-.+.++.+++..++..+. -+.|... .-..-...+.+.|++.+|.++|+++. -.|....-..|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3345678888888888773 3456532 22222334677888888888888883 23333334455555554443333
Q ss_pred HHHHHHHHHhcCC
Q 008183 390 ASKMGKRLIDINP 402 (575)
Q Consensus 390 a~~~~~~~~~~~p 402 (575)
=....+++.+.++
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3444555555554
No 295
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.15 E-value=20 Score=29.49 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
.+.-+..+...|+-+.-.++++++.+ +-.|+......+..||.+.|+..++.+++.+..+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34456667778888888888877765 3456777777788888888888888888877743
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.03 E-value=4 Score=34.78 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=29.0
Q ss_pred ccCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 351 RAGRLEDAERIAMAMP-FEPD---AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 351 ~~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
+.++.+++..++..+. ++|. ..++... .+...|++.+|.++++.+.+..|..+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 4566666666666662 3443 2233222 234566666666666666555554443
No 297
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.64 E-value=9.9 Score=36.06 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=73.1
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 008183 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL--------NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA 300 (575)
Q Consensus 230 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 300 (575)
.|.+....+...++..-....+++++...+-+ +. .| ...+|-- ++-.-++++++-++..=.+.|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyK-lRhs~~a~~~~~~~~~~~ir----lllky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYK-LRHSPNAWYLRNWTIHTWIR----LLLKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHH-HhcCcchhhhccccHHHHHH----HHHccChHHHHHHHhCcchhccc
Confidence 35555666667777777777888888888766 43 22 2223322 33345788999999888899999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008183 301 PDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332 (575)
Q Consensus 301 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 332 (575)
||..|++.+++.+.+.+++.+|.++.-.|..+
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999998888777554
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.64 E-value=7 Score=34.72 Aligned_cols=77 Identities=21% Similarity=0.141 Sum_probs=44.9
Q ss_pred HhcCch--HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhC---CCCchhHHHHHHHHHHhC
Q 008183 74 HSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLS---LHDKPFCGSALVHFYSRF 148 (575)
Q Consensus 74 ~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~ 148 (575)
+.+.|+ |++.|-.+...+ .. +....-..|..+.... |.+++.+++-.+++.. -.+|+.++.+|++.|-+.
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~---~l-~t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTP---EL-ETAELQYALATYYTKR-DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred hhccCcHHHHHHHHHHcCCC---CC-CCHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 455566 777777776655 33 3344444444444445 6667776666665542 245666666777777666
Q ss_pred CChHHHH
Q 008183 149 RSPDNAK 155 (575)
Q Consensus 149 g~~~~A~ 155 (575)
|+++.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 6666653
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.30 E-value=45 Score=32.89 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINP----YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 369 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
....+|..+...+++.|.++.|...+.++.+.++ ..+.....-+......|+.++|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999887552 24556677788899999999999998887763
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.03 E-value=4.2 Score=34.03 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=26.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 384 HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.++.++++.++..+.-+.|..+..-..-...+...|+|++|.++|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555555555554444444444455555555555555555443
No 301
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.73 E-value=28 Score=30.12 Aligned_cols=133 Identities=17% Similarity=0.073 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 008183 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP 301 (575)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 301 (575)
++.+.+.+.+++|+...+..+++.+.+.|++..-..++.- ++-|
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------------------------------------~Vi~ 58 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------------------------------------HVIP 58 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------------------------------------cccC
Confidence 3444555667777777777777777777776655555443 3444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008183 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFS 381 (575)
Q Consensus 302 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 381 (575)
|.......+-.... ....+.++=-.|..+.+ ..+..+++.+...|++-+|.++.+..+ .-+......++.+-
T Consensus 59 DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~-~~~~~~~~~fLeAA 130 (167)
T PF07035_consen 59 DSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYH-KVDSVPARKFLEAA 130 (167)
T ss_pred CcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcC-CcccCCHHHHHHHH
Confidence 44444433322221 22223333222322211 135566777778888888888887753 12222224455555
Q ss_pred HHcCChHHHHHHHHHHH
Q 008183 382 AIHGKADMASKMGKRLI 398 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~ 398 (575)
.+.+|...--.+++-..
T Consensus 131 ~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 131 ANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555544444444333
No 302
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.54 E-value=41 Score=31.88 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=35.8
Q ss_pred HHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC
Q 008183 211 AAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264 (575)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 264 (575)
....++...+..+++...... +-+...--.+...|...|+.+.|..++.. ++
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~-lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAA-LP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHh-Cc
Confidence 445677777777777776653 33455566677778888888888888877 55
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.24 E-value=2.7 Score=26.13 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555555566666666655555543
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.96 E-value=20 Score=37.25 Aligned_cols=148 Identities=16% Similarity=0.038 Sum_probs=100.1
Q ss_pred cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHH
Q 008183 249 AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYS-FLAVLTALCNAGLAGESEKWIE 327 (575)
Q Consensus 249 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~ 327 (575)
.|+++.|..++-. ++ ...-+.++.-+-+.|-.++|+++ .||... |.. ..+.|+++.|.++..
T Consensus 599 rrd~~~a~~vLp~-I~---k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 599 RRDLEVADGVLPT-IP---KEIRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hcccccccccccc-Cc---hhhhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 4666666665554 44 22334455556667777776654 333322 322 246799999988766
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
+. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+.+..|.
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 44 346678999999999999999999988753 256777778888887776666666666665443
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH
Q 008183 408 YVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
-..+|...|+++++.+++..-
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHhc
Confidence 345678899999988887643
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.74 E-value=79 Score=34.55 Aligned_cols=115 Identities=9% Similarity=-0.008 Sum_probs=71.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHH----HHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhc
Q 008183 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAM----IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL 214 (575)
Q Consensus 139 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 214 (575)
..-+++..+..-++.|..+-+.-.. |...-..+ ..-+.+.|++++|..-|-+-... +.|. .++.-+-..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4456666677777777777655433 22222222 23345678888888877765432 2232 233444444
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
.....-..+++.+.+.|+ .+...-+.|+++|.|.++.++-.++.+.
T Consensus 411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 555555667777777774 4556677788888888888887777776
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.65 E-value=2.2 Score=25.64 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=13.4
Q ss_pred CCchhHHHHHHHHHHccCCHHHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDAR 256 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~ 256 (575)
|-+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344555555555666666555553
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.61 E-value=23 Score=30.62 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=74.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh-HHHHHHH--HHhccC
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLE-HYTCLIS--AMGRAG 353 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~--~~~~~g 353 (575)
+++.+..++|+.-|.++.+.|...= ............+.|+...|...|.++... .-.|... -...|=. .+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 4566778888888888877764321 112222333456778888888888887433 2233321 2222222 345678
Q ss_pred ChHHHHHHHHhCCC--CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 354 RLEDAERIAMAMPF--EPD-AAVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 354 ~~~~A~~~~~~m~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
.+++.....+.+.. .|- ...-..|.-+-.+.|++..|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888877777731 222 33445566666788888888888888776
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.59 E-value=50 Score=31.50 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=14.6
Q ss_pred HHHHhCCCchHHHHHHHHH
Q 008183 413 NVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~m 431 (575)
....+.++|++|.+.++--
T Consensus 254 ~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhhcCHHHHHHHHHHH
Confidence 4466789999999988743
No 309
>PRK12798 chemotaxis protein; Reviewed
Probab=81.25 E-value=62 Score=32.38 Aligned_cols=184 Identities=17% Similarity=0.178 Sum_probs=115.6
Q ss_pred cCCHHHHHHHHhhhCC----CCChhhHHHHHHH-HHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHH
Q 008183 249 AGIVSDARRVFDENLS----VLNSIAWNAMMAG-YAQQGDQSTVLELFHLLEMR--GFAPDEYSFLAVLTALCNAGLAGE 321 (575)
Q Consensus 249 ~g~~~~A~~~~~~~~~----~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~ 321 (575)
.|+-++|.+.+.. +. ++....|-+|+.+ .....++.+|+++|+...-. |--.......--+....+.|+.++
T Consensus 125 ~Gr~~~a~~~La~-i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 125 SGRGREARKLLAG-VAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred cCCHHHHHHHhhc-CChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 5778888888877 54 3445567777666 44566888999999887653 222223445555556788999999
Q ss_pred HHHHHHHHHHhcCCCCChhHH-HHHHHHHh---ccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 322 SEKWIERMKVRYKLEPGLEHY-TCLISAMG---RAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 322 a~~~~~~m~~~~~~~p~~~~~-~~li~~~~---~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
+..+-..+..++.-.|-..-| ..+...+. ..-..+.-..++..|.-.--...|-.+...-...|+.+.|...-++.
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 988887777776655543322 22333333 33345555666777742223678888888889999999999999998
Q ss_pred HhcCCCCchhHHHHHHHHH-----hCCCchHHHHHHHHHhhC
Q 008183 398 IDINPYDDSAYVIVANVLS-----GVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 398 ~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~~ 434 (575)
..+... ...-...+..|. -..+++++.+.+..+-..
T Consensus 284 ~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 284 LKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 886632 222233444443 234456666665554433
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.19 E-value=1.1 Score=37.77 Aligned_cols=84 Identities=5% Similarity=0.066 Sum_probs=58.3
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchH
Q 008183 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVD 184 (575)
Q Consensus 105 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 184 (575)
++..+.+.+ .+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..|-+.|.+++
T Consensus 13 vi~~~~~~~-~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERN-QPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT--GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 455666666 7777778888888777667788889999999999888888888774332 333456666666677767
Q ss_pred HHHHHHHh
Q 008183 185 SLSVFADM 192 (575)
Q Consensus 185 A~~~~~~m 192 (575)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66666655
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.83 E-value=3.7 Score=24.26 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.05 E-value=15 Score=28.18 Aligned_cols=62 Identities=10% Similarity=-0.022 Sum_probs=44.0
Q ss_pred chHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
.-++.+-++.+....+.|++....+.++||.+.+++..|.++++-+.... ..+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 34566666777777888999999999999999999999998888776331 223345555543
No 313
>PRK09687 putative lyase; Provisional
Probab=79.86 E-value=58 Score=31.13 Aligned_cols=229 Identities=10% Similarity=-0.023 Sum_probs=138.4
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccH----HHHHHHHHHHHHhC
Q 008183 156 KVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM----EQCRVIHGHAVVSG 231 (575)
Q Consensus 156 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~g 231 (575)
.+++.+..+|.......+.++...|. .++...+..+.. .+|...-...+.++...|+. +.+...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 34444456677777777777777774 445555555544 34666666667777777753 3455555555332
Q ss_pred CCCchhHHHHHHHHHHccCC-----HHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 008183 232 LDRNVIVGTGLIDGYGKAGI-----VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306 (575)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 306 (575)
.++..+....+.+++..+. ...+.+.+...+..++...-...+.++.+.|+ .+|+..+-.+.+ .+|...-
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR 176 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVR 176 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHH
Confidence 5777777777777777653 22344444443445566555666777777776 456666666665 3455555
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008183 307 LAVLTALCNAG-LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385 (575)
Q Consensus 307 ~~ll~a~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 385 (575)
...+.++.+.+ .-..+...+..+. -.++..+-..-+.++++.|+..-.-.+++.+. .++. ....+.++...|
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L----~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig 249 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAML----QDKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh----cCCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcC
Confidence 55566666543 1334555555453 24566777778888888888544444445444 3442 346677777777
Q ss_pred ChHHHHHHHHHHHhcCC
Q 008183 386 KADMASKMGKRLIDINP 402 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~p 402 (575)
+. +|...+.++.+..|
T Consensus 250 ~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 250 DK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CH-hHHHHHHHHHhhCC
Confidence 74 67777777777666
No 314
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.33 E-value=89 Score=33.30 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
+.+.|..++.+..+.++.....-...+..+.. ++++.+.-....+.+.|..
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 56667777777766663222222222233333 6666666666666555543
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.51 E-value=2.9 Score=23.20 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHH
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44566777777777777777664
No 316
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.29 E-value=12 Score=31.44 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=61.8
Q ss_pred cHHHHHHHHhHcCCChHHHHHHHccCC---------CCChhhHHHHHHHHhcCch----HHHHHHHHhhCCCCCcCCChh
Q 008183 34 SIYNNLITNYSKSNLLSYSLRLFNHIP---------SPNIVSWTALISAHSNSPL----SLNIFLSMLRHPTLSFLPNQR 100 (575)
Q Consensus 34 ~~~~~li~~~~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~----a~~~~~~m~~~~~~~~~p~~~ 100 (575)
...|.++.-.+..+++.-...+++.+. ..+-.+|+.++.+.++... +..+|..|.+.+ .+++..
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~---~~~t~~ 116 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND---IEFTPS 116 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC---CCCCHH
Confidence 466888888888888888888888775 2456678999999877655 888999998877 888888
Q ss_pred hHHHHHHHHhhch
Q 008183 101 TLASLFKTCASLS 113 (575)
Q Consensus 101 t~~~ll~~~~~~~ 113 (575)
-|..++++|.+..
T Consensus 117 dy~~li~~~l~g~ 129 (145)
T PF13762_consen 117 DYSCLIKAALRGY 129 (145)
T ss_pred HHHHHHHHHHcCC
Confidence 9999998887754
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.12 E-value=5.1 Score=24.82 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45556666666666666666665554
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.07 E-value=41 Score=28.38 Aligned_cols=46 Identities=15% Similarity=-0.088 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRN-VIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
..+.+.+..++..+.-. .|+ ...-..-.-.+...|++++|..+|++
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~ 69 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRE 69 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHh
Confidence 45555555555555433 222 11122223334556666666666666
No 319
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.02 E-value=4.2 Score=38.86 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=71.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCh
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFE-PDAAVWRALLSFSAIHGKA 387 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~ 387 (575)
+-|.+.|.+++|...|..-. .+.| +..++..-..+|.+..++..|+.=-+.. .+. .-...|..=..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 34788999999999987553 4567 7778888888999998888776544433 111 1133454445555556888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH
Q 008183 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 388 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 424 (575)
.+|.+-++..++++|.+.. |-..|.......++
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 8999999999999997543 33444444444443
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.88 E-value=19 Score=28.04 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=39.6
Q ss_pred HHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 184 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+..+-++.+-...+.|++....+.|++|.+.+++..|.++++-+...- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455666666677888999999999999999999999988888776542 233336665553
No 321
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.18 E-value=32 Score=26.69 Aligned_cols=86 Identities=6% Similarity=-0.149 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC
Q 008183 116 FLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195 (575)
Q Consensus 116 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 195 (575)
-++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45555555555443311 222222233445677888888888888877888888777654 666666666666666555
Q ss_pred CCCcCHHHHH
Q 008183 196 DVGSTMYCVS 205 (575)
Q Consensus 196 g~~p~~~t~~ 205 (575)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 4 34444443
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.02 E-value=23 Score=31.52 Aligned_cols=73 Identities=14% Similarity=-0.054 Sum_probs=41.6
Q ss_pred hHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHccCCHHHHH
Q 008183 183 VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS---GLDRNVIVGTGLIDGYGKAGIVSDAR 256 (575)
Q Consensus 183 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A~ 256 (575)
+.|++.|-.+...+.--+......+..-| ...+.+++.+++...++. +-.+|+.++.+|++.|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55666666665555443433333333333 355666666666655443 22556677777777777777777664
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.86 E-value=30 Score=26.84 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=56.3
Q ss_pred CccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch-HHHHHHHHhhCCCC
Q 008183 15 STDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL-SLNIFLSMLRHPTL 93 (575)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~-a~~~~~~m~~~~~~ 93 (575)
.++|..|-+++...|-....+--.-+..+...|++++|..+.+.++-||...|-+|-..-.-.+. ...-+..|...|
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg-- 98 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRLGLGSALESRLNRLAASG-- 98 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHHhhccHHHHHHHHHHHHhCC--
Confidence 34566666666655532222222234567789999999999999999999999998877655555 455555666665
Q ss_pred CcCCChhhHH
Q 008183 94 SFLPNQRTLA 103 (575)
Q Consensus 94 ~~~p~~~t~~ 103 (575)
.|...+|.
T Consensus 99 --~p~lq~Fa 106 (115)
T TIGR02508 99 --DPRLQTFV 106 (115)
T ss_pred --CHHHHHHH
Confidence 45544543
No 324
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.72 E-value=46 Score=27.99 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcC---------CCCcchHHHHHHHHHhCCC-chHHHHHHHHhHHCCCCcCHHHHHHH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIR---------ERDVVCYGAMIVGFAQNSR-LVDSLSVFADMRSSDVGSTMYCVSGA 207 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 207 (575)
.|.++.-.+..++......+++.+. ..+..+|++++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555555555555555555442 1356677778877755554 33466777777777777777778777
Q ss_pred HHHHHhc
Q 008183 208 LRAAAEL 214 (575)
Q Consensus 208 l~~~~~~ 214 (575)
+.+|.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7777654
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.38 E-value=9.6 Score=34.20 Aligned_cols=64 Identities=22% Similarity=0.194 Sum_probs=45.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 342 YTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
.+..++.+.+.+.+++|+...+.- +-+| |..+-..|+..++..|++++|..-++-.-++.|...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345566777788888888776544 4455 466667778888888888888877777777776543
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.16 E-value=1 Score=37.96 Aligned_cols=53 Identities=17% Similarity=-0.008 Sum_probs=30.8
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 209 RAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
..+.+.+.++....+++.+.+.+...+....+.++..|++.++.++..++++.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~ 67 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT 67 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc
Confidence 33444455555555566666555455566777777777777666666666554
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.33 E-value=6.1 Score=22.89 Aligned_cols=27 Identities=30% Similarity=0.167 Sum_probs=15.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
+..++.+.|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334455556666666666666555553
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.85 E-value=6.8 Score=21.80 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 374 WRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 374 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444445555555555555555554443
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.26 E-value=6.1 Score=26.63 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=25.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 376 ALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 376 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
.+.-++.+.|+++.|.+..+.+++.+|.|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566788999999999999999999998864
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.91 E-value=47 Score=29.04 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 387 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
+++|...|+++.+.+|.| ..|..-+.+.. +|-.+..++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 566677777778888866 46666556553 567777777776653
No 331
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.42 E-value=92 Score=29.35 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=81.4
Q ss_pred ccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHH-HH
Q 008183 248 KAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLL----EMRGFAPDEYSFLAVLTALCNAGLAG-ES 322 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~a~~~~g~~~-~a 322 (575)
+.+++++|.+++.. =...+.++|+...|-++-.-| .+.+.++|......++..+...+.-+ +-
T Consensus 2 ~~kky~eAidLL~~------------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r 69 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS------------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER 69 (260)
T ss_dssp HTT-HHHHHHHHHH------------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH
T ss_pred ccccHHHHHHHHHH------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH
Confidence 45677777777765 223355666666555544333 34566777766666666555443211 12
Q ss_pred HHHHHHHHH--hcCCC--CChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 323 EKWIERMKV--RYKLE--PGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 323 ~~~~~~m~~--~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
..+.+.+.. +.+-. -+......+...|.+.|++.+|+..|-.-. .|+...+..++.-....|...+
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e--------- 139 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSE--------- 139 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS-----------
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcc---------
Confidence 222222211 11222 245677788888999999999988875443 3333333223333333333332
Q ss_pred hcCCCCchhHH-HHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 399 DINPYDDSAYV-IVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 399 ~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...|. ..+--|.-.|+...|...++...++
T Consensus 140 ------~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 140 ------ADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 23222 3445577788899999988877754
No 332
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.39 E-value=7 Score=22.87 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 406 SAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+..+...|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778999999999999999999987653
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.19 E-value=1.8e+02 Score=32.22 Aligned_cols=255 Identities=9% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 252 (575)
|.--.+.|+++.|-.++++-... ....+.+..-......+-..-+..++...-.-+-......++
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~---------------L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~ 431 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQ---------------LFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRL 431 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhh---------------hhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccCh
Q ss_pred HHHHHHHhhhCCCCChh-----------hHHHHHHH-HHHcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhc
Q 008183 253 SDARRVFDENLSVLNSI-----------AWNAMMAG-YAQQGDQSTVLELFHLLEMR----GFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 253 ~~A~~~~~~~~~~~~~~-----------~~~~li~~-~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~a~~~~ 316 (575)
++|..+..+ ....=.. .|+++-.- ....|++++|+++-+..... -..+..+.+..+..+..-.
T Consensus 432 ~ea~~li~~-l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~ 510 (894)
T COG2909 432 AEAETLIAR-LEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIR 510 (894)
T ss_pred HHHHHHHHH-HHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHh
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH-----HhccC--ChHHHHHHHHhC------CCCCCHHHHHHHHHHHHH
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISA-----MGRAG--RLEDAERIAMAM------PFEPDAAVWRALLSFSAI 383 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-----~~~~g--~~~~A~~~~~~m------~~~p~~~~~~~ll~~~~~ 383 (575)
|++++|..+.... .+..-.-+...+...+.. +-..| ..++.+..|... ...........-+..+..
T Consensus 511 G~~~~Al~~~~~a-~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~ 589 (894)
T COG2909 511 GELTQALALMQQA-EQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRA 589 (894)
T ss_pred chHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q ss_pred cCChHHHHHHHHHHHhcC----CCCchhHHH---HHHHHHhCCCchHHHHHHHHHhhCCCccCCceeE
Q 008183 384 HGKADMASKMGKRLIDIN----PYDDSAYVI---VANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSW 444 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~----p~~~~~~~~---l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 444 (575)
.-+.+.+..-.....+.+ |.....+.. |+..+...|+.++|...++++..-...+.+.+.|
T Consensus 590 ~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 590 WLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
No 334
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=69.34 E-value=1.5e+02 Score=31.07 Aligned_cols=382 Identities=15% Similarity=0.058 Sum_probs=213.3
Q ss_pred cccHHHHHHHHhHcCCChHHHHHHHccCC--CCChhh-HHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHH
Q 008183 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVS-WTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASL 105 (575)
Q Consensus 32 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~-~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~l 105 (575)
+-..++.||.---....++.++.+++.+. -|...- |-..-.-=.+.|. +..+|++-... ++-+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a----ip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA----IPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----hhhHHHHHHHH
Confidence 44456666655445555566777777664 344432 2222222223333 78888887764 66677777777
Q ss_pred HHHHhhchhhHHHHHHHHHHHHhh-CCC-CchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHh---C-
Q 008183 106 FKTCASLSHAFLFGLSLHSLSLKL-SLH-DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQ---N- 179 (575)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~---~- 179 (575)
+.-+....++.+..+..++.++.. |.. .+...|...|..-..++++.....+++.+.+-....|+..-..|.+ .
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcC
Confidence 776666554888888888887765 322 2345677788777888899999999988876444444433333322 2
Q ss_pred -----CCchHHHHHHHHhHH--------------------CCCCcCHHH--HHHHHHHHHh-------cccHHHHHHHHH
Q 008183 180 -----SRLVDSLSVFADMRS--------------------SDVGSTMYC--VSGALRAAAE-------LAAMEQCRVIHG 225 (575)
Q Consensus 180 -----g~~~~A~~~~~~m~~--------------------~g~~p~~~t--~~~ll~~~~~-------~~~~~~a~~~~~ 225 (575)
-..+++.++-..... .+.+.+..+ .+.+...+.- .......+..++
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE 279 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFE 279 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhh
Confidence 112222222221111 000000001 1111111110 011111111122
Q ss_pred HHHHhC-------CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 226 HAVVSG-------LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV--LNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 226 ~~~~~g-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
.-++.- .+++..+|+.-++--.+.|+.+.+.-+|+..+-+ .=...|--.+.-.-..|+.+-|..++..-.+
T Consensus 280 ~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 280 EGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 211111 1224567788888888889999888888873221 1112233333333334888877777665544
Q ss_pred cCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHH---HHHHhC-CCCC
Q 008183 297 RGF--APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAE---RIAMAM-PFEP 369 (575)
Q Consensus 297 ~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p 369 (575)
--+ .|....+.+.+ +-..|+.+.|..+++.+..+. |+ +..-..-+....+.|..+.+. .++... +..-
T Consensus 360 i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~ 434 (577)
T KOG1258|consen 360 IHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE 434 (577)
T ss_pred hcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc
Confidence 322 33333344333 345789999999999986543 65 334444456677888888887 444444 1122
Q ss_pred CHHHHHHHHH-----HHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCch
Q 008183 370 DAAVWRALLS-----FSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 370 ~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 422 (575)
+......+.- .+...++.+.|..++.++.+..|++...|..+++.....+...
T Consensus 435 ~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 435 NNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 2222222222 2344688999999999999999999999999999887776433
No 335
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.14 E-value=30 Score=34.91 Aligned_cols=123 Identities=17% Similarity=0.164 Sum_probs=78.1
Q ss_pred HHHcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH
Q 008183 278 YAQQGDQSTVLE-LFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356 (575)
Q Consensus 278 ~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 356 (575)
-...|+...|-+ +|..+....-.|+.+.+.+.| ..+.|+++.+.+.+.... + -+.....+-.+++....+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~-~-~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVE-K-IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchh-h-hhcCCchHHHHHHHhhhchhhHH
Confidence 344566666554 555555555567776666655 467788888888877552 2 23445667778888888888888
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 357 DAERIAMAM-PF-EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 357 ~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
+|..+-..| +- --+..............|-++++...++++..++|+.
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 888887776 21 1122222233333455677888888888888777543
No 336
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.14 E-value=1.8e+02 Score=31.46 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCc-------hHHHHHHHHhHHCCCCcCHH
Q 008183 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRL-------VDSLSVFADMRSSDVGSTMY 202 (575)
Q Consensus 135 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p~~~ 202 (575)
..+| ++|-.+.|||++++|.++..+... +....+-..+..|+.+.+- ++...-|++........|++
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3445 477788899999999999944432 4456777788888775332 34555566655443333554
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.54 E-value=4.3 Score=38.80 Aligned_cols=86 Identities=12% Similarity=0.010 Sum_probs=63.2
Q ss_pred HHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 424 (575)
.-|.++|.+++|.+.|.+. ...| |++++..=..+|.+.+.+..|+.-...++.++..-..+|..-+.+-...|+..+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3588999999999999764 6677 8899988899999999999999888888887754444455444444455555555
Q ss_pred HHHHHHHh
Q 008183 425 AEVRKVMK 432 (575)
Q Consensus 425 ~~~~~~m~ 432 (575)
.+-.+...
T Consensus 185 KkD~E~vL 192 (536)
T KOG4648|consen 185 KKDCETVL 192 (536)
T ss_pred HHhHHHHH
Confidence 55544443
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.80 E-value=12 Score=21.95 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 406 SAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998764
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.50 E-value=58 Score=34.12 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=43.8
Q ss_pred hCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 008183 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 226 (575)
+.|+++.|.++..+. .+..-|..|-.+..+.|++..|.+-|.+.+. |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 344444444443322 2344455555555555555555555554433 34444444444544433333333
Q ss_pred HHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 227 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
..+.|. .|.-..+|...|+++++.+++.+
T Consensus 718 ~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 333331 12222334444555555555443
No 340
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.27 E-value=1.6e+02 Score=29.96 Aligned_cols=149 Identities=8% Similarity=-0.026 Sum_probs=66.9
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHH--HHHHHHHHHhc
Q 008183 141 LVHFYSRFRSPDNAKKVFDEIRER----DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC--VSGALRAAAEL 214 (575)
Q Consensus 141 li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~ 214 (575)
-+...++.|+.+.+..+++.-... +..-++.+. ..+..|+. ++++.+.+.|..|+... -.+.+...+..
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~-~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~ 145 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLH-LATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMM 145 (413)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHH-HHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Confidence 344555677777766666543321 111222222 23344554 33444445555554321 12234444455
Q ss_pred ccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHccCCHHHHHHHHhhhCCCCChhh---HHHHHHHHHHcCChHHHHH
Q 008183 215 AAMEQCRVIHGHAVVSGLDRNVI--VGTGLIDGYGKAGIVSDARRVFDENLSVLNSIA---WNAMMAGYAQQGDQSTVLE 289 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~ 289 (575)
|+.+.+. .+.+.|..++.. ...+-+...+..|+.+-+.-+++. -..++... ..+.+...+..|+.+
T Consensus 146 ~~~~~v~----~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~---- 216 (413)
T PHA02875 146 GDIKGIE----LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIENNKID---- 216 (413)
T ss_pred CCHHHHH----HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHH----
Confidence 6655433 334445433321 122233444556776666666554 33332221 123333334555543
Q ss_pred HHHHHHHcCCCCCH
Q 008183 290 LFHLLEMRGFAPDE 303 (575)
Q Consensus 290 l~~~m~~~g~~p~~ 303 (575)
+.+.+.+.|..|+.
T Consensus 217 iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHHCCcCcch
Confidence 44445556666654
No 341
>PRK10941 hypothetical protein; Provisional
Probab=66.14 E-value=33 Score=32.48 Aligned_cols=62 Identities=8% Similarity=0.038 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+.|-.+|.+.++++.|.++.+.++.+.|+++.-+.--.-+|.+.|.+..|..-++...++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45667788899999999999999999999999887888888899999999999988877654
No 342
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.84 E-value=37 Score=27.56 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 286 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
+..+-++.+....+.|+.......+.||.+.+++..|.++|+.++.+.| +....|-.++ ++-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH---------HHHHHHHHHh
Confidence 4455566666777999999999999999999999999999998865543 3333565554 3444556666
Q ss_pred C
Q 008183 366 P 366 (575)
Q Consensus 366 ~ 366 (575)
|
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 5
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.37 E-value=33 Score=30.92 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=26.7
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHh
Q 008183 208 LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFD 260 (575)
Q Consensus 208 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (575)
++.+.+.+.+.++......-++.. +.|......+++.||-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 334444455555555544444432 4445555555666666666666655444
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.31 E-value=10 Score=24.37 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 410 IVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47888999999999999999887543
No 345
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.17 E-value=1.1e+02 Score=28.02 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=30.8
Q ss_pred hccCChHHHHHHHHhCC---CCCCHHHHHH---HH-HHHHH--cCChHHHHHHHHHHHhcCCCCc
Q 008183 350 GRAGRLEDAERIAMAMP---FEPDAAVWRA---LL-SFSAI--HGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m~---~~p~~~~~~~---ll-~~~~~--~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
+..+++.+|.++|++.. +..+..-|.. ++ .+++. ..|.-.+...+++..+.+|.-.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 45677788888887762 2222222321 11 12222 2555666777777777887543
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.53 E-value=1.3e+02 Score=28.27 Aligned_cols=259 Identities=12% Similarity=0.099 Sum_probs=146.8
Q ss_pred CCCCchhHHHHHHHHH-HhCCChHHHHHHHHhcCC--CCc-----chHHHHHHHHHhCCCchHHHHHHHHhHH---CCCC
Q 008183 130 SLHDKPFCGSALVHFY-SRFRSPDNAKKVFDEIRE--RDV-----VCYGAMIVGFAQNSRLVDSLSVFADMRS---SDVG 198 (575)
Q Consensus 130 g~~~~~~~~~~li~~~-~~~g~~~~A~~~f~~m~~--~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~ 198 (575)
+-+||+..-|..-+.- .+..+.++|+.-|....+ +.. -+.-.+|..+.+.|++++.++.|.+|.. ..+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4455554433322111 133467777777776643 222 2334578888888999988888888753 1222
Q ss_pred --cCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-------
Q 008183 199 --STMYCVSGALRAAAELAAMEQCRVIHGHAVVS-----GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS------- 264 (575)
Q Consensus 199 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 264 (575)
-+..+.++++.-.+.+.+.+.-..+|+.-++. +-..--.+-+.|...|...|.+.+..+++++ +.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkq-Lh~SCq~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQ-LHQSCQTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHH-HHHHhcccc
Confidence 23456777777776666666666555543321 0011122345677788888888888777776 32
Q ss_pred -CCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----hcCCHHHHHH-HHHHH
Q 008183 265 -VLN-------SIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAPDEYSFLAVLTALC-----NAGLAGESEK-WIERM 329 (575)
Q Consensus 265 -~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~-~~~~m 329 (575)
+.| ...|..-|..|....+-.+-..+|++..... .-|..... .+|+-|. +.|.+++|.. +|+..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 111 2356667888888888888888888765332 33444333 4555553 4677777754 44443
Q ss_pred HHhcCC--CCC---hhHHHHHHHHHhccCC----hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008183 330 KVRYKL--EPG---LEHYTCLISAMGRAGR----LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKR 396 (575)
Q Consensus 330 ~~~~~~--~p~---~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 396 (575)
..+.- .|. ---|-.|..++.+.|- -++|. ...-.|.....+.|+.+|.. ++..+-++++..
T Consensus 259 -KNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 259 -KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred -hcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 33322 232 2335566677766652 12221 11234667888999999864 455555555443
No 347
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.25 E-value=1.1e+02 Score=31.11 Aligned_cols=194 Identities=11% Similarity=0.064 Sum_probs=93.6
Q ss_pred HHHhhCCCCchhH--HHHHHHHHHhCCChHHHHHHHHhcCCCC---cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCc
Q 008183 125 LSLKLSLHDKPFC--GSALVHFYSRFRSPDNAKKVFDEIRERD---VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS 199 (575)
Q Consensus 125 ~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 199 (575)
.+++.|..++... ..+.+...++.|+.+-+.-+++.=..++ ....+ -+...+..|+.+.+..+++ .|...
T Consensus 20 ~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~----~~~~~ 94 (413)
T PHA02875 20 RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKAVEELLD----LGKFA 94 (413)
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHHHHHHHHH----cCCcc
Confidence 3344565554432 3345556667777776665555432222 12233 3444567787766555443 23221
Q ss_pred CHH---HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHccCCHHHHHHHHhhhCCC---CChhhH
Q 008183 200 TMY---CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV--GTGLIDGYGKAGIVSDARRVFDENLSV---LNSIAW 271 (575)
Q Consensus 200 ~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 271 (575)
+.. .-.+.+...+..|+.+ +.+.+++.|..|+... ..+.+...+..|+.+-+.-+++. -.. .|..-+
T Consensus 95 ~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~ 169 (413)
T PHA02875 95 DDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGC 169 (413)
T ss_pred cccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCC
Confidence 111 0112334444556654 4555566676655321 23345556677888777766665 332 233333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 008183 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF---LAVLTALCNAGLAGESEKWIERMKVRYKLEPG 338 (575)
Q Consensus 272 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 338 (575)
+.+.. .+..|+.+ +.+.+.+.|..|+...- .+++......|+.+-+.-+ .+.|..++
T Consensus 170 TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L-----l~~gad~n 229 (413)
T PHA02875 170 TPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF-----IKRGADCN 229 (413)
T ss_pred CHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH-----HHCCcCcc
Confidence 33333 33445543 44555666766654321 2344433455665544433 23455555
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.77 E-value=1.6e+02 Score=29.31 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=49.3
Q ss_pred CHHHHHHH---HHHHHHcCChHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hCCCchHHHHHHHHHhh
Q 008183 370 DAAVWRAL---LSFSAIHGKADMASKMGKRLIDINPY-DDSAYVIVANVLS-GVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 370 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 433 (575)
|...|-+| +..+.+.|-+..|.++.+-+..++|. |+..-...|+.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445444 46778899999999999999999998 8877777888775 67778777777776554
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.40 E-value=1.4e+02 Score=28.44 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=36.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HhcCCCCChhH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMK----VRYKLEPGLEH 341 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 341 (575)
....|..+|.+.+|.++-+...... +.+...+-.++..+...|+--.+..-++.+. ...|+..+...
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3445666777777776666665542 2344555566666666666444444443332 23455555433
No 350
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.88 E-value=2e+02 Score=29.76 Aligned_cols=177 Identities=11% Similarity=0.067 Sum_probs=103.8
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
+.|....-+++..++..-...-.+.+..+++. ..+-..|..++..|.++ ..++-..+|+++.+..+ |.+.+..-+-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 34555556677777777666666666666444 44556777788888877 56777778887777533 3333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC------hhHHHHHHHHHhccCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPG------LEHYTCLISAMGRAGRLEDAERIAMAM----PFEPDAAVWRALLSFS 381 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~ 381 (575)
-+...++.+.+..+|.++..+ +-|. ...|.-|+..-+ .+.+....+..++ +...-.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 334447777777777766432 2331 234555544322 3444444444444 3233345555555666
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
....++++|.+++..+++.+..|..+-..++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 77778888888888777777666555555554443
No 351
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.66 E-value=1.1e+02 Score=29.02 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=9.7
Q ss_pred HHHHHhCCCchHHHHHH
Q 008183 173 IVGFAQNSRLVDSLSVF 189 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~ 189 (575)
|.+++..+++.+++.-.
T Consensus 90 IQALAEmnrWreVLsWv 106 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWV 106 (309)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 55566666666655433
No 352
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.42 E-value=50 Score=22.26 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 408 YVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...+.-++.+.|++++|.+..+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345778899999999999999988764
No 353
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=60.39 E-value=18 Score=20.60 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 385 GKADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 385 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
|+.+.+..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45678888888888877877777766554
No 354
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.23 E-value=1.2e+02 Score=32.82 Aligned_cols=180 Identities=14% Similarity=0.212 Sum_probs=99.6
Q ss_pred HHHHHHHHhCCCCch---hHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChh----------hHHHHHHHHHHcCChHHH
Q 008183 222 VIHGHAVVSGLDRNV---IVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSI----------AWNAMMAGYAQQGDQSTV 287 (575)
Q Consensus 222 ~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~----------~~~~li~~~~~~g~~~~A 287 (575)
.++..|.+.--.|++ .+...++-.|....+++...++.+. ++ -||.. .|.--++---+-|+-++|
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~-Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVED-LKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHH-HHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 455666655445554 4455566667777788888888877 44 33221 232233333456778888
Q ss_pred HHHHHHHHHc-C-CCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC-hHH
Q 008183 288 LELFHLLEMR-G-FAPDEYSFLAV-------LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR-LED 357 (575)
Q Consensus 288 ~~l~~~m~~~-g-~~p~~~t~~~l-------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~~ 357 (575)
+...-.|.+. | +.||.+....- -+.|...+..+.|..+|++ .+.++|...+--.+...+...|. ++.
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrk---aFeveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRK---AFEVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHH---HhccCchhhccccHHHHHHHhhhhccc
Confidence 8877777543 3 67886543322 1234455677788888874 45677875433222222222332 222
Q ss_pred HHHHH------HhC-CCCCC----HHHH--HHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 358 AERIA------MAM-PFEPD----AAVW--RALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 358 A~~~~------~~m-~~~p~----~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
..++- ..+ +-+-. ..-| ...+.+-.-.+++.+|.+..+.|.+++|+..
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 22211 111 11111 1112 2334555667899999999999999998753
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.58 E-value=1.2e+02 Score=28.67 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=49.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc-
Q 008183 275 MAGYAQQGDQSTVLELFHLLEM--RGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR- 351 (575)
Q Consensus 275 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 351 (575)
|.+++..+++.+++...-+--+ +.++|...-..+++ |++.+....+.++-...... .-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 5667777777777665433322 12555555555444 67777777777666655322 112223447776666553
Q ss_pred ----cCChHHHHHHHH
Q 008183 352 ----AGRLEDAERIAM 363 (575)
Q Consensus 352 ----~g~~~~A~~~~~ 363 (575)
.|.+++|+++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 588888887773
No 356
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.50 E-value=2.6e+02 Score=29.88 Aligned_cols=173 Identities=12% Similarity=0.051 Sum_probs=87.0
Q ss_pred hHHHHHHHHhcCCC-CcchHHHHH----HH-HHhCCCchHHHHHHHHhHH-------CCCCcCHHHHHHHHHHHHhc---
Q 008183 151 PDNAKKVFDEIRER-DVVCYGAMI----VG-FAQNSRLVDSLSVFADMRS-------SDVGSTMYCVSGALRAAAEL--- 214 (575)
Q Consensus 151 ~~~A~~~f~~m~~~-~~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~--- 214 (575)
...|.+.++..... ++..-..+. .+ +....+.+.|+..|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666665442 333222222 22 4455677788888877755 33 222333444444442
Q ss_pred -c-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc-cCCHHHHHHHHhhhCCCCChhhHHHHHHHHH----HcCChHHH
Q 008183 215 -A-AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-AGIVSDARRVFDENLSVLNSIAWNAMMAGYA----QQGDQSTV 287 (575)
Q Consensus 215 -~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A 287 (575)
. +.+.|..++....+.| .|+....-..+..... -.+...|.++|..+...-.+.+.-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 2 5566777777777776 3444433333333333 2456677777776444434333333322222 23356677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 288 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
..++++..+.| .|-..--...+..+.. +..+.+...+..+
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 77777777666 3333332333333333 5555555444434
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.23 E-value=25 Score=22.59 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=11.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 008183 275 MAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 275 i~~~~~~g~~~~A~~l~~~m~~ 296 (575)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555543
No 358
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=56.24 E-value=2.8e+02 Score=29.69 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-cchHHHHHHHHHhCCCchHHHHHHHHhHHC
Q 008183 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERD-VVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195 (575)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 195 (575)
....++.|+...... +.++-..+++++.. . ...|..++++....|-.....-+.+.+...
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 344556666655433 55556666665544 3 567777777777777655444444444433
No 359
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=55.60 E-value=52 Score=33.26 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=37.7
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 362 AMAMPFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 362 ~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
|...+++|. ..+..+-+..+.+++++..|..+.+++++++|..... ++|.+++..-.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a--------------~qArKil~~~e 347 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA--------------EQARKILQACE 347 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH--------------HHHHHHHHHHC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH--------------HHHHHHHHHHh
Confidence 333456664 4566777778889999999999999999999865322 46777776554
No 360
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.60 E-value=8.9 Score=36.85 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=59.1
Q ss_pred ccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHH
Q 008183 351 RAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVR 428 (575)
Q Consensus 351 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 428 (575)
..|.+++|.+.|... ++.|. ...|.-=.+++.+.++...|++-+...++++|+...-|-.-..+-...|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 356677777776655 33443 4445445566667777777777777777777776666666666666777777777777
Q ss_pred HHHhhCCCccC
Q 008183 429 KVMKDRRVRKE 439 (575)
Q Consensus 429 ~~m~~~~~~~~ 439 (575)
....+.++.+.
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 77776666543
No 361
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=55.04 E-value=2.1e+02 Score=27.76 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=15.7
Q ss_pred ChHHHHHHHHhc-C-CCCcchHHHHHHHH
Q 008183 150 SPDNAKKVFDEI-R-ERDVVCYGAMIVGF 176 (575)
Q Consensus 150 ~~~~A~~~f~~m-~-~~~~~~~~~li~~~ 176 (575)
+++.+.++...+ + +++...|..++..+
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 456677777777 3 45666777666543
No 362
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.48 E-value=22 Score=33.74 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 208 (575)
-||..|..-.+.||+++|++++++.++.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36788888899999999999999998888766656655433
No 363
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.43 E-value=2.4e+02 Score=28.34 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=35.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEY--SFLAVLTALCN--AGLAGESEKWIERMK 330 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~--~g~~~~a~~~~~~m~ 330 (575)
+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34678899999999998876 555554 34444455543 557788888888763
No 364
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.73 E-value=2.8e+02 Score=28.82 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=85.5
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
|....-+++..+.++-.+.-...+..+|..-| -+...|..++..|... .-+.-..+++.+++..+ .|+....-|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33445566666666666666677777776643 4555666667666666 33444556666666543 23444445555
Q ss_pred HHHccCCHHHHHHHHhhhCC----CCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh
Q 008183 245 GYGKAGIVSDARRVFDENLS----VLNS----IAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~ 315 (575)
.|-+ ++.+.+...|.+++. .+.. ..|.-++.. -..+.+..+.+..+++.. |..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 666777666665221 1111 123333221 123444555555555432 344444555555566666
Q ss_pred cCCHHHHHHHHHHH
Q 008183 316 AGLAGESEKWIERM 329 (575)
Q Consensus 316 ~g~~~~a~~~~~~m 329 (575)
..++++|.+++..+
T Consensus 218 ~eN~~eai~Ilk~i 231 (711)
T COG1747 218 NENWTEAIRILKHI 231 (711)
T ss_pred ccCHHHHHHHHHHH
Confidence 77777777777666
No 365
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.45 E-value=46 Score=25.34 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 392 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..++..++.+|.|...-..+...+...|++++|.+.+-.+..+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34555566778887788888888888888888888877776653
No 366
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=53.07 E-value=3.3e+02 Score=29.49 Aligned_cols=48 Identities=10% Similarity=0.031 Sum_probs=33.6
Q ss_pred HHcCChHHHHHHHHHHHhcC---CC------CchhHHHHHHHHHhCCCchHHHHHHH
Q 008183 382 AIHGKADMASKMGKRLIDIN---PY------DDSAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
...+++..|....+.+.+.. |+ .+..+...+-.+-..|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 35688989999888888643 22 12334444555667799999999997
No 367
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.05 E-value=4e+02 Score=30.50 Aligned_cols=256 Identities=11% Similarity=-0.008 Sum_probs=132.5
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 008183 155 KKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR 234 (575)
Q Consensus 155 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 234 (575)
..+...+..+|...--..+..+.+.+. .++...+..... .+|...-...+.++...+........+..+++ .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 455555566777777777777777665 345555555543 34444444555555444221111223333333 25
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 314 (575)
|..+....+.++...+.-+ ...+... +..+|...-...+.++.+.+..+.. .... -.++...-.....++.
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~~-L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAAA-LGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHHH-hcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHH
Confidence 6666666677666543211 2223333 6667766666666666665544321 1121 2345555556666666
Q ss_pred hcCCHHH-HHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008183 315 NAGLAGE-SEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 315 ~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
..+..+. +...+..+.. .+|...-.+.+.++++.|..+.+...+...-..+|...-...+.++...+. +++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 6654332 2333333421 456677777788888888765553333333225666666666777766664 344444
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 394 GKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 394 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+..+++ +| +..+-...+.++.+.+.-..+...+....+
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 444442 22 334555556666654323345555554443
No 368
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=53.03 E-value=2.5e+02 Score=28.03 Aligned_cols=186 Identities=13% Similarity=0.090 Sum_probs=111.3
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHH--HHHHHHcCCCCCHHHHHHH
Q 008183 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL--FHLLEMRGFAPDEYSFLAV 309 (575)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l--~~~m~~~g~~p~~~t~~~l 309 (575)
...+..+...+++.|...++|+.--+.... ..-+.|+...|+.- .+-|.-..-.||..|-..+
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~---------------Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~l 112 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQIRL---------------LSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKL 112 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHH---------------HHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHH
Confidence 344556667777777777777754333322 22356666666542 2333333345666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHH------------
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRAL------------ 377 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------ 377 (575)
+..+.. +.++. +|-+. + .+..-..|...+-.+|++++|..++.+.+ +.||+++
T Consensus 113 i~tLr~---Vtegk-IyvEv-E------RarlTk~L~~ike~~Gdi~~Aa~il~el~----VETygsm~~~ekV~fiLEQ 177 (439)
T KOG1498|consen 113 IETLRT---VTEGK-IYVEV-E------RARLTKMLAKIKEEQGDIAEAADILCELQ----VETYGSMEKSEKVAFILEQ 177 (439)
T ss_pred HHHHHH---hhcCc-eEEee-h------HHHHHHHHHHHHHHcCCHHHHHHHHHhcc----hhhhhhhHHHHHHHHHHHH
Confidence 654422 11111 11111 0 01222346667778899999999988875 3445444
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcC---CCC----chhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEE
Q 008183 378 LSFSAIHGKADMASKMGKRLIDIN---PYD----DSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEV 447 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 447 (575)
+..|...+|+-.|.-+-+++...- |+- ...|..++......+.+=++-+.++..-+-|-.+.+..-|+.+
T Consensus 178 mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 178 MRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhh
Confidence 356777888888887777766522 221 2368888899889999999999999888776554433346644
No 369
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.82 E-value=1e+02 Score=24.49 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=28.7
Q ss_pred CHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 251 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
++++.++.+.+ ..-|..|+.-|...|..++|++++.++..
T Consensus 28 ~~~~~e~~L~~------~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKE------HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHH------cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34444444443 23578888888889999999999888876
No 370
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.78 E-value=50 Score=30.28 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=40.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHH-hCCCCCCHHHHHHHH-HHHHHcCChHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLEDAERIAM-AMPFEPDAAVWRALL-SFSAIHGKADM 389 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~-~m~~~p~~~~~~~ll-~~~~~~g~~~~ 389 (575)
|.....++.|...+.+. .-+.|+. .-|+.=+..+.+..+++.+..=-. ...+.||.+--..++ .+......+++
T Consensus 20 ~f~~k~y~~ai~~y~ra---I~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRA---ICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHH---HhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 33444556666544433 2445664 333444445555555555543222 224555544333333 33444555666
Q ss_pred HHHHHHHHHh
Q 008183 390 ASKMGKRLID 399 (575)
Q Consensus 390 a~~~~~~~~~ 399 (575)
|...+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666644
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.71 E-value=48 Score=24.48 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=22.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 008183 281 QGDQSTVLELFHLLEMRGFAPDE--YSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
..+-++|+..|+...+.-..|.. .++..++.+++..|++++...+
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555443222211 3455555566666655555443
No 372
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.16 E-value=1.8e+02 Score=26.12 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=35.5
Q ss_pred HHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 346 ISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
..++.+.+.++.|.+--.+. .+.|. ......=..+|.+...+++|+.-|+++.+.+|...
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 33455566666665544333 33342 22222223466677788889999999888888653
No 373
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.69 E-value=1.9e+02 Score=29.49 Aligned_cols=128 Identities=12% Similarity=0.054 Sum_probs=85.0
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHH
Q 008183 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVWRALLSFSAIHGKADMAS 391 (575)
Q Consensus 314 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~ 391 (575)
-..|++..|.+-+......+.-.|+.....+ ..+...|+++.+...+.... +.....+-..++......|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3457776665444444355555565443333 34567899999999887772 3445677888999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEE
Q 008183 392 KMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445 (575)
Q Consensus 392 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 445 (575)
.....|+..+-.++.....-...-...|-++++...++++..-+. ....-|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~--~~~~g~v 429 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP--ETQSGWV 429 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC--hhcccce
Confidence 999999976655555433333334456778889988888865433 2333465
No 374
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.57 E-value=1e+02 Score=23.27 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHH
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 288 (575)
+.++++...+.|+- +......+-.+-...|+.+.|.++++. ++ .....|..+++++-..|...-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~-L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKR-IV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHH-hc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34556666666632 222222222222356778888888888 77 77777788888877777765554
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.76 E-value=57 Score=29.03 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 368 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44555555555555555555555555555554444
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.60 E-value=34 Score=25.23 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=24.3
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHH
Q 008183 315 NAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERI 361 (575)
Q Consensus 315 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 361 (575)
+.+..++|...|.....+..-.|+ -.+...|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666655443222222 24455556666666666555543
No 377
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.43 E-value=2.2e+02 Score=27.40 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----------cCChHH
Q 008183 288 LELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR----------AGRLED 357 (575)
Q Consensus 288 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 357 (575)
.++|+.|.+.++.|.-..|..+.-.+++.=.+.....+|+.+.. |..-|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 46777788888888888888777777777778888888887742 22224444444432 366777
Q ss_pred HHHHHHhCC
Q 008183 358 AERIAMAMP 366 (575)
Q Consensus 358 A~~~~~~m~ 366 (575)
..++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777766654
No 378
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.52 E-value=71 Score=28.41 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=29.4
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 315 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
...+.+......+.........|+..+|..++..+...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444333344566666666666666777777776666665
No 379
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.43 E-value=24 Score=38.42 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=47.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 388 (575)
+|..+.+.|-.+-|+.+.+.=..+++ ....+|+++.|++.-.+.. |..+|..|.......|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF~-------------LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRFE-------------LALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhee-------------eehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 44445556666666665443222221 2345777777777766553 5667777777777777777
Q ss_pred HHHHHHHHHHhc
Q 008183 389 MASKMGKRLIDI 400 (575)
Q Consensus 389 ~a~~~~~~~~~~ 400 (575)
-|+..|++....
T Consensus 690 IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 690 IAEMCYQRTKNF 701 (1202)
T ss_pred HHHHHHHHhhhh
Confidence 777777776543
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=48.26 E-value=1.3e+02 Score=24.63 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=42.7
Q ss_pred HHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 184 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
+..+-++.+..-++.|++......+++|.+.+++..|.++++-+... ..+.-.+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34455666666788999999999999999999999999999877543 233333455443
No 381
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.05 E-value=2.7e+02 Score=26.98 Aligned_cols=83 Identities=13% Similarity=0.014 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcCC---CCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 008183 319 AGESEKWIERMKVRYKL---EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGK 395 (575)
Q Consensus 319 ~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 395 (575)
.+.|.+.|........- ..+......+.....+.|..++-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56777888877543111 334555566666777788877666666666546678888899999999999988889999
Q ss_pred HHHhcC
Q 008183 396 RLIDIN 401 (575)
Q Consensus 396 ~~~~~~ 401 (575)
.+...+
T Consensus 226 ~~l~~~ 231 (324)
T PF11838_consen 226 LLLSND 231 (324)
T ss_dssp HHHCTS
T ss_pred HHcCCc
Confidence 988843
No 382
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.18 E-value=2.2e+02 Score=26.17 Aligned_cols=120 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
+...+++++|.+.+-.--..++-..+ ++.++...|+.+.|+.+++.+.-..-.++..+....+ ...+.+.+|..+
T Consensus 88 ~LD~~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~---La~~~v~EAf~~ 162 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA---LANGLVTEAFSF 162 (226)
T ss_pred HhChHhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH---HHcCCHHHHHHH
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHH
Q 008183 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVW 374 (575)
Q Consensus 326 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 374 (575)
-+....+.+ ...+..++..+.....-....+.+-.+|+.+....|
T Consensus 163 ~R~~~~~~~----~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~~ 207 (226)
T PF13934_consen 163 QRSYPDELR----RRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQW 207 (226)
T ss_pred HHhCchhhh----HHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHHH
No 383
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.81 E-value=4.7e+02 Score=29.50 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
-|..|+.-|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488999999999999999999999865
No 384
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.37 E-value=41 Score=32.04 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=34.5
Q ss_pred CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 266 LNSI-AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 266 ~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
+|.. -||..|..-.+.|++++|+.++++.++.|+.--..||..-+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3443 36788999999999999999999999998876666665444
No 385
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.36 E-value=64 Score=33.69 Aligned_cols=111 Identities=8% Similarity=-0.027 Sum_probs=58.0
Q ss_pred HHHHHHHhcCCCCcchHHHHH--HHH-HhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 008183 153 NAKKVFDEIRERDVVCYGAMI--VGF-AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229 (575)
Q Consensus 153 ~A~~~f~~m~~~~~~~~~~li--~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 229 (575)
-|-.+|..|..++...|-+|= ..| .-.|+...|.+.+.........-..+....+.+...+.+..-.|..++.+.+.
T Consensus 591 ~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 591 IGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 355556666665555543331 112 23466667766666554322111223344444444555555555555555554
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC
Q 008183 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264 (575)
Q Consensus 230 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 264 (575)
.. ...+-++-.+.++|.-..+++.|++.|+++|.
T Consensus 671 ~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 671 IN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred hc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 43 33445555666666666667777776666554
No 386
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.09 E-value=83 Score=20.58 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=21.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777776666666665553
No 387
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.92 E-value=4.2e+02 Score=28.67 Aligned_cols=192 Identities=13% Similarity=0.128 Sum_probs=109.8
Q ss_pred CCChhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCC--ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCch---
Q 008183 61 SPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLP--NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKP--- 135 (575)
Q Consensus 61 ~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p--~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~--- 135 (575)
+.++..|..||.. |+..++...+... ..| +..+.-.+...+.....+++.|+..+...+...-.++.
T Consensus 27 ~~~l~~Y~kLI~~------ai~CL~~~~~~~~--l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 27 EEQLKQYYKLIAT------AIKCLEAVLKQFK--LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhhHHHHHHHHHH------HHHHHHHHhccCC--CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 4566678888765 5566666664331 333 34455556666664444899999999877554323222
Q ss_pred --hHHHHHHHHHHhCCChHHHHHHHHhcCCC----CcchHHH----H-HHHHHhCCCchHHHHHHHHhHHCC---CCcCH
Q 008183 136 --FCGSALVHFYSRFRSPDNAKKVFDEIRER----DVVCYGA----M-IVGFAQNSRLVDSLSVFADMRSSD---VGSTM 201 (575)
Q Consensus 136 --~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~----l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~ 201 (575)
.....++..|.+.+... |.+..++..+. ....|.- + +..+...+++..|++.++.....- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 12345677787777766 88888775431 1222322 2 222233479999999998886532 23444
Q ss_pred HHHHHHHHHHHhc--ccHHHHHHHHHHHHHhC---------CCCchhHHHHHHHHHH--ccCCHHHHHHHHhh
Q 008183 202 YCVSGALRAAAEL--AAMEQCRVIHGHAVVSG---------LDRNVIVGTGLIDGYG--KAGIVSDARRVFDE 261 (575)
Q Consensus 202 ~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~ 261 (575)
.++..++.+.... +..+.+.+....+.... ..|...++..+++.++ ..|+++.+...+++
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666665543 44455555555553321 1334566666666544 56676666555443
No 388
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.62 E-value=1.4e+02 Score=24.50 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcC--CCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 388 DMASKMGKRLIDIN--PYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 388 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
+.+..+|..|...+ ...+..|......+...|++++|.++++.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 37888888888644 55566788888899999999999888864
No 389
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.51 E-value=4.5e+02 Score=28.88 Aligned_cols=127 Identities=10% Similarity=0.003 Sum_probs=81.3
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh
Q 008183 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213 (575)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 213 (575)
-..++...|+.+.-.|++++|-...-.|...+..-|---+.-+...++......+ +.......+...|..+|..+..
T Consensus 391 i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 391 IKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 3467888999999999999999999999888888888888888887776554332 2222222344556666665554
Q ss_pred cccHHHHHHHHHHHHH------------hCC-------CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCCh
Q 008183 214 LAAMEQCRVIHGHAVV------------SGL-------DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS 268 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~------------~g~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 268 (575)
.+.. .+++...+ ... ..+......|+..|...+++++|...+-. +..+++
T Consensus 468 -~~~~---~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylk-lk~~~v 536 (846)
T KOG2066|consen 468 -SDVK---GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLK-LQDKDV 536 (846)
T ss_pred -HHHH---HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHh-ccChHH
Confidence 1111 11111111 001 11233445589999999999999999877 665544
No 390
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=45.42 E-value=2.5e+02 Score=25.92 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=80.6
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHH
Q 008183 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 219 (575)
..+..|++.-++.-|...++.+.+|=. +-.+++ -|.+..+..---++.+-.+.+++.-+......++ +...|+..+
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPIQ-SRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPIQ-SRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhHH-hhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHH
Confidence 345666677777777766666665421 112222 2334444333334444444555554444443333 334566655
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 299 (575)
|...++.-.. | -| +-.+..+|+- ...|.....-.|+..+ ..+++++|.+++.++-+.|.
T Consensus 211 alNnLQst~~-g-----------------~g-~Vn~enVfKv-~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 211 ALNNLQSTVN-G-----------------FG-LVNQENVFKV-CDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHHhc-c-----------------cc-ccchhhhhhc-cCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCC
Confidence 5544433221 1 11 1124455655 6677777777777654 45789999999999999998
Q ss_pred CCCHHHHHHHHHHH
Q 008183 300 APDEYSFLAVLTAL 313 (575)
Q Consensus 300 ~p~~~t~~~ll~a~ 313 (575)
.|.... +.+.+.+
T Consensus 270 sp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 270 SPEDII-TTLFRVV 282 (333)
T ss_pred CHHHHH-HHHHHHH
Confidence 876533 3444444
No 391
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.00 E-value=1.6e+02 Score=23.40 Aligned_cols=79 Identities=8% Similarity=-0.149 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
..++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|-.. +.|-.+++..-+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 46777777777766653 3333333444556788888888544444555788888776653 77877777777777755
Q ss_pred CC
Q 008183 195 SD 196 (575)
Q Consensus 195 ~g 196 (575)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.88 E-value=1e+02 Score=24.48 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=29.6
Q ss_pred ChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 150 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
++++.++.+.+ ..-|..|+.-|...|..++|++++.+...
T Consensus 28 ~~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKE-----HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHH-----cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444432 23588999999999999999999998866
No 393
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.85 E-value=2.3e+02 Score=25.31 Aligned_cols=113 Identities=11% Similarity=-0.004 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHH-----HHHHHhccCChHHH
Q 008183 286 TVLELFHLLEMRGFAPDEYSFLA--VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC-----LISAMGRAGRLEDA 358 (575)
Q Consensus 286 ~A~~l~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 358 (575)
+.....+.+....-....-++.. +...+...+++++|...++... . .|....+.. |.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l-~---~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL-A---QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-c---cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44444555554422222222222 2344567788888888877552 1 132333333 44556778899999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 359 ERIAMAMPFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 359 ~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
+..++... .++ ......-...+...|+-++|...|++.++.++.
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 98888764 232 112222335678889999999999998887743
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.83 E-value=25 Score=28.90 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=24.2
Q ss_pred hCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHH
Q 008183 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211 (575)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 211 (575)
..|.-..|..+|.+|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 446667799999999999999985 55555543
No 395
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.76 E-value=1.4e+02 Score=22.67 Aligned_cols=66 Identities=6% Similarity=0.020 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHH
Q 008183 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186 (575)
Q Consensus 119 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 186 (575)
+..+++.+.+.|+-. ..-.+.+-..-...|+.+.|+.+++.++ +..-.|...+.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~ilT-~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLT-EEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 345566666665321 1122222222225578888888888888 77788888888888877755553
No 396
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.72 E-value=2.7e+02 Score=26.15 Aligned_cols=182 Identities=12% Similarity=0.054 Sum_probs=107.6
Q ss_pred CCHHHHHHHHhhhCC-CC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHhcCC
Q 008183 250 GIVSDARRVFDENLS-VL-----NSIAWNAMMAGYAQQGDQSTVLELFHLLEMR---GF--APDEYSFLAVLTALCNAGL 318 (575)
Q Consensus 250 g~~~~A~~~~~~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~g~ 318 (575)
...++|+.-|++.++ ++ .-.+.-.||..+.+.|++++.++.|.+|... .+ .-+..+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456777777776333 11 2234445788888888888888888887532 12 2245667778777776666
Q ss_pred HHHHHHHHHHHHHhcC----CCCChhHHHHHHHHHhccCChHHHHHHHHhCC--C-----CC-------CHHHHHHHHHH
Q 008183 319 AGESEKWIERMKVRYK----LEPGLEHYTCLISAMGRAGRLEDAERIAMAMP--F-----EP-------DAAVWRALLSF 380 (575)
Q Consensus 319 ~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~-----~p-------~~~~~~~ll~~ 380 (575)
.+.-..+++.-..... -..-..+-+-|...|...|.+.+..+++.++. . .. -...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 6665555543322111 11112344556667777777777777776661 0 11 13456666777
Q ss_pred HHHcCChHHHHHHHHHHHhcC--CCCchhHHHHH-----HHHHhCCCchHHHH-HHHHHh
Q 008183 381 SAIHGKADMASKMGKRLIDIN--PYDDSAYVIVA-----NVLSGVGRWDEVAE-VRKVMK 432 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~-----~~~~~~g~~~~a~~-~~~~m~ 432 (575)
|...++-..-..++++.+... -+.|.. ...| .+..+.|+|++|.. .|+..+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 777888888888888887655 223322 1222 34557788888764 444444
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.20 E-value=2.9e+02 Score=26.29 Aligned_cols=136 Identities=8% Similarity=-0.015 Sum_probs=73.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCcCHHH-------HHHHHHHHHhcccHHHHHHHHH----HHHHhCCCCchhHHH
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC-------VSGALRAAAELAAMEQCRVIHG----HAVVSGLDRNVIVGT 240 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~ 240 (575)
+.+..++.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+... .|.+..-+..+.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34445667788888888888888877766544 3345555666665443332222 222222233344555
Q ss_pred HHHHHHHcc-CCHHHHHHHHhhhCC--CCChh------hHHHHHHHHHHcCChHHHHHHHH----HHHHcCCCCCHHHHH
Q 008183 241 GLIDGYGKA-GIVSDARRVFDENLS--VLNSI------AWNAMMAGYAQQGDQSTVLELFH----LLEMRGFAPDEYSFL 307 (575)
Q Consensus 241 ~li~~~~~~-g~~~~A~~~~~~~~~--~~~~~------~~~~li~~~~~~g~~~~A~~l~~----~m~~~g~~p~~~t~~ 307 (575)
+|++.+... ..++.-..+....++ .+.-. .-.-+|..+.+.|.+.+|+.+.. ++.+..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 566655443 234554444443221 11111 11236778889999999988654 444545566655543
No 398
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.49 E-value=5.6e+02 Score=29.38 Aligned_cols=132 Identities=16% Similarity=0.051 Sum_probs=68.6
Q ss_pred CCchhHHHHHHHHHHccCCHHH-HHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSD-ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
.++..+....+.++...+..+. +...+..++..+|...-.+.+.++.+.|....+...+..+.+ .+|...-...+.
T Consensus 753 D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~ 829 (897)
T PRK13800 753 DENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAAR 829 (897)
T ss_pred CCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHH
Confidence 4556666666666666655432 233344435566666666667777777766554444444433 235555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAA 372 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 372 (575)
++...+.. ++...+..+.. .|+..+-...+.++++.+....+...+...-..+|..
T Consensus 830 aL~~l~~~-~a~~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~ 885 (897)
T PRK13800 830 ALAGAAAD-VAVPALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDAD 885 (897)
T ss_pred HHHhcccc-chHHHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHH
Confidence 66666553 33343333322 4555555666666666433334444444432244443
No 399
>PRK11619 lytic murein transglycosylase; Provisional
Probab=42.80 E-value=4.8e+02 Score=28.46 Aligned_cols=93 Identities=4% Similarity=-0.191 Sum_probs=55.1
Q ss_pred HHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhCCCchH
Q 008183 347 SAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN---PYDDSAYVIVANVLSGVGRWDE 423 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~ 423 (575)
..+...|+..+|...+..+-...+......+.......|..+.+..........+ -.-+..|...+..+.+.-.++.
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~ 494 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQ 494 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCH
Confidence 3455667777777776665223455555555555667788888777665443211 1123356667777777667777
Q ss_pred HHHHHHHHhhCCCccC
Q 008183 424 VAEVRKVMKDRRVRKE 439 (575)
Q Consensus 424 a~~~~~~m~~~~~~~~ 439 (575)
+.-.--..++.++.|.
T Consensus 495 ~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 495 SYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 6644444456777654
No 400
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.27 E-value=2e+02 Score=23.95 Aligned_cols=48 Identities=6% Similarity=0.026 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHhcC-CCCch-hHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 386 KADMASKMGKRLIDIN-PYDDS-AYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~-p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+..++..+++.+.+.. |.... ....|.-++.+.|+++.+.++.+.+.+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3455556666666522 32222 223345556666666666666666554
No 401
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=42.21 E-value=9 Score=26.97 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.5
Q ss_pred ceEEeecCCccCcccCccccCC
Q 008183 551 REIVVRDVNRYHRFLNGSCTCG 572 (575)
Q Consensus 551 ~~~~~~d~~~~h~~~~g~~~c~ 572 (575)
+.|-+.|.+..|+|+||+-+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 5678899999999999986643
No 402
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.86 E-value=1.8e+02 Score=23.12 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=48.2
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 293 (575)
....++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.. ...||...|-+|-. .+.|-.+++...+.+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~-~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQC-HCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTT-S--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhccc-CCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 3456777777777777652 3334444445667778888888444444 55778887766544 467777777777777
Q ss_pred HHHcC
Q 008183 294 LEMRG 298 (575)
Q Consensus 294 m~~~g 298 (575)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 66554
No 403
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.65 E-value=39 Score=27.85 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=25.2
Q ss_pred HHHHHhcCchHHHHHHHHhhCCCCCcCCChhhHHHHHHHH
Q 008183 70 LISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTC 109 (575)
Q Consensus 70 li~~~~~~g~a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~ 109 (575)
.+++|....+|-.+|+.|...| .+||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G---~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERG---NPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCC---CCCcc--HHHHHHHh
Confidence 4555655555999999999998 78874 66666654
No 404
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.94 E-value=43 Score=33.99 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=56.6
Q ss_pred HHHhccCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEPDAAVW-RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 424 (575)
.-+.+.+.++.|..++.+. .+.||-..| ..=..++.+.+++..|..=+.++++.+|.....|..-..++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445566777777777665 566653333 22236667777777777777777777777666676666677777777777
Q ss_pred HHHHHHHh
Q 008183 425 AEVRKVMK 432 (575)
Q Consensus 425 ~~~~~~m~ 432 (575)
...|+...
T Consensus 92 ~~~l~~~~ 99 (476)
T KOG0376|consen 92 LLDLEKVK 99 (476)
T ss_pred HHHHHHhh
Confidence 77666543
No 405
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.68 E-value=1.7e+02 Score=29.49 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=37.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC-----------CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS-----------VLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
..-.|+..++-.|++..|+++++. +. .-.+.++.-+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777788888888888776 44 1233455566667777777777777776553
No 406
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.60 E-value=2.2e+02 Score=25.94 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcC--CCC----chhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 388 DMASKMGKRLIDIN--PYD----DSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 388 ~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
..|.+.|.+..+.+ |.. ......++.++.+.|+.++|.+.|.++...+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44555555555433 221 2355677888899999999999999887643
No 407
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=40.14 E-value=3.8e+02 Score=27.18 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=76.1
Q ss_pred HHHHHHHHhHcCCChHHHH-----HHHc---cCCCCChhhHHH---HHHHHhcC-----chHHHHHHHHhhCC-------
Q 008183 35 IYNNLITNYSKSNLLSYSL-----RLFN---HIPSPNIVSWTA---LISAHSNS-----PLSLNIFLSMLRHP------- 91 (575)
Q Consensus 35 ~~~~li~~~~~~g~~~~A~-----~~f~---~m~~~~~~~~~~---li~~~~~~-----g~a~~~~~~m~~~~------- 91 (575)
-..+.|..|||..+++.-- .++. .+.-|-...||. +..-|.-. |+...+|+.+.+..
T Consensus 94 dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~ 173 (669)
T KOG3636|consen 94 DLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNH 173 (669)
T ss_pred hhhhHhhhhhhccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhh
Confidence 4677889999987765321 1111 112344444443 33333322 33556666554432
Q ss_pred --CCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHH---HH-----HHhCCChHHHHHHHHhc
Q 008183 92 --TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV---HF-----YSRFRSPDNAKKVFDEI 161 (575)
Q Consensus 92 --~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li---~~-----~~~~g~~~~A~~~f~~m 161 (575)
.+.+.||..+.+.+-..++..- ..+....+++.-++.+- |=.+-+-+|| ++ -.+...-+++.++++.|
T Consensus 174 LdtkkitPd~Y~lnWf~sLFas~~-Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenm 251 (669)
T KOG3636|consen 174 LDTKKITPDMYTLNWFASLFASSM-STEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENM 251 (669)
T ss_pred hhccccCchHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcC
Confidence 1247788888777777666666 67777777777777652 2222222222 11 12334556777777777
Q ss_pred CC----CCcchHHHHHHHHH
Q 008183 162 RE----RDVVCYGAMIVGFA 177 (575)
Q Consensus 162 ~~----~~~~~~~~li~~~~ 177 (575)
+. .|+.-+-+|..-|+
T Consensus 252 p~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 252 PAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred chhcccccchhHHHHHHHHh
Confidence 65 25555555655554
No 408
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.04 E-value=3.6e+02 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=19.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS 264 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~ 264 (575)
...|+.-|.+.+++++|..++.. |.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~s-mn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLS-MN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHh-CC
Confidence 34577788888888888888887 55
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.91 E-value=3.3e+02 Score=25.67 Aligned_cols=158 Identities=11% Similarity=0.061 Sum_probs=76.5
Q ss_pred hCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHH----HhHHCCCCcCHHHHHHHHHHHHhccc-----H
Q 008183 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFA----DMRSSDVGSTMYCVSGALRAAAELAA-----M 217 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~~ll~~~~~~~~-----~ 217 (575)
+.+++++|.+++..- ...+.+.|+...|-++-. -..+.+.++|......++........ .
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456667776665431 223445555554443332 23334566666555555555443321 1
Q ss_pred HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 218 EQCRVIHGHAVVSGL--DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
+-..+....- +.|- .-|+.....+...|.+.|++.+|+.-|-. -..++...+-.++.-....|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~-~~~~~~~~~~~ll~~~~~~~~~~e~-------- 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL-GTDPSAFAYVMLLEEWSTKGYPSEA-------- 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT-S-HHHHHHHHHHHHHHHHHTSS--H--------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh-cCChhHHHHHHHHHHHHHhcCCcch--------
Confidence 1222222222 2222 23677888899999999999999998865 3333333332233333333333332
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008183 296 MRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332 (575)
Q Consensus 296 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 332 (575)
|...-..++ -|...+++..|...+....++
T Consensus 141 ------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ------DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222222333 345567888888877777544
No 410
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.61 E-value=1.7e+02 Score=27.07 Aligned_cols=56 Identities=11% Similarity=-0.035 Sum_probs=44.8
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+...|++-++++-..+++...|.|..+|..-..+.+..=+..+|..-|....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 44456788888999999999999999988888888877777777888877777653
No 411
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.89 E-value=50 Score=23.06 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
.-.+|.||.+.|++++|.+..+++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567788888888888887777654
No 412
>PRK10941 hypothetical protein; Provisional
Probab=38.79 E-value=1.5e+02 Score=28.17 Aligned_cols=66 Identities=20% Similarity=0.132 Sum_probs=49.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 342 YTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
.+.+-..|.+.++++.|..+.+.+ .+.|+ +.-+.--.-.|.+.|.+..|..-++..++.-|.++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 345566778888888888888877 45554 5555555566788888999988888888888877754
No 413
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.23 E-value=1.9e+02 Score=23.53 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCCCCchhHHH----HHHHHHhCCCchHHHHHHHH
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLI-------DINPYDDSAYVI----VANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~----l~~~~~~~g~~~~a~~~~~~ 430 (575)
...+..|-.++...|++++++.-.+..+ +++.+....|.. -..++...|+.++|.+-|+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4445555556666666655544333332 344444444443 23456778888888888764
No 414
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.19 E-value=1.1e+02 Score=19.92 Aligned_cols=31 Identities=3% Similarity=0.101 Sum_probs=15.3
Q ss_pred hCCCchHHHHHHHHhHHCCCCcCHHHHHHHH
Q 008183 178 QNSRLVDSLSVFADMRSSDVGSTMYCVSGAL 208 (575)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 208 (575)
+.|-..++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444455555555555555554444444433
No 415
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.08 E-value=1.7e+02 Score=31.28 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=39.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHhcCCCCChhHHHH
Q 008183 273 AMMAGYAQQGDQSTVLELFHLLEMR--GFAPDEYSFLAVLTALCNAGLAG------ESEKWIERMKVRYKLEPGLEHYTC 344 (575)
Q Consensus 273 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~------~a~~~~~~m~~~~~~~p~~~~~~~ 344 (575)
+|+.+|..+|++-.+.++++..... |-+.=...+|..|+...+.|.++ .+.+.+++. .+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 5677777777777777777766543 22222344555566666666543 233333222 34455566666
Q ss_pred HHHH
Q 008183 345 LISA 348 (575)
Q Consensus 345 li~~ 348 (575)
|+.+
T Consensus 109 l~~~ 112 (1117)
T COG5108 109 LCQA 112 (1117)
T ss_pred HHHh
Confidence 5554
No 416
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.93 E-value=1.3e+02 Score=22.55 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHH
Q 008183 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDS 185 (575)
Q Consensus 121 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 185 (575)
.+++.+++.|+ .+....-...+...+.+.|.++++.++.+...+|.+...++-..|...-|
T Consensus 20 ~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 45566665553 22222333344556778888888888888888888888888777765444
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.44 E-value=1.8e+02 Score=30.68 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCCCChhHHHHH--HHHHh-ccCChHHHHHHHHhC-CCCC--C
Q 008183 299 FAPDEYSFLAVLTALCN--AGLAGESEKWIERMKVRYKLEPGLEHYTCL--ISAMG-RAGRLEDAERIAMAM-PFEP--D 370 (575)
Q Consensus 299 ~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l--i~~~~-~~g~~~~A~~~~~~m-~~~p--~ 370 (575)
--|+..|..+++.-... ....+-|..++..|. .|+...|.+| ...|- -.|+...|...+... ...| .
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-----~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~ 641 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-----KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQ 641 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-----CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhh
Confidence 34666666666544433 223445556665552 2333233222 22333 357777777766554 2233 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
-+....|.....+.|....|-.++.+.+.+....+-++..+.++|....+++.|.+.|++..+.
T Consensus 642 ~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 642 DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 2334455566666677777877877777777666677788888888888888888887766544
No 418
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.16 E-value=4.6e+02 Score=27.59 Aligned_cols=25 Identities=8% Similarity=0.311 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhH
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMR 193 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~ 193 (575)
-..++.-|.+.+++++|+.++..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3346666777777777777777763
No 419
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=37.10 E-value=1.6e+02 Score=24.74 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=42.4
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 008183 355 LEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419 (575)
Q Consensus 355 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 419 (575)
-+.|.++.+-|| . ....-.........|++.-|.++.+.++..+|+|..+-....++|...|
T Consensus 57 ~~~A~~~v~l~G-G--~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 57 EEEAKRYVELAG-G--ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHTT-C--HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 456777777775 2 2233334555677899999999999999999999887777777665544
No 420
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.35 E-value=1.8e+02 Score=21.79 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHH
Q 008183 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTV 287 (575)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 287 (575)
.++..+.+.|+- +..-.-...+..-+.+.|.++++. ++.+...+|.++..++-..|...-|
T Consensus 20 ~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~-L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLID-LETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCchHHH
Confidence 355555555522 222222223344567777777777 7777777777777777776655444
No 421
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.69 E-value=4.1e+02 Score=25.53 Aligned_cols=54 Identities=6% Similarity=0.148 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 139 SALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 139 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
-.++..+.+..++......+..+. .+..-...+..+...|++..|+++..+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566666666666666666553 344455667778899999999999988765
No 422
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=35.55 E-value=5e+02 Score=26.52 Aligned_cols=306 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhcCchHHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHh
Q 008183 68 TALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR 147 (575)
Q Consensus 68 ~~li~~~~~~g~a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 147 (575)
|-++..|+..|++.+.++-.++ ...+.+.-..+=+++...+ .-..+.-+.-.+.+.+...+....+.+..++.+
T Consensus 218 n~~l~eyv~~getrea~rciR~-----L~vsffhhe~vkralv~am-e~~~ae~l~l~llke~~e~glissSq~~kGfsr 291 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRE-----LGVSFFHHEGVKRALVDAM-EDALAEGLTLKLLKEGREEGLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHH-----hCCCchhhHHHHHHHHHHH-hhhhcccceeccchhhhhhcchhhhccccCchh
Q ss_pred CC--------ChHHHHHHHHhcCCCCcch---------------------------HHHHHHHHHhCCCchHHHHHHHHh
Q 008183 148 FR--------SPDNAKKVFDEIRERDVVC---------------------------YGAMIVGFAQNSRLVDSLSVFADM 192 (575)
Q Consensus 148 ~g--------~~~~A~~~f~~m~~~~~~~---------------------------~~~li~~~~~~g~~~~A~~~~~~m 192 (575)
.+ ++..|...|+.+..+++.- -..+|+-|...|+..+..+.++++
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHc
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHH-------------HHHHHH
Q 008183 193 RSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS-------------DARRVF 259 (575)
Q Consensus 193 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-------------~A~~~~ 259 (575)
-.....|-..-+..-+..=.+...-+.|-.++..+.-. +-++..+-+.++-.+-...+.. -|+.+.
T Consensus 372 n~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAVi 450 (645)
T KOG0403|consen 372 NLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVI 450 (645)
T ss_pred CCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHh
Q ss_pred hhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh
Q 008183 260 DENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339 (575)
Q Consensus 260 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 339 (575)
+..+.+.+...+..-+..-.+....-+.-..+-.|...|-+ +++.+..-|--......-+++
T Consensus 451 DdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeR--------llr~WGgGG~g~sVed~kdkI---------- 512 (645)
T KOG0403|consen 451 DDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGER--------LLRVWGGGGGGWSVEDAKDKI---------- 512 (645)
T ss_pred hcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccc--------hhheecCCCCcchHHHHHHHH----------
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
..|+.-|...|++.||.+.++++ |+-...+.+.+++.+.-+.|+-.....+++.....+
T Consensus 513 ---~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 ---DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred ---HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
No 423
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.19 E-value=27 Score=35.33 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=64.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHH-HHHHHhccCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCC
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTC-LISAMGRAGRLEDAERIAMA-MPFEPD-AAVWRALLSFSAIHGK 386 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~~~~~~g~ 386 (575)
+......+.++.|..++.+.+ .+.|+-..|-+ =..++.+.+++..|..=+.+ +...|+ ...|.-=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 444556788999999998775 45787544433 33778888888888754444 355664 3334333455566677
Q ss_pred hHHHHHHHHHHHhcCCCCchh
Q 008183 387 ADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 387 ~~~a~~~~~~~~~~~p~~~~~ 407 (575)
+.+|...++......|.++.+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 888888888888888987643
No 424
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.15 E-value=4.8e+02 Score=26.26 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCC------CCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRE------RDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
...-+-+.|..||+++.|.+.+.+..+ ..+..|-.+|..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456778889999999999999988554 1334566666666677888887777777655
No 425
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.17 E-value=56 Score=22.80 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=20.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
|-.-.-.+|.+|.+.|++++|.++..++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344578888888888888888877754
No 426
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.02 E-value=5.2e+02 Score=26.31 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=55.3
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
.++..+...-+.++++.+..+..- .+..++...|...-..-+.+....|. .+|...+...... |+..+...+...
T Consensus 158 d~d~~Vra~A~raLG~l~~~~a~~-~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~ 232 (410)
T TIGR02270 158 HEDALVRAAALRALGELPRRLSES-TLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVL 232 (410)
T ss_pred CCCHHHHHHHHHHHHhhccccchH-HHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHH
Confidence 344444455555555555432222 22232444555544555555555555 4454444442221 122222222222
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCC
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMP 366 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (575)
....|. +++...+..+..+ ++ +-...+.++++.|+..-+.-+.+.|.
T Consensus 233 lal~~~-~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 233 LAVAGG-PDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHhCCc-hhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 222222 2455544444222 22 44456666677777776666666664
No 427
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.20 E-value=1.1e+02 Score=24.28 Aligned_cols=21 Identities=0% Similarity=0.349 Sum_probs=11.0
Q ss_pred HHHHHHhCCCchHHHHHHHHh
Q 008183 172 MIVGFAQNSRLVDSLSVFADM 192 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m 192 (575)
++..|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666665555554
No 428
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=33.07 E-value=4.4e+02 Score=25.19 Aligned_cols=121 Identities=10% Similarity=0.152 Sum_probs=80.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHH-CCCCcCHHHHHHHHHHHHh-cc-cHHHHHHHHHHHHHh-CCCCchhHHHHHHH
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRS-SDVGSTMYCVSGALRAAAE-LA-AMEQCRVIHGHAVVS-GLDRNVIVGTGLID 244 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li~ 244 (575)
|..|+. ++....+|+++|+.... ..+--|..+...+++.... .+ .+..--++.+.+... |-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 665654 34556778888874322 3466677777777777765 22 222223344444432 34677778888899
Q ss_pred HHHccCCHHHHHHHHhhhCC----CCChhhHHHHHHHHHHcCChHHHHHHHH
Q 008183 245 GYGKAGIVSDARRVFDENLS----VLNSIAWNAMMAGYAQQGDQSTVLELFH 292 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~ 292 (575)
.+++.+++.+-.++++...+ ..|...|..+|..-...|+..-..++..
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 99999999999988887333 4577889999999999998766655544
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.21 E-value=2.8e+02 Score=22.65 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCCc-hhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 219 QCRVIHGHAVVSGLDRN-VIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 219 ~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
.+.++|..|...|+... ...|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66677777777665444 45566667777777777777777764
No 430
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.08 E-value=5.8e+02 Score=26.24 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhCCCccCCc--eeEEEECCEEEEEEeCCCCCcchHHH---HHHHHHHHHHHHHcCCccCCCccc---ccc
Q 008183 423 EVAEVRKVMKDRRVRKEGG--RSWIEVKGKVHVFLAGDRMHERTEDI---YTKLAELMEECERLGYVPVWDEML---HNV 494 (575)
Q Consensus 423 ~a~~~~~~m~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~m~~~g~~p~~~~~~---~~~ 494 (575)
++..+++.+...|+.-..+ +||+ .-|...-..++. ++..+++.....+.|+..|...+- ..+
T Consensus 152 DarlL~e~~~a~G~~a~EGG~ISYn----------lPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL 221 (480)
T TIGR01503 152 DARLLAEIILAGGFTSFEGGGISYN----------IPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL 221 (480)
T ss_pred cHHHHHHHHHHcCCCccCCCcceec----------cccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc
Confidence 5677777777778764432 3443 233332233333 445557777777888887765432 222
Q ss_pred ChHHhhhhHHHHHHHHHHHHhhhcCCCCCCcEEEEccccccCCcch-----------hhHhhhhhcCceEEeecCCccCc
Q 008183 495 GDREKREALWYHSEKLALAFGLVSGAPRGKTLRIVKNLRICRDCHE-----------SFKYISRVVEREIVVRDVNRYHR 563 (575)
Q Consensus 495 ~~~~~~~~~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------a~~~~~~~~~~~~~~~d~~~~h~ 563 (575)
-...-.-.+..---.++...|+. ++.=-|.-||+... +.+++.++.-.|+.|. ..||-
T Consensus 222 vPPsisiav~ilE~Lla~eqGVk---------sisvgy~Q~Gn~~QDiaai~aL~~l~~eYl~~~g~~Dv~i~--tV~hq 290 (480)
T TIGR01503 222 VPPSISNAIGIIEGLLAAEQGVK---------NITVGYGQVGNLTQDIAALRALEEQTNEYLKAYGYNDVFVT--TVFHQ 290 (480)
T ss_pred cChHHHHHHHHHHHHHHHHcCCe---------EEEeccccCCChHHHHHHHHHHHHHHHHHHHhCCCCceEEE--EEeee
Confidence 22112222233333455555654 22334778887762 3334444444566655 55665
Q ss_pred cc
Q 008183 564 FL 565 (575)
Q Consensus 564 ~~ 565 (575)
+=
T Consensus 291 wM 292 (480)
T TIGR01503 291 WM 292 (480)
T ss_pred cc
Confidence 53
No 431
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.61 E-value=2.4e+02 Score=30.19 Aligned_cols=47 Identities=17% Similarity=0.013 Sum_probs=26.3
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHhhCC--CCchhHHHHHHHHHHhCCCh
Q 008183 104 SLFKTCASLSHAFLFGLSLHSLSLKLSL--HDKPFCGSALVHFYSRFRSP 151 (575)
Q Consensus 104 ~ll~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~ 151 (575)
+++.+|...| ++..+.+++...+...- ..-...+|..|+-..+.|.+
T Consensus 33 sl~eacv~n~-~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNG-DFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 6677777777 77777777666655431 11123345555555555544
No 432
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=31.39 E-value=6.6e+02 Score=26.67 Aligned_cols=184 Identities=9% Similarity=-0.089 Sum_probs=95.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+..+|+.-+.--...|+.+.+.-+|++..-.- .-=...|--.+.-....|+.+.+..++....+.-.+ +...-..+=.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence 45678888888888888888888888874321 111123333333344447777777776666554322 2222222222
Q ss_pred HH-HccCCHHHHHHHHhhhCCC-CChh-hHHHHHHHHHHcCChHHHH---HHHHHHHHcCCCCCHHHHHHHHHH-----H
Q 008183 245 GY-GKAGIVSDARRVFDENLSV-LNSI-AWNAMMAGYAQQGDQSTVL---ELFHLLEMRGFAPDEYSFLAVLTA-----L 313 (575)
Q Consensus 245 ~~-~~~g~~~~A~~~~~~~~~~-~~~~-~~~~li~~~~~~g~~~~A~---~l~~~m~~~g~~p~~~t~~~ll~a-----~ 313 (575)
.+ -..|+++.|..+++....+ |+.+ .-.--+.-..+.|+.+.+. +++.........+. ++..+.-- +
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~--i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG--ILEKLYVKFARLRY 451 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc--hhHHHHHHHHHHHH
Confidence 22 2346888888888773332 2221 1111223345566666666 23222222111111 11111111 2
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC
Q 008183 314 CNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR 354 (575)
Q Consensus 314 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 354 (575)
.-.++.+.|..++.++. . -++++...|..+++.....+.
T Consensus 452 ~i~~d~~~a~~~l~~~~-~-~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 452 KIREDADLARIILLEAN-D-ILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcCHHHHHHHHHHhh-h-cCCccHHHHHHHHHHHHhCCc
Confidence 23577888888888773 2 344557777777776665543
No 433
>PRK12356 glutaminase; Reviewed
Probab=31.36 E-value=3.8e+02 Score=26.10 Aligned_cols=84 Identities=7% Similarity=-0.022 Sum_probs=44.2
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCc-C-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC-------chhHHHHHHHHH
Q 008183 176 FAQNSRLVDSLSVFADMRSSDVGS-T-MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDR-------NVIVGTGLIDGY 246 (575)
Q Consensus 176 ~~~~g~~~~A~~~~~~m~~~g~~p-~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-------~~~~~~~li~~~ 246 (575)
-...|+-..|+..| |+..|.-+ | ..+.....+.|+-....+..-.+-..+...|+.| +..+...+....
T Consensus 164 E~~t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~s~M 241 (319)
T PRK12356 164 EQTTNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLTGKRVVDADNVPYILAEM 241 (319)
T ss_pred HHhhhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHH
Confidence 33444445554443 45555443 2 2233444444444444444444444455556555 334555666677
Q ss_pred HccCCHHHHHHHHhh
Q 008183 247 GKAGIVSDARRVFDE 261 (575)
Q Consensus 247 ~~~g~~~~A~~~~~~ 261 (575)
..||.+|.+-++.-+
T Consensus 242 ~TCGmYd~SG~fa~~ 256 (319)
T PRK12356 242 TMEGLYERSGDWAYT 256 (319)
T ss_pred HHcCCccchhhHHHH
Confidence 778888877766554
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.48 E-value=3.3e+02 Score=24.07 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=18.7
Q ss_pred HHHHHHccCCHHHHHHHHhhhCCCCChhhH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLSVLNSIAW 271 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 271 (575)
.+-.|.+.|.+++|.++++..+..++....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhH
Confidence 445677777777777777775555544433
No 435
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.33 E-value=2.8e+02 Score=24.54 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHHhccCChHHHHHHHHhCCCCCCHHHHH
Q 008183 346 ISAMGRAGRLEDAERIAMAMPFEPDAAVWR 375 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 375 (575)
+-.|.+.|.+++|.+++++.--.|+.....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r 147 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLR 147 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHH
Confidence 345677777777777777762255444433
No 436
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.02 E-value=7.1e+02 Score=26.63 Aligned_cols=99 Identities=8% Similarity=0.052 Sum_probs=57.3
Q ss_pred cccHHHHHHHHhHcCCChHHHHHHHccCCCCC-hhhHHHHHHHHhcCch--HHHHHHHHhhCCCCCcCCChhhHHHHHHH
Q 008183 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPN-IVSWTALISAHSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKT 108 (575)
Q Consensus 32 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~ll~~ 108 (575)
.+..++.|++.+... +.++-.+++.++.. . ...|..++++....|. |+.+..++...+ ..++...-..+..+
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~---~~~~~ea~~~~~~~ 383 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK---KITPLEAAQLLAVL 383 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC---CCCHHHHHHHHHHH
Confidence 445667777665543 55666666666544 3 5778888888888888 888877777766 33333322223332
Q ss_pred Hh--hchhhHHHHHHHHHHHHhhCCCCchh
Q 008183 109 CA--SLSHAFLFGLSLHSLSLKLSLHDKPF 136 (575)
Q Consensus 109 ~~--~~~~~~~~a~~~~~~~~~~g~~~~~~ 136 (575)
.. ... ..+....+++.+......+...
T Consensus 384 ~~~~~~P-t~~~l~~l~~l~~~~~~~~~~~ 412 (574)
T smart00638 384 PHTARYP-TEEILKALFELAESPEVQKQPY 412 (574)
T ss_pred HHhhhcC-CHHHHHHHHHHhcCccccccHH
Confidence 22 233 4555555555554444455543
No 437
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.91 E-value=3.1e+02 Score=23.12 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=15.2
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 293 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
.+.+.|++++..-. .++..+.+.+..-.|.++++.+
T Consensus 11 ~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l 46 (145)
T COG0735 11 RLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEEL 46 (145)
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHH
Confidence 33444444333222 2333334444445555555555
No 438
>PRK09169 hypothetical protein; Validated
Probab=29.72 E-value=1.3e+03 Score=29.45 Aligned_cols=399 Identities=12% Similarity=0.041 Sum_probs=221.0
Q ss_pred cccHHHHHHHHhHcCCChHHHHHHHccCC-----C------CChhhHHHHHHHHhcCch-------HHHHHHHHhhCCCC
Q 008183 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIP-----S------PNIVSWTALISAHSNSPL-------SLNIFLSMLRHPTL 93 (575)
Q Consensus 32 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~-----~------~~~~~~~~li~~~~~~g~-------a~~~~~~m~~~~~~ 93 (575)
+..-...++++++|--+-...+..-..+- + -+......++.++++..+ +..+-..+......
T Consensus 203 ~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~l 282 (2316)
T PRK09169 203 DAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGL 282 (2316)
T ss_pred chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhh
Confidence 33344555666666655544444333331 1 234456778888888765 33443433332211
Q ss_pred CcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHh-------hCCCCchhHHHHHHHHHHhCCChHHHHHHH----HhcC
Q 008183 94 SFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLK-------LSLHDKPFCGSALVHFYSRFRSPDNAKKVF----DEIR 162 (575)
Q Consensus 94 ~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~g~~~~A~~~f----~~m~ 162 (575)
...-|..-+...+.++++.. +-+.+.+.-..+.. ..-..+..-....+++++|..+-+.+.... +.+.
T Consensus 283 r~~~~~Q~vAN~LNALSKwp-~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~ 361 (2316)
T PRK09169 283 RLALDPQGVANALNALSKWP-DTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLA 361 (2316)
T ss_pred hhhcCHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 12357778889999999987 54433322222211 112345555667788999988776543332 2222
Q ss_pred C-------CCcchHHHHHHHHHhCCCchH----HHHHHHHhHHC-C--CCcCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 008183 163 E-------RDVVCYGAMIVGFAQNSRLVD----SLSVFADMRSS-D--VGSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228 (575)
Q Consensus 163 ~-------~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 228 (575)
. -|.--....+.++++-++-+. |..+..++... + -..|.--....+++|++.+.-+.+.+....+.
T Consensus 362 ~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA 441 (2316)
T PRK09169 362 RDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALA 441 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 1 144556678888888776542 33444444332 1 13566778889999998876554433322221
Q ss_pred ---Hh----CCCCchhHHHHHHHHHHccCCHHH----HHHHHhhhCC------CCChhhHHHHHHHHHHcCChHHHHH--
Q 008183 229 ---VS----GLDRNVIVGTGLIDGYGKAGIVSD----ARRVFDENLS------VLNSIAWNAMMAGYAQQGDQSTVLE-- 289 (575)
Q Consensus 229 ---~~----g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~-- 289 (575)
.. .-..+..-....+++++|-++-+. +..+...... .-+..-....+.++++-++.+....
T Consensus 442 ~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA 521 (2316)
T PRK09169 442 ARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAA 521 (2316)
T ss_pred HHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHH
Confidence 11 123456677778889998876542 3333333111 2345567778889998887665433
Q ss_pred --HHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHhcC--CCCChhHHHHHHHHHhccCChHH-
Q 008183 290 --LFHLLEMR---GFAPDEYSFLAVLTALCNAGLAGESE----KWIERMKVRYK--LEPGLEHYTCLISAMGRAGRLED- 357 (575)
Q Consensus 290 --l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~----~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~- 357 (575)
+...+... --.-|..-+...+.++++-.+.+.+. .+...+..+.+ -..+.......+.+++|-+.-..
T Consensus 522 ~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ac 601 (2316)
T PRK09169 522 EALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDAC 601 (2316)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhH
Confidence 33322221 12346677888999999877643333 23333311111 12345666777888888775432
Q ss_pred ---HHHHHHhC----C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--------cCCCCchhHHHHHHHHHhCCC
Q 008183 358 ---AERIAMAM----P--FEPDAAVWRALLSFSAIHGKADMASKMGKRLID--------INPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 358 ---A~~~~~~m----~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~ 420 (575)
|..+.... + -.-|..-+..++.++.+..+.+........+.. ..-.++.-...+++++++-.+
T Consensus 602 r~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~ 681 (2316)
T PRK09169 602 RAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPD 681 (2316)
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCC
Confidence 22333333 2 123677788899999998877765544433332 111234445567788888877
Q ss_pred chHHHHHHHHH
Q 008183 421 WDEVAEVRKVM 431 (575)
Q Consensus 421 ~~~a~~~~~~m 431 (575)
.+.+......+
T Consensus 682 ~~~c~~Aa~aL 692 (2316)
T PRK09169 682 EAACRAAALAL 692 (2316)
T ss_pred cHHHHHHHHHH
Confidence 66544444433
No 439
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.61 E-value=2.3e+02 Score=24.55 Aligned_cols=61 Identities=8% Similarity=-0.035 Sum_probs=35.7
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH
Q 008183 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356 (575)
Q Consensus 294 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 356 (575)
+...|++++..-. .++..+......-.|.++++.+ .+.+...+..|.-.-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L-~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLL-REAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHH-HhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4555766655444 3444444445566778888877 44455555544444556777777664
No 440
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=29.59 E-value=4.1e+02 Score=23.71 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=44.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC--------------CCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSGL--------------DRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
.+++-.|.+..++.+++++++.+.+..+ .+--.+.|.....+.++|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4567778888899999999988866532 23346777888888888888888888876
No 441
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.03 E-value=1e+02 Score=28.16 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=29.1
Q ss_pred hccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 350 GRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
.+.|+.+.|.+++.+. .+.| ....|-.+...-.+.|+.+.|.+.+++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555555444 3333 24555555555555566666666666665555543
No 442
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=28.96 E-value=5.2e+02 Score=24.73 Aligned_cols=64 Identities=11% Similarity=0.055 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 008183 300 APDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 300 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
.++..+...+|..++..+++..-.+++.......+...|...|..+|......|+..-..++++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3444444444444444445444444444332211222334444444444444444444444443
No 443
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.47 E-value=2.6e+02 Score=21.12 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=41.1
Q ss_pred CChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 008183 97 PNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR 162 (575)
Q Consensus 97 p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 162 (575)
|....|...++.-.... . ++ .++++.....|+..|+.+|..+++...-+=..+....++..|.
T Consensus 8 ~~~~~~k~~~~rk~~Ls-~-eE-~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLS-A-EE-VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHhccC-H-HH-HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34445555554443333 1 22 2788888888888888888888887766666666677777664
No 444
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.30 E-value=3.9e+02 Score=27.05 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCC-----------CCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 008183 139 SALVHFYSRFRSPDNAKKVFDEIRE-----------RDVVCYGAMIVGFAQNSRLVDSLSVFADMR 193 (575)
Q Consensus 139 ~~li~~~~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 193 (575)
-.|+..++--||+..|+++++.+.- -.+.+|.-+--+|.-.+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888776532 133445556666777777777777777653
No 445
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.05 E-value=4.9e+02 Score=24.17 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=25.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008183 275 MAGYAQQGDQSTVLELFHLLEM----RG-FAPDEYSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 275 i~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
..-|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+-
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3445555555555555555421 22 2233344445555555666666555543
No 446
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=27.92 E-value=4.7e+02 Score=23.91 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcc-hHHHHHHH--HHhCCCchHHHHHHHHhHH
Q 008183 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRERDVV-CYGAMIVG--FAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 135 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~ 194 (575)
+.++|-|--.+...|+++.|.+.|+..-+-|+. -|..+=++ +--.|++.-|.+-|...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 456666666666777777777777776654332 22222221 2234666666665555543
No 447
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=27.86 E-value=4.3e+02 Score=23.34 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=6.7
Q ss_pred CCCCHHHHHHHHHHH
Q 008183 367 FEPDAAVWRALLSFS 381 (575)
Q Consensus 367 ~~p~~~~~~~ll~~~ 381 (575)
.+|+..+|+.-+...
T Consensus 109 ~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 109 EDPNNELYRKSLEMA 123 (186)
T ss_dssp H-TT-HHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHH
Confidence 355555555555444
No 448
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.80 E-value=2.7e+02 Score=21.05 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 289 ELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 289 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
++|+-....|+..|...|..++....-.=..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667766777777666665555555555666665543
No 449
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=27.47 E-value=2.1e+02 Score=21.12 Aligned_cols=13 Identities=8% Similarity=0.031 Sum_probs=5.3
Q ss_pred hCCChHHHHHHHH
Q 008183 147 RFRSPDNAKKVFD 159 (575)
Q Consensus 147 ~~g~~~~A~~~f~ 159 (575)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344444444443
No 450
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.40 E-value=5e+02 Score=25.29 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=36.2
Q ss_pred HHHHHHhccCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCC
Q 008183 344 CLISAMGRAGRLEDAERIAMAM-PFEPD---AAVWRALLSFSAIHGKADMASKMGKRLIDIN-PYD 404 (575)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~ 404 (575)
.|...-.+.|++.+|.+.|+.+ +..|- ......||.+|....-+.+...++.+.-++. |.+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkS 345 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKS 345 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcch
Confidence 3444445678888888888776 22332 2234556777776666666666665555544 443
No 451
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.34 E-value=4.6e+02 Score=23.52 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=45.3
Q ss_pred HHHhcccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhH--HHHHHHHHHcCChH
Q 008183 210 AAAELAAMEQCRVIHGHAVVSGLDRN--VIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW--NAMMAGYAQQGDQS 285 (575)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~ 285 (575)
.+...+++++|..-+.......-..+ ..+--.|.......|.+|+|.++++. ...++-..- ..-...+...|+-+
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t-~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT-IKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cccccHHHHHHHHhhhHHHHcCchH
Confidence 34455666666655555543211111 11122234455666777777777766 443332221 11233466777777
Q ss_pred HHHHHHHHHHHcC
Q 008183 286 TVLELFHLLEMRG 298 (575)
Q Consensus 286 ~A~~l~~~m~~~g 298 (575)
+|..-|.+....+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777666654
No 452
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=27.32 E-value=7.3e+02 Score=25.87 Aligned_cols=16 Identities=6% Similarity=0.219 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhcC
Q 008183 319 AGESEKWIERMKVRYK 334 (575)
Q Consensus 319 ~~~a~~~~~~m~~~~~ 334 (575)
+.-++.+++.+...+|
T Consensus 512 l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 512 LANIREYYDRALREFG 527 (568)
T ss_pred chHHHHHHHHHHHHhC
Confidence 4444455555544444
No 453
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.29 E-value=2.3e+02 Score=30.38 Aligned_cols=27 Identities=7% Similarity=0.189 Sum_probs=18.7
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCC
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIP 60 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~ 60 (575)
+.-|+ .|..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 55565 6777888899999999985443
No 454
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.27 E-value=2.3e+02 Score=21.52 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=35.4
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCC
Q 008183 121 SLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSR 181 (575)
Q Consensus 121 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 181 (575)
.+.+.++..|+-.+ .-.-...+..-+.+.+.++++.++.+...+|..+..++-..|.
T Consensus 24 ~v~~~L~~~gvlt~----~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 24 ELLIHLLQKDILTD----SMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHcCCCCH----HHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 45555555553222 1222233344567888888888888888888888888766554
No 455
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=26.81 E-value=1.6e+02 Score=17.95 Aligned_cols=18 Identities=28% Similarity=0.097 Sum_probs=9.4
Q ss_pred HHHHHHHHcCChHHHHHH
Q 008183 376 ALLSFSAIHGKADMASKM 393 (575)
Q Consensus 376 ~ll~~~~~~g~~~~a~~~ 393 (575)
.+...+-..|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344445555666666666
No 456
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=26.64 E-value=77 Score=23.40 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHHcCCccCCCcc
Q 008183 463 RTEDIYTKLAELMEECERLGYVPVWDEM 490 (575)
Q Consensus 463 ~~~~~~~~l~~l~~~m~~~g~~p~~~~~ 490 (575)
...++...+++...+++..|+.||...+
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3456677788888999999999997543
No 457
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.45 E-value=6.1e+02 Score=24.71 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCCCch
Q 008183 389 MASKMGKRLIDINPYDDS 406 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~~ 406 (575)
.|.+...++.+.+|..+.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 356677777888876554
No 458
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.14 E-value=1.5e+03 Score=29.01 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
..+|-...+..+..|.++.|....-.+.+..+ +..+.-.+......|+...|..++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 67899999999999999999988877777663 45788889999999999999999998875543
No 459
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.91 E-value=1.7e+02 Score=23.23 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=30.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 319 (575)
++..+...+..-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4444555566667777778887777767777766667776666643
No 460
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.63 E-value=2.2e+02 Score=20.68 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhC
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRF 148 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 148 (575)
+.+.|++++..+..-. ..++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 5666777666654432 55677788777766554
No 461
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.39 E-value=1.4e+02 Score=24.46 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhCC--CcccHHHHHHHHhHcCCChHHHHHHHc
Q 008183 18 PRIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFN 57 (575)
Q Consensus 18 ~~~~~~~~~~~g~--~~~~~~~~li~~~~~~g~~~~A~~~f~ 57 (575)
+..++..+.+.|+ .-...|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555555 344445555555555555555555553
No 462
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.04 E-value=7.1e+02 Score=25.00 Aligned_cols=55 Identities=0% Similarity=-0.123 Sum_probs=35.1
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCcCHH--HHHHHHHHHHh--cccHHHHHHHHHHHHHh
Q 008183 175 GFAQNSRLVDSLSVFADMRSSDVGSTMY--CVSGALRAAAE--LAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~--~~~~~~a~~~~~~~~~~ 230 (575)
.+.+.+++..|.++|+.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788888999999888876 555554 33344444432 45666777777766554
No 463
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.73 E-value=6.4e+02 Score=24.37 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=31.9
Q ss_pred hhHHHHHH-HHHHhCCC-hHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHH
Q 008183 135 PFCGSALV-HFYSRFRS-PDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212 (575)
Q Consensus 135 ~~~~~~li-~~~~~~g~-~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 212 (575)
..+.+.|. +-+.+.|= ..-|.++|...... -.-|.+++++.+.+.-+.-+++ ++||..+-......+.
T Consensus 165 ~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E--k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft 234 (412)
T KOG2297|consen 165 ATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE--KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFT 234 (412)
T ss_pred HHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh--ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHh
Confidence 33444443 34444442 33466666654321 1245566665444433333333 3555555444444444
Q ss_pred hcc
Q 008183 213 ELA 215 (575)
Q Consensus 213 ~~~ 215 (575)
..|
T Consensus 235 ~ag 237 (412)
T KOG2297|consen 235 DAG 237 (412)
T ss_pred Hhh
Confidence 433
No 464
>PRK13342 recombination factor protein RarA; Reviewed
Probab=24.62 E-value=7.5e+02 Score=25.13 Aligned_cols=163 Identities=12% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHhhC---CCCCc-CCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHH
Q 008183 80 SLNIFLSMLRH---PTLSF-LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAK 155 (575)
Q Consensus 80 a~~~~~~m~~~---~~~~~-~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 155 (575)
...++...... + . ..+......++..+ .| +...+..+++.+... .-......+.++.
T Consensus 156 i~~lL~~~l~~~~~~---~i~i~~~al~~l~~~s--~G-d~R~aln~Le~~~~~-------------~~~It~~~v~~~~ 216 (413)
T PRK13342 156 IEQLLKRALEDKERG---LVELDDEALDALARLA--NG-DARRALNLLELAALG-------------VDSITLELLEEAL 216 (413)
T ss_pred HHHHHHHHHHHhhcC---CCCCCHHHHHHHHHhC--CC-CHHHHHHHHHHHHHc-------------cCCCCHHHHHHHH
Q ss_pred HHHHhcCCCCcchHHHHHHHHHh---CCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc-----cHHHHHHHHHHH
Q 008183 156 KVFDEIRERDVVCYGAMIVGFAQ---NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA-----AMEQCRVIHGHA 227 (575)
Q Consensus 156 ~~f~~m~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~ 227 (575)
........++...+..+++++.+ .++++.|+..+..|.+.|..|....-..+..++...| ....+...++..
T Consensus 217 ~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 217 QKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred hhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Q ss_pred HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 228 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
...|++.-.....-.+-.++.+-+-..+...++.
T Consensus 297 ~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~ 330 (413)
T PRK13342 297 ERIGMPEGRIALAQAVIYLALAPKSNAAYTAINA 330 (413)
T ss_pred HHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHH
No 465
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=24.43 E-value=1.5e+02 Score=28.49 Aligned_cols=78 Identities=6% Similarity=-0.009 Sum_probs=48.6
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 008183 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRA-LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA 412 (575)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 412 (575)
..|...|...+.--.+.|.+.+.-.+|.+. ...| |+..|-. --.-+..+++++.+..++.+.+..+|.+|..|....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345555555554444555666666666555 3345 4555533 223345678888889999999999988888766544
Q ss_pred H
Q 008183 413 N 413 (575)
Q Consensus 413 ~ 413 (575)
+
T Consensus 184 r 184 (435)
T COG5191 184 R 184 (435)
T ss_pred H
Confidence 3
No 466
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.22 E-value=7.5e+02 Score=24.99 Aligned_cols=62 Identities=6% Similarity=0.013 Sum_probs=38.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCC--CcCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV--GSTMYCVSGALRAAAELAAMEQCRVIHGHAV 228 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 228 (575)
..+.-+...|...|+++.|++.|.+.+.-.. +-....|..+|....-.+++.....+-....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 3566788889999999999999998654211 1122344455555555666665555444443
No 467
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.22 E-value=1.5e+02 Score=23.88 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008183 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL 318 (575)
Q Consensus 273 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 318 (575)
.++..+...+.+-.|.++++.|.+.|...+..|.-..|..+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4566666666777888888888888888887777777777766653
No 468
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=23.59 E-value=3.4e+02 Score=29.07 Aligned_cols=93 Identities=15% Similarity=-0.054 Sum_probs=45.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+...|..-+.-+...++.. ....+++...-...+.....-++..|.+.|-.+.+..+.+.+-..-+ ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 4455666666555544333 45555555443345566677788888888888888888876654422 2334666677
Q ss_pred HHHccCCHHHHHHHHhh
Q 008183 245 GYGKAGIVSDARRVFDE 261 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~ 261 (575)
.+.++|+.+....+-+.
T Consensus 447 ~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADR 463 (566)
T ss_dssp HHH--------------
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 78888888777666655
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.15 E-value=1.4e+02 Score=27.40 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=49.9
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
..+.++.+.+.+++.++.++-|.....|..+...-.++|+++.|.+.+++..+-+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 35678899999999999999999999999999999999999999999998876543
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.04 E-value=4.6e+02 Score=22.06 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
-.|.++|+.+.+.+...+..|.-.-++.+...|
T Consensus 37 ~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 37 LSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred CCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 444444444444433333332222333444433
No 471
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=22.89 E-value=3.4e+02 Score=20.57 Aligned_cols=62 Identities=23% Similarity=0.175 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhCCCch-HHHHHHHHH
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPY--DDSAYVIVANVLSGVGRWD-EVAEVRKVM 431 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 431 (575)
|...--.+...+...|++++|.+.+-.+++.++. +...-..|+.++...|.-+ .+.+..++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566666777777778888887777777776643 3456666777776666643 344444333
No 472
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=22.86 E-value=4.2e+02 Score=23.77 Aligned_cols=59 Identities=24% Similarity=0.185 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
..+.++..|...||++.|-++|.-++...+.|.. .|..=+..+.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 3455666666667777777777666665544433 3444444555555444444555554
No 473
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.68 E-value=6.8e+02 Score=23.93 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=32.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHhcCCHHHHH
Q 008183 276 AGYAQQGDQSTVLELFHLLEMRGFAPDEYS-------FLAVLTALCNAGLAGESE 323 (575)
Q Consensus 276 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a~ 323 (575)
.-..+.+++++|+..+.++...|+..|..+ ...+...|...|+...-.
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 345566888999999999988887766544 444555566666554433
No 474
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.55 E-value=4.9e+02 Score=25.49 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=61.1
Q ss_pred HHHHhccCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 008183 346 ISAMGRAGRLEDAERIAMAM----PFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 419 (575)
..-|.+..++..|...|.+- .-.|| .+.|+.=..+-.-.|++..|+.-..+++..+|.+..+|..=..++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 34577788889998888765 12343 6667776667777899999999999999999998888777667777666
Q ss_pred CchHHHHHH
Q 008183 420 RWDEVAEVR 428 (575)
Q Consensus 420 ~~~~a~~~~ 428 (575)
++.+|....
T Consensus 168 ~~~~a~nw~ 176 (390)
T KOG0551|consen 168 RFAEAVNWC 176 (390)
T ss_pred HHHHHHHHH
Confidence 655555443
No 475
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.47 E-value=8.9e+02 Score=25.22 Aligned_cols=31 Identities=6% Similarity=-0.077 Sum_probs=16.9
Q ss_pred hhCCCCchhHHHHHHHHHHhCCChHHHHHHHHh
Q 008183 128 KLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDE 160 (575)
Q Consensus 128 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 160 (575)
+.|+..+..+...++.. ..|++..|...++.
T Consensus 191 ~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~ 221 (472)
T PRK14962 191 AEGIEIDREALSFIAKR--ASGGLRDALTMLEQ 221 (472)
T ss_pred HcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 34555555555555442 24666666666655
No 476
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=22.39 E-value=1.9e+02 Score=20.98 Aligned_cols=47 Identities=17% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008183 271 WNAMMAGYAQ---QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317 (575)
Q Consensus 271 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 317 (575)
|..++..+.+ .|+.+++.+++++..+.|..|.......+..+..+.|
T Consensus 1 ~~~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 1 WEELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp -HHHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
No 477
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=20.84 E-value=7.2e+02 Score=23.50 Aligned_cols=185 Identities=12% Similarity=-0.003 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHH----cCChHHHHH
Q 008183 215 AAMEQCRVIHGHAVVSGLD-RNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ----QGDQSTVLE 289 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 289 (575)
+++..+...+......+.. -................+..+|.++|..+...........|...|.. ..+..+|..
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~ 134 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALK 134 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHH--HHHHHHHHHHHhcCCCCChhHHHHHHHHH----hccCChHHH
Q 008183 290 LFHLLEMRGFAPDEYSFLAVLTALCNA-----GLAG--ESEKWIERMKVRYKLEPGLEHYTCLISAM----GRAGRLEDA 358 (575)
Q Consensus 290 l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~g~~~~A 358 (575)
.|++..+.|..+...+...+-..+... -..+ .|...+... ...+ +......+...| +-..++++|
T Consensus 135 ~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a-a~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 135 YYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA-AELG---NPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH-HHhc---CHHHHHHHHHHHHcCCCCCcCHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhcCCCC
Q 008183 359 ERIAMAMPFEPDAAVWRALLSFSAIHG---------------KADMASKMGKRLIDINPYD 404 (575)
Q Consensus 359 ~~~~~~m~~~p~~~~~~~ll~~~~~~g---------------~~~~a~~~~~~~~~~~p~~ 404 (575)
..+|...-..-+......+- .+...| +...|...+......++..
T Consensus 211 ~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 211 FRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
No 478
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=20.56 E-value=7e+02 Score=23.26 Aligned_cols=117 Identities=13% Similarity=0.002 Sum_probs=62.0
Q ss_pred HHccCCHHHHHHHHhhhCC-CCChhh-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 008183 246 YGKAGIVSDARRVFDENLS-VLNSIA-WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA-LCNAGLAGES 322 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a 322 (575)
|.....++.|...+-+++. .|++.+ |+.=+.++.+..+++.+..--+...+ +.||.+--..++.. ......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 4555667777777765444 555544 45566677777777777665555444 56666554444433 3455666777
Q ss_pred HHHHHHHH---HhcCCCCChhHHHHHHHHHhccCChHHHHHHHHh
Q 008183 323 EKWIERMK---VRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMA 364 (575)
Q Consensus 323 ~~~~~~m~---~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (575)
...+.+.. ....+.|.......|.++--+.=...+..++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 76665541 1222333344444444443333333334444433
No 479
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=20.43 E-value=8.6e+02 Score=27.55 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=6.2
Q ss_pred hccCChHHHHHHHH
Q 008183 350 GRAGRLEDAERIAM 363 (575)
Q Consensus 350 ~~~g~~~~A~~~~~ 363 (575)
+..|+.+-+..+++
T Consensus 630 a~~g~~~~v~~Ll~ 643 (823)
T PLN03192 630 AKRNDLTAMKELLK 643 (823)
T ss_pred HHhCCHHHHHHHHH
Confidence 44444444444443
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.36 E-value=4.6e+02 Score=22.72 Aligned_cols=13 Identities=0% Similarity=-0.245 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhC
Q 008183 219 QCRVIHGHAVVSG 231 (575)
Q Consensus 219 ~a~~~~~~~~~~g 231 (575)
.|.++++.+.+.+
T Consensus 43 Sa~eI~~~L~~~~ 55 (169)
T PRK11639 43 SAYDLLDLLREAE 55 (169)
T ss_pred CHHHHHHHHHhhC
Confidence 3444444444443
No 481
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=20.16 E-value=8.7e+02 Score=24.69 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008183 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG 385 (575)
Q Consensus 325 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 385 (575)
+|..+ .+..+.||...+.-+..+|.+.=-++-|-++++-.-..-+...+.+.+..+.-..
T Consensus 461 L~~Hl-~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgIlklye 520 (586)
T KOG2223|consen 461 LFTHL-KKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGILKLYE 520 (586)
T ss_pred HHHHH-HhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHHHHHcc
Confidence 34444 4678999999999999999999889988888877644556666777666655443
Done!