Query 008184
Match_columns 574
No_of_seqs 282 out of 1603
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 20:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0797 Actin-related protein 100.0 3.7E-80 8.1E-85 633.1 23.3 537 1-558 16-615 (618)
2 KOG0676 Actin and related prot 100.0 2.2E-77 4.8E-82 614.8 26.2 363 17-558 6-372 (372)
3 PTZ00452 actin; Provisional 100.0 2.3E-76 4.9E-81 625.3 32.4 367 18-558 5-375 (375)
4 PTZ00466 actin-like protein; P 100.0 6.9E-76 1.5E-80 622.2 33.4 365 18-558 12-380 (380)
5 PTZ00281 actin; Provisional 100.0 2.3E-74 5E-79 611.3 32.8 367 18-558 6-376 (376)
6 PTZ00004 actin-2; Provisional 100.0 5.9E-72 1.3E-76 593.6 33.8 369 17-558 5-378 (378)
7 KOG0679 Actin-related protein 100.0 1.3E-71 2.7E-76 555.7 26.6 382 18-557 11-425 (426)
8 PTZ00280 Actin-related protein 100.0 6.7E-70 1.5E-74 584.7 33.4 377 18-557 4-409 (414)
9 KOG0677 Actin-related protein 100.0 8.7E-71 1.9E-75 522.9 19.5 369 17-554 3-384 (389)
10 PF00022 Actin: Actin; InterP 100.0 1.4E-68 3.1E-73 571.8 22.4 377 17-558 3-393 (393)
11 smart00268 ACTIN Actin. ACTIN 100.0 1.6E-65 3.6E-70 544.5 33.2 367 19-558 2-373 (373)
12 KOG0680 Actin-related protein 100.0 2E-64 4.2E-69 492.7 25.5 373 17-558 2-399 (400)
13 cd00012 ACTIN Actin; An ubiqui 100.0 1.3E-63 2.8E-68 529.6 31.8 367 20-556 1-371 (371)
14 COG5277 Actin and related prot 100.0 9.2E-64 2E-68 532.1 27.3 360 152-558 52-444 (444)
15 KOG0678 Actin-related protein 100.0 2E-50 4.2E-55 395.0 13.2 381 17-554 3-406 (415)
16 KOG0681 Actin-related protein 100.0 4.2E-45 9.1E-50 377.8 18.9 407 16-558 21-640 (645)
17 PRK13930 rod shape-determining 100.0 3.5E-32 7.6E-37 284.8 20.4 274 153-531 46-327 (335)
18 PRK13927 rod shape-determining 100.0 3.6E-32 7.9E-37 284.7 20.3 310 18-531 5-323 (334)
19 TIGR00904 mreB cell shape dete 100.0 6.1E-29 1.3E-33 260.2 20.4 273 154-531 45-326 (333)
20 PRK13929 rod-share determining 99.9 9.3E-27 2E-31 243.6 21.5 263 154-529 43-323 (335)
21 PRK13928 rod shape-determining 99.9 1.1E-24 2.4E-29 228.2 19.5 270 154-531 42-322 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 8.6E-23 1.9E-27 210.2 17.3 268 154-529 40-318 (326)
23 COG1077 MreB Actin-like ATPase 99.7 1.5E-15 3.3E-20 151.6 16.3 269 154-529 47-328 (342)
24 TIGR02529 EutJ ethanolamine ut 99.5 3.6E-12 7.7E-17 127.1 18.5 134 173-339 29-165 (239)
25 PRK15080 ethanolamine utilizat 99.2 2.8E-10 6E-15 115.5 17.1 134 172-338 55-191 (267)
26 CHL00094 dnaK heat shock prote 99.1 1.7E-09 3.6E-14 122.5 17.5 92 219-311 138-237 (621)
27 PLN03184 chloroplast Hsp70; Pr 99.1 4.7E-09 1E-13 119.5 19.5 115 191-311 149-274 (673)
28 PTZ00400 DnaK-type molecular c 99.1 3.2E-09 6.9E-14 120.8 17.1 92 219-311 177-276 (663)
29 PRK00290 dnaK molecular chaper 99.0 4.7E-09 1E-13 119.1 14.8 92 219-311 136-235 (627)
30 TIGR02350 prok_dnaK chaperone 99.0 1.8E-09 3.8E-14 122.0 11.1 91 219-310 133-232 (595)
31 PRK13411 molecular chaperone D 99.0 6.9E-09 1.5E-13 118.0 15.7 110 195-311 118-236 (653)
32 TIGR01991 HscA Fe-S protein as 99.0 6.2E-09 1.3E-13 117.3 14.3 111 195-312 114-232 (599)
33 PTZ00186 heat shock 70 kDa pre 99.0 7.1E-09 1.5E-13 117.4 14.8 92 219-311 163-262 (657)
34 PRK13410 molecular chaperone D 98.9 2.3E-08 4.9E-13 113.7 15.8 110 195-311 120-237 (668)
35 PRK09472 ftsA cell division pr 98.8 1.6E-08 3.4E-13 109.4 11.0 94 230-342 166-264 (420)
36 PTZ00009 heat shock 70 kDa pro 98.8 4.7E-08 1E-12 111.3 15.3 91 219-310 143-243 (653)
37 TIGR01174 ftsA cell division p 98.8 1.3E-07 2.8E-12 100.7 15.7 87 239-343 166-257 (371)
38 PRK01433 hscA chaperone protei 98.6 1.5E-07 3.3E-12 105.6 10.7 93 219-312 144-244 (595)
39 PRK05183 hscA chaperone protei 98.6 5.6E-07 1.2E-11 101.9 14.4 93 219-312 152-252 (616)
40 COG0849 ftsA Cell division ATP 98.4 9.7E-07 2.1E-11 94.0 10.7 91 234-342 168-263 (418)
41 COG0443 DnaK Molecular chapero 98.4 5E-06 1.1E-10 93.2 15.6 110 194-310 104-221 (579)
42 PRK11678 putative chaperone; P 98.3 2.6E-05 5.6E-10 84.9 16.9 86 219-306 152-260 (450)
43 PF00012 HSP70: Hsp70 protein; 98.2 4.2E-06 9.1E-11 94.8 9.8 92 219-311 138-238 (602)
44 TIGR01175 pilM type IV pilus a 98.1 5.9E-05 1.3E-09 79.5 15.3 91 230-339 143-245 (348)
45 PF11104 PilM_2: Type IV pilus 97.6 0.00043 9.4E-09 72.9 10.5 128 191-338 86-236 (340)
46 PRK13917 plasmid segregation p 97.4 0.00099 2.1E-08 70.2 10.7 69 243-311 151-232 (344)
47 TIGR03739 PRTRC_D PRTRC system 96.9 0.0044 9.5E-08 64.7 9.5 113 193-312 84-215 (320)
48 COG4972 PilM Tfp pilus assembl 96.5 0.21 4.5E-06 51.3 17.5 116 191-309 99-236 (354)
49 KOG0100 Molecular chaperones G 95.8 0.041 8.9E-07 57.4 8.7 88 219-307 175-271 (663)
50 KOG0101 Molecular chaperones H 95.5 0.075 1.6E-06 59.3 10.3 89 219-308 146-244 (620)
51 COG4820 EutJ Ethanolamine util 95.5 0.0062 1.3E-07 57.8 1.3 66 239-306 115-180 (277)
52 PRK10719 eutA reactivating fac 95.4 0.025 5.4E-07 61.0 6.0 110 191-304 64-184 (475)
53 KOG0104 Molecular chaperones G 94.3 0.65 1.4E-05 52.4 13.1 92 219-311 161-275 (902)
54 TIGR00241 CoA_E_activ CoA-subs 92.5 0.44 9.6E-06 47.7 7.8 100 191-309 33-137 (248)
55 KOG0103 Molecular chaperones H 92.3 5.6 0.00012 44.9 16.4 92 219-311 140-246 (727)
56 PF06406 StbA: StbA protein; 91.5 0.27 5.9E-06 51.2 5.2 70 242-311 137-212 (318)
57 PF06277 EutA: Ethanolamine ut 90.1 1.3 2.8E-05 48.0 8.8 118 171-301 50-178 (473)
58 PF08841 DDR: Diol dehydratase 87.5 4.1 8.8E-05 41.2 9.5 88 233-338 98-191 (332)
59 PF14450 FtsA: Cell division p 86.3 3.2 6.9E-05 36.6 7.5 58 267-342 2-70 (120)
60 PF02541 Ppx-GppA: Ppx/GppA ph 85.8 1.6 3.4E-05 44.6 6.1 71 234-306 75-152 (285)
61 PF01968 Hydantoinase_A: Hydan 85.4 1 2.2E-05 46.3 4.4 32 257-288 69-101 (290)
62 TIGR03123 one_C_unchar_1 proba 81.2 9.9 0.00022 39.6 9.6 91 193-289 36-153 (318)
63 TIGR03706 exo_poly_only exopol 72.7 14 0.0003 38.1 8.0 84 220-306 75-165 (300)
64 TIGR02261 benz_CoA_red_D benzo 70.4 1.7 3.7E-05 43.9 0.6 71 450-530 191-262 (262)
65 PRK11031 guanosine pentaphosph 69.9 21 0.00045 39.7 9.1 69 234-305 95-171 (496)
66 TIGR03192 benz_CoA_bzdQ benzoy 69.5 1.3 2.7E-05 45.5 -0.6 68 450-531 220-287 (293)
67 TIGR02259 benz_CoA_red_A benzo 68.4 2.2 4.8E-05 45.4 0.9 53 471-530 380-432 (432)
68 COG1548 Predicted transcriptio 66.0 4.1 8.8E-05 40.7 2.2 23 264-286 130-152 (330)
69 TIGR03286 methan_mark_15 putat 64.9 1.9 4E-05 46.1 -0.4 68 450-531 335-402 (404)
70 KOG0102 Molecular chaperones m 62.7 63 0.0014 35.9 10.4 92 219-311 163-262 (640)
71 COG0248 GppA Exopolyphosphatas 52.0 10 0.00023 41.9 2.6 71 234-306 92-169 (492)
72 PRK10854 exopolyphosphatase; P 51.4 54 0.0012 36.6 8.2 68 234-304 100-175 (513)
73 PF08735 DUF1786: Putative pyr 50.3 33 0.00071 34.5 5.5 47 240-287 137-190 (254)
74 PRK13317 pantothenate kinase; 48.4 7.5 0.00016 39.7 0.8 73 450-531 200-273 (277)
75 COG4819 EutA Ethanolamine util 41.2 1.3E+02 0.0028 31.5 8.2 107 191-301 63-180 (473)
76 COG0145 HyuA N-methylhydantoin 40.4 28 0.0006 40.2 3.8 32 257-288 269-302 (674)
77 COG1924 Activator of 2-hydroxy 39.6 9.7 0.00021 40.2 -0.0 44 476-531 346-389 (396)
78 PF03702 UPF0075: Uncharacteri 35.4 22 0.00049 37.7 1.9 26 473-498 285-310 (364)
79 PRK03011 butyrate kinase; Prov 31.3 27 0.00058 37.1 1.7 25 18-42 2-26 (358)
80 COG4012 Uncharacterized protei 29.8 3.5E+02 0.0075 27.5 8.9 40 248-287 207-250 (342)
81 COG4820 EutJ Ethanolamine util 24.5 60 0.0013 31.5 2.5 25 473-497 227-251 (277)
82 PF01869 BcrAD_BadFG: BadF/Bad 22.9 7.5 0.00016 39.3 -4.2 66 452-530 206-271 (271)
83 TIGR03286 methan_mark_15 putat 21.7 3.1E+02 0.0067 29.7 7.5 102 191-307 177-286 (404)
84 PF00871 Acetate_kinase: Aceto 21.7 44 0.00095 35.9 1.2 27 264-291 199-225 (388)
85 PRK09585 anmK anhydro-N-acetyl 21.0 66 0.0014 34.3 2.3 24 474-497 288-311 (365)
86 PF03612 EIIBC-GUT_N: Sorbitol 20.9 87 0.0019 29.7 2.8 41 2-52 52-93 (183)
No 1
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-80 Score=633.08 Aligned_cols=537 Identities=39% Similarity=0.663 Sum_probs=396.6
Q ss_pred CCcccccCchhhHhhcCCCeEEEcCCCceeeeecCCCCCCCccceeeeeecCCCC-CcchhhHhhhhcCCCCcchhhh--
Q 008184 1 MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVP-KRNVVDQIASLMKIPFLDEEVA-- 77 (574)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~iVi~~GS~~lkiG~a~d~~P~~iP~~ia~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-- 77 (574)
++|.+.+.++|...+++.++||||+||.|+|||+|.|..|.++||||||++++.. ++.... +.+... ..|+.+
T Consensus 16 ~p~~~g~ee~q~~e~ed~k~ivih~gsqnlrig~a~d~np~tv~~~iar~~rap~sdr~~~~---p~l~p~-~~e~~n~~ 91 (618)
T KOG0797|consen 16 QPYLKGVEETQILEEEDAKLIVIHLGSQNLRIGLAMDENPFTVPNCIARYIRAPVSDRMLNT---PVLTPQ-HVEERNYN 91 (618)
T ss_pred CCcccCCCccccccccCCCeeEecCCcchhhccccccCCCcccccceeecccCchhhhcccC---cCCCcc-cccccccc
Confidence 4789999999999999999999999999999999999999999999999987621 000000 000000 001100
Q ss_pred -cCCcccccccccchhcccccccccccccccccCCCCCCCccccccccccCCCccccCCCCCCcccccccc-------cc
Q 008184 78 -NNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSS-------ER 149 (574)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~-------~~ 149 (574)
-..|.+.| -.++.+ +.....+. +.++.-.|...++.+||+-+++|++|..+.......|.+ +.
T Consensus 92 ~~~ef~~~l----ll~~s~----lss~~~~k-k~ri~v~~~~q~lkn~n~~S~aetvP~ps~~~a~~~wld~e~~~hv~v 162 (618)
T KOG0797|consen 92 SAAEFLKIL----LLDESS----LSSSASRK-KGRIDVYNQAQTLKNDNVASPAETVPDPSASEAVPDWLDSEDTSHVKV 162 (618)
T ss_pred chhhhhHHH----HHhhhh----hhhHHHhh-cCcccccCchHHhhcccccCccccCCCCCCCcCCCCccccccchHHHH
Confidence 01111100 000111 11111111 234445588899999999999999996542222222221 12
Q ss_pred CCCceEEccccccCCCCCCceEecceecCeeeec-CCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCC
Q 008184 150 KFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFD 228 (574)
Q Consensus 150 ~~~~~~vG~eal~~~~~~~~~l~~Pi~~G~i~~~-~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~ 228 (574)
..++-.+|++|..++ +|.|++||++|.||++ +|+|.|+...|+++||+|++.+.|+|+++...+|++|||+|+.|.
T Consensus 163 ~c~kr~~~ee~n~i~---~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~ 239 (618)
T KOG0797|consen 163 KCRKRIFGEEANKIS---PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFD 239 (618)
T ss_pred HHHHHHhhhhhhcCC---cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhh
Confidence 234556777777764 8999999999999997 778999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHH
Q 008184 229 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWT 308 (574)
Q Consensus 229 ~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~l 308 (574)
++++++++.++|-+++|.++.++|+++||+||+|.+++||||||+++|+|+||.||.++++++++++|||+|||++|.++
T Consensus 240 r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~l 319 (618)
T KOG0797|consen 240 RRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWL 319 (618)
T ss_pred HHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccccccccccCCCCCC-CceeEee---eecCCCCcCCCCcc
Q 008184 309 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLI---ALNVPPMGLFYPKL 384 (574)
Q Consensus 309 L~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~y~~~~p~~-~~k~~~~---~~~~ap~~lf~p~~ 384 (574)
|++. .|| |.++++...+||.++++|||++|++..++.........+. .|++ +.+|+|+ +.++|||++|+|.+
T Consensus 320 l~rs-~FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R--~pn~~~~kytfk~~DE~mlAPlaLF~P~l 395 (618)
T KOG0797|consen 320 LRRS-GFP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYR--EPNPPTLKYTFKLGDEVMLAPLALFYPNL 395 (618)
T ss_pred HHhc-CCC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhcc--CCCCcceeeeeeccchhhccchhhhhhhh
Confidence 9874 466 5677888899999999999999999976654432222222 3332 3466654 57899999999999
Q ss_pred cCCCC--------CCCCCCCCCCCccccccCCccccCC------------------CCCCCCCCCCCCCCCCCCCCCCCC
Q 008184 385 LVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFP------------------RRSDISDNFYPGINVGLPMWESYP 438 (574)
Q Consensus 385 ~~~e~--------~~~p~~~~~~d~~d~~~d~~~~~~~------------------er~~~~E~lF~~~~g~~~~~~~~~ 438 (574)
+..+. +..|.+.++.|++-.+.+++....+ -|-..+|..-.+..| ....+.+.
T Consensus 396 f~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg-~t~~d~f~ 474 (618)
T KOG0797|consen 396 FVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELG-VTLKDNFA 474 (618)
T ss_pred hhccccccccccccCCCCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhc-cccccccC
Confidence 87665 3444444433333222222211110 011111111100000 00000110
Q ss_pred cc------------------CCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhC
Q 008184 439 VL------------------TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI 500 (574)
Q Consensus 439 ~~------------------~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~ 500 (574)
+. -......-..+|.++|..||..|...|.+++||++|+++||+.++|||.+.|++++...+
T Consensus 475 p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~ 554 (618)
T KOG0797|consen 475 PLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAI 554 (618)
T ss_pred CchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccC
Confidence 00 000000112367888999999987889999999999999999999999999999999888
Q ss_pred CC-CCCcceEEEcCCC--CCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184 501 PS-NEAIDMVEVLQSR--TNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 558 (574)
Q Consensus 501 p~-~~~i~~V~v~~~~--~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~ 558 (574)
|+ ...+..|.|++++ +||++.+||||+|||.|+..+++||++.||..+|.|++..||+
T Consensus 555 pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 555 PPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred CccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 87 4457789999876 8999999999999999999999999999999999999999986
No 2
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.2e-77 Score=614.80 Aligned_cols=363 Identities=24% Similarity=0.427 Sum_probs=309.8
Q ss_pred CCCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhccc
Q 008184 17 GSNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQN 95 (574)
Q Consensus 17 ~~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (574)
.+.+||||+||+.+|+|||+|..| .++|++|+|++++.... +
T Consensus 6 ~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~--------------------------------~----- 48 (372)
T KOG0676|consen 6 DIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMA--------------------------------G----- 48 (372)
T ss_pred CcceEEEECCCceeecccCCCCCCceecceeccccccccccc--------------------------------c-----
Confidence 468999999999999999999999 99999999877652100 0
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEecce
Q 008184 96 SRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPI 175 (574)
Q Consensus 96 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi 175 (574)
...++.+||++|.... .|+|||
T Consensus 49 -----------------------------------------------------~~~~~~~vg~~a~~~~-----~l~~Pi 70 (372)
T KOG0676|consen 49 -----------------------------------------------------MTQKDTYVGDEAESKR-----TLKYPI 70 (372)
T ss_pred -----------------------------------------------------ccccccccchhhhccc-----cccCcc
Confidence 0115678999999752 889999
Q ss_pred ecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHH-HHHHHHHhcCCCeEEEehhh
Q 008184 176 RRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEG 254 (574)
Q Consensus 176 ~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~-~~eilFE~~~~~~v~~~~~s 254 (574)
+||+|+ |||+|+.||+|+|++.|.++|+++ |||+||++++++.+|+ |+|+|||.|++|++|++.++
T Consensus 71 e~Giv~---------~wd~me~iw~~if~~~L~~~Pee~----pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qa 137 (372)
T KOG0676|consen 71 ERGIVT---------DWDDMEKIWHHLFYSELLVAPEEH----PVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQA 137 (372)
T ss_pred cccccc---------chHHHHHHHHHHHHHhhccCcccC----ceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHH
Confidence 999999 999999999999999999999998 8999999999999985 99999999999999998877
Q ss_pred HHHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHH
Q 008184 255 LAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNR 334 (574)
Q Consensus 255 vla~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~ 334 (574)
++ |++|++||||||+|++.|+++||+||+++++++.++++||+|+|++|+.+|.+++ +++....+++++++
T Consensus 138 vl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g-------~s~~~~~~~eIv~d 208 (372)
T KOG0676|consen 138 VL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRG-------YSFTTSAEFEIVRD 208 (372)
T ss_pred HH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcc-------cccccccHHHHHHH
Confidence 77 9999999999999999999999999999999999999999999999999887765 35777788999999
Q ss_pred HHHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC
Q 008184 335 IKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP 414 (574)
Q Consensus 335 lKe~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~ 414 (574)
+||++||++.+ . ++++........+. .+|+ ++|+..+.++
T Consensus 209 iKeklCyvald-~---------~~e~~~~~~~~~l~----------------------------~~y~--lPDg~~i~i~ 248 (372)
T KOG0676|consen 209 IKEKLCYVALD-F---------EEEEETANTSSSLE----------------------------SSYE--LPDGQKITIG 248 (372)
T ss_pred hHhhhcccccc-c---------chhhhccccccccc----------------------------cccc--CCCCCEEecC
Confidence 99999999862 2 11111000000000 0111 4455555553
Q ss_pred -CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHH
Q 008184 415 -RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAV 492 (574)
Q Consensus 415 -er~~~~E~lF-~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL 492 (574)
+||.++|.+| |+..| .+..||++++.+||.+| |.|+|+.||+||||+||+|++|||.+||
T Consensus 249 ~erf~~pE~lFqP~~~g-----------------~e~~gi~~~~~~sI~kc-d~dlrk~L~~nivLsGGtT~~pGl~~Rl 310 (372)
T KOG0676|consen 249 NERFRCPEVLFQPSLLG-----------------MESPGIHELTVNSIMKC-DIDLRKDLYENIVLSGGTTMFPGLADRL 310 (372)
T ss_pred CcccccchhcCChhhcC-----------------CCCCchhHHHHHHHHhC-ChhHhHHHHhheEEeCCcccchhHHHHH
Confidence 8999999999 55555 57889999999999999 9999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184 493 EERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 558 (574)
Q Consensus 493 ~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~ 558 (574)
++||+.+.|... +++|+++ .++.+++|+||||+|+|++|++|||||+||+|.|++++|||||
T Consensus 311 ~kEl~~l~P~~~---~ikv~~p-p~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 311 QKELQALAPSTI---KIKVIAP-PERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred HHHHhhcCCCCc---ceEEecC-cccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 999999999776 4577763 5788999999999999999999999999999999999999997
No 3
>PTZ00452 actin; Provisional
Probab=100.00 E-value=2.3e-76 Score=625.31 Aligned_cols=367 Identities=22% Similarity=0.374 Sum_probs=310.4
Q ss_pred CCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhcccc
Q 008184 18 SNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS 96 (574)
Q Consensus 18 ~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (574)
..+||||+||+++|+|+|++..| .+||++|++++..... . +
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~--------------------~------------~------ 46 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGI--------------------F------------S------ 46 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCcccc--------------------c------------c------
Confidence 35899999999999999999999 7999999997643100 0 0
Q ss_pred cccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEeccee
Q 008184 97 RKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIR 176 (574)
Q Consensus 97 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi~ 176 (574)
...+++++|++|... +..+.+++||+
T Consensus 47 ----------------------------------------------------~~~~~~~iG~~~~~~--~~~~~l~~Pi~ 72 (375)
T PTZ00452 47 ----------------------------------------------------TFNKEYYVGEEAQAK--RGVLAIKEPIQ 72 (375)
T ss_pred ----------------------------------------------------ccccceEEChhhhcc--ccCcEEcccCc
Confidence 001457899999763 56899999999
Q ss_pred cCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHH-HHHHHHHhcCCCeEEEehhhH
Q 008184 177 RGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGL 255 (574)
Q Consensus 177 ~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~-~~eilFE~~~~~~v~~~~~sv 255 (574)
+|.|. |||++|.||+|+|.+.|+++|+++ |||++|++++++..|+ |+|+|||+|++|+++++.+++
T Consensus 73 ~G~I~---------dwd~~e~iw~~~f~~~l~v~p~~~----pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~ 139 (375)
T PTZ00452 73 NGIIN---------SWDDIEIIWHHAFYNELCMSPEDQ----PVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAV 139 (375)
T ss_pred CCEEc---------CHHHHHHHHHHHHHhhcCCCcccC----ceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHH
Confidence 99998 999999999999999999999999 8999999999888884 999999999999999999999
Q ss_pred HHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHH
Q 008184 256 AAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRI 335 (574)
Q Consensus 256 la~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~l 335 (574)
||+||+|++||||||+|++.|+|+||+||+++++++.++++||+++|++|.++|+.++. ++....+..+++++
T Consensus 140 lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~-------~~~~~~~~~~~~~i 212 (375)
T PTZ00452 140 LSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGY-------SLTEPHQRIIVKNI 212 (375)
T ss_pred HHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987652 45445678899999
Q ss_pred HHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-
Q 008184 336 KESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP- 414 (574)
Q Consensus 336 Ke~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~- 414 (574)
||++|||+.+..+. ...+.. .. .. + ..| .+||+..+.++
T Consensus 213 Ke~~c~v~~d~~~e---~~~~~~-~~-~~-----------------------~----------~~y--~LPDg~~i~l~~ 252 (375)
T PTZ00452 213 KERLCYTALDPQDE---KRIYKE-SN-SQ-----------------------D----------SPY--KLPDGNILTIKS 252 (375)
T ss_pred HHHhccccCcHHHH---HHHhhc-cC-Cc-----------------------C----------ceE--ECCCCCEEEeeh
Confidence 99999998531100 000000 00 00 0 001 24555566664
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHH
Q 008184 415 RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVE 493 (574)
Q Consensus 415 er~~~~E~lF-~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~ 493 (574)
|||.++|.|| |...| .+..||+++|.+||.+| |.|+|+.|++||||+||+|+||||.+||+
T Consensus 253 er~~~~E~LF~P~~~g-----------------~~~~gi~~~i~~si~~c-~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~ 314 (375)
T PTZ00452 253 QKFRCSEILFQPKLIG-----------------LEVAGIHHLAYSSIKKC-DLDLRQELCRNIVLSGGTTLFPGIANRLS 314 (375)
T ss_pred HHhcCcccccChhhcC-----------------CCCCChhHHHHHHHHhC-CHhHHHHhhccEEEecccccccCHHHHHH
Confidence 8999999999 55444 46679999999999999 99999999999999999999999999999
Q ss_pred HHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184 494 ERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 558 (574)
Q Consensus 494 ~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~ 558 (574)
+||..++|... +|+|.. +.+|++++|+||||||++++|+++||||+||+|+|.++++||||
T Consensus 315 ~El~~~~p~~~---~v~v~~-~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 315 NELTNLVPSQL---KIQVAA-PPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred HHHHHhCCCCc---eeEEec-CCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 99999998764 567775 35899999999999999999999999999999999999999996
No 4
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=6.9e-76 Score=622.24 Aligned_cols=365 Identities=19% Similarity=0.368 Sum_probs=308.5
Q ss_pred CCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhcccc
Q 008184 18 SNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS 96 (574)
Q Consensus 18 ~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (574)
.++||||+||+++|+|||+|..| +++|++||+++..... . +
T Consensus 12 ~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~--------------------~------------~------ 53 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVM--------------------A------------G------ 53 (380)
T ss_pred CCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCcccc--------------------c------------c------
Confidence 36899999999999999999999 6899999998643100 0 0
Q ss_pred cccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEeccee
Q 008184 97 RKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIR 176 (574)
Q Consensus 97 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi~ 176 (574)
...+++|||++|... ++.+.++|||+
T Consensus 54 ----------------------------------------------------~~~~~~~vG~~~~~~--~~~~~l~~Pi~ 79 (380)
T PTZ00466 54 ----------------------------------------------------AVEGNIFVGNKAEEY--RGLLKVTYPIN 79 (380)
T ss_pred ----------------------------------------------------CCCCCeEECchhhhh--CcCceeCcccc
Confidence 001457899999865 46789999999
Q ss_pred cCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHH-HHHHHHHhcCCCeEEEehhhH
Q 008184 177 RGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGL 255 (574)
Q Consensus 177 ~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~-~~eilFE~~~~~~v~~~~~sv 255 (574)
+|.|. |||++|.||+|+| ++|+++|+++ |||+++++++++..|+ |+|+|||+|++|+++++.+++
T Consensus 80 ~G~v~---------dwd~~e~iw~~~f-~~l~v~~~~~----pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~ 145 (380)
T PTZ00466 80 HGIIE---------NWNDMENIWIHVY-NSMKINSEEH----PVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAI 145 (380)
T ss_pred CCeEC---------CHHHHHHHHHHHH-hhcccCCccC----eEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchH
Confidence 99998 9999999999998 7899999998 8999999999988885 999999999999999999999
Q ss_pred HHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHH
Q 008184 256 AAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRI 335 (574)
Q Consensus 256 la~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~l 335 (574)
||+||+|++||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+.++. .+++..+.++++++
T Consensus 146 lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~~~~~~~v~~i 218 (380)
T PTZ00466 146 LSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGH-------LFNTSAEMEVVKNM 218 (380)
T ss_pred HHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCC-------CCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987652 34445678899999
Q ss_pred HHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-
Q 008184 336 KESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP- 414 (574)
Q Consensus 336 Ke~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~- 414 (574)
||++|||+.+.... ..... .+..... | .++|+..+.++
T Consensus 219 Ke~~c~v~~d~~~e---~~~~~--~~~~~~~----------------------------------y--~LPdg~~i~l~~ 257 (380)
T PTZ00466 219 KENCCYVSFNMNKE---KNSSE--KALTTLP----------------------------------Y--ILPDGSQILIGS 257 (380)
T ss_pred HHhCeEecCChHHH---Hhhcc--cccccee----------------------------------E--ECCCCcEEEEch
Confidence 99999998631100 00000 0000000 0 24455556565
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHH
Q 008184 415 RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVE 493 (574)
Q Consensus 415 er~~~~E~lF-~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~ 493 (574)
|||.++|.|| |+..| .+..||+++|.+||.+| |.|+|+.||+||||+||+|++|||.+||+
T Consensus 258 er~~~~E~LF~P~~~g-----------------~~~~gl~~~i~~sI~~c-~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~ 319 (380)
T PTZ00466 258 ERYRAPEVLFNPSILG-----------------LEYLGLSELIVTSITRA-DMDLRRTLYSHIVLSGGTTMFHGFGDRLL 319 (380)
T ss_pred HHhcCcccccCccccC-----------------CCCCCHHHHHHHHHHhC-ChhhHHHHhhcEEEeCCccccCCHHHHHH
Confidence 8999999999 55544 46779999999999999 99999999999999999999999999999
Q ss_pred HHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184 494 ERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 558 (574)
Q Consensus 494 ~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~ 558 (574)
+||..+.|... +|+|.. +.+|++++|+||||||++++|+++||||+||+|+|+++++||||
T Consensus 320 ~EL~~l~p~~~---~v~v~~-~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 320 NEIRKFAPKDI---TIRISA-PPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred HHHHHhCCCCc---eEEEec-CCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 99999998764 457765 45899999999999999999999999999999999999999986
No 5
>PTZ00281 actin; Provisional
Probab=100.00 E-value=2.3e-74 Score=611.26 Aligned_cols=367 Identities=19% Similarity=0.359 Sum_probs=309.0
Q ss_pred CCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhcccc
Q 008184 18 SNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS 96 (574)
Q Consensus 18 ~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (574)
..+||||+||+++|+|+|+|..| .++|++||+++..... . +
T Consensus 6 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~--------------------~------------~------ 47 (376)
T PTZ00281 6 VQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVM--------------------V------------G------ 47 (376)
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccc--------------------c------------C------
Confidence 45899999999999999999999 7999999987543100 0 0
Q ss_pred cccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEeccee
Q 008184 97 RKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIR 176 (574)
Q Consensus 97 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi~ 176 (574)
...+++++|++++.. +..+.+++||+
T Consensus 48 ----------------------------------------------------~~~~~~~~g~~~~~~--~~~~~l~~Pi~ 73 (376)
T PTZ00281 48 ----------------------------------------------------MGQKDSYVGDEAQSK--RGILTLKYPIE 73 (376)
T ss_pred ----------------------------------------------------cccCCeEECchhhcc--ccCcEEeccCc
Confidence 011457899998864 56899999999
Q ss_pred cCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHH-HHHHHHHhcCCCeEEEehhhH
Q 008184 177 RGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGL 255 (574)
Q Consensus 177 ~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~-~~eilFE~~~~~~v~~~~~sv 255 (574)
+|.|. |||++|.||+|+|.+.|+++|+++ |||||+++++++..|+ |+|+|||.|+||+++++.+++
T Consensus 74 ~G~i~---------dwd~~e~l~~~~f~~~l~v~p~~~----pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ 140 (376)
T PTZ00281 74 HGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 140 (376)
T ss_pred CCEEc---------CHHHHHHHHHHHHHhhccCCCccC----eEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHH
Confidence 99998 999999999999999999999999 8999999999888885 999999999999999999999
Q ss_pred HHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHH
Q 008184 256 AAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRI 335 (574)
Q Consensus 256 la~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~l 335 (574)
||+||+|++||||||+|++.|+|+||+||+++.+++.++++||++||++|.++|..++. ++.+..+.+++++|
T Consensus 141 ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~~~~~~~~~~i 213 (376)
T PTZ00281 141 LSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGY-------SFTTTAEREIVRDI 213 (376)
T ss_pred HHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCC-------CCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987652 34455678999999
Q ss_pred HHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-
Q 008184 336 KESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP- 414 (574)
Q Consensus 336 Ke~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~- 414 (574)
||++|||+.+-.. ....... .+.... .| .++|+..+.++
T Consensus 214 Ke~~c~v~~d~~~---~~~~~~~-~~~~~~----------------------------------~y--~LPdg~~i~i~~ 253 (376)
T PTZ00281 214 KEKLAYVALDFEA---EMQTAAS-SSALEK----------------------------------SY--ELPDGQVITIGN 253 (376)
T ss_pred HHhcEEecCCchH---HHHhhhc-Ccccce----------------------------------eE--ECCCCCEEEeeH
Confidence 9999999853100 0000000 000000 01 14455556564
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHH
Q 008184 415 RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVE 493 (574)
Q Consensus 415 er~~~~E~lF-~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~ 493 (574)
|||.++|.|| |...| .+..||+++|.+||.+| |.|+|+.||+||||+||+|+||||.+||+
T Consensus 254 er~~~~E~LF~P~~~~-----------------~~~~gi~~~i~~sI~~~-~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~ 315 (376)
T PTZ00281 254 ERFRCPEALFQPSFLG-----------------MESAGIHETTYNSIMKC-DVDIRKDLYGNVVLSGGTTMFPGIADRMN 315 (376)
T ss_pred HHeeCcccccChhhcC-----------------CCCCCHHHHHHHHHHhC-ChhHHHHHHhhccccCccccCcCHHHHHH
Confidence 7999999999 44443 35679999999999999 99999999999999999999999999999
Q ss_pred HHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184 494 ERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 558 (574)
Q Consensus 494 ~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~ 558 (574)
+||+.++|... +|+|+.. .+|++++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 316 ~El~~~~p~~~---~v~v~~~-~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 316 KELTALAPSTM---KIKIIAP-PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred HHHHHhCCCCc---ceEEecC-CCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 99999998764 4677753 5899999999999999999999999999999999999999995
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=5.9e-72 Score=593.56 Aligned_cols=369 Identities=21% Similarity=0.379 Sum_probs=307.8
Q ss_pred CCCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhccc
Q 008184 17 GSNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQN 95 (574)
Q Consensus 17 ~~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (574)
..++||||+||+++|+|+|++..| .++|++|++++..... + +
T Consensus 5 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~----------------------------~----~----- 47 (378)
T PTZ00004 5 ETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIM----------------------------V----G----- 47 (378)
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccc----------------------------c----C-----
Confidence 457899999999999999999999 7999999987643100 0 0
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEecce
Q 008184 96 SRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPI 175 (574)
Q Consensus 96 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi 175 (574)
...+++++|+++... ++.+.+++||
T Consensus 48 -----------------------------------------------------~~~~~~~~g~~~~~~--~~~~~l~~Pi 72 (378)
T PTZ00004 48 -----------------------------------------------------MEEKDCYVGDEAQDK--RGILTLKYPI 72 (378)
T ss_pred -----------------------------------------------------cCCCceEECchhhcc--cccceEcccC
Confidence 001357899998764 4568999999
Q ss_pred ecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHH-HHHHHHHHhcCCCeEEEehhh
Q 008184 176 RRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQEG 254 (574)
Q Consensus 176 ~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r-~~~eilFE~~~~~~v~~~~~s 254 (574)
++|.|. |||+++.||+|+|.++|++++.++ |||+++++++++..| +++|+|||.|+||+++++.++
T Consensus 73 ~~G~i~---------d~d~~e~i~~~~~~~~l~v~~~~~----pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~ 139 (378)
T PTZ00004 73 EHGIVT---------NWDDMEKIWHHTFYNELRVAPEEH----PVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQA 139 (378)
T ss_pred cCCEEc---------CHHHHHHHHHHHHHhhcccCCccC----cceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccH
Confidence 999998 999999999999989999999988 899999999988888 499999999999999999999
Q ss_pred HHHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHH
Q 008184 255 LAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNR 334 (574)
Q Consensus 255 vla~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~ 334 (574)
+||+||+|++||||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+.++. .+....+..++++
T Consensus 140 ~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~~~~~~~~~~ 212 (378)
T PTZ00004 140 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGT-------TFTTTAEKEIVRD 212 (378)
T ss_pred HHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCC-------CCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987652 3444567889999
Q ss_pred HHHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC
Q 008184 335 IKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP 414 (574)
Q Consensus 335 lKe~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~ 414 (574)
+||++|||+.+ ... ....... .+... . . .| .++|+..+.++
T Consensus 213 iKe~~c~v~~d-~~~--~~~~~~~-~~~~~-----~-----------------~-----------~y--~lPdg~~i~l~ 253 (378)
T PTZ00004 213 IKEKLCYIALD-FDE--EMGNSAG-SSDKY-----E-----------------E-----------SY--ELPDGTIITVG 253 (378)
T ss_pred HhhcceeecCC-HHH--HHhhhhc-Ccccc-----c-----------------e-----------EE--ECCCCCEEEEc
Confidence 99999999853 110 0000000 00000 0 0 00 24455555555
Q ss_pred -CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccc-cCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHH
Q 008184 415 -RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEE-KIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPA 491 (574)
Q Consensus 415 -er~~~~E~lF-~~~~g~~~~~~~~~~~~~~~~~~~-~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eR 491 (574)
+|+.++|.|| |...+ .+ ..||+++|.+||.+| |.|+|+.|++||||+||+|++|||.+|
T Consensus 254 ~er~~~~E~LF~P~~~~-----------------~~~~~gi~~~i~~sI~~~-~~d~r~~L~~nIvl~GG~s~~~Gf~~R 315 (378)
T PTZ00004 254 SERFRCPEALFQPSLIG-----------------KEEPPGIHELTFQSINKC-DIDIRKDLYGNIVLSGGTTMYRGLPER 315 (378)
T ss_pred HHHeeCcccccChhhcC-----------------ccccCChHHHHHHHHHhC-ChhHHHHHHhhEEeccchhcCcCHHHH
Confidence 7999999999 44443 23 679999999999999 999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184 492 VEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 558 (574)
Q Consensus 492 L~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~ 558 (574)
|++||+.++|... +++|.. +.+|++++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 316 L~~EL~~~~p~~~---~~~v~~-~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 316 LTKELTTLAPSTM---KIKVVA-PPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred HHHHHHHhCCCCc---cEEEec-CCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 9999999999765 456664 35899999999999999999999999999999999999999996
No 7
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=1.3e-71 Score=555.71 Aligned_cols=382 Identities=21% Similarity=0.362 Sum_probs=302.6
Q ss_pred CCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhcccc
Q 008184 18 SNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS 96 (574)
Q Consensus 18 ~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (574)
-..|||||||+..|||+|+++.| .++|++++..++-. ++.
T Consensus 11 v~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~------------------~d~--------------------- 51 (426)
T KOG0679|consen 11 VSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTD------------------GDA--------------------- 51 (426)
T ss_pred cceEEEeCCCceEeccccCCCCccccccceeeeeeccc------------------Ccc---------------------
Confidence 57899999999999999999999 79999999764320 000
Q ss_pred cccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEeccee
Q 008184 97 RKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIR 176 (574)
Q Consensus 97 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi~ 176 (574)
.+.+.+||+++|+..+ ++++.+..||+
T Consensus 52 ----------------------------------------------------~~~~~~y~~~~ai~~p-r~gmEv~~~i~ 78 (426)
T KOG0679|consen 52 ----------------------------------------------------EDKKGYYVDENAIHVP-RPGMEVKTPIK 78 (426)
T ss_pred ----------------------------------------------------ccccceEeechhccCC-CCCCeeccchh
Confidence 0124589999999987 67999999999
Q ss_pred cCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHH-HHHHHHHhcCCCeEEEehhhH
Q 008184 177 RGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGL 255 (574)
Q Consensus 177 ~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~-~~eilFE~~~~~~v~~~~~sv 255 (574)
+|++. |||.++.+|+|+|.++|.++|.+| |+|++|++||.+++|+ ++|+|||+|+||++|++.+++
T Consensus 79 nGlv~---------dWD~~~~~w~~~~~~~Lk~~p~eh----P~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v 145 (426)
T KOG0679|consen 79 NGLVE---------DWDLFEMQWRYAYKNQLKVNPEEH----PVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAV 145 (426)
T ss_pred cCCcc---------cHHHHHHHHHHHHhhhhhcCcccc----ceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHH
Confidence 99998 999999999999999999999999 8999999999999994 999999999999999999999
Q ss_pred HHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCC--CCCcc--------ccccc-
Q 008184 256 AAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQT--WPQIR--------TDILT- 324 (574)
Q Consensus 256 la~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~--~p~~~--------~~~l~- 324 (574)
|++||+|++||||||||++.|+|+||+||+++.+++++.++||+.|+..+.++|+..+. .|.|. .-...
T Consensus 146 ~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an 225 (426)
T KOG0679|consen 146 CTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPAN 225 (426)
T ss_pred HHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcch
Confidence 99999999999999999999999999999999999999999999999999999987632 22211 00000
Q ss_pred ---------------ccccHHHHHHHHHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCC
Q 008184 325 ---------------KAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDV 389 (574)
Q Consensus 325 ---------------~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~ 389 (574)
......++++.|+.+|.|++... +.....
T Consensus 226 ~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~---------------------------------de~~~~--- 269 (426)
T KOG0679|consen 226 AVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPF---------------------------------DEEVAA--- 269 (426)
T ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---------------------------------cccccc---
Confidence 00012344455555444432110 000000
Q ss_pred CCCCCCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChh
Q 008184 390 YPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRID 467 (574)
Q Consensus 390 ~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lF-~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d 467 (574)
..|+ ....++++....++ +||++||.|| |+....++..+.... ......|+++++..||..| |+|
T Consensus 270 -~i~~------~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~-----~~n~~lG~~~lv~sSi~~c-Dvd 336 (426)
T KOG0679|consen 270 -QIPT------KHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATS-----HINTMLGLPHLVYSSINMC-DVD 336 (426)
T ss_pred -cCCC------ccccCCCCcccccCcceeecchhhcCcchhccccccccCCC-----CCccccCchHHHHhhhccC-hHH
Confidence 0000 01235666777776 8999999999 544322211111100 0134679999999999999 999
Q ss_pred HHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcC--CCCCCceeeEeceeeecccCCcccceeeHHHH
Q 008184 468 LQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQ--SRTNPTYVSWKGGAVLGILDFGRDAWIHREDW 545 (574)
Q Consensus 468 ~r~~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~--~~~d~~~~aW~GgSIla~L~~f~~~wItr~eY 545 (574)
+|..||+||||+||+|+|+||.+||++||..+.|.. +++++. ...+|++++|+||||||+|++|++|||||+||
T Consensus 337 iR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s----rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEY 412 (426)
T KOG0679|consen 337 IRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS----RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEY 412 (426)
T ss_pred HHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc----eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHH
Confidence 999999999999999999999999999999999986 456665 34799999999999999999999999999999
Q ss_pred HhcCC-Cceeccc
Q 008184 546 IRNGI-HIGSGRK 557 (574)
Q Consensus 546 ee~G~-~i~~~k~ 557 (574)
||.|. +.+.|||
T Consensus 413 EE~G~d~~ve~rc 425 (426)
T KOG0679|consen 413 EEVGKDQLVERRC 425 (426)
T ss_pred HHhhhHHHHhhcC
Confidence 99999 7777776
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=6.7e-70 Score=584.71 Aligned_cols=377 Identities=23% Similarity=0.342 Sum_probs=301.8
Q ss_pred CCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhcccc
Q 008184 18 SNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS 96 (574)
Q Consensus 18 ~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (574)
.++||||+||+++|+|||++..| .++|++||+++..... .
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~---------------------------------~------ 44 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRR---------------------------------R------ 44 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEecccccc---------------------------------c------
Confidence 56899999999999999999999 6999999987543100 0
Q ss_pred cccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEeccee
Q 008184 97 RKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIR 176 (574)
Q Consensus 97 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi~ 176 (574)
.. .+ ....++++|++|+.. +..+.+++||+
T Consensus 45 --------~~---------~~-------------------------------~~~~~~~vG~ea~~~--~~~~~l~~Pi~ 74 (414)
T PTZ00280 45 --------SK---------KG-------------------------------FEDLDFYIGDEALAA--SKSYTLTYPMK 74 (414)
T ss_pred --------cc---------cc-------------------------------cccCCEEEcchhhhC--cCCcEEecCcc
Confidence 00 00 001457899999876 45799999999
Q ss_pred cCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHH-HHHHHHHhcCCCeEEEehhhH
Q 008184 177 RGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGL 255 (574)
Q Consensus 177 ~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~-~~eilFE~~~~~~v~~~~~sv 255 (574)
+|.|. |||++|.||+|+|++.|+++|.++ +||+++++++++..|+ |+|+|||.|++|+++++.+++
T Consensus 75 ~G~I~---------dwd~~e~l~~~~~~~~L~~~p~~~----~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~ 141 (414)
T PTZ00280 75 HGIVE---------DWDLMEKFWEQCIFKYLRCEPEEH----YFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAV 141 (414)
T ss_pred CCEeC---------CHHHHHHHHHHHHHHhhccCCCCC----ceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHH
Confidence 99998 999999999999999999999999 7999999999888774 999999999999999999999
Q ss_pred HHHhhc----------CCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccc
Q 008184 256 AAVFGN----------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTK 325 (574)
Q Consensus 256 la~ya~----------G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~ 325 (574)
||+||+ |++||||||+|++.|+|+||+||+++.+++.++++||++||++|.++|+.++. ++..
T Consensus 142 lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~ 214 (414)
T PTZ00280 142 LALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGE-------PIPA 214 (414)
T ss_pred HhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCC-------CCCc
Confidence 999999 99999999999999999999999999999999999999999999999987652 2333
Q ss_pred cccHHHHHHHHHhceeccCCccccccccccccCCCCCC-CceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCcccc
Q 008184 326 AMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDM 404 (574)
Q Consensus 326 ~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~y~~~~p~~-~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~ 404 (574)
..+.++++++||++||++.+-. .+...+.. .+.. ..++. .|.. .
T Consensus 215 ~~~~~~~~~iKe~~c~v~~d~~---~e~~~~~~-~~~~~~~~~~------~~d~-----------------------~-- 259 (414)
T PTZ00280 215 EDILLLAQRIKEKYCYVAPDIA---KEFEKYDS-DPKNHFKKYT------AVNS-----------------------V-- 259 (414)
T ss_pred HHHHHHHHHHHHhcCcccCcHH---HHHHHhhc-CcccccceEE------CCCC-----------------------C--
Confidence 4567899999999999986311 11111110 0100 00010 0000 0
Q ss_pred ccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCC
Q 008184 405 LEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGV 482 (574)
Q Consensus 405 ~~d~~~~~~~-er~~~~E~lF-~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~ 482 (574)
...+..+.++ +||.++|.|| |...+. ....||+++|.+||++| |+|+|+.||+||+|+||+
T Consensus 260 ~g~~~~i~l~~erf~~~E~LF~P~~~~~----------------~~~~gl~e~i~~sI~~~-~~d~r~~L~~nIvL~GG~ 322 (414)
T PTZ00280 260 TKKPYTVDVGYERFLGPEMFFHPEIFSS----------------EWTTPLPEVVDDAIQSC-PIDCRRPLYKNIVLSGGS 322 (414)
T ss_pred CCCccEEEechHHhcCcccccChhhcCC----------------ccCCCHHHHHHHHHHhC-ChhhHHHHhhcEEEeCCc
Confidence 0001123444 7999999999 444331 13459999999999999 999999999999999999
Q ss_pred CCcCChHHHHHHHHhhhCCCC--------------CCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhc
Q 008184 483 ALTGGLIPAVEERVLHAIPSN--------------EAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRN 548 (574)
Q Consensus 483 S~ipGf~eRL~~eL~~~~p~~--------------~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~ 548 (574)
|+||||.+||++||+.+++.. ..+ +|+|... .++++++|+||||||++++|+++||||+||+|+
T Consensus 323 s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~-~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~ 400 (414)
T PTZ00280 323 TMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPI-DVNVVSH-PRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEY 400 (414)
T ss_pred ccCcCHHHHHHHHHHHhccccccccccccccccCCCCc-eEEEecC-CccceeEEEChhhcccCcchhhheEEHHHHhcc
Confidence 999999999999999987531 112 5677754 478899999999999999999999999999999
Q ss_pred CCCceeccc
Q 008184 549 GIHIGSGRK 557 (574)
Q Consensus 549 G~~i~~~k~ 557 (574)
|+++++++-
T Consensus 401 G~~i~~~~~ 409 (414)
T PTZ00280 401 GPSICRYNN 409 (414)
T ss_pred ChHheeecc
Confidence 999998874
No 9
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=8.7e-71 Score=522.91 Aligned_cols=369 Identities=23% Similarity=0.429 Sum_probs=308.5
Q ss_pred CCCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhccc
Q 008184 17 GSNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQN 95 (574)
Q Consensus 17 ~~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (574)
..++||.|+|++++|+|+|++-.| .++|++|+||.-.. ++ + .
T Consensus 3 ~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~-------------------~e--------~---------~- 45 (389)
T KOG0677|consen 3 SRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRA-------------------EE--------K---------V- 45 (389)
T ss_pred CCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhh-------------------hh--------h---------c-
Confidence 378999999999999999999999 99999999985321 00 0 0
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEecce
Q 008184 96 SRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPI 175 (574)
Q Consensus 96 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi 175 (574)
.+ ...+++.|||||-.+ ++-+.+.|||
T Consensus 46 ---------g~------------------------------------------~~iKD~mvGdeasel--Rs~L~i~YPm 72 (389)
T KOG0677|consen 46 ---------GN------------------------------------------IEIKDLMVGDEASEL--RSLLDINYPM 72 (389)
T ss_pred ---------cC------------------------------------------eehhhheccchHHHH--HHHHhcCCcc
Confidence 00 012778999999877 5689999999
Q ss_pred ecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHH-HHHHHHHHhcCCCeEEEehhh
Q 008184 176 RRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQEG 254 (574)
Q Consensus 176 ~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r-~~~eilFE~~~~~~v~~~~~s 254 (574)
++|++. ||+||+++|+|+|.++|+|+|++. .+|+|+|++|+..+| +|+|+|||++||.++|++.++
T Consensus 73 eNGivr---------nwddM~h~WDytF~ekl~idp~~~----KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQA 139 (389)
T KOG0677|consen 73 ENGIVR---------NWDDMEHVWDYTFGEKLKIDPTNC----KILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQA 139 (389)
T ss_pred cccccc---------ChHHHHHHHHhhhhhhccCCCccC----eEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHH
Confidence 999998 999999999999999999999999 599999999999988 599999999999999999999
Q ss_pred HHHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHH
Q 008184 255 LAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNR 334 (574)
Q Consensus 255 vla~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~ 334 (574)
|+++||.|..||+|||+|.+.||||||+||+++++-..|++++|+|+|+||.+||..+| |.++.+.|++.+++
T Consensus 140 VLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rG-------YafN~tADFETVR~ 212 (389)
T KOG0677|consen 140 VLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRG-------YAFNHTADFETVRE 212 (389)
T ss_pred HHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhc-------cccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887 47889999999999
Q ss_pred HHHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC
Q 008184 335 IKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP 414 (574)
Q Consensus 335 lKe~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~ 414 (574)
+||++||++-+ ++. +..+...+ ..+.+ +| .++|+..+..+
T Consensus 213 iKEKLCYisYd-~e~-------e~kLalET--TvLv~----------------------------~Y--tLPDGRvIkvG 252 (389)
T KOG0677|consen 213 IKEKLCYISYD-LEL-------EQKLALET--TVLVE----------------------------SY--TLPDGRVIKVG 252 (389)
T ss_pred HHhhheeEeec-hhh-------hhHhhhhh--eeeee----------------------------ee--ecCCCcEEEec
Confidence 99999999842 110 00000000 00000 01 24566667665
Q ss_pred -CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHH
Q 008184 415 -RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAV 492 (574)
Q Consensus 415 -er~~~~E~lF-~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL 492 (574)
|||.+||.|| |.++. .+..|+.++++++|+.. ++|.|..||++|+|+||+++.||+..||
T Consensus 253 ~ERFeAPE~LFqP~Li~-----------------VE~~G~aellF~~iQaa-DiD~R~~lYkhIVLSGGstMYPGLPSRL 314 (389)
T KOG0677|consen 253 GERFEAPEALFQPHLIN-----------------VEGPGVAELLFNTIQAA-DIDIRSELYKHIVLSGGSTMYPGLPSRL 314 (389)
T ss_pred ceeccCchhhcCcceec-----------------cCCCcHHHHHHHHHHHh-ccchHHHHHhHeeecCCcccCCCCcHHH
Confidence 8999999999 55554 47889999999999998 9999999999999999999999999999
Q ss_pred HHHHhhhC-----CCC-CCcc--eEEEcCCCCCCceeeEeceeeeccc-CCcccceeeHHHHHhcCCCcee
Q 008184 493 EERVLHAI-----PSN-EAID--MVEVLQSRTNPTYVSWKGGAVLGIL-DFGRDAWIHREDWIRNGIHIGS 554 (574)
Q Consensus 493 ~~eL~~~~-----p~~-~~i~--~V~v~~~~~d~~~~aW~GgSIla~L-~~f~~~wItr~eYee~G~~i~~ 554 (574)
++||+++. ..+ .++. +|+|-. |..|.+.+++||++||.+ ..-.++|+||+||+|.|.+++.
T Consensus 315 EkElkqlyl~rVL~~d~~~l~KfkiRIEd-PPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~ 384 (389)
T KOG0677|consen 315 EKELKQLYLDRVLKGDTDKLKKFKIRIED-PPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLN 384 (389)
T ss_pred HHHHHHHHHHHHHcCChhhhhheEEeccC-CCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHH
Confidence 99998762 111 1111 456543 457899999999999997 6668999999999999998885
No 10
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.4e-68 Score=571.75 Aligned_cols=377 Identities=26% Similarity=0.437 Sum_probs=292.2
Q ss_pred CCCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhccc
Q 008184 17 GSNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQN 95 (574)
Q Consensus 17 ~~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (574)
..++||||+||+++|+|+|+|..| .++|+++++++...
T Consensus 3 ~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~----------------------------------------- 41 (393)
T PF00022_consen 3 ENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKN----------------------------------------- 41 (393)
T ss_dssp SSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSS-----------------------------------------
T ss_pred CCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccc-----------------------------------------
Confidence 468999999999999999999999 68999999875431
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEecce
Q 008184 96 SRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPI 175 (574)
Q Consensus 96 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi 175 (574)
...++++|++++. ....+.+++|+
T Consensus 42 ------------------------------------------------------~~~~~~~g~~~~~--~~~~~~~~~p~ 65 (393)
T PF00022_consen 42 ------------------------------------------------------SSNDYYVGDEALS--PRSNLELRSPI 65 (393)
T ss_dssp ------------------------------------------------------SSSSCEETHHHHH--TGTGEEEEESE
T ss_pred ------------------------------------------------------cceeEEeeccccc--chhheeeeeec
Confidence 0024678988665 25689999999
Q ss_pred ecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHH-HHHHHHHHhcCCCeEEEehhh
Q 008184 176 RRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQEG 254 (574)
Q Consensus 176 ~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r-~~~eilFE~~~~~~v~~~~~s 254 (574)
++|.++ ||++++.+|+|+|.+.|.+++.++ +||++++++.++..| +++|+|||+|+||++++++++
T Consensus 66 ~~g~i~---------~~~~~e~i~~~~~~~~l~~~~~~~----~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~ 132 (393)
T PF00022_consen 66 ENGVIV---------DWDALEEIWDYIFSNLLKVDPSDH----PVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSP 132 (393)
T ss_dssp ETTEES---------SHHHHHHHHHHHHHTTT-SSGGGS----EEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHH
T ss_pred cccccc---------cccccccccccccccccccccccc----eeeeeccccCCchhhhhhhhhhhcccccceeeeeecc
Confidence 999998 999999999999988899999888 899999988887777 599999999999999999999
Q ss_pred HHHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCC--CCCcc--------ccccc
Q 008184 255 LAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQT--WPQIR--------TDILT 324 (574)
Q Consensus 255 vla~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~--~p~~~--------~~~l~ 324 (574)
+||+||+|.+||||||+|++.|+|+||+||+++.++++++++||++||++|.++|+.++. .|.+. ...+.
T Consensus 133 ~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (393)
T PF00022_consen 133 LLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYN 212 (393)
T ss_dssp HHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHS
T ss_pred cccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhcccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999987521 11110 11233
Q ss_pred ccccHHHHHHHHHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCcccc
Q 008184 325 KAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDM 404 (574)
Q Consensus 325 ~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~ 404 (574)
...+..+++++|+++|+|+.......... ....+ ...+ .
T Consensus 213 ~~~~~~~~~~ik~~~~~v~~~~~~~~~~~---~~~~~--~~~~------------------------------------~ 251 (393)
T PF00022_consen 213 NSDDEEIVEEIKEECCYVSEDPDEEQEEQ---ASENP--EKSY------------------------------------E 251 (393)
T ss_dssp SHHHHHHHHHHHHHHHSGGSSHHHHHHHH---HCSTT--TEEE------------------------------------E
T ss_pred chhhhccchhccchhhhcccccccccccc---ccccc--ceec------------------------------------c
Confidence 34567899999999999997532100000 00000 0000 1
Q ss_pred ccCCccccCC-CCCCCCCCCCC-CCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCC
Q 008184 405 LEDTWHTDFP-RRSDISDNFYP-GINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGV 482 (574)
Q Consensus 405 ~~d~~~~~~~-er~~~~E~lF~-~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~ 482 (574)
++|+..+.++ +|+.++|.||. ...+.... ....+..||+++|.+||.+| +.|+|+.|++||+|+||+
T Consensus 252 lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~----------~~~~~~~gL~~~I~~si~~~-~~d~r~~l~~nIvl~GG~ 320 (393)
T PF00022_consen 252 LPDGQTIILGKERFRIPEILFNPSLIGIDSA----------SEPSEFMGLPELILDSISKC-PIDLRKELLSNIVLTGGS 320 (393)
T ss_dssp -TTSSEEEESTHHHHHHHTTTSGGGGTSSST----------S---SSSCHHHHHHHHHHTS-TTTTHHHHHTTEEEESGG
T ss_pred ccccccccccccccccccccccccccccccc----------ccccccchhhhhhhhhhhcc-ccccccccccceEEeccc
Confidence 2233333333 58888999994 33321000 00023469999999999999 999999999999999999
Q ss_pred CCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184 483 ALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 558 (574)
Q Consensus 483 S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~ 558 (574)
|+||||.+||++||..+.|... +++|+..+.+|.+++|+||||||++++|+++||||+||+|+|+++++|||+
T Consensus 321 S~i~G~~eRL~~eL~~~~~~~~---~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 321 SLIPGFKERLQQELRSLLPSST---KVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp GGSTTHHHHHHHHHHHHSGTTS---TEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred ccccchHHHHHHHhhhhhhccc---cceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 9999999999999999988766 456665333899999999999999999999999999999999999999995
No 11
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.6e-65 Score=544.47 Aligned_cols=367 Identities=23% Similarity=0.406 Sum_probs=301.1
Q ss_pred CeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhccccc
Q 008184 19 NLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSR 97 (574)
Q Consensus 19 ~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (574)
.+||||+||+++|+|+|++..| .++|+|||+++..... .
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~-------------------------------------~--- 41 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGM-------------------------------------V--- 41 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccc-------------------------------------c---
Confidence 6899999999999999999999 7999999987532100 0
Q ss_pred ccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEecceec
Q 008184 98 KDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRR 177 (574)
Q Consensus 98 ~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi~~ 177 (574)
. ..+.+++|++|... .+.+.+++||++
T Consensus 42 -------------------~--------------------------------~~~~~~~G~~a~~~--~~~~~~~~P~~~ 68 (373)
T smart00268 42 -------------------G--------------------------------DAKDTFVGDEAQEK--RGGLELKYPIEH 68 (373)
T ss_pred -------------------C--------------------------------CCcceEecchhhhc--CCCceecCCCcC
Confidence 0 01457899999665 345699999999
Q ss_pred CeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHH-HHHHHHHHhcCCCeEEEehhhHH
Q 008184 178 GHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQEGLA 256 (574)
Q Consensus 178 G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r-~~~eilFE~~~~~~v~~~~~svl 256 (574)
|.+. ||++++.+|+|+|.+.|++++.++ +|+++++.+.+...| ++++++||.|+|++++++.+++|
T Consensus 69 G~i~---------d~~~~e~i~~~~~~~~l~~~~~~~----~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~ 135 (373)
T smart00268 69 GIVE---------NWDDMEKIWDYTFFNELRVEPEEH----PVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVL 135 (373)
T ss_pred CEEe---------CHHHHHHHHHHHHhhhcCCCCccC----eeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHH
Confidence 9998 999999999999988999998888 799999988866666 59999999999999999999999
Q ss_pred HHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHH
Q 008184 257 AVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIK 336 (574)
Q Consensus 257 a~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lK 336 (574)
|+||+|.++|||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+..+. .++...+.++++++|
T Consensus 136 a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~-------~~~~~~~~~~~~~iK 208 (373)
T smart00268 136 SLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGY-------QFNSSAEFEIVREIK 208 (373)
T ss_pred HHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCC-------CCCcHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999977431 223345678999999
Q ss_pred HhceeccCCccccccccccccCC-CCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-
Q 008184 337 ESYCEIKEGEIDAVAVVHSYEDG-MPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP- 414 (574)
Q Consensus 337 e~~c~v~~~~~~~~~~~~~y~~~-~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~- 414 (574)
|++|+++.+.... ....... .+... . .. | .++|+..+.++
T Consensus 209 e~~~~v~~~~~~~---~~~~~~~~~~~~~-----~-----------------~~-----------~--~lpdg~~~~~~~ 250 (373)
T smart00268 209 EKLCYVAEDFEKE---MKKARESSESSKL-----E-----------------KT-----------Y--ELPDGNTIKVGN 250 (373)
T ss_pred hheeeecCChHHH---HHHhhhccccccc-----c-----------------ee-----------E--ECCCCCEEEECh
Confidence 9999998631100 0000000 00000 0 00 0 13344444444
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHH
Q 008184 415 RRSDISDNFYP-GINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVE 493 (574)
Q Consensus 415 er~~~~E~lF~-~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~ 493 (574)
+|+.++|.||. ...+ .+..||+++|.++|.+| |.|+|+.|++||+|+||+|++|||.+||+
T Consensus 251 er~~~~E~lf~p~~~~-----------------~~~~~i~~~i~~~i~~~-~~d~r~~l~~nIvltGG~s~i~Gl~~RL~ 312 (373)
T smart00268 251 ERFRIPEILFKPELIG-----------------LEQKGIHELVYESIQKC-DIDVRKDLYENIVLSGGSTLIPGFGERLE 312 (373)
T ss_pred HHeeCchhcCCchhcC-----------------CCcCCHHHHHHHHHHhC-CHhHHHHHHhCeEeecccccCcCHHHHHH
Confidence 79999999994 3333 35679999999999999 99999999999999999999999999999
Q ss_pred HHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184 494 ERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 558 (574)
Q Consensus 494 ~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~ 558 (574)
+||..++|... +|++.. +.+|.+++|+||||+|++++|+++||||+||+|+|.++++||||
T Consensus 313 ~el~~~~p~~~---~v~v~~-~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 313 KELKQLAPKKL---KVKVIA-PPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred HHHHHhCCCCc---eeEEec-CCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 99999998654 456664 35789999999999999999999999999999999999999996
No 12
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=2e-64 Score=492.68 Aligned_cols=373 Identities=21% Similarity=0.335 Sum_probs=310.0
Q ss_pred CCCeEEEcCCCceeeeecCCCCCCCccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhcccc
Q 008184 17 GSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS 96 (574)
Q Consensus 17 ~~~~iVi~~GS~~lkiG~a~d~~P~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (574)
..+|||+|||++++|||+|+...|..||||++|.|..+
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~~vpNcl~kaK~~~------------------------------------------ 39 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPFVVPNCLAKAKFGR------------------------------------------ 39 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCceeccchhhhccccc------------------------------------------
Confidence 46899999999999999999999999999999876531
Q ss_pred cccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEeccee
Q 008184 97 RKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIR 176 (574)
Q Consensus 97 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi~ 176 (574)
++.|+|++...|.+...+..+.|++
T Consensus 40 -------------------------------------------------------rr~f~~nei~ec~D~ssL~y~rp~e 64 (400)
T KOG0680|consen 40 -------------------------------------------------------RRSFLANEIDECKDISSLFYRRPHE 64 (400)
T ss_pred -------------------------------------------------------chhhhhhhhhhccCccceEEeehhh
Confidence 2347888888888778899999999
Q ss_pred cCeeeecCCCChhhcHHHHHHHHHHHHhh-hcCCCCCCCcccceeeecCCCCChHHHHH-HHHHHHHhcCCCeEEEehhh
Q 008184 177 RGHLNISQHYPMQQVLEDLYAIWDWILTE-KLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEG 254 (574)
Q Consensus 177 ~G~i~~~~~~s~~~~~dd~e~iw~~~~~~-~L~i~~~~~~~~~~VLv~e~~~~~~~~r~-~~eilFE~~~~~~v~~~~~s 254 (574)
+|.+. +|+-...+|+|+|.+ .++++.+++ .+++|++.++-..+.+ +.|++||+|+|.+++-...+
T Consensus 65 rGyLv---------nW~tq~~vWDy~f~~~~~~~~~~~~----~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa 131 (400)
T KOG0680|consen 65 RGYLV---------NWDTQSQVWDYCFGNPGFDVEGKDH----NIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAA 131 (400)
T ss_pred cceeE---------eehhHHHHHHHHhcCCCcCcccCcc----eEEEecccccccchhhhHHHHHHHHhccceEeecCHH
Confidence 99999 999999999999963 345666777 6899999999888886 99999999999999999999
Q ss_pred HHHHhhc---CC--------ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccc
Q 008184 255 LAAVFGN---GL--------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDIL 323 (574)
Q Consensus 255 vla~ya~---G~--------~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l 323 (574)
.+++|-. +. .+++|||+|++.|+|+||.+|.+...+++|+++||+.||++|++.++.++ +
T Consensus 132 ~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~---------l 202 (400)
T KOG0680|consen 132 VLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRH---------L 202 (400)
T ss_pred HhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhh---------h
Confidence 9998762 21 26999999999999999999999999999999999999999999998874 5
Q ss_pred cccccHHHHHHHHHhceeccCC---ccccc-------cccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCC
Q 008184 324 TKAMDLLMLNRIKESYCEIKEG---EIDAV-------AVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPP 393 (574)
Q Consensus 324 ~~~~d~~l~e~lKe~~c~v~~~---~~~~~-------~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p 393 (574)
+.+.+..+++++||.+|||+++ +++.. .....|. +||-+.. +.+++-+ +...
T Consensus 203 NvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~~~~i~Yv--LPDF~T~---k~Gyvr~-----------~~vk-- 264 (400)
T KOG0680|consen 203 NVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQENKVMIDYV--LPDFSTS---KRGYVRN-----------EDVK-- 264 (400)
T ss_pred cccchhhhhhhhhhheEEechhhHHHHHHHhhccccceeEEEEe--cCCcccc---cceeEec-----------CCCC--
Confidence 6678889999999999999973 23221 0111232 4432210 1111111 1101
Q ss_pred CCCCCCCccccccCCccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHH
Q 008184 394 PRSWFNDYEDMLEDTWHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRK 471 (574)
Q Consensus 394 ~~~~~~d~~d~~~d~~~~~~~-er~~~~E~lF-~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~ 471 (574)
...|.+.+.+. |||.+||+|| |+.++ ..++||+|||.+||..| |.++|+.
T Consensus 265 ----------~~~d~qii~L~nErF~IPEilF~Psdi~-----------------I~q~GIpEAV~esl~~~-Pe~~~p~ 316 (400)
T KOG0680|consen 265 ----------LPEDEQIITLTNERFTIPEILFSPSDIG-----------------IQQPGIPEAVLESLSML-PEEVRPL 316 (400)
T ss_pred ----------CCCCcceeeecccccccchhhcChhhcC-----------------cccCCchHHHHHHHHhC-HHHHHHH
Confidence 11234556664 9999999999 66665 67899999999999999 9999999
Q ss_pred HhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCC
Q 008184 472 LFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIH 551 (574)
Q Consensus 472 L~~NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~ 551 (574)
|+.|||++||++++|||.+||..||++++|.++ .|+|.. |.||..-+|.||+-++.+++|..+||||+||+|+|.+
T Consensus 317 l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~---~v~V~~-p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~ 392 (400)
T KOG0680|consen 317 LLENIVCIGGNSNFPGFRQRLARELRSLLPADW---EVSVSV-PEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPS 392 (400)
T ss_pred HHhcEEEecCccCCcchHHHHHHHHHhhCCccc---eEEEec-CCCcceeeehhccccccCcchhcceecHhhHhhcCch
Confidence 999999999999999999999999999999987 456664 4799999999999999999999999999999999999
Q ss_pred ceecccc
Q 008184 552 IGSGRKY 558 (574)
Q Consensus 552 i~~~k~~ 558 (574)
++.+|++
T Consensus 393 ~~~~~~~ 399 (400)
T KOG0680|consen 393 WCTKKRF 399 (400)
T ss_pred hhhhhcc
Confidence 9998875
No 13
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.3e-63 Score=529.59 Aligned_cols=367 Identities=25% Similarity=0.408 Sum_probs=300.1
Q ss_pred eEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhcccccc
Q 008184 20 LVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRK 98 (574)
Q Consensus 20 ~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (574)
+||||+||+++|+|+|++..| .++|||||+++.... .
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~--------------------------------------~---- 38 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSV--------------------------------------M---- 38 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCccc--------------------------------------c----
Confidence 589999999999999999988 899999998754310 0
Q ss_pred cccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEecceecC
Q 008184 99 DVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRG 178 (574)
Q Consensus 99 ~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi~~G 178 (574)
.. ...+.++||++|...... ++.+++|+++|
T Consensus 39 -----------------~~-------------------------------~~~~~~~~G~~a~~~~~~-~~~~~~P~~~G 69 (371)
T cd00012 39 -----------------VG-------------------------------AGDKDYFVGEEALEKRGL-GLELIYPIEHG 69 (371)
T ss_pred -----------------cc-------------------------------cCCCceEEchhhhhCCCC-ceEEcccccCC
Confidence 00 012467899999887543 79999999999
Q ss_pred eeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHH-HHHHHHHHhcCCCeEEEehhhHHH
Q 008184 179 HLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQEGLAA 257 (574)
Q Consensus 179 ~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r-~~~eilFE~~~~~~v~~~~~svla 257 (574)
.+. ||++++.+|+|+|.+.|.++++++ +|+++++.+.++..| +++++|||.+++++++++.+++||
T Consensus 70 ~i~---------d~~~~e~~~~~~~~~~l~~~~~~~----~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a 136 (371)
T cd00012 70 IVV---------DWDDMEKIWDHLFFNELKVNPEEH----PVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLS 136 (371)
T ss_pred EEe---------CHHHHHHHHHHHHHHhcCCCCCCC----ceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHH
Confidence 998 999999999999988898888777 788888888776666 599999999999999999999999
Q ss_pred HhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHH
Q 008184 258 VFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKE 337 (574)
Q Consensus 258 ~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe 337 (574)
+||+|.++|||||+|++.|+|+||+||+++.+++.++++||+++|++|.++|+.++. .+....+..+++++||
T Consensus 137 ~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~-------~~~~~~~~~~~~~iKe 209 (371)
T cd00012 137 LYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGY-------ELNSSDEREIVRDIKE 209 (371)
T ss_pred HHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCC-------CccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987642 2344567889999999
Q ss_pred hceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CC
Q 008184 338 SYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RR 416 (574)
Q Consensus 338 ~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~-er 416 (574)
++|+|+.+...... .... ...... . . -.++|+..+.++ +|
T Consensus 210 ~~~~v~~~~~~~~~---~~~~-~~~~~~-~---------------------~-------------~~lpd~~~i~~~~er 250 (371)
T cd00012 210 KLCYVALDIEEEQD---KSAK-ETSLLE-K---------------------T-------------YELPDGRTIKVGNER 250 (371)
T ss_pred hheeecCCHHHHHH---hhhc-cCCccc-e---------------------e-------------EECCCCeEEEEChHH
Confidence 99999864211000 0000 000000 0 0 013344444444 79
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHHHH
Q 008184 417 SDISDNFYP-GINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEER 495 (574)
Q Consensus 417 ~~~~E~lF~-~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~~e 495 (574)
+.++|.||. ...+ ....+|+++|.++|+.| +.|.|+.+++||+|+||+|++|||.+||++|
T Consensus 251 ~~~~E~lF~p~~~~-----------------~~~~~i~~~i~~~i~~~-~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~e 312 (371)
T cd00012 251 FRAPEILFNPSLIG-----------------SEQVGISEAIYSSINKC-DIDLRKDLYSNIVLSGGSTLFPGFGERLQKE 312 (371)
T ss_pred hhChHhcCChhhcC-----------------CCcCCHHHHHHHHHHhC-CHhHHHHHHhCEEEeCCccCCcCHHHHHHHH
Confidence 999999994 4333 35679999999999999 9999999999999999999999999999999
Q ss_pred HhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecc
Q 008184 496 VLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGR 556 (574)
Q Consensus 496 L~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k 556 (574)
|..+.|.. +...+.+.. ..+|.+++|+|||++|++++|+++||||+||+|+|+++++||
T Consensus 313 l~~~~~~~-~~~~~~~~~-~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 313 LLKLAPPS-KDTKVKVIA-PPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred HHHhCCcc-cceEEEEcc-CCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 99999863 112455553 468999999999999999999999999999999999999876
No 14
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=9.2e-64 Score=532.08 Aligned_cols=360 Identities=22% Similarity=0.350 Sum_probs=281.2
Q ss_pred CceEEccccccCCCCCCceEecceecCeeeecCCCChhhcHHHHHHHHHHHHhh--hcCCCCCCCcccceeeecCCCCCh
Q 008184 152 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTE--KLHIPRSERNLYSAILVLPESFDN 229 (574)
Q Consensus 152 ~~~~vG~eal~~~~~~~~~l~~Pi~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~--~L~i~~~~~~~~~~VLv~e~~~~~ 229 (574)
++.++|+++....+.+.+++++|+++|.+. ||++++.+|+|+|.+ .+...+.++ |+++||+++++
T Consensus 52 ~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~---------~W~~~e~~w~~~~~~~~~~~~~~~~~----pllltep~~n~ 118 (444)
T COG5277 52 KDTYVGNEAQNDRDNSLLELRYPIENGIIL---------NWDAMEQIWDYTFFNKGDLLPSPEEH----PLLLTEPPLNP 118 (444)
T ss_pred cccccCchhhhccCCccceeecccccCccC---------CcHHHHHHHHHhhcchhhccCCCcCC----ceEEeccCCCc
Confidence 456899999887655689999999999999 999999999999997 688888999 89999999999
Q ss_pred HHHHH-HHHHHHHhcCCCeEEEehhhHHHHhhcCCc--eEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHH
Q 008184 230 REIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 306 (574)
Q Consensus 230 ~~~r~-~~eilFE~~~~~~v~~~~~svla~ya~G~~--tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~ 306 (574)
.+.|+ +++++||+|+||+++++.+++|++|+.|.+ +|||||+|++.|+|+||+||++++++++|+++||+++|.+|.
T Consensus 119 ~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~ 198 (444)
T COG5277 119 PSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLK 198 (444)
T ss_pred HHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHH
Confidence 99885 999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccccccc---ccHHHHHHHHHhce-------eccCCccccccccccccCCCCCCCceeEeeeecCCC
Q 008184 307 WTQRHHQTWPQIRTDILTKA---MDLLMLNRIKESYC-------EIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPP 376 (574)
Q Consensus 307 ~lL~~~~~~p~~~~~~l~~~---~d~~l~e~lKe~~c-------~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap 376 (574)
++|..... +.+.+.+... .++++++.+|+++| |+..+ .....+... +.+. .+. .
T Consensus 199 ~lL~~~~~--~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~---~~~~~~e~~-~~~~--~~~--------~ 262 (444)
T COG5277 199 KLLREKYP--PSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLD---AEEEFEEEE-EKPA--EKS--------T 262 (444)
T ss_pred HHHhhccc--ccCCcccccccccccHHHHHHHHHhhccccccccchhhc---chHHHHHHh-hhhh--hhc--------c
Confidence 99987532 2344556555 77999999999999 54431 000000000 0010 000 0
Q ss_pred CcCCCC---cccCCCCCCCCCCCCCCCccccccCCccccCC-C-CCCCCCCCCCCC--CCCCCCCC-----------CCC
Q 008184 377 MGLFYP---KLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-R-RSDISDNFYPGI--NVGLPMWE-----------SYP 438 (574)
Q Consensus 377 ~~lf~p---~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~-e-r~~~~E~lF~~~--~g~~~~~~-----------~~~ 438 (574)
..-|.+ .....+. ..++++..+.+. + ||.+||.+|.+. ..++.... ...
T Consensus 263 ~~~~~~~~~~~~~~~~-------------~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~ 329 (444)
T COG5277 263 ESTFQLSKETSIAKES-------------KELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENY 329 (444)
T ss_pred cccccccchhcccccc-------------ccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhcc
Confidence 000000 0000111 123455556554 6 999999999433 22111100 000
Q ss_pred ccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCC
Q 008184 439 VLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNP 518 (574)
Q Consensus 439 ~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~ 518 (574)
...+........||+++|.++|+.| +.|.|+.|++||||+||+|++|||.+||++||..+.|... .|.|.+. .+|
T Consensus 330 ~~~~~~~~~~~~gl~e~v~~si~~~-~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~---~v~v~~~-~~~ 404 (444)
T COG5277 330 EISPTNLGNDIAGLPELVYQSIQIC-DEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIW---KVSVIPP-PDP 404 (444)
T ss_pred ccccccccccccchHHHHHHHHHhc-cHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCC---ceeeecC-Cch
Confidence 1111122245678999999999999 9999999999999999999999999999999999998754 5677764 599
Q ss_pred ceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184 519 TYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 558 (574)
Q Consensus 519 ~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~ 558 (574)
++.+|+||||||++++|+++||||+||+|+|+++++++|+
T Consensus 405 ~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 405 SLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred hhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 9999999999999999999999999999999999998874
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=2e-50 Score=395.02 Aligned_cols=381 Identities=22% Similarity=0.320 Sum_probs=293.2
Q ss_pred CCCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhccc
Q 008184 17 GSNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQN 95 (574)
Q Consensus 17 ~~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (574)
++..+|||+|.++-|.|+|+...| .++|.|||.+.+.... .
T Consensus 3 ~~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s-------------------------------------~- 44 (415)
T KOG0678|consen 3 GNLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVS-------------------------------------S- 44 (415)
T ss_pred CCCceeeccCcceeeeeccccCCcccccceeEEeccccccc-------------------------------------c-
Confidence 345599999999999999999999 8999999987332100 0
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEecce
Q 008184 96 SRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPI 175 (574)
Q Consensus 96 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~Pi 175 (574)
+ ..++ + +|. ...-++|+|+||+. .+.|.|.|||
T Consensus 45 -~----~~~~-~-~~~-------------------------------------~~dldf~ig~eal~---~~~ysl~ypi 77 (415)
T KOG0678|consen 45 -K----ATRR-V-KRG-------------------------------------TEDLDFFIGDEALD---ATTYSLKYPI 77 (415)
T ss_pred -c----hhhh-h-hcc-------------------------------------ccccceecccHHHh---hcccccccce
Confidence 0 0000 0 000 01257899999998 4599999999
Q ss_pred ecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHH-HHHHHHHhcCCCeEEEehhh
Q 008184 176 RRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEG 254 (574)
Q Consensus 176 ~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~-~~eilFE~~~~~~v~~~~~s 254 (574)
+||.+. +||.||++|+..+.++|..+|++| -.|+++++.++.+.|+ +.|++||.|++|.+|++.++
T Consensus 78 Rhg~ve---------~wd~mer~~~q~ifkylr~ePedh----~fLlteppln~penreytaeImfEsfnvpglyiAVqa 144 (415)
T KOG0678|consen 78 RHGQVE---------DWDLMERFWEQCIFKYLRAEPEDH----YFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQA 144 (415)
T ss_pred eccccc---------cHHHHHHHHhhhhhhhhcCCcccc----eEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHH
Confidence 999998 999999999999999999999999 6899999999999997 99999999999999999999
Q ss_pred HHHHhhc------C--CceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCccccccccc
Q 008184 255 LAAVFGN------G--LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKA 326 (574)
Q Consensus 255 vla~ya~------G--~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~ 326 (574)
++|+-++ | .-||+|||.|.+.|||.||.||||+..++..++++|+|+|-+++++|++++..++ ..
T Consensus 145 vLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP-------~e 217 (415)
T KOG0678|consen 145 VLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIP-------PE 217 (415)
T ss_pred HHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCC-------hH
Confidence 9998654 1 3589999999999999999999999999999999999999999999988865332 23
Q ss_pred ccHHHHHHHHHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCcccccc
Q 008184 327 MDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLE 406 (574)
Q Consensus 327 ~d~~l~e~lKe~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~ 406 (574)
..++.++.+||++||+.++= ..++..|..+ |.+-.++ ....++ +...
T Consensus 218 ~sl~tak~iKe~ycy~cPdi---vkef~k~d~e-p~K~ikq-~~~~~~----------i~~~------------------ 264 (415)
T KOG0678|consen 218 QSLETAKAIKEKYCYTCPDI---VKEFAKYDRE-PAKWIKQ-YTGINV----------ITGK------------------ 264 (415)
T ss_pred HhhhhhHHHHhhhcccCcHH---HHHHHHhccC-HHHHHHH-Hhccch----------hcCC------------------
Confidence 45688999999999998742 1223333321 2111000 000000 0000
Q ss_pred CCccccCC-CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCc
Q 008184 407 DTWHTDFP-RRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALT 485 (574)
Q Consensus 407 d~~~~~~~-er~~~~E~lF~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~i 485 (574)
...++.+ +||-.+|++|.+.... ..-..+|++.|...|+.| ++|.|+-||+||++.||.+++
T Consensus 265 -~~~vDvgyerFlgpEiff~Pe~a~---------------~d~~~~~~~~vd~~Iq~~-pIdvrr~ly~nivlsggst~f 327 (415)
T KOG0678|consen 265 -KFVVDVGYERFLGPEIFFHPEFAN---------------PDFLTPLSEVVDWVIQHC-PIDVRRPLYKNIVLSGGSTMF 327 (415)
T ss_pred -ceeecccHHhhcChhhhcCccccC---------------CccCcchHHHhhhhhhhC-CcccchhhhhHHhhccchHHH
Confidence 0112223 5788888888432210 013457999999999999 999999999999999999999
Q ss_pred CChHHHHHHHHhhhCCCC------------CCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCCce
Q 008184 486 GGLIPAVEERVLHAIPSN------------EAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIG 553 (574)
Q Consensus 486 pGf~eRL~~eL~~~~p~~------------~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~ 553 (574)
.+|..||++++..++... .++ .|+++.. .-.++++|.|||+|++.+.|-..+-||+||+|+|++|+
T Consensus 328 k~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~v-dvqvish-~~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~ 405 (415)
T KOG0678|consen 328 KDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPV-DVQVLSH-LLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSIC 405 (415)
T ss_pred HHhhhhccHHHHHHHHHHHHHhcccccCCCCCc-eeehhhh-hhhhcceeccCccccCCcccccccCcchhhhhhChhhh
Confidence 999999999997653210 112 4666653 34579999999999999999999999999999999999
Q ss_pred e
Q 008184 554 S 554 (574)
Q Consensus 554 ~ 554 (574)
.
T Consensus 406 r 406 (415)
T KOG0678|consen 406 R 406 (415)
T ss_pred h
Confidence 4
No 16
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=4.2e-45 Score=377.77 Aligned_cols=407 Identities=21% Similarity=0.303 Sum_probs=295.2
Q ss_pred cCCCeEEEcCCCceeeeecCCCCCC-CccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhcc
Q 008184 16 RGSNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQ 94 (574)
Q Consensus 16 ~~~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (574)
.++.+|||||||+.+|+|+|+...| ++|+|++.|++..... +
T Consensus 21 ~n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~-----------------~-------------------- 63 (645)
T KOG0681|consen 21 SNTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLG-----------------A-------------------- 63 (645)
T ss_pred cCCCcEEEeCCceeEeecccCCCCccchhhhhhccccccccc-----------------c--------------------
Confidence 3588999999999999999999999 9999999998743100 0
Q ss_pred cccccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCCCCCCceEecc
Q 008184 95 NSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRP 174 (574)
Q Consensus 95 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~~~~~~~l~~P 174 (574)
.-.+||++.+... ......+.|
T Consensus 64 ---------------------------------------------------------s~t~vgnd~~~~~-~~Rs~~rSP 85 (645)
T KOG0681|consen 64 ---------------------------------------------------------SVTLVGNDILNFQ-GVRSSPRSP 85 (645)
T ss_pred ---------------------------------------------------------ccccccchhhhhh-hhhccCCCC
Confidence 0013555444321 124567889
Q ss_pred eecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHH-HHHHHHHHhcCCCeEEEehh
Q 008184 175 IRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIK-EMLSIVLRDLRFASAVVHQE 253 (574)
Q Consensus 175 i~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r-~~~eilFE~~~~~~v~~~~~ 253 (574)
|.+.+|. ||+.+|.|++|+| .+|++++.+ .-+|+++||..+++.+.| +|.|+|||.+|||+|.+...
T Consensus 86 Fd~nVvt---------Nwel~E~ilDY~F-~~LG~~~~~--idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGID 153 (645)
T KOG0681|consen 86 FDRNVVT---------NWELMEQILDYIF-GKLGVDGQG--IDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGID 153 (645)
T ss_pred CcCCccc---------cHHHHHHHHHHHH-HhcCCCccC--CCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechh
Confidence 9999998 9999999999999 799999854 233899999999999998 59999999999999999999
Q ss_pred hHHHHhh-cCC---ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccH
Q 008184 254 GLAAVFG-NGL---STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDL 329 (574)
Q Consensus 254 svla~ya-~G~---~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~ 329 (574)
++.|+|. .+. -+|+||++|++.|+|.||.||..+-..+.|+++||..++.||.+||+.+. |. +.+..++
T Consensus 154 slfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Ky--p~-----~~~~~t~ 226 (645)
T KOG0681|consen 154 SLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKY--PF-----HLNAFTG 226 (645)
T ss_pred hHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccC--cc-----chhhcCH
Confidence 9999993 333 36999999999999999999999999999999999999999999998763 21 2235678
Q ss_pred HHHHHHHHhceeccCC---ccccccccc-----------ccc---CC----CCCCC-ceeE------ee------ee---
Q 008184 330 LMLNRIKESYCEIKEG---EIDAVAVVH-----------SYE---DG----MPPGS-HKTR------LI------AL--- 372 (574)
Q Consensus 330 ~l~e~lKe~~c~v~~~---~~~~~~~~~-----------~y~---~~----~p~~~-~k~~------~~------~~--- 372 (574)
.-++.++..+||++++ ++....... .|. .+ ++... .+.+ ++ +.
T Consensus 227 sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~ 306 (645)
T KOG0681|consen 227 SKAERLLHEHCYISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENR 306 (645)
T ss_pred HHHHHHhhhhceeCcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 8999999999999974 111100000 000 00 00000 0000 00 00
Q ss_pred ----------------cCCCCc-------CCCCcccCC----------------------------CCC---CCCCC---
Q 008184 373 ----------------NVPPMG-------LFYPKLLVP----------------------------DVY---PPPPR--- 395 (574)
Q Consensus 373 ----------------~~ap~~-------lf~p~~~~~----------------------------e~~---~~p~~--- 395 (574)
...-.+ +.-|..+.. |.. ..+.+
T Consensus 307 redeqql~~~~kaq~e~e~~~D~~q~~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~ 386 (645)
T KOG0681|consen 307 REDEQQLESYNKAQGEQESNLDLEQKFPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENL 386 (645)
T ss_pred hhhHHHHHHHHHhhhchhcCccHhhhchhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccH
Confidence 000000 000000000 000 00000
Q ss_pred -CCC--------------------------------------------------------CC-----------ccc----
Q 008184 396 -SWF--------------------------------------------------------ND-----------YED---- 403 (574)
Q Consensus 396 -~~~--------------------------------------------------------~d-----------~~d---- 403 (574)
+|. .| |++
T Consensus 387 ~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~ 466 (645)
T KOG0681|consen 387 ISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEE 466 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhh
Confidence 000 00 000
Q ss_pred ---ccc------------------------CC------------ccccCC-CCCCCCCCCC-CCCCCCCCCCCCCCccCC
Q 008184 404 ---MLE------------------------DT------------WHTDFP-RRSDISDNFY-PGINVGLPMWESYPVLTT 442 (574)
Q Consensus 404 ---~~~------------------------d~------------~~~~~~-er~~~~E~lF-~~~~g~~~~~~~~~~~~~ 442 (574)
.+. |+ +.+.++ ||+++||++| |+.+|
T Consensus 467 ~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG------------- 533 (645)
T KOG0681|consen 467 NKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIG------------- 533 (645)
T ss_pred hhhHHHHHHHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeecccccc-------------
Confidence 000 00 001133 6889999999 66666
Q ss_pred CCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceee
Q 008184 443 KPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVS 522 (574)
Q Consensus 443 ~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~a 522 (574)
.+++||.+++...+.+. |.|.+.+|.+||+||||+|++||+.+||+.||..+.|... +|+|.- ..||...+
T Consensus 534 ----~dQaGl~Ei~~~il~r~-p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS---~i~V~r-asdP~LDA 604 (645)
T KOG0681|consen 534 ----IDQAGLAEIMDTILRRY-PHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGS---SINVVR-ASDPVLDA 604 (645)
T ss_pred ----chhhhHHHHHHHHHHhC-chhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCC---ceEEEe-cCCcchhh
Confidence 68999999999999998 9999999999999999999999999999999999999775 446663 46999999
Q ss_pred EeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184 523 WKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY 558 (574)
Q Consensus 523 W~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~ 558 (574)
|+|||.+|.-.+|..-||||+||+|.|...+.+.+.
T Consensus 605 W~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~ 640 (645)
T KOG0681|consen 605 WRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVA 640 (645)
T ss_pred hhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhh
Confidence 999999999999999999999999999998876654
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.5e-32 Score=284.84 Aligned_cols=274 Identities=18% Similarity=0.168 Sum_probs=197.2
Q ss_pred ceEEccccccCCC--CCCceEecceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChH
Q 008184 153 EFICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNR 230 (574)
Q Consensus 153 ~~~vG~eal~~~~--~~~~~l~~Pi~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~ 230 (574)
.++||++|..... ...+.+++||++|.+. +|++++.+|+|+|++.+...+.+.+ .++++.|...+.
T Consensus 46 ~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~e~ll~~~~~~~~~~~~~~~~---~vvit~P~~~~~ 113 (335)
T PRK13930 46 VLAVGEEAKEMLGRTPGNIEAIRPLKDGVIA---------DFEATEAMLRYFIKKARGRRFFRKP---RIVICVPSGITE 113 (335)
T ss_pred EEEEcHHHHHhhhcCCCCeEEeecCCCCeEc---------CHHHHHHHHHHHHHHHhhcccCCCC---cEEEEECCCCCH
Confidence 3689999986532 3468999999999998 9999999999999554443333232 678888877777
Q ss_pred HHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHH
Q 008184 231 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 305 (574)
Q Consensus 231 ~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L 305 (574)
..|+.+..+||.+|++.++++.++++|+|++|. .+++|||+|++.|+|++|.+|.++. ...+++||+++|+.|
T Consensus 114 ~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l 191 (335)
T PRK13930 114 VERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAI 191 (335)
T ss_pred HHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHH
Confidence 767777778999999999999999999999998 5689999999999999999999875 456899999999999
Q ss_pred HHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCccc
Q 008184 306 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLL 385 (574)
Q Consensus 306 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~ 385 (574)
.+++..+. .+. .+.+.++++|+++|++....... ... .. ..+.. .+
T Consensus 192 ~~~l~~~~--------~~~--~~~~~ae~~K~~~~~~~~~~~~~--~~~-~~--~~~~~------------~~------- 237 (335)
T PRK13930 192 VQYVRRKY--------NLL--IGERTAEEIKIEIGSAYPLDEEE--SME-VR--GRDLV------------TG------- 237 (335)
T ss_pred HHHHHHHh--------CCC--CCHHHHHHHHHHhhcCcCCCCCc--eEE-EE--CccCC------------CC-------
Confidence 99887542 121 24568999999999887531000 000 00 00000 00
Q ss_pred CCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCC
Q 008184 386 VPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGR 465 (574)
Q Consensus 386 ~~e~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lF~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~ 465 (574)
+++ .+.++ +....|.+|+. ..++.+.|.++|++| +
T Consensus 238 -------------------~~~--~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~-~ 272 (335)
T PRK13930 238 -------------------LPK--TIEIS-SEEVREALAEP----------------------LQQIVEAVKSVLEKT-P 272 (335)
T ss_pred -------------------CCe--eEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC-C
Confidence 000 00000 00112333321 236899999999998 8
Q ss_pred hhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecc
Q 008184 466 IDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 531 (574)
Q Consensus 466 ~d~r~~L~~N-IvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~ 531 (574)
.+.+..++.| |+|+||+|++|||.+||++++.. ++.+. .+|..++=.|+++++.
T Consensus 273 ~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~---------~v~~~---~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 273 PELAADIIDRGIVLTGGGALLRGLDKLLSEETGL---------PVHIA---EDPLTCVARGTGKALE 327 (335)
T ss_pred HHHhhHHHhCCEEEECchhcchhHHHHHHHHHCC---------Cceec---CCHHHHHHHHHHHHHh
Confidence 9999999998 99999999999999999999852 22333 2456677778877763
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.6e-32 Score=284.66 Aligned_cols=310 Identities=20% Similarity=0.220 Sum_probs=227.6
Q ss_pred CCeEEEcCCCceeeeecCCCCCCCccceeeeeecCCCCCcchhhHhhhhcCCCCcchhhhcCCcccccccccchhccccc
Q 008184 18 SNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSR 97 (574)
Q Consensus 18 ~~~iVi~~GS~~lkiG~a~d~~P~~iP~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (574)
++.|+||.||.++|||++++..++.+|+|||.++..
T Consensus 5 ~~~igIDlGt~~~~i~~~~~~~~~~~ps~v~~~~~~-------------------------------------------- 40 (334)
T PRK13927 5 SNDLGIDLGTANTLVYVKGKGIVLNEPSVVAIRTDT-------------------------------------------- 40 (334)
T ss_pred cceeEEEcCcceEEEEECCCcEEEecCCEEEEECCC--------------------------------------------
Confidence 456999999999999999987778899999986321
Q ss_pred ccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccccCC--CCCCceEecce
Q 008184 98 KDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVS--PTEPYCIHRPI 175 (574)
Q Consensus 98 ~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal~~~--~~~~~~l~~Pi 175 (574)
.+.++||++|.... ...++.+.+||
T Consensus 41 -----------------------------------------------------~~~~~vG~~a~~~~~~~~~~~~~~~pi 67 (334)
T PRK13927 41 -----------------------------------------------------KKVLAVGEEAKQMLGRTPGNIVAIRPM 67 (334)
T ss_pred -----------------------------------------------------CeEEEecHHHHHHhhcCCCCEEEEecC
Confidence 02357999988753 23578999999
Q ss_pred ecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhH
Q 008184 176 RRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGL 255 (574)
Q Consensus 176 ~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~sv 255 (574)
++|.+. +|+.++.+|+++|.+.+.. +.+++ .++++.|.+.+...|++++.+|+.+|++.++++.+++
T Consensus 68 ~~G~i~---------d~~~~~~ll~~~~~~~~~~-~~~~~---~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~ 134 (334)
T PRK13927 68 KDGVIA---------DFDVTEKMLKYFIKKVHKN-FRPSP---RVVICVPSGITEVERRAVRESALGAGAREVYLIEEPM 134 (334)
T ss_pred CCCeec---------CHHHHHHHHHHHHHHHhhc-cCCCC---cEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChH
Confidence 999998 9999999999999877776 55553 5666766665666567999999999999999999999
Q ss_pred HHHhhcCC-----ceEEEEEeCCCceEEEEe-eCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccH
Q 008184 256 AAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDL 329 (574)
Q Consensus 256 la~ya~G~-----~tglVVDiG~~~T~V~pV-~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~ 329 (574)
+|+|++|. .+++|||+|+++|+|++| ++|++...+ +++||+++|+.|.+++.... .+ ..+.
T Consensus 135 aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~--------~~--~~~~ 201 (334)
T PRK13927 135 AAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY--------NL--LIGE 201 (334)
T ss_pred HHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh--------Cc--CcCH
Confidence 99999997 457999999999999999 888887665 47999999999999886532 12 1345
Q ss_pred HHHHHHHHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCc
Q 008184 330 LMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTW 409 (574)
Q Consensus 330 ~l~e~lKe~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~d~~ 409 (574)
..++++|+++|++...+... ...+..... ..+ +++
T Consensus 202 ~~ae~iK~~~~~~~~~~~~~----------------~~~~~~~~~-~~~--------------------------~~~-- 236 (334)
T PRK13927 202 RTAERIKIEIGSAYPGDEVL----------------EMEVRGRDL-VTG--------------------------LPK-- 236 (334)
T ss_pred HHHHHHHHHhhccCCCCCCc----------------eEEEeCccc-CCC--------------------------CCe--
Confidence 78999999999876421000 000000000 000 000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcC-eEEEcCCCCcCCh
Q 008184 410 HTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCS-IQLIGGVALTGGL 488 (574)
Q Consensus 410 ~~~~~er~~~~E~lF~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~N-IvL~GG~S~ipGf 488 (574)
.+.++ |....|.+++. ..++.++|.++|.+| +.+.++.++++ |+|+||+|++|||
T Consensus 237 ~~~i~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~-~~~~~~~~~~~~IvL~GG~s~ipgl 292 (334)
T PRK13927 237 TITIS-SNEIREALQEP----------------------LSAIVEAVKVALEQT-PPELAADIVDRGIVLTGGGALLRGL 292 (334)
T ss_pred EEEEC-HHHHHHHHHHH----------------------HHHHHHHHHHHHHHC-CchhhhhhhcCCEEEECchhhhhHH
Confidence 00000 10111333321 236899999999998 88899999975 9999999999999
Q ss_pred HHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecc
Q 008184 489 IPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 531 (574)
Q Consensus 489 ~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~ 531 (574)
.+||++++.. +|.+. .+|..++=.|+++++.
T Consensus 293 ~~~l~~~~~~---------~v~~~---~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 293 DKLLSEETGL---------PVHVA---EDPLTCVARGTGKALE 323 (334)
T ss_pred HHHHHHHHCC---------CcEec---CCHHHHHHHHHHHHHh
Confidence 9999999841 23443 3556778888877753
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.96 E-value=6.1e-29 Score=260.15 Aligned_cols=273 Identities=18% Similarity=0.181 Sum_probs=198.9
Q ss_pred eEEccccccCC--CCCCceEecceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 008184 154 FICGEEALRVS--PTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 231 (574)
Q Consensus 154 ~~vG~eal~~~--~~~~~~l~~Pi~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~ 231 (574)
++||++|.+.. ...++.+.+||++|.+. +|+.++.+|+|+|.+.+.......+ +++++.|.+.+..
T Consensus 45 ~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~---------d~~~~~~~~~~~l~~~~~~~~~~~~---~~vitvP~~~~~~ 112 (333)
T TIGR00904 45 LAVGHEAKEMLGKTPGNIVAIRPMKDGVIA---------DFEVTEKMIKYFIKQVHSRKSFFKP---RIVICVPSGITPV 112 (333)
T ss_pred EEEhHHHHHhhhcCCCCEEEEecCCCCEEE---------cHHHHHHHHHHHHHHHhcccccCCC---cEEEEeCCCCCHH
Confidence 67999998863 23689999999999998 9999999999999877664333333 5777777766666
Q ss_pred HHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEe-eCCeeccCCceeecccHHHHHHHH
Q 008184 232 IKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDISRCL 305 (574)
Q Consensus 232 ~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV-~dG~vl~~s~~~l~~GG~~it~~L 305 (574)
.|+.++.+||.+|++.++++.++++|+|++|. .+++|||+|++.|+|++| ++|+++... .++||+++|+.|
T Consensus 113 ~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l 189 (333)
T TIGR00904 113 ERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAI 189 (333)
T ss_pred HHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHH
Confidence 67778889999999999999999999999998 678999999999999999 888887654 489999999999
Q ss_pred HHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCccc
Q 008184 306 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLL 385 (574)
Q Consensus 306 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~ 385 (574)
.+++..+. .. ..+.+.++++|+++|++........ ... .. + .+.. + +
T Consensus 190 ~~~l~~~~--------~~--~~~~~~ae~lK~~l~~~~~~~~~~~-~~~-~~-~-~~~~--~----------~------- 236 (333)
T TIGR00904 190 INYIRRTY--------NL--LIGEQTAERIKIEIGSAYPLNDEPR-KME-VR-G-RDLV--T----------G------- 236 (333)
T ss_pred HHHHHHHh--------cc--cCCHHHHHHHHHHHhcccccccccc-cee-ec-C-cccc--C----------C-------
Confidence 98876431 11 2345789999999998764200000 000 00 0 0000 0 0
Q ss_pred CCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCC
Q 008184 386 VPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGR 465 (574)
Q Consensus 386 ~~e~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lF~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~ 465 (574)
++++..+ . +..+.|.+|+. ..++.+.|.+++++| +
T Consensus 237 -------------------~~~~~~i--~-~~~~~e~i~~~----------------------~~~i~~~i~~~l~~~-~ 271 (333)
T TIGR00904 237 -------------------LPRTIEI--T-SVEVREALQEP----------------------VNQIVEAVKRTLEKT-P 271 (333)
T ss_pred -------------------CCeEEEE--C-HHHHHHHHHHH----------------------HHHHHHHHHHHHHhC-C
Confidence 0000000 0 11233444432 236899999999999 8
Q ss_pred hhHHHHHhc-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecc
Q 008184 466 IDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 531 (574)
Q Consensus 466 ~d~r~~L~~-NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~ 531 (574)
.+.+..+++ +|+|+||+|+||||.+||++++.. +|.+. .+|..++=+||++++.
T Consensus 272 ~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~---------~v~~~---~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 272 PELAADIVERGIVLTGGGALLRNLDKLLSKETGL---------PVIVA---DDPLLCVAKGTGKALE 326 (333)
T ss_pred chhhhhhccCCEEEECcccchhhHHHHHHHHHCC---------Cceec---CChHHHHHHHHHHHHh
Confidence 899999997 799999999999999999999942 22332 3567888888887753
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.95 E-value=9.3e-27 Score=243.59 Aligned_cols=263 Identities=16% Similarity=0.218 Sum_probs=188.1
Q ss_pred eEEccccccCCC--CCCceEecceecCeeeecCCCChhhcHHHHHHHHHHHHh---hhcCCCCCCCcccceeeecCCCCC
Q 008184 154 FICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFD 228 (574)
Q Consensus 154 ~~vG~eal~~~~--~~~~~l~~Pi~~G~i~~~~~~s~~~~~dd~e~iw~~~~~---~~L~i~~~~~~~~~~VLv~e~~~~ 228 (574)
++||++|..... .+++.+.+||++|.|. +|+.++.+|+|++. +.|+..+..+ +++++.|.+.
T Consensus 43 ~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~---------d~d~~~~~l~~~~~~~~~~l~~~~~~~----~vvitvP~~~ 109 (335)
T PRK13929 43 LAIGTEAKNMIGKTPGKIVAVRPMKDGVIA---------DYDMTTDLLKQIMKKAGKNIGMTFRKP----NVVVCTPSGS 109 (335)
T ss_pred EEeCHHHHHhhhcCCCcEEEEecCCCCccC---------CHHHHHHHHHHHHHHHHHhcCCCCCCC----eEEEEcCCCC
Confidence 578999987542 2578899999999998 99999999999997 3577666545 5777777665
Q ss_pred hHHHHH-HHHHHHHhcCCCeEEEehhhHHHHhhcC-----CceEEEEEeCCCceEEEEe-eCCeeccCCceeecccHHHH
Q 008184 229 NREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICV-EDGVALPNTEKTLPFGGEDI 301 (574)
Q Consensus 229 ~~~~r~-~~eilFE~~~~~~v~~~~~svla~ya~G-----~~tglVVDiG~~~T~V~pV-~dG~vl~~s~~~l~~GG~~i 301 (574)
....|+ +.+ +|+.+|++.++++.++++|++|+| ..+++|||+|+++|+|++| ++|.+...+ +++||+++
T Consensus 110 ~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~---~~~GG~~i 185 (335)
T PRK13929 110 TAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHS---IRIGGDQL 185 (335)
T ss_pred CHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecC---cCCHHHHH
Confidence 555554 667 999999999999999999999998 4579999999999999999 666665443 68999999
Q ss_pred HHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccccccc--cccCCCCCCCceeEeeeecCCCCcC
Q 008184 302 SRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGL 379 (574)
Q Consensus 302 t~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~--~y~~~~p~~~~k~~~~~~~~ap~~l 379 (574)
|+.|.+++.... ++. .+...+|++|+++|++.....+...... ....++|.
T Consensus 186 d~~l~~~l~~~~--------~~~--~~~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~----------------- 238 (335)
T PRK13929 186 DEDIVSFVRKKY--------NLL--IGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPK----------------- 238 (335)
T ss_pred HHHHHHHHHHHh--------CcC--cCHHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCe-----------------
Confidence 999999886532 121 2457899999999987542100000000 00000110
Q ss_pred CCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCC--CCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHH
Q 008184 380 FYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSD--ISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAV 456 (574)
Q Consensus 380 f~p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~--~~E~lF~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I 456 (574)
.+.++ +++. ++|.+ ..|.++|
T Consensus 239 ------------------------------~i~i~~~~~~~~i~~~l--------------------------~~i~~~i 262 (335)
T PRK13929 239 ------------------------------TITLESKEIQGAMRESL--------------------------LHILEAI 262 (335)
T ss_pred ------------------------------EEEEcHHHHHHHHHHHH--------------------------HHHHHHH
Confidence 00000 0110 11111 2488999
Q ss_pred HHHHHcCCChhHHHHHhc-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeee
Q 008184 457 TSSILSTGRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 529 (574)
Q Consensus 457 ~~sI~~~~~~d~r~~L~~-NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIl 529 (574)
.+++.+| +.++++.+++ +|+||||+|++|||.+||++++.. +|.+. .+|..++=+|+...
T Consensus 263 ~~~L~~~-~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~---------~v~~~---~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 263 RATLEDC-PPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV---------PVHVA---ANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHhC-CcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC---------CceeC---CCHHHHHHHHHHHH
Confidence 9999999 8999999998 699999999999999999999952 22332 35567777776544
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.93 E-value=1.1e-24 Score=228.19 Aligned_cols=270 Identities=19% Similarity=0.206 Sum_probs=192.0
Q ss_pred eEEccccccCCC--CCCceEecceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCC-CCCCcccceeeecCCCCChH
Q 008184 154 FICGEEALRVSP--TEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIP-RSERNLYSAILVLPESFDNR 230 (574)
Q Consensus 154 ~~vG~eal~~~~--~~~~~l~~Pi~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~-~~~~~~~~~VLv~e~~~~~~ 230 (574)
+++|++|.+... ..++.+.+||++|.+. +|+.++.+|+|++. ++... +.+++ .++++.|.....
T Consensus 42 ~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~---------d~~~~~~~l~~~~~-~~~~~~~~~~p---~~vitvP~~~~~ 108 (336)
T PRK13928 42 LAVGEEARRMVGRTPGNIVAIRPLRDGVIA---------DYDVTEKMLKYFIN-KACGKRFFSKP---RIMICIPTGITS 108 (336)
T ss_pred EEecHHHHHhhhcCCCCEEEEccCCCCeEe---------cHHHHHHHHHHHHH-HHhccCCCCCC---eEEEEeCCCCCH
Confidence 468888877642 2578889999999998 99999999999994 45433 33442 367776655555
Q ss_pred HHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHH
Q 008184 231 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 305 (574)
Q Consensus 231 ~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L 305 (574)
..|++++.+|+.+|++.+.++.++++|+|++|. ..++|||+|+++|+|++|.+|.++... .+++||+++|+.|
T Consensus 109 ~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~--~~~lGG~did~~i 186 (336)
T PRK13928 109 VEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSS--SIKVAGDKFDEAI 186 (336)
T ss_pred HHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeC--CcCCHHHHHHHHH
Confidence 556799999999999999999999999999997 679999999999999999999877543 6899999999999
Q ss_pred HHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccccccc--cccCCCCCCCceeEeeeecCCCCcCCCCc
Q 008184 306 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVH--SYEDGMPPGSHKTRLIALNVPPMGLFYPK 383 (574)
Q Consensus 306 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~--~y~~~~p~~~~k~~~~~~~~ap~~lf~p~ 383 (574)
.+.+..+. .+ ..+...++++|+++|.+............ ....++|..
T Consensus 187 ~~~l~~~~--------~~--~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-------------------- 236 (336)
T PRK13928 187 IRYIRKKY--------KL--LIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKT-------------------- 236 (336)
T ss_pred HHHHHHHh--------ch--hcCHHHHHHHHHHhcccccccCCcEEEEecccccCCCceE--------------------
Confidence 99886431 11 13446799999999876432100000000 000000000
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcC
Q 008184 384 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 463 (574)
Q Consensus 384 ~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lF~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~ 463 (574)
+.+. |....|.+++ -...+.+.|.+++.++
T Consensus 237 ---------------------------~~i~-~~~~~eii~~----------------------~~~~i~~~i~~~l~~~ 266 (336)
T PRK13928 237 ---------------------------ITVT-SEEIREALKE----------------------PVSAIVQAVKSVLERT 266 (336)
T ss_pred ---------------------------EEEC-HHHHHHHHHH----------------------HHHHHHHHHHHHHHhC
Confidence 0000 0001122211 1125788999999998
Q ss_pred CChhHHHHHhc-CeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecc
Q 008184 464 GRIDLQRKLFC-SIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 531 (574)
Q Consensus 464 ~~~d~r~~L~~-NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~ 531 (574)
+.++++.++. +|+|+||+|++||+.++|++++.. +|.+. .+|..++=+|+++++.
T Consensus 267 -~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~---------~v~~~---~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 267 -PPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV---------PVYIA---EDPISCVALGTGKMLE 322 (336)
T ss_pred -CccccHhhcCCCEEEECcccchhhHHHHHHHHHCC---------Cceec---CCHHHHHHHHHHHHHh
Confidence 7888888998 799999999999999999999952 22333 3677888899888753
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.90 E-value=8.6e-23 Score=210.21 Aligned_cols=268 Identities=20% Similarity=0.305 Sum_probs=177.9
Q ss_pred eEEccccccCCCC--CCceEecceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeee-cCCCCChH
Q 008184 154 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILV-LPESFDNR 230 (574)
Q Consensus 154 ~~vG~eal~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv-~e~~~~~~ 230 (574)
+.+|++|..+-.+ +++.+.+|+++|.|. |++..+.+++|.+++.++-..-..+ .|++ +|.-.+..
T Consensus 40 ~avG~~A~~m~gktp~~i~~~~Pl~~GvI~---------D~~~~~~~l~~~l~k~~~~~~~~~p---~vvi~vP~~~T~v 107 (326)
T PF06723_consen 40 LAVGDEAKAMLGKTPDNIEVVRPLKDGVIA---------DYEAAEEMLRYFLKKALGRRSFFRP---RVVICVPSGITEV 107 (326)
T ss_dssp EEESHHHHTTTTS-GTTEEEE-SEETTEES---------SHHHHHHHHHHHHHHHHTSS-SS-----EEEEEE-SS--HH
T ss_pred EEEhHHHHHHhhcCCCccEEEccccCCccc---------CHHHHHHHHHHHHHHhccCCCCCCC---eEEEEeCCCCCHH
Confidence 3589988776533 689999999999998 9999999999999866663222222 3444 45555555
Q ss_pred HHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHH
Q 008184 231 EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 305 (574)
Q Consensus 231 ~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L 305 (574)
+.|.+.+.+ ...|+..++++.++++|++|+|. ...+|||||+++|.|+-+.-|-++. ...+.+||+++++.+
T Consensus 108 errA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~~~DeaI 184 (326)
T PF06723_consen 108 ERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGDDIDEAI 184 (326)
T ss_dssp HHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHH
T ss_pred HHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCcchhHHH
Confidence 544466655 67999999999999999999996 2579999999999999998888874 466899999999999
Q ss_pred HHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCcccccccc--ccccCCCCCCCceeEeeeecCCCCcCCCCc
Q 008184 306 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVV--HSYEDGMPPGSHKTRLIALNVPPMGLFYPK 383 (574)
Q Consensus 306 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~--~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~ 383 (574)
.+.++++. ++ ......+|+||++++++...+....... .+...++|.. ..+...
T Consensus 185 ~~~ir~~y--------~l--~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~---~~i~~~----------- 240 (326)
T PF06723_consen 185 IRYIREKY--------NL--LIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKS---IEITSS----------- 240 (326)
T ss_dssp HHHHHHHH--------SE--E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEE---EEEEHH-----------
T ss_pred HHHHHHhh--------Cc--ccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEE---EEEcHH-----------
Confidence 99998762 23 3567899999999998764311110011 1111222210 000000
Q ss_pred ccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcC
Q 008184 384 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILST 463 (574)
Q Consensus 384 ~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lF~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~ 463 (574)
.+.+.+- .....+.++|.+.+.++
T Consensus 241 ----------------------------------ev~~ai~----------------------~~~~~I~~~i~~~Le~~ 264 (326)
T PF06723_consen 241 ----------------------------------EVREAIE----------------------PPVDQIVEAIKEVLEKT 264 (326)
T ss_dssp ----------------------------------HHHHHHH----------------------HHHHHHHHHHHHHHHTS
T ss_pred ----------------------------------HHHHHHH----------------------HHHHHHHHHHHHHHHhC
Confidence 0000000 11235889999999999
Q ss_pred CChhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeee
Q 008184 464 GRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 529 (574)
Q Consensus 464 ~~~d~r~~L~~N-IvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIl 529 (574)
|+++..+++.| |+||||+|+++||+++|++++. + +|.+.. +|.+++=+|+..+
T Consensus 265 -pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~--------~-pV~va~---~P~~~va~G~~~~ 318 (326)
T PF06723_consen 265 -PPELAADILENGIVLTGGGALLRGLDEYISEETG--------V-PVRVAD---DPLTAVARGAGKL 318 (326)
T ss_dssp --HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS--------S--EEE-S---STTTHHHHHHHHT
T ss_pred -CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC--------C-CEEEcC---CHHHHHHHHHHHH
Confidence 99999998875 9999999999999999999994 2 567654 6678887886544
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.67 E-value=1.5e-15 Score=151.62 Aligned_cols=269 Identities=19% Similarity=0.228 Sum_probs=179.6
Q ss_pred eEEccccccCCCC--CCceEecceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHH
Q 008184 154 FICGEEALRVSPT--EPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNRE 231 (574)
Q Consensus 154 ~~vG~eal~~~~~--~~~~l~~Pi~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~ 231 (574)
..||+||..+-.+ ++....+|+++|+|- +++..|.++.|.+++..+=... .+ +|.+++--|..-..
T Consensus 47 ~aVG~eAK~MlGrTP~ni~aiRPmkdGVIA---------d~~~te~ml~~fik~~~~~~~~-~~--~prI~i~vP~g~T~ 114 (342)
T COG1077 47 LAVGEEAKQMLGRTPGNIVAIRPMKDGVIA---------DFEVTELMLKYFIKKVHKNGSS-FP--KPRIVICVPSGITD 114 (342)
T ss_pred EEehHHHHHHhccCCCCceEEeecCCcEee---------cHHHHHHHHHHHHHHhccCCCC-CC--CCcEEEEecCCccH
Confidence 4689999876532 579999999999998 9999999999998644322211 11 13333333333333
Q ss_pred HH-HHHHHHHHhcCCCeEEEehhhHHHHhhcCC----c-eEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHH
Q 008184 232 IK-EMLSIVLRDLRFASAVVHQEGLAAVFGNGL----S-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 305 (574)
Q Consensus 232 ~r-~~~eilFE~~~~~~v~~~~~svla~ya~G~----~-tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L 305 (574)
++ +...-..++-|...++++.++++|++|+|+ . .++|||||.++|.|.-+..|=++. ...+.+||+.+++.+
T Consensus 115 VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~--~~Sirv~GD~~De~I 192 (342)
T COG1077 115 VERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS--SSSVRVGGDKMDEAI 192 (342)
T ss_pred HHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE--EeeEEEecchhhHHH
Confidence 33 344445678899999999999999999997 3 489999999999999986655552 344789999999999
Q ss_pred HHHHHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccc----cccccccCCCCCCCceeEeeeecCCCCcCCC
Q 008184 306 LWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAV----AVVHSYEDGMPPGSHKTRLIALNVPPMGLFY 381 (574)
Q Consensus 306 ~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~----~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~ 381 (574)
...++++. ++ ...-..+|+||.+..++.+.+.+.. ...++...++|.
T Consensus 193 i~yvr~~~--------nl--~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk------------------- 243 (342)
T COG1077 193 IVYVRKKY--------NL--LIGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPK------------------- 243 (342)
T ss_pred HHHHHHHh--------Ce--eecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCCe-------------------
Confidence 99998763 22 3455679999999888765211100 000111111110
Q ss_pred CcccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHH
Q 008184 382 PKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSIL 461 (574)
Q Consensus 382 p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~er~~~~E~lF~~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~ 461 (574)
.. .+ . ...+.|.|- .....|.++|...+.
T Consensus 244 --~i------------------------~i--~-s~ev~eal~----------------------~~v~~Iveair~~Le 272 (342)
T COG1077 244 --TI------------------------TI--N-SEEIAEALE----------------------EPLNGIVEAIRLVLE 272 (342)
T ss_pred --eE------------------------EE--c-HHHHHHHHH----------------------HHHHHHHHHHHHHHh
Confidence 00 00 0 000001110 112368899999999
Q ss_pred cCCChhHHHHHhcC-eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeee
Q 008184 462 STGRIDLQRKLFCS-IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 529 (574)
Q Consensus 462 ~~~~~d~r~~L~~N-IvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIl 529 (574)
+| |+++-...+.+ |+|+||+|++.||++.|.+|..- .|.+.+ +|-..+-+|+...
T Consensus 273 ~t-pPeL~~DI~ergivltGGGalLrglD~~i~~et~~---------pv~ia~---~pL~~Va~G~G~~ 328 (342)
T COG1077 273 KT-PPELAADIVERGIVLTGGGALLRGLDRLLSEETGV---------PVIIAD---DPLTCVAKGTGKA 328 (342)
T ss_pred hC-CchhcccHhhCceEEecchHHhcCchHhHHhccCC---------eEEECC---ChHHHHHhccchh
Confidence 99 88999999999 99999999999999999988742 345543 4556666665443
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.45 E-value=3.6e-12 Score=127.15 Aligned_cols=134 Identities=19% Similarity=0.177 Sum_probs=104.7
Q ss_pred cceecCeeeecCCCChhhcHHHHHHHHHHHHh---hhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEE
Q 008184 173 RPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAV 249 (574)
Q Consensus 173 ~Pi~~G~i~~~~~~s~~~~~dd~e~iw~~~~~---~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~ 249 (574)
.||.+|.|. |.+..+.+++++.. ..++.+. .. +|+-+|..++..+.+ .+.-.++.-|+.-+.
T Consensus 29 ~~~~~g~I~---------d~~~~~~~l~~l~~~a~~~~g~~~-~~----vvisVP~~~~~~~r~-a~~~a~~~aGl~~~~ 93 (239)
T TIGR02529 29 DVVRDGIVV---------DFLGAVEIVRRLKDTLEQKLGIEL-TH----AATAIPPGTIEGDPK-VIVNVIESAGIEVLH 93 (239)
T ss_pred ccccCCeEE---------EhHHHHHHHHHHHHHHHHHhCCCc-Cc----EEEEECCCCCcccHH-HHHHHHHHcCCceEE
Confidence 489999999 99999999999985 3444321 22 566677777766533 344566778999999
Q ss_pred EehhhHHHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccH
Q 008184 250 VHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDL 329 (574)
Q Consensus 250 ~~~~svla~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~ 329 (574)
+..++++++.+++....+|||+|++.|.++-+.+|.++. ...+++||+++|+.+.+.+. .++
T Consensus 94 li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~----------------i~~ 155 (239)
T TIGR02529 94 VLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG----------------ISF 155 (239)
T ss_pred EeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC----------------CCH
Confidence 999999999998888889999999999999999998774 45678999999998875432 245
Q ss_pred HHHHHHHHhc
Q 008184 330 LMLNRIKESY 339 (574)
Q Consensus 330 ~l~e~lKe~~ 339 (574)
..+|++|...
T Consensus 156 ~~AE~~K~~~ 165 (239)
T TIGR02529 156 EEAEEYKRGH 165 (239)
T ss_pred HHHHHHHHhc
Confidence 6789998754
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.23 E-value=2.8e-10 Score=115.48 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=101.0
Q ss_pred ecceecCeeeecCCCChhhcHHHHHHHHHHHHh---hhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeE
Q 008184 172 HRPIRRGHLNISQHYPMQQVLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASA 248 (574)
Q Consensus 172 ~~Pi~~G~i~~~~~~s~~~~~dd~e~iw~~~~~---~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v 248 (574)
..++++|.+. |++.....++++.. +.++++.. . .++-+|+.++....+.+. -+.+..|+.-.
T Consensus 55 ~~~vr~G~i~---------di~~a~~~i~~~~~~ae~~~g~~i~-~----v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~ 119 (267)
T PRK15080 55 ADVVRDGIVV---------DFIGAVTIVRRLKATLEEKLGRELT-H----AATAIPPGTSEGDPRAII-NVVESAGLEVT 119 (267)
T ss_pred ccccCCCEEe---------eHHHHHHHHHHHHHHHHHHhCCCcC-e----EEEEeCCCCCchhHHHHH-HHHHHcCCceE
Confidence 4588999998 89988888888875 24555422 2 344466666544322333 67788999999
Q ss_pred EEehhhHHHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCccccccccccc
Q 008184 249 VVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMD 328 (574)
Q Consensus 249 ~~~~~svla~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d 328 (574)
.+..++.+++.+.+...++|||+|+++|.++-+.+|.++.. ..+++||+++|+.+.+.+. .+
T Consensus 120 ~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~----------------i~ 181 (267)
T PRK15080 120 HVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG----------------IS 181 (267)
T ss_pred EEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC----------------CC
Confidence 99999999999888777899999999999998899987753 4679999999999886542 23
Q ss_pred HHHHHHHHHh
Q 008184 329 LLMLNRIKES 338 (574)
Q Consensus 329 ~~l~e~lKe~ 338 (574)
+..+|.+|..
T Consensus 182 ~~eAE~lK~~ 191 (267)
T PRK15080 182 FEEAEQYKRD 191 (267)
T ss_pred HHHHHHHHhc
Confidence 4568888864
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.11 E-value=1.7e-09 Score=122.49 Aligned_cols=92 Identities=21% Similarity=0.281 Sum_probs=69.0
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEeeCC--ee-ccCC
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDG--VA-LPNT 290 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~dG--~v-l~~s 290 (574)
+|+-+|..|+..+ |+.+.-..+..|+..+.++.++.+|++++|. ...+|+|+|++++.|+-+.-| .. +..+
T Consensus 138 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~ 216 (621)
T CHL00094 138 AVITVPAYFNDSQ-RQATKDAGKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLST 216 (621)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEE
Confidence 5777888887555 4444445678899999999999999998875 357999999999999887543 21 1122
Q ss_pred ceeecccHHHHHHHHHHHHHh
Q 008184 291 EKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 291 ~~~l~~GG~~it~~L~~lL~~ 311 (574)
....++||+++|+.|.+.+..
T Consensus 217 ~gd~~lGG~d~D~~l~~~~~~ 237 (621)
T CHL00094 217 SGDTHLGGDDFDKKIVNWLIK 237 (621)
T ss_pred ecCCCcChHHHHHHHHHHHHH
Confidence 334689999999999876543
No 27
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.08 E-value=4.7e-09 Score=119.54 Aligned_cols=115 Identities=19% Similarity=0.236 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHHHh---hhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC----
Q 008184 191 VLEDLYAIWDWILT---EKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL---- 263 (574)
Q Consensus 191 ~~dd~e~iw~~~~~---~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~---- 263 (574)
..+....++.++.. +.++-+.. . +|+-+|..|+..+ |+.+.-..+.-|+..+.++.++.+|++++|.
T Consensus 149 peei~a~iL~~lk~~ae~~lg~~v~-~----~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~ 222 (673)
T PLN03184 149 AEEISAQVLRKLVDDASKFLNDKVT-K----AVITVPAYFNDSQ-RTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKS 222 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC-e----EEEEECCCCCHHH-HHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCC
Confidence 34444555555543 34553222 2 5777787887665 4455556788899999999999999988765
Q ss_pred -ceEEEEEeCCCceEEEEee--CCee-ccCCceeecccHHHHHHHHHHHHHh
Q 008184 264 -STACVVNMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 264 -~tglVVDiG~~~T~V~pV~--dG~v-l~~s~~~l~~GG~~it~~L~~lL~~ 311 (574)
..-+|+|+|++++.|+-+. +|.. +..+.-...+||+++|+.|.+.+..
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred CCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHH
Confidence 3579999999999987764 3331 1122234689999999999876543
No 28
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.06 E-value=3.2e-09 Score=120.83 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=71.1
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEee--CCeec-cCC
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVAL-PNT 290 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~--dG~vl-~~s 290 (574)
+|+-+|..|+..+ |+.+.-..+.-|++-+.++.++.+|++++|. ..-+|+|+|++++.|+-+. +|... ..+
T Consensus 177 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~ 255 (663)
T PTZ00400 177 AVITVPAYFNDSQ-RQATKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKAT 255 (663)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEec
Confidence 5777888887765 4455557778899999999999999998875 3679999999999998764 56432 223
Q ss_pred ceeecccHHHHHHHHHHHHHh
Q 008184 291 EKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 291 ~~~l~~GG~~it~~L~~lL~~ 311 (574)
.....+||+++|+.|.+.+..
T Consensus 256 ~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 256 NGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred ccCCCcCHHHHHHHHHHHHHH
Confidence 334689999999999876643
No 29
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.99 E-value=4.7e-09 Score=119.09 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=68.7
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEeeC--Cee-ccCC
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVED--GVA-LPNT 290 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~d--G~v-l~~s 290 (574)
.|+-+|..|+..+ |+.+.-..+..|++-+.++.++.+|++++|. .+.+|+|+|+++|.|+-+.- |.+ +..+
T Consensus 136 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~ 214 (627)
T PRK00290 136 AVITVPAYFNDAQ-RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLST 214 (627)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEe
Confidence 5777888887665 4444556678899999999999999988764 46899999999999877643 221 1222
Q ss_pred ceeecccHHHHHHHHHHHHHh
Q 008184 291 EKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 291 ~~~l~~GG~~it~~L~~lL~~ 311 (574)
.....+||.++|+.|.+++..
T Consensus 215 ~gd~~lGG~d~D~~l~~~~~~ 235 (627)
T PRK00290 215 NGDTHLGGDDFDQRIIDYLAD 235 (627)
T ss_pred cCCCCcChHHHHHHHHHHHHH
Confidence 234689999999999876543
No 30
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.98 E-value=1.8e-09 Score=121.96 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=67.5
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC------ceEEEEEeCCCceEEEEee--CCee-ccC
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVA-LPN 289 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~------~tglVVDiG~~~T~V~pV~--dG~v-l~~ 289 (574)
+|+-+|..|+..+ |+.+.-..+..|++-+.++.++.+|++++|. .+-+|+|+|+++|.|+-+. +|.+ +..
T Consensus 133 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~ 211 (595)
T TIGR02350 133 AVITVPAYFNDAQ-RQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLS 211 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEE
Confidence 5777888887765 4444446677899999999999999887654 3579999999999887763 3422 112
Q ss_pred CceeecccHHHHHHHHHHHHH
Q 008184 290 TEKTLPFGGEDISRCLLWTQR 310 (574)
Q Consensus 290 s~~~l~~GG~~it~~L~~lL~ 310 (574)
+.....+||+++|+.|.+++.
T Consensus 212 ~~gd~~lGG~d~D~~l~~~~~ 232 (595)
T TIGR02350 212 TAGDTHLGGDDFDQRIIDWLA 232 (595)
T ss_pred ecCCcccCchhHHHHHHHHHH
Confidence 223457999999999987654
No 31
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.98 E-value=6.9e-09 Score=118.00 Aligned_cols=110 Identities=20% Similarity=0.256 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC------ceEEE
Q 008184 195 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACV 268 (574)
Q Consensus 195 ~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~------~tglV 268 (574)
+..+++.+- ..|+.+.. . +|+-+|..|+..+ |+.+.-..+.-|+.-+.++.++.+|++++|. .+-+|
T Consensus 118 L~~lk~~ae-~~lg~~v~-~----~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV 190 (653)
T PRK13411 118 LQKLKQDAE-AYLGEPVT-Q----AVITVPAYFTDAQ-RQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILV 190 (653)
T ss_pred HHHHHHHHH-HHhCCCcc-e----EEEEECCCCCcHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEE
Confidence 444555442 45654322 2 5777888887765 3444456778899999999999999988875 24799
Q ss_pred EEeCCCceEEEEee--CCee-ccCCceeecccHHHHHHHHHHHHHh
Q 008184 269 VNMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 269 VDiG~~~T~V~pV~--dG~v-l~~s~~~l~~GG~~it~~L~~lL~~ 311 (574)
+|+|++++.|+-+. +|.. +..+.....+||+++++.|.+.+..
T Consensus 191 ~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~ 236 (653)
T PRK13411 191 FDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVE 236 (653)
T ss_pred EEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 99999999987663 3332 2222234579999999999876543
No 32
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.96 E-value=6.2e-09 Score=117.27 Aligned_cols=111 Identities=21% Similarity=0.218 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEE
Q 008184 195 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVV 269 (574)
Q Consensus 195 ~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVV 269 (574)
+..|++.+- ..++.+.. . +|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.+|++++|. .+-+|+
T Consensus 114 L~~lk~~a~-~~lg~~v~-~----~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~ 186 (599)
T TIGR01991 114 LKKLKQRAE-ESLGGDLV-G----AVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVY 186 (599)
T ss_pred HHHHHHHHH-HHhCCCcc-e----EEEEECCCCCHHH-HHHHHHHHHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEE
Confidence 344444443 45664432 2 5777888887766 4455556788999999999999999987763 457999
Q ss_pred EeCCCceEEEEee--CCee-ccCCceeecccHHHHHHHHHHHHHhc
Q 008184 270 NMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQRHH 312 (574)
Q Consensus 270 DiG~~~T~V~pV~--dG~v-l~~s~~~l~~GG~~it~~L~~lL~~~ 312 (574)
|+|++++.|+.+. +|.. +..+.....+||+++|+.|.+.+..+
T Consensus 187 DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 187 DLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred EcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999998774 4432 11122235899999999999877543
No 33
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.96 E-value=7.1e-09 Score=117.38 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=70.8
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEee--CCee-ccCC
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 290 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~--dG~v-l~~s 290 (574)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.+|++++|. ..-+|+|+|++++.|+-+. +|.. +..+
T Consensus 163 aVITVPayF~~~q-R~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at 241 (657)
T PTZ00186 163 AVVTCPAYFNDAQ-RQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKAT 241 (657)
T ss_pred EEEEECCCCChHH-HHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEe
Confidence 5777777777665 4556667788899999999999999988874 3579999999999998875 6643 2223
Q ss_pred ceeecccHHHHHHHHHHHHHh
Q 008184 291 EKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 291 ~~~l~~GG~~it~~L~~lL~~ 311 (574)
.--..+||+|+++.|.+.+..
T Consensus 242 ~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 242 NGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred cCCCCCCchhHHHHHHHHHHH
Confidence 335689999999998876543
No 34
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.89 E-value=2.3e-08 Score=113.75 Aligned_cols=110 Identities=22% Similarity=0.272 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEE
Q 008184 195 LYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVV 269 (574)
Q Consensus 195 ~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVV 269 (574)
+.++++.+- ..|+-+.. . +|+-+|..|+..+ |+.+.-..+.-|+.-+.++.++.+|++++|. .+-+|+
T Consensus 120 L~~lk~~ae-~~lg~~v~-~----~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~ 192 (668)
T PRK13410 120 LRKLADDAS-RYLGEPVT-G----AVITVPAYFNDSQ-RQATRDAGRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVF 192 (668)
T ss_pred HHHHHHHHH-HHhCCCcc-e----EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhccccCCCCEEEEE
Confidence 455555553 45654322 2 6777888887765 3444555678899999999999999998875 358999
Q ss_pred EeCCCceEEEEee--CCee-ccCCceeecccHHHHHHHHHHHHHh
Q 008184 270 NMGAQVTSVICVE--DGVA-LPNTEKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 270 DiG~~~T~V~pV~--dG~v-l~~s~~~l~~GG~~it~~L~~lL~~ 311 (574)
|+|++++.|+-+. +|.. +..+..-..+||+++++.|.+.+..
T Consensus 193 DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~ 237 (668)
T PRK13410 193 DLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAE 237 (668)
T ss_pred ECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHH
Confidence 9999999987764 4432 2222234579999999998876543
No 35
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.83 E-value=1.6e-08 Score=109.39 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHH
Q 008184 230 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 304 (574)
Q Consensus 230 ~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~ 304 (574)
..++.+.+ +++..|+.-..+..+++++++++.. ...||||+|+++|+++-+.+|.++ ....+++||+++|+.
T Consensus 166 ~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it~d 242 (420)
T PRK09472 166 DMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVTSD 242 (420)
T ss_pred HHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHHHH
Confidence 33445655 6799999999999999999998754 348999999999999999999877 445699999999999
Q ss_pred HHHHHHhcCCCCCcccccccccccHHHHHHHHHhceec
Q 008184 305 LLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI 342 (574)
Q Consensus 305 L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v 342 (574)
+...|. .+...+|++|.++...
T Consensus 243 Ia~~l~----------------i~~~~AE~lK~~~g~~ 264 (420)
T PRK09472 243 IAYAFG----------------TPPSDAEAIKVRHGCA 264 (420)
T ss_pred HHHHhC----------------cCHHHHHHHHHhccee
Confidence 986542 2356799999887643
No 36
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.82 E-value=4.7e-08 Score=111.27 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=69.1
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-------ceEEEEEeCCCceEEEEee--CCeec-c
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGVAL-P 288 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-------~tglVVDiG~~~T~V~pV~--dG~vl-~ 288 (574)
+|+-+|..|+..+ |+.+.-..+..|+.-+.++.++.+|++++|. .+-+|+|+|++++.|+-|. +|..- .
T Consensus 143 ~VItVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~ 221 (653)
T PTZ00009 143 AVVTVPAYFNDSQ-RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVK 221 (653)
T ss_pred eEEEeCCCCCHHH-HHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 5777777887665 4556667788899999999999999987764 3689999999999987764 55422 1
Q ss_pred CCceeecccHHHHHHHHHHHHH
Q 008184 289 NTEKTLPFGGEDISRCLLWTQR 310 (574)
Q Consensus 289 ~s~~~l~~GG~~it~~L~~lL~ 310 (574)
.+.-...+||+++|+.|.+.+.
T Consensus 222 a~~gd~~lGG~d~D~~l~~~~~ 243 (653)
T PTZ00009 222 ATAGDTHLGGEDFDNRLVEFCV 243 (653)
T ss_pred EecCCCCCChHHHHHHHHHHHH
Confidence 2223468999999999987654
No 37
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.77 E-value=1.3e-07 Score=100.71 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=72.2
Q ss_pred HHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcC
Q 008184 239 VLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQ 313 (574)
Q Consensus 239 lFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~ 313 (574)
+++..|+.-+.+..+++++++++.. ...+|||+|+++|+++.+.+|.... ...+++||+++|+.+.+.+.
T Consensus 166 ~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~l~--- 240 (371)
T TIGR01174 166 CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIAKALR--- 240 (371)
T ss_pred HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHHHHhC---
Confidence 6688999999999999999988753 2479999999999999999998764 45689999999998876442
Q ss_pred CCCCcccccccccccHHHHHHHHHhceecc
Q 008184 314 TWPQIRTDILTKAMDLLMLNRIKESYCEIK 343 (574)
Q Consensus 314 ~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~ 343 (574)
..+..+|++|.+++...
T Consensus 241 -------------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 241 -------------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred -------------CCHHHHHHHHHHeeEec
Confidence 23567999999998764
No 38
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.61 E-value=1.5e-07 Score=105.64 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=70.5
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEee--CCee-ccCC
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 290 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~--dG~v-l~~s 290 (574)
+|+-+|..|+..+ |+.+.-..+.-|+.-+.++.++.+|++++|. .+-+|+|+|++++.|+-+. +|.. +-.+
T Consensus 144 aVITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at 222 (595)
T PRK01433 144 AVITVPAHFNDAA-RGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIAT 222 (595)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEE
Confidence 6777787887665 4556667788899999999999999998875 3469999999999987773 5532 1112
Q ss_pred ceeecccHHHHHHHHHHHHHhc
Q 008184 291 EKTLPFGGEDISRCLLWTQRHH 312 (574)
Q Consensus 291 ~~~l~~GG~~it~~L~~lL~~~ 312 (574)
.--..+||+|++..|.+.+..+
T Consensus 223 ~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 223 NGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred cCCcccChHHHHHHHHHHHHHh
Confidence 2235799999999999877654
No 39
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.59 E-value=5.6e-07 Score=101.86 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=70.1
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEee--CCee-ccCC
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE--DGVA-LPNT 290 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~--dG~v-l~~s 290 (574)
.|+-+|..|+..+ |+.+.-..+..|++-+.++.++.+|++++|. .+-+|+|+|++++.|+.+. .|.. +..+
T Consensus 152 ~VITVPa~f~~~q-R~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat 230 (616)
T PRK05183 152 AVITVPAYFDDAQ-RQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLAT 230 (616)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEe
Confidence 5777888887665 4455667788999999999999999987764 3479999999999988774 4432 1122
Q ss_pred ceeecccHHHHHHHHHHHHHhc
Q 008184 291 EKTLPFGGEDISRCLLWTQRHH 312 (574)
Q Consensus 291 ~~~l~~GG~~it~~L~~lL~~~ 312 (574)
..-..+||+++|+.|.+.+..+
T Consensus 231 ~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 231 GGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred cCCCCcCHHHHHHHHHHHHHHH
Confidence 2336799999999999877553
No 40
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.44 E-value=9.7e-07 Score=94.03 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCCCeEEEehhhHHHHhhcC-----CceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHH
Q 008184 234 EMLSIVLRDLRFASAVVHQEGLAAVFGNG-----LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWT 308 (574)
Q Consensus 234 ~~~eilFE~~~~~~v~~~~~svla~ya~G-----~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~l 308 (574)
+-+.-++|+-|..-..++-++++|+.++= .-.+|+||+|+++|+|+.+.+|.+.... .+++||+++|.-+...
T Consensus 168 ~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvgG~~vT~DIa~~ 245 (418)
T COG0849 168 ENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTG--VIPVGGDHVTKDIAKG 245 (418)
T ss_pred HHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeCccHHHHHHHHH
Confidence 45556789999999999999999988763 2579999999999999999999998554 5999999999999987
Q ss_pred HHhcCCCCCcccccccccccHHHHHHHHHhceec
Q 008184 309 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI 342 (574)
Q Consensus 309 L~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v 342 (574)
|. .+++-+|+||.++...
T Consensus 246 l~----------------t~~~~AE~iK~~~g~a 263 (418)
T COG0849 246 LK----------------TPFEEAERIKIKYGSA 263 (418)
T ss_pred hC----------------CCHHHHHHHHHHcCcc
Confidence 63 2456799999988643
No 41
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5e-06 Score=93.15 Aligned_cols=110 Identities=22% Similarity=0.252 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEE
Q 008184 194 DLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACV 268 (574)
Q Consensus 194 d~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglV 268 (574)
-+.++|+++ ...|+-...+ .|+-+|..|+..+ |+.+.-..+..|++-+.++.++.+|+|++|. .+-+|
T Consensus 104 ~L~~lk~~a-e~~lg~~v~~-----~VItVPayF~d~q-R~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV 176 (579)
T COG0443 104 ILTKLKEDA-EAYLGEKVTD-----AVITVPAYFNDAQ-RQATKDAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLV 176 (579)
T ss_pred HHHHHHHHH-HHhhCCCcce-----EEEEeCCCCCHHH-HHHHHHHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEE
Confidence 356666666 3566644332 4666777777666 6678888899999999999999999999885 46899
Q ss_pred EEeCCCceEEEEee--CCe-eccCCceeecccHHHHHHHHHHHHH
Q 008184 269 VNMGAQVTSVICVE--DGV-ALPNTEKTLPFGGEDISRCLLWTQR 310 (574)
Q Consensus 269 VDiG~~~T~V~pV~--dG~-vl~~s~~~l~~GG~~it~~L~~lL~ 310 (574)
+|+|++++.|+=|. +|. -+..+.....+||+|++..|...+.
T Consensus 177 ~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~ 221 (579)
T COG0443 177 YDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLV 221 (579)
T ss_pred EEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHH
Confidence 99999999998884 343 2234455678999999999886543
No 42
>PRK11678 putative chaperone; Provisional
Probab=98.26 E-value=2.6e-05 Score=84.89 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=63.3
Q ss_pred eeeecCCCCC-----hHHH--HHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-----ceEEEEEeCCCceEEEEee-CC-
Q 008184 219 AILVLPESFD-----NREI--KEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-----STACVVNMGAQVTSVICVE-DG- 284 (574)
Q Consensus 219 ~VLv~e~~~~-----~~~~--r~~~eilFE~~~~~~v~~~~~svla~ya~G~-----~tglVVDiG~~~T~V~pV~-dG- 284 (574)
+|+-+|..|+ ..+. ++.+.-..+.-||+.+.++.++++|++++|. ..-+|+|+|++++.++-|. ++
T Consensus 152 ~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 152 AVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred EEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCc
Confidence 5776777776 3332 2235566788999999999999999998874 4689999999999887773 21
Q ss_pred ---------eeccCCceeecccHHHHHHHHH
Q 008184 285 ---------VALPNTEKTLPFGGEDISRCLL 306 (574)
Q Consensus 285 ---------~vl~~s~~~l~~GG~~it~~L~ 306 (574)
-++..+- ..+||+|+++.|.
T Consensus 232 ~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 232 WRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred ccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 1232222 3699999999986
No 43
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.21 E-value=4.2e-06 Score=94.77 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=67.4
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC------ceEEEEEeCCCceEEEEee--CCeec-cC
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVICVE--DGVAL-PN 289 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~------~tglVVDiG~~~T~V~pV~--dG~vl-~~ 289 (574)
+|+-+|..|+..+ |+.+.-..+..|++.+.++.++.||+++++. .+-+|+|+|++++.|+-|. +|..- ..
T Consensus 138 ~vitVPa~~~~~q-r~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~ 216 (602)
T PF00012_consen 138 VVITVPAYFTDEQ-RQALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLA 216 (602)
T ss_dssp EEEEE-TT--HHH-HHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEE
T ss_pred ceeeechhhhhhh-hhcccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccc
Confidence 5777888888776 4566667788999999999999999877653 4689999999999888774 55432 22
Q ss_pred CceeecccHHHHHHHHHHHHHh
Q 008184 290 TEKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 290 s~~~l~~GG~~it~~L~~lL~~ 311 (574)
+.....+||+++++.|.+++..
T Consensus 217 ~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 217 TAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccceecceeeccccc
Confidence 3345689999999999887654
No 44
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.11 E-value=5.9e-05 Score=79.49 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEehhhHHHHhhc----------C-Cc-eEEEEEeCCCceEEEEeeCCeeccCCceeeccc
Q 008184 230 REIKEMLSIVLRDLRFASAVVHQEGLAAVFGN----------G-LS-TACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 297 (574)
Q Consensus 230 ~~~r~~~eilFE~~~~~~v~~~~~svla~ya~----------G-~~-tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~G 297 (574)
..++.+.+ +|+..|+.-..+..++++..-+. . .. +.++||+|+..|+++-+.+|.++. ...+++|
T Consensus 143 ~~v~~~~~-~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~G 219 (348)
T TIGR01175 143 EVVDSRLH-ALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVPFG 219 (348)
T ss_pred HHHHHHHH-HHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEeech
Confidence 34445655 47888888777777776654322 1 12 489999999999999999999884 5679999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHhc
Q 008184 298 GEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESY 339 (574)
Q Consensus 298 G~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~ 339 (574)
|+++|+.+.+.+. .+++-++++|.+.
T Consensus 220 ~~~i~~~i~~~~~----------------~~~~~Ae~~k~~~ 245 (348)
T TIGR01175 220 TRQLTSELSRAYG----------------LNPEEAGEAKQQG 245 (348)
T ss_pred HHHHHHHHHHHcC----------------CCHHHHHHHHhcC
Confidence 9999998875431 2456688888643
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.55 E-value=0.00043 Score=72.86 Aligned_cols=128 Identities=19% Similarity=0.340 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCC---C--------CChHH-HHHHHHHHHHhcCCCeEEEehhhHH--
Q 008184 191 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPE---S--------FDNRE-IKEMLSIVLRDLRFASAVVHQEGLA-- 256 (574)
Q Consensus 191 ~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~---~--------~~~~~-~r~~~eilFE~~~~~~v~~~~~svl-- 256 (574)
..++++....+-..+++.++.++... --.++-+. . -.++. +...++ +|+..|..-..+-.++.+
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~-D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~-~~~~aGL~~~~vDv~~~Al~ 163 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVF-DYQVLGESEDGEEKMEVLLVAAPKEIVESYVE-LFEEAGLKPVAVDVEAFALA 163 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEE-EEEESS-GS-TTSEEEEEEEEEEHHHHHHHHH-HHHHTT-EEEEEEEHHHHGG
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEE-EEEEeccCCCCCCceEEEEEEEcHHHHHHHHH-HHHHcCCceEEEeehHHHHH
Confidence 45678888888877887776655421 01111111 0 01333 333444 678889877666554444
Q ss_pred HHhhcC---------CceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 008184 257 AVFGNG---------LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAM 327 (574)
Q Consensus 257 a~ya~G---------~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~ 327 (574)
-+|... ..+-++||+|+..|+++-+.+|.++ -.+.+++||+++|+.+.+.+. .
T Consensus 164 r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~~----------------i 225 (340)
T PF11104_consen 164 RLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIARELG----------------I 225 (340)
T ss_dssp GGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhcC----------------C
Confidence 344331 1346999999999999999999988 345689999999999986532 2
Q ss_pred cHHHHHHHHHh
Q 008184 328 DLLMLNRIKES 338 (574)
Q Consensus 328 d~~l~e~lKe~ 338 (574)
+..-++++|..
T Consensus 226 ~~~~Ae~~k~~ 236 (340)
T PF11104_consen 226 DFEEAEELKRS 236 (340)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 44567777764
No 46
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.39 E-value=0.00099 Score=70.22 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=58.4
Q ss_pred cCCCeEEEehhhHHHHhhcCC-------------ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHH
Q 008184 243 LRFASAVVHQEGLAAVFGNGL-------------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 309 (574)
Q Consensus 243 ~~~~~v~~~~~svla~ya~G~-------------~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL 309 (574)
..+..+.+.+|++.|+|.... ...+|||||+.+|.++-+.+|.+.......++.|+.++-+.+.+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 456789999999999876532 2459999999999999999999988877889999999999999888
Q ss_pred Hh
Q 008184 310 RH 311 (574)
Q Consensus 310 ~~ 311 (574)
+.
T Consensus 231 ~~ 232 (344)
T PRK13917 231 SK 232 (344)
T ss_pred Hh
Confidence 53
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=96.89 E-value=0.0044 Score=64.71 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCC--hHHHHHHHHHHHHh--------cCCCeEEEehhhHHHHhhc-
Q 008184 193 EDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFD--NREIKEMLSIVLRD--------LRFASAVVHQEGLAAVFGN- 261 (574)
Q Consensus 193 dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~--~~~~r~~~eilFE~--------~~~~~v~~~~~svla~ya~- 261 (574)
++...++.+++.. .+.+ +- ..|++==|.+ ..+.+++.+.+... +.+..+.+.+|++.|.|..
T Consensus 84 ~~~~~L~~~Al~~-~~~~--~~----~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~ 156 (320)
T TIGR03739 84 PEYMALLRGALAL-SKVR--EI----DQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFV 156 (320)
T ss_pred HHHHHHHHHHHHH-hcCC--CC----CEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHH
Confidence 4567788888742 2322 11 1233322222 22222355555432 5778899999999987754
Q ss_pred --------CCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhc
Q 008184 262 --------GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHH 312 (574)
Q Consensus 262 --------G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~ 312 (574)
.....+|||||+.+|.++-+.++.+.......++.|..++.+.+.+.+..+
T Consensus 157 ~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 157 AQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred hcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 234579999999999998887787877777788999999999999888654
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.47 E-value=0.21 Score=51.33 Aligned_cols=116 Identities=16% Similarity=0.236 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCC-----------ChHHHHHHHHHHHHhcCCCeEEEehhhHHH--
Q 008184 191 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESF-----------DNREIKEMLSIVLRDLRFASAVVHQEGLAA-- 257 (574)
Q Consensus 191 ~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~-----------~~~~~r~~~eilFE~~~~~~v~~~~~svla-- 257 (574)
+-++++...++-...++..+.+|-. +--.++.+... +++++-+...-.||.-|+....+=.++.+.
T Consensus 99 de~eL~~~V~~ea~~y~PyP~EEv~-lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~r 177 (354)
T COG4972 99 DEKELEDQVESEASRYIPYPLEEVN-LDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVLDVESFALLR 177 (354)
T ss_pred cHHHHHHHHHHHHhhcCCCchhhcc-cceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEEehHHHHHHH
Confidence 4556666666666555554433321 11133333322 234433344457788888777766666554
Q ss_pred Hhh-----cCC-ce---EEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHH
Q 008184 258 VFG-----NGL-ST---ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQ 309 (574)
Q Consensus 258 ~ya-----~G~-~t---glVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL 309 (574)
+|. .|. +. ..|+|||+..|.++-+.+|.++. .+..++||+++|..+.+..
T Consensus 178 a~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly--~r~~~~g~~Qlt~~i~r~~ 236 (354)
T COG4972 178 AYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY--TREVPVGTDQLTQEIQRAY 236 (354)
T ss_pred HHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee--EeeccCcHHHHHHHHHHHh
Confidence 232 122 22 45999999999999999999984 4679999999999988653
No 49
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.041 Score=57.41 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=59.1
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC------ceEEEEEeCCCceEEE--EeeCCeec-cC
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------STACVVNMGAQVTSVI--CVEDGVAL-PN 289 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~------~tglVVDiG~~~T~V~--pV~dG~vl-~~ 289 (574)
+|+-+|..|+..+.+ .+.=.=---|..-+-+++++.+|+.|+|+ .+-+|.|.|.++-.|+ -|.+|..- ..
T Consensus 175 AVvTvPAYFNDAQrQ-ATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVla 253 (663)
T KOG0100|consen 175 AVVTVPAYFNDAQRQ-ATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLA 253 (663)
T ss_pred eEEecchhcchHHHh-hhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEe
Confidence 687788778766533 22211122356678899999999888875 5789999999987655 55677521 12
Q ss_pred CceeecccHHHHHHHHHH
Q 008184 290 TEKTLPFGGEDISRCLLW 307 (574)
Q Consensus 290 s~~~l~~GG~~it~~L~~ 307 (574)
+---..+||.|.++..++
T Consensus 254 TnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 254 TNGDTHLGGEDFDQRVME 271 (663)
T ss_pred cCCCcccCccchHHHHHH
Confidence 233468999998875543
No 50
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.075 Score=59.27 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=66.3
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC-------ceEEEEEeCCCceEEEEee--CCe-ecc
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL-------STACVVNMGAQVTSVICVE--DGV-ALP 288 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~-------~tglVVDiG~~~T~V~pV~--dG~-vl~ 288 (574)
+|+-+|..|+..+ |..++-.-...|++.+-++.++.+|+.++|. .+-||.|.|++...|+.+. +|. .+.
T Consensus 146 aviTVPa~F~~~Q-r~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vk 224 (620)
T KOG0101|consen 146 AVVTVPAYFNDSQ-RAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVK 224 (620)
T ss_pred EEEEecCCcCHHH-HHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhh
Confidence 5666777777665 3456666667788999999999999988874 3459999999999888873 453 233
Q ss_pred CCceeecccHHHHHHHHHHH
Q 008184 289 NTEKTLPFGGEDISRCLLWT 308 (574)
Q Consensus 289 ~s~~~l~~GG~~it~~L~~l 308 (574)
...--.++||.++++.|...
T Consensus 225 at~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 225 ATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred hhcccccccchhhhHHHHHH
Confidence 34445789999998877653
No 51
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.45 E-value=0.0062 Score=57.81 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=58.3
Q ss_pred HHHhcCCCeEEEehhhHHHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHH
Q 008184 239 VLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 306 (574)
Q Consensus 239 lFE~~~~~~v~~~~~svla~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~ 306 (574)
.+|.-|...++++.++.++++-.+...|.|||+|.++|-|+-|-+|.++..+ --+-||.++|-.|.
T Consensus 115 ViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLvlA 180 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLVLA 180 (277)
T ss_pred eecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEEEe
Confidence 4688999999999999999999999999999999999999999999998654 35788888876554
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=95.45 E-value=0.025 Score=60.96 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHH---HHhcCCCeEEEehhhHHHHhhcCC----
Q 008184 191 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIV---LRDLRFASAVVHQEGLAAVFGNGL---- 263 (574)
Q Consensus 191 ~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eil---FE~~~~~~v~~~~~svla~ya~G~---- 263 (574)
|-+.++.|.+.-| +.-++.|++-.. ..++|+-..-..+..++.++-+ ...|=|...-+-.+++++.+|+|.
T Consensus 64 D~~~i~~~V~~ey-~~Agi~~~die~-~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLs 141 (475)
T PRK10719 64 DEAAIKELIEEEY-QKAGIAPESIDS-GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 141 (475)
T ss_pred cHHHHHHHHHHHH-HHcCCCHHHccc-cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhh
Confidence 7889999999988 677888765321 1455554433333333433321 111212222233445555555552
Q ss_pred ----ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHH
Q 008184 264 ----STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 304 (574)
Q Consensus 264 ----~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~ 304 (574)
...++||||+++|+++-+.+|.++.. ..+++||++||.-
T Consensus 142 eEke~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D 184 (475)
T PRK10719 142 EERNTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETD 184 (475)
T ss_pred hhccCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEEC
Confidence 56899999999999999999998844 4699999999873
No 53
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.65 Score=52.42 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=64.8
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC----------ceEEEEEeCCCceEEEEeeC----C
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----------STACVVNMGAQVTSVICVED----G 284 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~----------~tglVVDiG~~~T~V~pV~d----G 284 (574)
.|+-+|+.|+..+.|-+++ .-+-.|..-++++.+..+++..+|. +.-+|-|+|+++|+++-|.- +
T Consensus 161 ~ViTVP~~F~qaeR~all~-Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~ 239 (902)
T KOG0104|consen 161 MVITVPPFFNQAERRALLQ-AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKT 239 (902)
T ss_pred eEEeCCcccCHHHHHHHHH-HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeecc
Confidence 4777888888777554444 2344578889999999999877664 35799999999999998842 1
Q ss_pred eecc---CCce------eecccHHHHHHHHHHHHHh
Q 008184 285 VALP---NTEK------TLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 285 ~vl~---~s~~------~l~~GG~~it~~L~~lL~~ 311 (574)
.-.. ..++ ...+||..+|..|...|..
T Consensus 240 k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 240 KEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 1111 1111 3467899999999887654
No 54
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=92.45 E-value=0.44 Score=47.73 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHH----HhhcCCceE
Q 008184 191 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAA----VFGNGLSTA 266 (574)
Q Consensus 191 ~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla----~ya~G~~tg 266 (574)
.|+...+.+..++ +++++++.+.. .|.+| .+-+. ++ .|- + ..+.|-++- .+-... ..
T Consensus 33 ~~~~~~~~l~~~~-~~~~~~~~~i~---~i~~T--g~~~~----~v--~~~--~----~~~~ei~~~~~g~~~~~~~-~~ 93 (248)
T TIGR00241 33 VIEETARAILEAL-KEAGIGLEPID---KIVAT--GYGRH----KV--GFA--D----KIVTEISCHGKGANYLAPE-AR 93 (248)
T ss_pred CHHHHHHHHHHHH-HHcCCChhhee---EEEEE--CCCcc----cc--ccc--C----CceEEhhHHHHHHHHHCCC-CC
Confidence 7888888888888 56677655442 33333 11111 11 111 1 123344443 333333 34
Q ss_pred EEEEeCCCceEEEEeeCCeeccCCc-eeecccHHHHHHHHHHHH
Q 008184 267 CVVNMGAQVTSVICVEDGVALPNTE-KTLPFGGEDISRCLLWTQ 309 (574)
Q Consensus 267 lVVDiG~~~T~V~pV~dG~vl~~s~-~~l~~GG~~it~~L~~lL 309 (574)
.|||||++.|.++-+.+|.+..-.. ..+..|+...++.+.+.|
T Consensus 94 ~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 94 GVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred EEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHc
Confidence 5999999999999999998763222 236778777777776554
No 55
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=5.6 Score=44.88 Aligned_cols=92 Identities=16% Similarity=0.266 Sum_probs=68.3
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCC------------ceEEEEEeCCCceEEEEe--eCC
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGL------------STACVVNMGAQVTSVICV--EDG 284 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~------------~tglVVDiG~~~T~V~pV--~dG 284 (574)
||+-+|..|+..+.|-+++.. .-.|+.-+-++.+-.+++.++|. .+-+.||+||+.++|+-+ --|
T Consensus 140 cvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG 218 (727)
T KOG0103|consen 140 CVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKG 218 (727)
T ss_pred eeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccC
Confidence 677788888888766666643 56799999999999999888874 236889999999988765 234
Q ss_pred eec-cCCceeecccHHHHHHHHHHHHHh
Q 008184 285 VAL-PNTEKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 285 ~vl-~~s~~~l~~GG~~it~~L~~lL~~ 311 (574)
..- -.+..--.+||++.++.|.+....
T Consensus 219 ~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 219 KLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred cceeeeeecccccccchHHHHHHHHHHH
Confidence 422 223334479999999999887654
No 56
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=91.46 E-value=0.27 Score=51.22 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=51.3
Q ss_pred hcCCCeEEEehhhHHHHhhc-----CCceEEEEEeCCCceEEEEeeCCeec-cCCceeecccHHHHHHHHHHHHHh
Q 008184 242 DLRFASAVVHQEGLAAVFGN-----GLSTACVVNMGAQVTSVICVEDGVAL-PNTEKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 242 ~~~~~~v~~~~~svla~ya~-----G~~tglVVDiG~~~T~V~pV~dG~vl-~~s~~~l~~GG~~it~~L~~lL~~ 311 (574)
.+.+..+.+.+|++.|.|.. ...+.+|||||+.+|.++-|..+... ..+....+.|-..+.+.+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 44578999999999998874 23578999999999999988776543 333445689999999999988765
No 57
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=90.13 E-value=1.3 Score=48.05 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=82.7
Q ss_pred EecceecCeeeecCCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEE
Q 008184 171 IHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVV 250 (574)
Q Consensus 171 l~~Pi~~G~i~~~~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~ 250 (574)
...|+...... |-+.+++|.+.-| +.-++.|++-. --+|++|-..-.+..-+++++.|=+..|==-|.-
T Consensus 50 ~fTPl~~~~~I---------D~~al~~iv~~eY-~~Agi~p~~I~-TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVAT 118 (473)
T PF06277_consen 50 YFTPLLSQTEI---------DAEALKEIVEEEY-RKAGITPEDID-TGAVIITGETARKENAREVLHALSGFAGDFVVAT 118 (473)
T ss_pred cccCCCCCCcc---------CHHHHHHHHHHHH-HHcCCCHHHCc-cccEEEecchhhhhhHHHHHHHHHHhcCCEEEEc
Confidence 34577753333 7899999999998 67888886532 1278888655444444467777766555211111
Q ss_pred ---ehhhHHHHhhcCC--------ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHH
Q 008184 251 ---HQEGLAAVFGNGL--------STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 301 (574)
Q Consensus 251 ---~~~svla~ya~G~--------~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~i 301 (574)
--||++|..|+|. .+-+=+|||.++|.++-..+|.++..+ .+++||+.|
T Consensus 119 AGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~--cl~IGGRLi 178 (473)
T PF06277_consen 119 AGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTA--CLDIGGRLI 178 (473)
T ss_pred cCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEEE--EEeeccEEE
Confidence 2588999999984 344558999999999999999999554 599999854
No 58
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=87.52 E-value=4.1 Score=41.22 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCeEEEehhhHHHHhhcCC----ce-EEEEEeCCCceEEEEee-CCeeccCCceeecccHHHHHHHHH
Q 008184 233 KEMLSIVLRDLRFASAVVHQEGLAAVFGNGL----ST-ACVVNMGAQVTSVICVE-DGVALPNTEKTLPFGGEDISRCLL 306 (574)
Q Consensus 233 r~~~eilFE~~~~~~v~~~~~svla~ya~G~----~t-glVVDiG~~~T~V~pV~-dG~vl~~s~~~l~~GG~~it~~L~ 306 (574)
+++++.|=+++|++.-.-..++-+|..|+=. .. -.|+|+|+++|..+-+. +|.+. ...+-=+|+-+|-.+.
T Consensus 98 ~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~mVTmlI~ 174 (332)
T PF08841_consen 98 QMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGNMVTMLIN 174 (332)
T ss_dssp HHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHHHHHHHHH
T ss_pred HHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCchhhHHHHH
Confidence 3688888999999999999999999998743 33 46899999999988885 45443 3456677899998887
Q ss_pred HHHHhcCCCCCcccccccccccHHHHHHHHHh
Q 008184 307 WTQRHHQTWPQIRTDILTKAMDLLMLNRIKES 338 (574)
Q Consensus 307 ~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~ 338 (574)
.-| + + .|+.++|+||..
T Consensus 175 sEL---G---------l---~d~~lAE~IKky 191 (332)
T PF08841_consen 175 SEL---G---------L---EDRELAEDIKKY 191 (332)
T ss_dssp HHC---T-------------S-HHHHHHHHHS
T ss_pred Hhh---C---------C---CCHHHHHHhhhc
Confidence 654 2 1 368899999985
No 59
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=86.28 E-value=3.2 Score=36.59 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=40.0
Q ss_pred EEEEeCCCceEEEEeeCCeeccCCceeeccc--------HHHHH--HHHHHHHHhcCCCCCcccccccccccHHHHHHH-
Q 008184 267 CVVNMGAQVTSVICVEDGVALPNTEKTLPFG--------GEDIS--RCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRI- 335 (574)
Q Consensus 267 lVVDiG~~~T~V~pV~dG~vl~~s~~~l~~G--------G~~it--~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~l- 335 (574)
++||+|+++|.++-..+|.... ..-+++| |.+|| +.+.+-++. ....+|++
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~----------------a~~~AE~~~ 63 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI----------------AIEEAERLA 63 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT------------------HHHHHHH-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH----------------HHHHHHHHh
Confidence 7899999999999988877664 5679999 99999 778766643 13457777
Q ss_pred HHhceec
Q 008184 336 KESYCEI 342 (574)
Q Consensus 336 Ke~~c~v 342 (574)
|.++..+
T Consensus 64 k~~i~~v 70 (120)
T PF14450_consen 64 KCEIGSV 70 (120)
T ss_dssp HHHH--S
T ss_pred CCeeeEE
Confidence 7776544
No 60
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=85.84 E-value=1.6 Score=44.65 Aligned_cols=71 Identities=18% Similarity=0.384 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCeEEEe--hhhHHHHhh----c-CCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHH
Q 008184 234 EMLSIVLRDLRFASAVVH--QEGLAAVFG----N-GLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 306 (574)
Q Consensus 234 ~~~eilFE~~~~~~v~~~--~~svla~ya----~-G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~ 306 (574)
.+++-+.+..|++--.+. .++-++..| . ...+++|||+|.++|.++.+.+|.+. ....+++|.-.+++.+.
T Consensus 75 ~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~~~ 152 (285)
T PF02541_consen 75 EFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FSQSLPLGAVRLTERFF 152 (285)
T ss_dssp HHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EEEEES--HHHHHHHHS
T ss_pred HHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--EeeeeehHHHHHHHHHh
Confidence 478888888887633332 233333322 2 56789999999999999999999987 45679999998888764
No 61
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=85.36 E-value=1 Score=46.28 Aligned_cols=32 Identities=34% Similarity=0.434 Sum_probs=23.2
Q ss_pred HHh-hcCCceEEEEEeCCCceEEEEeeCCeecc
Q 008184 257 AVF-GNGLSTACVVNMGAQVTSVICVEDGVALP 288 (574)
Q Consensus 257 a~y-a~G~~tglVVDiG~~~T~V~pV~dG~vl~ 288 (574)
++| ..|..++++||||.++|.|++|.||.+..
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 344 45888999999999999999999999863
No 62
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=81.19 E-value=9.9 Score=39.58 Aligned_cols=91 Identities=21% Similarity=0.328 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcccceeeecCC---CCChHH--HHHHHHHHHHhcCCCeEEEehhh-------------
Q 008184 193 EDLYAIWDWILTEKLHIPRSERNLYSAILVLPE---SFDNRE--IKEMLSIVLRDLRFASAVVHQEG------------- 254 (574)
Q Consensus 193 dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~---~~~~~~--~r~~~eilFE~~~~~~v~~~~~s------------- 254 (574)
+.+...+..++. .++.. ..+ .|.||-. .|..+. ++.+++.+-+.|+-+-.++....
T Consensus 36 ~~L~~~l~~~~~-~~~~~-~~~----avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv 109 (318)
T TIGR03123 36 DKLAETLKEISQ-DLSSA-DNV----AVTMTGELADCFEDKAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPL 109 (318)
T ss_pred hHHHHHHHHHHH-hcCcc-ceE----EEEeehhhhhhhcCHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHH
Confidence 445566666663 44321 334 7887754 454443 55677777788865432222111
Q ss_pred -------HH--HHhhcCCceEEEEEeCCCceEEEEeeCCeeccC
Q 008184 255 -------LA--AVFGNGLSTACVVNMGAQVTSVICVEDGVALPN 289 (574)
Q Consensus 255 -------vl--a~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~ 289 (574)
++ +..+.....+++||||.++|.|+||.+|.+...
T Consensus 110 ~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 110 DVAAANWLATAQLIAKRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred HHHHhhHHHHHHHHHhcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 11 122334678999999999999999999998743
No 63
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=72.70 E-value=14 Score=38.14 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=55.3
Q ss_pred eeecCCCCChHHHHHHHHHHHHhcCCCeEEEe---hhhHHHHhhc----CCceEEEEEeCCCceEEEEeeCCeeccCCce
Q 008184 220 ILVLPESFDNREIKEMLSIVLRDLRFASAVVH---QEGLAAVFGN----GLSTACVVNMGAQVTSVICVEDGVALPNTEK 292 (574)
Q Consensus 220 VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~---~~svla~ya~----G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~ 292 (574)
++-|...-+-....++++.+.+..|++ +-++ +++.++..|+ ...+++|||+|.++|.++.+.+|.+. ...
T Consensus 75 ~vaTsa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~ 151 (300)
T TIGR03706 75 AVATAALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGV 151 (300)
T ss_pred EEEcHHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEE
Confidence 444544432111125788888777764 3444 4444443332 22457999999999999999988776 456
Q ss_pred eecccHHHHHHHHH
Q 008184 293 TLPFGGEDISRCLL 306 (574)
Q Consensus 293 ~l~~GG~~it~~L~ 306 (574)
.+++|.-.+++.+.
T Consensus 152 Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 152 SLPLGCVRLTEQFF 165 (300)
T ss_pred EEccceEEhHHhhC
Confidence 89999988888764
No 64
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=70.44 E-value=1.7 Score=43.87 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHcCCChhHHH-HHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceee
Q 008184 450 IGLAEAVTSSILSTGRIDLQR-KLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 528 (574)
Q Consensus 450 ~gL~e~I~~sI~~~~~~d~r~-~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSI 528 (574)
.||.++|.+-+.+. -.|- ..-.+|+++||.++-+|+.+.|+++|... . . .+.+.. +.+|++..=+||++
T Consensus 191 aGl~~sia~r~~~~---~~~~~~~~~~v~~~GGva~n~~~~~~le~~l~~~-~--~---~~~v~~-~~~~q~~gAlGAAl 260 (262)
T TIGR02261 191 KGIHESMADRLAKL---LKSLGALDGTVLCTGGLALDAGLLEALKDAIQEA-K--M---AVAAEN-HPDAIYAGAIGAAL 260 (262)
T ss_pred HHHHHHHHHHHHHH---HhccCCCCCcEEEECcccccHHHHHHHHHHhccC-C--c---ceEecC-CCcchHHHHHHHHH
Confidence 35666666554321 0111 12246999999999999999999999532 1 0 233433 34788888888877
Q ss_pred ec
Q 008184 529 LG 530 (574)
Q Consensus 529 la 530 (574)
++
T Consensus 261 ~~ 262 (262)
T TIGR02261 261 WG 262 (262)
T ss_pred cC
Confidence 64
No 65
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=69.90 E-value=21 Score=39.68 Aligned_cols=69 Identities=19% Similarity=0.124 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCeEEEe---hhhHHHHhhc--C---CceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHH
Q 008184 234 EMLSIVLRDLRFASAVVH---QEGLAAVFGN--G---LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL 305 (574)
Q Consensus 234 ~~~eilFE~~~~~~v~~~---~~svla~ya~--G---~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L 305 (574)
++++-+.+..|++ |-++ +++-++..|. + ...++|||||+++|.++.+.+|.+. ....+++|.--+++.+
T Consensus 95 ~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 95 EFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SLFSLSMGCVTWLERY 171 (496)
T ss_pred HHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--eeeEEeccchHHHHHh
Confidence 5788888888876 3333 4444444332 1 1358999999999999999988876 4567999998877654
No 66
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=69.48 E-value=1.3 Score=45.49 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeee
Q 008184 450 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 529 (574)
Q Consensus 450 ~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIl 529 (574)
.||+++|.+-+... --|..+-..|+++||.++-+|+...|+++|.. +|.++ +.+|++..=+||+++
T Consensus 220 aGl~~sia~rv~~~---~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg~---------~v~~~--p~~p~~~GAlGAAL~ 285 (293)
T TIGR03192 220 AAYCQAMAERVVSL---LERIGVEEGFFITGGIAKNPGVVKRIERILGI---------KAVDT--KIDSQIAGALGAALF 285 (293)
T ss_pred HHHHHHHHHHHHHH---hcccCCCCCEEEECcccccHHHHHHHHHHhCC---------CceeC--CCCccHHHHHHHHHH
Confidence 35666665544322 11234556799999999999999999999852 22323 346889999999988
Q ss_pred cc
Q 008184 530 GI 531 (574)
Q Consensus 530 a~ 531 (574)
|.
T Consensus 286 A~ 287 (293)
T TIGR03192 286 GY 287 (293)
T ss_pred HH
Confidence 73
No 67
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=68.40 E-value=2.2 Score=45.40 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=40.0
Q ss_pred HHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeec
Q 008184 471 KLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 530 (574)
Q Consensus 471 ~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla 530 (574)
.+-..|+++||.++-+||...|++.|....+.. +|.+ |.+|++..=+||+++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~----~V~V---p~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYGEV----QINI---DPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccCCC----eEec---CCCccHHHHHHHHHhC
Confidence 345689999999999999999999996543311 3344 3478898888988765
No 68
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=65.99 E-value=4.1 Score=40.67 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCceEEEEeeCCee
Q 008184 264 STACVVNMGAQVTSVICVEDGVA 286 (574)
Q Consensus 264 ~tglVVDiG~~~T~V~pV~dG~v 286 (574)
.+++.||+|..+|.|+||.+|.+
T Consensus 130 dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 130 DSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred CceEEEecCCcccceEeecchhh
Confidence 57999999999999999999973
No 69
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=64.92 E-value=1.9 Score=46.14 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeee
Q 008184 450 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVL 529 (574)
Q Consensus 450 ~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIl 529 (574)
.||..+|.+-+... .-.+..+-+.|+++||.++.+|+...|++.|.. +|.++ .+|++..=+||+++
T Consensus 335 AGl~~SIa~rv~~~--l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg~---------~iivP---e~pq~~GAiGAAL~ 400 (404)
T TIGR03286 335 AAACHSVAEQVYEQ--QLQEIDVREPVILVGGTSLIEGLVKALGDLLGI---------EVVVP---EYSQYIGAVGAALL 400 (404)
T ss_pred HHHHHHHHHHHHHH--HhhcCCCCCcEEEECChhhhHHHHHHHHHHhCC---------cEEEC---CcccHHHHHHHHHH
Confidence 35666665555420 011223445699999999999999999999842 34443 47889999999988
Q ss_pred cc
Q 008184 530 GI 531 (574)
Q Consensus 530 a~ 531 (574)
|+
T Consensus 401 A~ 402 (404)
T TIGR03286 401 AS 402 (404)
T ss_pred hc
Confidence 74
No 70
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=62.69 E-value=63 Score=35.90 Aligned_cols=92 Identities=23% Similarity=0.312 Sum_probs=64.9
Q ss_pred eeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCCc-----eEEEEEeCCCceEEE--EeeCCeeccC-C
Q 008184 219 AILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLS-----TACVVNMGAQVTSVI--CVEDGVALPN-T 290 (574)
Q Consensus 219 ~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~~-----tglVVDiG~~~T~V~--pV~dG~vl~~-s 290 (574)
.|+-+|..|+-.+ |+.+.=+..-.|-..+-+++++.+|+.++|.. +-.|-|+|.++..|+ =|++|...-. +
T Consensus 163 avvtvpAyfndsq-RqaTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksT 241 (640)
T KOG0102|consen 163 AVITVPAYFNDSQ-RQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKST 241 (640)
T ss_pred eeeccHHHHhHHH-HHHhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEec
Confidence 3554555555444 45566566667778888999999999888863 457999999876554 4577875432 3
Q ss_pred ceeecccHHHHHHHHHHHHHh
Q 008184 291 EKTLPFGGEDISRCLLWTQRH 311 (574)
Q Consensus 291 ~~~l~~GG~~it~~L~~lL~~ 311 (574)
-.-...||.|++.++..++-.
T Consensus 242 ngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 242 NGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred cCccccChhHHHHHHHHHHHH
Confidence 345788999999999877643
No 71
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=51.99 E-value=10 Score=41.87 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCeEEEe--hhhHHHHhhc----C-CceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHH
Q 008184 234 EMLSIVLRDLRFASAVVH--QEGLAAVFGN----G-LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLL 306 (574)
Q Consensus 234 ~~~eilFE~~~~~~v~~~--~~svla~ya~----G-~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~ 306 (574)
++...+-+.+|++-=.+. .|+-++.+|. + ...+||+|+|+++|.++=+.+..+. ....+++|.-.+|+.+.
T Consensus 92 eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~~~ 169 (492)
T COG0248 92 EFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTERFF 169 (492)
T ss_pred HHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeehhhc
Confidence 466666677787643333 3444444432 3 5679999999999999998766555 44567888766666543
No 72
>PRK10854 exopolyphosphatase; Provisional
Probab=51.40 E-value=54 Score=36.58 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCCeEEEe---hhhHHHHhhcC--C---ceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHH
Q 008184 234 EMLSIVLRDLRFASAVVH---QEGLAAVFGNG--L---STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRC 304 (574)
Q Consensus 234 ~~~eilFE~~~~~~v~~~---~~svla~ya~G--~---~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~ 304 (574)
++++-+.+..|++ +-++ +++-++..|.- . ..++|||||+++|.++-+.+|.+.. ...+++|.--+++.
T Consensus 100 ~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~lG~vrl~e~ 175 (513)
T PRK10854 100 DFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSFAQL 175 (513)
T ss_pred HHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--eEEEecceeeHHhh
Confidence 5788888888876 3333 44444444331 1 3589999999999999999986553 34468887777763
No 73
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=50.34 E-value=33 Score=34.47 Aligned_cols=47 Identities=34% Similarity=0.365 Sum_probs=38.0
Q ss_pred HHhcCCCeEEEehhhHHHHhhcC-------CceEEEEEeCCCceEEEEeeCCeec
Q 008184 240 LRDLRFASAVVHQEGLAAVFGNG-------LSTACVVNMGAQVTSVICVEDGVAL 287 (574)
Q Consensus 240 FE~~~~~~v~~~~~svla~ya~G-------~~tglVVDiG~~~T~V~pV~dG~vl 287 (574)
....+... +++....+|.+|+- ....||||+|-+.|-.+-|.+|.+.
T Consensus 137 ~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 137 LGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred hccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 34444454 88899999988863 4678999999999999999999886
No 74
>PRK13317 pantothenate kinase; Provisional
Probab=48.41 E-value=7.5 Score=39.71 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHcCCChhHHHHHhcCeEEEc-CCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceee
Q 008184 450 IGLAEAVTSSILSTGRIDLQRKLFCSIQLIG-GVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 528 (574)
Q Consensus 450 ~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~G-G~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSI 528 (574)
.+|..+|.+.|...+-.-.|..-.++|+++| |.+..|++.++|.+.+... .. ++.++ .+++|..=+||++
T Consensus 200 asl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~-~~~~p---~~~~~~gAlGAaL 270 (277)
T PRK13317 200 AGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR-----NC-TPIFL---ENGGYSGAIGALL 270 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC-----Cc-eEEec---CCCchhHHHHHHH
Confidence 4666677666654310112333348999999 6899999999999877521 11 33332 4678988899887
Q ss_pred ecc
Q 008184 529 LGI 531 (574)
Q Consensus 529 la~ 531 (574)
++.
T Consensus 271 ~a~ 273 (277)
T PRK13317 271 LAT 273 (277)
T ss_pred Hhh
Confidence 754
No 75
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=41.21 E-value=1.3e+02 Score=31.46 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=68.3
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHH---hcCCCeEEEehhhHHHHhhcCC----
Q 008184 191 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLR---DLRFASAVVHQEGLAAVFGNGL---- 263 (574)
Q Consensus 191 ~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE---~~~~~~v~~~~~svla~ya~G~---- 263 (574)
+-+.++.+...-| ..-++.|+.-. .-+|++|-..-.++.-+..+..|-. .|=+..---.-+|+.|--|+|.
T Consensus 63 d~~alk~~v~eeY-~~AGi~pesi~-sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~S 140 (473)
T COG4819 63 DEAALKKLVLEEY-QAAGIAPESID-SGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 140 (473)
T ss_pred cHHHHHHHHHHHH-HHcCCChhccc-cccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchh
Confidence 5777888887776 56788876532 1268887654433333333333322 2222222333567777777774
Q ss_pred ---ce-EEEEEeCCCceEEEEeeCCeeccCCceeecccHHHH
Q 008184 264 ---ST-ACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDI 301 (574)
Q Consensus 264 ---~t-glVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~i 301 (574)
.| -+=+|||.++|..+-..-|.++..+. +++||+-|
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLi 180 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLI 180 (473)
T ss_pred hhhceEEEEEeccCCccceeeeccccccccee--eecCcEEE
Confidence 22 23479999999999999999986654 99999865
No 76
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.42 E-value=28 Score=40.16 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=25.9
Q ss_pred HHhhcCCce--EEEEEeCCCceEEEEeeCCeecc
Q 008184 257 AVFGNGLST--ACVVNMGAQVTSVICVEDGVALP 288 (574)
Q Consensus 257 a~ya~G~~t--glVVDiG~~~T~V~pV~dG~vl~ 288 (574)
|+|=+|+.+ ++++|||.++|.|+-+.+|.+..
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 344447766 99999999999999999887653
No 77
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=39.59 E-value=9.7 Score=40.19 Aligned_cols=44 Identities=30% Similarity=0.350 Sum_probs=36.0
Q ss_pred eEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeecc
Q 008184 476 IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGI 531 (574)
Q Consensus 476 IvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~ 531 (574)
|+++||+++..|+..-|++.|.. +|.++ ..+++.--+||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg~---------~V~vP---~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLGR---------KVIVP---PYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhCC---------eeecC---CccchhhHHHHHHHHh
Confidence 99999999999999999999862 34443 4678888888888876
No 78
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=35.36 E-value=22 Score=37.74 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=20.3
Q ss_pred hcCeEEEcCCCCcCChHHHHHHHHhh
Q 008184 473 FCSIQLIGGVALTGGLIPAVEERVLH 498 (574)
Q Consensus 473 ~~NIvL~GG~S~ipGf~eRL~~eL~~ 498 (574)
-..|+|+||++.=+-|-+||+++|..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 45799999999999999999988854
No 79
>PRK03011 butyrate kinase; Provisional
Probab=31.27 E-value=27 Score=37.08 Aligned_cols=25 Identities=32% Similarity=0.679 Sum_probs=21.6
Q ss_pred CCeEEEcCCCceeeeecCCCCCCCc
Q 008184 18 SNLVVINPGSANIRIGLAQHDTPLN 42 (574)
Q Consensus 18 ~~~iVi~~GS~~lkiG~a~d~~P~~ 42 (574)
.+++||+|||.+.||++-.|..|+.
T Consensus 2 ~~il~inpgststk~a~~~~~~~~~ 26 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDEKPIF 26 (358)
T ss_pred CEEEEEcCCCchheEEEEcCCceee
Confidence 3689999999999999998887743
No 80
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.84 E-value=3.5e+02 Score=27.54 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=32.3
Q ss_pred EEEehhhHHHHhhcCC----ceEEEEEeCCCceEEEEeeCCeec
Q 008184 248 AVVHQEGLAAVFGNGL----STACVVNMGAQVTSVICVEDGVAL 287 (574)
Q Consensus 248 v~~~~~svla~ya~G~----~tglVVDiG~~~T~V~pV~dG~vl 287 (574)
.++...-.+|.+|+-. .-++|||+|.+.|...-|.++.+.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 5667777777777644 458999999999999999998764
No 81
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=24.48 E-value=60 Score=31.51 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=22.3
Q ss_pred hcCeEEEcCCCCcCChHHHHHHHHh
Q 008184 473 FCSIQLIGGVALTGGLIPAVEERVL 497 (574)
Q Consensus 473 ~~NIvL~GG~S~ipGf~eRL~~eL~ 497 (574)
...+.|+||.++.||+.+-++++|.
T Consensus 227 i~dl~lvGGac~~~g~e~~Fe~~l~ 251 (277)
T COG4820 227 ITDLWLVGGACMQPGVEELFEKQLA 251 (277)
T ss_pred CcceEEecccccCccHHHHHHHHhc
Confidence 3568899999999999999999994
No 82
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=22.90 E-value=7.5 Score=39.26 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCCcceEEEcCCCCCCceeeEeceeeec
Q 008184 452 LAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLG 530 (574)
Q Consensus 452 L~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~i~~V~v~~~~~d~~~~aW~GgSIla 530 (574)
|.+.|...+.+. ...... |+|+||...-..+.+.|.+.|....+.. ++.++. .|.+.+..||.+||
T Consensus 206 la~~i~~~~~~~-~~~~~~-----v~l~GGv~~~~~~~~~l~~~l~~~~~~~----~~~~~~---~~~~~~a~GAallA 271 (271)
T PF01869_consen 206 LAELIKAVLKRL-GPEKEP-----VVLSGGVFKNSPLVKALRDALKEKLPKV----PIIIPV---EPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHTC-TCCCCS-----EEEESGGGGCHHHHHHHGGGS-HHHHCC----TCECEC---CGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCCCe-----EEEECCccCchHHHHHHHHHHHHhcCCC----ceEECC---CCCccHHHHHHHhC
No 83
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=21.71 E-value=3.1e+02 Score=29.65 Aligned_cols=102 Identities=18% Similarity=0.079 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHHHHHHHHHHhcCCCeEEEehhhHH----HHhhcC--Cc
Q 008184 191 VLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLA----AVFGNG--LS 264 (574)
Q Consensus 191 ~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r~~~eilFE~~~~~~v~~~~~svl----a~ya~G--~~ 264 (574)
.-+..+++++.++ ++.+++..+.. .+.+| -+=|.++..+| +...+ +.+-.| |.|-.. ..
T Consensus 177 ~~~~a~~~l~~~l-~~~Gl~~~di~---~i~~T------GyGR~~i~~~~---~ad~i--v~EItaha~GA~~L~p~~~~ 241 (404)
T TIGR03286 177 VIESAEEAVERAL-EEAGVSLEDVE---AIGTT------GYGRFTIGEHF---GADLI--QEELTVNSKGAVYLADKQEG 241 (404)
T ss_pred HHHHHHHHHHHHH-HHcCCCcccee---EEEee------eecHHHHhhhc---CCCce--EEEEhhHHHHHHHhcccCCC
Confidence 4566788888888 56777655542 23333 22223333222 22222 222222 233222 24
Q ss_pred eEEEEEeCCCceEEEEeeCCeeccCCceeecc--cHHHHHHHHHH
Q 008184 265 TACVVNMGAQVTSVICVEDGVALPNTEKTLPF--GGEDISRCLLW 307 (574)
Q Consensus 265 tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~--GG~~it~~L~~ 307 (574)
...|+|||.+-+.++-+.+|.+..-..--.-- +|+.|...-..
T Consensus 242 v~TIIDIGGQDsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~ 286 (404)
T TIGR03286 242 PATVIDIGGMDNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKR 286 (404)
T ss_pred CcEEEEeCCCceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHH
Confidence 68999999999999999888764221111112 36666655443
No 84
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=21.65 E-value=44 Score=35.91 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCceEEEEeeCCeeccCCc
Q 008184 264 STACVVNMGAQVTSVICVEDGVALPNTE 291 (574)
Q Consensus 264 ~tglVVDiG~~~T~V~pV~dG~vl~~s~ 291 (574)
..-+|..+|.+ +|+|.+.+|.++.-+.
T Consensus 199 ~~lIvaHLG~G-~Sv~A~~~GrsvDtsm 225 (388)
T PF00871_consen 199 LNLIVAHLGSG-ASVCAIKNGRSVDTSM 225 (388)
T ss_dssp -EEEEEEESSS-EEEEEEETTEEEEESB
T ss_pred cCEEEEEeCCC-cEEEEEECCEEEEecC
Confidence 47899999998 7899999999986554
No 85
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=20.96 E-value=66 Score=34.26 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.3
Q ss_pred cCeEEEcCCCCcCChHHHHHHHHh
Q 008184 474 CSIQLIGGVALTGGLIPAVEERVL 497 (574)
Q Consensus 474 ~NIvL~GG~S~ipGf~eRL~~eL~ 497 (574)
+.|+|+||++.=|-|-+||+++|.
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l~ 311 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALLP 311 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhcC
Confidence 359999999999999999999883
No 86
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=20.92 E-value=87 Score=29.73 Aligned_cols=41 Identities=39% Similarity=0.486 Sum_probs=30.3
Q ss_pred CcccccCchhhHhhcCCCeEEEcCCCceeeeecCCCCCC-CccceeeeeecC
Q 008184 2 DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTP-LNIPHCIARRTS 52 (574)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~iVi~~GS~~lkiG~a~d~~P-~~iP~~ia~~~~ 52 (574)
|=||+-+|...+ -.+|||+|. .+|+| .+| +-||++=-.+.-
T Consensus 52 dGFkt~vPdeEi-----~~vVIDCGG-TlRCG----iYPkK~IpTINi~ptG 93 (183)
T PF03612_consen 52 DGFKTSVPDEEI-----ACVVIDCGG-TLRCG----IYPKKRIPTINIHPTG 93 (183)
T ss_pred CCccCCCChHHe-----EEEEEecCC-ceeec----cccccCCceeeeeeCC
Confidence 446777887765 479999995 79999 679 899966444443
Done!