Query 008183
Match_columns 575
No_of_seqs 637 out of 3977
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 20:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.1E-36 2.1E-40 320.3 37.2 416 12-435 97-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.7E-35 2.6E-39 311.7 27.3 378 41-434 61-504 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.4E-29 4.9E-34 261.1 23.2 181 169-350 29-221 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.1E-29 1.7E-33 257.0 20.8 211 80-316 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-24 5E-29 218.9 40.7 370 40-420 6-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-23 3.9E-28 212.4 37.7 347 74-434 9-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3.4E-21 1.2E-25 198.2 33.7 309 96-414 23-372 (450)
8 2gw1_A Mitochondrial precursor 99.9 2.2E-20 7.5E-25 195.4 33.8 391 34-435 7-479 (514)
9 2gw1_A Mitochondrial precursor 99.9 1.6E-20 5.4E-25 196.5 31.2 390 12-411 19-489 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 7.1E-20 2.4E-24 188.2 34.2 345 66-423 28-443 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.3E-18 4.4E-23 183.1 34.3 389 33-435 25-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.8 3.1E-17 1.1E-21 162.6 34.8 309 99-416 3-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.8 4.1E-17 1.4E-21 161.7 33.2 295 134-434 2-335 (359)
14 3hym_B Cell division cycle pro 99.8 2.3E-17 8E-22 161.6 29.0 289 131-422 18-322 (330)
15 1b89_A Protein (clathrin heavy 99.8 2.1E-17 7.1E-22 162.8 22.7 348 45-435 15-386 (449)
16 1fch_A Peroxisomal targeting s 99.8 8.6E-17 2.9E-21 160.4 26.3 279 146-429 36-354 (368)
17 3hym_B Cell division cycle pro 99.8 3.4E-16 1.2E-20 153.2 29.2 265 164-434 20-299 (330)
18 2ooe_A Cleavage stimulation fa 99.8 2.7E-15 9.1E-20 157.6 37.1 399 23-434 3-492 (530)
19 3fp2_A TPR repeat-containing p 99.8 1.7E-16 5.7E-21 166.9 27.8 360 64-435 25-458 (537)
20 1b89_A Protein (clathrin heavy 99.7 5.5E-18 1.9E-22 166.9 10.8 250 147-429 15-264 (449)
21 4eqf_A PEX5-related protein; a 99.7 1.6E-16 5.4E-21 158.5 21.5 261 165-430 64-352 (365)
22 3mkr_A Coatomer subunit epsilo 99.7 5E-15 1.7E-19 142.3 29.0 267 145-426 9-286 (291)
23 3spa_A Mtrpol, DNA-directed RN 99.7 5.7E-18 1.9E-22 179.5 8.1 163 131-294 123-307 (1134)
24 2xm6_A Protein corresponding t 99.7 5.5E-14 1.9E-18 146.0 37.7 363 31-416 37-451 (490)
25 1fch_A Peroxisomal targeting s 99.7 5.6E-16 1.9E-20 154.5 21.1 277 149-434 15-314 (368)
26 2xm6_A Protein corresponding t 99.7 2.2E-13 7.5E-18 141.5 41.1 351 61-436 36-434 (490)
27 3spa_A Mtrpol, DNA-directed RN 99.7 1.3E-17 4.5E-22 176.8 8.8 132 233-365 124-262 (1134)
28 3cv0_A Peroxisome targeting si 99.7 2.5E-15 8.6E-20 146.8 24.6 260 166-431 21-312 (327)
29 4eqf_A PEX5-related protein; a 99.7 5.5E-15 1.9E-19 147.2 25.2 226 98-329 64-307 (365)
30 3mkr_A Coatomer subunit epsilo 99.7 6.2E-15 2.1E-19 141.7 23.9 248 173-435 6-265 (291)
31 3cv0_A Peroxisome targeting si 99.7 3.2E-14 1.1E-18 138.9 25.8 225 99-329 21-266 (327)
32 1xi4_A Clathrin heavy chain; a 99.6 7.2E-13 2.5E-17 145.2 37.7 350 18-418 967-1327(1630)
33 4g1t_A Interferon-induced prot 99.6 1.5E-13 5E-18 142.0 31.3 373 33-445 51-470 (472)
34 2ooe_A Cleavage stimulation fa 99.6 1.2E-12 4.3E-17 137.2 37.8 383 12-403 25-495 (530)
35 1xi4_A Clathrin heavy chain; a 99.6 9.5E-12 3.3E-16 136.5 38.5 365 12-427 998-1377(1630)
36 2pl2_A Hypothetical conserved 99.6 2.1E-13 7.1E-18 125.0 21.1 196 233-432 2-212 (217)
37 3uq3_A Heat shock protein STI1 99.6 4.1E-13 1.4E-17 126.0 22.8 218 203-434 7-236 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.9E-13 1E-17 128.6 21.5 242 178-428 17-269 (275)
39 3uq3_A Heat shock protein STI1 99.6 3.2E-13 1.1E-17 126.8 20.9 234 167-412 6-254 (258)
40 3u4t_A TPR repeat-containing p 99.5 1.3E-11 4.4E-16 117.0 27.7 251 138-416 6-266 (272)
41 1ouv_A Conserved hypothetical 99.5 1.4E-11 4.8E-16 117.1 26.9 226 165-403 5-254 (273)
42 1ouv_A Conserved hypothetical 99.5 2.3E-11 7.9E-16 115.5 27.8 225 200-436 5-253 (273)
43 2ho1_A Type 4 fimbrial biogene 99.5 4.4E-12 1.5E-16 118.8 22.4 197 236-434 37-238 (252)
44 2ho1_A Type 4 fimbrial biogene 99.5 8.9E-12 3E-16 116.7 24.4 206 166-408 37-246 (252)
45 2h6f_A Protein farnesyltransfe 99.5 6.1E-12 2.1E-16 125.0 24.4 244 166-416 97-364 (382)
46 2vq2_A PILW, putative fimbrial 99.5 5.9E-12 2E-16 115.3 22.7 196 236-433 8-210 (225)
47 2pl2_A Hypothetical conserved 99.5 4.9E-12 1.7E-16 115.8 21.9 194 165-365 4-211 (217)
48 2vq2_A PILW, putative fimbrial 99.5 2.2E-11 7.5E-16 111.5 24.8 203 203-409 10-220 (225)
49 2q7f_A YRRB protein; TPR, prot 99.5 2.9E-12 9.8E-17 119.2 18.9 170 239-411 60-233 (243)
50 2q7f_A YRRB protein; TPR, prot 99.4 4.9E-12 1.7E-16 117.6 19.6 199 234-435 21-223 (243)
51 4a1s_A PINS, partner of inscut 99.4 2E-12 6.8E-17 130.8 16.8 259 173-433 55-371 (411)
52 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.9E-12 2E-16 119.4 18.6 218 168-394 45-269 (275)
53 3sf4_A G-protein-signaling mod 99.4 8.6E-12 2.9E-16 125.5 20.4 196 238-433 89-335 (406)
54 3ro2_A PINS homolog, G-protein 99.4 1.1E-11 3.7E-16 121.0 20.3 260 173-434 12-332 (338)
55 2h6f_A Protein farnesyltransfe 99.4 1.2E-11 4.2E-16 122.9 20.7 227 202-434 98-348 (382)
56 3e4b_A ALGK; tetratricopeptide 99.4 1.7E-11 5.9E-16 125.5 22.0 374 39-433 9-420 (452)
57 3u4t_A TPR repeat-containing p 99.4 5.3E-11 1.8E-15 112.7 23.4 226 205-435 7-251 (272)
58 4g1t_A Interferon-induced prot 99.4 1.5E-10 5E-15 119.4 28.6 295 135-434 51-401 (472)
59 3sf4_A G-protein-signaling mod 99.4 5.3E-12 1.8E-16 127.1 16.9 291 100-422 10-364 (406)
60 3e4b_A ALGK; tetratricopeptide 99.4 7.2E-11 2.5E-15 120.8 24.3 310 106-436 10-353 (452)
61 4abn_A Tetratricopeptide repea 99.4 6.9E-12 2.4E-16 129.2 15.7 209 217-431 84-318 (474)
62 3vtx_A MAMA; tetratricopeptide 99.3 1.7E-10 5.9E-15 102.2 20.7 163 268-434 5-170 (184)
63 4a1s_A PINS, partner of inscut 99.3 4.9E-11 1.7E-15 120.4 18.4 265 105-402 54-374 (411)
64 3ro2_A PINS homolog, G-protein 99.3 8.2E-11 2.8E-15 114.7 19.3 268 105-402 11-334 (338)
65 2ond_A Cleavage stimulation fa 99.3 1.6E-09 5.5E-14 104.8 27.9 184 218-405 81-275 (308)
66 3ulq_A Response regulator aspa 99.3 1.6E-10 5.3E-15 115.7 21.0 228 172-399 109-367 (383)
67 3vtx_A MAMA; tetratricopeptide 99.3 1.2E-10 4.1E-15 103.3 17.8 168 234-405 3-175 (184)
68 4e6h_A MRNA 3'-END-processing 99.3 1E-08 3.5E-13 108.8 35.1 416 17-436 50-572 (679)
69 3nf1_A KLC 1, kinesin light ch 99.3 2E-11 6.8E-16 118.0 12.3 164 167-330 28-222 (311)
70 3ulq_A Response regulator aspa 99.2 1.3E-10 4.4E-15 116.4 17.1 226 207-433 109-367 (383)
71 2ond_A Cleavage stimulation fa 99.2 3.3E-09 1.1E-13 102.6 26.2 212 117-332 33-270 (308)
72 1hz4_A MALT regulatory protein 99.2 6.1E-09 2.1E-13 103.6 28.9 259 175-433 23-321 (373)
73 4gyw_A UDP-N-acetylglucosamine 99.2 1.7E-10 5.8E-15 123.9 17.9 161 268-432 9-172 (723)
74 3q15_A PSP28, response regulat 99.2 5.9E-10 2E-14 111.3 18.4 222 210-432 110-363 (378)
75 4abn_A Tetratricopeptide repea 99.2 4.8E-10 1.7E-14 115.4 18.0 195 165-365 101-318 (474)
76 3nf1_A KLC 1, kinesin light ch 99.2 1.2E-10 4.2E-15 112.3 12.1 246 135-402 27-309 (311)
77 3as5_A MAMA; tetratricopeptide 99.2 2.5E-09 8.7E-14 94.1 19.3 161 237-432 9-171 (186)
78 3as5_A MAMA; tetratricopeptide 99.2 1.6E-09 5.4E-14 95.5 18.0 129 304-435 9-140 (186)
79 4i17_A Hypothetical protein; T 99.1 3E-09 1E-13 97.8 19.4 205 199-414 5-223 (228)
80 3q15_A PSP28, response regulat 99.1 2.1E-08 7.1E-13 100.0 26.9 229 172-400 107-365 (378)
81 1hz4_A MALT regulatory protein 99.1 2.2E-08 7.7E-13 99.5 24.0 255 144-401 23-323 (373)
82 4e6h_A MRNA 3'-END-processing 99.1 1.5E-07 5.1E-12 99.9 31.2 386 12-406 79-576 (679)
83 4gyw_A UDP-N-acetylglucosamine 99.1 1.7E-09 5.7E-14 116.2 15.9 162 235-400 8-174 (723)
84 4i17_A Hypothetical protein; T 99.0 5.2E-09 1.8E-13 96.1 16.7 190 234-434 5-209 (228)
85 3edt_B KLC 2, kinesin light ch 99.0 3.4E-09 1.2E-13 100.4 14.4 130 201-330 43-196 (283)
86 1qqe_A Vesicular transport pro 99.0 2.2E-08 7.7E-13 95.8 19.7 216 150-403 32-272 (292)
87 1qqe_A Vesicular transport pro 98.9 8.1E-08 2.8E-12 91.9 20.4 207 115-369 32-271 (292)
88 3mv2_B Coatomer subunit epsilo 98.9 3.4E-07 1.2E-11 86.5 23.3 57 240-296 104-164 (310)
89 3edt_B KLC 2, kinesin light ch 98.9 8.6E-08 3E-12 90.5 19.3 131 166-296 43-197 (283)
90 3mv2_B Coatomer subunit epsilo 98.9 5.9E-07 2E-11 84.8 23.1 159 270-433 102-281 (310)
91 3qky_A Outer membrane assembly 98.9 7.4E-08 2.5E-12 90.4 17.1 168 236-406 15-230 (261)
92 3qky_A Outer membrane assembly 98.9 2.6E-07 9E-12 86.6 20.8 171 264-434 11-224 (261)
93 2fo7_A Synthetic consensus TPR 98.8 1.9E-07 6.7E-12 76.8 16.9 128 270-432 3-130 (136)
94 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.3E-07 1.1E-11 83.9 19.9 183 236-436 4-215 (225)
95 2fo7_A Synthetic consensus TPR 98.8 1.2E-07 4E-12 78.2 15.4 95 341-435 3-99 (136)
96 2pzi_A Probable serine/threoni 98.8 3.8E-08 1.3E-12 106.0 14.6 169 247-420 402-583 (681)
97 4ga2_A E3 SUMO-protein ligase 98.8 1.4E-08 4.7E-13 86.6 7.7 136 280-420 9-149 (150)
98 3qou_A Protein YBBN; thioredox 98.8 1.8E-07 6E-12 89.3 16.2 176 252-432 102-282 (287)
99 3rjv_A Putative SEL1 repeat pr 98.7 9.2E-07 3.1E-11 80.1 19.3 173 255-436 5-199 (212)
100 2pzi_A Probable serine/threoni 98.7 5.9E-07 2E-11 96.6 19.7 189 212-406 402-608 (681)
101 2ifu_A Gamma-SNAP; membrane fu 98.7 6.7E-07 2.3E-11 86.2 17.6 221 179-427 4-254 (307)
102 2vsy_A XCC0866; transferase, g 98.7 4.7E-07 1.6E-11 95.5 17.3 160 249-412 2-169 (568)
103 2r5s_A Uncharacterized protein 98.7 6.1E-07 2.1E-11 78.5 15.1 155 138-295 9-171 (176)
104 2vsy_A XCC0866; transferase, g 98.6 3E-07 1E-11 97.0 15.3 151 281-435 2-158 (568)
105 3urz_A Uncharacterized protein 98.6 8.8E-07 3E-11 79.9 16.4 133 240-378 58-197 (208)
106 3urz_A Uncharacterized protein 98.6 1.2E-06 4.1E-11 79.0 16.7 128 272-404 58-190 (208)
107 3dra_A Protein farnesyltransfe 98.6 1.2E-05 4.3E-10 76.4 23.9 218 182-433 49-286 (306)
108 3qou_A Protein YBBN; thioredox 98.6 2.2E-06 7.6E-11 81.6 18.7 163 200-364 116-280 (287)
109 2r5s_A Uncharacterized protein 98.6 4.1E-07 1.4E-11 79.6 12.4 157 239-432 9-171 (176)
110 3gyz_A Chaperone protein IPGC; 98.6 2.2E-07 7.5E-12 78.9 10.2 102 334-435 30-134 (151)
111 3rjv_A Putative SEL1 repeat pr 98.6 2.2E-06 7.6E-11 77.5 17.3 173 220-402 5-199 (212)
112 3dra_A Protein farnesyltransfe 98.6 7.4E-05 2.5E-09 71.1 27.5 230 143-411 41-299 (306)
113 2uy1_A Cleavage stimulation fa 98.5 0.00011 3.9E-09 75.3 30.8 97 14-129 10-118 (493)
114 3u3w_A Transcriptional activat 98.5 7.9E-06 2.7E-10 77.9 20.3 92 238-329 157-263 (293)
115 4ga2_A E3 SUMO-protein ligase 98.5 1.7E-07 5.9E-12 79.6 7.6 120 311-433 5-128 (150)
116 2yhc_A BAMD, UPF0169 lipoprote 98.5 4E-06 1.4E-10 76.5 17.0 185 200-405 3-218 (225)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.3E-06 8E-11 77.1 15.1 125 306-435 9-151 (213)
118 4gco_A Protein STI-1; structur 98.5 5.3E-07 1.8E-11 74.0 9.8 94 340-433 14-109 (126)
119 3u3w_A Transcriptional activat 98.5 1.2E-05 4.1E-10 76.7 20.7 159 274-432 81-264 (293)
120 2c2l_A CHIP, carboxy terminus 98.5 7.2E-07 2.4E-11 84.7 11.1 192 236-434 4-199 (281)
121 2uy1_A Cleavage stimulation fa 98.5 2.7E-05 9.3E-10 79.9 23.7 319 80-431 33-380 (493)
122 2qfc_A PLCR protein; TPR, HTH, 98.5 5.3E-06 1.8E-10 79.2 17.3 163 270-432 77-264 (293)
123 2ifu_A Gamma-SNAP; membrane fu 98.4 1.5E-06 5E-11 83.8 12.8 197 213-432 3-222 (307)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.4 4.6E-06 1.6E-10 75.1 15.2 122 140-297 11-150 (213)
125 4gco_A Protein STI-1; structur 98.4 3.9E-06 1.3E-10 68.7 12.8 108 304-414 14-124 (126)
126 2vgx_A Chaperone SYCD; alterna 98.4 7.5E-07 2.6E-11 75.4 8.4 101 334-434 15-118 (148)
127 1na0_A Designed protein CTPR3; 98.4 8.8E-06 3E-10 65.7 14.2 113 304-418 10-124 (125)
128 1a17_A Serine/threonine protei 98.4 8.6E-06 3E-10 69.8 14.6 125 305-432 15-144 (166)
129 2qfc_A PLCR protein; TPR, HTH, 98.3 1.4E-05 4.7E-10 76.3 16.8 160 240-399 79-265 (293)
130 2vyi_A SGTA protein; chaperone 98.3 9.2E-06 3.1E-10 66.2 13.2 117 303-421 12-130 (131)
131 2xcb_A PCRH, regulatory protei 98.3 3.2E-06 1.1E-10 70.9 10.2 100 335-434 13-115 (142)
132 3gw4_A Uncharacterized protein 98.3 4.1E-06 1.4E-10 74.6 11.5 115 147-261 4-132 (203)
133 1p5q_A FKBP52, FK506-binding p 98.3 4.7E-06 1.6E-10 81.3 12.7 94 339-432 196-292 (336)
134 4f3v_A ESX-1 secretion system 98.3 3.6E-06 1.2E-10 78.3 11.2 191 213-409 18-245 (282)
135 2kck_A TPR repeat; tetratricop 98.3 6.8E-06 2.3E-10 64.9 11.6 98 339-436 6-108 (112)
136 2lni_A Stress-induced-phosphop 98.3 9.6E-06 3.3E-10 66.4 12.7 113 304-419 17-132 (133)
137 3gw4_A Uncharacterized protein 98.3 9.5E-06 3.2E-10 72.2 12.8 150 249-399 5-175 (203)
138 1a17_A Serine/threonine protei 98.2 1.8E-05 6.3E-10 67.7 13.8 25 340-364 82-106 (166)
139 2fbn_A 70 kDa peptidylprolyl i 98.2 9.3E-07 3.2E-11 79.0 5.2 172 241-434 9-186 (198)
140 3upv_A Heat shock protein STI1 98.2 8.3E-06 2.8E-10 66.5 10.6 95 340-434 5-101 (126)
141 2e2e_A Formate-dependent nitri 98.2 6.6E-06 2.3E-10 71.7 10.2 116 316-434 23-144 (177)
142 2c2l_A CHIP, carboxy terminus 98.2 1.3E-05 4.4E-10 75.9 12.9 191 201-401 4-200 (281)
143 3q7a_A Farnesyltransferase alp 98.2 0.0016 5.3E-08 62.7 27.3 174 174-354 62-257 (349)
144 4f3v_A ESX-1 secretion system 98.2 4.3E-05 1.5E-09 71.1 15.6 180 147-330 18-235 (282)
145 1hxi_A PEX5, peroxisome target 98.2 5.4E-06 1.9E-10 67.3 8.2 94 341-434 19-114 (121)
146 3q7a_A Farnesyltransferase alp 98.2 0.00024 8.1E-09 68.4 20.9 215 215-433 68-330 (349)
147 1na0_A Designed protein CTPR3; 98.2 5.7E-05 1.9E-09 60.7 14.5 59 270-329 45-103 (125)
148 3gyz_A Chaperone protein IPGC; 98.1 5E-05 1.7E-09 64.1 14.1 94 203-297 38-133 (151)
149 3sz7_A HSC70 cochaperone (SGT) 98.1 1E-05 3.5E-10 69.6 10.0 94 340-433 12-107 (164)
150 3q49_B STIP1 homology and U bo 98.1 2.2E-05 7.4E-10 64.9 11.7 97 338-434 8-106 (137)
151 3dss_A Geranylgeranyl transfer 98.1 0.0011 3.9E-08 63.4 24.6 192 217-414 90-318 (331)
152 2e2e_A Formate-dependent nitri 98.1 3.1E-05 1.1E-09 67.3 12.9 125 279-407 21-151 (177)
153 2lni_A Stress-induced-phosphop 98.1 1.9E-05 6.6E-10 64.6 10.8 97 338-434 15-113 (133)
154 1elw_A TPR1-domain of HOP; HOP 98.1 2.4E-05 8.3E-10 62.2 11.2 93 341-433 6-100 (118)
155 2dba_A Smooth muscle cell asso 98.1 3E-05 1E-09 64.8 12.0 93 340-432 29-126 (148)
156 1elw_A TPR1-domain of HOP; HOP 98.1 8.1E-05 2.8E-09 59.1 13.7 107 305-414 6-115 (118)
157 2vgx_A Chaperone SYCD; alterna 98.1 2E-05 6.7E-10 66.5 10.2 91 238-329 23-115 (148)
158 2vyi_A SGTA protein; chaperone 98.1 5.2E-05 1.8E-09 61.5 12.7 91 169-261 15-105 (131)
159 2dba_A Smooth muscle cell asso 98.1 9.1E-05 3.1E-09 61.8 14.4 110 303-415 28-143 (148)
160 2fbn_A 70 kDa peptidylprolyl i 98.1 7.1E-06 2.4E-10 73.1 7.8 54 142-195 11-67 (198)
161 1p5q_A FKBP52, FK506-binding p 98.0 5.1E-05 1.8E-09 73.8 14.0 122 165-287 146-283 (336)
162 4gcn_A Protein STI-1; structur 98.0 1.3E-05 4.6E-10 65.6 8.3 94 340-433 9-111 (127)
163 3upv_A Heat shock protein STI1 98.0 5.1E-05 1.8E-09 61.7 11.5 106 305-413 6-120 (126)
164 2xcb_A PCRH, regulatory protei 98.0 3.7E-05 1.3E-09 64.2 10.2 102 305-409 20-124 (142)
165 3dss_A Geranylgeranyl transfer 98.0 0.001 3.5E-08 63.7 20.9 180 252-434 90-304 (331)
166 4b4t_Q 26S proteasome regulato 98.0 0.00018 6E-09 72.6 16.6 162 271-432 58-243 (434)
167 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 6.3E-05 2.2E-09 76.6 13.0 95 339-433 317-414 (457)
168 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00014 4.9E-09 62.2 13.2 90 239-329 14-105 (164)
169 3n71_A Histone lysine methyltr 97.9 9.6E-05 3.3E-09 75.3 13.9 124 312-435 318-465 (490)
170 4b4t_Q 26S proteasome regulato 97.9 0.0003 1E-08 70.8 17.7 162 204-365 58-242 (434)
171 4gcn_A Protein STI-1; structur 97.9 0.00016 5.5E-09 59.0 12.5 91 239-329 11-109 (127)
172 3q49_B STIP1 homology and U bo 97.9 0.0001 3.5E-09 60.7 10.9 99 302-403 8-109 (137)
173 2hr2_A Hypothetical protein; a 97.9 5.4E-05 1.8E-09 63.6 8.8 62 372-433 58-130 (159)
174 2xev_A YBGF; tetratricopeptide 97.9 4.8E-05 1.6E-09 62.0 8.5 89 345-433 8-104 (129)
175 1elr_A TPR2A-domain of HOP; HO 97.9 5.9E-05 2E-09 61.3 9.0 95 340-434 5-108 (131)
176 3k9i_A BH0479 protein; putativ 97.8 1.5E-05 5.2E-10 64.0 5.2 82 352-433 3-89 (117)
177 1wao_1 Serine/threonine protei 97.8 3.9E-05 1.3E-09 78.5 9.2 114 313-429 16-134 (477)
178 3ro3_A PINS homolog, G-protein 97.8 0.00013 4.4E-09 61.6 11.2 25 407-431 131-155 (164)
179 3rkv_A Putative peptidylprolyl 97.8 6.3E-05 2.1E-09 64.4 9.0 64 371-434 63-126 (162)
180 3ro3_A PINS homolog, G-protein 97.8 0.00018 6E-09 60.8 11.5 134 269-402 10-160 (164)
181 2kck_A TPR repeat; tetratricop 97.8 0.00023 7.8E-09 55.8 11.4 91 238-329 8-103 (112)
182 2xev_A YBGF; tetratricopeptide 97.8 0.00036 1.2E-08 56.6 12.9 96 310-408 9-113 (129)
183 1hxi_A PEX5, peroxisome target 97.8 0.00013 4.6E-09 58.9 9.6 93 309-404 23-118 (121)
184 1elr_A TPR2A-domain of HOP; HO 97.8 0.00028 9.5E-09 57.1 11.7 57 272-329 8-64 (131)
185 1ihg_A Cyclophilin 40; ppiase 97.8 0.00018 6.3E-09 70.8 12.3 88 339-426 273-362 (370)
186 1dce_A Protein (RAB geranylger 97.7 0.0021 7.2E-08 67.0 20.6 168 252-423 45-244 (567)
187 1wao_1 Serine/threonine protei 97.6 0.00043 1.5E-08 70.8 13.3 115 245-363 15-134 (477)
188 2if4_A ATFKBP42; FKBP-like, al 97.6 0.0001 3.5E-09 71.8 8.2 147 268-434 179-328 (338)
189 2l6j_A TPR repeat-containing p 97.6 2.2E-05 7.6E-10 62.0 2.7 92 338-429 3-102 (111)
190 3k9i_A BH0479 protein; putativ 97.6 5.8E-05 2E-09 60.6 5.1 91 316-407 3-97 (117)
191 3rkv_A Putative peptidylprolyl 97.6 0.00019 6.5E-09 61.3 8.3 67 339-405 63-131 (162)
192 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00064 2.2E-08 69.1 13.1 122 165-287 267-404 (457)
193 2hr2_A Hypothetical protein; a 97.5 0.00019 6.7E-09 60.2 7.6 68 341-408 59-139 (159)
194 3ma5_A Tetratricopeptide repea 97.5 0.00045 1.5E-08 53.5 8.8 64 370-433 6-69 (100)
195 2kat_A Uncharacterized protein 97.5 0.00031 1E-08 55.9 8.0 77 357-433 3-81 (115)
196 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00035 1.2E-08 67.9 9.8 150 236-405 179-333 (338)
197 1na3_A Designed protein CTPR2; 97.4 0.00073 2.5E-08 50.7 9.1 81 339-419 9-91 (91)
198 1ihg_A Cyclophilin 40; ppiase 97.3 0.0026 8.9E-08 62.5 13.0 60 237-296 274-335 (370)
199 3n71_A Histone lysine methyltr 97.2 0.00077 2.6E-08 68.6 9.3 62 270-331 395-463 (490)
200 1klx_A Cysteine rich protein B 97.2 0.005 1.7E-07 50.8 12.4 106 216-329 10-123 (138)
201 1klx_A Cysteine rich protein B 97.2 0.008 2.7E-07 49.5 13.3 112 180-299 9-128 (138)
202 3qwp_A SET and MYND domain-con 97.2 0.0014 4.8E-08 65.7 10.1 116 346-479 294-427 (429)
203 3bee_A Putative YFRE protein; 97.2 0.0029 9.9E-08 48.0 9.5 68 369-436 4-74 (93)
204 2l6j_A TPR repeat-containing p 97.1 0.0017 5.9E-08 50.7 8.1 67 369-435 2-68 (111)
205 1zu2_A Mitochondrial import re 97.1 0.00028 9.5E-09 59.2 3.3 85 351-435 14-121 (158)
206 3qww_A SET and MYND domain-con 97.1 0.0014 4.7E-08 65.7 8.9 83 351-433 310-410 (433)
207 3qww_A SET and MYND domain-con 97.0 0.0043 1.5E-07 62.0 11.3 93 315-407 310-423 (433)
208 3qwp_A SET and MYND domain-con 96.9 0.0074 2.5E-07 60.4 12.7 100 309-408 293-413 (429)
209 1zu2_A Mitochondrial import re 96.9 0.0024 8.2E-08 53.5 7.4 97 213-312 14-133 (158)
210 1na3_A Designed protein CTPR2; 96.9 0.0034 1.2E-07 46.8 7.8 65 370-434 8-72 (91)
211 2kat_A Uncharacterized protein 96.8 0.0042 1.4E-07 49.1 8.3 61 235-295 18-80 (115)
212 1dce_A Protein (RAB geranylger 96.7 0.075 2.6E-06 55.3 19.1 128 182-313 45-188 (567)
213 1wy6_A Hypothetical protein ST 96.7 0.15 5.2E-06 40.5 17.9 141 278-437 17-157 (172)
214 3ma5_A Tetratricopeptide repea 96.7 0.0088 3E-07 45.9 9.0 61 235-295 6-68 (100)
215 3ly7_A Transcriptional activat 96.6 0.074 2.5E-06 51.1 16.3 67 338-404 276-343 (372)
216 3mkq_A Coatomer beta'-subunit; 96.3 0.13 4.6E-06 56.0 18.7 102 143-261 660-761 (814)
217 2kc7_A BFR218_protein; tetratr 96.2 0.024 8.1E-07 43.0 8.5 64 345-408 6-72 (99)
218 2kc7_A BFR218_protein; tetratr 96.1 0.013 4.4E-07 44.6 6.8 59 377-435 6-65 (99)
219 3mkq_A Coatomer beta'-subunit; 96.1 0.12 4E-06 56.4 16.8 102 245-365 661-762 (814)
220 3mkq_B Coatomer subunit alpha; 95.9 0.59 2E-05 39.6 16.1 102 143-261 13-114 (177)
221 3ly7_A Transcriptional activat 95.5 0.32 1.1E-05 46.7 14.8 73 265-342 274-346 (372)
222 1pc2_A Mitochondria fission pr 95.4 0.098 3.3E-06 43.2 9.5 65 369-433 30-99 (152)
223 2v5f_A Prolyl 4-hydroxylase su 95.2 0.11 3.8E-06 40.0 8.8 71 340-410 6-85 (104)
224 3bee_A Putative YFRE protein; 94.9 0.13 4.3E-06 38.7 8.2 69 337-405 4-77 (93)
225 3u64_A Protein TP_0956; tetrat 94.8 0.1 3.5E-06 48.1 8.7 86 355-440 179-275 (301)
226 1qsa_A Protein (soluble lytic 94.0 6.9 0.00024 40.7 27.2 251 137-399 74-347 (618)
227 2wpv_A GET4, UPF0363 protein Y 93.6 4.8 0.00016 37.7 19.0 168 239-433 36-216 (312)
228 1pc2_A Mitochondria fission pr 93.6 0.3 1E-05 40.2 8.3 71 337-407 30-107 (152)
229 3lvg_A Clathrin heavy chain 1; 93.2 4.2E-05 1.4E-09 74.8 -17.8 222 134-384 53-276 (624)
230 3lpz_A GET4 (YOR164C homolog); 92.4 7.4 0.00025 36.7 21.4 167 239-433 38-215 (336)
231 2v5f_A Prolyl 4-hydroxylase su 92.0 0.67 2.3E-05 35.4 8.0 65 370-434 4-75 (104)
232 1wy6_A Hypothetical protein ST 91.7 2.4 8.3E-05 33.8 10.5 85 147-233 73-157 (172)
233 4h7y_A Dual specificity protei 91.5 2.6 9E-05 34.4 10.9 115 262-407 7-130 (161)
234 3mkq_B Coatomer subunit alpha; 91.4 5.9 0.0002 33.4 15.7 130 244-398 13-142 (177)
235 3u64_A Protein TP_0956; tetrat 90.9 0.95 3.2E-05 41.7 8.9 88 216-305 178-279 (301)
236 3lvg_A Clathrin heavy chain 1; 90.5 0.00087 3E-08 65.8 -12.1 259 32-328 53-316 (624)
237 2ff4_A Probable regulatory pro 90.3 0.65 2.2E-05 45.5 7.9 68 374-441 174-246 (388)
238 4gns_B Protein CSD3, chitin bi 90.2 3.1 0.00011 44.2 13.3 54 379-432 345-398 (754)
239 1nzn_A CGI-135 protein, fissio 90.2 1.8 6.1E-05 34.3 8.7 88 317-406 15-109 (126)
240 1v54_E Cytochrome C oxidase po 88.7 3 0.0001 31.3 8.3 63 283-347 25-87 (109)
241 1nzn_A CGI-135 protein, fissio 88.0 4.6 0.00016 31.9 9.7 90 278-370 11-106 (126)
242 3lpz_A GET4 (YOR164C homolog); 87.6 19 0.00064 33.9 21.5 168 137-331 37-215 (336)
243 4fhn_B Nucleoporin NUP120; pro 86.9 14 0.00049 41.7 16.9 164 140-321 817-989 (1139)
244 4h7y_A Dual specificity protei 86.4 1.7 5.7E-05 35.5 6.3 55 383-437 72-126 (161)
245 2wpv_A GET4, UPF0363 protein Y 84.5 26 0.0009 32.6 21.0 169 137-332 35-217 (312)
246 1y8m_A FIS1; mitochondria, unk 84.4 15 0.0005 29.7 13.9 67 368-434 36-106 (144)
247 1v54_E Cytochrome C oxidase po 82.6 8.9 0.0003 28.8 8.2 62 182-244 26-87 (109)
248 2y69_E Cytochrome C oxidase su 82.5 7.7 0.00026 30.8 8.3 60 286-347 71-130 (152)
249 2qx5_A Nucleoporin NIC96; mRNA 82.5 20 0.00068 37.4 14.1 44 33-77 153-199 (661)
250 2p58_C Putative type III secre 81.9 14 0.00048 27.6 9.0 86 115-205 22-107 (116)
251 2uwj_G Type III export protein 81.4 13 0.00045 27.7 8.6 86 115-205 21-106 (115)
252 4gns_B Protein CSD3, chitin bi 81.2 5.7 0.00019 42.2 9.6 51 368-419 610-660 (754)
253 2ff4_A Probable regulatory pro 80.0 9 0.00031 37.3 10.1 52 310-363 178-229 (388)
254 4fhn_B Nucleoporin NUP120; pro 79.7 14 0.00048 41.8 12.9 124 308-437 817-970 (1139)
255 4b4t_P 26S proteasome regulato 77.7 58 0.002 32.2 17.5 183 180-365 30-244 (445)
256 3o48_A Mitochondria fission 1 76.0 20 0.00068 28.5 9.0 44 389-432 61-105 (134)
257 2zu6_B Programmed cell death p 74.5 55 0.0019 30.4 15.4 220 36-261 6-266 (307)
258 3ffl_A Anaphase-promoting comp 74.4 16 0.00056 30.3 8.5 23 344-366 127-149 (167)
259 1wdy_A 2-5A-dependent ribonucl 73.5 38 0.0013 30.3 12.3 116 37-163 6-130 (285)
260 2y69_E Cytochrome C oxidase su 73.3 20 0.0007 28.4 8.2 60 184-244 71-130 (152)
261 1zbp_A Hypothetical protein VP 71.4 6.8 0.00023 35.5 6.0 57 348-404 6-64 (273)
262 3txn_A 26S proteasome regulato 69.8 83 0.0028 30.4 15.2 163 202-364 20-206 (394)
263 2uwj_G Type III export protein 69.5 32 0.0011 25.6 10.2 88 214-307 19-106 (115)
264 2p58_C Putative type III secre 68.5 34 0.0012 25.5 10.8 88 214-307 20-107 (116)
265 3mv2_A Coatomer subunit alpha; 67.9 48 0.0017 30.8 11.0 59 362-434 196-256 (325)
266 1zbp_A Hypothetical protein VP 67.8 53 0.0018 29.7 11.0 119 277-406 6-135 (273)
267 1wdy_A 2-5A-dependent ribonucl 64.5 28 0.00096 31.3 9.2 19 142-160 9-27 (285)
268 4b4t_P 26S proteasome regulato 63.6 1.2E+02 0.004 29.9 20.9 173 149-326 30-241 (445)
269 2nsz_A Programmed cell death p 62.3 56 0.0019 25.7 9.5 66 138-203 10-80 (129)
270 3ffl_A Anaphase-promoting comp 62.2 63 0.0022 26.7 9.5 113 138-264 23-149 (167)
271 3esl_A Checkpoint serine/threo 59.4 81 0.0028 27.1 10.0 101 357-483 62-168 (202)
272 3ltj_A Alpharep-4; protein eng 58.2 83 0.0029 26.5 17.4 111 132-250 87-197 (201)
273 4b4t_R RPN7, 26S proteasome re 56.4 63 0.0022 31.7 10.5 58 341-398 133-195 (429)
274 4b4t_R RPN7, 26S proteasome re 56.2 1E+02 0.0036 30.1 12.0 96 270-365 133-234 (429)
275 2ion_A PDCD4, programmed cell 55.9 51 0.0017 26.9 8.1 66 138-203 12-82 (152)
276 3kea_A K1L; tropism, ANK repea 53.1 67 0.0023 29.1 9.6 19 40-58 35-53 (285)
277 1k1a_A B-cell lymphoma 3-encod 51.4 1.2E+02 0.004 26.1 11.2 52 108-160 15-68 (241)
278 1n11_A Ankyrin; clathrin, BAND 49.3 1E+02 0.0035 29.8 10.9 21 39-59 17-37 (437)
279 3eiq_C Programmed cell death p 48.7 1.8E+02 0.0062 27.5 18.5 222 35-261 56-317 (358)
280 4ady_A RPN2, 26S proteasome re 48.7 3E+02 0.01 30.0 24.1 249 145-398 384-656 (963)
281 1k1a_A B-cell lymphoma 3-encod 47.0 74 0.0025 27.5 8.7 21 177-197 17-37 (241)
282 1n11_A Ankyrin; clathrin, BAND 44.9 2E+02 0.0068 27.7 12.3 171 243-427 150-330 (437)
283 4ady_A RPN2, 26S proteasome re 44.9 3.4E+02 0.012 29.6 27.1 292 137-433 341-657 (963)
284 1y8m_A FIS1; mitochondria, unk 44.2 1.2E+02 0.0042 24.3 11.0 35 372-406 78-112 (144)
285 3hra_A Ankyrin repeat family p 43.5 86 0.0029 26.2 8.3 49 41-91 10-62 (201)
286 2nsz_A Programmed cell death p 43.0 88 0.003 24.6 7.4 71 169-240 10-82 (129)
287 2pk8_A Uncharacterized protein 42.3 41 0.0014 24.4 4.5 49 461-517 12-60 (103)
288 2d2s_A Exocyst complex compone 41.9 1.1E+02 0.0038 27.0 8.6 87 172-261 24-116 (235)
289 4gq2_M Nucleoporin NUP120; bet 41.9 2E+02 0.0067 31.7 12.4 91 309-405 816-932 (950)
290 3kea_A K1L; tropism, ANK repea 41.2 87 0.003 28.4 8.3 117 314-440 103-223 (285)
291 3o48_A Mitochondria fission 1 40.7 1.3E+02 0.0046 23.7 9.8 36 371-406 78-113 (134)
292 3hra_A Ankyrin repeat family p 40.2 78 0.0027 26.4 7.4 16 146-161 13-28 (201)
293 2ion_A PDCD4, programmed cell 40.0 97 0.0033 25.2 7.3 69 169-238 12-82 (152)
294 3ltm_A Alpha-REP4; protein eng 38.3 1.8E+02 0.0061 24.5 20.4 80 133-216 31-110 (211)
295 4a1g_A Mitotic checkpoint seri 37.8 1.6E+02 0.0056 23.9 9.0 49 389-437 83-133 (152)
296 2l0z_A Glycoprotein G2; zinc-b 37.3 11 0.00037 22.5 0.8 18 557-574 11-29 (42)
297 3b7b_A Euchromatic histone-lys 36.4 1.3E+02 0.0045 25.8 8.5 201 81-297 24-236 (237)
298 2k0q_A Putative uncharacterize 36.0 8.2 0.00028 26.3 0.2 23 551-573 8-30 (74)
299 3eu9_A Huntingtin-interacting 35.5 1.7E+02 0.0058 24.9 9.2 18 42-59 15-32 (240)
300 3ltj_A Alpharep-4; protein eng 34.5 2E+02 0.0069 23.9 21.2 141 134-283 27-167 (201)
301 1ug3_A EIF4GI, eukaryotic prot 34.1 79 0.0027 29.8 6.8 27 138-164 14-40 (339)
302 2wvi_A Mitotic checkpoint seri 33.4 2E+02 0.0069 23.6 9.2 50 389-438 78-129 (164)
303 3eu9_A Huntingtin-interacting 33.0 1.6E+02 0.0056 25.0 8.6 19 142-160 46-64 (240)
304 2rfa_A Transient receptor pote 32.3 2E+02 0.007 24.4 9.1 36 40-75 7-46 (232)
305 3ltm_A Alpha-REP4; protein eng 31.9 2.3E+02 0.0078 23.8 20.4 166 150-329 17-182 (211)
306 4a1g_A Mitotic checkpoint seri 30.8 64 0.0022 26.3 4.7 44 17-60 83-128 (152)
307 2d2s_A Exocyst complex compone 30.1 1.5E+02 0.0051 26.2 7.4 30 336-365 88-117 (235)
308 1ug3_A EIF4GI, eukaryotic prot 28.8 2.3E+02 0.008 26.5 9.1 56 36-91 14-76 (339)
309 3ygs_P Procaspase 9; apoptosis 28.5 83 0.0028 23.2 4.7 38 149-186 51-88 (97)
310 3l6a_A Eukaryotic translation 28.2 3.4E+02 0.012 25.7 10.2 28 138-165 15-42 (364)
311 4gq2_M Nucleoporin NUP120; bet 27.8 6.2E+02 0.021 27.7 13.5 128 141-282 816-950 (950)
312 2fe3_A Peroxide operon regulat 26.9 1.7E+02 0.0058 23.3 6.8 64 292-357 11-74 (145)
313 3aji_A 26S proteasome non-ATPa 26.8 2.7E+02 0.0092 23.6 8.9 51 39-91 9-63 (231)
314 3ljn_A Hypothetical protein; a 26.6 2.9E+02 0.0098 25.7 9.6 179 242-430 56-266 (364)
315 3ljn_A Hypothetical protein; a 26.5 2.4E+02 0.0081 26.3 9.0 50 142-192 57-107 (364)
316 3aji_A 26S proteasome non-ATPa 26.3 1.6E+02 0.0054 25.1 7.2 19 142-160 10-28 (231)
317 2xig_A Ferric uptake regulatio 25.6 2.3E+02 0.0078 22.7 7.3 62 293-356 17-78 (150)
318 3eiq_C Programmed cell death p 24.9 4.4E+02 0.015 24.9 15.6 66 271-338 220-287 (358)
319 3qye_A TBC1 domain family memb 24.5 4.1E+02 0.014 24.5 10.0 128 80-215 168-308 (331)
320 4b4t_S RPN3, 26S proteasome re 23.7 2E+02 0.007 28.8 7.8 59 303-365 231-296 (523)
321 2rfa_A Transient receptor pote 23.5 3.4E+02 0.011 23.0 10.3 21 279-299 162-182 (232)
322 3ygs_P Procaspase 9; apoptosis 23.1 1.1E+02 0.0038 22.5 4.5 38 250-288 51-88 (97)
323 4b4t_S RPN3, 26S proteasome re 23.1 5.8E+02 0.02 25.5 11.7 59 136-194 232-298 (523)
324 3txn_A 26S proteasome regulato 23.0 5.1E+02 0.017 24.8 26.4 88 336-436 253-345 (394)
325 2qx5_A Nucleoporin NIC96; mRNA 22.7 4.7E+02 0.016 27.2 10.6 32 339-370 533-569 (661)
326 4g8k_A 2-5A-dependent ribonucl 22.7 4.4E+02 0.015 24.0 12.7 265 19-302 38-328 (337)
327 1bd8_A P19INK4D CDK4/6 inhibit 22.6 2.5E+02 0.0087 21.8 7.3 114 38-160 4-123 (156)
328 3qye_A TBC1 domain family memb 22.5 3.8E+02 0.013 24.8 9.4 43 222-264 209-251 (331)
329 3i5p_A Nucleoporin NUP170; hel 22.2 6.1E+02 0.021 25.4 11.2 69 368-436 175-248 (525)
330 1qsa_A Protein (soluble lytic 21.9 6.6E+02 0.023 25.8 36.6 391 19-439 56-484 (618)
331 2yru_A Steroid receptor RNA ac 21.9 1.5E+02 0.0051 22.9 5.1 42 188-229 48-89 (118)
332 2fe3_A Peroxide operon regulat 21.9 2.9E+02 0.0099 21.9 7.3 30 174-203 29-58 (145)
333 2p1h_A APAF-1, apoptotic prote 21.6 2.3E+02 0.0079 20.4 6.1 66 119-188 24-89 (94)
334 2zu6_B Programmed cell death p 21.3 4.8E+02 0.016 23.9 13.5 59 271-330 169-229 (307)
335 1bd8_A P19INK4D CDK4/6 inhibit 21.0 2E+02 0.0069 22.5 6.3 15 246-260 108-122 (156)
336 4ets_A Ferric uptake regulatio 20.8 1.9E+02 0.0067 23.6 6.0 72 285-357 14-87 (162)
337 3l6a_A Eukaryotic translation 20.1 5.5E+02 0.019 24.2 17.1 57 35-91 14-78 (364)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-36 Score=320.27 Aligned_cols=416 Identities=11% Similarity=-0.027 Sum_probs=362.4
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccC--CCCChhhHHHHHHHHhcCch---HHHHHHH
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHI--PSPNIVSWTALISAHSNSPL---SLNIFLS 86 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~---a~~~~~~ 86 (575)
.++.+.|..++..+.+.. |+..++..+...|.+.|++++|..+|+++ ..++..+|+.++.+|.+.|+ |+++|++
T Consensus 97 ~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE 175 (597)
T ss_dssp TTCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCS
T ss_pred ccCchHHHHHHHHHHhhC-CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 455667788888887432 67788999999999999999999999998 47899999999999999999 9999985
Q ss_pred HhhCC------------CCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhH-----------------
Q 008183 87 MLRHP------------TLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFC----------------- 137 (575)
Q Consensus 87 m~~~~------------~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----------------- 137 (575)
+.... ..+.+++..+|+.+..++.+.| +++.|..+++.+.+.+.. +...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHH
T ss_pred cCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHH
Confidence 32211 0013456889999999999999 999999999999987632 3333
Q ss_pred ---------------------HHHHHHHHHhCCChHHHHHHHHhcCC--CCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 138 ---------------------GSALVHFYSRFRSPDNAKKVFDEIRE--RDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 138 ---------------------~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
|+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 23336677788999999999999987 7999999999999999999999999999987
Q ss_pred CCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHH
Q 008183 195 SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWN 272 (575)
Q Consensus 195 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 272 (575)
.+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|++++. +.+..+|+
T Consensus 334 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 411 (597)
T 2xpi_A 334 ID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411 (597)
T ss_dssp HC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 64 3367789999999999999999999999999764 66789999999999999999999999998543 56788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc
Q 008183 273 AMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA 352 (575)
Q Consensus 273 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 352 (575)
.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+++.... +.+..+|+.++..|.+.
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHh
Confidence 99999999999999999999999864 3478999999999999999999999999995432 33588999999999999
Q ss_pred CChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchH
Q 008183 353 GRLEDAERIAMAM-------PFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423 (575)
Q Consensus 353 g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 423 (575)
|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+|.++.+|..++.+|.+.|++++
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999988 45787 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 008183 424 VAEVRKVMKDRR 435 (575)
Q Consensus 424 a~~~~~~m~~~~ 435 (575)
|.+.++++.+..
T Consensus 569 A~~~~~~~l~~~ 580 (597)
T 2xpi_A 569 AITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999998753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.7e-35 Score=311.74 Aligned_cols=378 Identities=9% Similarity=-0.037 Sum_probs=318.5
Q ss_pred HHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHH
Q 008183 41 TNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFL 117 (575)
Q Consensus 41 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 117 (575)
..+.++|.+..+...|+.++.+++..|+.++.+|.+.|+ |+.+|++|.. ..||..++..+..+|...| +++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g-~~~ 134 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD-----ITGNPNDAFWLAQVYCCTG-DYA 134 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHTT-CHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh-----hCCCchHHHHHHHHHHHcC-cHH
Confidence 446678889999999999999999999999999999998 9999999996 6789999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCC-------------------CcchHHHHHHHHHh
Q 008183 118 FGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRER-------------------DVVCYGAMIVGFAQ 178 (575)
Q Consensus 118 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~ 178 (575)
.|..+++.+... ++++.+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+
T Consensus 135 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 135 RAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 999999988653 678999999999999999999999999964433 47899999999999
Q ss_pred CCCchHHHHHHHHhHHCCCCcC-HHHH--------------------------------------HHHHHHHHhcccHHH
Q 008183 179 NSRLVDSLSVFADMRSSDVGST-MYCV--------------------------------------SGALRAAAELAAMEQ 219 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p~-~~t~--------------------------------------~~ll~~~~~~~~~~~ 219 (575)
.|++++|+++|++|.+.+ |+ ...+ ..++..|.+.|++++
T Consensus 213 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 999999999999998754 33 2222 222455667899999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
|.++++.+.+. +++..+++.++.+|.+.|++++|.++|++++. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 291 AEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 99999998876 68999999999999999999999999998553 557889999999999999999999999999865
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHH
Q 008183 298 GFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVW 374 (575)
Q Consensus 298 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 374 (575)
.+.+..++..++..|.+.|++++|.++|+++... .| +..+|+.++.+|.+.|++++|.++|+++ ...| +..+|
T Consensus 369 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 444 (597)
T 2xpi_A 369 -HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444 (597)
T ss_dssp -CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence 3457889999999999999999999999998542 44 4789999999999999999999999988 3344 78999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..++.+|.+.|++++|.++++++.+..|.++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999765
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.4e-29 Score=261.15 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=87.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHhCCCCchhHH
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA---------AMEQCRVIHGHAVVSGLDRNVIVG 239 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~g~~~~~~~~ 239 (575)
++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44444444444444444444444444444444444444444444322 234444444444444444444445
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
|+||.+|++.|++++|.++|++|.. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 5555555555555555444444211 3444455555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMG 350 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 350 (575)
|++++|.+++++| .+.+..|+..||+.++..|+
T Consensus 189 g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555 33345555555555554444
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.1e-29 Score=257.02 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=169.8
Q ss_pred HHHHHHHHhhCCCCCcCCCh-hhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 008183 80 SLNIFLSMLRHPTLSFLPNQ-RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF 158 (575)
Q Consensus 80 a~~~~~~m~~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 158 (575)
+..+++++.+.+ ..+.. ..++.+|.+|++.| +++.|.++++.|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~---~~~spe~~l~~~id~c~k~G-~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---- 80 (501)
T 4g26_A 9 SENLSRKAKKKA---IQQSPEALLKQKLDMCSKKG-DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---- 80 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSC-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----
T ss_pred HHHHHHHHHHhc---ccCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----
Confidence 455566666655 44332 34677777777777 7777777777777777777777777777777776654332
Q ss_pred HhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhH
Q 008183 159 DEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIV 238 (575)
Q Consensus 159 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 238 (575)
.+.+..++|+++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 23445788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 315 (575)
||+||.+|++.|++++|.++|++|.. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999444 789999999999999999999999999999999999999999999999876
Q ss_pred c
Q 008183 316 A 316 (575)
Q Consensus 316 ~ 316 (575)
.
T Consensus 223 ~ 223 (501)
T 4g26_A 223 E 223 (501)
T ss_dssp H
T ss_pred C
Confidence 4
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.5e-24 Score=218.95 Aligned_cols=370 Identities=14% Similarity=0.021 Sum_probs=295.4
Q ss_pred HHHhHcCCChHHHHHHHccCC--CC-ChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhch
Q 008183 40 ITNYSKSNLLSYSLRLFNHIP--SP-NIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113 (575)
Q Consensus 40 i~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~ 113 (575)
...+.+.|++++|.+.|+.+. .| +...+..+...+...|+ |...++...+. .+.+..+|..+...+...|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCC
Confidence 455677899999999887764 34 44455555566666666 88888887764 3457778888888888888
Q ss_pred hhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHH
Q 008183 114 HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFA 190 (575)
Q Consensus 114 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 190 (575)
+++.|...++.+++.. +.+...+..+...|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+
T Consensus 82 -~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 -QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp -CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999988865 44566788888999999999999999988754 4 44567778888888899999999999
Q ss_pred HhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCCh
Q 008183 191 DMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNS 268 (575)
Q Consensus 191 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~ 268 (575)
++.+.. +-+..++..+...+...|++++|...++.+++.. +.+...+..+...+...|++++|.+.|++++. +.+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence 887742 2346788888888899999999999999988875 45677888888899999999999999887444 4567
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISA 348 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 348 (575)
.+|+.+...|.+.|++++|++.|+++.+... .+..++..+..++.+.|++++|...++++... .+.+..++..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHH
Confidence 8888899999999999999999999887532 25677888888899999999999999888543 23457888889999
Q ss_pred HhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 349 MGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 349 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
+.+.|++++|...++++ ...| +..+|..+...+.+.|++++|...++++++..|.++.+|..+...+...|+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999887 4455 478888899999999999999999999999989888888888888776653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.1e-23 Score=212.42 Aligned_cols=347 Identities=12% Similarity=0.061 Sum_probs=299.1
Q ss_pred HhcCch---HHHHHHHHhhCCCCCcCCChh-hHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCC
Q 008183 74 HSNSPL---SLNIFLSMLRHPTLSFLPNQR-TLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFR 149 (575)
Q Consensus 74 ~~~~g~---a~~~~~~m~~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 149 (575)
+.+.|+ |++.|..+.+ ..|+.. .+..+...+...+ +++.+...+...++.. +.+..++..+...|.+.|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~~-~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWR-----QEPDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 444555 9999999887 446554 4444555566677 9999999999998875 667889999999999999
Q ss_pred ChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC-HHHHHHHHHHHHhcccHHHHHHHHH
Q 008183 150 SPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST-MYCVSGALRAAAELAAMEQCRVIHG 225 (575)
Q Consensus 150 ~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 225 (575)
++++|...|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998754 4 4567999999999999999999999999875 454 4466777888889999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 008183 226 HAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE 303 (575)
Q Consensus 226 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 303 (575)
.+++.. +.+..+++.+...|.+.|++++|.+.|++++. +.+...|..+...+...|++++|+..|++..... +.+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 999874 55678999999999999999999999998554 5567789999999999999999999999998763 2357
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PF-EPDAAVWRALLSF 380 (575)
Q Consensus 304 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 380 (575)
.++..+..++...|++++|...|+++.. ..|+ ..+|..+...|.+.|++++|.+.|+++ .. .++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 8899999999999999999999998853 3454 678999999999999999999999988 23 3468999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+...|++++|...++++++..|.+..++..++.+|.+.|++++|...++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999864
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.4e-21 Score=198.16 Aligned_cols=309 Identities=12% Similarity=0.019 Sum_probs=258.5
Q ss_pred CCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHH
Q 008183 96 LPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAM 172 (575)
Q Consensus 96 ~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~l 172 (575)
+.+...+..+...+.+.| +++.|..++..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+
T Consensus 23 p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAG-QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 446677788888888888 9999999999888764 45678888889999999999999999988754 356788889
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcCH----HHHHHH------------HHHHHhcccHHHHHHHHHHHHHhCCCCch
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTM----YCVSGA------------LRAAAELAAMEQCRVIHGHAVVSGLDRNV 236 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 236 (575)
...|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|++++|...+..+.+.. +.+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 99999999999999999998764 4543 344444 444788999999999999998875 5678
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHH----
Q 008183 237 IVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD-EYSFLAV---- 309 (575)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l---- 309 (575)
.++..+..+|.+.|++++|.+.|++++. +.+..+|+.+...|...|++++|+..|+++... .|+ ...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 8999999999999999999999998554 567889999999999999999999999999875 343 3444333
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHH
Q 008183 310 --------LTALCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVW 374 (575)
Q Consensus 310 --------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 374 (575)
..++.+.|++++|..+|+.+... .|+ ..+|..+...+.+.|++++|...++++ ...| +..+|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 78889999999999999998543 455 457889999999999999999999987 4455 68999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 375 RALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
..+..+|...|++++|...++++++..|.++.++..+..+
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999888888743
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.2e-20 Score=195.38 Aligned_cols=391 Identities=8% Similarity=-0.064 Sum_probs=311.7
Q ss_pred cHHHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHH
Q 008183 34 SIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKT 108 (575)
Q Consensus 34 ~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~ 108 (575)
..+..+-..|.+.|++++|...|+++. .|+...|..+...+.+.|+ |+..|+++.+.. +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK----PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----hHHHHHHHHHHHH
Confidence 345667788899999999999999885 5888999999999998888 999999998842 3456788888899
Q ss_pred HhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHH------------------------------
Q 008183 109 CASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVF------------------------------ 158 (575)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f------------------------------ 158 (575)
+...| +++.|...+..+.+.+. ++......++..+.+......+.+.+
T Consensus 83 ~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLG-KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTT-CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHh-hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999 99999999999988874 34444444444443322222222221
Q ss_pred --------HhcCC---------C-CcchHHHHHHHHHh---CCCchHHHHHHHHhHH-----CCCCc--------CHHHH
Q 008183 159 --------DEIRE---------R-DVVCYGAMIVGFAQ---NSRLVDSLSVFADMRS-----SDVGS--------TMYCV 204 (575)
Q Consensus 159 --------~~m~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~ 204 (575)
..... | +...|......+.. .|++++|+..|+++.+ ....| +..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 11100 1 13334444444444 8999999999999987 32122 34577
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcC
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQG 282 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g 282 (575)
..+...+...|++++|...+..+.+... +...+..+...|...|++++|.+.|+.++. +.+...|..+...|...|
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 7888889999999999999999998853 388899999999999999999999998555 457788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIA 362 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 362 (575)
++++|+..|++..+.... +..++..+...+...|++++|..+++.+.... +.+...+..+...|.+.|++++|...+
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999886433 56788889999999999999999999885432 234778899999999999999999999
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 363 MAM----PFEPD----AAVWRALLSFSAI---HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 363 ~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
+++ +..++ ..+|..+...+.. .|++++|...++++++..|.++.++..++.+|...|++++|...+++.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 887 22233 4589999999999 999999999999999999999999999999999999999999999998
Q ss_pred hhCC
Q 008183 432 KDRR 435 (575)
Q Consensus 432 ~~~~ 435 (575)
.+..
T Consensus 476 ~~~~ 479 (514)
T 2gw1_A 476 ADLA 479 (514)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8753
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.6e-20 Score=196.46 Aligned_cols=390 Identities=9% Similarity=-0.074 Sum_probs=308.4
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHH
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFL 85 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~ 85 (575)
.+....|...+..+++.. |++..+..+...|.+.|++++|.+.|+++. +.+...|..+...+...|+ |+..|+
T Consensus 19 ~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 466778899999998876 688999999999999999999999999874 4566789999999999998 999999
Q ss_pred HHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhh-----------------------------------C
Q 008183 86 SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL-----------------------------------S 130 (575)
Q Consensus 86 ~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~-----------------------------------g 130 (575)
++...+ +++......++..+.... ....+.+.+..+... .
T Consensus 98 ~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 98 VLSLNG----DFNDASIEPMLERNLNKQ-AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHSS----SCCGGGTHHHHHHHHHHH-HHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHhcC----CCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 999864 345555555555554433 333332222111100 0
Q ss_pred C---------CCchhHHHHHHHHHHh---CCChHHHHHHHHhcCC----------------C-CcchHHHHHHHHHhCCC
Q 008183 131 L---------HDKPFCGSALVHFYSR---FRSPDNAKKVFDEIRE----------------R-DVVCYGAMIVGFAQNSR 181 (575)
Q Consensus 131 ~---------~~~~~~~~~li~~~~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~~li~~~~~~g~ 181 (575)
. +.+...+..+...+.. .|++++|...|+++.+ | +..+|..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 0 1113334444444443 8999999999988654 1 34578889999999999
Q ss_pred chHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
+++|+..|+++.+.. |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998864 447788899999999999999999999998764 55788899999999999999999999998
Q ss_pred hCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-
Q 008183 262 NLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG- 338 (575)
Q Consensus 262 ~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 338 (575)
++. +.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.....-.++
T Consensus 330 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 330 AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 543 5567889999999999999999999999998763 335678888999999999999999999988544322222
Q ss_pred ---hhHHHHHHHHHhc---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 339 ---LEHYTCLISAMGR---AGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 339 ---~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
...+..+...|.. .|++++|...|++. ...| +..+|..+...+...|++++|...++++.+..|.++..+..
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 3489999999999 99999999999887 3344 58889999999999999999999999999999988776655
Q ss_pred H
Q 008183 411 V 411 (575)
Q Consensus 411 l 411 (575)
+
T Consensus 489 ~ 489 (514)
T 2gw1_A 489 I 489 (514)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=7.1e-20 Score=188.25 Aligned_cols=345 Identities=9% Similarity=-0.027 Sum_probs=213.7
Q ss_pred hHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 008183 66 SWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALV 142 (575)
Q Consensus 66 ~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 142 (575)
.|..+...+.+.|+ |+.+|+++.+. .+.+..++..+..++...| +++.|...+..+++.+ +.+..++..+.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMG-KSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34444444444444 44444444442 1234455555555555555 6666666666665554 33455566666
Q ss_pred HHHHhCCChHHHHHHHHhcCCCC---c---chHHHH------------HHHHHhCCCchHHHHHHHHhHHCCCCcCHHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRERD---V---VCYGAM------------IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCV 204 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~~~---~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 204 (575)
..|.+.|++++|...|+.+.+.+ . ..|..+ ...+.+.|++++|+..|+++.+.. +.+..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 66666666666666666654421 1 344443 333667777777777777776532 2355666
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHH--------
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAM-------- 274 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l-------- 274 (575)
..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++++. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 777777777777777777777776653 45567777777777777777777777776433 3334444444
Q ss_pred ----HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 008183 275 ----MAGYAQQGDQSTVLELFHLLEMRGFAPD-----EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTC 344 (575)
Q Consensus 275 ----i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 344 (575)
...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++.+... .| +...|..
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~ 334 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 67788888888888888888774 333 346777777888888888888888877432 34 4677888
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHHcC-----ChHHHHHHHHH-HHhcCCCC
Q 008183 345 LISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSF------------SAIHG-----KADMASKMGKR-LIDINPYD 404 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~ 404 (575)
+..+|...|++++|...|++. .+.|+ ...+..+..+ |...| +.+++.+.+++ .++..|++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 888888888888888888776 55564 5556555533 22333 56677788876 55666653
Q ss_pred ch----------hHHHHHHHHHhCCCchH
Q 008183 405 DS----------AYVIVANVLSGVGRWDE 423 (575)
Q Consensus 405 ~~----------~~~~l~~~~~~~g~~~~ 423 (575)
.. .+..+..+|...|+.+.
T Consensus 415 ~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 415 FQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 21 34445555555555443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.3e-18 Score=183.13 Aligned_cols=389 Identities=11% Similarity=0.037 Sum_probs=271.9
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHH
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLF 106 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll 106 (575)
...+..+-..|.+.|++++|.+.|+++. +.+...|..+...|.+.|+ |++.|++..+.. +.+..++..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK----PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHH
Confidence 3445555666666666666666666553 3355566666666666655 666666666532 22445555555
Q ss_pred HHHhhchhhHHHHHHHHHHHHhhCCCCchh---------------------------------HHHHHHHHHHhCCChHH
Q 008183 107 KTCASLSHAFLFGLSLHSLSLKLSLHDKPF---------------------------------CGSALVHFYSRFRSPDN 153 (575)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---------------------------------~~~~li~~~~~~g~~~~ 153 (575)
..+...| +++.|...+. .+.....+... .....+..|....+.+.
T Consensus 101 ~~~~~~g-~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 101 SANESLG-NFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHHHT-CHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHHHcC-CHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 6666666 6666666664 22221111110 11122222333334444
Q ss_pred HHHHHHhcCCCCcc---hHHHHHHHHHhC--------CCchHHHHHHHHhHHCCCCcC--------HHHHHHHHHHHHhc
Q 008183 154 AKKVFDEIRERDVV---CYGAMIVGFAQN--------SRLVDSLSVFADMRSSDVGST--------MYCVSGALRAAAEL 214 (575)
Q Consensus 154 A~~~f~~m~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~ 214 (575)
+...+......+.. .+..+...+... |++++|+.+|+++.+. .|+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 44333333332222 233333322222 4789999999999764 343 23466666778888
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHH
Q 008183 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFH 292 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 292 (575)
|++++|...+..+.+.. |+...+..+...|...|++++|.+.|++++. +.+..+|..+...|...|++++|+..|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999874 5588899999999999999999999998554 5567889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC----C-
Q 008183 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM----P- 366 (575)
Q Consensus 293 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~- 366 (575)
+..+... .+..++..+...+...|++++|..++++.... .|+ ...+..+...|...|++++|...|+++ +
T Consensus 335 ~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9988643 24678888999999999999999999988544 344 678899999999999999999999886 1
Q ss_pred ---CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 367 ---FEPDAAVWRALLSFSAIH----------GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 367 ---~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.......+..+...+... |++++|...++++++..|.++.++..+..+|...|++++|...+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 112233455556677777 9999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 008183 434 RR 435 (575)
Q Consensus 434 ~~ 435 (575)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 53
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=3.1e-17 Score=162.56 Aligned_cols=309 Identities=12% Similarity=0.006 Sum_probs=225.4
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHH
Q 008183 99 QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVG 175 (575)
Q Consensus 99 ~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~ 175 (575)
...+..+-..+...| +++.|...+..+++.. +.++.++..+...|...|++++|...|+.+.+ | +...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAG-QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 345566666777778 8888888888888765 44667788888888888888888888887653 3 55678888888
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCc---C-HHHHHHH------------HHHHHhcccHHHHHHHHHHHHHhCCCCchhHH
Q 008183 176 FAQNSRLVDSLSVFADMRSSDVGS---T-MYCVSGA------------LRAAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239 (575)
Q Consensus 176 ~~~~g~~~~A~~~~~~m~~~g~~p---~-~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 239 (575)
|...|++++|+..|++..+. .| + ...+..+ ...+...|++++|...+..+.+.. +.+..++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 88888888888888888764 34 2 2333333 466777888888888888887764 5567778
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----------
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFL---------- 307 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---------- 307 (575)
..+...|.+.|++++|.+.+++++. +.+...|..+...|...|++++|...|++..+.... +..++.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 8888888888888888888887544 456777888888888888888888888888765322 222222
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 008183 308 --AVLTALCNAGLAGESEKWIERMKVRYKLEPGL-----EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALL 378 (575)
Q Consensus 308 --~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 378 (575)
.+...+...|++++|...++..... .|+. ..+..+...|...|++++|.+.+++. ...| +..+|..+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2245577788888888888877543 2432 23445667778888888888888776 3344 577788888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
..+...|++++|...++++++.+|.++.++..+..++.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 88888888888888888888888877777666655544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=4.1e-17 Score=161.74 Aligned_cols=295 Identities=11% Similarity=0.021 Sum_probs=247.5
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHH
Q 008183 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA 210 (575)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 210 (575)
++..+..+...+.+.|++++|...|+.+.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345677788899999999999999998754 367789999999999999999999999998753 2356788999999
Q ss_pred HHhcccHHHHHHHHHHHHHhCCC---CchhHHHHH------------HHHHHccCCHHHHHHHHhhhCC--CCChhhHHH
Q 008183 211 AAELAAMEQCRVIHGHAVVSGLD---RNVIVGTGL------------IDGYGKAGIVSDARRVFDENLS--VLNSIAWNA 273 (575)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 273 (575)
+...|++++|...+..+.+.. + .+...+..+ ...+...|++++|.+.|++++. +.+...|..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999998763 3 345555555 5889999999999999998544 567788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH---------
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYT--------- 343 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~--------- 343 (575)
+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|...++..... .|+ ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHH
Confidence 9999999999999999999998863 446788999999999999999999999988543 344 33332
Q ss_pred ---HHHHHHhccCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 344 ---CLISAMGRAGRLEDAERIAMAM-PFEPD-A----AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 344 ---~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
.+...+.+.|++++|...+++. ...|+ . ..+..+...+...|++++|...++++++..|.++.++..+..+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2366789999999999999887 33443 3 3355677889999999999999999999999999999999999
Q ss_pred HHhCCCchHHHHHHHHHhhC
Q 008183 415 LSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 415 ~~~~g~~~~a~~~~~~m~~~ 434 (575)
|...|++++|...+++..+.
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999998865
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.3e-17 Score=161.59 Aligned_cols=289 Identities=10% Similarity=0.006 Sum_probs=224.4
Q ss_pred CCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHH
Q 008183 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGA 207 (575)
Q Consensus 131 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 207 (575)
.+.++.++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 355666777778888888888888888888753 355567777788888888888888888887742 2345677777
Q ss_pred HHHHHhcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCCh
Q 008183 208 LRAAAELA-AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQ 284 (575)
Q Consensus 208 l~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 284 (575)
...+...| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|++++. +.+...|..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 78888888 8888888888887764 45577788888889999999999988887544 44567777788888899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-------CCCChhHHHHHHHHHhccCChHH
Q 008183 285 STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYK-------LEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 285 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
++|.+.|++..+.. +.+..++..+...+...|++++|...+++...... .......+..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999998888763 33567888888888899999999999887754321 12335788889999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhCCCch
Q 008183 358 AERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL-SGVGRWD 422 (575)
Q Consensus 358 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 422 (575)
|...+++. ...| +..+|..+...+...|++++|...++++++..|.++.++..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99998877 2334 5788888999999999999999999999999999988888888887 4555543
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.1e-17 Score=162.83 Aligned_cols=348 Identities=7% Similarity=0.043 Sum_probs=165.1
Q ss_pred cCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHH
Q 008183 45 KSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLS 121 (575)
Q Consensus 45 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~ 121 (575)
+.|++++|.+.+++++.|+ +|..|..++.+.|+ |++.|.+ .+|..+|..++.++...| .++++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik---------a~D~~~y~~V~~~ae~~g-~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK---------ADDPSSYMEVVQAANTSG-NWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc---------CCCHHHHHHHHHHHHhCC-CHHHHHH
Confidence 6789999999999997664 99999999999999 9999853 257779999999999999 9999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCH
Q 008183 122 LHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTM 201 (575)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 201 (575)
.+....+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 88888774 45578899999999999999999988864 77789999999999999999999999988
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHc
Q 008183 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ 281 (575)
Q Consensus 202 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 281 (575)
..|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|...... +. .+......++..|.+.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~-~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-VHADELEELINYYQDR 220 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT-TCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH-hCHhhHHHHHHHHHHC
Confidence 36999999999999999999999887 3789999999999999999999887776 43 3333344688999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCCC------ChhHHHHHHHHHhccC
Q 008183 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN--AGLAGESEKWIERMKVRYKLEP------GLEHYTCLISAMGRAG 353 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g 353 (575)
|++++|+.+++...... +-....|+-+--++++ .+++.+..+.|. .+-+++| +...|..++..|..-+
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999887543 3345556666555555 445555555554 4556666 5788999999999999
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHH-------------HHHHhCCC
Q 008183 354 RLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVA-------------NVLSGVGR 420 (575)
Q Consensus 354 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~-------------~~~~~~g~ 420 (575)
+++.|....-+-+ |+..--..+.....+..+.+.--+...-.++..| ...+.|+ ..+.+.|.
T Consensus 297 e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~~~ 371 (449)
T 1b89_A 297 EYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKVKQ 371 (449)
T ss_dssp CHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHcCC
Confidence 9999987654432 2222222233333444444444444333333333 2333344 44445555
Q ss_pred chHHHHHHHHHhhCC
Q 008183 421 WDEVAEVRKVMKDRR 435 (575)
Q Consensus 421 ~~~a~~~~~~m~~~~ 435 (575)
+.-+...++.+++.+
T Consensus 372 l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 372 LPLVKPYLRSVQNHN 386 (449)
T ss_dssp TTTTHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhh
Confidence 555555555444443
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=8.6e-17 Score=160.36 Aligned_cols=279 Identities=11% Similarity=0.001 Sum_probs=225.1
Q ss_pred HhCCChHHHHH-HHHhcCC-----C--CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccH
Q 008183 146 SRFRSPDNAKK-VFDEIRE-----R--DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAM 217 (575)
Q Consensus 146 ~~~g~~~~A~~-~f~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 217 (575)
.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 8886543 1 45678889999999999999999999998863 34667888899999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHH---------------HHHHHHH
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNA---------------MMAGYAQ 280 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~---------------li~~~~~ 280 (575)
++|...+..+++.. +.+..++..+...|...|++++|.+.|++++. +.+...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999999875 56788999999999999999999999998543 223333321 2334448
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHH
Q 008183 281 QGDQSTVLELFHLLEMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDA 358 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 358 (575)
.|++++|+..|+++.+..... +..++..+...+...|++++|...+++.... .|+ ...+..+...|.+.|++++|
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998864322 5888999999999999999999999988543 454 78899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhCCCchHHH
Q 008183 359 ERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD-----------DSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 359 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~ 425 (575)
...|++. ...| +..+|..+...+...|++++|...++++++..|.+ ..+|..+..+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999987 3345 58899999999999999999999999999988776 678999999999999999999
Q ss_pred HHHH
Q 008183 426 EVRK 429 (575)
Q Consensus 426 ~~~~ 429 (575)
.+++
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 8876
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=3.4e-16 Score=153.23 Aligned_cols=265 Identities=11% Similarity=0.054 Sum_probs=228.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 164 RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 164 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..++..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 467778889999999999999999999998753 2344566677788899999999999999999874 56788899999
Q ss_pred HHHHccC-CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008183 244 DGYGKAG-IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAG 320 (575)
Q Consensus 244 ~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 320 (575)
..|...| ++++|.+.|++++. +.+...|..+...|...|++++|+..|++..+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998654 456788999999999999999999999999887433 4566777888999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-C----------CCCCHHHHHHHHHHHHHcCChH
Q 008183 321 ESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-P----------FEPDAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 321 ~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~----------~~p~~~~~~~ll~~~~~~g~~~ 388 (575)
+|...+++... ..|+ ...+..+...|.+.|++++|...+++. . ...+..+|..+...+...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999998843 3454 788999999999999999999999877 1 1234679999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 389 MASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+|...++++++..|.++.++..+..+|...|++++|...+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999987653
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=2.7e-15 Score=157.60 Aligned_cols=399 Identities=8% Similarity=0.003 Sum_probs=288.0
Q ss_pred HHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcC
Q 008183 23 ARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFL 96 (575)
Q Consensus 23 ~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~ 96 (575)
...++..+.+...|..++. +.+.|++++|+.+|+++. +.+...|...+..+.+.|+ |..+|++... ..
T Consensus 3 e~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~-----~~ 76 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM-----KV 76 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----TC
T ss_pred hhHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC
Confidence 3444444467778999998 578999999999999875 3456679999999888887 9999999988 44
Q ss_pred CChhhHHHHHHHHh-hchhhHHHHH----HHHHHHHhh-CCCC-chhHHHHHHHHHHh---------CCChHHHHHHHHh
Q 008183 97 PNQRTLASLFKTCA-SLSHAFLFGL----SLHSLSLKL-SLHD-KPFCGSALVHFYSR---------FRSPDNAKKVFDE 160 (575)
Q Consensus 97 p~~~t~~~ll~~~~-~~~~~~~~a~----~~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~f~~ 160 (575)
|+...|...+.-.. ..| +.+.++ ++++..++. |..| +..+|...+....+ .|+++.|..+|+.
T Consensus 77 p~~~lw~~~~~~~~~~~~-~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKG-KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 77776666664332 334 555544 477776654 5443 56788888887765 6889999999998
Q ss_pred cCC-CCc---chHHHHHHHH-------------HhCCCchHHHHHHHHhH------HCC---CCcCH--------HHHHH
Q 008183 161 IRE-RDV---VCYGAMIVGF-------------AQNSRLVDSLSVFADMR------SSD---VGSTM--------YCVSG 206 (575)
Q Consensus 161 m~~-~~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~t~~~ 206 (575)
..+ |+. ..|....... .+.+++.+|..++.+.. +.. +.|+. ..|..
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 765 322 2333222210 12355677777776632 211 34442 34444
Q ss_pred HHHHHHhc----ccH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc-------cCCHH-------HHHHHHhhhCC
Q 008183 207 ALRAAAEL----AAM----EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK-------AGIVS-------DARRVFDENLS 264 (575)
Q Consensus 207 ll~~~~~~----~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~ 264 (575)
.+...... ++. +.+..+|++.+... +.+...|..+...+.+ .|+++ +|.++|++++.
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 44332221 222 36677888888763 5678888888888876 79987 89999998774
Q ss_pred ---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-
Q 008183 265 ---VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG- 338 (575)
Q Consensus 265 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 338 (575)
+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|++++|..+|++... ..|+
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~ 389 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTR 389 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCC
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCc
Confidence 346788999999999999999999999999984 454 25788888888889999999999998843 2343
Q ss_pred hhHHHHHHHH-HhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch----hHHHH
Q 008183 339 LEHYTCLISA-MGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS----AYVIV 411 (575)
Q Consensus 339 ~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l 411 (575)
...|...... +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+++++++..|.++. .|...
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3333332222 34689999999999976 3345 5889999999999999999999999999998766554 78888
Q ss_pred HHHHHhCCCchHHHHHHHHHhhC
Q 008183 412 ANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+......|+.+.+.++.+++.+.
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999988754
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=1.7e-16 Score=166.89 Aligned_cols=360 Identities=8% Similarity=-0.011 Sum_probs=275.2
Q ss_pred hhhHHHHHHHHhcCch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHH
Q 008183 64 IVSWTALISAHSNSPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140 (575)
Q Consensus 64 ~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 140 (575)
...|..+-..+.+.|+ |+..|+++.+.. +.+...+..+..++...| +++.|.+.+..+++.. +.+..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~ 98 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD----PNEPVFYSNISACYISTG-DLEKVIEFTTKALEIK-PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC----TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC-CchHHHHHH
Confidence 3456777777888888 999999999853 446778888888899999 9999999999999986 557788999
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC------CCCcCHHHHHH--------
Q 008183 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS------DVGSTMYCVSG-------- 206 (575)
Q Consensus 141 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~-------- 206 (575)
+...|.+.|++++|...|+.+. .+....+..+..+...+...+|++.++++... ...|+...+..
T Consensus 99 la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999999997543 23333333445555666677888888887542 12233322221
Q ss_pred ------------------HHHHHH------------hcccHHHHHHHHHHHHHhCCCCc-------hhHHHHHHHHHHcc
Q 008183 207 ------------------ALRAAA------------ELAAMEQCRVIHGHAVVSGLDRN-------VIVGTGLIDGYGKA 249 (575)
Q Consensus 207 ------------------ll~~~~------------~~~~~~~a~~~~~~~~~~g~~~~-------~~~~~~li~~~~~~ 249 (575)
+..++. ..+++++|..+++.+.+.. +.+ ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 111111 1257888999999888753 222 23567777889999
Q ss_pred CCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008183 250 GIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIER 328 (575)
Q Consensus 250 g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 328 (575)
|++++|.+.|+.++. .|+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++
T Consensus 257 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999998554 5667889999999999999999999999998864 33678899999999999999999999998
Q ss_pred HHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 329 MKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 329 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
.... .|+ ...+..+...|...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.+.
T Consensus 336 a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 336 AQSL---NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHH---CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 8543 344 678999999999999999999999887 3334 477899999999999999999999999998776554
Q ss_pred hh------HHHHHHHHHhC----------CCchHHHHHHHHHhhCC
Q 008183 406 SA------YVIVANVLSGV----------GRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 406 ~~------~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~ 435 (575)
.. +..+..+|... |++++|...+++..+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 43 34456778887 99999999999988653
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=5.5e-18 Score=166.93 Aligned_cols=250 Identities=11% Similarity=0.077 Sum_probs=116.9
Q ss_pred hCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 008183 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 226 (575)
+.|++++|.++++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7789999999999996654 9999999999999999999999753 6788999999999999999999998887
Q ss_pred HHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 008183 227 AVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306 (575)
Q Consensus 227 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 306 (575)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC----C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 7774 55688899999999999999998888764 67789999999999999999999999977 378
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGK 386 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 386 (575)
..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 89999999999999999999866 37899999999999999999997776665544543 4468899999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 008183 387 ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 387 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
+++|..+++..+.+++.....|..|.-+|++- +.++..+.++
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~ 264 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLE 264 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 99999999999999998889999999888877 3344444433
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.6e-16 Score=158.48 Aligned_cols=261 Identities=11% Similarity=-0.068 Sum_probs=213.0
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 55678899999999999999999999998753 3467788999999999999999999999998875 556888999999
Q ss_pred HHHccCCHHHHHHHHhhhCC-CC-C----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 008183 245 GYGKAGIVSDARRVFDENLS-VL-N----------SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDEYSFLAVLT 311 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~-~~-~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 311 (575)
.|.+.|++++|.+.|++++. .| + ...+..+...|...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999998544 11 1 223344578899999999999999999886432 26888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 388 (575)
.+...|++++|...+++.... .| +..+|..+...|.+.|++++|...|++. ...| +..+|..+...|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999988543 34 4789999999999999999999999987 3455 4889999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 389 MASKMGKRLIDINPY------------DDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
+|...++++++..|. +..+|..|..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999987765 356889999999999999988877653
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=5e-15 Score=142.31 Aligned_cols=267 Identities=10% Similarity=-0.027 Sum_probs=212.4
Q ss_pred HHhCCChHHHHHHHHhcCCCCc----chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHH
Q 008183 145 YSRFRSPDNAKKVFDEIRERDV----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220 (575)
Q Consensus 145 ~~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 220 (575)
....|++..|...++.....+. ...-.+.++|...|++++|+..++.. -.|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4467999999999988765432 34456788999999999999866542 356777888888899999999999
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 008183 221 RVIHGHAVVSGLDR-NVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF 299 (575)
Q Consensus 221 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 299 (575)
.+.++.++..+..| +...+..+...|...|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 99999998877544 566777788999999999999999998 5678889999999999999999999999998864
Q ss_pred CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHH
Q 008183 300 APDEYSF---LAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVW 374 (575)
Q Consensus 300 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 374 (575)
|+.... ...+..+...|++++|..+|+++... .+.+...++.+...+.+.|++++|...|++. ...| +..+|
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 553211 12333344568999999999999655 2446888999999999999999999999986 4456 58899
Q ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHH
Q 008183 375 RALLSFSAIHGKADM-ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 375 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
..++..+...|+.++ +.++++++.+.+|.++.+ .+...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 999999999999876 578999999999998754 344555555555443
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=5.7e-18 Score=179.48 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=133.0
Q ss_pred CCCchhHHHHHHHHHHhCCChHHHHHHHHhcC-------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHH
Q 008183 131 LHDKPFCGSALVHFYSRFRSPDNAKKVFDEIR-------ERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203 (575)
Q Consensus 131 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 203 (575)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34445789999999999999999999998764 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC-----CChhhHHHHHHH
Q 008183 204 VSGALRAAAELAA-MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV-----LNSIAWNAMMAG 277 (575)
Q Consensus 204 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~li~~ 277 (575)
|+++|.++++.|. .+.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++.+ +.. +.+.+.+.|...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~-f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT-FSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC-CCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc-cCCCCCCcccccchHHHHHH
Confidence 9999999999997 478999999999999999999999999988887666665555444 331 223444556666
Q ss_pred HHHcCC---------hHHHHHHHHHH
Q 008183 278 YAQQGD---------QSTVLELFHLL 294 (575)
Q Consensus 278 ~~~~g~---------~~~A~~l~~~m 294 (575)
|.+.+. .++-.++|++-
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHH
Confidence 666552 35555666543
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=5.5e-14 Score=146.04 Aligned_cols=363 Identities=10% Similarity=-0.029 Sum_probs=270.5
Q ss_pred CcccHHHHHHHHhHc----CCChHHHHHHHccCC-CCChhhHHHHHHHHhc----Cch---HHHHHHHHhhCCCCCcCCC
Q 008183 31 ADRSIYNNLITNYSK----SNLLSYSLRLFNHIP-SPNIVSWTALISAHSN----SPL---SLNIFLSMLRHPTLSFLPN 98 (575)
Q Consensus 31 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~----~g~---a~~~~~~m~~~~~~~~~p~ 98 (575)
.++..+..|-..|.. .+++++|...|++.. ..+...+..|-..|.. .++ |++.|++..+.+ +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG------L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------C
Confidence 356667777777777 789999999988654 3456667777666665 455 888888887755 4
Q ss_pred hhhHHHHHHHHhh----chhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHh----CCChHHHHHHHHhcCC-CCcchH
Q 008183 99 QRTLASLFKTCAS----LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSR----FRSPDNAKKVFDEIRE-RDVVCY 169 (575)
Q Consensus 99 ~~t~~~ll~~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~ 169 (575)
...+..+-..+.. .+ +.+.|...+....+.| ++..+..|-.+|.. .++.++|.+.|++..+ .+..++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKV-DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4555555556655 56 8888999988888876 45667777788877 7788999998887654 466778
Q ss_pred HHHHHHHHh----CCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCchhHHHH
Q 008183 170 GAMIVGFAQ----NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE----LAAMEQCRVIHGHAVVSGLDRNVIVGTG 241 (575)
Q Consensus 170 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 241 (575)
..+...|.+ .+++++|++.|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 888888887 788999999998887754 45566666666665 778889998888888765 4556677
Q ss_pred HHHHHHc----cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 242 LIDGYGK----AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ-----GDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 242 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
|..+|.. .++.++|.+.|+.+....+...+..+...|... +++++|+..|++..+.| +...+..+...
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI 337 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 7777777 788999999998866666777888888888877 88999999998888765 44566666666
Q ss_pred HHhcC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 008183 313 LCNAG---LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAMPFEPDAAVWRALLSFSAI-- 383 (575)
Q Consensus 313 ~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~-- 383 (575)
+...| +.++|.++|++.... .+...+..|...|.. .+++++|.++|++.--..+...+..|...|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 66655 778888888877432 356777788888877 78899999888887323467778888888887
Q ss_pred --cCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHH
Q 008183 384 --HGKADMASKMGKRLIDINPY---DDSAYVIVANVLS 416 (575)
Q Consensus 384 --~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 416 (575)
.++.++|...++++.+.+|. ++.+...|..++.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 78899999999998888843 5555554444433
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=5.6e-16 Score=154.46 Aligned_cols=277 Identities=13% Similarity=0.004 Sum_probs=204.0
Q ss_pred CChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHH-HHHHhHHCCC-Cc--CHHHHHHHHHHHHhcccHHHHHHHH
Q 008183 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLS-VFADMRSSDV-GS--TMYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 149 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
+.++.+...|+.+...+.. ++...|++++|++ .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555555555443322 2344588999998 8887654321 11 3456778889999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 008183 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 302 (575)
..+++.. +.+..++..+...|.+.|++++|.+.|++++. +.+..+|..+...|...|++++|++.|+++.......
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 165 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY- 165 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 9999875 66788999999999999999999999998554 5678899999999999999999999999998864321
Q ss_pred HHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-C
Q 008183 303 EYSFLA---------------VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-P 366 (575)
Q Consensus 303 ~~t~~~---------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 366 (575)
...+.. .+..+...|++++|..+++++.....-.++..++..+...|.+.|++++|...|++. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111111 234444889999999999998654322224788999999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 367 FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 367 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..| +..+|..+...+...|++++|...++++++..|.++.++..++.+|.+.|++++|...+++..+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345 58899999999999999999999999999999999999999999999999999999999988764
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=2.2e-13 Score=141.46 Aligned_cols=351 Identities=11% Similarity=-0.024 Sum_probs=290.5
Q ss_pred CCChhhHHHHHHHHhc----Cch---HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhh----chhhHHHHHHHHHHHHhh
Q 008183 61 SPNIVSWTALISAHSN----SPL---SLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS----LSHAFLFGLSLHSLSLKL 129 (575)
Q Consensus 61 ~~~~~~~~~li~~~~~----~g~---a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~~a~~~~~~~~~~ 129 (575)
..+..++..+-..|.. .++ |+..|++..+.+ +...+..+-..+.. .+ +.+.|...+....+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~ 108 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG------YTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALK 108 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC
Confidence 4466666666666665 455 999999998765 45566666666766 77 999999999999887
Q ss_pred CCCCchhHHHHHHHHHHh----CCChHHHHHHHHhcCCC-CcchHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCcC
Q 008183 130 SLHDKPFCGSALVHFYSR----FRSPDNAKKVFDEIRER-DVVCYGAMIVGFAQ----NSRLVDSLSVFADMRSSDVGST 200 (575)
Q Consensus 130 g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 200 (575)
| ++..+..|-.+|.. .+++++|...|+...+. +..++..|...|.. .+++++|++.|++..+.| +
T Consensus 109 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 109 G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 6 56777788889988 88999999999987654 66788888888887 889999999999998864 6
Q ss_pred HHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHhhhCCCCChhhHH
Q 008183 201 MYCVSGALRAAAE----LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK----AGIVSDARRVFDENLSVLNSIAWN 272 (575)
Q Consensus 201 ~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 272 (575)
...+..+...+.. .++.++|...+....+.| +...+..+..+|.. .+++++|.+.|++.....+...+.
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 259 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQF 259 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 6777788888877 899999999999999876 56778888888886 889999999999977777888888
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCCCChhHHH
Q 008183 273 AMMAGYAQ----QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA-----GLAGESEKWIERMKVRYKLEPGLEHYT 343 (575)
Q Consensus 273 ~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~ 343 (575)
.+...|.. .+++++|+..|++..+.| +...+..+...+... ++.++|..++++.. +. .+...+.
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~---~~~~a~~ 332 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQ---GDATAQA 332 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HT---TCHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hc---CCHHHHH
Confidence 88888888 899999999999998765 455666777777776 89999999999884 32 2456777
Q ss_pred HHHHHHhccC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 344 CLISAMGRAG---RLEDAERIAMAMPFEPDAAVWRALLSFSAI----HGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 344 ~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
.|...|.+.| ++++|.++|++.-...++..+..|...|.. .+++++|...+++..+.+ ++.++..|..+|.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 8888887766 789999999887323578899999999998 899999999999998875 5678899999999
Q ss_pred h----CCCchHHHHHHHHHhhCCC
Q 008183 417 G----VGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 417 ~----~g~~~~a~~~~~~m~~~~~ 436 (575)
. .+++++|...|++..+.+.
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8 8999999999999988764
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=176.77 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=105.5
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhC------CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENL------SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSF 306 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 306 (575)
..-..+||+||++||++|++++|.++|++|- ..||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345688899999999999999998886621 2688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 307 LAVLTALCNAGL-AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 307 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
+++|.++++.|+ .++|.++|++| .+.|+.||..+|++++....+.+-++.+.++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM-~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH-HHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH-HHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999998888887 47888889988 55688999999998887777765555554443333
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=2.5e-15 Score=146.82 Aligned_cols=260 Identities=12% Similarity=-0.017 Sum_probs=192.6
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 245 (575)
...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445556666666677777777776665532 2245556666666666777777777777666653 4456666777777
Q ss_pred HHccCCHHHHHHHHhhhCC--CCChhhHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 008183 246 YGKAGIVSDARRVFDENLS--VLNSIAWNAM--------------MA-GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLA 308 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 308 (575)
|...|++++|.+.|++++. +.+...+..+ .. .+...|++++|...++++.+.. +.+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 7777777777777766332 2222333332 22 3677888999999999988764 336788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHG 385 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 385 (575)
+...+...|++++|..++++.... .| +...+..+...|...|++++|...|++. ...| +..+|..+...+...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999988543 34 4778899999999999999999999887 3344 5888999999999999
Q ss_pred ChHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 386 KADMASKMGKRLIDINPY------------DDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
++++|...++++++..|. +..++..+..+|...|++++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999998888 6778999999999999999999987643
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=5.5e-15 Score=147.24 Aligned_cols=226 Identities=11% Similarity=0.007 Sum_probs=142.6
Q ss_pred ChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHH
Q 008183 98 NQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIV 174 (575)
Q Consensus 98 ~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 174 (575)
+...+......+.+.| +++.|...++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEG-DLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4455777788888888 8899999998888875 45677888888888888888888888887653 35678888888
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCcCHH-----------HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--chhHHHH
Q 008183 175 GFAQNSRLVDSLSVFADMRSSDVGSTMY-----------CVSGALRAAAELAAMEQCRVIHGHAVVSGLDR--NVIVGTG 241 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ 241 (575)
.|.+.|++++|+..|+++.+. .|+.. .+..+...+...|++++|...+..+++.. +. +..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHH
Confidence 888888888888888888763 23321 12223455556666666666666666553 22 4555566
Q ss_pred HHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008183 242 LIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 319 (575)
+...|.+.|++++|.+.|++++. +.+..+|+.+...|.+.|++++|+..|++..+.. +.+..++..+..++...|++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 66666666666666666655332 3344555555555555666666665555555432 12344555555555555555
Q ss_pred HHHHHHHHHH
Q 008183 320 GESEKWIERM 329 (575)
Q Consensus 320 ~~a~~~~~~m 329 (575)
++|...|++.
T Consensus 298 ~~A~~~~~~a 307 (365)
T 4eqf_A 298 REAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=6.2e-15 Score=141.69 Aligned_cols=248 Identities=10% Similarity=0.026 Sum_probs=203.2
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcCH--HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGSTM--YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
|+-....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4456678999999999988644 34554 3556678999999999999875543 23667888899999999999
Q ss_pred CHHHHHHHHhhhCC---CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008183 251 IVSDARRVFDENLS---VL-NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 251 ~~~~A~~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
+.++|.+.+++++. .| +...+..+...|.+.|++++|++.|++ +.+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998543 24 556677778899999999999999987 467788989999999999999999999
Q ss_pred HHHHHhcCCCCChhH---HHHHHHHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 327 ERMKVRYKLEPGLEH---YTCLISAMGRAGRLEDAERIAMAM-P-FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 327 ~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
+.+... .|+... ..+++..+...|++++|..+|+++ . ...+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999544 466422 223445555679999999999998 2 23468999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhCCCchH-HHHHHHHHhhCC
Q 008183 402 PYDDSAYVIVANVLSGVGRWDE-VAEVRKVMKDRR 435 (575)
Q Consensus 402 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 435 (575)
|.++.++..++..+...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578988887643
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=3.2e-14 Score=138.85 Aligned_cols=225 Identities=11% Similarity=0.020 Sum_probs=125.1
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHH
Q 008183 99 QRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVG 175 (575)
Q Consensus 99 ~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 175 (575)
...+......+...| +++.|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 21 ~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLA-NLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 344555566666677 7777777777777654 34556666777777777777777777776543 245567777777
Q ss_pred HHhCCCchHHHHHHHHhHHCCCCcCHH-HHHHH--------------HH-HHHhcccHHHHHHHHHHHHHhCCCCchhHH
Q 008183 176 FAQNSRLVDSLSVFADMRSSDVGSTMY-CVSGA--------------LR-AAAELAAMEQCRVIHGHAVVSGLDRNVIVG 239 (575)
Q Consensus 176 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 239 (575)
|...|++++|++.|+++.... |+.. .+..+ .. .+...|++++|...+..+.+.. +.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 777777777777777776542 2221 11111 11 1444555555555555555543 3344555
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 317 (575)
..+...|.+.|++++|.+.|++++. +.+..+|..+...|...|++++|...|++..+.. +.+..++..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 5555555555555555555554322 2334445555555555555555555555554432 123444444555555555
Q ss_pred CHHHHHHHHHHH
Q 008183 318 LAGESEKWIERM 329 (575)
Q Consensus 318 ~~~~a~~~~~~m 329 (575)
++++|...+++.
T Consensus 255 ~~~~A~~~~~~a 266 (327)
T 3cv0_A 255 QYDLAAKQLVRA 266 (327)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 555555555444
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=7.2e-13 Score=145.16 Aligned_cols=350 Identities=10% Similarity=0.054 Sum_probs=276.6
Q ss_pred HHHHHHHHHhhCC---CcccHHHHHHHHhHcCCChHHHHHHHccCC-CC-----ChhhHHHHHHHHhcCch--HHHHHHH
Q 008183 18 PRIVHARALKSSQ---ADRSIYNNLITNYSKSNLLSYSLRLFNHIP-SP-----NIVSWTALISAHSNSPL--SLNIFLS 86 (575)
Q Consensus 18 ~~~~~~~~~~~g~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~-----~~~~~~~li~~~~~~g~--a~~~~~~ 86 (575)
=+++.++.....+ .++.--...++.|...|.+.+|.++++++. .| +...-|.++.+..+... ..+...+
T Consensus 967 RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~k 1046 (1630)
T 1xi4_A 967 RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINR 1046 (1630)
T ss_pred HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 3456666555554 455556777999999999999999999885 33 33556777777666533 5555555
Q ss_pred HhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCc
Q 008183 87 MLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDV 166 (575)
Q Consensus 87 m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 166 (575)
... ....-+-..|...| .+++|..+++... ......+.++ -..|++++|.++.++.. +.
T Consensus 1047 Ld~----------~d~~eIA~Iai~lg-lyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p 1105 (1630)
T 1xi4_A 1047 LDN----------YDAPDIANIAISNE-LFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EP 1105 (1630)
T ss_pred hhh----------ccHHHHHHHHHhCC-CHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CH
Confidence 442 11333666777888 9999999999852 1122223333 37889999999998774 56
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY 246 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 246 (575)
.+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|+++++.+++....+.. +++.+.+.++.+|
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 78999999999999999999999664 567788899999999999999999999888764 5555566799999
Q ss_pred HccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008183 247 GKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 247 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
++.+++++.... +..++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+
T Consensus 1178 AKl~rleele~f----I~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1178 AKTNRLAELEEF----INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HhhcCHHHHHHH----HhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999964444 34567778888999999999999999999984 48999999999999999999998
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 327 ERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 327 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
++. .+..+|..+..+|...|++..|...... +..++..+..++.-|...|.+++|..+++..+.++|.+..
T Consensus 1245 rKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1245 RKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred HHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 855 4568899999999999999999988765 3455666778999999999999999999999999988888
Q ss_pred hHHHHHHHHHhC
Q 008183 407 AYVIVANVLSGV 418 (575)
Q Consensus 407 ~~~~l~~~~~~~ 418 (575)
.|.-|..+|++.
T Consensus 1316 mftELaiLyaKy 1327 (1630)
T 1xi4_A 1316 MFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHHhC
Confidence 898888888775
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.5e-13 Score=141.98 Aligned_cols=373 Identities=9% Similarity=-0.060 Sum_probs=209.0
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCC-ChhhHHHHHHHHhh
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLP-NQRTLASLFKTCAS 111 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p-~~~t~~~ll~~~~~ 111 (575)
...||.|-..|...|+.++|.+.|++. ++++....... ..| ...+|+.+-..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kA---------------------l~~~~~~~~~~---~~~~~~~~~~nla~~y~~ 106 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKA---------------------EELIQQEHADQ---AEIRSLVTWGNYAWVYYH 106 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHHSGGG---CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------HHHHHhcCccc---cchHHHHHHHHHHHHHHH
Confidence 445666666666666666666665442 22222221111 122 33466666666667
Q ss_pred chhhHHHHHHHHHHHHhhC------C-CCchhHHHHHHHHHHh--CCChHHHHHHHHhcCC--C-CcchHHHHHHH---H
Q 008183 112 LSHAFLFGLSLHSLSLKLS------L-HDKPFCGSALVHFYSR--FRSPDNAKKVFDEIRE--R-DVVCYGAMIVG---F 176 (575)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~g------~-~~~~~~~~~li~~~~~--~g~~~~A~~~f~~m~~--~-~~~~~~~li~~---~ 176 (575)
.| +++.|...++.+.+.. . .....+++.+..++.+ .+++++|...|++..+ | +...+..+... +
T Consensus 107 ~g-~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 107 MG-RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cC-ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 77 7777776666665431 0 1122344444333433 3457777777776543 3 33344443333 3
Q ss_pred HhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH
Q 008183 177 AQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE----LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV 252 (575)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 252 (575)
...++.++|++.|++..+.. +.+..++..+...+.. .++.++|.+.++...... +.+..++..+...|.+.|++
T Consensus 186 ~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCH
T ss_pred cCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCch
Confidence 44566777777777766532 2233444444444433 356667777777776664 45566777777788888888
Q ss_pred HHHHHHHhhhCC--CCChhhHHHHHHHHHH-------------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 253 SDARRVFDENLS--VLNSIAWNAMMAGYAQ-------------------QGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 253 ~~A~~~~~~~~~--~~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
++|.+.|++++. +.+..+|..+...|.. .+..++|...|++..+.. +.+..++..+..
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 888887776443 3445556655555432 223567777787776653 224456677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChh----HHHHHHH-HHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLE----HYTCLIS-AMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHG 385 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g 385 (575)
.+...|++++|...|++... +.|+.. .+..+.. .+...|+.++|...|++. .+.|+...+...
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~-------- 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM-------- 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH--------
T ss_pred HHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH--------
Confidence 88999999999999987743 233321 2233332 234678999999988876 556664433222
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEE
Q 008183 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWI 445 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 445 (575)
...+.+++++.++.+|.++.+|..|..+|...|++++|.+.+++..+.+-......+|+
T Consensus 412 -~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 -KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456777888889999999999999999999999999999999887665443444564
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=1.2e-12 Score=137.21 Aligned_cols=383 Identities=11% Similarity=0.035 Sum_probs=275.5
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHHH-hcCch---HH----
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAH-SNSPL---SL---- 81 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~-~~~g~---a~---- 81 (575)
.++.+.++.++.++++.-+.+...|..++..+.+.|++++|..+|++.. .|++..|...+.-. ...|+ |.
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 4677889999999988765778899999999999999999999999875 47877887776532 22333 44
Q ss_pred HHHHHHhhC-CCCCcCC-ChhhHHHHHHHHhh---------chhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHH-----
Q 008183 82 NIFLSMLRH-PTLSFLP-NQRTLASLFKTCAS---------LSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFY----- 145 (575)
Q Consensus 82 ~~~~~m~~~-~~~~~~p-~~~t~~~ll~~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----- 145 (575)
.+|+..... | ..| +...|...+....+ .| +++.++.+++..++........+|.......
T Consensus 105 ~~~~~al~~~g---~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 105 QAYDFALDKIG---MEIMSYQIWVDYINFLKGVEAVGSYAENQ-RITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHTT---TSTTCHHHHHHHHHHHHHSCCCSSTTHHH-HHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHCC---CCcccHHHHHHHHHHHhcCCCcccHHHHh-HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 477776553 3 334 44556665555443 56 8999999999999831111123443332211
Q ss_pred --------HhCCChHHHHHHHHh-------cC------CCC--------cchHHHHHHHHHhC----CCc----hHHHHH
Q 008183 146 --------SRFRSPDNAKKVFDE-------IR------ERD--------VVCYGAMIVGFAQN----SRL----VDSLSV 188 (575)
Q Consensus 146 --------~~~g~~~~A~~~f~~-------m~------~~~--------~~~~~~li~~~~~~----g~~----~~A~~~ 188 (575)
.+.++++.|..++.. +. .|+ ...|...+.-...+ ++. .+|+.+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 134567778776664 11 112 24566665443332 233 377889
Q ss_pred HHHhHHCCCCcCHHHHHHHHHHHHh-------cccHH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 008183 189 FADMRSSDVGSTMYCVSGALRAAAE-------LAAME-------QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254 (575)
Q Consensus 189 ~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 254 (575)
|++.... .+-+...|......+.+ .|+++ +|..+++..++.-.+.+...+..++..+.+.|++++
T Consensus 261 y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 261 YEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 9998774 23356677777777664 68876 899999998863235568899999999999999999
Q ss_pred HHHHHhhhCC-CC-Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 008183 255 ARRVFDENLS-VL-NS-IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA-LCNAGLAGESEKWIERMK 330 (575)
Q Consensus 255 A~~~~~~~~~-~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~ 330 (575)
|.++|++++. .| +. ..|...+..+.+.|+.++|.++|++..+... .+...|...... +...|+.++|..+|+...
T Consensus 340 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 340 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 9999998665 33 32 5899999999999999999999999987532 223333322222 335899999999999885
Q ss_pred HhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 331 VRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM----PFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 331 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
.. .| +...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+......|+.+.+..+.+++.+..|.
T Consensus 419 ~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 419 KK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 54 35 4789999999999999999999999987 23342 558999999999999999999999999988774
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=9.5e-12 Score=136.49 Aligned_cols=365 Identities=10% Similarity=0.063 Sum_probs=277.6
Q ss_pred CCCCccHHHHHHHHHhhC--C-CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHHHHH
Q 008183 12 QNTSTDPRIVHARALKSS--Q-ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFL 85 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g--~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~~~~ 85 (575)
.+.+..+..+++.++-.+ + .+....+.|+....+. +.....+..++...-+ ...+-..+...|. |..+|+
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYk 1073 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFR 1073 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHH
Confidence 455667777888777332 3 5567888888887777 5566666655554333 3334455566666 999998
Q ss_pred HHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCC
Q 008183 86 SMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERD 165 (575)
Q Consensus 86 ~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 165 (575)
+... .....+.++. ..+ +++.|.++.+.+ .++.+|..+..++.+.|++++|.+.|... .|
T Consensus 1074 Ka~~--------~~~A~~VLie---~i~-nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1074 KFDV--------NTSAVQVLIE---HIG-NLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred HcCC--------HHHHHHHHHH---HHh-hHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 8532 1122333333 455 788888887754 45789999999999999999999999765 67
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 245 (575)
...|.-++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++...+..+.+.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 8889999999999999999999999887754 44333445889999999888644442 2 4566677789999
Q ss_pred HHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
|...|++++|..+|.. . ..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|...|++..|...
T Consensus 1205 le~eg~YeeA~~~Y~k-A-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNN-V-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHhcCCHHHHHHHHHh-h-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999998 3 58999999999999999999999876 3678999999999999999999886
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc--CChHHHHHHHHHHHhcC
Q 008183 326 IERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIH--GKADMASKMGKRLIDIN 401 (575)
Q Consensus 326 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~ 401 (575)
... +..+...+..++..|.+.|.+++|..+++.. ++.|. ...|+-|...+.+. ++..++.++|..-....
T Consensus 1273 gl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1273 GLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 543 3456677789999999999999999999776 55553 56677777777665 45666677776555544
Q ss_pred C-----CCchhHHHHHHHHHhCCCchHHHHH
Q 008183 402 P-----YDDSAYVIVANVLSGVGRWDEVAEV 427 (575)
Q Consensus 402 p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 427 (575)
| .+...|.-++-.|.+.|+|+.|...
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4 4667899999999999999998843
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=2.1e-13 Score=125.03 Aligned_cols=196 Identities=16% Similarity=0.054 Sum_probs=153.6
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
+++...+..+...+.+.|++++|...|++++. +.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56677788888888899999999999887554 5567788888888999999999999999888763 22567778888
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHH
Q 008183 311 TALCNA-----------GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRAL 377 (575)
Q Consensus 311 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 377 (575)
.++... |++++|...+++... +.|+ ...+..+...|...|++++|...|++. .+..+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 999999999998853 3565 678888999999999999999999887 222778999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 378 LSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 378 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
..++...|++++|...++++++.+|.++.++..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.1e-13 Score=126.04 Aligned_cols=218 Identities=13% Similarity=0.038 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--C---CC----hhhHHH
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--V---LN----SIAWNA 273 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~----~~~~~~ 273 (575)
.+..+...+...|++++|...+..+++.. .+...+..+...|...|++++|.+.|++++. + ++ ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555555554 4555566666666666666666666655333 1 11 356666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRA 352 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 352 (575)
+...|...|++++|+..|++..+. .|+. ..+...|++++|...++.... ..|+ ...+..+...+...
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHh
Confidence 777777777777777777777664 3442 234555777888888877632 2343 56777788888888
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 353 GRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 353 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
|++++|...|++. ...| +..+|..+...+...|++++|...++++++..|.++.++..+..+|...|++++|...+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888888888776 2233 5788888888888899999999999999888888888888899999999999999988887
Q ss_pred HhhC
Q 008183 431 MKDR 434 (575)
Q Consensus 431 m~~~ 434 (575)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2.9e-13 Score=128.59 Aligned_cols=242 Identities=10% Similarity=-0.106 Sum_probs=186.8
Q ss_pred hCCCchHHHHHHHHhHHCCCC--c-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHH
Q 008183 178 QNSRLVDSLSVFADMRSSDVG--S-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSD 254 (575)
Q Consensus 178 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 254 (575)
..|++++|++.|+++.+.... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888775321 1 34577778888888899999999998888874 5568888999999999999999
Q ss_pred HHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008183 255 ARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332 (575)
Q Consensus 255 A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 332 (575)
|.+.|++++. +.+...|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988554 456788999999999999999999999999875 344444445555567779999999999877544
Q ss_pred cCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 333 YKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
. +++...+ .++..+...++.++|...+++. ...|+ ..+|..+...+...|++++|...++++++.+|.+..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2 3334444 4777788888899999999876 32332 578899999999999999999999999999987755
Q ss_pred hHHHHHHHHHhCCCchHHHHHH
Q 008183 407 AYVIVANVLSGVGRWDEVAEVR 428 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~ 428 (575)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 55677778888877665
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.2e-13 Score=126.80 Aligned_cols=234 Identities=9% Similarity=-0.043 Sum_probs=172.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCc----hhHHH
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGL--DRN----VIVGT 240 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~ 240 (575)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+++... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356666777777777777777777776665 6666777777777777777777777777766421 111 46777
Q ss_pred HHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008183 241 GLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLA 319 (575)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 319 (575)
.+...|.+.|++++|.+.|++++. .|+ ...+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 888888888888888888887444 333 234666788888888888887752 22456677778888888999
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 320 GESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRL 397 (575)
Q Consensus 320 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 397 (575)
++|...+++..... +.+...+..+...|.+.|++++|...|++. ...| +..+|..+...+...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999998875432 234678888888999999999999988877 3344 4888899999999999999999999999
Q ss_pred HhcC------CCCchhHHHHH
Q 008183 398 IDIN------PYDDSAYVIVA 412 (575)
Q Consensus 398 ~~~~------p~~~~~~~~l~ 412 (575)
++.. |.+...+..+.
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHH
Confidence 9887 66655544443
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=1.3e-11 Score=116.99 Aligned_cols=251 Identities=9% Similarity=-0.021 Sum_probs=147.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC--HHHHHHHHHHHH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST--MYCVSGALRAAA 212 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 212 (575)
.......+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+..|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455666777788888877777643 2445777777778888888888888887776332221 233666667777
Q ss_pred hcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHH
Q 008183 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLEL 290 (575)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 290 (575)
..|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|++++. +.+...|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777654 44556677777777777777777777776444 33444555555223333466666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCC
Q 008183 291 FHLLEMRGFAPDEYSFLAVLTALCNAGL---AGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPF 367 (575)
Q Consensus 291 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (575)
|++..+.. +.+...+..+..++...|+ .++|...+++......-.|+.. -
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~------------------------- 217 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K------------------------- 217 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-------------------------
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-------------------------
Confidence 66655532 1123333334433333333 3333333333321111011100 0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 368 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
.....+|..+...|...|++++|...++++++++|.++.+...+.....
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 0012567778888888999999999999999999988776665544443
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=1.4e-11 Score=117.07 Aligned_cols=226 Identities=7% Similarity=-0.139 Sum_probs=133.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCchhHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE----LAAMEQCRVIHGHAVVSGLDRNVIVGT 240 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 240 (575)
+..++..+...|...|++++|++.|++..+. -+...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3345555555666666666666666666552 233445555555555 666666666666666554 455566
Q ss_pred HHHHHHHc----cCCHHHHHHHHhhhCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 241 GLIDGYGK----AGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ----QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 241 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
.+..+|.. .+++++|.+.|++.+...+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 66666666666664444555666666666666 666666666666666654 34455555555
Q ss_pred HHh----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 008183 313 LCN----AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAMPFEPDAAVWRALLSFSAI- 383 (575)
Q Consensus 313 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~- 383 (575)
+.. .+++++|...+++.... .+...+..+...|.. .+++++|...|++.--..+...+..|...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 555 66667777666655322 234555556666666 66666666666654111225555566666666
Q ss_pred ---cCChHHHHHHHHHHHhcCCC
Q 008183 384 ---HGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 384 ---~g~~~~a~~~~~~~~~~~p~ 403 (575)
.+++++|.+.+++..+.+|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 66666676666666666653
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=2.3e-11 Score=115.54 Aligned_cols=225 Identities=8% Similarity=-0.105 Sum_probs=195.4
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHHHHHHhhhCCCCChhhHHHHH
Q 008183 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK----AGIVSDARRVFDENLSVLNSIAWNAMM 275 (575)
Q Consensus 200 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li 275 (575)
+..++..+...+...+++++|...+....+. .+...+..+...|.. .|++++|.+.|++.+...+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556777888888999999999999999984 356778889999999 999999999999977667888999999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 276 AGYAQ----QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN----AGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 276 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|..++++.. +.+ +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcC---cHHHHHHHHH
Confidence 99999 999999999999998875 77888888888998 999999999999884 333 5677788888
Q ss_pred HHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh--
Q 008183 348 AMGR----AGRLEDAERIAMAMPFEPDAAVWRALLSFSAI----HGKADMASKMGKRLIDINPYDDSAYVIVANVLSG-- 417 (575)
Q Consensus 348 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 417 (575)
.|.. .+++++|...|++.--..+...+..+...+.. .+++++|...+++..+.+| +.++..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8887 99999999999887323467888889999999 9999999999999999876 5688899999999
Q ss_pred --CCCchHHHHHHHHHhhCCC
Q 008183 418 --VGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 418 --~g~~~~a~~~~~~m~~~~~ 436 (575)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887664
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=4.4e-12 Score=118.82 Aligned_cols=197 Identities=10% Similarity=-0.039 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
...+..+...|...|++++|.+.|++++. +.+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555566666666666666666665333 3345566666666667777777777776666543 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHH
Q 008183 314 CNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMA 390 (575)
Q Consensus 314 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 390 (575)
...|++++|..+++++.. .+..|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777766632 223343 456666666777777777777777665 2223 466677777777777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 391 SKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 391 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...++++.+..|.+...+..+...|...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777777766667777777777777777777777776654
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=8.9e-12 Score=116.69 Aligned_cols=206 Identities=10% Similarity=-0.013 Sum_probs=126.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 245 (575)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 4567777777778888888888877776532 2234444555555555555555555555554442 22
Q ss_pred HHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 008183 246 YGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP-DEYSFLAVLTALCNAGLAGESEK 324 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 324 (575)
+...|..+...|...|++++|++.|+++.+.+..| +...+..+...+...|++++|..
T Consensus 104 ---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 104 ---------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444444455555555555555555554422233 23445555566666666666666
Q ss_pred HHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 325 WIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 325 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
++.+.... .| +...+..+...|...|++++|...+++. ...| +...+..+...+...|+.++|.+.++++.+..
T Consensus 163 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 66665332 23 3566667777777777777777777765 3333 46677777788888888888888888888888
Q ss_pred CCCchhH
Q 008183 402 PYDDSAY 408 (575)
Q Consensus 402 p~~~~~~ 408 (575)
|.++...
T Consensus 240 p~~~~~~ 246 (252)
T 2ho1_A 240 PGSLEYQ 246 (252)
T ss_dssp TTSHHHH
T ss_pred CCCHHHH
Confidence 8776543
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=6.1e-12 Score=125.04 Aligned_cols=244 Identities=10% Similarity=0.001 Sum_probs=201.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCc-CHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGS-TMYCVSGALRAAAELAA-MEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
...|+.+...+.+.|++++|++.|++.... .| +...|..+..++...|+ +++|...++.+++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 456888888899999999999999998874 45 45678888888889996 999999999999875 55788999999
Q ss_pred HHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHH
Q 008183 244 DGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN-AGLAG 320 (575)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 320 (575)
.+|.+.|++++|...|++++. +.+...|..+...+.+.|++++|+..|+++.+.... +...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998655 668889999999999999999999999999987443 67888888888888 66657
Q ss_pred HH-----HHHHHHHHHhcCCCCC-hhHHHHHHHHHhccC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC------
Q 008183 321 ES-----EKWIERMKVRYKLEPG-LEHYTCLISAMGRAG--RLEDAERIAMAMPFEPD-AAVWRALLSFSAIHG------ 385 (575)
Q Consensus 321 ~a-----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g------ 385 (575)
+| ...+.+... +.|+ ...|..+...|.+.| ++++|.+.++++...|+ ...+..+...|...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 76 477776643 4565 678888888899888 68999999888755564 788888999988864
Q ss_pred --C-hHHHHHHHHHH-HhcCCCCchhHHHHHHHHH
Q 008183 386 --K-ADMASKMGKRL-IDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 386 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 416 (575)
+ .++|.++++++ .+.+|.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 2 58999999999 8999988888887766554
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=5.9e-12 Score=115.34 Aligned_cols=196 Identities=13% Similarity=0.062 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
...+..+...|...|++++|.+.|++++. +.+...|..+...|...|++++|.+.|++..+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44555556666666666666666655332 3345556666666666666666666666665542 22455666666666
Q ss_pred Hhc-CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 008183 314 CNA-GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 314 ~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 389 (575)
... |++++|..+++.+.. .+..|+ ...+..+...+...|++++|...|+++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 666 677777766666633 222333 455666666666777777777666665 2233 36666677777777777777
Q ss_pred HHHHHHHHHhcCC-CCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 390 ASKMGKRLIDINP-YDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 390 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
|...++++.+..| .++..+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777776 6666666667777777777777777776654
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=4.9e-12 Score=115.78 Aligned_cols=194 Identities=14% Similarity=0.008 Sum_probs=113.5
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++..++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33445555555555555555555555554421 1233444555555555555555555555555543 334455555555
Q ss_pred HHHcc-----------CCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 245 GYGKA-----------GIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 245 ~~~~~-----------g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
.|.+. |++++|.+.|++++. +.+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 56555 777777777776443 4456677777777888888888888888777766 57777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
++...|++++|...|++.... .|+ ...+..+...+.+.|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 788888888888888777432 454 566777777788888888887777654
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=2.2e-11 Score=111.51 Aligned_cols=203 Identities=15% Similarity=0.049 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHH
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQ 280 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~ 280 (575)
.+..+...+...|++++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|++++. +.+...|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33444444444455555555544444432 33344555566666666666666666655332 3345556666666666
Q ss_pred c-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHH
Q 008183 281 Q-GDQSTVLELFHLLEMRGFAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 281 ~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 357 (575)
. |++++|+..|+++.+.+..|+ ...+..+..++...|++++|...+.+.... .|+ ...+..+...|.+.|++++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHH
Confidence 6 677777777766665323333 455666667777777777777777766432 333 5667777777778888888
Q ss_pred HHHHHHhC-CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHH
Q 008183 358 AERIAMAM-PFE--PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409 (575)
Q Consensus 358 A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 409 (575)
|...+++. ... .+...+..+...+...|+.+.|..+++.+.+..|.++....
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88777766 222 35666777777778888888888888888888887765543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=2.9e-12 Score=119.18 Aligned_cols=170 Identities=16% Similarity=0.095 Sum_probs=86.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
+..+...|.+.|++++|.+.|++++. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 33333344444444444444433221 2233444444444445555555555555444432 22344455555555555
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMG 394 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 394 (575)
|++++|..++++..... +.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++++|...+
T Consensus 139 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp SCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 55555555555553221 123445555555666666666666666554 1222 3556666666666677777777777
Q ss_pred HHHHhcCCCCchhHHHH
Q 008183 395 KRLIDINPYDDSAYVIV 411 (575)
Q Consensus 395 ~~~~~~~p~~~~~~~~l 411 (575)
+++.+..|.++.++..+
T Consensus 217 ~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHccCcchHHHHHHH
Confidence 77777666665554443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=4.9e-12 Score=117.57 Aligned_cols=199 Identities=10% Similarity=0.025 Sum_probs=156.2
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
.....+..+...+...|++++|.+.|++++. +.+...|..+...|...|++++|++.|++..+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456777888889999999999999998554 4567889999999999999999999999998864 336788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 389 (575)
.+...|++++|..+++++.... +.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999885432 235778889999999999999999999887 3334 68899999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
|...++++.+..|.++.++..+..+|...|++++|...+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987643
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=2e-12 Score=130.79 Aligned_cols=259 Identities=12% Similarity=0.002 Sum_probs=155.5
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcC-H----HHHHHHHHHHHhcccHHHHHHHHHHHHHh----C-CCCchhHHHHH
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGST-M----YCVSGALRAAAELAAMEQCRVIHGHAVVS----G-LDRNVIVGTGL 242 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~l 242 (575)
...+...|++++|+..|++..+.+ |+ . ..+..+...+...|++++|...+...++. + .+....++..+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444455555555555444421 21 1 23444444444455555555554444332 1 01123455556
Q ss_pred HHHHHccCCHHHHHHHHhhhCCC--------CChhhHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc
Q 008183 243 IDGYGKAGIVSDARRVFDENLSV--------LNSIAWNAMMAGYAQQGD-----------------QSTVLELFHLLEMR 297 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~ 297 (575)
...|...|++++|.+.|++++.. ....+|..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66666666666666666553320 122355666666666777 67777666655332
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---
Q 008183 298 ----GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM--- 365 (575)
Q Consensus 298 ----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m--- 365 (575)
+..| ...++..+...+...|++++|..++++......-.++ ...+..+...|...|++++|...+++.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 2246666777777888888888888766432211112 236777888888888888888887765
Q ss_pred -CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 366 -PFEP----DAAVWRALLSFSAIHGKADMASKMGKRLIDINPY------DDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 366 -~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+-.. ...++..+...+...|++++|...++++++..+. ...++..+..+|...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1011 1567788888888999999999999888875422 234778889999999999999999887765
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=5.9e-12 Score=119.44 Aligned_cols=218 Identities=6% Similarity=-0.161 Sum_probs=111.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG 247 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 247 (575)
+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+...|.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 44444555555555555555555554421 1234445555555555555555555555555542 334555666666666
Q ss_pred ccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008183 248 KAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 248 ~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
+.|++++|.+.|++++. .|+...+...+..+...|++++|...+++..... +++...+ .++..+...++.++|...+
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHH
Confidence 66666666666665333 2333333333334455566666666666555442 2232233 2455555566666666666
Q ss_pred HHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008183 327 ERMKVRYKLEPG-----LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMG 394 (575)
Q Consensus 327 ~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 394 (575)
.... ...|+ ...+..+...|.+.|++++|...|++. ...|+. +.....++...|++++|.+.+
T Consensus 201 ~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 201 KADA---TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHC---CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHh---cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6542 12221 356666677777777777777777666 344521 122233445556666665544
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=8.6e-12 Score=125.54 Aligned_cols=196 Identities=14% Similarity=0.035 Sum_probs=118.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCC--------------------hHHHHH
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGD--------------------QSTVLE 289 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 289 (575)
++..+...|...|++++|...+++++. .++ ..++..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444455555555555555555554322 111 2345555556666666 666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHH
Q 008183 290 LFHLLEMR----GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAER 360 (575)
Q Consensus 290 l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 360 (575)
.+++..+. +..| ...++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66554321 1111 1235566666677777777777777666432211122 2366677777777788777777
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhCCCchHHHH
Q 008183 361 IAMAM----PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYD------DSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 361 ~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
.+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..+...|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665 11111 4567777778888888888888888877654221 3467778888888888888888
Q ss_pred HHHHHhh
Q 008183 427 VRKVMKD 433 (575)
Q Consensus 427 ~~~~m~~ 433 (575)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=1.1e-11 Score=120.97 Aligned_cols=260 Identities=14% Similarity=0.026 Sum_probs=161.3
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCcC-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CCC-CchhHHHHH
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDVGST-----MYCVSGALRAAAELAAMEQCRVIHGHAVVS----GLD-RNVIVGTGL 242 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~l 242 (575)
...+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+....+. +.. ....++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344445555555555555554431 21 133444444555555555555555444322 111 123455666
Q ss_pred HHHHHccCCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 008183 243 IDGYGKAGIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGD--------------------QSTVLELFHLL 294 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m 294 (575)
...|...|++++|.+.+++++. .++ ..++..+...|...|+ +++|.+.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6667777777777766665332 112 2356666667777777 77777777665
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 295 EMR----GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 295 ~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
... +..| ...++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 1111 1345666777778888888888888776432211122 346777888888889998888888765
Q ss_pred ----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 366 ----PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYD------DSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 366 ----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
+..++ ..++..+...+...|++++|...++++++..+.. ..++..+...|...|++++|...+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11122 5677788888999999999999999888754321 347778999999999999999999887
Q ss_pred hhC
Q 008183 432 KDR 434 (575)
Q Consensus 432 ~~~ 434 (575)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 753
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=1.2e-11 Score=122.89 Aligned_cols=227 Identities=10% Similarity=0.025 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC-HHHHHHHHhhhCC--CCChhhHHHHHHHH
Q 008183 202 YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI-VSDARRVFDENLS--VLNSIAWNAMMAGY 278 (575)
Q Consensus 202 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~--~~~~~~~~~li~~~ 278 (575)
..|..+...+...|++++|...+..+++.. +.+..+|+.+..+|.+.|+ +++|++.|++++. +.+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467777778888999999999999999875 5678899999999999997 9999999998665 66788999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhc-cCChH
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGR-AGRLE 356 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~-~g~~~ 356 (575)
...|++++|+..|+++.+.... +...|..+..++...|++++|...++++... .|+ ...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999987433 7788999999999999999999999988543 564 7889999999998 66668
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC--------
Q 008183 357 DA-----ERIAMAM-PFEP-DAAVWRALLSFSAIHG--KADMASKMGKRLIDINPYDDSAYVIVANVLSGVG-------- 419 (575)
Q Consensus 357 ~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 419 (575)
+| +..|++. .+.| +...|..+...+...| ++++|.+.+.++ +.+|+++.++..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 87 4666665 4566 4889999999998888 689999999998 888999999999999999874
Q ss_pred -CchHHHHHHHHH-hhC
Q 008183 420 -RWDEVAEVRKVM-KDR 434 (575)
Q Consensus 420 -~~~~a~~~~~~m-~~~ 434 (575)
.+++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 258999999998 543
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=1.7e-11 Score=125.45 Aligned_cols=374 Identities=10% Similarity=-0.016 Sum_probs=235.3
Q ss_pred HHHHhHcCCChHHHHHHHccCCC-CChhhHHHHHHHHhcCch------HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhh
Q 008183 39 LITNYSKSNLLSYSLRLFNHIPS-PNIVSWTALISAHSNSPL------SLNIFLSMLRHPTLSFLPNQRTLASLFKTCAS 111 (575)
Q Consensus 39 li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~------a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~ 111 (575)
+...+.+.|++++|.+.|.+..+ .+...+..|-..|...|+ |++.|++..+ . +...+..+-..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~-----~--~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD-----T--SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-----------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-----C--CHHHHHHHHHHHHh
Confidence 45566777888888888876642 233333333333333333 6777766653 2 33444444442333
Q ss_pred ch----hhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHH---HHHHHHhcCC-CCcchHHHHHHHHHhCCCch
Q 008183 112 LS----HAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDN---AKKVFDEIRE-RDVVCYGAMIVGFAQNSRLV 183 (575)
Q Consensus 112 ~~----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~ 183 (575)
.+ ++.+.|...+....+.|.. ..+..|..+|...+..++ +.+.+....+ .+...+..+...|...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 22 2778888888888886632 366667777777665443 3334433332 36677888888888888666
Q ss_pred HHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc----CCHHHHH
Q 008183 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELA---AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA----GIVSDAR 256 (575)
Q Consensus 184 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~ 256 (575)
++........+.-...+...+..+...+...| +.++|...+....+.| +++...+..|..+|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 65555333332212223336777777777788 8899999999998887 56666667788888665 7999999
Q ss_pred HHHhhhCCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHH
Q 008183 257 RVFDENLSVLNSIAWNAMMAG-Y--AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG-----LAGESEKWIER 328 (575)
Q Consensus 257 ~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~ 328 (575)
+.|+... +.+...+..|... | ...+++++|++.|++..+.| +...+..|...|. .| ++++|..+|++
T Consensus 238 ~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 238 ALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 9999966 6677788888777 4 46889999999999998877 5566666666665 45 99999999986
Q ss_pred HHHhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhc
Q 008183 329 MKVRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAMPFEPDAAVWRALLSFSAI----HGKADMASKMGKRLIDI 400 (575)
Q Consensus 329 m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 400 (575)
.. .-+...+..|..+|.. ..++++|..+|++.--..+......|...|.. ..+.++|...++...+.
T Consensus 313 Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 313 AV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred Hh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 62 3456777777777766 44899999999887323345555666666653 45899999999999988
Q ss_pred CCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 401 NPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 401 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
++.........+......++.++|.++.++.+.
T Consensus 388 g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 388 DTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 864433333333333334456667777666543
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=5.3e-11 Score=112.69 Aligned_cols=226 Identities=9% Similarity=-0.026 Sum_probs=158.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC-Ch----hhHHHHHHHHH
Q 008183 205 SGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL-NS----IAWNAMMAGYA 279 (575)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~----~~~~~li~~~~ 279 (575)
......+...|++++|...+..+++.. +.+...+..+...|...|++++|.+.|++++..+ +. .+|..+...|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334445555666666666666665543 3345566677777777777777777777654422 11 23677777788
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHH
Q 008183 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDA 358 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 358 (575)
..|++++|++.|++..+... .+..++..+...+...|++++|...+++.. .+.|+ ...+..+...+...+++++|
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776532 245677778888888888888888887663 33454 56666666233334588888
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhCCCchHHH
Q 008183 359 ERIAMAM-PFEPD-AAVWRALLSFSAIHGK---ADMASKMGKRLIDIN---PYD-----DSAYVIVANVLSGVGRWDEVA 425 (575)
Q Consensus 359 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~ 425 (575)
.+.|++. ...|+ ...|..+...+...|+ .++|...++++++.. |.. ..+|..+...|...|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888877 33453 7777788888888888 888999999888754 432 247888999999999999999
Q ss_pred HHHHHHhhCC
Q 008183 426 EVRKVMKDRR 435 (575)
Q Consensus 426 ~~~~~m~~~~ 435 (575)
..+++..+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999988653
No 58
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.5e-10 Score=119.36 Aligned_cols=295 Identities=9% Similarity=-0.053 Sum_probs=164.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCC------------CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-----C-
Q 008183 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRE------------RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS-----D- 196 (575)
Q Consensus 135 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 196 (575)
...||.|-..|...|++++|++.|++..+ ...++|+.+...|...|++++|+..|++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 34566666666666666666666654321 12345666666666667776666666655431 0
Q ss_pred CCc-CHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHccCCHHHHHHHHhhhCC--CCCh
Q 008183 197 VGS-TMYCVSGALRAAAE--LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG---YGKAGIVSDARRVFDENLS--VLNS 268 (575)
Q Consensus 197 ~~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~--~~~~ 268 (575)
..+ ...++.....++.. .+++++|...|+..++.. +.+...+..+..+ +...++.++|.+.|++++. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 011 22344444334333 235666766666666653 2334444444333 2334555566666655333 3344
Q ss_pred hhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 008183 269 IAWNAMMAGYAQ----QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYT 343 (575)
Q Consensus 269 ~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 343 (575)
..+..+...+.. .|+.++|.+.+++..... +.+..++..+...+...|++++|...+.+.... .|+ ..++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 285 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---IPNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCChHHHHH
Confidence 445444444333 345566666666665542 234555666666666677777777766665322 343 44444
Q ss_pred HHHHHHhc-------------------cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 344 CLISAMGR-------------------AGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 344 ~li~~~~~-------------------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
.+...|.. .+..++|...|++. ...| +..+|..+...+...|++++|+..++++++..|
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 44444322 12345666666655 2233 356677788888888899999999888888776
Q ss_pred CCch---hHHHHHHH-HHhCCCchHHHHHHHHHhhC
Q 008183 403 YDDS---AYVIVANV-LSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 403 ~~~~---~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 434 (575)
++.. .+..+... +...|++++|...+++..+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5433 23334333 34678888888888877653
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=5.3e-12 Score=127.08 Aligned_cols=291 Identities=12% Similarity=0.016 Sum_probs=165.3
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHHhCCChHHHHHHHHhcCC-----C----Ccc
Q 008183 100 RTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDK---PFCGSALVHFYSRFRSPDNAKKVFDEIRE-----R----DVV 167 (575)
Q Consensus 100 ~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~----~~~ 167 (575)
..+...-..+...| +++.|...++.+++...... ..++..+...|...|++++|...|++..+ . ...
T Consensus 10 ~~l~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSG-DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33444444455555 66666666666555532111 13444555555555555555555544321 0 122
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 008183 168 CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD-RNVIVGTGLIDGY 246 (575)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~ 246 (575)
+|..+...|...|++++|+..|++..... |+ .+-+ ....++..+...|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-----------------------------~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RE-----------------------------LNDKVGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-----------------------------HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hh-----------------------------cccccchHHHHHHHHHHH
Confidence 34444455555555555555555443310 00 0000 0123455555555
Q ss_pred HccCC--------------------HHHHHHHHhhhCC----CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 008183 247 GKAGI--------------------VSDARRVFDENLS----VL----NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG 298 (575)
Q Consensus 247 ~~~g~--------------------~~~A~~~~~~~~~----~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 298 (575)
...|+ +++|.+.+++.+. .. ...+|..+...|...|++++|+..|++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55565 5555555554222 11 12356666677777777777777777665421
Q ss_pred -CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC----
Q 008183 299 -FAPD----EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM---- 365 (575)
Q Consensus 299 -~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---- 365 (575)
-.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|...+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0112 236667777778888888888888766432111111 456777888888889988888888766
Q ss_pred CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhCCCch
Q 008183 366 PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDIN------PYDDSAYVIVANVLSGVGRWD 422 (575)
Q Consensus 366 ~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 422 (575)
+..++ ..++..+...+...|++++|...+++.++.. +....++..+...|...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 5678888889999999999999999988753 222346667777777777653
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.38 E-value=7.2e-11 Score=120.83 Aligned_cols=310 Identities=10% Similarity=0.025 Sum_probs=184.7
Q ss_pred HHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCCh---HHHHHHHHhcCCCCcchHHHHHHHHHhCC--
Q 008183 106 FKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSP---DNAKKVFDEIRERDVVCYGAMIVGFAQNS-- 180 (575)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-- 180 (575)
-..+.+.| +++.|.+++....+.|. +..+..|-.+|...|+. ++|...|+...+.+...+..+...+...|
T Consensus 10 a~~~~~~g-~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 10 ANEALKRG-DTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 34455667 88888888888888762 33344455666667777 88888888877667777777777565655
Q ss_pred ---CchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHccC----
Q 008183 181 ---RLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAME---QCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG---- 250 (575)
Q Consensus 181 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---- 250 (575)
++++|++.|++..+.|... .+..+...+...+..+ .+.+.+......| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 6778888888888766433 4444555555544332 3344444444444 3455666777777776
Q ss_pred CHHHHHHHHhhhCCCCChhhHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHH
Q 008183 251 IVSDARRVFDENLSVLNSIAWNAMMAGYAQQG---DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA----GLAGESE 323 (575)
Q Consensus 251 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~ 323 (575)
..+.+..+++. ....+..++..|...|...| +.++|++.|++..+.|. ++...+..+...|... ++.++|.
T Consensus 160 ~~~~a~~~~~~-a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 160 HLDDVERICKA-ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GHHHHHHHHHH-HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred CHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 34445555555 44455557777777888888 78888888888777763 3455444555555443 6788888
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHH-H--hccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHH
Q 008183 324 KWIERMKVRYKLEPGLEHYTCLISA-M--GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHG-----KADMASKMGK 395 (575)
Q Consensus 324 ~~~~~m~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~ 395 (575)
.+|+... .-+...+..|..+ | ...|++++|.++|++.--..+...+..|...|. .| ++++|...++
T Consensus 238 ~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 238 ALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 8887662 2345566666665 3 457788888888877632335667777776666 44 7888888888
Q ss_pred HHHhcCCCCchhHHHHHHHHHh----CCCchHHHHHHHHHhhCCC
Q 008183 396 RLIDINPYDDSAYVIVANVLSG----VGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 396 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 436 (575)
+.. |.++.++..|..+|.. ..++++|...|++..+.|.
T Consensus 312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 777 6677777777777776 3477788888887776654
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=6.9e-12 Score=129.23 Aligned_cols=209 Identities=11% Similarity=-0.028 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCH-HHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 008183 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIV-SDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 217 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 293 (575)
++.+.+.+...... .+.+...+..+...|...|++ ++|.+.|++++. +.+...|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555554433 244677888888899999999 999999988554 45678899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc--------CCh
Q 008183 294 LEMRGFAPDEYSFLAVLTALCNA---------GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRA--------GRL 355 (575)
Q Consensus 294 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~ 355 (575)
..+. .|+...+..+...+... |++++|...+++.... .|+ ...|..+...|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8875 47778888888888888 9999999999988543 454 78888899999888 999
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 356 EDAERIAMAM-PFEP----DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 356 ~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
++|.+.|++. .+.| +...|..+..+|...|++++|...++++++++|.++.++..+..++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999887 3455 6899999999999999999999999999999999999999999999999999999876543
Q ss_pred H
Q 008183 431 M 431 (575)
Q Consensus 431 m 431 (575)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=1.7e-10 Score=102.24 Aligned_cols=163 Identities=17% Similarity=0.123 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLI 346 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 346 (575)
...|..+...|.+.|++++|++.|++..+... -+..++..+..++.+.|++++|...+...... .|+ ...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHHH
Confidence 34555566666666666666666666555422 24555666666666666666666666655322 232 44555556
Q ss_pred HHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 424 (575)
..+...+++++|...+++. ...| +...+..+...+...|++++|.+.++++++.+|.++.+|..+..+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6666667777777666655 2233 4667777777777788888888888888888887777888888888888888888
Q ss_pred HHHHHHHhhC
Q 008183 425 AEVRKVMKDR 434 (575)
Q Consensus 425 ~~~~~~m~~~ 434 (575)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888776653
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=4.9e-11 Score=120.44 Aligned_cols=265 Identities=11% Similarity=-0.020 Sum_probs=148.4
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHhhCCCCch----hHHHHHHHHHHhCCChHHHHHHHHhcCC---------CCcchHHH
Q 008183 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDKP----FCGSALVHFYSRFRSPDNAKKVFDEIRE---------RDVVCYGA 171 (575)
Q Consensus 105 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~ 171 (575)
+-..+...| +++.|...++.+++.... +. .++..+...|...|++++|...|++..+ ....+|..
T Consensus 54 ~g~~~~~~g-~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAG-DCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-cHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 333444555 666666666666655322 22 3455555556666666666665554422 12234555
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHccC
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g 250 (575)
+...|...|++++|+..|++..... .+.+ .+....++..+...|...|
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHHcC
Confidence 5555555666666655555543310 0000 0111234444444455555
Q ss_pred C-----------------HHHHHHHHhhhCC------C--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC--
Q 008183 251 I-----------------VSDARRVFDENLS------V--LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APD-- 302 (575)
Q Consensus 251 ~-----------------~~~A~~~~~~~~~------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-- 302 (575)
+ +++|.+.+++.+. . ....+|..+...|...|++++|+..|++..+... .++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 5 5555554444221 0 1123555566666666666666666666543210 011
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC-------CCCC
Q 008183 303 --EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM-------PFEP 369 (575)
Q Consensus 303 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p 369 (575)
..++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|...+++. +..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 235666777777778888887777766432111111 456777788888888888888887766 1111
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 370 -DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 370 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
...++..+...+...|++++|...++++.++.+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 145777888889999999999999999988764
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=8.2e-11 Score=114.67 Aligned_cols=268 Identities=8% Similarity=-0.013 Sum_probs=145.2
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHHhCCChHHHHHHHHhcCC---------CCcchHHHH
Q 008183 105 LFKTCASLSHAFLFGLSLHSLSLKLSLHDK---PFCGSALVHFYSRFRSPDNAKKVFDEIRE---------RDVVCYGAM 172 (575)
Q Consensus 105 ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~l 172 (575)
.-..+...| +++.|...++.+++...... ..++..+...|...|++++|...|++..+ ....+|..+
T Consensus 11 ~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSG-DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 334455666 77777777777777642211 24566667777777777777777765432 123456666
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCC-CcC----HHHHHHHHHHHHhccc--------------------HHHHHHHHHHH
Q 008183 173 IVGFAQNSRLVDSLSVFADMRSSDV-GST----MYCVSGALRAAAELAA--------------------MEQCRVIHGHA 227 (575)
Q Consensus 173 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~~~~~ 227 (575)
...|...|++++|+..|++..+... .++ ..++..+...+...|+ ++.|...+...
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6677777777777777766543110 011 1244445555555555 55555544443
Q ss_pred HHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC
Q 008183 228 VVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAP 301 (575)
Q Consensus 228 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p 301 (575)
.+. +.. .. ......+..+...|...|++++|...+++..+. +..+
T Consensus 170 ~~~----------------------------~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 170 LSL----------------------------VTA-LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp HHH----------------------------HHH-HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHH----------------------------HHh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 321 000 00 001123444444555555555555555544322 1000
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC-------CCCC
Q 008183 302 -DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM-------PFEP 369 (575)
Q Consensus 302 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p 369 (575)
...++..+...+...|++++|..++++......-.++ ..++..+...|...|++++|...+++. +..+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 1224555556666666666666666655322111111 445666667777777777777776655 1111
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 370 -DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 370 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
...++..+...+...|++++|...++++.++.+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 144667777888888888888888888877654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=1.6e-09 Score=104.78 Aligned_cols=184 Identities=11% Similarity=0.053 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC-Chh-hHHHHHHHHHHcCChHHHHHHHHHH
Q 008183 218 EQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL-NSI-AWNAMMAGYAQQGDQSTVLELFHLL 294 (575)
Q Consensus 218 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m 294 (575)
++|..+++..++.-.+.+...+..++..+.+.|++++|.++|++++. .| +.. .|..+...+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666666521133455666777777777777777777776554 22 233 6777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-C---CC
Q 008183 295 EMRGFAPDEYSFLAVLTALC-NAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-P---FE 368 (575)
Q Consensus 295 ~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~ 368 (575)
.+... ++...|........ ..|+.++|..+|+..... .| +...|..++..+.+.|++++|..+|++. . +.
T Consensus 161 ~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 66432 23333333322221 257777777777766443 23 3567777777777777777777777766 1 24
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 369 P--DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 369 p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
| ....|..++......|+.+.|..+++++.+..|.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 4 356777777777777777777777777777777644
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=1.6e-10 Score=115.74 Aligned_cols=228 Identities=7% Similarity=-0.062 Sum_probs=135.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHC----CCCc-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--C----CCchhHHH
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSS----DVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVSG--L----DRNVIVGT 240 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~ 240 (575)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+.- . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567788888888888887653 1111 22456667777777788888777777765531 1 11134566
Q ss_pred HHHHHHHccCCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHHHH
Q 008183 241 GLIDGYGKAGIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GF-APDEYSFL 307 (575)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~ 307 (575)
.+...|...|++++|.+.|++++. .++ ..+|+.+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 677777777777777777776443 111 135666777777777777777777766542 22 22345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 008183 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPG---LEHYTCLISAMGRAGR---LEDAERIAMAMPFEPD-AAVWRALLSF 380 (575)
Q Consensus 308 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 380 (575)
.+...+...|++++|...+++...-..-..+ ...+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6667777777777777777655322111111 2224555666666666 6666666666643333 3345555566
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 008183 381 SAIHGKADMASKMGKRLID 399 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~ 399 (575)
|...|++++|...++++.+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666665554
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=1.2e-10 Score=103.29 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=138.3
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT 311 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 311 (575)
.++.+|..+...|.+.|++++|.+.|++++. +.+..+|..+...|.+.|++++|+..+........ -+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 3567888888999999999999999987554 55777888888999999999999999988877643 35666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKAD 388 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 388 (575)
.+...++++.+...+...... .|+ ...+..+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888899999999999877433 444 678888899999999999999999887 4455 5888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCc
Q 008183 389 MASKMGKRLIDINPYDD 405 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~~ 405 (575)
+|...++++++.+|.++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999988653
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=1e-08 Score=108.81 Aligned_cols=416 Identities=10% Similarity=0.010 Sum_probs=279.2
Q ss_pred cHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCc----h--HHHHHHHH
Q 008183 17 DPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSP----L--SLNIFLSM 87 (575)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g----~--a~~~~~~m 87 (575)
.-...+...++..+.|..+|..+++.+.+.+.++.|+.+|+++. +.+...|..-+..-.+.+ . +.++|++.
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 33444555555556789999999999999999999999999886 445667887777655543 2 89999998
Q ss_pred hhCCCCCcCCChhhHHHHHHHHhhch-------hhHHHHHHHHHHHHhh-CC-CC-chhHHHHHHHHHHh---------C
Q 008183 88 LRHPTLSFLPNQRTLASLFKTCASLS-------HAFLFGLSLHSLSLKL-SL-HD-KPFCGSALVHFYSR---------F 148 (575)
Q Consensus 88 ~~~~~~~~~p~~~t~~~ll~~~~~~~-------~~~~~a~~~~~~~~~~-g~-~~-~~~~~~~li~~~~~---------~ 148 (575)
.... +..|+...|..-+.-..+.+ +..+..+++|+.++.. |. .+ +..+|...+..... .
T Consensus 130 l~~~--~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 130 LSKE--LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp TCSS--SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHhc--CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 8752 01388887777665544432 0235566888887664 65 44 45688888876543 3
Q ss_pred CChHHHHHHHHhcCC-CCc---chHH---HHHHHHH----------hCCCchHHHHHHHHhHH--CCCC-----------
Q 008183 149 RSPDNAKKVFDEIRE-RDV---VCYG---AMIVGFA----------QNSRLVDSLSVFADMRS--SDVG----------- 198 (575)
Q Consensus 149 g~~~~A~~~f~~m~~-~~~---~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~--~g~~----------- 198 (575)
++++.+.++|+.... |.. .+|. .+...+- ...+++.|...+.++.. .++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 457889999998765 211 2232 2222210 01123334455544321 1111
Q ss_pred ----c-----CH---HHHHHHHHHHHhcc-------cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHH-HH
Q 008183 199 ----S-----TM---YCVSGALRAAAELA-------AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDAR-RV 258 (575)
Q Consensus 199 ----p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~ 258 (575)
| +. ..|...+.---..+ ..+.+..+|++.+.. ++-+..+|-..+..+...|+.++|. ++
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 11 22333333222211 123455678888776 4567888888888888899999996 99
Q ss_pred HhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHh
Q 008183 259 FDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG---------FAPD------------EYSFLAVLTALCN 315 (575)
Q Consensus 259 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p~------------~~t~~~ll~a~~~ 315 (575)
|++++. +.+...|-..+...-+.|++++|.++|+.+.... -.|+ ...|...+....+
T Consensus 367 l~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 367 LKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 988655 4566678888888889999999999999987641 0132 2357777777778
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhcc-CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008183 316 AGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRA-GRLEDAERIAMAM--PFEPDAAVWRALLSFSAIHGKADMASK 392 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 392 (575)
.|.++.|+.+|.......+ .+....|...+.+--+. ++.+.|.++|+.. ....+...|...+.-....|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 8999999999998854311 12234444444444444 4589999999887 223357778888888888999999999
Q ss_pred HHHHHHhcCCC---CchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 393 MGKRLIDINPY---DDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 393 ~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
+|++++...|+ ....|...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999998773 345788889999999999999999999987643
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=2e-11 Score=117.97 Aligned_cols=164 Identities=11% Similarity=0.054 Sum_probs=101.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHC-------CCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CC-
Q 008183 167 VCYGAMIVGFAQNSRLVDSLSVFADMRSS-------DVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS------GL- 232 (575)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~- 232 (575)
.+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34566666666666666666666666542 11222344555666666666666666666665543 21
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC----------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-----
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV----------LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----- 297 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 297 (575)
+....++..+...|...|++++|.+.|++++.. .....|..+...|...|++++|++.|++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 223566777888888888888888888764331 12345666677777777777777777776553
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008183 298 -GFAPD-EYSFLAVLTALCNAGLAGESEKWIERMK 330 (575)
Q Consensus 298 -g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 330 (575)
+..|+ ..++..+...+...|++++|..++++..
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21222 3456666667777777777777777664
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=1.3e-10 Score=116.38 Aligned_cols=226 Identities=5% Similarity=-0.071 Sum_probs=171.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHccCCHHHHHHHHhhhCC----CCC-----hhhHH
Q 008183 207 ALRAAAELAAMEQCRVIHGHAVVS----GLDR-NVIVGTGLIDGYGKAGIVSDARRVFDENLS----VLN-----SIAWN 272 (575)
Q Consensus 207 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~ 272 (575)
....+...|++++|...+....+. +-++ ...++..+...|...|++++|.+.+++++. .++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667889999999999999764 2112 346788899999999999999999987554 122 35788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cCCCCC-hhHHH
Q 008183 273 AMMAGYAQQGDQSTVLELFHLLEMRGF-APD----EYSFLAVLTALCNAGLAGESEKWIERMKVR---YKLEPG-LEHYT 343 (575)
Q Consensus 273 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~ 343 (575)
.+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...+++...- .+..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998865311 112 247888889999999999999999887431 122133 67788
Q ss_pred HHHHHHhccCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCchhHHHHHH
Q 008183 344 CLISAMGRAGRLEDAERIAMAM-PF-----EPD-AAVWRALLSFSAIHGK---ADMASKMGKRLIDINPYDDSAYVIVAN 413 (575)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 413 (575)
.+...|.+.|++++|...+++. .+ .|. ...+..+...+...|+ .++|..++++. ...|....++..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999876 11 222 3335667777888888 77777777765 222334457888999
Q ss_pred HHHhCCCchHHHHHHHHHhh
Q 008183 414 VLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 414 ~~~~~g~~~~a~~~~~~m~~ 433 (575)
.|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=3.3e-09 Score=102.57 Aligned_cols=212 Identities=12% Similarity=0.007 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHH-------hCCCh-------HHHHHHHHhcCC---C-CcchHHHHHHHHHh
Q 008183 117 LFGLSLHSLSLKLSLHDKPFCGSALVHFYS-------RFRSP-------DNAKKVFDEIRE---R-DVVCYGAMIVGFAQ 178 (575)
Q Consensus 117 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~f~~m~~---~-~~~~~~~li~~~~~ 178 (575)
+.+..+++.+++.. +.++.+|..+...+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666777776654 456667776666665 35775 788888887543 3 44578888888888
Q ss_pred CCCchHHHHHHHHhHHCCCCcCH-H-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-ccCCHHHH
Q 008183 179 NSRLVDSLSVFADMRSSDVGSTM-Y-CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYG-KAGIVSDA 255 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A 255 (575)
.|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|+..++.. +.+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888876 34532 2 67777777777888888888888887654 334444444433322 35888888
Q ss_pred HHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008183 256 RRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG-FAP--DEYSFLAVLTALCNAGLAGESEKWIERMK 330 (575)
Q Consensus 256 ~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 330 (575)
.++|+.++. +.+...|..++..+.+.|++++|..+|++..... +.| ....+..++......|+.+.|..++.++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877544 4566777777777888888888888888877753 344 35566667777777788888888877774
Q ss_pred Hh
Q 008183 331 VR 332 (575)
Q Consensus 331 ~~ 332 (575)
..
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=6.1e-09 Score=103.57 Aligned_cols=259 Identities=7% Similarity=-0.056 Sum_probs=154.8
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCcCHH----HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-CCc----hhHHHHHHHH
Q 008183 175 GFAQNSRLVDSLSVFADMRSSDVGSTMY----CVSGALRAAAELAAMEQCRVIHGHAVVSGL-DRN----VIVGTGLIDG 245 (575)
Q Consensus 175 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~ 245 (575)
.+...|++++|...+++........+.. .+..+...+...|+++.|...+....+..- ..+ ...+..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666666655432111221 233444455556666666666665544210 011 1234556666
Q ss_pred HHccCCHHHHHHHHhhhCC------C---C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHH
Q 008183 246 YGKAGIVSDARRVFDENLS------V---L-NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA--P--DEYSFLAVLT 311 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~~~~------~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~ 311 (575)
|...|++++|.+.+++.+. . + ....+..+...|...|++++|...+++....... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 7777777777777765332 1 1 1234555666777788888888888776654221 1 2345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHhccCChHHHHHHHHhCC-CCCC-----HHHHHHHHHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYKLEPGLEHYT-----CLISAMGRAGRLEDAERIAMAMP-FEPD-----AAVWRALLSF 380 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~ 380 (575)
.+...|++++|...+++......-......+. ..+..+...|++++|...+++.- ..|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77788888888888877643211111111121 23344668888888888888772 1221 3356677788
Q ss_pred HHHcCChHHHHHHHHHHHhcCCC-----C-chhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 381 SAIHGKADMASKMGKRLIDINPY-----D-DSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+...|++++|...++++.+..+. . ..++..+..+|...|+.++|...+++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88889999998888887764321 1 12566778888899999999988887654
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=1.7e-10 Score=123.86 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=122.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLI 346 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 346 (575)
..+|+.|...|.+.|++++|++.|++..+... -+..++..+..++.+.|++++|...|++... +.|+ ...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 45666677777777777777777777666421 2456677777777777777777777776642 3455 66777777
Q ss_pred HHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHH
Q 008183 347 SAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEV 424 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 424 (575)
..|.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..++++++++|.++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888887776 44564 778888888999999999999999999999998888999999999999999998
Q ss_pred HHHHHHHh
Q 008183 425 AEVRKVMK 432 (575)
Q Consensus 425 ~~~~~~m~ 432 (575)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887664
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=5.9e-10 Score=111.30 Aligned_cols=222 Identities=8% Similarity=-0.077 Sum_probs=123.2
Q ss_pred HHHhcccHHHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHccCCHHHHHHHHhhhCC----CCC-----hhhHHHHH
Q 008183 210 AAAELAAMEQCRVIHGHAVVSGL-DR----NVIVGTGLIDGYGKAGIVSDARRVFDENLS----VLN-----SIAWNAMM 275 (575)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~li 275 (575)
.+...|++++|...+..+.+..- .+ ...++..+...|...|+++.|...+++++. .++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34456666666666666654310 01 234556666666677776666666655332 111 23556666
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCChhHHHHHHH
Q 008183 276 AGYAQQGDQSTVLELFHLLEMR----GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRY---KLEPGLEHYTCLIS 347 (575)
Q Consensus 276 ~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~ 347 (575)
..|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...+.+...-. +-+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 6677777777777776665432 1111 12355566666677777777777776653310 11112455666667
Q ss_pred HHhccCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 008183 348 AMGRAGRLEDAERIAMAM----PF--EPD-AAVWRALLSFSAIHGK---ADMASKMGKRLIDINPYDDSAYVIVANVLSG 417 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 417 (575)
.|.+.|++++|...+++. +. .|. ...+..+...+...++ +++|...+++.. ..|.....+..+...|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHH
Confidence 777777777777776655 11 122 3334444445555555 555555555421 112233456667777777
Q ss_pred CCCchHHHHHHHHHh
Q 008183 418 VGRWDEVAEVRKVMK 432 (575)
Q Consensus 418 ~g~~~~a~~~~~~m~ 432 (575)
.|++++|...+++..
T Consensus 349 ~g~~~~A~~~~~~al 363 (378)
T 3q15_A 349 SCHFEQAAAFYRKVL 363 (378)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 777777777776654
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=4.8e-10 Score=115.41 Aligned_cols=195 Identities=10% Similarity=-0.014 Sum_probs=127.9
Q ss_pred CcchHHHHHHHHHhCCCc-hHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 008183 165 DVVCYGAMIVGFAQNSRL-VDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLI 243 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 243 (575)
+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|...++..++. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344555555555566666 66666666555431 122445555566666666666666666666554 34455566666
Q ss_pred HHHHcc---------CCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCC--CC
Q 008183 244 DGYGKA---------GIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ--------GDQSTVLELFHLLEMRGFA--PD 302 (575)
Q Consensus 244 ~~~~~~---------g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~--p~ 302 (575)
..|... |++++|.+.|++++. +.+...|..+...|... |++++|++.|++..+.... -+
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 666666 677777777766443 44566677777777776 7788888888877765220 36
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
...+..+..++...|++++|...|++.... .|+ ...+..+...+...|++++|.+.+.++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 777888888888888888888888877433 454 567778888888888888888877766
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=112.34 Aligned_cols=246 Identities=11% Similarity=0.018 Sum_probs=152.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCC--------C---CcchHHHHHHHHHhCCCchHHHHHHHHhHHC------CC
Q 008183 135 PFCGSALVHFYSRFRSPDNAKKVFDEIRE--------R---DVVCYGAMIVGFAQNSRLVDSLSVFADMRSS------DV 197 (575)
Q Consensus 135 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 197 (575)
..++..+...|...|++++|..+|+++.+ . ...+|..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44566677777777777777777776543 1 2345777777888888888888888777653 22
Q ss_pred Cc-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC----
Q 008183 198 GS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVS------GL-DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV---- 265 (575)
Q Consensus 198 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 265 (575)
.| ...++..+...+...|++++|...+..+.+. +. +.....+..+...|...|++++|.+.|++++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 23 3456777778888888888888888887764 22 224567888999999999999999999874431
Q ss_pred --C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh
Q 008183 266 --L----NSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL 339 (575)
Q Consensus 266 --~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 339 (575)
+ ...++..+...|...|++++|...|+++.+... + ..+..+- ....... ...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~-~~~~~~~---~~~~~~~----------------~~~ 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH--E-REFGSVD---DENKPIW----------------MHA 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H-HHHC---------CCHH----------------HHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--H-hcCCCCC---cchHHHH----------------HHH
Confidence 1 235688889999999999999999999876310 0 0000000 0000000 001
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAMP-FEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
..+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 112222333444555555666665552 233 356677777888888888888888887776654
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=2.5e-09 Score=94.14 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008183 237 IVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314 (575)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 314 (575)
..+..+...|...|++++|.+.|++++. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566667777777777777776443 3345566666666666777777776666665542 224455555555556
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008183 315 NAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMG 394 (575)
Q Consensus 315 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 394 (575)
..|++++|..+++..... .| .+...|..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~-------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NP-------------------------------INFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CT-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---Cc-------------------------------HhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 666666666666555322 11 23344444445555555555555555
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 395 KRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 395 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+++.+..|.++.++..++..|...|++++|...+++..
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=1.6e-09 Score=95.49 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF 380 (575)
Q Consensus 304 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 380 (575)
..+..+...+...|++++|...++++. ...| +...+..+...+...|++++|...+++. ...| +...|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVY---DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTC---CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 344555566666777777777776552 2233 3566777777777777888877777766 2233 57888889999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+...|++++|...++++.+..|.++..+..++.+|...|++++|...+++..+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=3e-09 Score=97.81 Aligned_cols=205 Identities=8% Similarity=-0.020 Sum_probs=151.7
Q ss_pred cCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHH
Q 008183 199 STMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMA 276 (575)
Q Consensus 199 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~ 276 (575)
.|+..+......+...|++++|...+...++..-+++...+..+...|.+.|++++|.+.|++.+. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 356778888888899999999999999998886436777777789999999999999999988554 445677888899
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHH
Q 008183 277 GYAQQGDQSTVLELFHLLEMRGFAPDE-------YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG---LEHYTCLI 346 (575)
Q Consensus 277 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 346 (575)
.|...|++++|+..|++..+.... +. ..|..+...+...|++++|...|++.. .+.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 999999999999999998875322 33 457777777888899999999998774 34565 46677777
Q ss_pred HHHhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 347 SAMGRAGRLEDAERIAMAM-P-FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
..|...|+. .++++ . ...+...|..+.. ...+.+++|...++++++++|.++.+...+..+
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 777665543 22222 1 1223444444432 345668999999999999999988766655544
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=2.1e-08 Score=100.01 Aligned_cols=229 Identities=11% Similarity=0.027 Sum_probs=175.3
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHCCC-CcC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--C---CC-chhHHH
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRSSDV-GST----MYCVSGALRAAAELAAMEQCRVIHGHAVVSG--L---DR-NVIVGT 240 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~---~~-~~~~~~ 240 (575)
....+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+....+.- . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456789999999999999865311 122 3467778888899999999999998886641 1 11 245778
Q ss_pred HHHHHHHccCCHHHHHHHHhhhCC----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCHHHHHH
Q 008183 241 GLIDGYGKAGIVSDARRVFDENLS----VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAPDEYSFLA 308 (575)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ 308 (575)
.+...|...|++++|.+.|++++. .++ ..+++.+...|...|++++|+..|++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 889999999999999999987554 122 346788899999999999999999988761 22333678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEPG---LEHYTCLISAMGRAGR---LEDAERIAMAMPFEPD-AAVWRALLSFS 381 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~ 381 (575)
+...+.+.|++++|..++++......-.++ ...+..+...|...|+ +++|...+++.+..|+ ...+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 999999999999999999988544322222 3456677778888888 9999999999765554 45677888999
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 008183 382 AIHGKADMASKMGKRLIDI 400 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~ 400 (575)
...|++++|...++++.+.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=2.2e-08 Score=99.47 Aligned_cols=255 Identities=11% Similarity=0.020 Sum_probs=149.4
Q ss_pred HHHhCCChHHHHHHHHhcCC--C--Cc----chHHHHHHHHHhCCCchHHHHHHHHhHHCCC-CcCH----HHHHHHHHH
Q 008183 144 FYSRFRSPDNAKKVFDEIRE--R--DV----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV-GSTM----YCVSGALRA 210 (575)
Q Consensus 144 ~~~~~g~~~~A~~~f~~m~~--~--~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~~ 210 (575)
.+...|++++|...+++... + +. .+++.+...+...|++++|.+.+++...... .++. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34455566666555554321 1 11 1344445555666666666666665543100 0111 223445555
Q ss_pred HHhcccHHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC------ChhhHHHHHH
Q 008183 211 AAELAAMEQCRVIHGHAVVS----GLD--R-NVIVGTGLIDGYGKAGIVSDARRVFDENLS-VL------NSIAWNAMMA 276 (575)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~~li~ 276 (575)
+...|++++|...++..++. +.. | ....+..+...|...|++++|.+.+++.+. .+ ...+|..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66667777776666665442 211 2 234555667777778888888877776433 11 1245666777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHH
Q 008183 277 GYAQQGDQSTVLELFHLLEMRGFAPD--EYSFL----AVLTALCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCL 345 (575)
Q Consensus 277 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l 345 (575)
.+...|++++|...+++.......++ ..... ..+..+...|++++|...+.... . ..|. ...+..+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~--~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-K--PEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-C--CCCTTCGGGHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC-C--CCCCcchhhHHHHHHH
Confidence 78888888888888887765321111 11111 22334667888888888887663 2 2221 2245667
Q ss_pred HHHHhccCChHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008183 346 ISAMGRAGRLEDAERIAMAM-------PFEPDA-AVWRALLSFSAIHGKADMASKMGKRLIDIN 401 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 401 (575)
...+...|++++|...+++. +..++. ..+..+..++...|+.++|...+++..+..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 77888889988888887765 111122 356666777888899999999888887654
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.07 E-value=1.5e-07 Score=99.86 Aligned_cols=386 Identities=8% Similarity=-0.004 Sum_probs=262.0
Q ss_pred CCCCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCC---hHHHHHHHccCC--C---CChhhHHHHHHHHhcC-----c
Q 008183 12 QNTSTDPRIVHARALKSSQADRSIYNNLITNYSKSNL---LSYSLRLFNHIP--S---PNIVSWTALISAHSNS-----P 78 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~--~---~~~~~~~~li~~~~~~-----g 78 (575)
.+....++.+++++++.-+.+...|...+..-.+.|+ ++.+..+|++.. . |++..|..-+.-..+. +
T Consensus 79 ~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~ 158 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITG 158 (679)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTT
T ss_pred cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccc
Confidence 4567789999999998855777889999999999999 999999998764 3 8888888766543221 1
Q ss_pred -h-----HHHHHHHHhh-CCCCCc-CCC-hhhHHHHHHHHh---------hchhhHHHHHHHHHHHHhhCCCCchhHHHH
Q 008183 79 -L-----SLNIFLSMLR-HPTLSF-LPN-QRTLASLFKTCA---------SLSHAFLFGLSLHSLSLKLSLHDKPFCGSA 140 (575)
Q Consensus 79 -~-----a~~~~~~m~~-~~~~~~-~p~-~~t~~~ll~~~~---------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 140 (575)
. ..++|+.... .| . .|+ ...|...+.-.. ..+ .++.++.++..++......-..+|..
T Consensus 159 ~~~~r~~vr~~FErAl~~vG---~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~-~~~~~R~iy~raL~iP~~~~~~~w~~ 234 (679)
T 4e6h_A 159 GEEARNIVIQAFQVVVDKCA---IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ-RVQYIRKLYKTLLCQPMDCLESMWQR 234 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---TTCSSCHHHHHHHHHHHHTCCCCSHHHHHH-HHHHHHHHHHHHTTSCCSSHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC---cccccchHHHHHHHHHHHhccccCcHHHHh-HHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 1 4577877654 34 4 454 345555554332 234 67889999999886322222233332
Q ss_pred HHHHHHh-------------CCChHHHHHHHHhc-------CC--C--------------C------cchHHHHHHHHHh
Q 008183 141 LVHFYSR-------------FRSPDNAKKVFDEI-------RE--R--------------D------VVCYGAMIVGFAQ 178 (575)
Q Consensus 141 li~~~~~-------------~g~~~~A~~~f~~m-------~~--~--------------~------~~~~~~li~~~~~ 178 (575)
....--. ..+++.|...+.++ .. | + ...|...+.---.
T Consensus 235 Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~ 314 (679)
T 4e6h_A 235 YTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESD 314 (679)
T ss_dssp HHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHh
Confidence 2221111 11234455555431 10 0 0 1245555554333
Q ss_pred CCC-------chHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 179 NSR-------LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCR-VIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 179 ~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
++. .+.+..+|++.... ..-+...|...+.-+...|+.+.|. .+++..+.. .+.+...+-..+...-+.|
T Consensus 315 ~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~ 392 (679)
T 4e6h_A 315 NKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNT 392 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred CCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhC
Confidence 321 23456678887764 3346667777777777888888896 999999875 4566777888999999999
Q ss_pred CHHHHHHHHhhhCCC------------CC------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHc-C-CCCCHH
Q 008183 251 IVSDARRVFDENLSV------------LN------------SIAWNAMMAGYAQQGDQSTVLELFHLLEMR-G-FAPDEY 304 (575)
Q Consensus 251 ~~~~A~~~~~~~~~~------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~p~~~ 304 (575)
+++.|.++|+.++.. |+ ...|-..+....+.|..+.|..+|.+..+. + ..+...
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 999999999985542 32 235888888888899999999999999876 3 223333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC----CHHHHHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP----DAAVWRALLS 379 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~ 379 (575)
...+.+.- ...++.+.|..+|+.....+ .-+...+...++.....|+.+.|..+|++. ...| ....|...+.
T Consensus 473 i~~A~lE~-~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 473 LENAYIEY-HISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHHHHH-TTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33333332 12356899999999886653 334667788888888999999999999987 2233 3578999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 380 FSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 380 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
--.+.|+.+.+..+.+++.+..|+++.
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999999999999999999999997753
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=1.7e-09 Score=116.18 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=124.3
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
+...++.|...|.+.|++++|.+.|+++++ +.+..+|+.+...|.+.|++++|++.|++..+... -+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 456777788888888888888888877554 44567788888888888888888888888777532 246778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 389 (575)
+...|++++|.+.|++..+ +.|+ ...|+.+...|.+.|++++|.+.|++. .+.|+ ...|..|...+...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 8888888888888887743 3565 677888888888888888888888776 45664 7788888888888888888
Q ss_pred HHHHHHHHHhc
Q 008183 390 ASKMGKRLIDI 400 (575)
Q Consensus 390 a~~~~~~~~~~ 400 (575)
|.+.+++++++
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887754
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=5.2e-09 Score=96.14 Aligned_cols=190 Identities=9% Similarity=-0.019 Sum_probs=128.1
Q ss_pred CchhHHHHHHHHHHccCCHHHHHHHHhhhCC--C-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008183 234 RNVIVGTGLIDGYGKAGIVSDARRVFDENLS--V-LNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVL 310 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 310 (575)
.|+..+..+...|.+.|++++|.+.|++.+. + ++...|..+..+|...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3556777777788888888888888876444 3 56666666777788888888888888887764322 445677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC-h-------hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC---HHHHHHHH
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEPG-L-------EHYTCLISAMGRAGRLEDAERIAMAM-PFEPD---AAVWRALL 378 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll 378 (575)
..+...|++++|...+++.... .|+ . ..|..+...+...|++++|.+.|++. .+.|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 7778888888888888777433 343 3 34666667777778888888887776 45564 45566666
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+.. .+...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 66543 344556666666655544444333 33445578999999888764
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=3.4e-09 Score=100.40 Aligned_cols=130 Identities=12% Similarity=0.024 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC------C-
Q 008183 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVS------GL-DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV------L- 266 (575)
Q Consensus 201 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~- 266 (575)
..++..+...+...|++++|...+..+++. +- +....++..+...|...|++++|.+.|++++.. +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555666666666666666666665543 21 223556777788888888888888887764331 1
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008183 267 ---NSIAWNAMMAGYAQQGDQSTVLELFHLLEMR------GFAP-DEYSFLAVLTALCNAGLAGESEKWIERMK 330 (575)
Q Consensus 267 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 330 (575)
...+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++|..++++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2345666667777777777777777776553 1122 23456666666677777777777776663
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=2.2e-08 Score=95.85 Aligned_cols=216 Identities=8% Similarity=-0.068 Sum_probs=103.9
Q ss_pred ChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC----CCCcC-HHHHHHHHHHHHhcccHHHHHHHH
Q 008183 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS----DVGST-MYCVSGALRAAAELAAMEQCRVIH 224 (575)
Q Consensus 150 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 224 (575)
++++|...|++. ...|...|++++|++.|.+.... |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776653 55677777777777777766431 11111 234445555555555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHcCC----
Q 008183 225 GHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ-GDQSTVLELFHLLEMRGF---- 299 (575)
Q Consensus 225 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~---- 299 (575)
...++.. ...|+...+ ..+|+.+...|... |++++|+..|++..+...
T Consensus 101 ~~Al~l~---------------~~~g~~~~~------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH---------------HHcCCHHHH------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 4443321 000111000 12344455555553 566666555555543210
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHhccCChHHHHHHHHhC-CCCCCH-
Q 008183 300 APD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL-----EHYTCLISAMGRAGRLEDAERIAMAM-PFEPDA- 371 (575)
Q Consensus 300 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~- 371 (575)
.+. ..++..+...+...|++++|...|++......-.+.. ..|..+...+...|++++|...|++. .+.|+.
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 000 2345555666666666666666666553221101111 13455555566666666666666655 333321
Q ss_pred -----HHHHHHHHHHH--HcCChHHHHHHHHHHHhcCCC
Q 008183 372 -----AVWRALLSFSA--IHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 372 -----~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~ 403 (575)
..+..++.++. ..+++++|...++++..++|.
T Consensus 234 ~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 234 DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp ----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 12333444443 234456666666555555553
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=8.1e-08 Score=91.93 Aligned_cols=207 Identities=11% Similarity=0.044 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhCCCchHH
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRE-----RD----VVCYGAMIVGFAQNSRLVDS 185 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A 185 (575)
+++.|...+..+ ...|...|++++|...|++..+ .+ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776664 6678899999999999987643 11 45899999999999999999
Q ss_pred HHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc-CCHHHHHHHHhhhCC
Q 008183 186 LSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA-GIVSDARRVFDENLS 264 (575)
Q Consensus 186 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 264 (575)
+..|++..+. +...|+...+ ..+++.+..+|... |++++|.+.|++++.
T Consensus 97 ~~~~~~Al~l---------------~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQI---------------FTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHH---------------HHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------HHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 9999987651 1222332221 23455666777775 888888777776444
Q ss_pred --C--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008183 265 --V--LN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE------YSFLAVLTALCNAGLAGESEKWIERMK 330 (575)
Q Consensus 265 --~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~ 330 (575)
+ .+ ..+|+.+...|.+.|++++|+..|++..+....... .++..+..++...|++++|...+++..
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11 345777888888899999999999888875433222 256677777888999999999988663
Q ss_pred HhcCCCCCh------hHHHHHHHHHh--ccCChHHHHHHHHhC-CCCC
Q 008183 331 VRYKLEPGL------EHYTCLISAMG--RAGRLEDAERIAMAM-PFEP 369 (575)
Q Consensus 331 ~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m-~~~p 369 (575)
.+.|+. ..+..++..|. ..+++++|...|+++ .+.|
T Consensus 227 ---~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 227 ---SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp ---CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred ---hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 445542 13444556664 567899999999887 3444
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=3.4e-07 Score=86.46 Aligned_cols=57 Identities=11% Similarity=-0.051 Sum_probs=25.5
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLSV----LNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
..+..+|...|++++|++++.+.+.. .+...+..++..|.+.|+.+.|.+.+++|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444555555555555442221 1233344444444445555555555544444
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.90 E-value=8.6e-08 Score=90.53 Aligned_cols=131 Identities=8% Similarity=0.053 Sum_probs=96.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHC------CCCc-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------C-
Q 008183 166 VVCYGAMIVGFAQNSRLVDSLSVFADMRSS------DVGS-TMYCVSGALRAAAELAAMEQCRVIHGHAVVS------G- 231 (575)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g- 231 (575)
..+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|...+..+++. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666777777777777777777776543 2222 2346677777777788888888777777654 1
Q ss_pred CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCC------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 232 LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSV------L----NSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 232 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
.+.....+..+...|...|++++|.+.|++++.. + ...++..+...|...|++++|...|++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1234677888999999999999999999875432 1 245788899999999999999999998865
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.86 E-value=5.9e-07 Score=84.80 Aligned_cols=159 Identities=10% Similarity=-0.047 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-----ChhHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-----GLEHYT 343 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~~ 343 (575)
++..+..++...|++++|++++.+-...|..+ +...+..++..+.+.|+.+.|.+.++.|... .| +..+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHH
Confidence 33344444555555555555555443333211 2333444444455555555555555554221 33 122333
Q ss_pred HHHHHH--hc--cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCCCchhH
Q 008183 344 CLISAM--GR--AGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDI----------NPYDDSAY 408 (575)
Q Consensus 344 ~li~~~--~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~p~~~~~~ 408 (575)
.|+.++ .. .++.++|..+|+++ ...|+..+-..|+.++...|++++|++.++.+.+. +|.++.+.
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 333221 11 22455555555554 12233222223333444555555555555544433 24444444
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 409 VIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
..+|......|+ +|.++++++++
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHH
Confidence 444444444443 44455554444
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=7.4e-08 Score=90.43 Aligned_cols=168 Identities=13% Similarity=-0.021 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC-CC-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS-VL-N---SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APD-EYSFLA 308 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ 308 (575)
...+..+...+.+.|++++|.+.|+.++. .| + ...+..+..+|.+.|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455555566666666666665333 12 2 34455555566666666666666666655421 111 233444
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHHHHhcCCCCC-hhHH-----------------HHHHHHHhccCChHHHHHHH
Q 008183 309 VLTALCN--------AGLAGESEKWIERMKVRYKLEPG-LEHY-----------------TCLISAMGRAGRLEDAERIA 362 (575)
Q Consensus 309 ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~~ 362 (575)
+..++.. .|++++|...|++..... |+ .... ..+...|.+.|++++|...|
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4455555 666666666666554332 32 1222 45677888999999999998
Q ss_pred HhC-CCCCC----HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCch
Q 008183 363 MAM-PFEPD----AAVWRALLSFSAIH----------GKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 363 ~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
++. ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 877 22232 45677777888766 8889999999999999998764
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=2.6e-07 Score=86.63 Aligned_cols=171 Identities=12% Similarity=-0.004 Sum_probs=135.5
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hh
Q 008183 264 SVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP-D-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LE 340 (575)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 340 (575)
.+.+...+..+...+.+.|++++|+..|+++.+..... . ...+..+..++...|++++|...|+.......-.|. ..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34566677778888999999999999999998864221 1 567888888999999999999999999655322233 45
Q ss_pred HHHHHHHHHhc--------cCChHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHHcCChHHHHHH
Q 008183 341 HYTCLISAMGR--------AGRLEDAERIAMAM-PFEPD-AAVW-----------------RALLSFSAIHGKADMASKM 393 (575)
Q Consensus 341 ~~~~li~~~~~--------~g~~~~A~~~~~~m-~~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~~ 393 (575)
.+..+...+.. .|++++|...|++. ...|+ ...+ ..+...+...|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67777888888 99999999999887 22332 2222 4567888999999999999
Q ss_pred HHHHHhcCCCCc---hhHHHHHHHHHhC----------CCchHHHHHHHHHhhC
Q 008183 394 GKRLIDINPYDD---SAYVIVANVLSGV----------GRWDEVAEVRKVMKDR 434 (575)
Q Consensus 394 ~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~ 434 (575)
++++++..|.++ .++..+..+|... |++++|...+++..+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999998754 4788888999876 8999999999998764
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=1.9e-07 Score=76.85 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAM 349 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 349 (575)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+++++... .|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~----------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR----------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT-----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC-----------
Confidence 34555555666666666666666655542 223445555555555556666666665555321 121
Q ss_pred hccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 008183 350 GRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
+...|..+...+...|++++|...++++.+..|.+..++..++.+|...|++++|...++
T Consensus 68 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 68 --------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 233344444444444445555555555444444444445555555555555555555555
Q ss_pred HHh
Q 008183 430 VMK 432 (575)
Q Consensus 430 ~m~ 432 (575)
++.
T Consensus 128 ~~~ 130 (136)
T 2fo7_A 128 KAL 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=3.3e-07 Score=83.88 Aligned_cols=183 Identities=9% Similarity=-0.031 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS-VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PDE-YSFLA 308 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~~~ 308 (575)
...+..+...+.+.|++++|.+.|++++. .|+ ...+..+..+|.+.|++++|+..|++..+.... |.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566777888888888888887443 232 245667777888888888888888888765322 111 13333
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHHhCCCCC
Q 008183 309 VLTALCN------------------AGLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLEDAERIAMAMPFEP 369 (575)
Q Consensus 309 ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 369 (575)
+..++.. .|+.++|...|+.+... .|+. ..+.+...... .... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~------~---- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDR------L---- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHH------H----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHH------H----
Confidence 3333332 34455555555544322 2321 11111110000 0000 0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD---SAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
......+...+...|++++|...++++++..|.++ .++..+..+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112455678889999999999999999999876 4688899999999999999999999887654
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=1.2e-07 Score=78.21 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=82.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-PFE-PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
.|..+...+...|++++|..+++++ ... .+...|..+...+...|++++|...++++.+..|.++..+..++..|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667777888888888888888876 223 35788888999999999999999999999999999988999999999999
Q ss_pred CCchHHHHHHHHHhhCC
Q 008183 419 GRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 419 g~~~~a~~~~~~m~~~~ 435 (575)
|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999987654
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=3.8e-08 Score=105.96 Aligned_cols=169 Identities=11% Similarity=-0.075 Sum_probs=134.4
Q ss_pred HccCCHHHHHHHHhhhC--------C--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 247 GKAGIVSDARRVFDENL--------S--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 247 ~~~g~~~~A~~~~~~~~--------~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
...|++++|.+.|++++ . +.+...|..+...|.+.|++++|++.|++..+... -+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 67888999998888755 2 44567788888889999999999999998887532 2567788888888889
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHH
Q 008183 317 GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
|++++|...|++... +.|+ ...|..+...|.+.|++++ .+.|++. .+.| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999988743 3464 6778888888999999988 8888776 3455 477888899999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 394 GKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 394 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
++++++++|.+..++..+..+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999888888888888877665
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.76 E-value=1.4e-08 Score=86.60 Aligned_cols=136 Identities=10% Similarity=0.022 Sum_probs=88.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHH
Q 008183 280 QQGDQSTVLELFHLLEMRGFAP-DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 357 (575)
..|++++|+..++..... .| +...+..+...|.+.|++++|.+.|++... +.|+ ...|..+...|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHH
Confidence 334455555554444321 12 123344455556666666666666665532 2343 5666667777777777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCCCCchhHHHHHHHHHhCCC
Q 008183 358 AERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASK-MGKRLIDINPYDDSAYVIVANVLSGVGR 420 (575)
Q Consensus 358 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 420 (575)
|...|++. .+.| +..+|..+...+...|+.++|.+ .++++++++|.++.+|......+...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777665 3455 47788888888888888876655 4588999999998888888888877764
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=1.8e-07 Score=89.30 Aligned_cols=176 Identities=11% Similarity=0.004 Sum_probs=132.0
Q ss_pred HHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 252 VSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 252 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
.+...+.+.. ..+.+...+..+...+.+.|++++|+..|++..+... -+...+..+...+...|++++|...+++..
T Consensus 102 ~~~l~~~l~~-~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~- 178 (287)
T 3qou_A 102 EEAIRALLDX-VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIP- 178 (287)
T ss_dssp HHHHHHHHHH-HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-
T ss_pred HHHHHHHHHH-HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCc-
Confidence 3344455555 3344555666777778888888888888888877532 256677788888888999999999888763
Q ss_pred hcCCCCChhHHHHH-HHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--ch
Q 008183 332 RYKLEPGLEHYTCL-ISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD--DS 406 (575)
Q Consensus 332 ~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 406 (575)
...|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|++++|...+.++++.+|.+ ..
T Consensus 179 --~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 179 --LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp --GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred --hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 235654333222 23356777788888887776 3455 58889999999999999999999999999999987 77
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
++..|+.+|...|+.++|...+++-.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999988877643
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=9.2e-07 Score=80.05 Aligned_cols=173 Identities=10% Similarity=-0.057 Sum_probs=116.1
Q ss_pred HHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 008183 255 ARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG----LAGESEKWIERMK 330 (575)
Q Consensus 255 A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 330 (575)
|.+.|++.....+..++..+...|...+++++|++.|++..+.| +...+..|-..|.. + +.++|..+|++.
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A- 79 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA- 79 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-
Confidence 44555543444556666666666666667777777776666654 44555555555555 5 677777777766
Q ss_pred HhcCCCCChhHHHHHHHHHhc----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 008183 331 VRYKLEPGLEHYTCLISAMGR----AGRLEDAERIAMAM-PFEPD---AAVWRALLSFSAI----HGKADMASKMGKRLI 398 (575)
Q Consensus 331 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 398 (575)
.+. -+...+..|...|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|...+++..
T Consensus 80 ~~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEA---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 332 245566666667766 67888888888776 33332 6777778777777 678888888888888
Q ss_pred hcCCCCchhHHHHHHHHHhC-C-----CchHHHHHHHHHhhCCC
Q 008183 399 DINPYDDSAYVIVANVLSGV-G-----RWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 399 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 436 (575)
+. |.++.++..|..+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77 44666777888888654 3 78888888888777664
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=5.9e-07 Score=96.65 Aligned_cols=189 Identities=15% Similarity=0.020 Sum_probs=143.3
Q ss_pred HhcccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc
Q 008183 212 AELAAMEQCRVIHGHAV--------VSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ 281 (575)
Q Consensus 212 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 281 (575)
...+++++|.+.++..+ +. .+.+...+..+...|.+.|++++|.+.|++++. +.+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888887 33 245677888889999999999999999988555 56778899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHH
Q 008183 282 GDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAER 360 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 360 (575)
|++++|++.|++..+.... +...+..+..++.+.|++++ ...|++... +.|+ ...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998876322 56778888888999999999 999988743 3454 6788899999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCCCch
Q 008183 361 IAMAM-PFEPD-AAVWRALLSFSAIHGK-----ADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 361 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 406 (575)
.|++. .+.|+ ...|..+..++...++ .+...+..+.+.+..+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99998 56776 6778778777766555 23334444444444444443
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=6.7e-07 Score=86.15 Aligned_cols=221 Identities=7% Similarity=-0.039 Sum_probs=146.0
Q ss_pred CCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHH
Q 008183 179 NSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRV 258 (575)
Q Consensus 179 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 258 (575)
.|++++|.+++++..+... .. + +...++++.|...|..+ ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4667788888877654211 10 0 00135555555555443 4567777888888887
Q ss_pred HhhhCC----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 008183 259 FDENLS----VLN----SIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAP-DEYSFLAVLTALCNAGLAGESEKW 325 (575)
Q Consensus 259 ~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 325 (575)
|.+++. ..+ ..+|+.+...|.+.|++++|+..|++..+. |-.+ -..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776433 111 346777888888889999999888876543 2111 13567778888888 999999999
Q ss_pred HHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCChHHHHHH
Q 008183 326 IERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM-PF---EPD----AAVWRALLSFSAIHGKADMASKM 393 (575)
Q Consensus 326 ~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 393 (575)
|++...-..-..+ ..++..+...|.+.|++++|...|++. .+ .++ ..++..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9877432211111 467888889999999999999998876 11 122 23666777778888999999999
Q ss_pred HHHHHhcCCCCchh-----HHHHHHHHHhCCCchHHHHH
Q 008183 394 GKRLIDINPYDDSA-----YVIVANVLSGVGRWDEVAEV 427 (575)
Q Consensus 394 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 427 (575)
+++.+ ..|....+ ...++..| ..|+.+.+..+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88765432 33455555 56776665553
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.66 E-value=4.7e-07 Score=95.46 Aligned_cols=160 Identities=11% Similarity=0.019 Sum_probs=113.4
Q ss_pred cCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008183 249 AGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 249 ~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
.|++++|.+.|++++. +.+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677778888877444 3456778888888888888888888888887753 225677778888888888888888888
Q ss_pred HHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhc
Q 008183 327 ERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIH---GKADMASKMGKRLIDI 400 (575)
Q Consensus 327 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 400 (575)
++.... .|+ ...+..+...|.+.|++++|.+.|++. ...| +...+..+...+... |+.++|.+.++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 877433 354 678888888888999999999888876 3344 477888899999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 008183 401 NPYDDSAYVIVA 412 (575)
Q Consensus 401 ~p~~~~~~~~l~ 412 (575)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998877766554
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=6.1e-07 Score=78.50 Aligned_cols=155 Identities=11% Similarity=-0.020 Sum_probs=108.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHH-HHh
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA-AAE 213 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 213 (575)
...+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44566677889999999999998775 366788889999999999999999999886543 344332221111 112
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCC---hhhHHHHHHHHHHcCChHHHHH
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLN---SIAWNAMMAGYAQQGDQSTVLE 289 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~li~~~~~~g~~~~A~~ 289 (575)
.+....+...++..++.. +.+...+..+...|...|++++|.+.|++++. .|+ ...+..+...|...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222234566777777653 44577778888888888888888888887554 332 4477778888888888888888
Q ss_pred HHHHHH
Q 008183 290 LFHLLE 295 (575)
Q Consensus 290 l~~~m~ 295 (575)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.64 E-value=3e-07 Score=96.95 Aligned_cols=151 Identities=16% Similarity=0.063 Sum_probs=116.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHH
Q 008183 281 QGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAE 359 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 359 (575)
.|++++|++.|++..+.. +-+...+..+...+...|++++|...+++.. .+.|+ ...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999987753 2357888889999999999999999999874 34565 788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC---CCchHHHHHHHHHhhC
Q 008183 360 RIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV---GRWDEVAEVRKVMKDR 434 (575)
Q Consensus 360 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~ 434 (575)
+.+++. ...| +...|..+...+...|++++|.+.++++.+.+|.+..++..+..+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999887 3445 5889999999999999999999999999999999999999999999999 9999999999887654
Q ss_pred C
Q 008183 435 R 435 (575)
Q Consensus 435 ~ 435 (575)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=8.8e-07 Score=79.90 Aligned_cols=133 Identities=14% Similarity=-0.022 Sum_probs=70.4
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG 317 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 317 (575)
+.+...|.+.|++++|...|++.+. +.+...|..+...|...|++++|+..|++..+... -+..++..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHh
Confidence 3356666666666666666665443 34556666666666666666666666666665422 24455555555554433
Q ss_pred C--HHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 008183 318 L--AGESEKWIERMKVRYKLEPGL--EHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALL 378 (575)
Q Consensus 318 ~--~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 378 (575)
. .+.+...+... +.|+. ..+..+...+...|++++|...|++. .+.|+......+.
T Consensus 137 ~~~~~~~~~~~~~~-----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKL-----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 2 22333333322 12322 22233344455566777777777665 5566655444443
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.63 E-value=1.2e-06 Score=79.00 Aligned_cols=128 Identities=11% Similarity=0.022 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh
Q 008183 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMG 350 (575)
Q Consensus 272 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 350 (575)
+.+...|.+.|++++|+..|++..+... -+...+..+..++...|++++|...|++... +.|+ ...+..+...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 3477788899999999999998887632 2677788888888899999999999988753 3565 677888887776
Q ss_pred ccCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 351 RAGR--LEDAERIAMAMPFEPDA--AVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 351 ~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
..|. .+.+...++... .|+. ..|..+..++...|++++|...+++++++.|.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6554 445566666653 4443 334445556667788999999999999988853
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.61 E-value=1.2e-05 Score=76.42 Aligned_cols=218 Identities=9% Similarity=0.029 Sum_probs=100.2
Q ss_pred chHHHHHHHHhHHCCCCcCHH-HHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hcc---CC
Q 008183 182 LVDSLSVFADMRSSDVGSTMY-CVSGALRAAAELA--AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGY----GKA---GI 251 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~---g~ 251 (575)
.++|++++..+... .|+.. .|+.--..+...+ +++++...++.++... +.+..+++.--..+ .+. ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 35666666666552 34333 3444444444455 5555555555555543 33333444333333 333 44
Q ss_pred HHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008183 252 VSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQS--TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIE 327 (575)
Q Consensus 252 ~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 327 (575)
+++++++++.++. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...++.-...+.+.+..
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~-------- 196 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL-------- 196 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG--------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc--------
Confidence 5555555554332 344445554444444445444 555555555544322 344444333333333320
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcC---
Q 008183 328 RMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADM-ASKMGKRLIDIN--- 401 (575)
Q Consensus 328 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~--- 401 (575)
. ....++++++.++++ ...| |...|+-+-..+.+.|+... ...+..++.+++
T Consensus 197 ---------~-------------~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 197 ---------A-------------TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp ---------C-------------CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred ---------c-------------hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 0 000044444444433 2233 35555555555555544222 334444444443
Q ss_pred CCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 402 PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 402 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
|.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44445555555555555666666666555543
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.60 E-value=2.2e-06 Score=81.56 Aligned_cols=163 Identities=8% Similarity=-0.076 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHH-HHHH
Q 008183 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNA-MMAG 277 (575)
Q Consensus 200 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~-li~~ 277 (575)
+...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|++++|.+.+++++. .|+...... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455666667777788888888888877764 44667777788888888888888888887333 344332222 2223
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
+.+.++.++|+..|++..... +.+...+..+..++...|++++|...+.++.....-..+...+..+...|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 566677777777777776653 2355666777777777777777777777774432111124566667777777777766
Q ss_pred HHHHHHh
Q 008183 358 AERIAMA 364 (575)
Q Consensus 358 A~~~~~~ 364 (575)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.60 E-value=4.1e-07 Score=79.64 Aligned_cols=157 Identities=11% Similarity=0.021 Sum_probs=91.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
...+...+.+.|++++|...|++.+. +.+...|..+...|.+.|++++|+..|++..... |+.... .+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~-~~~~~~--- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYK-SLIAKL--- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHH-HHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHH-HHHHHH---
Confidence 44455556666666666666666333 3445556666666666666666666665554332 222211 111000
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMG 394 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 394 (575)
.+...+...+|...+++. ...| +...+..+...+...|++++|...+
T Consensus 83 -------------------------------~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 -------------------------------ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp -------------------------------HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 001111112234444443 2345 4777777888888888888888888
Q ss_pred HHHHhcCCCC--chhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 395 KRLIDINPYD--DSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 395 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
+++++.+|.. +.++..+..+|...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 8888887754 4477788888888888888888777654
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=2.2e-07 Score=78.90 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=89.3
Q ss_pred CCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 334 KLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 334 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
.+.|+ ...+..+...+.+.|++++|...|++. .+.| +...|..+..++...|++++|...++++++++|.++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34554 567778888899999999999999887 4456 58899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
+..+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887643
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=2.2e-06 Score=77.50 Aligned_cols=173 Identities=9% Similarity=-0.104 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQG----DQSTVLELFHLLE 295 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 295 (575)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++.....+..++..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344455555543 4555666666666667777777777665555566666666666665 5 6777777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhc----cCChHHHHHHHHh
Q 008183 296 MRGFAPDEYSFLAVLTALCN----AGLAGESEKWIERMKVRYKLEPG---LEHYTCLISAMGR----AGRLEDAERIAMA 364 (575)
Q Consensus 296 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 364 (575)
+.| +...+..|-..|.. .+++++|..+|++.. + ..|. ...+..|..+|.. .+++++|..+|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~--~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA-R--DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-S--STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-H--cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554 44555556666655 667777777777652 2 2332 5666677777766 6778888888777
Q ss_pred C-CCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhcCC
Q 008183 365 M-PFEPDAAVWRALLSFSAIH-G-----KADMASKMGKRLIDINP 402 (575)
Q Consensus 365 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 402 (575)
. ...++...+..|...|... | +.++|...+++..+.+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6 2224555666676666543 2 78888888888877764
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.55 E-value=7.4e-05 Score=71.06 Aligned_cols=230 Identities=10% Similarity=-0.025 Sum_probs=150.8
Q ss_pred HHHHhCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhCC--CchHHHHHHHHhHHCCCCcCHHHHHHHHHHH----Hh
Q 008183 143 HFYSRFRSPDNAKKVFDEIRE--R-DVVCYGAMIVGFAQNS--RLVDSLSVFADMRSSDVGSTMYCVSGALRAA----AE 213 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~ 213 (575)
....+....++|+.+++.+.. | +...||.--..+...| +++++++.++.+..... -+...|+.--..+ ..
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHh
Confidence 334444555789999998765 3 4557888888888888 99999999999987532 2233444433333 44
Q ss_pred c---ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHH--HHHHHHhhhCC--CCChhhHHHHHHHHHHcCC---
Q 008183 214 L---AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVS--DARRVFDENLS--VLNSIAWNAMMAGYAQQGD--- 283 (575)
Q Consensus 214 ~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~--- 283 (575)
. ++++++..++..+.+.. +.+-.+++.-.-.+.+.|.++ ++++.+++++. ..|..+|+.-...+.+.|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence 5 78999999999999875 678888888888888899888 99999988554 6678888876665555554
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH-HH
Q 008183 284 ---QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED-AE 359 (575)
Q Consensus 284 ---~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~ 359 (575)
++++++.++++....+. | ...|+-+-..+.+.|+..+ +.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n------------------------------------~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-N------------------------------------PSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-C------------------------------------HHHHHHHHHHHHHTTCCGGGGH
T ss_pred hhhHHHHHHHHHHHHHhCCC-C------------------------------------ccHHHHHHHHHHhcCCChHHHH
Confidence 44444444444433221 3 4444444444444444222 33
Q ss_pred HHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCchhHHHH
Q 008183 360 RIAMAM-PF----EPDAAVWRALLSFSAIHGKADMASKMGKRLID-INPYDDSAYVIV 411 (575)
Q Consensus 360 ~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l 411 (575)
.+.++. .+ ..+...+..+...+.+.|+.++|.++++.+.+ .+|.....|...
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 333333 11 23566777777777777778888888888775 677665555443
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.55 E-value=0.00011 Score=75.27 Aligned_cols=97 Identities=10% Similarity=-0.007 Sum_probs=66.5
Q ss_pred CCccHHHHHHHHHhhCCCcccHHHHHHHHhHcCCChHHHHHHHccCC--CCChhhHHHHHHHHhcCch----HHHHHHHH
Q 008183 14 TSTDPRIVHARALKSSQADRSIYNNLITNYSKSNLLSYSLRLFNHIP--SPNIVSWTALISAHSNSPL----SLNIFLSM 87 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~----a~~~~~~m 87 (575)
++..++.++++.+..- |. |+++.|..+|++.. .|++..|..-+.-..+.+. ...+|+..
T Consensus 10 ~i~~aR~vyer~l~~~-P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLY-MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp --CCHHHHHHHHHHHH-HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred chHHHHHHHHHHHHHC-CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4778888888876542 22 78999999998764 5888899888776655543 67778777
Q ss_pred hhC-CCCCc-CCChhhHHHHHHHHh----hchhhHHHHHHHHHHHHhh
Q 008183 88 LRH-PTLSF-LPNQRTLASLFKTCA----SLSHAFLFGLSLHSLSLKL 129 (575)
Q Consensus 88 ~~~-~~~~~-~p~~~t~~~ll~~~~----~~~~~~~~a~~~~~~~~~~ 129 (575)
... | . +++...|...+.-+. ..+ +.+.++.+++.+++.
T Consensus 75 l~~vg---~d~~s~~iW~~Yi~f~~~~~~~~~-~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 75 LGQFE---NYWDSYGLYKEYIEEEGKIEDEQT-RIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHST---TCTTCHHHHHHHHHHTSSCSSHHH-HHHHHHHHHHHHHTS
T ss_pred HHHcC---CCcccHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHhC
Confidence 653 2 2 235566666665543 235 788999999999874
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.53 E-value=7.9e-06 Score=77.94 Aligned_cols=92 Identities=9% Similarity=0.004 Sum_probs=48.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC----C-C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-H
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS----V-L----NSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAPD-E 303 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 303 (575)
+++.+...|...|++++|...|++++. . . ...+|+.+...|.+.|++++|+..+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 355555555555555555555554331 0 1 1124555556666666666666666554321 22222 4
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAG-LAGESEKWIERM 329 (575)
Q Consensus 304 ~t~~~ll~a~~~~g-~~~~a~~~~~~m 329 (575)
.+|..+..++...| ..++|...+++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 55666666666666 346666666555
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.52 E-value=1.7e-07 Score=79.64 Aligned_cols=120 Identities=12% Similarity=0.027 Sum_probs=100.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 008183 311 TALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKA 387 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 387 (575)
..+...|++++|...+.... ...|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 34456688899998888652 34454 456677899999999999999999987 4566 589999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHH-HHHHhh
Q 008183 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV-RKVMKD 433 (575)
Q Consensus 388 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 433 (575)
++|...++++++++|.++.++..+..+|.+.|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887665 466554
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.51 E-value=4e-06 Score=76.53 Aligned_cols=185 Identities=11% Similarity=-0.079 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCC-hh---hHH
Q 008183 200 TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD-R-NVIVGTGLIDGYGKAGIVSDARRVFDENLS-VLN-SI---AWN 272 (575)
Q Consensus 200 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-~~---~~~ 272 (575)
+...+-.....+...|++++|...++.+++.... + ....+..+..+|.+.|++++|.+.|++.+. .|+ .. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556677888999999999999999986321 1 135778889999999999999999998554 333 22 455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008183 273 AMMAGYAQ------------------QGDQSTVLELFHLLEMRGFAPDEY-SFLAVLTALCNAGLAGESEKWIERMKVRY 333 (575)
Q Consensus 273 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 333 (575)
.+..++.+ .|++++|+..|+++.+. .|+.. ...... + ...+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~------l~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----R------LVFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----H------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----H------HHHHHHHH----
Confidence 55555554 57899999999999875 33322 211111 0 00111111
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 334 KLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 334 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|.+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 012234667788999999999999887 23343 35688899999999999999999999988887654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.50 E-value=2.3e-06 Score=77.10 Aligned_cols=125 Identities=10% Similarity=-0.048 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 008183 306 FLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAI 383 (575)
Q Consensus 306 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 383 (575)
+..+...+...|++++|...|.+. +.|+...+..+...|.+.|++++|.+.|++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344555566677777777777644 2456677777777777788888887777765 2234 57788888888999
Q ss_pred cCChHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 384 HGKADMASKMGKRLIDINPYDD----------------SAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.|++++|...++++++..|.+. .++..+..+|...|++++|...+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998887766 789999999999999999999999988654
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.50 E-value=5.3e-07 Score=74.01 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 417 (575)
..+......|.+.|++++|.+.|++. .+.| +...|..+..++...|++++|+..++++++++|.++.+|..+..+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44445555555666666666655554 2233 355556666666666666666666666666666666666666666666
Q ss_pred CCCchHHHHHHHHHhh
Q 008183 418 VGRWDEVAEVRKVMKD 433 (575)
Q Consensus 418 ~g~~~~a~~~~~~m~~ 433 (575)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666655544
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=1.2e-05 Score=76.67 Aligned_cols=159 Identities=9% Similarity=-0.051 Sum_probs=112.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHH
Q 008183 274 MMAGYAQQGDQSTVLELFHLLEMRG-FAPDEY----SFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTC 344 (575)
Q Consensus 274 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 344 (575)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...+.+......-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877642 223321 2334555566677888888888877442211222 236788
Q ss_pred HHHHHhccCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CchhHH
Q 008183 345 LISAMGRAGRLEDAERIAMAM--------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDINPY------DDSAYV 409 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~ 409 (575)
+...|...|++++|...|++. ...+. ..+|..+...|...|++++|...++++++..+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888887765 11122 447888899999999999999999998875422 145788
Q ss_pred HHHHHHHhCCC-chHHHHHHHHHh
Q 008183 410 IVANVLSGVGR-WDEVAEVRKVMK 432 (575)
Q Consensus 410 ~l~~~~~~~g~-~~~a~~~~~~m~ 432 (575)
.+..+|.+.|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 599998887664
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=7.2e-07 Score=84.72 Aligned_cols=192 Identities=7% Similarity=-0.044 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
...+..+...|.+.|++++|.+.|++++. +.+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444555555666666666666655333 3345555666666666666666666666655432 12345555666666
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008183 314 CNAGLAGESEKWIERMKVRYKLEPGL-EHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASK 392 (575)
Q Consensus 314 ~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~ 392 (575)
...|++++|...|...... .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 6666666666666655322 1211 011111111111111111111 1112223333333333 222 2577888888
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHhhC
Q 008183 393 MGKRLIDINPYDDSAYVIVANVLSGV-GRWDEVAEVRKVMKDR 434 (575)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 434 (575)
.++++.+.+|.+......+...+.+. +.+++|.++|++..+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888888887766666666666666 6688888888877653
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.47 E-value=2.7e-05 Score=79.95 Aligned_cols=319 Identities=8% Similarity=-0.071 Sum_probs=167.9
Q ss_pred HHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhh-CC-CCchhHHHHHHHHHHh----CCChHH
Q 008183 80 SLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKL-SL-HDKPFCGSALVHFYSR----FRSPDN 153 (575)
Q Consensus 80 a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~----~g~~~~ 153 (575)
+..+|++... ..|+...|..-++-..+.+...+....+|+.++.. |. +.+..+|...+..+.. .|+++.
T Consensus 33 ~~~iferal~-----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 33 LESLFGRCLK-----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp HHHHHHHHST-----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred HHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 7777777766 34677777666666655542345566666666654 43 2355566666655432 345666
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008183 154 AKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLD 233 (575)
Q Consensus 154 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 233 (575)
+.++|+....--...+..+-..| ..+... .+..+...++... .+.+..|+.++..+...--.
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y-------------~~fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDF-------------ENFELE---LNKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHH-------------HHHHHH---HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhhhHHHHHHHH-------------HHHHHH---hccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhh
Confidence 77777665431111111111111 111110 0111111111111 12333344444443321000
Q ss_pred CchhHHHHHHHHHHccC--C-----HHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 008183 234 RNVIVGTGLIDGYGKAG--I-----VSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY 304 (575)
Q Consensus 234 ~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 304 (575)
.+...|...++.--..+ - .+.+..+|++++. +.+...|-..+.-+.+.|+.++|..+|++.... |+..
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcH
Confidence 12334544444432211 0 2345667776444 445667777777778888899999999888876 4433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--------CCC---ChhHHHHHHHHHhccCChHHHHHHHHhCCCCC--CH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYK--------LEP---GLEHYTCLISAMGRAGRLEDAERIAMAMPFEP--DA 371 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~ 371 (575)
.+.. +|......++. ++.+....- ..+ ....|...+..+.+.+.++.|..+|++.. .| +.
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~ 319 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGP 319 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCH
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCCh
Confidence 2221 12221111111 222212110 001 12456667777777788999999988873 23 33
Q ss_pred HHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 372 AVWRALLSFSAI-HGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 372 ~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
..|......-.. .++.+.|..+++.+++..|.++..+...++...+.|+.+.|..+|+..
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444332222222 236899999999998877877777777788888889999999888886
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.47 E-value=5.3e-06 Score=79.15 Aligned_cols=163 Identities=7% Similarity=-0.092 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCC--hh
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD-E----YSFLAVLTALCNAGLAGESEKWIERMKVRYKL--EPG--LE 340 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~ 340 (575)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+.+......- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677788888888888877766432211 1 22334455566778888998888876432111 111 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------Cc
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM----PFEPD-----AAVWRALLSFSAIHGKADMASKMGKRLIDINPY------DD 405 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 405 (575)
+|+.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|...++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888888999999888888765 11222 257888899999999999999999998875421 14
Q ss_pred hhHHHHHHHHHhCCCchHH-HHHHHHHh
Q 008183 406 SAYVIVANVLSGVGRWDEV-AEVRKVMK 432 (575)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 432 (575)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788899999999999999 77676654
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.44 E-value=1.5e-06 Score=83.76 Aligned_cols=197 Identities=9% Similarity=-0.049 Sum_probs=149.1
Q ss_pred hcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 008183 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFH 292 (575)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 292 (575)
..|++++|.+++++..+.. +.. .+...+++++|...|.. ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~------------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAK------------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHH------------HHHHHHHcCCHHHHHHHHH
Confidence 3578889999998887652 111 11115889999999988 4667889999999999998
Q ss_pred HHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CC--ChhHHHHHHHHHhccCChHHHHHHHH
Q 008183 293 LLEMR----GFAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKL--EP--GLEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 293 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
+..+. |-.+. ..+|..+...|...|++++|...|++...-+.- .| ...++..+...|.. |++++|...|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 21111 457888889999999999999999876432211 11 14678888889988 99999999988
Q ss_pred hC-CC-----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhCCCchHHHHHHH
Q 008183 364 AM-PF-----EP--DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD------SAYVIVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 364 ~m-~~-----~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 429 (575)
+. .+ .+ ...++..+...+...|++++|...++++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76 11 11 156788899999999999999999999998654332 256677888889999999999999
Q ss_pred HHh
Q 008183 430 VMK 432 (575)
Q Consensus 430 ~m~ 432 (575)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 887
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.43 E-value=4.6e-06 Score=75.13 Aligned_cols=122 Identities=9% Similarity=-0.059 Sum_probs=64.9
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHH
Q 008183 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 219 (575)
.+...|.+.|++++|...|++...++...|..+...|.+.|++++|++.|++..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------------------------- 64 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-------------------------- 64 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------
Confidence 334444455555555555555544444455555555555555555555555444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CC----------------ChhhHHHHHHHHHHc
Q 008183 220 CRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VL----------------NSIAWNAMMAGYAQQ 281 (575)
Q Consensus 220 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~~li~~~~~~ 281 (575)
+.. +.+...+..+..+|.+.|++++|.+.|+.++. +. ....|..+...|.+.
T Consensus 65 ---------~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 134 (213)
T 1hh8_A 65 ---------NRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134 (213)
T ss_dssp ---------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred ---------HhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc
Confidence 332 23344455555555555555555555554322 11 124566667777777
Q ss_pred CChHHHHHHHHHHHHc
Q 008183 282 GDQSTVLELFHLLEMR 297 (575)
Q Consensus 282 g~~~~A~~l~~~m~~~ 297 (575)
|++++|...|++..+.
T Consensus 135 g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 135 EEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHc
Confidence 7777777777777664
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.41 E-value=3.9e-06 Score=68.73 Aligned_cols=108 Identities=9% Similarity=-0.001 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF 380 (575)
Q Consensus 304 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 380 (575)
..+......+.+.|++++|...|++.... .|+ ...|..+...|.+.|++++|...|++. .+.| +...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34555666777777777777777766432 343 667777777888888888888877776 3445 47889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
+...|++++|.+.++++++++|.+..++..|.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999998877766543
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.40 E-value=7.5e-07 Score=75.42 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=85.3
Q ss_pred CCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 334 KLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 334 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
.+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|.++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34453 566777788888999999999998876 3345 68888889999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHhhC
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+..+|...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=8.8e-06 Score=65.65 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PF-EPDAAVWRALLSFS 381 (575)
Q Consensus 304 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 381 (575)
.++..+...+...|++++|..+++++.... +.+...+..+...+.+.|++++|..+|+++ .. ..+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 444555555556666666666666553221 123455566666666666666666666655 12 23566777788888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
...|++++|...++++.+..|.++..+..+..++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 8888888888888888888888777777776666543
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.36 E-value=8.6e-06 Score=69.78 Aligned_cols=125 Identities=12% Similarity=0.006 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFS 381 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 381 (575)
.+..+...+...|++++|...+...... .| +...+..+...+...|++++|...+++. ...| +...|..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555566666777777666665332 23 3566666777777777777777777665 2233 477788888888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHH--HHHHHHhCCCchHHHHHHHHHh
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVI--VANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
...|++++|...++++++..|.+...+.. ++..+...|++++|...++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 89999999999999999999888777644 4444778899999998887664
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.34 E-value=1.4e-05 Score=76.28 Aligned_cols=160 Identities=8% Similarity=-0.114 Sum_probs=99.1
Q ss_pred HHHHHHHHccCCHHHHHHHHhhhCCC-C-Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHH
Q 008183 240 TGLIDGYGKAGIVSDARRVFDENLSV-L-NS------IAWNAMMAGYAQQGDQSTVLELFHLLEMRGF---APD--EYSF 306 (575)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~ 306 (575)
...+..+...|++++|.+.+.+.+.. + .. ..+..+...+...|++++|+..|++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34555666777777777776653321 1 11 1233344556666777777777777664321 112 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHhC-------CCCCC-HHH
Q 008183 307 LAVLTALCNAGLAGESEKWIERMKVRYKLEPG-----LEHYTCLISAMGRAGRLEDAERIAMAM-------PFEPD-AAV 373 (575)
Q Consensus 307 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~ 373 (575)
+.+...|...|++++|..++++........|+ ..++..+...|.+.|++++|...+++. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 77777777778888888777766422111222 246777777788888888888777665 11111 567
Q ss_pred HHHHHHHHHHcCChHHH-HHHHHHHHh
Q 008183 374 WRALLSFSAIHGKADMA-SKMGKRLID 399 (575)
Q Consensus 374 ~~~ll~~~~~~g~~~~a-~~~~~~~~~ 399 (575)
|..+...+...|+.++| ...++++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 77888888888888888 776777664
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.32 E-value=9.2e-06 Score=66.17 Aligned_cols=117 Identities=7% Similarity=-0.045 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF 380 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 380 (575)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3445555555666666666666666553321 123556666666667777777777766665 2233 46777888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW 421 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 421 (575)
+...|++++|...++++.+..|.++..+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888898888888888888888888888888877765
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.31 E-value=3.2e-06 Score=70.88 Aligned_cols=100 Identities=18% Similarity=0.082 Sum_probs=83.9
Q ss_pred CCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 008183 335 LEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIV 411 (575)
Q Consensus 335 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 411 (575)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3443 455666777888899999999998876 3345 588888899999999999999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHhhC
Q 008183 412 ANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
..+|...|++++|...+++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=4.1e-06 Score=74.65 Aligned_cols=115 Identities=9% Similarity=-0.052 Sum_probs=52.5
Q ss_pred hCCChHHHHH---HHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH----CCCCc-CHHHHHHHHHHHHhcccHH
Q 008183 147 RFRSPDNAKK---VFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS----SDVGS-TMYCVSGALRAAAELAAME 218 (575)
Q Consensus 147 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~ 218 (575)
..|++++|.+ .+..-+.....+++.+...|...|++++|+..|++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 44332222344566666666666666666666666543 11111 1223444444444555555
Q ss_pred HHHHHHHHHHHh----CCC--CchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 219 QCRVIHGHAVVS----GLD--RNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 219 ~a~~~~~~~~~~----g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
+|...+....+. +-. .....+..+...|...|++++|.+.+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 555554444332 101 0122344444455555555555555444
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=4.7e-06 Score=81.27 Aligned_cols=94 Identities=10% Similarity=-0.014 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...|..+...|.+.|++++|...|++. .+.| +...|..+..++...|++++|...++++++++|.+..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 357778888888889999988888877 3445 58889999999999999999999999999999999999999999999
Q ss_pred hCCCchHH-HHHHHHHh
Q 008183 417 GVGRWDEV-AEVRKVMK 432 (575)
Q Consensus 417 ~~g~~~~a-~~~~~~m~ 432 (575)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988 44555553
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.30 E-value=3.6e-06 Score=78.35 Aligned_cols=191 Identities=10% Similarity=-0.032 Sum_probs=115.1
Q ss_pred hcccHHHHHHHHHHHHHhCCCCchhHHHHH-------HHHHHccCCHHHHHHHHhhhCC-CC-------C----------
Q 008183 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGL-------IDGYGKAGIVSDARRVFDENLS-VL-------N---------- 267 (575)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~-~~-------~---------- 267 (575)
..++...|.+.|..+.+.. +.....|..+ ...+.+.++..++...+...+. .| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 3456666666666666653 3344555554 3444444444444444433222 11 1
Q ss_pred -----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hh
Q 008183 268 -----SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG--LE 340 (575)
Q Consensus 268 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 340 (575)
...+-.....+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|... .... .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a-~~~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA-GKWP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG-GGCS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh-hccC-CcccHHH
Confidence 0123345566777888888888887776543 44444444555677788888888888744 2211 111 23
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHH
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM---PFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYV 409 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 409 (575)
.+..+..++.+.|++++|+..|++. +..|. ...+.....++...|+.++|...|+++...+|. ..++.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 5666777888888888888888877 22143 345666777788888888888888888888886 44433
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=6.8e-06 Score=64.93 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPY--DDSAYVIVANV 414 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 414 (575)
...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++..|. +..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 566777888888999999999988876 2333 5788888999999999999999999999999998 88899999999
Q ss_pred HHhC-CCchHHHHHHHHHhhCCC
Q 008183 415 LSGV-GRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 415 ~~~~-g~~~~a~~~~~~m~~~~~ 436 (575)
|... |++++|.+.++.......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999877543
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.29 E-value=9.6e-06 Score=66.43 Aligned_cols=113 Identities=9% Similarity=-0.052 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008183 304 YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF 380 (575)
Q Consensus 304 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 380 (575)
..+..+...+...|++++|...+++... ..| +...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4444455555555555555555554421 223 3455555556666666666666666554 2223 46677777788
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 419 (575)
+...|++++|...++++.+..|.+...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888888888877777777777776655
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.26 E-value=9.5e-06 Score=72.25 Aligned_cols=150 Identities=16% Similarity=0.001 Sum_probs=64.0
Q ss_pred cCCHHHHHH---HHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 008183 249 AGIVSDARR---VFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMR----GFAP-DEYSFLAVLTALCNAGLAG 320 (575)
Q Consensus 249 ~g~~~~A~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 320 (575)
.|++++|.+ .+.. -+......++.+...|...|++++|+..|++.... |..| ...++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555 3322 22223344555555555555555555555554331 1111 1234444455555556666
Q ss_pred HHHHHHHHHHHhcCCCC-C----hhHHHHHHHHHhccCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCh
Q 008183 321 ESEKWIERMKVRYKLEP-G----LEHYTCLISAMGRAGRLEDAERIAMAM----PFEPD----AAVWRALLSFSAIHGKA 387 (575)
Q Consensus 321 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 387 (575)
+|...+.+......-.+ + ...+..+...+...|++++|...+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 65555554422211111 1 223444444445555555554444433 00011 12234444444555555
Q ss_pred HHHHHHHHHHHh
Q 008183 388 DMASKMGKRLID 399 (575)
Q Consensus 388 ~~a~~~~~~~~~ 399 (575)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.24 E-value=1.8e-05 Score=67.68 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHh
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMA 364 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~ 364 (575)
..+..+...+...|++++|...|++
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344444444444444444444443
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.22 E-value=9.3e-07 Score=78.97 Aligned_cols=172 Identities=8% Similarity=-0.023 Sum_probs=98.5
Q ss_pred HHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC
Q 008183 241 GLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGF-APDEYSFLAVLTALCNAG 317 (575)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g 317 (575)
..+......|+++++.+.++.... ......|..+...+...|++++|+..|++..+... .|+.. ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~-------- 77 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD---DQ-------- 77 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC---CH--------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc---hh--------
Confidence 344445556666666666654111 12334566666667777777777777777665321 11000 00
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 008183 318 LAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGK 395 (575)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 395 (575)
..+.- ...+ ....|..+...|.+.|++++|...+++. ...| +...|..+..++...|++++|...++
T Consensus 78 ~~~~~---~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDK---KKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHH---HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHH---HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00000 0000 1256667777788888888888888776 3344 57888889999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHhCCCchHHH-HHHHHHhhC
Q 008183 396 RLIDINPYDDSAYVIVANVLSGVGRWDEVA-EVRKVMKDR 434 (575)
Q Consensus 396 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 434 (575)
++++..|.+..++..+..++...++.+++. ..+..|...
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999989999998888887777766 455555443
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=8.3e-06 Score=66.52 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 417 (575)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++.+|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44556666777778888887777765 3334 477788888888888888888888888888888888888888888888
Q ss_pred CCCchHHHHHHHHHhhC
Q 008183 418 VGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 418 ~g~~~~a~~~~~~m~~~ 434 (575)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888888877653
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.20 E-value=6.6e-06 Score=71.73 Aligned_cols=116 Identities=9% Similarity=0.056 Sum_probs=70.5
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCh--HH
Q 008183 316 AGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSF-SAIHGKA--DM 389 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~ 389 (575)
.|++++|...+...... .| +...|..+...|...|++++|...|++. ...| +...|..+... +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34555555555544322 22 3455555666666666666666666554 2223 45566666666 5566776 77
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
|...++++++.+|.++.++..+..+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776654
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=1.3e-05 Score=75.94 Aligned_cols=191 Identities=9% Similarity=-0.039 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHH
Q 008183 201 MYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGY 278 (575)
Q Consensus 201 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~ 278 (575)
...+..+...+...|++++|...+...++.. +.+...+..+...|.+.|++++|.+.+++++. +.+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445556666667777777777777776653 44677888888888899999999999888555 45677888888899
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDE-YSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
...|++++|+..|++..+.. |+. ..+...+....+ ...+... ... .......+......+... ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~-~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSI-EERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHH-HHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHH-HHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 99999999999998876542 111 011111111111 1112222 122 222344455444444333 2688999
Q ss_pred HHHHHHhC-CCCCCHH-HHHHHHHHHHHc-CChHHHHHHHHHHHhcC
Q 008183 358 AERIAMAM-PFEPDAA-VWRALLSFSAIH-GKADMASKMGKRLIDIN 401 (575)
Q Consensus 358 A~~~~~~m-~~~p~~~-~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 401 (575)
|.+.+++. ...|+.. ....+...+.+. +.+++|.++|.++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99888776 5567643 334444444444 56888999998887643
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.20 E-value=0.0016 Score=62.71 Aligned_cols=174 Identities=8% Similarity=-0.060 Sum_probs=111.7
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcc-C
Q 008183 174 VGFAQNSRLVDSLSVFADMRSSDVGSTM-YCVSGALRAAAELA-AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKA-G 250 (575)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g 250 (575)
....+.+..++|++++.++... .|+. ..|+.--..+...+ .++++..+++.++... +.+..+++.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 3334455567888888888764 4543 34555555555666 5888888888887764 55667777766666665 6
Q ss_pred -CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-
Q 008183 251 -IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQS--------TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL- 318 (575)
Q Consensus 251 -~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 318 (575)
++++++++++.++. ++|..+|+--.-.+.+.|.++ ++++.++++.+..+. |...++.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 77888888888555 556777776555555555555 778888887776443 66667666666666654
Q ss_pred ------HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCC
Q 008183 319 ------AGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGR 354 (575)
Q Consensus 319 ------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 354 (575)
++++.+++.+.... .|+ ...|+-+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 56666666655432 343 5566555555555444
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.18 E-value=4.3e-05 Score=71.15 Aligned_cols=180 Identities=12% Similarity=-0.037 Sum_probs=93.0
Q ss_pred hCCChHHHHHHHHhcCC--C-CcchHHHH-------HHHHHhCCCchHHHHHHHHhHHCCCCcCH---------------
Q 008183 147 RFRSPDNAKKVFDEIRE--R-DVVCYGAM-------IVGFAQNSRLVDSLSVFADMRSSDVGSTM--------------- 201 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 201 (575)
..++.+.|.+.|.+..+ | ....|+-+ ...+.+.++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888887754 2 44567766 3444444445555555544432 23321
Q ss_pred -------HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCCh----hh
Q 008183 202 -------YCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNS----IA 270 (575)
Q Consensus 202 -------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~ 270 (575)
.........+...|++++|.+++..+...+ |+......+...+.+.+++++|+..|+.....++. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 112223344455556666665555554432 22224444555666666666666666653332221 24
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD--EYSFLAVLTALCNAGLAGESEKWIERMK 330 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 330 (575)
+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555556666666666666665553222133 1233344444555666666666666553
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=5.4e-06 Score=67.28 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=81.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|.++.++..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4455667788899999999999887 3455 5888999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhC
Q 008183 419 GRWDEVAEVRKVMKDR 434 (575)
Q Consensus 419 g~~~~a~~~~~~m~~~ 434 (575)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 146
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.00024 Score=68.42 Aligned_cols=215 Identities=12% Similarity=0.055 Sum_probs=154.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC-CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHc-C-ChHHHHH
Q 008183 215 AAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG-IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQ-G-DQSTVLE 289 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~-g-~~~~A~~ 289 (575)
...++|.++++.++... +-+..+++.--..+...| .+++++++++.++. +.+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34457888888888875 556677888777788888 59999999998554 66788899887777776 7 8999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCC-------
Q 008183 290 LFHLLEMRGFAPDEYSFLAVLTALCNAGLAG--------ESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGR------- 354 (575)
Q Consensus 290 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------- 354 (575)
+++++.+...+ |..+++.-...+.+.+..+ ++.++++++.... .-|...|+-....+.+.++
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHH
Confidence 99999876433 6677766555555555554 8888888885442 2357778877777777776
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhcC------CCCch
Q 008183 355 LEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKA--------------------DMASKMGKRLIDIN------PYDDS 406 (575)
Q Consensus 355 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~ 406 (575)
++++++.+++. ...| |...|+-+-..+.+.|+. .........+.... +..+.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 68888888776 4455 688898887777776654 22233333333322 34555
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+...|+++|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 778899999999999999999999864
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.16 E-value=5.7e-05 Score=60.71 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
.|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33333444444444444444444443321 113333344444444444444444444433
No 148
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.14 E-value=5e-05 Score=64.13 Aligned_cols=94 Identities=12% Similarity=-0.023 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHH
Q 008183 203 CVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQ 280 (575)
Q Consensus 203 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~ 280 (575)
.+..+...+.+.|++++|...|+.+++.. +.+...+..+..+|.+.|++++|.+.|++++. +.+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 45555566666677777777777766654 44566666677777777777777777766433 4455666667777777
Q ss_pred cCChHHHHHHHHHHHHc
Q 008183 281 QGDQSTVLELFHLLEMR 297 (575)
Q Consensus 281 ~g~~~~A~~l~~~m~~~ 297 (575)
.|++++|+..|++..+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766664
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.14 E-value=1e-05 Score=69.59 Aligned_cols=94 Identities=9% Similarity=0.037 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSG 417 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 417 (575)
..+..+...+.+.|++++|...|++. .+.| +...|..+..++...|++++|+..++++++++|.+..+|..+..+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44455555555566666666655554 2233 455666666666666666666666666666666666666666666666
Q ss_pred CCCchHHHHHHHHHhh
Q 008183 418 VGRWDEVAEVRKVMKD 433 (575)
Q Consensus 418 ~g~~~~a~~~~~~m~~ 433 (575)
.|++++|...+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6666666666666554
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.14 E-value=2.2e-05 Score=64.87 Aligned_cols=97 Identities=8% Similarity=-0.024 Sum_probs=78.6
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 415 (575)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++.++..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777777788888888888887765 3334 4778888888888889999999999999888888888888899999
Q ss_pred HhCCCchHHHHHHHHHhhC
Q 008183 416 SGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~~ 434 (575)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999888887653
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.13 E-value=0.0011 Score=63.36 Aligned_cols=192 Identities=10% Similarity=-0.004 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC--CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCC-hHHHHHHH
Q 008183 217 MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG--IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGD-QSTVLELF 291 (575)
Q Consensus 217 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~l~ 291 (575)
++++..++..++... +.+..+|+.-...+.+.| .++++.++++.++. +.|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777777654 556777777767777777 47888888877544 6677788777777777777 47888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhcc----
Q 008183 292 HLLEMRGFAPDEYSFLAVLTALCNA--------------GLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRA---- 352 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~---- 352 (575)
.++.+..+. |...|+.....+... +.++++.+++...... .|+ ...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 888876543 666666555554443 3466777777666432 454 55665554444444
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 353 -------GRLEDAERIAMAM-PFEPDAAVWRALLSFS-----AIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 353 -------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
+.++++.+.++++ .+.||. .|+.+-.+. ...+..++....+.++.+++|....-|..+...
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3456666666665 345542 333222221 124556667777777777777665555554433
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.12 E-value=3.1e-05 Score=67.34 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=93.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH-HhccCCh-
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISA-MGRAGRL- 355 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~- 355 (575)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.... .| +...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45677888888888877653 336677888888888888999998888877433 34 46677777777 7788888
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 356 -EDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 356 -~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
++|...|++. ...| +...|..+...+...|++++|...++++++..|.++..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999888877 3345 47888888999999999999999999999999887654
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.12 E-value=1.9e-05 Score=64.56 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=88.3
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 415 (575)
+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++..|.+..++..+..+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3677888899999999999999999987 4455 6889999999999999999999999999999999999999999999
Q ss_pred HhCCCchHHHHHHHHHhhC
Q 008183 416 SGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 416 ~~~g~~~~a~~~~~~m~~~ 434 (575)
...|++++|...+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.12 E-value=2.4e-05 Score=62.25 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=49.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
.+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++.+..|.++..+..+..+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344444455555555555555444 1122 3445555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHhh
Q 008183 419 GRWDEVAEVRKVMKD 433 (575)
Q Consensus 419 g~~~~a~~~~~~m~~ 433 (575)
|++++|...+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555543
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=3e-05 Score=64.78 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
..+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 33444444444444444444444443 23333 34444444444455555555555555555544444444455555
Q ss_pred HHhCCCchHHHHHHHHHh
Q 008183 415 LSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 415 ~~~~g~~~~a~~~~~~m~ 432 (575)
|...|++++|...+++..
T Consensus 109 ~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555554443
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=8.1e-05 Score=59.08 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFS 381 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 381 (575)
.+..+...+...|++++|...++..... .| +...+..+...+...|++++|...+++. ...| +...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555555566666666666555322 23 3455555666666666666666666554 2233 466777777788
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYVIVANV 414 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 414 (575)
...|++++|...++++.+.+|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888888776666555443
No 157
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.08 E-value=2e-05 Score=66.55 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=44.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCN 315 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 315 (575)
.+..+...+.+.|++++|...|+.++. +.+...|..+..+|...|++++|+..|++...... .+...+..+..++..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 344444455555555555555554222 33444555555555555555555555555544321 133444445555555
Q ss_pred cCCHHHHHHHHHHH
Q 008183 316 AGLAGESEKWIERM 329 (575)
Q Consensus 316 ~g~~~~a~~~~~~m 329 (575)
.|++++|...|+..
T Consensus 102 ~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 102 XGELAEAESGLFLA 115 (148)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555544
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.08 E-value=5.2e-05 Score=61.51 Aligned_cols=91 Identities=4% Similarity=-0.088 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK 248 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 248 (575)
|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3344444444444444444444443321 1123333333333344444444444444433331 2223333333444444
Q ss_pred cCCHHHHHHHHhh
Q 008183 249 AGIVSDARRVFDE 261 (575)
Q Consensus 249 ~g~~~~A~~~~~~ 261 (575)
.|++++|.+.|++
T Consensus 93 ~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 93 LNKHVEAVAYYKK 105 (131)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH
Confidence 4444444444433
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=9.1e-05 Score=61.77 Aligned_cols=110 Identities=13% Similarity=-0.011 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHH
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRA 376 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 376 (575)
...+..+...+...|++++|...|++.. ...|+ ...+..+...|...|++++|...+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4444455555555555555555555442 22344 455556666666677777777666654 2233 4677778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL 415 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 415 (575)
+..++...|++++|...++++++..|.+..++..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888888888888999888888888888776665555544
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.07 E-value=7.1e-06 Score=73.12 Aligned_cols=54 Identities=7% Similarity=0.050 Sum_probs=30.5
Q ss_pred HHHHHhCCChHHHHHHHHhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC
Q 008183 142 VHFYSRFRSPDNAKKVFDEIRE---RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSS 195 (575)
Q Consensus 142 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 195 (575)
+......|+++.|.+.++.-.+ .....|..+...+.+.|++++|+..|++....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455666666666654322 13456777788888899999999999888763
No 161
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.05 E-value=5.1e-05 Score=73.84 Aligned_cols=122 Identities=11% Similarity=-0.076 Sum_probs=60.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC--------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST--------------MYCVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
+...|..+...|.+.|++++|+..|++......... ...+..+..++.+.|++++|...+..+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777778888888888888887766321111 234444444444444444444444444443
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHH
Q 008183 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTV 287 (575)
Q Consensus 231 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 287 (575)
. +.+...+..+..+|...|++++|.+.|++++. +.+...+..+...+.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 22344444444444444444444444444222 22333444444444444444444
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.04 E-value=1.3e-05 Score=65.56 Aligned_cols=94 Identities=9% Similarity=-0.013 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc-------hhHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD-------SAYVI 410 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 410 (575)
..+..+...+.+.|++++|.+.|++. .+.| +...|..+..+|...|++++|+..++++++++|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34555666677777777777777665 3344 366777777777777888888888877777665443 25566
Q ss_pred HHHHHHhCCCchHHHHHHHHHhh
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+..+|...|++++|.+.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777778888888887776554
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.02 E-value=5.1e-05 Score=61.68 Aligned_cols=106 Identities=8% Similarity=-0.085 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFS 381 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 381 (575)
.+..+...+...|++++|...|.+.... .| +...|..+...|.+.|++++|...|++. .+.| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444455555666666666666655322 23 2456666666666666666666666655 2334 366777777777
Q ss_pred HHcCChHHHHHHHHHHHhcC------CCCchhHHHHHH
Q 008183 382 AIHGKADMASKMGKRLIDIN------PYDDSAYVIVAN 413 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 413 (575)
...|++++|...++++++.+ |.+..+...+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 78888888888888888777 655555444443
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.99 E-value=3.7e-05 Score=64.20 Aligned_cols=102 Identities=11% Similarity=-0.048 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008183 305 SFLAVLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFS 381 (575)
Q Consensus 305 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 381 (575)
.+..+...+.+.|++++|...|+..... .| +...|..+...|.+.|++++|...|++. .+.| +...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444555566677777777777666432 34 3556666777777777777777777665 2334 466677778888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCchhHH
Q 008183 382 AIHGKADMASKMGKRLIDINPYDDSAYV 409 (575)
Q Consensus 382 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 409 (575)
...|++++|...++++++..|.++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 8888888888888888888877665443
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.97 E-value=0.001 Score=63.66 Aligned_cols=180 Identities=11% Similarity=0.034 Sum_probs=130.6
Q ss_pred HHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 008183 252 VSDARRVFDENLS--VLNSIAWNAMMAGYAQQGD--QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL-AGESEKWI 326 (575)
Q Consensus 252 ~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 326 (575)
+++++++++.++. +.+..+|+.-.-.+.+.|+ ++++++++..+.+...+ |...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777444 6788899988878888884 89999999999987544 77787777777778887 68999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHhcc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc------
Q 008183 327 ERMKVRYKLEPGLEHYTCLISAMGRA--------------GRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIH------ 384 (575)
Q Consensus 327 ~~m~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------ 384 (575)
..+.... .-|...|+-....+.+. +.++++++.+... ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9886542 23466666655555443 4578888888776 3455 688887665555544
Q ss_pred -----CChHHHHHHHHHHHhcCCCCchhHHHHHHH---HHhCCCchHHHHHHHHHhhC
Q 008183 385 -----GKADMASKMGKRLIDINPYDDSAYVIVANV---LSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 385 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~ 434 (575)
+.++++++.++++++..|++...+..++.. ....|..+++...+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 357899999999999999886555444332 23467777888888888764
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00018 Score=72.56 Aligned_cols=162 Identities=6% Similarity=-0.172 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHH---HHHHHH-HHHHhcCCHHHHHHHHHHHHHh---cCCCCC-hhH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEY---SFLAVL-TALCNAGLAGESEKWIERMKVR---YKLEPG-LEH 341 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~---t~~~ll-~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~ 341 (575)
+..+...|...|++++|.+.+..+... +..++.. .....+ ..+...|+.+.+..++...... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445566666666666666666555432 1111211 111222 2223456777777776655322 112222 456
Q ss_pred HHHHHHHHhccCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC----ch
Q 008183 342 YTCLISAMGRAGRLEDAERIAMAM-----P--FEPD-AAVWRALLSFSAIHGKADMASKMGKRLIDIN---PYD----DS 406 (575)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 406 (575)
+..+...|...|++++|..++++. + .+|. ..++..++..|...|++++|..++++..... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777888888887777655 1 1222 5567777788888888888888887776532 222 13
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666777778888888877766553
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.94 E-value=6.3e-05 Score=76.60 Aligned_cols=95 Identities=9% Similarity=0.056 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..+|...|++++|...++++++++|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467788888899999999999988877 3344 58889999999999999999999999999999999999999999999
Q ss_pred hCCCchHHHH-HHHHHhh
Q 008183 417 GVGRWDEVAE-VRKVMKD 433 (575)
Q Consensus 417 ~~g~~~~a~~-~~~~m~~ 433 (575)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988764 4555543
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.93 E-value=0.00014 Score=62.22 Aligned_cols=90 Identities=14% Similarity=0.023 Sum_probs=36.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNA 316 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 316 (575)
+..+...|.+.|++++|.+.|++.+. +.+...|..+...|.+.|++++|+..|++..+.. +-+...+..+..++...
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33333444444444444444443222 2233334444444444444444444444443331 11233344444444444
Q ss_pred CCHHHHHHHHHHH
Q 008183 317 GLAGESEKWIERM 329 (575)
Q Consensus 317 g~~~~a~~~~~~m 329 (575)
|++++|...|++.
T Consensus 93 g~~~~A~~~~~~a 105 (164)
T 3sz7_A 93 ADYKGAKEAYEKG 105 (164)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4444444444433
No 169
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.93 E-value=9.6e-05 Score=75.31 Aligned_cols=124 Identities=10% Similarity=0.002 Sum_probs=98.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcC--CCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCC-HHHHH
Q 008183 312 ALCNAGLAGESEKWIERMKVRYK--LEPG----LEHYTCLISAMGRAGRLEDAERIAMAM---------PFEPD-AAVWR 375 (575)
Q Consensus 312 a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 375 (575)
.+...|++++|..++++...... +.|+ ..+++.|...|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34578999999988877644321 2232 578889999999999999999888776 34565 67799
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh-----cCCCCch---hHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 376 ALLSFSAIHGKADMASKMGKRLID-----INPYDDS---AYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 376 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
.|...|...|++++|+.+++++++ ++|+++. +...|..++...|++++|+.++.+++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999885 6677765 45577788889999999999999998743
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.0003 Score=70.81 Aligned_cols=162 Identities=9% Similarity=-0.114 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCch----hHHHHHHHHHHccCCHHHHHHHHhhhCC----CC----Chhh
Q 008183 204 VSGALRAAAELAAMEQCRVIHGHAVVSG-LDRNV----IVGTGLIDGYGKAGIVSDARRVFDENLS----VL----NSIA 270 (575)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----~~~~ 270 (575)
+..+...|...|++++|.+.+..+.+.- -.++. .+.+.+-..+...|+.+.|.+++...+. .. -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3344444555555555555444443310 00111 1223333344455667777666655322 11 1245
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc--C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-----hh
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMR--G--FAPD-EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-----LE 340 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g--~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~ 340 (575)
+..+...|...|++++|..++++.... + -.|. ..++..++..|...|++++|..++.+......-.++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777788888888888888776543 1 1222 346777788888899999999888766432211121 35
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5667777788889999888776554
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.91 E-value=0.00016 Score=58.96 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=47.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC----HHHHHHHH
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRG--FAPD----EYSFLAVL 310 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ll 310 (575)
+..+...|.+.|++++|.+.|++++. +.+...|+.+..+|.+.|++++|++.|++..+.. ..++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34455555566666666666655333 3345555555566666666666666655554321 1111 12344445
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 008183 311 TALCNAGLAGESEKWIERM 329 (575)
Q Consensus 311 ~a~~~~g~~~~a~~~~~~m 329 (575)
.++...|++++|.+.|++.
T Consensus 91 ~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555556666666655544
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.87 E-value=0.0001 Score=60.66 Aligned_cols=99 Identities=13% Similarity=-0.067 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 008183 302 DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALL 378 (575)
Q Consensus 302 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 378 (575)
+...+..+...+...|++++|...|...... .|+ ...|..+...|...|++++|...+++. .+.| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4455555555566666666666666655322 232 455666666666666666666666555 2233 466777777
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCC
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPY 403 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~ 403 (575)
.++...|++++|...++++++..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7777778888888888777776655
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.86 E-value=5.4e-05 Score=63.63 Aligned_cols=62 Identities=19% Similarity=0.099 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDI-------NPYDDSAY----VIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
..|..+..++...|++++|+..+++.+++ +|++..+| .....++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 48888888899999999999999999888 99888888 9999999999999999999998764
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.86 E-value=4.8e-05 Score=61.98 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=51.9
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHH
Q 008183 345 LISAMGRAGRLEDAERIAMAM-PFEPD-A---AVWRALLSFSAIHGKADMASKMGKRLIDINPYD---DSAYVIVANVLS 416 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 416 (575)
+...+.+.|++++|...|++. ...|+ . ..+..+..++...|++++|...++++++..|.+ +.++..+..+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334455556666666555554 11222 1 355555666666666666666666666666665 445666666666
Q ss_pred hCCCchHHHHHHHHHhh
Q 008183 417 GVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 417 ~~g~~~~a~~~~~~m~~ 433 (575)
..|++++|...+++..+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666654
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.86 E-value=5.9e-05 Score=61.27 Aligned_cols=95 Identities=8% Similarity=0.074 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------chhHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD-------DSAYVI 410 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 410 (575)
..+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++.+..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777777888888888887776 2233 57788888888889999999999999998877655 668888
Q ss_pred HHHHHHhCCCchHHHHHHHHHhhC
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+..+|...|++++|...+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=1.5e-05 Score=64.05 Aligned_cols=82 Identities=18% Similarity=0.067 Sum_probs=47.4
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHH
Q 008183 352 AGRLEDAERIAMAM-PF---EP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAE 426 (575)
Q Consensus 352 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 426 (575)
.|++++|...|++. .. .| +...|..+...+...|++++|...++++++..|.++.++..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555554 22 13 245556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 008183 427 VRKVMKD 433 (575)
Q Consensus 427 ~~~~m~~ 433 (575)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.84 E-value=3.9e-05 Score=78.55 Aligned_cols=114 Identities=12% Similarity=0.010 Sum_probs=81.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 008183 313 LCNAGLAGESEKWIERMKVRYKLEPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 389 (575)
+.+.|++++|.+.+++.... .|+ ...|..+...|.+.|++++|.+.+++. .+.| +..+|..+..+|...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44567777777777766432 343 567777777777777777777777766 3445 47778888888888888888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHH--HHhCCCchHHHHHHH
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANV--LSGVGRWDEVAEVRK 429 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 429 (575)
|.+.++++++..|.+..++..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888887777777776 778888888888877
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.83 E-value=0.00013 Score=61.64 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHH
Q 008183 407 AYVIVANVLSGVGRWDEVAEVRKVM 431 (575)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~m 431 (575)
++..+...|...|++++|.+.+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444555555555555555555443
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.82 E-value=6.3e-05 Score=64.35 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
...|..+..++...|++++|...++++++++|.++.+|..+..+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4677778888888888888888888888888888888888888888888888888888877654
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.80 E-value=0.00018 Score=60.77 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----h
Q 008183 269 IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFA-PD----EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPG----L 339 (575)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 339 (575)
.++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++......-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46788888999999999999999988654211 12 146778888899999999999999987443211122 4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-------PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINP 402 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 402 (575)
..+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++.++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56778888999999999999988776 1111 145678888899999999999999999877544
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.80 E-value=0.00023 Score=55.82 Aligned_cols=91 Identities=13% Similarity=-0.023 Sum_probs=39.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 008183 238 VGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP--DEYSFLAVLTAL 313 (575)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~ 313 (575)
.+..+...|.+.|++++|...|++++. +.+...|..+...|...|++++|+..|++..+.. +. +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 334444444444455554444444222 2233344444444444444444444444444321 11 233444444444
Q ss_pred Hhc-CCHHHHHHHHHHH
Q 008183 314 CNA-GLAGESEKWIERM 329 (575)
Q Consensus 314 ~~~-g~~~~a~~~~~~m 329 (575)
... |++++|.+.+...
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARA 103 (112)
T ss_dssp TTCSSCSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 444 4444444444443
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.80 E-value=0.00036 Score=56.58 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=59.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-h---hHHHHHHHHHhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPG-L---EHYTCLISAMGRAGRLEDAERIAMAM-PFEPD----AAVWRALLSF 380 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 380 (575)
...+...|++++|...|+..... .|+ . ..+..+...|.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33445556666666666655332 222 1 35555666666666777666666655 22232 4566677777
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCchhH
Q 008183 381 SAIHGKADMASKMGKRLIDINPYDDSAY 408 (575)
Q Consensus 381 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 408 (575)
+...|++++|...++++++..|.++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 8888888888888888888888765543
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.77 E-value=0.00013 Score=58.88 Aligned_cols=93 Identities=17% Similarity=0.031 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHG 385 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 385 (575)
+...+.+.|++++|...+++.... .| +...|..+...+...|++++|...|++. .+.| +...|..+..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455556666666666655322 34 3455555666666666666666666555 3344 3556666667777777
Q ss_pred ChHHHHHHHHHHHhcCCCC
Q 008183 386 KADMASKMGKRLIDINPYD 404 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~p~~ 404 (575)
++++|...++++++.+|.+
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 7777777777777766654
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.76 E-value=0.00028 Score=57.12 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008183 272 NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 272 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 329 (575)
..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333344444444444444444443331 113333333444444444444444444433
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.76 E-value=0.00018 Score=70.81 Aligned_cols=88 Identities=11% Similarity=0.008 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...|..+...|.+.|++++|.+.+++. .+.| +...|..+..+|...|++++|...+++++++.|.+..++..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 577888889999999999999999887 5566 48889999999999999999999999999999999888888888888
Q ss_pred hCCCchHHHH
Q 008183 417 GVGRWDEVAE 426 (575)
Q Consensus 417 ~~g~~~~a~~ 426 (575)
..++.+++.+
T Consensus 353 ~~~~~~~a~k 362 (370)
T 1ihg_A 353 KIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.74 E-value=0.0021 Score=67.00 Aligned_cols=168 Identities=8% Similarity=-0.028 Sum_probs=125.6
Q ss_pred HHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 008183 252 VSDARRVFDENLS--VLNSIAWNAMMAGYAQQGD----------QSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAG-- 317 (575)
Q Consensus 252 ~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 317 (575)
-++|.+.++.++. +.+...|+.--..+...|+ ++++++.++.+.+...+ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3566777776443 4455667766666666666 78888888888876544 6677777777777778
Q ss_pred CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---------
Q 008183 318 LAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAG-RLEDAERIAMAM-PFEP-DAAVWRALLSFSAIH--------- 384 (575)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------- 384 (575)
+++++.+.++++... .| +...|+.-...+.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 678888888888543 34 4666776666677777 788888888887 4455 578888877777663
Q ss_pred -----CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchH
Q 008183 385 -----GKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDE 423 (575)
Q Consensus 385 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 423 (575)
+.++++.+.+.+++..+|.+..+|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888555
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.63 E-value=0.00043 Score=70.77 Aligned_cols=115 Identities=11% Similarity=-0.022 Sum_probs=61.0
Q ss_pred HHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008183 245 GYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGES 322 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 322 (575)
.|.+.|++++|.+.|++++. +.+..+|..+..+|.+.|++++|++.|++..+.. +.+..++..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455666666666655333 3345556666666666666666666666665542 12445566666666666666666
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHH--HhccCChHHHHHHHH
Q 008183 323 EKWIERMKVRYKLEPG-LEHYTCLISA--MGRAGRLEDAERIAM 363 (575)
Q Consensus 323 ~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 363 (575)
.+.+++.... .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666655332 232 2333333333 556666666666665
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.63 E-value=0.0001 Score=71.79 Aligned_cols=147 Identities=9% Similarity=-0.007 Sum_probs=81.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345667777788888999999988887764 344332 222333333332211 136778888
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhCCCchHH
Q 008183 348 AMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVL-SGVGRWDEV 424 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 424 (575)
.|.+.|++++|...+++. .+.| +...|..+..+|...|++++|...++++++++|.+..++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988876 3445 5888899999999999999999999999999998888888777773 345566777
Q ss_pred HHHHHHHhhC
Q 008183 425 AEVRKVMKDR 434 (575)
Q Consensus 425 ~~~~~~m~~~ 434 (575)
..+++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7788777654
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=2.2e-05 Score=62.01 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------chhHH
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD------DSAYV 409 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 409 (575)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|.+ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456677778888888888888888776 3344 57888889999999999999999999999999987 66677
Q ss_pred HHHHHHHhCCCchHHHHHHH
Q 008183 410 IVANVLSGVGRWDEVAEVRK 429 (575)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~ 429 (575)
.+..++...|+++.|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777666655443
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.61 E-value=5.8e-05 Score=60.55 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CCC-hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 008183 316 AGLAGESEKWIERMKVRYKL-EPG-LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMAS 391 (575)
Q Consensus 316 ~g~~~~a~~~~~~m~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 391 (575)
.|++++|...|++.. +.+. .|+ ...+..+...|.+.|++++|...|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666653 2110 232 456667777777777777777777766 3344 4777778888888888888888
Q ss_pred HHHHHHHhcCCCCchh
Q 008183 392 KMGKRLIDINPYDDSA 407 (575)
Q Consensus 392 ~~~~~~~~~~p~~~~~ 407 (575)
..+++.++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877653
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.58 E-value=0.00019 Score=61.29 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 467778888888999999999888776 3455 488899999999999999999999999999999876
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.55 E-value=0.00064 Score=69.12 Aligned_cols=122 Identities=7% Similarity=-0.077 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcC--------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008183 165 DVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGST--------------MYCVSGALRAAAELAAMEQCRVIHGHAVVS 230 (575)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (575)
....|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.+++++|...+..+++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344677788888999999999999998876321110 234444444444444444444444444443
Q ss_pred CCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHH
Q 008183 231 GLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTV 287 (575)
Q Consensus 231 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 287 (575)
. +.+...+..+..+|.+.|++++|...|++++. +.+...|..+...+.+.++.++|
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 22344444444444444444444444444322 22333444444444444444433
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.55 E-value=0.00019 Score=60.22 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=50.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM--------PFEPD-AAVW----RALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|++.+++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555555566666666655555443 34786 6778 899999999999999999999999999887654
Q ss_pred H
Q 008183 408 Y 408 (575)
Q Consensus 408 ~ 408 (575)
+
T Consensus 139 ~ 139 (159)
T 2hr2_A 139 T 139 (159)
T ss_dssp C
T ss_pred H
Confidence 3
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.50 E-value=0.00045 Score=53.47 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+...|..+...+...|++++|...++++++.+|.++.+|..+..+|...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999999988764
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.00031 Score=55.91 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=62.9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 357 DAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 357 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
+|...|++. ...| +...|..+...+...|++++|...++++++.+|.+..+|..+..+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555544 3445 4788888888899999999999999999999998888899999999999999999999888765
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.49 E-value=0.00035 Score=67.91 Aligned_cols=150 Identities=11% Similarity=0.051 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHhhhCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008183 236 VIVGTGLIDGYGKAGIVSDARRVFDENLS-VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALC 314 (575)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 314 (575)
...+..+...|.+.|++++|...|++++. .|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677888899999999999999998554 232221 122333333332221 136677777888
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HHcCChHHH
Q 008183 315 NAGLAGESEKWIERMKVRYKLEP-GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPD-AAVWRALLSFS-AIHGKADMA 390 (575)
Q Consensus 315 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~-~~~g~~~~a 390 (575)
+.|++++|...++..... .| +...|..+..+|...|++++|...|++. .+.|+ ...+..|.... ...+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999988877432 45 4678888888999999999999999887 45564 44555555442 344567778
Q ss_pred HHHHHHHHhcCCCCc
Q 008183 391 SKMGKRLIDINPYDD 405 (575)
Q Consensus 391 ~~~~~~~~~~~p~~~ 405 (575)
...+.++.+..|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888888888877654
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.00073 Score=50.69 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008183 339 LEHYTCLISAMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLS 416 (575)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 416 (575)
...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455666777777788888888877766 2234 57778888888888899999999999998888888888887777776
Q ss_pred hCC
Q 008183 417 GVG 419 (575)
Q Consensus 417 ~~g 419 (575)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.26 E-value=0.0026 Score=62.52 Aligned_cols=60 Identities=13% Similarity=-0.075 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008183 237 IVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEM 296 (575)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 296 (575)
.++..+..+|.+.|++++|.+.+++++. +.+...|..+..+|...|++++|+..|++..+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444555555555555555555554333 22344444455555555555555555555444
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.25 E-value=0.00077 Score=68.64 Aligned_cols=62 Identities=10% Similarity=-0.087 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-----cCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEM-----RGF-APDEY-SFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
+++.|...|...|++++|+.++++..+ .|. .|+.. +...+-.++...+.+++|+..+..+++
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544432 121 22222 233333444456666666666666644
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.22 E-value=0.005 Score=50.77 Aligned_cols=106 Identities=8% Similarity=-0.100 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHH----cCChHHHHHHH
Q 008183 216 AMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQ----QGDQSTVLELF 291 (575)
Q Consensus 216 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~ 291 (575)
+.++|.+.+....+.| .++.. |..+|...+.+++|.+.|++.....+..++..|...|.. .+++++|++.|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4455555555555554 22222 455555555555566666554445555555555555555 55666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 008183 292 HLLEMRGFAPDEYSFLAVLTALCN----AGLAGESEKWIERM 329 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m 329 (575)
++..+.| +...+..|-..|.. .++.++|..+|+..
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 6665543 34444455555555 55666666666655
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.18 E-value=0.008 Score=49.50 Aligned_cols=112 Identities=7% Similarity=-0.085 Sum_probs=88.4
Q ss_pred CCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc----cCCHHHH
Q 008183 180 SRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGK----AGIVSDA 255 (575)
Q Consensus 180 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 255 (575)
+++++|++.|++..+.| .|+.. +-..+.....+++|.+.+....+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788899998888877 34333 5555666677888888888888875 56777888888887 7889999
Q ss_pred HHHHhhhCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCC
Q 008183 256 RRVFDENLSVLNSIAWNAMMAGYAQ----QGDQSTVLELFHLLEMRGF 299 (575)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 299 (575)
.+.|++.....+..++..|...|.. .++.++|.+.|++..+.|.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999886677788888888888888 7889999999988887764
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.18 E-value=0.0014 Score=65.67 Aligned_cols=116 Identities=15% Similarity=0.089 Sum_probs=85.6
Q ss_pred HHHHhccCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCch---h
Q 008183 346 ISAMGRAGRLEDAERIAMAM---------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLID-----INPYDDS---A 407 (575)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~ 407 (575)
+..+.+.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|.++. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778889998888765 12233 56789999999999999999999998885 4565554 6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 008183 408 YVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECE 479 (575)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 479 (575)
++.|...|...|++++|..++++..+--.. .-...||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999877642100 112357777777777777666665
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.16 E-value=0.0029 Score=48.01 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 369 PDAAVWRALLSFSAIHGK---ADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 369 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
+|+..+..+..++...++ .++|..+++++++.+|.++.+...+...+...|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467788888888865555 79999999999999999999999999999999999999999999988754
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0017 Score=50.71 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 369 PDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 369 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
++...|..+...+...|++++|...++++++..|.++.++..+..+|...|++++|...+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3567788899999999999999999999999999999999999999999999999999999987653
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.08 E-value=0.00028 Score=59.16 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=66.0
Q ss_pred ccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCchhHHHHHHHHHhC
Q 008183 351 RAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGK----------ADMASKMGKRLIDINPYDDSAYVIVANVLSGV 418 (575)
Q Consensus 351 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 418 (575)
+.+.+++|.+.+++. .+.| +...|..+..++...++ +++|+..++++++++|.+..+|..+.++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666655 3344 46666666666666654 56999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHhhCC
Q 008183 419 G-----------RWDEVAEVRKVMKDRR 435 (575)
Q Consensus 419 g-----------~~~~a~~~~~~m~~~~ 435 (575)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999888753
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.0014 Score=65.65 Aligned_cols=83 Identities=10% Similarity=0.023 Sum_probs=66.9
Q ss_pred ccCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCch---hHHHHH
Q 008183 351 RAGRLEDAERIAMAM---------PFEPD-AAVWRALLSFSAIHGKADMASKMGKRLID-----INPYDDS---AYVIVA 412 (575)
Q Consensus 351 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~ 412 (575)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|.++. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888888887665 23344 57789999999999999999999999885 4565554 688899
Q ss_pred HHHHhCCCchHHHHHHHHHhh
Q 008183 413 NVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987764
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.97 E-value=0.0043 Score=62.04 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=72.3
Q ss_pred hcCCHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 008183 315 NAGLAGESEKWIERMKVRY--KLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM---------PFEPD-AAVWRALL 378 (575)
Q Consensus 315 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll 378 (575)
..|++++|..++++..... -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578888888887764432 23333 477888999999999999999888776 34565 66799999
Q ss_pred HHHHHcCChHHHHHHHHHHHh-----cCCCCchh
Q 008183 379 SFSAIHGKADMASKMGKRLID-----INPYDDSA 407 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 407 (575)
..|...|++++|+.+++++++ ++|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999885 56777654
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0074 Score=60.37 Aligned_cols=100 Identities=14% Similarity=-0.018 Sum_probs=76.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHhccCChHHHHHHHHhC---------CCCCC-HH
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRY--KLEPG----LEHYTCLISAMGRAGRLEDAERIAMAM---------PFEPD-AA 372 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~ 372 (575)
.+..+...|++++|..++++..... -+.|+ ..+++.|...|...|++++|+.++++. +..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667788999998888774332 12333 467888899999999999999888766 34565 66
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCchhH
Q 008183 373 VWRALLSFSAIHGKADMASKMGKRLID-----INPYDDSAY 408 (575)
Q Consensus 373 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 408 (575)
+++.|...|...|++++|+.+++++++ ++|+++.+-
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 799999999999999999999999885 678777653
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.90 E-value=0.0024 Score=53.46 Aligned_cols=97 Identities=16% Similarity=0.068 Sum_probs=64.9
Q ss_pred hcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCC----------HHHHHHHHhhhCC--CCChhhHHHHHHHHHH
Q 008183 213 ELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGI----------VSDARRVFDENLS--VLNSIAWNAMMAGYAQ 280 (575)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~--~~~~~~~~~li~~~~~ 280 (575)
+.+.+++|.+.++..++.. +.+...++.+..++...++ +++|+..|++++. +.+..+|+.+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455666666666666654 4566666666666666655 4578888877554 4566778888888877
Q ss_pred cC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008183 281 QG-----------DQSTVLELFHLLEMRGFAPDEYSFLAVLTA 312 (575)
Q Consensus 281 ~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 312 (575)
.| ++++|++.|++..+ +.|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 64 78888888888877 46666666555543
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.89 E-value=0.0034 Score=46.85 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+...|..+...+...|++++|...+++.++..|.++.++..+..+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999988764
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.84 E-value=0.0042 Score=49.07 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
+...+..+...|...|++++|.+.|++.+. +.+...|..+...|...|++++|...|++..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444555555555555555544222 2233344444444444444444444444443
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.75 E-value=0.075 Score=55.25 Aligned_cols=128 Identities=10% Similarity=-0.049 Sum_probs=63.2
Q ss_pred chHHHHHHHHhHHCCCCcCH-HHHHHHHHHHHhccc----------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 182 LVDSLSVFADMRSSDVGSTM-YCVSGALRAAAELAA----------MEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
.++|++.++++... .|+. ..|+.--.++...++ ++++...++.+++.. +-+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34556666666553 3332 233333333333333 555555555555543 344555555555555555
Q ss_pred --CHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008183 251 --IVSDARRVFDENLS--VLNSIAWNAMMAGYAQQG-DQSTVLELFHLLEMRGFAPDEYSFLAVLTAL 313 (575)
Q Consensus 251 --~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 313 (575)
+++++.+.++++++ +.|..+|+.-...+.+.| .++++++.+.++.+..+. |...|+.....+
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll 188 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 188 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHH
Confidence 44666666655333 445555555555555555 555555555555544322 444444443333
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.74 E-value=0.15 Score=40.55 Aligned_cols=141 Identities=12% Similarity=0.142 Sum_probs=104.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
+.-.|..++..++..+.... .+..-||.+|--....-+-+-..+.++.+-.-+ | ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHH
Confidence 44567788888888777664 255566666655555666666677776663222 2 235677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 358 AERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 358 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
....+-.++ .+.......+......|+-++-.+++..++..+++++....-+.++|.+.|+..+|.+++.+..++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 777777664 344556677888899999999999999987777888999999999999999999999999999999986
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.71 E-value=0.0088 Score=45.91 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 235 NVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLNSIAWNAMMAGYAQQGDQSTVLELFHLLE 295 (575)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 295 (575)
+...+..+...|.+.|++++|.+.|++++. +.+...|..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555554332 2234445555555555555555555554443
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.61 E-value=0.074 Score=51.12 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 338 GLEHYTCLISAMGRAGRLEDAERIAMAM-PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
+..+|.++...+...|++++|...+++. .+.|+...|..+...+.-.|++++|.+.++++..++|..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3555666555555556666666666665 344666666556666666666777766666666666644
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.31 E-value=0.13 Score=55.98 Aligned_cols=102 Identities=11% Similarity=0.089 Sum_probs=58.8
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 222 (575)
......|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34456677777777766553 456777777777777777777777777643 3444444444555555444
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
+-+.....| -++....+|.+.|++++|.+++.+
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444433 123334445555666666555554
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.17 E-value=0.024 Score=43.04 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=50.5
Q ss_pred HHHHHhccCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhH
Q 008183 345 LISAMGRAGRLEDAERIAMAM-PFEP-DAA-VWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAY 408 (575)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 408 (575)
....+.+.|++++|...|++. ...| +.. .|..+..++...|++++|...++++++.+|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345567788888888888776 3345 466 888888888899999999999999999999887765
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.13 E-value=0.013 Score=44.56 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=53.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhCCCchHHHHHHHHHhhCC
Q 008183 377 LLSFSAIHGKADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDEVAEVRKVMKDRR 435 (575)
Q Consensus 377 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 435 (575)
....+...|++++|...++++++.+|.++. ++..+..+|...|++++|...+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455677899999999999999999999999 99999999999999999999999988654
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.10 E-value=0.12 Score=56.45 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=53.7
Q ss_pred HHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008183 245 GYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEK 324 (575)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 324 (575)
....+|++++|.++.+. + .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...+
T Consensus 661 ~~l~~~~~~~A~~~~~~-~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-E--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hhhhcCCHHHHHHHHHh-h--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34556777777776655 3 3445677777777777777777777766542 1123333333555554444
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 325 WIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 325 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
+-+.. ...| -++.-...|.+.|++++|.+++.++
T Consensus 729 ~~~~a-~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDA-ETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHH-HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHH-HHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33322 2111 1223333445556666666655554
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.59 Score=39.59 Aligned_cols=102 Identities=8% Similarity=0.016 Sum_probs=70.9
Q ss_pred HHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHH
Q 008183 143 HFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRV 222 (575)
Q Consensus 143 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 222 (575)
+...++|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788999998888776 3667899999999999999999999888754 5555555666677666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhh
Q 008183 223 IHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDE 261 (575)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (575)
+-+.....| -++.....+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444443 134444455566777777777766
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.52 E-value=0.32 Score=46.74 Aligned_cols=73 Identities=11% Similarity=0.022 Sum_probs=43.5
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH
Q 008183 265 VLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHY 342 (575)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 342 (575)
+.+...|.++...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++.. .+.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChH
Confidence 4455566665555555667777777776666654 566555555555666677777766666542 234554443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.42 E-value=0.098 Score=43.19 Aligned_cols=65 Identities=3% Similarity=-0.122 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 369 PDAAVWRALLSFSAIHG---KADMASKMGKRLIDIN-P-YDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 369 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
++..+.-.+..++.+.+ +.+++..+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55666666666666666 4557777777777766 4 2344666677777777777777777777765
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.15 E-value=0.11 Score=40.00 Aligned_cols=71 Identities=17% Similarity=0.038 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 340 EHYTCLISAMGRAGRLEDAERIAMAM-----P----FEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
.-+-.|...+.+.|+++.|..+|+.. + -.+....+..|..++.+.|+++.|...++++.++.|.+..+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445555555666666666555543 0 12346778889999999999999999999999999988765433
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.93 E-value=0.13 Score=38.74 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=52.4
Q ss_pred CChhHHHHHHHHHhccCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 008183 337 PGLEHYTCLISAMGRAGR---LEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDD 405 (575)
Q Consensus 337 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 405 (575)
.+...+..+..++...++ .++|..+|++. ...| ++..+..+...+...|++++|...|+++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 346666777776654443 68888888877 4456 477888888888999999999999999999888743
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.82 E-value=0.1 Score=48.06 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=68.5
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhC-CCchH
Q 008183 355 LEDAERIAMAM-PFEPD---AAVWRALLSFSAI-----HGKADMASKMGKRLIDINPYD-DSAYVIVANVLSGV-GRWDE 423 (575)
Q Consensus 355 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 423 (575)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|++.|+++++++|.. ..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554 45666 5678888888888 499999999999999999964 88999999999885 99999
Q ss_pred HHHHHHHHhhCCCccCC
Q 008183 424 VAEVRKVMKDRRVRKEG 440 (575)
Q Consensus 424 a~~~~~~m~~~~~~~~~ 440 (575)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999887665334
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.95 E-value=6.9 Score=40.70 Aligned_cols=251 Identities=10% Similarity=0.028 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhccc
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAA 216 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 216 (575)
.-+.-+..+++.+++......+.. +..+...-.....+....|+..+|......+-..|- ........++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 334455556666777776665554 322444444455666667776666666666544432 222234444444443332
Q ss_pred HHH--HHHHHHHHHHhC-----------CCCch-hHHHHHHHHHHccCCHHHHHHHHhhhCCCCChh---hHHHHHHHHH
Q 008183 217 MEQ--CRVIHGHAVVSG-----------LDRNV-IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSI---AWNAMMAGYA 279 (575)
Q Consensus 217 ~~~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~li~~~~ 279 (575)
+.. ..+=+..+...| ++++. .....++..+.+-..+ ...... . .++.. .+..-+.-+.
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~-~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFART-T-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHH-S-CCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhc-c-CCChhhHHHHHHHHHHHH
Confidence 211 111111111111 11221 1222333333322222 122221 1 11111 1111222333
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCCh
Q 008183 280 QQGDQSTVLELFHLLEMRGFAPDEYSFLAVLT----ALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRL 355 (575)
Q Consensus 280 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 355 (575)
+ .+++.|..+|....+.+. .+......+-. .....+...++...+...... .++.....-.+..-.+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 377888888888765432 23322222222 223334244555556554221 23333333344444567899
Q ss_pred HHHHHHHHhCCCCC-C-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008183 356 EDAERIAMAMPFEP-D-AAVWRALLSFSAIHGKADMASKMGKRLID 399 (575)
Q Consensus 356 ~~A~~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 399 (575)
+.|...|+.|+-.+ + ....-=+..++...|+.++|..+++.+.+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999998885332 2 32223345566778888888888888865
No 227
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.58 E-value=4.8 Score=37.66 Aligned_cols=168 Identities=9% Similarity=0.046 Sum_probs=102.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHH
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLEL----FHLLEMRGFAPDEYSFLAVLTALC 314 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 314 (575)
|.++..=|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.+++++......++..+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ------------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44555668888999999998876 33456677887777665 444556689999988888887765
Q ss_pred hcCCHH-HHHHHHHHHH---HhcCC--CCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---C
Q 008183 315 NAGLAG-ESEKWIERMK---VRYKL--EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIH---G 385 (575)
Q Consensus 315 ~~g~~~-~a~~~~~~m~---~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---g 385 (575)
....-+ .=.++.+.+. .+.|- .-+......+...|.+.|++.+|+..|- .+-.-|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 532111 1122222221 22222 1256777888889999999999998775 32111355555555444443 4
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 386 KADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 386 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
...++--+.. ..+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333322222 223346677888999999887653
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.58 E-value=0.3 Score=40.24 Aligned_cols=71 Identities=11% Similarity=-0.005 Sum_probs=45.8
Q ss_pred CChhHHHHHHHHHhccC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 337 PGLEHYTCLISAMGRAG---RLEDAERIAMAM-PFE-P--DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 337 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
++..+.-.+.-++.+.+ +++++..+|++. ... | ....+-.|.-++.+.|++++|.+.++.+++.+|.|..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34444444444555554 344555555544 112 3 24455667778899999999999999999999987543
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.16 E-value=4.2e-05 Score=74.83 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=119.1
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh
Q 008183 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213 (575)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 213 (575)
.+.+|+.|..++.+.|.+.+|.+-| ++..|...|..+|.+..+.|.+++-++.+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4457777777777788877776655 334567778888888888888888888776665543223 333466777777
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 293 (575)
.+++.+-++++ -.||..-...+.+-|...|.++.|.-+|.. ++ -|.-|...+.+.|++..|.+.-++
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~-is-----N~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN-VS-----NFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG-SC-----CCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh-Cc-----cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77655433332 135555566667777777777777766665 33 111222223333333333322111
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC-CC-CCCH
Q 008183 294 LEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM-PF-EPDA 371 (575)
Q Consensus 294 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~ 371 (575)
.-+..||-.+-.+|...+.+..|...--.+.. .| .....++.-|-+.|.++|-..+++.- ++ +...
T Consensus 196 ------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv----ha--deL~elv~~YE~~G~f~ELIsLlEaglglErAHm 263 (624)
T 3lvg_A 196 ------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HA--DELEELINYYQDRGYFEELITMLEAALGLERAHM 263 (624)
T ss_dssp ------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCH
T ss_pred ------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc----cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhH
Confidence 12334555555555555554444333222211 11 11223444555556665555555543 32 2345
Q ss_pred HHHHHHHHHHHHc
Q 008183 372 AVWRALLSFSAIH 384 (575)
Q Consensus 372 ~~~~~ll~~~~~~ 384 (575)
-.|+-|.-.|++.
T Consensus 264 GmFTELaILYsKY 276 (624)
T 3lvg_A 264 GMFTELAILYSKF 276 (624)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555544
No 230
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.40 E-value=7.4 Score=36.68 Aligned_cols=167 Identities=12% Similarity=0.043 Sum_probs=105.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHH
Q 008183 239 GTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELF----HLLEMRGFAPDEYSFLAVLTALC 314 (575)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~ 314 (575)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...|+..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34455558889999999998876 234566778877766655 55566789999988888888776
Q ss_pred hcCC--HHHHHHHHHHHH---HhcCC--CCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 008183 315 NAGL--AGESEKWIERMK---VRYKL--EPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKA 387 (575)
Q Consensus 315 ~~g~--~~~a~~~~~~m~---~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~ 387 (575)
.... .+. ..+.+.+. .+.|- .-|......+...|.+.+++.+|+..|- .+..+.+..+..++.-+...+..
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 6543 221 22222221 22232 2246677788899999999999998884 34344456666665555444332
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhh
Q 008183 388 DMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKD 433 (575)
Q Consensus 388 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 433 (575)
.++--+ ....+--|.-.++...|..+++...+
T Consensus 184 ~e~dlf--------------iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTAPLY--------------CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGHHHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHH--------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222211 12234456777888999888776654
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.97 E-value=0.67 Score=35.38 Aligned_cols=65 Identities=9% Similarity=-0.081 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDIN-------PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
+..-...|...+...++++.|...++.+++.. +....++..|..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999998742 234557899999999999999999999988763
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.69 E-value=2.4 Score=33.83 Aligned_cols=85 Identities=4% Similarity=-0.119 Sum_probs=62.7
Q ss_pred hCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 008183 147 RFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGH 226 (575)
Q Consensus 147 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 226 (575)
.||++......+-.+.. +....+..+......|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45666665555544432 445566677888888988888888888543 4578888888888999999999999999888
Q ss_pred HHHhCCC
Q 008183 227 AVVSGLD 233 (575)
Q Consensus 227 ~~~~g~~ 233 (575)
+.+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8888853
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.54 E-value=2.6 Score=34.35 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=63.8
Q ss_pred hCCCCChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008183 262 NLSVLNSIAWNAMMAGYAQQGDQ------STVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKL 335 (575)
Q Consensus 262 ~~~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 335 (575)
+|.+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. +.++.=..++-..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~------------~~wrrYI~LWIrY------ 67 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKY------------GQNESFARIQVRF------ 67 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGG------------TTCHHHHHHHHHH------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcccc------------ccHHHHHHHHHHH------
Confidence 45567777777777777777777 6667777766654 555420 1111111111100
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchh
Q 008183 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAM---PFEPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSA 407 (575)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 407 (575)
.. +...+++++|.++|+.+ .-+- ...|.....--.++|+++.|.+++.+.+.+.|.+...
T Consensus 68 -------A~----~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 68 -------AE----LKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp -------HH----HHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred -------HH----HHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 00 01124555555555554 1111 5666666666677888888888888888888765443
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.35 E-value=5.9 Score=33.42 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=78.9
Q ss_pred HHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008183 244 DGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESE 323 (575)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 323 (575)
+...++|+++.|.++.+. + .+...|..|.......|+++-|.+.|..... |..+.-.|.-.|+.+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~-l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKK-L--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHH-H--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHH-h--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 344567778888777766 3 3566788888888888888888887776543 122333345566666655
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 324 KWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 324 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
.+-+.. ...| -++.-...+.-.|+++++.++|.+.+.-|.... ....+|-.+.|.++.+.+-
T Consensus 81 kla~iA-~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 81 KMQNIA-QTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHH-HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHH-HHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 543322 2211 234444556667888888888888763332221 1234677777888876653
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.94 E-value=0.95 Score=41.72 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHc-----cCCHHHHHHHHhhhCC-CC--ChhhHHHHHHHHHHc-CC
Q 008183 216 AMEQCRVIHGHAVVSGLDRN---VIVGTGLIDGYGK-----AGIVSDARRVFDENLS-VL--NSIAWNAMMAGYAQQ-GD 283 (575)
Q Consensus 216 ~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~-~~--~~~~~~~li~~~~~~-g~ 283 (575)
....++..+++.++. .|+ ...|..|...|.+ .|+.++|.+.|++++. .| +..++......+++. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345556666666665 344 5577777777877 4788888888887555 33 366666677777764 77
Q ss_pred hHHHHHHHHHHHHcCCC--CCHHH
Q 008183 284 QSTVLELFHLLEMRGFA--PDEYS 305 (575)
Q Consensus 284 ~~~A~~l~~~m~~~g~~--p~~~t 305 (575)
.+++.+.+++....... |+...
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhH
Confidence 88888888887776655 55433
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.50 E-value=0.00087 Score=65.77 Aligned_cols=259 Identities=13% Similarity=0.102 Sum_probs=131.7
Q ss_pred cccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch--HHHHHHHHhhCCCCCcCCChhhHHHHHHHH
Q 008183 32 DRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL--SLNIFLSMLRHPTLSFLPNQRTLASLFKTC 109 (575)
Q Consensus 32 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~--a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~ 109 (575)
.+.+|..|-.++.+.+++.+|.+.|=+ ..|+..|..+|.+..+.|. .+--|-.|.+.. .-+...=+.++-++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT----CCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccHHHHHHHH
Confidence 344555555555555555555554422 2344445555555555555 333333333321 11222223444455
Q ss_pred hhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 008183 110 ASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF 189 (575)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 189 (575)
++.+ ++.+-+.+. -.|+..-...+-+-+...|.++.|.-+|..+.. |.-|...+++.|++..|.+.-
T Consensus 127 Ak~~-rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 127 AKTN-RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HTSC-SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTT
T ss_pred HhhC-cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 5544 322211111 123333333444444455555555444444332 333333344445544443321
Q ss_pred HHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC--CCC
Q 008183 190 ADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS--VLN 267 (575)
Q Consensus 190 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 267 (575)
++ .-+..||-.+-.+|...+.+..|...--.++- ...-...++..|-..|.+++-..+++..+. ...
T Consensus 194 rK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglErAH 262 (624)
T 3lvg_A 194 RK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAH 262 (624)
T ss_dssp TT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC
T ss_pred Hh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchh
Confidence 11 23556888888888888887766543323322 122233467778889999998888887553 566
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008183 268 SIAWNAMMAGYAQQGDQSTVLELFHLLEMR-GFAPDEYSFLAVLTALCNAGLAGESEKWIER 328 (575)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 328 (575)
.-.|+-|.-.|++- ++++..+-++..-.+ +++ -+|++|.+...+.++.-++..
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNip-------KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIP-------KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT-------TTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH-------HHHHHHHHHhhHHHHHHHHhc
Confidence 77788888778776 455555544432221 221 356666666666666555543
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.29 E-value=0.65 Score=45.53 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh-----hCCCccCCc
Q 008183 374 WRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK-----DRRVRKEGG 441 (575)
Q Consensus 374 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~ 441 (575)
...++.++...|+.+++...+..+...+|.+...|..|+.+|.++|+..+|.+.|+.+. +-|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44566777888999999999999999999988899999999999999999999888775 347777654
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.23 E-value=3.1 Score=44.17 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=49.1
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 379 SFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 379 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
.-|...|+++.|+++.++++..-|.+..+|..|..+|...|+|+.|.-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999988774
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.22 E-value=1.8 Score=34.29 Aligned_cols=88 Identities=13% Similarity=-0.050 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChHH
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED---AERIAMAM-PFE-P--DAAVWRALLSFSAIHGKADM 389 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~ 389 (575)
..+..+.+-|...... +. |+..+--.+.-++.+.....+ +..+++.. ... | .....-.|.-++.+.|+++.
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444445555444222 22 455555555556666655544 55555554 212 3 12333445556666677777
Q ss_pred HHHHHHHHHhcCCCCch
Q 008183 390 ASKMGKRLIDINPYDDS 406 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~ 406 (575)
|.+.++.+++.+|.|..
T Consensus 93 A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhCCCCHH
Confidence 77777777777766643
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.72 E-value=3 Score=31.26 Aligned_cols=63 Identities=17% Similarity=0.079 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+.-+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 34456666677777789999999999999999999999999999988766543 3556777664
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.05 E-value=4.6 Score=31.88 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=55.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhcCCCC--ChhHHHHHHHHHhcc
Q 008183 278 YAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGE---SEKWIERMKVRYKLEP--GLEHYTCLISAMGRA 352 (575)
Q Consensus 278 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~ 352 (575)
.........+.+-|.+....|. |+..+-..+..++.+...... +..+++.+... + .| .....-.|.-++.+.
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHh
Confidence 3334445556666666655554 566666667777777776555 78888776332 1 23 233344556678888
Q ss_pred CChHHHHHHHHhC-CCCCC
Q 008183 353 GRLEDAERIAMAM-PFEPD 370 (575)
Q Consensus 353 g~~~~A~~~~~~m-~~~p~ 370 (575)
|++++|.+.++.+ .++|+
T Consensus 88 g~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHhCCC
Confidence 8888888888776 44553
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.60 E-value=19 Score=33.91 Aligned_cols=168 Identities=10% Similarity=-0.043 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHH----HHhHHCCCCcCHHHHHHHHHHHH
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVF----ADMRSSDVGSTMYCVSGALRAAA 212 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 212 (575)
.|.++..=|.+.+++++|.+++-. -...+.+.|+...|-++- +...+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566668899999999998643 233456677776655544 45556788888888877777776
Q ss_pred hccc--HH---HHHHHHHHHHHhC--CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChH
Q 008183 213 ELAA--ME---QCRVIHGHAVVSG--LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQS 285 (575)
Q Consensus 213 ~~~~--~~---~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 285 (575)
.... .+ -..+...+-.+.| -.-|+.....+...|.+.+++.+|+.-|-- -..+....+..|+.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcCCc
Confidence 5542 11 2223333334444 234677888899999999999999999853 33333456655555554444322
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008183 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKV 331 (575)
Q Consensus 286 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 331 (575)
+ +|...-..++. |...+++..|..+++....
T Consensus 185 e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 T--------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp G--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred c--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 1 22233333333 4556788888887776643
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.88 E-value=14 Score=41.71 Aligned_cols=164 Identities=10% Similarity=0.009 Sum_probs=96.1
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHH
Q 008183 140 ALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQ 219 (575)
Q Consensus 140 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 219 (575)
.++..+.+.+..+.|.++....++ +..+--.+..+|...|++++|.+.|.+.- .|+..+.... .....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVLRE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhhcc
Confidence 344455556666666665554443 43333445566777888888888887652 2222211100 00000
Q ss_pred HHHHHHHHHHhC--CCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCCh----hhHHHHHHHHHHcCChHHHHHH
Q 008183 220 CRVIHGHAVVSG--LDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNS----IAWNAMMAGYAQQGDQSTVLEL 290 (575)
Q Consensus 220 a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~----~~~~~li~~~~~~g~~~~A~~l 290 (575)
...+.... ...-..-|..++..+-+.|.++.+.++-..++. +.+. ..|..+..++...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 00111110 011234567788888888888887776654333 2221 2588899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008183 291 FHLLEMRGFAPDEYSFLAVLTALCNAGLAGE 321 (575)
Q Consensus 291 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 321 (575)
+-.+.....+ ...+..|+...+..|..+.
T Consensus 961 L~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 961 LMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 9888765443 5667777777777666543
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.39 E-value=1.7 Score=35.50 Aligned_cols=55 Identities=9% Similarity=-0.107 Sum_probs=45.5
Q ss_pred HcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 383 IHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 383 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
..+|.++|.++|+.+++....-...|......-.+.|+...|.+++..-...+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3489999999999998875434567888888889999999999999988876654
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.49 E-value=26 Score=32.64 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHH----HHHhHHCCCCcCHHHHHHHHHHHH
Q 008183 137 CGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV----FADMRSSDVGSTMYCVSGALRAAA 212 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 212 (575)
.|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566778888999999988654 23345667777666554 455566788888888887777765
Q ss_pred hcc-----cHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHc---C
Q 008183 213 ELA-----AMEQCRVIHGHAVVSGL--DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQ---G 282 (575)
Q Consensus 213 ~~~-----~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~---g 282 (575)
... +.+-..+....-.+.|- .-|+.....+...|.+.|++.+|+.-|-- ....|...+..|+.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 532 22233344444444432 23678888999999999999999998864 3222455555555544444 4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008183 283 DQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVR 332 (575)
Q Consensus 283 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 332 (575)
...++ |...-..++. |.-.+++..|..+++....+
T Consensus 183 ~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 43332 1122222332 44568888898888877544
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.43 E-value=15 Score=29.67 Aligned_cols=67 Identities=3% Similarity=-0.100 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 368 EPDAAVWRALLSFSAIHGK---ADMASKMGKRLIDINPYDDS-AYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 368 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
.|+..+--.+..++.+..+ ..++..+++.+...+|.... ....|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555554455555555543 44566777777776664333 4455677777778888877777777653
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.64 E-value=8.9 Score=28.76 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=46.6
Q ss_pred chHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 182 LVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 182 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
.-+..+-++.+-...+.|++....+.|++|.+.+++..|.++++-+...- .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 34566667777777889999999999999999999999999988876542 333456666654
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.48 E-value=7.7 Score=30.80 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 008183 286 TVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLIS 347 (575)
Q Consensus 286 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 347 (575)
+..+-++.+....+.|+.......+.+|.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4555666666778999999999999999999999999999998876654 44556777764
No 249
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=82.46 E-value=20 Score=37.42 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=28.0
Q ss_pred ccHHHHHHHHhHcCCChHHHHHHHccCCC---CChhhHHHHHHHHhcC
Q 008183 33 RSIYNNLITNYSKSNLLSYSLRLFNHIPS---PNIVSWTALISAHSNS 77 (575)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 77 (575)
..+|. +|--+.+||.+++|.++.++... .-...+-..+..|+.+
T Consensus 153 ~p~Wa-~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 153 VPIWA-LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EEHHH-HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred cccHH-HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 34665 66778899999999999987752 1123566677777644
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.87 E-value=14 Score=27.58 Aligned_cols=86 Identities=6% Similarity=-0.182 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
.-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 46667777777666553 333333333456688999999999998888999999887664 66777777776667755
Q ss_pred CCCCcCHHHHH
Q 008183 195 SDVGSTMYCVS 205 (575)
Q Consensus 195 ~g~~p~~~t~~ 205 (575)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.36 E-value=13 Score=27.67 Aligned_cols=86 Identities=7% Similarity=-0.138 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 008183 115 AFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 115 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
.-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45667777776666553 333333333456688999999999988888999999877654 77887877777777766
Q ss_pred CCCCcCHHHHH
Q 008183 195 SDVGSTMYCVS 205 (575)
Q Consensus 195 ~g~~p~~~t~~ 205 (575)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.23 E-value=5.7 Score=42.23 Aligned_cols=51 Identities=10% Similarity=-0.015 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCC
Q 008183 368 EPDAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVG 419 (575)
Q Consensus 368 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 419 (575)
+.+..-|..|.....+.+++++|.+.|+..+... .++.++.-|+..|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 3445556666666666666666666666665432 34455566666665544
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.98 E-value=9 Score=37.29 Aligned_cols=52 Identities=21% Similarity=0.042 Sum_probs=22.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
+.++...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|.+.|+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~ 229 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYR 229 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444444444444444442221 1123344445555555555555544443
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.69 E-value=14 Score=41.83 Aligned_cols=124 Identities=8% Similarity=-0.077 Sum_probs=85.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCC----------------
Q 008183 308 AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM--PFEP---------------- 369 (575)
Q Consensus 308 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p---------------- 369 (575)
.++..+...+..+.+.++.... +.+...--.+..+|..+|++++|.+.|++. ++.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3555566667776666654322 223333334556778889999999999877 1110
Q ss_pred -------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCch----hHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 370 -------DAAVWRALLSFSAIHGKADMASKMGKRLIDINP-YDDS----AYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 370 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
-..-|..++..+.+++.++.+.++.+.+++..+ ++.. .|..+.+.+...|++++|...+-.+.+...+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 123467788888999999999999998887553 3321 5777889999999999999988777665444
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.65 E-value=58 Score=32.17 Aligned_cols=183 Identities=10% Similarity=0.022 Sum_probs=117.4
Q ss_pred CCchHHHHHHHHhHH-----CCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCchhHHHHHH----HHHHcc
Q 008183 180 SRLVDSLSVFADMRS-----SDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVS-GLDRNVIVGTGLI----DGYGKA 249 (575)
Q Consensus 180 g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li----~~~~~~ 249 (575)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+. |..+. ....++ ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 788999988877654 234455677888999999999999887777665443 32222 223333 333333
Q ss_pred CCHH--HHHHHHhhhCC---CC--Ch-----hhHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHH
Q 008183 250 GIVS--DARRVFDENLS---VL--NS-----IAWNAMMAGYAQQGDQSTVLELFHLLEMR--GFAPD---EYSFLAVLTA 312 (575)
Q Consensus 250 g~~~--~A~~~~~~~~~---~~--~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~a 312 (575)
...+ .-..+.+. +. .. -+ .....|...|-..|++.+|.+++.++... |..+. ...+...+..
T Consensus 108 ~~~d~~~~~~~i~~-l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 108 KSLDLNTRISVIET-IRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp CTTHHHHHHHHHHC-CSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3322 23333333 32 11 11 12345677888999999999999998654 33222 2356667778
Q ss_pred HHhcCCHHHHHHHHHHHHHhc-CCC--CC--hhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 313 LCNAGLAGESEKWIERMKVRY-KLE--PG--LEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 313 ~~~~g~~~~a~~~~~~m~~~~-~~~--p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
|...+++..|..++.++..+. ... |+ ...|...+..+...+++.+|.+.|.+.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 889999999999998874321 112 22 356777888888889999998877665
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.00 E-value=20 Score=28.49 Aligned_cols=44 Identities=5% Similarity=-0.004 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCCC-chhHHHHHHHHHhCCCchHHHHHHHHHh
Q 008183 389 MASKMGKRLIDINPYD-DSAYVIVANVLSGVGRWDEVAEVRKVMK 432 (575)
Q Consensus 389 ~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 432 (575)
++..+++.+.+.+|.. -.....|.-++.+.|++++|.+..+.+.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444444322 1233344444455555555555444444
No 257
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=74.45 E-value=55 Score=30.38 Aligned_cols=220 Identities=7% Similarity=0.034 Sum_probs=109.7
Q ss_pred HHHHHHHhHcCCChHHHHHHHccCCCCChh---hHHHHHHHHhcCch----HHHHHHHHhhCCCCCcCCChh---hHHHH
Q 008183 36 YNNLITNYSKSNLLSYSLRLFNHIPSPNIV---SWTALISAHSNSPL----SLNIFLSMLRHPTLSFLPNQR---TLASL 105 (575)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~----a~~~~~~m~~~~~~~~~p~~~---t~~~l 105 (575)
...+|+-|...|+.++|...++++..|.-. .-..+-.++-+... +-.++..+.. + +-+... .|..+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~---~ls~~~i~~gf~~l 81 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-T---VMSTTDVEKSFDKL 81 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-H---TBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-C---CCCHHHHHHHHHHH
Confidence 467899999999999999999999866421 22222333434333 6667777754 2 322222 34445
Q ss_pred HHHHhhchhhHHHHHHHHHHHHh----hCCCCchhHHHHHHHHHHhCC--ChHHHHHHHHhcCC-----------CC---
Q 008183 106 FKTCASLSHAFLFGLSLHSLSLK----LSLHDKPFCGSALVHFYSRFR--SPDNAKKVFDEIRE-----------RD--- 165 (575)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~-----------~~--- 165 (575)
+..+-...-|...+..++..++. .++-|-.++....-..-...| -+..|..++. ++. ++
T Consensus 82 l~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~-~~~~~~~~~~~WG~~~~~~ 160 (307)
T 2zu6_B 82 LKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLS-MSKGGKRKDSVWGSGGGQQ 160 (307)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHH-TCC----CCCSSCCCSTTS
T ss_pred HHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhc-ccccHhHHhhhcCCCCCCC
Confidence 54444333233344444433332 233222222111100000000 0122222221 110 01
Q ss_pred -c----chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCchhH
Q 008183 166 -V----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA--AMEQCRVIHGHAVVSGLDRNVIV 238 (575)
Q Consensus 166 -~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~ 238 (575)
. ...+.++.-|...|+.++|.+.++++..... -.......+..+.-+.+ ..+....++..+.+.|+-+....
T Consensus 161 ~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 161 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 1 1245678888888899999888888842111 11233444444444432 34556677777777776666555
Q ss_pred HHHHHHHHHccCCH----HHHHHHHhh
Q 008183 239 GTGLIDGYGKAGIV----SDARRVFDE 261 (575)
Q Consensus 239 ~~~li~~~~~~g~~----~~A~~~~~~ 261 (575)
...+-..+....++ ..|..++.+
T Consensus 240 ~~Gf~~vl~~l~Dl~lDiP~A~~~la~ 266 (307)
T 2zu6_B 240 KRGYERIYNEIPDINLDVPHSYSVLER 266 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHhccHhhcccccHHHHHHH
Confidence 55555555544432 234444444
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.40 E-value=16 Score=30.27 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=14.4
Q ss_pred HHHHHHhccCChHHHHHHHHhCC
Q 008183 344 CLISAMGRAGRLEDAERIAMAMP 366 (575)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~ 366 (575)
-+...|.+.|++++|+.+++.+|
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 35556666666666666666664
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.50 E-value=38 Score=30.33 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=57.7
Q ss_pred HHHHHHhHcCCChHHHHHHHccCCCCC----hhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCCC---hhhHHHHHHHH
Q 008183 37 NNLITNYSKSNLLSYSLRLFNHIPSPN----IVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPN---QRTLASLFKTC 109 (575)
Q Consensus 37 ~~li~~~~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p~---~~t~~~ll~~~ 109 (575)
++.+...++.|+++....+++.-..++ ..-++.|..+.. .|+ .++++.+.+.| ..|+ ....+.+. ..
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~-~g~-~~~v~~Ll~~g---~~~~~~~~~g~t~L~-~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ-MSR-EDIVELLLRHG---ADPVLRKKNGATPFL-LA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH-TTC-HHHHHHHHHTT---CCTTCCCTTCCCHHH-HH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHH-cCC-HHHHHHHHHcC---CCCcccCCCCCCHHH-HH
Confidence 456666778888888888887654332 222344444433 333 34444455555 3333 22223333 33
Q ss_pred hhchhhHHHHHHHHHHHHhhCCCCchh--HHHHHHHHHHhCCChHHHHHHHHhcCC
Q 008183 110 ASLSHAFLFGLSLHSLSLKLSLHDKPF--CGSALVHFYSRFRSPDNAKKVFDEIRE 163 (575)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~ 163 (575)
+..| ..+.. +.+++.|..++.. ...+.+...++.|+.+-...+++.-..
T Consensus 80 ~~~~-~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 80 AIAG-SVKLL----KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp HHHT-CHHHH----HHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHcC-CHHHH----HHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 3444 54433 3444455444321 112334445567777766666665433
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.31 E-value=20 Score=28.44 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=46.6
Q ss_pred HHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008183 184 DSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLID 244 (575)
Q Consensus 184 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 244 (575)
+..+-++.+...++.|++......|++|-+.+++..|.++++-+...- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455666777778889999999999999999999999999998886553 344556766654
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.45 E-value=6.8 Score=35.49 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=35.0
Q ss_pred HHhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 008183 348 AMGRAGRLEDAERIAMAM-PFEP-DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYD 404 (575)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 404 (575)
.+.+.|.+++|+.....- .-.| |...-..|+.-++-.|++++|.+-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345666777766554433 3344 45555566667777777777777777766666643
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.78 E-value=83 Score=30.41 Aligned_cols=163 Identities=6% Similarity=-0.139 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHccC-CHHHHHHHHhhhCC--CCChhhHH--
Q 008183 202 YCVSGALRAAAELAAMEQCRVIHGHAVVS-GLDR---NVIVGTGLIDGYGKAG-IVSDARRVFDENLS--VLNSIAWN-- 272 (575)
Q Consensus 202 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~-- 272 (575)
.....+...+.+.|+.++..+++...... +.-+ .......|++.+.... ..+.-.++..+.++ ..+-.+|-
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777666665544221 0011 1234456666665533 33333333333222 11222331
Q ss_pred ----HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCChhHH
Q 008183 273 ----AMMAGYAQQGDQSTVLELFHLLEMRGFAPDE-----YSFLAVLTALCNAGLAGESEKWIERMKVRY-KLEPGLEHY 342 (575)
Q Consensus 273 ----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~ 342 (575)
-++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+.....-. .+.++....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 3566677777777777777776653111111 223344455566677777777666553221 121222211
Q ss_pred H----HHHHHHh-ccCChHHHHHHHHh
Q 008183 343 T----CLISAMG-RAGRLEDAERIAMA 364 (575)
Q Consensus 343 ~----~li~~~~-~~g~~~~A~~~~~~ 364 (575)
. +-..++. ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 1 1112234 56667766666544
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.51 E-value=32 Score=25.63 Aligned_cols=88 Identities=14% Similarity=0.013 Sum_probs=62.9
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 293 (575)
....++|.-|-+.+...|. ...+--+-+..+...|++++|..+.+. +..||...|-+|-. .+.|..+++..-+.+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~-~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHG-NPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTT-CCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC-CCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3456777777777776653 333333445667789999999999999 88999999987755 477888888888878
Q ss_pred HHHcCCCCCHHHHH
Q 008183 294 LEMRGFAPDEYSFL 307 (575)
Q Consensus 294 m~~~g~~p~~~t~~ 307 (575)
+...| .|....|.
T Consensus 94 la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 94 LGGSS-DPALADFA 106 (115)
T ss_dssp HHTCS-SHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77765 34444443
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.54 E-value=34 Score=25.54 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=62.2
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHL 293 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 293 (575)
....++|.-|-+.+...|. ...+--+-+..+...|++++|..+.+. +..||...|-+|-. .+.|..+++..-+.+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~-~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNK-LAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTT-SCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC-CCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3456777777777776653 333333445667789999999999999 88999999987765 467888888877777
Q ss_pred HHHcCCCCCHHHHH
Q 008183 294 LEMRGFAPDEYSFL 307 (575)
Q Consensus 294 m~~~g~~p~~~t~~ 307 (575)
+...| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77665 34444443
No 265
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=67.91 E-value=48 Score=30.80 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=44.8
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhC
Q 008183 362 AMAMPFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDR 434 (575)
Q Consensus 362 ~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 434 (575)
|...+++|. ..+..+-+..+.+.+++..|..+.+++++++|.... .++|.+++..-.+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~--------------a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPR--------------AEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHH--------------HHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH--------------HHHHHHHHHHHhcC
Confidence 444466764 556777888899999999999999999999985432 36788888776654
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.85 E-value=53 Score=29.69 Aligned_cols=119 Identities=15% Similarity=0.193 Sum_probs=66.9
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHhcc
Q 008183 277 GYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL----EHYTCLISAMGRA 352 (575)
Q Consensus 277 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~ 352 (575)
...+.|.+++|++....-.+.. +-|...-..++.-+|-.|++++|.+-++... + +.|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a-~--l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI-K--LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-H--HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H--hCchhhHHHHHHHHHHHH----
Confidence 3456677777777777666653 3355566667777778888888887777553 2 34542 234444432
Q ss_pred CChHHHH-HHHHhC--C--CCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCCch
Q 008183 353 GRLEDAE-RIAMAM--P--FEPDAAVWRALLSFSAI--HGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 353 g~~~~A~-~~~~~m--~--~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
+... ++|..- | +.....-...|+.+... .|+.++|..+-.++.+.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 122211 1 11122233445555443 48888888888888777665544
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.51 E-value=28 Score=31.27 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=8.4
Q ss_pred HHHHHhCCChHHHHHHHHh
Q 008183 142 VHFYSRFRSPDNAKKVFDE 160 (575)
Q Consensus 142 i~~~~~~g~~~~A~~~f~~ 160 (575)
+...++.|+++....+++.
T Consensus 9 L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3333444454444444443
No 268
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.57 E-value=1.2e+02 Score=29.91 Aligned_cols=173 Identities=9% Similarity=-0.012 Sum_probs=100.4
Q ss_pred CChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCcCHHHHHHHHHHHH----hc
Q 008183 149 RSPDNAKKVFDEIRE-----RD----VVCYGAMIVGFAQNSRLVDSLSVFADMRSS-DVGSTMYCVSGALRAAA----EL 214 (575)
Q Consensus 149 g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~----~~ 214 (575)
|++++|.+.+-.+.+ .| ......++..|...|+++...+.+..+... |..+.. ...+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 677888776654432 22 334677888899999999888877766443 332222 233333332 22
Q ss_pred ccHHHHHHHHHHHHHh------C-CCC---chhHHHHHHHHHHccCCHHHHHHHHhhhCC----CC-C----hhhHHHHH
Q 008183 215 AAMEQCRVIHGHAVVS------G-LDR---NVIVGTGLIDGYGKAGIVSDARRVFDENLS----VL-N----SIAWNAMM 275 (575)
Q Consensus 215 ~~~~~a~~~~~~~~~~------g-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~-~----~~~~~~li 275 (575)
...+.... ...... | +-. .......|...|...|++.+|.+++.+ +. .. + +..|...+
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~-l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCE-LQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHCSSSCHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHhcccHHHHHHHHHHHH
Confidence 32222111 111111 1 111 123446788899999999999999887 43 11 1 23566677
Q ss_pred HHHHHcCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 008183 276 AGYAQQGDQSTVLELFHLLEM----RGFAPDE--YSFLAVLTALCNAGLAGESEKWI 326 (575)
Q Consensus 276 ~~~~~~g~~~~A~~l~~~m~~----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 326 (575)
..|...+++.+|..++++... ....|+. ..+...+..+...+++.+|.+.|
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 788899999999999988743 2222222 23444555556666766665544
No 269
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.33 E-value=56 Score=25.75 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCC---cchHHHHHHHHHhCCC--chHHHHHHHHhHHCCCCcCHHH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRERD---VVCYGAMIVGFAQNSR--LVDSLSVFADMRSSDVGSTMYC 203 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 203 (575)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4567888888899999999999987652 2344455555555432 3567788888887776555443
No 270
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=62.19 E-value=63 Score=26.75 Aligned_cols=113 Identities=12% Similarity=0.000 Sum_probs=59.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC-----CCc-------chHHHHHHHHHhCCCchHHHHHHHHhHHCC-CCcCH-HH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRE-----RDV-------VCYGAMIVGFAQNSRLVDSLSVFADMRSSD-VGSTM-YC 203 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-~t 203 (575)
+-.-+..+...|.++.|+-+.+.+.. +++ .+...+..++...|++.+|...|++..... .-|.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34445666677788877777665431 332 144556677778888888888888753311 11111 11
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC
Q 008183 204 VSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264 (575)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 264 (575)
.+++-. ...... ......+..+---+-.+|.+.|+.++|..+++. ++
T Consensus 103 ~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~-Ip 149 (167)
T 3ffl_A 103 RPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG-IP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT-SC
T ss_pred cccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhc-CC
Confidence 111100 000000 011233445555577778888888888888887 65
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.35 E-value=81 Score=27.07 Aligned_cols=101 Identities=9% Similarity=0.123 Sum_probs=63.9
Q ss_pred HHHHHHHhC-CCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 357 DAERIAMAM-PFEPDAA---VWRALLSFSAIHGKADMASKMGKRLIDIN--PYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 357 ~A~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
.+.+.|... ..+-|+. .|-..+..| ..++...+..+|..|...+ ......|......+...|++.+|..+++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444 2344543 344444433 1344668888888888644 55566788889999999999999999887
Q ss_pred HhhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 008183 431 MKDRRVRKEGGRSWIEVKGKVHVFLAGDRMHERTEDIYTKLAELMEECERLGY 483 (575)
Q Consensus 431 m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 483 (575)
=.+++-+| .+...+...+...+|.+.++
T Consensus 141 GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 141 GAENNCRP-------------------------YNRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCC
Confidence 76665443 13344455566777877776
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.19 E-value=83 Score=26.45 Aligned_cols=111 Identities=5% Similarity=0.032 Sum_probs=62.2
Q ss_pred CCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHH
Q 008183 132 HDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA 211 (575)
Q Consensus 132 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 211 (575)
.++..+....+..+++.|+.+....+.+.+..+|...-...+.++.+.++. +++..+..+.. .++...-...+.++
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL 162 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADAL 162 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 345556666666666666655455555555556655555566666666653 34444545443 35666666667777
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccC
Q 008183 212 AELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAG 250 (575)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 250 (575)
...+..+ +...+..+.+. ++..+-...+.++.+..
T Consensus 163 ~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 163 GEIGGER-VRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHCSHH-HHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred HHhCchh-HHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 7766543 44444444443 35555555566555543
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.37 E-value=63 Score=31.68 Aligned_cols=58 Identities=9% Similarity=0.003 Sum_probs=27.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008183 341 HYTCLISAMGRAGRLEDAERIAMAM-----PFEPDAAVWRALLSFSAIHGKADMASKMGKRLI 398 (575)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 398 (575)
+...+.+.|.+.|++++|.+.|.++ +..--...+-.++..+...+++..+.....++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344445555555555555555444 111113344444555555555555555555544
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.17 E-value=1e+02 Score=30.08 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH----
Q 008183 270 AWNAMMAGYAQQGDQSTVLELFHLLEMRGFAP--DEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYT---- 343 (575)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---- 343 (575)
++..+..-|.+.|+.++|.+.|.++...-..+ -...+..++..+...+++..+...+.+......-.++...-+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 34445555555666666666665555432222 234455556666666677666666666533222222221111
Q ss_pred HHHHHHhccCChHHHHHHHHhC
Q 008183 344 CLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m 365 (575)
.-...+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1111233457777777666554
No 275
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.94 E-value=51 Score=26.91 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCC---cchHHHHHHHHHhCCC--chHHHHHHHHhHHCCCCcCHHH
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRERD---VVCYGAMIVGFAQNSR--LVDSLSVFADMRSSDVGSTMYC 203 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 203 (575)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4667888888899999999999987652 2344455555555332 3457788888877776555443
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.08 E-value=67 Score=29.13 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=10.7
Q ss_pred HHHhHcCCChHHHHHHHcc
Q 008183 40 ITNYSKSNLLSYSLRLFNH 58 (575)
Q Consensus 40 i~~~~~~g~~~~A~~~f~~ 58 (575)
+...+..|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3444556666666666554
No 277
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.40 E-value=1.2e+02 Score=26.15 Aligned_cols=52 Identities=8% Similarity=-0.056 Sum_probs=26.4
Q ss_pred HHhhchhhHHHHHHHHHHHHhhCCCCchh--HHHHHHHHHHhCCChHHHHHHHHh
Q 008183 108 TCASLSHAFLFGLSLHSLSLKLSLHDKPF--CGSALVHFYSRFRSPDNAKKVFDE 160 (575)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~ 160 (575)
..+..| +.+..+.+.+.+.+.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 15 ~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 15 IAVVQG-NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHcC-CHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 334445 6666666666655555443322 122334444556666655555553
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.33 E-value=1e+02 Score=29.83 Aligned_cols=21 Identities=14% Similarity=-0.069 Sum_probs=12.5
Q ss_pred HHHHhHcCCChHHHHHHHccC
Q 008183 39 LITNYSKSNLLSYSLRLFNHI 59 (575)
Q Consensus 39 li~~~~~~g~~~~A~~~f~~m 59 (575)
.+..-+..|+++-+..+++.-
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g 37 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRG 37 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHcC
Confidence 344455666776666666653
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.72 E-value=1.8e+02 Score=27.54 Aligned_cols=222 Identities=8% Similarity=0.018 Sum_probs=112.7
Q ss_pred HHHHHHHHhHcCCChHHHHHHHccCCCCCh--hhHHHHHH-HHhcCch----HHHHHHHHhhCCCCCcCCChhh---HHH
Q 008183 35 IYNNLITNYSKSNLLSYSLRLFNHIPSPNI--VSWTALIS-AHSNSPL----SLNIFLSMLRHPTLSFLPNQRT---LAS 104 (575)
Q Consensus 35 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~li~-~~~~~g~----a~~~~~~m~~~~~~~~~p~~~t---~~~ 104 (575)
....+|.-|...|+.++|...++++..|+- ..-..+|. ++-+... +-.++..+.. + +-+.... |..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~---~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-T---VMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-T---SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-C---CCCHHHHHHHHHH
Confidence 467789999999999999999999986652 22223333 3333322 6666666663 3 3333333 333
Q ss_pred HHHHHhhchhhHHHHHHHHHHH----HhhCCCCchhHHHHHHHHHHhCC--ChHHHHHHHHh------cCC--------C
Q 008183 105 LFKTCASLSHAFLFGLSLHSLS----LKLSLHDKPFCGSALVHFYSRFR--SPDNAKKVFDE------IRE--------R 164 (575)
Q Consensus 105 ll~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~------m~~--------~ 164 (575)
++..+-...-|...+..++..+ +..++-|-.++.......-+..| -++.|..++.. +.+ +
T Consensus 132 lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~ 211 (358)
T 3eiq_C 132 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQ 211 (358)
T ss_dssp HHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSS
T ss_pred HHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCc
Confidence 3333322221233333333333 33333222222111000000000 01222222210 000 0
Q ss_pred Cc----chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCchhH
Q 008183 165 DV----VCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA--AMEQCRVIHGHAVVSGLDRNVIV 238 (575)
Q Consensus 165 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~ 238 (575)
.+ ...+.++.-|...|+.++|.+.++++..... -.......+..+.-+.+ ..+...+++..+.+.|+-+....
T Consensus 212 ~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 212 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 11 1257788888999999999999988853211 12334445555555433 34567788888888887776666
Q ss_pred HHHHHHHHHccCCH----HHHHHHHhh
Q 008183 239 GTGLIDGYGKAGIV----SDARRVFDE 261 (575)
Q Consensus 239 ~~~li~~~~~~g~~----~~A~~~~~~ 261 (575)
...+...+....++ ..|..++.+
T Consensus 291 ~~Gf~~vl~~ldDl~lDiP~A~~~la~ 317 (358)
T 3eiq_C 291 KRGYERIYNEIPDINLDVPHSYSVLER 317 (358)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHhccHhhcccccHHHHHHH
Confidence 66666665554433 235555444
No 280
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=48.67 E-value=3e+02 Score=30.04 Aligned_cols=249 Identities=9% Similarity=-0.033 Sum_probs=128.6
Q ss_pred HHhCCChHHHHHHHHhcCCC----Cc--chHHHHHHHHHhCCCchHHHHHHHHhHHCCC--CcC---HHH--HHHHHHHH
Q 008183 145 YSRFRSPDNAKKVFDEIRER----DV--VCYGAMIVGFAQNSRLVDSLSVFADMRSSDV--GST---MYC--VSGALRAA 211 (575)
Q Consensus 145 ~~~~g~~~~A~~~f~~m~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~t--~~~ll~~~ 211 (575)
....|+.+++..+++.-... +. ..-..+.-|....|..++++.++.......- .-+ ... -.++--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567788888888765431 11 1223344456677777778887777654211 001 111 11221222
Q ss_pred Hhccc-HHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhH--HHHHHHHHHcCChHH
Q 008183 212 AELAA-MEQCRVIHGHAVVSGLDRNV--IVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAW--NAMMAGYAQQGDQST 286 (575)
Q Consensus 212 ~~~~~-~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~ 286 (575)
+-.|. -+++...+..++... .+.. ...-+|...|...|+-+....++..+++..+.... -++.-|+...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22221 134444444444432 1111 12223444455677877777777663433333332 333344557899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 008183 287 VLELFHLLEMRGFAPDEYSFL---AVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAM 363 (575)
Q Consensus 287 A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (575)
+..+.+.+... ..| .+-|. .+.-+|+..|+.....+++..+... ...++.-...+.-++...|+.+.+.++++
T Consensus 543 ~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 99998888764 122 22333 3344677889988888888877432 22233333333344445677766777776
Q ss_pred hCC--CCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 008183 364 AMP--FEPDAAVWRALLSFSAIHGKA-DMASKMGKRLI 398 (575)
Q Consensus 364 ~m~--~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 398 (575)
.+. ..|.+..-..+.-+....|+. .++..++..+.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 542 234444444444444444443 45566666654
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.02 E-value=74 Score=27.54 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=9.4
Q ss_pred HhCCCchHHHHHHHHhHHCCC
Q 008183 177 AQNSRLVDSLSVFADMRSSDV 197 (575)
Q Consensus 177 ~~~g~~~~A~~~~~~m~~~g~ 197 (575)
++.|+.+-+..+++.+.+.|.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 344555544444444433333
No 282
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.89 E-value=2e+02 Score=27.69 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=70.4
Q ss_pred HHHHHccCCHHHHHHHHhhhCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhc
Q 008183 243 IDGYGKAGIVSDARRVFDENLSVLN---SIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEY---SFLAVLTALCNA 316 (575)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~ 316 (575)
+...++.|+++-+.-+++. -..++ ...++. +...+..|+.+ +++.+.+.|..|+.. ..+ .+...+..
T Consensus 150 L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~ 222 (437)
T 1n11_A 150 LHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQ 222 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHT-TCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHc
Confidence 4444566676666666654 22221 111222 22334455543 334444455443321 122 23333456
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChh--HHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHH
Q 008183 317 GLAGESEKWIERMKVRYKLEPGLE--HYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVWRALLSFSAIHGKADMASK 392 (575)
Q Consensus 317 g~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~ 392 (575)
|+.+-+..+++ .|..++.. .-...+...+..|+.+-+..+++.-. ...+..-++.|. ..+..|+.+-+..
T Consensus 223 ~~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~ 296 (437)
T 1n11_A 223 NQVEVARSLLQ-----YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH-LVAQEGHVPVADV 296 (437)
T ss_dssp TCHHHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH-HHHHHTCHHHHHH
T ss_pred CCHHHHHHHHH-----cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHH
Confidence 66665555443 23333211 11122233345666666655554431 011111122222 2345666665555
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHH
Q 008183 393 MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEV 427 (575)
Q Consensus 393 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 427 (575)
+++.-...+..+..-.. .+...+..|+.+-+.-+
T Consensus 297 Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~L 330 (437)
T 1n11_A 297 LIKHGVMVDATTRMGYT-PLHVASHYGNIKLVKFL 330 (437)
T ss_dssp HHHHTCCTTCCCSSCCC-HHHHHHHSSCSHHHHHH
T ss_pred HHhCCccCCCCCCCCCC-HHHHHHHcCcHHHHHHH
Confidence 55543333322222112 22333456666544333
No 283
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.86 E-value=3.4e+02 Score=29.61 Aligned_cols=292 Identities=12% Similarity=0.062 Sum_probs=151.2
Q ss_pred HHHHHHHHHHhCCChHHH-HHHHH-hcCC-CCcchHHHH-HHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHH--
Q 008183 137 CGSALVHFYSRFRSPDNA-KKVFD-EIRE-RDVVCYGAM-IVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRA-- 210 (575)
Q Consensus 137 ~~~~li~~~~~~g~~~~A-~~~f~-~m~~-~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-- 210 (575)
+..++.+++..+|--.+. .+... .+.+ .+-.-+.+. --|....|+.++++.++......+...+..+-...+-+
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 445677888888855443 21111 1111 121122222 33567789999999888876543212344444433333
Q ss_pred HHhcccHHHHHHHHHHHHHhCC-------CCchhHHHHHHHHHHccCC-HHHHHHHHhhhCCCCChh-h-HHH--HHHHH
Q 008183 211 AAELAAMEQCRVIHGHAVVSGL-------DRNVIVGTGLIDGYGKAGI-VSDARRVFDENLSVLNSI-A-WNA--MMAGY 278 (575)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~g~-------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~-~-~~~--li~~~ 278 (575)
....|..+.+..++...+...- .+......++.-+++-.|. -+++.+.+..++...+.. . ..+ |...|
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 3344544566676666555421 0122233333333333332 234455555434444432 2 222 22334
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhcCCCCChhHHH--HHHHHHhccCC
Q 008183 279 AQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTA--LCNAGLAGESEKWIERMKVRYKLEPGLEHYT--CLISAMGRAGR 354 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~g~ 354 (575)
+-.|+.+....++..+.+. . +......+..+ +...|+.+.+..+.+.+... -.|-...-. ++.-+|+-.|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~-~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQET-Q--HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHC-S--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhcc-C--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCC
Confidence 5667777777888777653 2 33333334333 44678889898888877432 223333333 33446778889
Q ss_pred hHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCc-hHHHHHHHHH
Q 008183 355 LEDAERIAMAMPFEPD--AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRW-DEVAEVRKVM 431 (575)
Q Consensus 355 ~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m 431 (575)
.....+++..+...++ +.....+.-++...|+.+.+.++++.+.+...+....-..+.-+....|.. .+|..++..+
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 8877778887732343 333333333445567777677777665553322222222334444444443 5677788777
Q ss_pred hh
Q 008183 432 KD 433 (575)
Q Consensus 432 ~~ 433 (575)
..
T Consensus 656 ~~ 657 (963)
T 4ady_A 656 TK 657 (963)
T ss_dssp HT
T ss_pred cc
Confidence 53
No 284
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=44.20 E-value=1.2e+02 Score=24.29 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 372 AVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 372 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
...-.|.-++.+.|++++|.+..+.+++.+|.|..
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 34445667888999999999999999999998854
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.47 E-value=86 Score=26.16 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=24.1
Q ss_pred HHhHcCCChHHHHHHHccCC----CCChhhHHHHHHHHhcCchHHHHHHHHhhCC
Q 008183 41 TNYSKSNLLSYSLRLFNHIP----SPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91 (575)
Q Consensus 41 ~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~ 91 (575)
...+..|+.+....++..-. .+|..-++.|..+.... + .++++.+.+.|
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~-~~~v~~Ll~~g 62 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN-D-IEIAKALIDRG 62 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHT-C-HHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC-C-HHHHHHHHHcC
Confidence 33456777777777776543 22333344444443322 2 33444444444
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.99 E-value=88 Score=24.56 Aligned_cols=71 Identities=3% Similarity=-0.071 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCchhHHH
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA--AMEQCRVIHGHAVVSGLDRNVIVGT 240 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~ 240 (575)
.+.++.-|...|+.++|.+.++++... ..-.......+..+.-+.+ ..+....++..+.+.|+-+......
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~ 82 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 82 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 466888899999999999999998421 1112234444555555442 3456667777777766544444333
No 287
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=42.35 E-value=41 Score=24.43 Aligned_cols=49 Identities=22% Similarity=0.127 Sum_probs=36.2
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCccCCCccccccChHHhhhhHHHHHHHHHHHHhhh
Q 008183 461 HERTEDIYTKLAELMEECERLGYVPVWDEMLHNVGDREKREALWYHSEKLALAFGLV 517 (575)
Q Consensus 461 ~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~l~~~~~~~ 517 (575)
.+...+++..+++-..+++..|+.||...+- .+...+-++.+...||=.
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~G--------~eayef~~e~v~~e~g~e 60 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILFG--------REAYNFLSNLLKKEMEEE 60 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEEC--------HHHHHHHHHHHHHHHTCC
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEc--------HHHHHHHHHHHhHhhccc
Confidence 4567788888999999999999999986542 234455666777777754
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.93 E-value=1.1e+02 Score=26.99 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=40.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhHH--CCCCc----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 008183 172 MIVGFAQNSRLVDSLSVFADMRS--SDVGS----TMYCVSGALRAAAELAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDG 245 (575)
Q Consensus 172 li~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 245 (575)
-+..+....++++|++++++..+ .++++ +.......+..-.....-..+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 45566677777777777776543 12221 1111222222222222333333333333 22 3334444455566
Q ss_pred HHccCCHHHHHHHHhh
Q 008183 246 YGKAGIVSDARRVFDE 261 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~~ 261 (575)
+.+.|+-++|.++|=+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 6666666666666644
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.89 E-value=2e+02 Score=31.66 Aligned_cols=91 Identities=8% Similarity=-0.134 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHHHHHHHHhC--CCCC-----------------
Q 008183 309 VLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLEDAERIAMAM--PFEP----------------- 369 (575)
Q Consensus 309 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p----------------- 369 (575)
++..|...|..+-+.++...+ +.+...--.+..+|...|++++|.+.|++. ++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 667777788887766644322 223222234566788899999999999887 2211
Q ss_pred ---C---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCc
Q 008183 370 ---D---AAVWRALLSFSAIHGKADMASKMGKRLIDI-NPYDD 405 (575)
Q Consensus 370 ---~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~ 405 (575)
+ ..-|..++..+-+++-++.+.++.+.+++. .++++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 0 124666777777778888888877777763 34443
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.19 E-value=87 Score=28.36 Aligned_cols=117 Identities=7% Similarity=0.050 Sum_probs=57.0
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCh---hHHHHHHHHHhccCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHH
Q 008183 314 CNAGLAGESEKWIERMKVRYKLEPGL---EHYTCLISAMGRAGRLEDAERIAMAMPFEPDA-AVWRALLSFSAIHGKADM 389 (575)
Q Consensus 314 ~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~ 389 (575)
+..|..+-+..+++. |..++. .-+.+.+...+..|+.+-+..+++.-....+. .-++ .+...+..|+.+-
T Consensus 103 ~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t-~L~~A~~~g~~~~ 176 (285)
T 3kea_A 103 VDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLS-CIHITIKNGHVDM 176 (285)
T ss_dssp HHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHH-HHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCcc-HHHHHHHcChHHH
Confidence 455666555544432 433332 12123444455667777666666554322222 2333 3444456788877
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccCC
Q 008183 390 ASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKEG 440 (575)
Q Consensus 390 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 440 (575)
+..+++.-...+..+..-....+......|+. ++.+.+.+.|..++.
T Consensus 177 v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred HHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 77777665554432322111112223334443 345556677766543
No 291
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=40.72 E-value=1.3e+02 Score=23.73 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch
Q 008183 371 AAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDS 406 (575)
Q Consensus 371 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 406 (575)
...+--|.-++.+.|+++.|.+..+.+++.+|.|..
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 444555666777788888888888888888887743
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.21 E-value=78 Score=26.44 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=9.0
Q ss_pred HhCCChHHHHHHHHhc
Q 008183 146 SRFRSPDNAKKVFDEI 161 (575)
Q Consensus 146 ~~~g~~~~A~~~f~~m 161 (575)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4556666666665543
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.01 E-value=97 Score=25.18 Aligned_cols=69 Identities=3% Similarity=-0.064 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCCCchhH
Q 008183 169 YGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAEL--AAMEQCRVIHGHAVVSGLDRNVIV 238 (575)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~ 238 (575)
.+.++.-|...|+.++|.+.++++... ..-...+...+..++-+. ...+....++..+.+.|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 467888899999999999999998421 111233444455555543 234556677777776665444443
No 294
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=38.27 E-value=1.8e+02 Score=24.48 Aligned_cols=80 Identities=9% Similarity=0.086 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHH
Q 008183 133 DKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAA 212 (575)
Q Consensus 133 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 212 (575)
++..+-...+..+++.|+.+....+.+.+..+|...-...+.++.+.++. ++...+.++.. .+|...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444445555555543344444444444444444444555555543 23333333322 244444444444444
Q ss_pred hccc
Q 008183 213 ELAA 216 (575)
Q Consensus 213 ~~~~ 216 (575)
..++
T Consensus 107 ~~~~ 110 (211)
T 3ltm_A 107 QIGD 110 (211)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 4444
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.83 E-value=1.6e+02 Score=23.86 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcC--CCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCc
Q 008183 389 MASKMGKRLIDIN--PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVR 437 (575)
Q Consensus 389 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 437 (575)
++..+|..|...+ ...+..|......+...|++.+|.++++.=.+++-+
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3677777777544 445556777778888888888888887766655444
No 296
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=37.32 E-value=11 Score=22.51 Aligned_cols=18 Identities=33% Similarity=0.704 Sum_probs=13.3
Q ss_pred cCCccCcc-cCccccCCCC
Q 008183 557 DVNRYHRF-LNGSCTCGDL 574 (575)
Q Consensus 557 d~~~~h~~-~~g~~~c~~~ 574 (575)
.|-.-|.. .+|-|||+-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 45555665 7899999976
No 297
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=36.44 E-value=1.3e+02 Score=25.82 Aligned_cols=201 Identities=10% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHH--HHHHHHHHhCCChHHHHHHH
Q 008183 81 LNIFLSMLRHPTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCG--SALVHFYSRFRSPDNAKKVF 158 (575)
Q Consensus 81 ~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~f 158 (575)
.++++.+.+.|......|....+.+..++.... ..+.+.+++.|..++.... .+.+...+..|+.+-+..++
T Consensus 24 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 97 (237)
T 3b7b_A 24 VDICHMLVQAGANIDTCSEDQRTPLMEAAENNH------LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97 (237)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC------HHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCC------HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q ss_pred HhcCC----CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHH--HHHHHHhcccHHHHHHHHHHHHHhCC
Q 008183 159 DEIRE----RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSG--ALRAAAELAAMEQCRVIHGHAVVSGL 232 (575)
Q Consensus 159 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~g~ 232 (575)
+.-.. ++...++.+..+..... .++++.+.+.|..++...... .+...+..|..+ +.+.+++.|.
T Consensus 98 ~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~ 168 (237)
T 3b7b_A 98 SNGQMDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKC 168 (237)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTC
T ss_pred hCCCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCC
Q ss_pred CCchhH--HHHHHHHHHccCCHHHHHHHHhhhCCCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 008183 233 DRNVIV--GTGLIDGYGKAGIVSDARRVFDENLSVLNSI--AWNAMMAGYAQQGDQSTVLELFHLLEMR 297 (575)
Q Consensus 233 ~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~ 297 (575)
.++..- ..+.+...++.|+.+-+.-+++. -..++.. .-.+-+...+..|+.+.++++.+.+++.
T Consensus 169 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 169 DLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
No 298
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=35.96 E-value=8.2 Score=26.28 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=19.0
Q ss_pred ceEEeecCCccCcccCccccCCC
Q 008183 551 REIVVRDVNRYHRFLNGSCTCGD 573 (575)
Q Consensus 551 ~~~~~~d~~~~h~~~~g~~~c~~ 573 (575)
+.|-+.|....|+|+||+-+-+|
T Consensus 8 k~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEEC
T ss_pred eeEecCCCcEEEEEcCCceehhh
Confidence 56788999999999999976443
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.51 E-value=1.7e+02 Score=24.93 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=11.4
Q ss_pred HhHcCCChHHHHHHHccC
Q 008183 42 NYSKSNLLSYSLRLFNHI 59 (575)
Q Consensus 42 ~~~~~g~~~~A~~~f~~m 59 (575)
..++.|+++....+++.-
T Consensus 15 ~A~~~g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAG 32 (240)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHcC
Confidence 345677777777776643
No 300
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.46 E-value=2e+02 Score=23.92 Aligned_cols=141 Identities=10% Similarity=0.062 Sum_probs=61.2
Q ss_pred chhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHh
Q 008183 134 KPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAE 213 (575)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 213 (575)
|..+....+..+.+.|+.+....+.+.+..+|...-...+.++.+.|+.+ +...+..+.. .++...-...+.++..
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444455444444455555555432 3333333332 2455555555555555
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCC
Q 008183 214 LAAMEQCRVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGD 283 (575)
Q Consensus 214 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~ 283 (575)
.++.+....+.. +. -.++..+-...+.++++.|+-+ +...+...+..++...-...+.++.+.|.
T Consensus 103 ~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 103 IGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred hCcHHHHHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 554322222221 11 1345555555555555555432 22222222444444444444444444443
No 301
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=34.09 E-value=79 Score=29.80 Aligned_cols=27 Identities=15% Similarity=0.269 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCC
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRER 164 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~~ 164 (575)
...++.-|...|+.++|.+.++++..|
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 355666666777777777777777654
No 302
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.43 E-value=2e+02 Score=23.65 Aligned_cols=50 Identities=8% Similarity=-0.017 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcC--CCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCcc
Q 008183 389 MASKMGKRLIDIN--PYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRK 438 (575)
Q Consensus 389 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 438 (575)
....+|..|...+ ...+..|......+...|++.+|.++++.=.+++-+|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3667777777644 5555678888888889999999999988777666543
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.03 E-value=1.6e+02 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=8.4
Q ss_pred HHHHHhCCChHHHHHHHHh
Q 008183 142 VHFYSRFRSPDNAKKVFDE 160 (575)
Q Consensus 142 i~~~~~~g~~~~A~~~f~~ 160 (575)
+...++.|+.+-+..+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344444454444444443
No 304
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.34 E-value=2e+02 Score=24.43 Aligned_cols=36 Identities=19% Similarity=0.024 Sum_probs=19.9
Q ss_pred HHHhHcCCChHHHHHHHccCC----CCChhhHHHHHHHHh
Q 008183 40 ITNYSKSNLLSYSLRLFNHIP----SPNIVSWTALISAHS 75 (575)
Q Consensus 40 i~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~ 75 (575)
+...++.|+.+....+++.-. .+|..-++.|..+..
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~ 46 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL 46 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHH
Confidence 445566777777777776521 234444445544443
No 305
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=31.89 E-value=2.3e+02 Score=23.79 Aligned_cols=166 Identities=11% Similarity=0.102 Sum_probs=91.1
Q ss_pred ChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 008183 150 SPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229 (575)
Q Consensus 150 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 229 (575)
+.+....+.+.+..+|...-...+..+.+.|.. ++...+.++.. .+|...-...+.++...++.+....+.. +.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l- 90 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-AL- 90 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HT-
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HH-
Confidence 333444455555556666666666666666663 34444444443 3566666666667766665433222222 22
Q ss_pred hCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008183 230 SGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309 (575)
Q Consensus 230 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 309 (575)
-.++..+-...+.++++.|+.+....+.. ++..++...-...+.++.+.|..+ +...+..+.. .++...-...
T Consensus 91 --~~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 --KDEDGWVRQSAAVALGQIGDERAVEPLIK-ALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp --TCSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred --cCCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 24667777777777777776543333333 366677666666666676666643 3444444432 3455555666
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 008183 310 LTALCNAGLAGESEKWIERM 329 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m 329 (575)
+.++.+.+.. .+...+..+
T Consensus 164 ~~aL~~~~~~-~~~~~L~~~ 182 (211)
T 3ltm_A 164 ADALGEIGGE-RVRAAMEKL 182 (211)
T ss_dssp HHHHHHHCSH-HHHHHHHHH
T ss_pred HHHHHHhCch-hHHHHHHHH
Confidence 6666666653 344444444
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.83 E-value=64 Score=26.28 Aligned_cols=44 Identities=7% Similarity=-0.017 Sum_probs=27.1
Q ss_pred cHHHHHHHHHhhCC--CcccHHHHHHHHhHcCCChHHHHHHHccCC
Q 008183 17 DPRIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIP 60 (575)
Q Consensus 17 ~~~~~~~~~~~~g~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 60 (575)
.+..++..+.+.|+ .-...|......+-..|++.+|.++|+.-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666666666 445566666666666666666666665443
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.09 E-value=1.5e+02 Score=26.18 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=20.0
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHhC
Q 008183 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (575)
.++...-...+..+.+.|+-++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 344555566667777888888887776443
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.80 E-value=2.3e+02 Score=26.48 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=39.6
Q ss_pred HHHHHHHhHcCCChHHHHHHHccCCCCCh---hhHHHHHHHHhcCch----HHHHHHHHhhCC
Q 008183 36 YNNLITNYSKSNLLSYSLRLFNHIPSPNI---VSWTALISAHSNSPL----SLNIFLSMLRHP 91 (575)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~----a~~~~~~m~~~~ 91 (575)
.+.++.-|...|+.++|...++++..|.- +....+..+.-+... +..++..+.+.+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~ 76 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAG 76 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCC
Confidence 46789999999999999999999987642 234444444444332 777777777655
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.53 E-value=83 Score=23.23 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=30.8
Q ss_pred CChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHH
Q 008183 149 RSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSL 186 (575)
Q Consensus 149 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 186 (575)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999999988899999999987777655543
No 310
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.18 E-value=3.4e+02 Score=25.67 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCCC
Q 008183 138 GSALVHFYSRFRSPDNAKKVFDEIRERD 165 (575)
Q Consensus 138 ~~~li~~~~~~g~~~~A~~~f~~m~~~~ 165 (575)
..++|.=|...|++++|...++++..|+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~ 42 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPK 42 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCch
Confidence 4566777777777777777777776654
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.79 E-value=6.2e+02 Score=27.66 Aligned_cols=128 Identities=9% Similarity=-0.047 Sum_probs=72.8
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHH
Q 008183 141 LVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELAAMEQC 220 (575)
Q Consensus 141 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 220 (575)
++.-+...|..+-|.++...++. +...--.+..+|...|++++|.+.|++.- .|+.++....... +..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~----------~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL----------REF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG----------HHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch----------hhh
Confidence 56667778888888776666654 44433456778899999999999998863 3443321110000 000
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC---CCCh----hhHHHHHHHHHHcC
Q 008183 221 RVIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS---VLNS----IAWNAMMAGYAQQG 282 (575)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~----~~~~~li~~~~~~g 282 (575)
..++... + .-.....-|..++..+-+.+.++.+.++-+.++. ..|. ..|+.++.+.+..|
T Consensus 884 ~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011000 0 0011223677788888888888887766654433 2232 35667777766554
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.90 E-value=1.7e+02 Score=23.31 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=37.5
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChHH
Q 008183 292 HLLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 292 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
+.|.+.|++++..-. .++..+...+..-.|.++++.+. +.+...+..|.-.-++.+...|-+.+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALE-GKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHG-GGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHH-HhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 345667777665444 34444445555667778888774 33434455555555667777776543
No 313
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.84 E-value=2.7e+02 Score=23.55 Aligned_cols=51 Identities=24% Similarity=0.028 Sum_probs=27.2
Q ss_pred HHHHhHcCCChHHHHHHHccCC----CCChhhHHHHHHHHhcCchHHHHHHHHhhCC
Q 008183 39 LITNYSKSNLLSYSLRLFNHIP----SPNIVSWTALISAHSNSPLSLNIFLSMLRHP 91 (575)
Q Consensus 39 li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~a~~~~~~m~~~~ 91 (575)
.+...++.|+++....+++.-+ .++..-++.|..+.... + .++++.+.+.|
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-~-~~~v~~Ll~~g 63 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-H-TEIVEFLLQLG 63 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHT-C-HHHHHHHHHTT
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcC-c-HHHHHHHHHhC
Confidence 3555667788888887776543 23444444554443332 2 33444444545
No 314
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.63 E-value=2.9e+02 Score=25.70 Aligned_cols=179 Identities=13% Similarity=0.008 Sum_probs=80.9
Q ss_pred HHHHHHccCCHHHHHHHHhhhCCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----------------
Q 008183 242 LIDGYGKAGIVSDARRVFDENLSVLNS-IAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDE----------------- 303 (575)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------- 303 (575)
.+...+..|+.+-+.-+++. -...+. .-++. +...+..|+.+-+..+++.-...|..|+.
T Consensus 56 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (364)
T 3ljn_A 56 ALHLACKFGCVDTAKYLASV-GEVHSLWHGQKP-IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHV 133 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHH-CCCCCCBTTBCH-HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEE
T ss_pred HHHHHHHcCCHHHHHHHHHC-CCCccccCCCCH-HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhcccc
Confidence 34444556666666666655 332222 22222 33344567766666666654444544433
Q ss_pred ---HHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCChhH--HHHHHHHHhccCChHHHHHHHHhCCC-------CC
Q 008183 304 ---YSFLAVLTALCNAG--LAGESEKWIERMKVRYKLEPGLEH--YTCLISAMGRAGRLEDAERIAMAMPF-------EP 369 (575)
Q Consensus 304 ---~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~-------~p 369 (575)
.-.+.|.. .+..| ..+-+..+++ .|..++... ..+.+..-+..|+.+-+..+++.-.. ..
T Consensus 134 ~~~~g~t~L~~-A~~~g~~~~~~v~~Ll~-----~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 207 (364)
T 3ljn_A 134 KHCKGQTALHW-CVGLGPEYLEMIKILVQ-----LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA 207 (364)
T ss_dssp EEESCCCHHHH-HHHSCGGGHHHHHHHHH-----HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC
T ss_pred CCCCCCCHHHH-HHHcCCchHHHHHHHHH-----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc
Confidence 11223333 34455 5554444443 244444211 12233344567788777777765311 11
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008183 370 DAAVWRALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKV 430 (575)
Q Consensus 370 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (575)
|..-++.|.. .+..|+.+-+..+++.-...+..+..-.. -+...+..|+.+-+.-+++.
T Consensus 208 ~~~g~t~L~~-A~~~g~~~~v~~Ll~~gad~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 208 NKQGNSHLHW-AILINWEDVAMRFVEMGIDVNMEDNEHTV-PLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTCCCTTHH-HHTTTCHHHHHHHHTTTCCTTCCCTTSCC-HHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHhChHHHHHHHHHc
Confidence 2222223332 34566665554444432222222221111 23334455666666655554
No 315
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.52 E-value=2.4e+02 Score=26.28 Aligned_cols=50 Identities=10% Similarity=0.063 Sum_probs=23.1
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCCc-chHHHHHHHHHhCCCchHHHHHHHHh
Q 008183 142 VHFYSRFRSPDNAKKVFDEIRERDV-VCYGAMIVGFAQNSRLVDSLSVFADM 192 (575)
Q Consensus 142 i~~~~~~g~~~~A~~~f~~m~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 192 (575)
+...+..|+.+-+.-+++.-...+. .-++.|.. .+..|+.+-+..+++.-
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL-AVMANKTDLVVALVEGA 107 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH-HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH-HHHcCCHHHHHHHHHhc
Confidence 3444455666666555555433322 22233322 34455555554444443
No 316
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.25 E-value=1.6e+02 Score=25.12 Aligned_cols=19 Identities=11% Similarity=-0.071 Sum_probs=10.0
Q ss_pred HHHHHhCCChHHHHHHHHh
Q 008183 142 VHFYSRFRSPDNAKKVFDE 160 (575)
Q Consensus 142 i~~~~~~g~~~~A~~~f~~ 160 (575)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344455566655555544
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.61 E-value=2.3e+02 Score=22.74 Aligned_cols=62 Identities=8% Similarity=0.173 Sum_probs=31.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhccCChH
Q 008183 293 LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGLEHYTCLISAMGRAGRLE 356 (575)
Q Consensus 293 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 356 (575)
.+.+.|++++..-. .++..+...+..-.|.++++.+..+ +...+..|.-.-++.+...|-+.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 35556666444332 3444444445556667777766333 33344444444455666666644
No 318
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.95 E-value=4.4e+02 Score=24.86 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhcCCCCC
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL--AGESEKWIERMKVRYKLEPG 338 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~ 338 (575)
.+.++.-|...|+.++|...++++......+ .+....+..+.-+.++ .+...+++..+. ..++-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~-~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLW-KSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-HTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCCCCH
Confidence 4667778888888888888888875322222 3444555555555432 355667777663 3344433
No 319
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.50 E-value=4.1e+02 Score=24.54 Aligned_cols=128 Identities=9% Similarity=0.064 Sum_probs=74.6
Q ss_pred HHHHHHHHhhCCC--CCcCCChhhHHHHH---HHHhhchhhHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHH
Q 008183 80 SLNIFLSMLRHPT--LSFLPNQRTLASLF---KTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNA 154 (575)
Q Consensus 80 a~~~~~~m~~~~~--~~~~p~~~t~~~ll---~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 154 (575)
|.-+|..+..... .-..|+.......+ ..+.+.. --+++..+.+.|+.|..++..=++..+++.=.++.+
T Consensus 168 aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~-----~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~ 242 (331)
T 3qye_A 168 AFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDY-----HRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFV 242 (331)
T ss_dssp HHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHH-----CHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHH
T ss_pred HHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHH
Confidence 7888887764310 00334433322222 2222222 236788888899999989999999999988889999
Q ss_pred HHHHHhcCC--CCcchHHH--HHH----HHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHHHhcc
Q 008183 155 KKVFDEIRE--RDVVCYGA--MIV----GFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAAAELA 215 (575)
Q Consensus 155 ~~~f~~m~~--~~~~~~~~--li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 215 (575)
.+++|.+-. +....+-+ ++. ...+..+.++.+..++.... ..+......+++-.....
T Consensus 243 lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 243 ARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhCC
Confidence 999997643 22222221 111 12334577888887776432 134455555665544444
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.70 E-value=2e+02 Score=28.77 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh------hHH-HHHHHHHhccCChHHHHHHHHhC
Q 008183 303 EYSFLAVLTALCNAGLAGESEKWIERMKVRYKLEPGL------EHY-TCLISAMGRAGRLEDAERIAMAM 365 (575)
Q Consensus 303 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~~-~~li~~~~~~g~~~~A~~~~~~m 365 (575)
...++.++..|...+.++.|..+..+.. ++... ..| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3556667777777777777777766541 11110 111 12234445567777776666543
No 321
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.51 E-value=3.4e+02 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=10.5
Q ss_pred HHcCChHHHHHHHHHHHHcCC
Q 008183 279 AQQGDQSTVLELFHLLEMRGF 299 (575)
Q Consensus 279 ~~~g~~~~A~~l~~~m~~~g~ 299 (575)
+..|+.+-+..+++.+.+.|.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 344555555555555555443
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.11 E-value=1.1e+02 Score=22.51 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=27.2
Q ss_pred CCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHH
Q 008183 250 GIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVL 288 (575)
Q Consensus 250 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 288 (575)
...+.|.++++. ++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~-L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIID-LETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHH-HTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHH-HHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 357778888887 77777777888888776666655544
No 323
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.11 E-value=5.8e+02 Score=25.54 Aligned_cols=59 Identities=7% Similarity=-0.059 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCCCc-chHHH-------HHHHHHhCCCchHHHHHHHHhHH
Q 008183 136 FCGSALVHFYSRFRSPDNAKKVFDEIRERDV-VCYGA-------MIVGFAQNSRLVDSLSVFADMRS 194 (575)
Q Consensus 136 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-~~~~~-------li~~~~~~g~~~~A~~~~~~m~~ 194 (575)
.++|.|+..|...+.++.|.++.....-|.. .+-+- +...+.-.+++.+|.+.|.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567777777777778888877777655422 22221 23445566777777777766644
No 324
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=22.96 E-value=5.1e+02 Score=24.83 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=48.8
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHhCC--CCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHhcCCCCchhHHH
Q 008183 336 EPGLEHYTCLISAMGRAGRLEDAERIAMAMP--FEPDAAVWR---ALLSFSAIHGKADMASKMGKRLIDINPYDDSAYVI 410 (575)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 410 (575)
.|+...+..++.+|. .+++.+...+++... +..|..... .|..... ...+.++ ..|........
T Consensus 253 ~pei~~l~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEASH-KRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHH
Confidence 455666666666644 567777777777652 445554321 1111110 1111111 34555556666
Q ss_pred HHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 411 VANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
+...+.- ..++++..+-+|...|.
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 6666654 57889999999987765
No 325
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.68 E-value=4.7e+02 Score=27.19 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=23.3
Q ss_pred hhHHHHHHHH-----HhccCChHHHHHHHHhCCCCCC
Q 008183 339 LEHYTCLISA-----MGRAGRLEDAERIAMAMPFEPD 370 (575)
Q Consensus 339 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p~ 370 (575)
..++..|.+. +...|++++|.+.++++++-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3455555443 3678999999999999987774
No 326
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.67 E-value=4.4e+02 Score=23.99 Aligned_cols=265 Identities=12% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCC-CcccH---HHHHHHHhHcCCChHHHHHHHccCC---CCChhhHHHHHHHHhcCch-HHHHHHHHhhC
Q 008183 19 RIVHARALKSSQ-ADRSI---YNNLITNYSKSNLLSYSLRLFNHIP---SPNIVSWTALISAHSNSPL-SLNIFLSMLRH 90 (575)
Q Consensus 19 ~~~~~~~~~~g~-~~~~~---~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-a~~~~~~m~~~ 90 (575)
..+...+++.|. ++... ..+-+..-+..|+.+-+.-+++.-. .++...++.+..+...... ....+..-...
T Consensus 38 ~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T 4g8k_A 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117 (337)
T ss_dssp HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccch
Q ss_pred CCCCcCCChhhHHHHHHHHhhchhhHHHHHHHHHHHHhhCCCCchhHHH------------HHHHHHHhCCChHHHHHHH
Q 008183 91 PTLSFLPNQRTLASLFKTCASLSHAFLFGLSLHSLSLKLSLHDKPFCGS------------ALVHFYSRFRSPDNAKKVF 158 (575)
Q Consensus 91 ~~~~~~p~~~t~~~ll~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~------------~li~~~~~~g~~~~A~~~f 158 (575)
- -..|..-++.+..++.... ..+...+++.|..++..... +-+...++.|+.+-+..++
T Consensus 118 ~---~~~d~~g~t~l~~A~~~~~------~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL 188 (337)
T 4g8k_A 118 V---NECDFYGFTAFMEAAVYGK------VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 188 (337)
T ss_dssp T---TCBCTTCCBHHHHHHHTTC------HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHH
T ss_pred h---hhhccCCCCHHHHHHHcCc------HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHH
Q ss_pred HhcCC----CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHH--HHHHHHHhcccHHHHHHHHHHHHHhCC
Q 008183 159 DEIRE----RDVVCYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVS--GALRAAAELAAMEQCRVIHGHAVVSGL 232 (575)
Q Consensus 159 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~ 232 (575)
++... +|....+.+..+... +.......+.+.+.+.|..+|..... +.+...+..|..+.+..++..--..--
T Consensus 189 ~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn 267 (337)
T 4g8k_A 189 DEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 267 (337)
T ss_dssp HHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT
T ss_pred hccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVLNSIAWNAMMAGYAQQGDQSTVLELFHLLEMRGFAPD 302 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 302 (575)
..|..-.+.|..+ ++.|+.+-+.-+++. -..+|..+ .+..-++.|+.+ +.+.+.+.|-.||
T Consensus 268 ~~d~~G~TpL~~A-~~~g~~~iv~~Ll~~-GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 268 DTDSDGKTALLLA-VELKLKKIAELLCKR-GASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp CBCTTSCBHHHHH-HHTTCHHHHHHHHTT-SCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred CcCCCCCCHHHHH-HHcCCHHHHHHHHHC-CCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
No 327
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.56 E-value=2.5e+02 Score=21.83 Aligned_cols=114 Identities=11% Similarity=-0.015 Sum_probs=52.9
Q ss_pred HHHHHhHcCCChHHHHHHHccCC-C---CChhhHHHHHHHHhcCchHHHHHHHHhhCCCCCcCCChhhHHHHHHHHhhch
Q 008183 38 NLITNYSKSNLLSYSLRLFNHIP-S---PNIVSWTALISAHSNSPLSLNIFLSMLRHPTLSFLPNQRTLASLFKTCASLS 113 (575)
Q Consensus 38 ~li~~~~~~g~~~~A~~~f~~m~-~---~~~~~~~~li~~~~~~g~a~~~~~~m~~~~~~~~~p~~~t~~~ll~~~~~~~ 113 (575)
..+...++.|+.+.+..+++... . +|..-++.+.. +..|. .++++.+.+.|...-.+|....+.+..++ ..|
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~ 79 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGS-TAIALELLKQGASPNVQDTSGTSPVHDAA-RTG 79 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--SCTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTT
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH--HHcCC-HHHHHHHHHCCCCCCCcCCCCCCHHHHHH-HcC
Confidence 34555677888888888887721 2 23333444444 44554 23334444445111122333333333333 334
Q ss_pred hhHHHHHHHHHHHHhhCCCCchh--HHHHHHHHHHhCCChHHHHHHHHh
Q 008183 114 HAFLFGLSLHSLSLKLSLHDKPF--CGSALVHFYSRFRSPDNAKKVFDE 160 (575)
Q Consensus 114 ~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~ 160 (575)
..+..+ .+++.|..++.. ...+.+...++.|+.+-+.-+++.
T Consensus 80 -~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 80 -FLDTLK----VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp -CHHHHH----HHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred -cHHHHH----HHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 554333 344455443321 112233444455666655555554
No 328
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.53 E-value=3.8e+02 Score=24.77 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHccCCHHHHHHHHhhhCC
Q 008183 222 VIHGHAVVSGLDRNVIVGTGLIDGYGKAGIVSDARRVFDENLS 264 (575)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 264 (575)
+++..+.+.|+.|..+...-++..+++.=.++.+..+++..+.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~ 251 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFL 251 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHH
Confidence 4566666777777777777777777776667777777776443
No 329
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=22.17 E-value=6.1e+02 Score=25.44 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHH-----HHHHHHhcCCCCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCC
Q 008183 368 EPDAAVWRALLSFSAIHGKADMASK-----MGKRLIDINPYDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRV 436 (575)
Q Consensus 368 ~p~~~~~~~ll~~~~~~g~~~~a~~-----~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 436 (575)
.+|......|-.-+...|..++-++ +...+.+..|.+......|-..|.+.|++-+|.+++..+...+.
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 4555555566666666665444322 11111223355555667788888999999999999988887643
No 330
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=21.94 E-value=6.6e+02 Score=25.79 Aligned_cols=391 Identities=8% Similarity=-0.033 Sum_probs=181.3
Q ss_pred HHHHHHHHhhCC--CcccHHHHHHHHhHcCCChHHHHHHHccCCCCChhhHHHHHHHHhcCch---HHHHHHHHhhCCCC
Q 008183 19 RIVHARALKSSQ--ADRSIYNNLITNYSKSNLLSYSLRLFNHIPSPNIVSWTALISAHSNSPL---SLNIFLSMLRHPTL 93 (575)
Q Consensus 19 ~~~~~~~~~~g~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~---a~~~~~~m~~~~~~ 93 (575)
.++-..+.+..- ....+-+.-+..+++.+++......+.. ++.+...--....+....|+ |......+-..|
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-- 132 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-- 132 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--
Confidence 355555544432 2233445556777788888888887776 43333333334445555555 566666665554
Q ss_pred CcCCChhhHHHHHHHHhhchhhHH--HHHHHHHHHHhhC-----------CCCch-hHHHHHHHHHHhCCChHHHHHHHH
Q 008183 94 SFLPNQRTLASLFKTCASLSHAFL--FGLSLHSLSLKLS-----------LHDKP-FCGSALVHFYSRFRSPDNAKKVFD 159 (575)
Q Consensus 94 ~~~p~~~t~~~ll~~~~~~~~~~~--~a~~~~~~~~~~g-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~f~ 159 (575)
.........++..+.+.| .+. ...+=...+...| ++++. .....++..+.+- ..+.....
T Consensus 133 --~~~p~~c~~l~~~~~~~g-~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~ 206 (618)
T 1qsa_A 133 --KSQPNACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFAR 206 (618)
T ss_dssp --SCCCTHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHh
Confidence 223345556666666444 211 1111111111111 11111 1122222222221 22222222
Q ss_pred hcCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCcCHHHHHHHHHHH----HhcccHHHHHHHHHHHHHhCC
Q 008183 160 EIRERDVV---CYGAMIVGFAQNSRLVDSLSVFADMRSSDVGSTMYCVSGALRAA----AELAAMEQCRVIHGHAVVSGL 232 (575)
Q Consensus 160 ~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~ 232 (575)
.. .++.. .+...+.-+.+. +.+.|..+|....... ..+......+-... ...+...++...+......
T Consensus 207 ~~-~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-- 281 (618)
T 1qsa_A 207 TT-GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-- 281 (618)
T ss_dssp HS-CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--
T ss_pred cc-CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--
Confidence 21 11111 111123333333 6778888887775433 22333222222222 2233233444444444333
Q ss_pred CCchhHHHHHHHHHHccCCHHHHHHHHhhhCCCC--ChhhH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008183 233 DRNVIVGTGLIDGYGKAGIVSDARRVFDENLSVL--NSIAW-NAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAV 309 (575)
Q Consensus 233 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 309 (575)
..+.....-.+....+.|+++.|.+.|+. ++.. +..-| -=+..++...|+.++|..+|+.+... . +|-.+
T Consensus 282 ~~~~~~~e~~~r~Alr~~d~~~a~~~~~~-l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~ 354 (618)
T 1qsa_A 282 SQSTSLIERRVRMALGTGDRRGLNTWLAR-LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPM 354 (618)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHH-SCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHH-ccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHH
Confidence 23333333344444566888888888888 6532 11111 11334566778888888888887642 1 34333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hh-----HHHHHHHHHhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008183 310 LTALCNAGLAGESEKWIERMKVRYKLEPG-LE-----HYTCLISAMGRAGRLEDAERIAMAMPFEPDAAVWRALLSFSAI 383 (575)
Q Consensus 310 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 383 (575)
+.+ .+.|.... + ......+. .. .--.-+..+...|...+|...+....-..+......+......
T Consensus 355 lAa-~~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~ 425 (618)
T 1qsa_A 355 VAA-QRIGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFN 425 (618)
T ss_dssp HHH-HHTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHH-HHcCCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 322 22221000 0 00001110 00 1112244567788888888776665213344433444444556
Q ss_pred cCChHHHHHHHHHHHhcCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHhhCCCccC
Q 008183 384 HGKADMASKMGKRLIDINP---YDDSAYVIVANVLSGVGRWDEVAEVRKVMKDRRVRKE 439 (575)
Q Consensus 384 ~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 439 (575)
.|..+.+.....+....+. .-+..|...+.-+.+.-.++...-.---..+.++.|.
T Consensus 426 ~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 426 NQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp TTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred CCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 7778777766554333220 1123466677777776666665444333455666554
No 331
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.88 E-value=1.5e+02 Score=22.88 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=25.1
Q ss_pred HHHHhHHCCCCcCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 008183 188 VFADMRSSDVGSTMYCVSGALRAAAELAAMEQCRVIHGHAVV 229 (575)
Q Consensus 188 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 229 (575)
+|+.+.+..+.|+...-..-+..+...++++.|.++|..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555655544444444455566777777777777665
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.87 E-value=2.9e+02 Score=21.89 Aligned_cols=30 Identities=0% Similarity=-0.064 Sum_probs=12.2
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCcCHHH
Q 008183 174 VGFAQNSRLVDSLSVFADMRSSDVGSTMYC 203 (575)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 203 (575)
..+...+..-.|.++++.+.+.+...+..|
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aT 58 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVAT 58 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhh
Confidence 333333334444444444444433333333
No 333
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.59 E-value=2.3e+02 Score=20.39 Aligned_cols=66 Identities=6% Similarity=-0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHHhCCChHHHHHHHHhcCCCCcchHHHHHHHHHhCCCchHHHHH
Q 008183 119 GLSLHSLSLKLSLHDKPFCGSALVHFYSRFRSPDNAKKVFDEIRERDVVCYGAMIVGFAQNSRLVDSLSV 188 (575)
Q Consensus 119 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 188 (575)
...+++.+.+.|+-.....-...-. ....+.|.++++.++.+...+|..++.++.+.+...-|..+
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~----~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNE----PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTS----SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcC----CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHHH
No 334
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.25 E-value=4.8e+02 Score=23.94 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 008183 271 WNAMMAGYAQQGDQSTVLELFHLLEMRGFAPDEYSFLAVLTALCNAGL--AGESEKWIERMK 330 (575)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~ 330 (575)
.+.++.-|...|+.++|...++++...... ..+....+..+.-+.++ .+....++..+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~ 229 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLW 229 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Confidence 456677777788888888887777532222 13444455555554332 345666666663
No 335
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.97 E-value=2e+02 Score=22.49 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=7.1
Q ss_pred HHccCCHHHHHHHHh
Q 008183 246 YGKAGIVSDARRVFD 260 (575)
Q Consensus 246 ~~~~g~~~~A~~~~~ 260 (575)
.++.|+.+-+.-+++
T Consensus 108 A~~~~~~~~v~~Ll~ 122 (156)
T 1bd8_A 108 AVQEGHTAVVSFLAA 122 (156)
T ss_dssp HHHHTCHHHHHHHHT
T ss_pred HHHhChHHHHHHHHh
Confidence 344455554444443
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.76 E-value=1.9e+02 Score=23.57 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhccCChHH
Q 008183 285 STVLELFH-LLEMRGFAPDEYSFLAVLTALCNAGLAGESEKWIERMKVRY-KLEPGLEHYTCLISAMGRAGRLED 357 (575)
Q Consensus 285 ~~A~~l~~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~~~~ 357 (575)
+.+++-+. .+.+.|++++..- ..++..+...+..-.|.++++.+..+. +...+..|.-.-++.+...|-+.+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 44444443 3456688876544 345666666677778888888884331 334454444455567777877643
No 337
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.14 E-value=5.5e+02 Score=24.21 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=44.1
Q ss_pred HHHHHHHHhHcCCChHHHHHHHccCCCCC----hhhHHHHHHHHhcCch----HHHHHHHHhhCC
Q 008183 35 IYNNLITNYSKSNLLSYSLRLFNHIPSPN----IVSWTALISAHSNSPL----SLNIFLSMLRHP 91 (575)
Q Consensus 35 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~----a~~~~~~m~~~~ 91 (575)
....+|.-|...|++++|...++++..|+ .+.+..+..++-+... +..++..+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~ 78 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEG 78 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCC
Confidence 35788999999999999999999998775 3455566666655543 778888888765
Done!