Query 008185
Match_columns 574
No_of_seqs 273 out of 2092
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 20:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 5.5E-30 1.9E-34 273.1 26.8 369 113-499 26-412 (451)
2 4gc0_A D-xylose-proton symport 100.0 1.3E-27 4.4E-32 258.2 29.7 426 114-552 11-487 (491)
3 3o7q_A L-fucose-proton symport 100.0 8.5E-27 2.9E-31 247.7 30.8 351 113-498 24-409 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 8.3E-25 2.8E-29 236.3 26.2 365 120-495 18-447 (491)
5 2gfp_A EMRD, multidrug resista 99.9 4.8E-25 1.6E-29 229.7 14.1 347 120-498 5-354 (375)
6 2cfq_A Lactose permease; trans 99.9 7.1E-24 2.4E-28 225.1 2.0 364 134-531 27-403 (417)
7 2xut_A Proton/peptide symporte 99.8 1.4E-20 4.8E-25 205.0 17.2 155 134-295 32-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 3.9E-11 1.3E-15 127.0 15.8 178 114-297 252-433 (451)
9 2cfq_A Lactose permease; trans 99.0 3.5E-09 1.2E-13 111.6 13.1 159 137-304 243-407 (417)
10 3o7q_A L-fucose-proton symport 98.9 8.5E-09 2.9E-13 108.5 14.3 150 135-296 279-431 (438)
11 4aps_A DI-OR tripeptide H+ sym 98.7 2.2E-07 7.5E-12 99.4 18.1 131 358-499 36-175 (491)
12 2xut_A Proton/peptide symporte 98.6 1.2E-07 4.1E-12 102.5 11.3 133 357-499 34-177 (524)
13 2gfp_A EMRD, multidrug resista 98.6 1.1E-08 3.9E-13 105.5 2.8 153 362-533 26-180 (375)
14 4gc0_A D-xylose-proton symport 98.4 2.1E-06 7.1E-11 91.7 14.9 158 140-304 302-470 (491)
15 3iyz_A Aquaporin-4; water tran 42.4 2E+02 0.0067 28.5 11.4 23 394-416 123-147 (340)
16 2zz9_A Aquaporin-4; water tran 32.1 3.1E+02 0.011 26.5 10.8 25 504-528 205-229 (301)
17 3ukx_C Bimax2 peptide; arm rep 29.4 21 0.0007 20.5 1.1 12 90-101 13-24 (28)
18 2dnt_A Chromodomain protein, Y 21.4 29 0.001 26.4 1.0 23 76-98 21-43 (78)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=5.5e-30 Score=273.11 Aligned_cols=369 Identities=11% Similarity=-0.004 Sum_probs=258.4
Q ss_pred chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185 113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG 190 (574)
Q Consensus 113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~ 190 (574)
+|.....+++.++..++.. ......+ .+.+++ .+..+.+++.+++.++..+ .|++|+++||+ +||+.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-----CchHHHHHH
Confidence 5666666777777777665 4444444 456668 9999999999999998866 88999999995 577788888
Q ss_pred HHHHHHHHHHhhc----ccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHH
Q 008185 191 VFLQILSWGPLAL----FPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLF 266 (574)
Q Consensus 191 ~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~i 266 (574)
.++..++..++++ ..+ ++.++++|++.+++.+...+...+++.|..++++|++++++...+..+|.++||.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSS----IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSS----SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHhhhhcccc----HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877776 432 46678899999999998888889999999999999999999999999999999999
Q ss_pred HHHhhccCC-hhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhh---hh--hhhHHHHHHH--HHHHHcchhh
Q 008185 267 GGYFLLKTP-PTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASK---SI--AQSIKKQFSD--LIATIGEESI 337 (574)
Q Consensus 267 gg~l~~~~g-wr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~---~~--~~~~~~~~~~--~~~~~~~~~v 337 (574)
++++.+..| ||+.|++.+++.++..++. +++||++......+.++.+++ .. .+..+...++ .++.+++|.+
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL 254 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHH
Confidence 999888888 9999999998887766654 578887654321111000000 00 0000001111 2345677777
Q ss_pred HHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHH
Q 008185 338 SYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV--PLRKLVGAVQILYASSL 415 (574)
Q Consensus 338 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~--~~r~ll~~~~ll~~~~~ 415 (574)
+...+..++...........++.|..+.+|+++.+.|+......++.+++..+.+++.||+ ++|+.+..+.++.....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 7666555543333333334455667777999999999999999999999999999999998 88888776655544222
Q ss_pred hHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHh-HHHHHHHHHHHHH
Q 008185 416 LLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCL-SSIASGFLGVGLA 494 (574)
Q Consensus 416 l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~l-g~~lg~~i~g~l~ 494 (574)
++.+.+.. ..+.+.......+..........+...+..|.+|++.+|+++|+.+.+.++ |..++|.+.|.+.
T Consensus 335 ~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 335 TIVYWMNP-------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp HHHTTSCC-------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111110 001111111111111111222233357789999999999999999999999 9999999999999
Q ss_pred HhhCc
Q 008185 495 SLTGI 499 (574)
Q Consensus 495 ~~~g~ 499 (574)
+..|+
T Consensus 408 ~~~g~ 412 (451)
T 1pw4_A 408 DFFGW 412 (451)
T ss_dssp HSSCS
T ss_pred HhcCc
Confidence 97663
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=1.3e-27 Score=258.19 Aligned_cols=426 Identities=14% Similarity=0.064 Sum_probs=255.9
Q ss_pred hhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcC--------CChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCcc
Q 008185 114 KQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLS--------LHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHR 183 (574)
Q Consensus 114 ~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~--------~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rR 183 (574)
|.+.+..+++.+..|++. +...+++ .++++++ .+..+.+++.+.+.++..+ .+++|+++||+ +|
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-----GR 84 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-----GR 84 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHH-HHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-----CH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cC
Confidence 334444456677778776 5555554 3444453 2345678888889998888 55789999984 68
Q ss_pred chhHhHHHHHHHHHHHHhhcccC--------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchH
Q 008185 184 IPYICIGVFLQILSWGPLALFPV--------------AAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQ 249 (574)
Q Consensus 184 k~~l~i~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~ 249 (574)
|+.+.++.++..++.++.++... ...++++++++|+++|+|.+...+....++.|..|+++|+...
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 88888888877777776664211 0123678899999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--------CChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcch-----hh-
Q 008185 250 SYAFMAAASGGILGNLFGGYFLLK--------TPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVA-----SK- 315 (574)
Q Consensus 250 s~~~~~~~~G~~igp~igg~l~~~--------~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~-----~~- 315 (574)
++.+.+..+|.++++.++..+... .+||+.+.+.++..++..+..+++||++++...+++.+.+ +.
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 999999999999999888776542 3588888877776666666677899998775432221111 00
Q ss_pred --hh-hh---hHHHHHHH------HHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHH
Q 008185 316 --SI-AQ---SIKKQFSD------LIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSM 383 (574)
Q Consensus 316 --~~-~~---~~~~~~~~------~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig 383 (574)
.. .+ ..++.... ....+..+..........+...........+..+..+..+.+........+...+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVI 324 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHH
Confidence 00 00 00000000 01112222222222222111111111111111122344666666666666777777
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhh
Q 008185 384 LLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARL 462 (574)
Q Consensus 384 ~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~ 462 (574)
.+++..+..++.+|+++|+.+..+..+..++.+........ ....+..+....+..........|. .++.+|+
T Consensus 325 ~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 398 (491)
T 4gc0_A 325 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 398 (491)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 88888888889999999998887766655544322111110 0111111111122222223334444 4678999
Q ss_pred cCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Q 008185 463 CPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGRKRG 542 (574)
Q Consensus 463 ~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp~~~~~~~~~~~~~ 542 (574)
+|.+.|+++.|+.+.+.++++.+++.+.+.+.+...... .+...+.+++++++..+..++.++++||||++++||.++-
T Consensus 399 fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 399 FPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 999999999999999999999998887766654322110 0111122233333333333444678999999999999888
Q ss_pred CCccCccccc
Q 008185 543 LSRRTRKNRR 552 (574)
Q Consensus 543 ~~~~~~~~~~ 552 (574)
++++.+|.++
T Consensus 478 f~~~~~~~~~ 487 (491)
T 4gc0_A 478 WEPETKKTQQ 487 (491)
T ss_dssp TC--------
T ss_pred hCCCCccccc
Confidence 7766654443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.96 E-value=8.5e-27 Score=247.65 Aligned_cols=351 Identities=13% Similarity=0.047 Sum_probs=249.2
Q ss_pred chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185 113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG 190 (574)
Q Consensus 113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~ 190 (574)
++..+..+++.++..++.. +.....+ .+++++|++..+.+++.+++.++..+ .|++|+++||+ +||+.++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~ 97 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITG 97 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-----CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchHHHHHH
Confidence 4445555667777777765 4444444 46777999999999999999998766 88999999995 577777778
Q ss_pred HHHHHHHHHHh---hcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHH
Q 008185 191 VFLQILSWGPL---ALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFG 267 (574)
Q Consensus 191 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~ig 267 (574)
.++..++..+. ...++ ++.++++|++.++|.+...+...+++.|..++++|+.++++...+..+|.++||.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMN----YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccc----HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777766 44332 677889999999999999988899999999999999999999999999999999999
Q ss_pred HHhh-ccCC-------------------------hhHHHHHHHHHHHHHHHHhhh--cccccccccccchhcchhhhhhh
Q 008185 268 GYFL-LKTP-------------------------PTTMFLVFAVLLSLQLAISFS--AREESLGLAQVSYQNVASKSIAQ 319 (574)
Q Consensus 268 g~l~-~~~g-------------------------wr~~f~i~ai~~~~~~~~~~~--lpEt~~~~~~~~~~~~~~~~~~~ 319 (574)
+++. +..+ ||+.|++.+++..+..++.++ .||++....+.+ + .+
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------~--~~ 245 (438)
T 3o7q_A 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA------K--QG 245 (438)
T ss_dssp THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS------S--TT
T ss_pred HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc------c--cc
Confidence 9998 5554 999999888777666555443 455443211100 0 01
Q ss_pred hHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceee-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008185 320 SIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCY-QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV 398 (574)
Q Consensus 320 ~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~ 398 (574)
..+ +..++.+++|.++...+..++............+.| ..+.+|+++.+.++......++.+++..+.+++.||+
T Consensus 246 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~ 322 (438)
T 3o7q_A 246 SFS---ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF 322 (438)
T ss_dssp SHH---HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chh---hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 233455788888776655544222222233334556 7777899999999998888999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHH-HHHHHHhhcCCChhHHHHHHHHH
Q 008185 399 PLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLP-FSMLLARLCPQGCEGSLTSFSAS 477 (574)
Q Consensus 399 ~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~ 477 (574)
++|+++..+.++..+..+.. ... ++.+. .....+. +++.....| ...+..|..|++ ++++.++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 388 (438)
T 3o7q_A 323 APHKVLAAYALIAMALCLIS-AFA---------GGHVG-LIALTLC-SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV- 388 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHC---------CHHHH-HHHHHHH-HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHHH-HHc---------CCcHH-HHHHHHH-HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence 99998887776655443321 111 11111 1111122 222222333 356668888866 888888776
Q ss_pred HHHhHHHHHHHHHHHHHHhhC
Q 008185 478 ALCLSSIASGFLGVGLASLTG 498 (574)
Q Consensus 478 ~~~lg~~lg~~i~g~l~~~~g 498 (574)
...+|..++|.+.|.+.+..|
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 677999999999999999887
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=8.3e-25 Score=236.33 Aligned_cols=365 Identities=13% Similarity=0.027 Sum_probs=219.9
Q ss_pred HHHHHHHhhhcc-chhhhhHHHHHHh-----cCCChhHHHHHHHHhhhhhhh-hhhheeeccc-cccCCCccchhHhHHH
Q 008185 120 CGLGYWVQGFRC-FPWLALNFHMAHN-----LSLHPSTLQLVQNSGNLPMVA-KPLYGILSDA-LYIGGAHRIPYICIGV 191 (574)
Q Consensus 120 ~~~~~f~~~~~~-~~~~~~~~~l~~~-----~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~-~~~~G~rRk~~l~i~~ 191 (574)
+.+..+...+.. ......+.+++++ +|++..+.+++.+++.++..+ .|++|+++|| + +||+.+.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----g~r~~~~~~~ 92 (491)
T 4aps_A 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-----GARPAVFWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHH
Confidence 333444444333 2333444566666 999999999999999998766 8889999998 5 5777777788
Q ss_pred HHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--ccchHHHHHHHHHHHHHHHHHHHHH
Q 008185 192 FLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNG--IVGLQSYAFMAAASGGILGNLFGGY 269 (574)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~--rg~~~s~~~~~~~~G~~igp~igg~ 269 (574)
++..++..+++..++ .+.++++|++.++|.+...+...+++.|..++++ |+.++++++.+..+|.++||.++++
T Consensus 93 ~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 168 (491)
T 4aps_A 93 VLIMLGHIVLALPFG----ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA 168 (491)
T ss_dssp HHHHHHHHHHHSCCS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH
Confidence 887887777766543 4567889999999999888888999999999887 6777787889999999999999999
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHhh-hcccccccccccchhcchhhhhhhhHHH-------------------------
Q 008185 270 FLLKTPPTTMFLVFAVLLSLQLAISF-SAREESLGLAQVSYQNVASKSIAQSIKK------------------------- 323 (574)
Q Consensus 270 l~~~~gwr~~f~i~ai~~~~~~~~~~-~lpEt~~~~~~~~~~~~~~~~~~~~~~~------------------------- 323 (574)
+.+..|||+.|++.++..++..++.+ ..|+...+..+..++..++++..+..+.
T Consensus 169 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 248 (491)
T 4aps_A 169 AQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPA 248 (491)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 99989999999998777666555443 2232211110000000000000000000
Q ss_pred -------------------HHHHHHH--HHcc--hhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHH
Q 008185 324 -------------------QFSDLIA--TIGE--ESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIG 380 (574)
Q Consensus 324 -------------------~~~~~~~--~~~~--~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~ 380 (574)
..++... ..++ ...+...+..++.+.........++.|..+..+.+....++.....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4aps_A 249 YINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLN 328 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHH
T ss_pred chhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccc
Confidence 0000000 0011 1112222222222222223333445566666777756666666666
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHH-----HHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHH-hhHHH
Q 008185 381 QSMLLSLTVFYDRYWKKVPLRKLVG-----AVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQ-FKLLP 454 (574)
Q Consensus 381 ~ig~lig~~l~~~l~~r~~~r~ll~-----~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~p 454 (574)
.++.+++..+.+++.+|+++|+... .+.++.+++.+... ...... ...............+..+++. ....+
T Consensus 329 ~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 406 (491)
T 4aps_A 329 PLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMA-IPGALY-GTSGKVSPLWLVGSWALVILGEMLISPV 406 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTH-HHHHHC-CCCTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH-HHHHhc-CCCCCccHHHHHHHHHHHHHHHHHHhHH
Confidence 7777777778888888888765433 34443333322211 111000 0000011111111222223332 32344
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185 455 FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS 495 (574)
Q Consensus 455 ~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~ 495 (574)
...+..|..|++.+|+++|+.+...++|..+++.+.+.+.+
T Consensus 407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788999999999999999999999999999998776654
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.92 E-value=4.8e-25 Score=229.74 Aligned_cols=347 Identities=16% Similarity=0.062 Sum_probs=235.8
Q ss_pred HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185 120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS 197 (574)
Q Consensus 120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~ 197 (574)
+++..+..++.. +..+..+ .+.+++|.++.+.+++.+++.++..+ .|++|+++||+ +||+.+.++.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIA-DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-----GRRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-----CCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHH
Confidence 444555555554 4444444 45777999999999999999998766 88999999985 4556666677777777
Q ss_pred HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 008185 198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPT 277 (574)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr 277 (574)
..+.+..+ +++.+++.|++.+++.+...+...+++.|..++++|++++++.+.+..+|.++||.+++++.+..|||
T Consensus 79 ~~~~~~~~----~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 79 TLVAVTTS----SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHhc----cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 77666653 25677888999999999888888999999999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHH-hhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccc
Q 008185 278 TMFLVFAVLLSLQLAI-SFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSG 356 (574)
Q Consensus 278 ~~f~i~ai~~~~~~~~-~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~ 356 (574)
+.|++.++..++..+. .+++||++.+..+++ +..+ +.++.+++|.++...+..++.+........
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPVDAPRT-------RLLT-------SYKTLFGNSGFNCYLLMLIGGLAGIAAFEA 220 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC-------CTTT-------CSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCCCcccc-------cHHH-------HHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999998887777664 356888764422110 0001 112234556665554444442333333334
Q ss_pred cceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceE
Q 008185 357 SMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVF 436 (574)
Q Consensus 357 ~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~ 436 (574)
..+.|..+.+|+++.+.|+......++.+++..+.+++.||.++ + ...+..+.....+..+....... .+.+.
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 293 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-L-MWQSVICCLLAGLLMWIPDWFGV-----MNVWT 293 (375)
T ss_dssp HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-H-HHHHHHHHHHTSSSSSHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHhhhcc-----ccHHH
Confidence 45666777789999999999999999999999999998888765 2 22222221111111111110000 01111
Q ss_pred EeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185 437 VLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG 498 (574)
Q Consensus 437 ~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g 498 (574)
......+.....+........+..|..| +.+|+++|+.+...++|..+++.+.|.+.+..+
T Consensus 294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 294 LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1111112221112223334567788888 899999999999999999999999988877644
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=7.1e-24 Score=225.06 Aligned_cols=364 Identities=12% Similarity=0.083 Sum_probs=199.7
Q ss_pred hhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH---HHHhhcccCccc
Q 008185 134 WLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS---WGPLALFPVAAK 209 (574)
Q Consensus 134 ~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~---~~~~~~~~~~~~ 209 (574)
.+.++.++++++|+++.+.+++.+.+.++..+ +|++|+++||+ +||+.++++..+..+. +.........
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-----Grr~~l~~~~~~~~~~~~~~~~~~~~~~~-- 99 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFFIFIFGPLL-- 99 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-----TTCCHHHHHHHHTTSCHHHHHHHTHHHHH--
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34455678888999999999999999888766 88999999995 4555554444432221 1111111000
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHH
Q 008185 210 ALPNLMACVLLSNL----GASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAV 285 (574)
Q Consensus 210 ~~~~l~~~~~l~~~----g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai 285 (574)
...++..+++.+. +.+........+..|.. ++++...+.......+|..+||.+++++.+ .+||+.|++.++
T Consensus 100 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~ 175 (417)
T 2cfq_A 100 -QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS--RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG 175 (417)
T ss_dssp -HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH--HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh--hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence 0001122332222 21111222233333331 345666776666778899999999999886 589999998876
Q ss_pred HHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccc
Q 008185 286 LLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQC 365 (574)
Q Consensus 286 ~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 365 (574)
..++..+..++.+|++.+..+.++++.+ +.... ..++.++.+++|.++...+..+........+...++.|+.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (417)
T 2cfq_A 176 CALILAVLLFFAKTDAPSSATVANAVGA-NHSAF----SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250 (417)
T ss_dssp TTTTHHHHSCSSCCCCSCSSCSSSSSSS-CCCCC----CHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCccccccccccccccc-ccccc----cHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544434344444332111100000000 00000 112334456778776655443321111111212234444444
Q ss_pred cC---CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185 366 LN---INPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG 442 (574)
Q Consensus 366 ~g---~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~ 442 (574)
++ .+....|+......++.+++..+.+++.||+++|+++..+.++.++..+. +.. .++.+..+....
T Consensus 251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~ 320 (417)
T 2cfq_A 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG-SSF---------ATSALEVVILKT 320 (417)
T ss_dssp SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HTT---------CCSHHHHHHHTT
T ss_pred HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH-HHH---------hccHHHHHHHHH
Confidence 43 22445677777777778888888999999999999887666555443221 111 011111111111
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCChhHHHHHH-HHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHH
Q 008185 443 LAETLAQFKLLPFSMLLARLCPQGCEGSLTSF-SASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLP 521 (574)
Q Consensus 443 l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl-~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~ 521 (574)
+..........+...+..|..|++.+|+++++ +++...+|+.++|.++|.+.+..|+ ...+.+.+++.+++
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--------~~~f~~~~~~~l~~ 392 (417)
T 2cfq_A 321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--------QGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--------HHHHHHHHHHHHHH
Confidence 11111112223345678999999999999999 4888889999999999998886552 23344444444444
Q ss_pred HHH-HHhcCCC
Q 008185 522 LIW-IHNVPMS 531 (574)
Q Consensus 522 l~~-~~~vp~~ 531 (574)
.+. +.+.||+
T Consensus 393 ~~~~~~~~~~~ 403 (417)
T 2cfq_A 393 TLISVFTLSGP 403 (417)
T ss_dssp HHHHTTSSCCS
T ss_pred HHHHHhhhcCC
Confidence 444 3345543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.84 E-value=1.4e-20 Score=204.96 Aligned_cols=155 Identities=14% Similarity=0.095 Sum_probs=125.1
Q ss_pred hhhhHHHHHHhcC------CChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccC
Q 008185 134 WLALNFHMAHNLS------LHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPV 206 (574)
Q Consensus 134 ~~~~~~~l~~~~~------~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~ 206 (574)
...++.++.+++| .++.+.+++.+++.++..+ .|+.|+++||+ .+||+.+.++.++..++..+++....
T Consensus 32 ~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----~g~r~~~~~~~~~~~~~~~~~~~~~~ 107 (524)
T 2xut_A 32 RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF----FGKYNTILWLSLIYCVGHAFLAIFEH 107 (524)
T ss_dssp HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS----SCSHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445557888899 9999999999999988766 77899999983 16777777777777777776666641
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHH---HHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 008185 207 AAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSY---AFMAAASGGILGNLFGGYFLLKTPPTTMFLVF 283 (574)
Q Consensus 207 ~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~---~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ 283 (574)
+ .+.+++.|++.+++.+...+...+++.|..++++|+.+.+. .+.+..+|.++||.+++++.+..|||+.|++.
T Consensus 108 ~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 S---VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp C---HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred c---HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 2 56678889999999888888888999999999999776665 78888999999999999999889999999998
Q ss_pred HHHHHHHHHHhh
Q 008185 284 AVLLSLQLAISF 295 (574)
Q Consensus 284 ai~~~~~~~~~~ 295 (574)
+++.++..++.+
T Consensus 185 ~~~~~~~~~~~~ 196 (524)
T 2xut_A 185 GVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.27 E-value=3.9e-11 Score=127.00 Aligned_cols=178 Identities=9% Similarity=-0.060 Sum_probs=124.4
Q ss_pred hhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHH
Q 008185 114 KQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGV 191 (574)
Q Consensus 114 ~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~ 191 (574)
+.++. +.+..++..+.. ......+.++++.+|.++.+.+++.++..++..+ .++.|+++||+. + +||+.+.++.
T Consensus 252 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~-~~~~~~~~~~ 327 (451)
T 1pw4_A 252 KLLWY-IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF--R-GNRGATGVFF 327 (451)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--T-TCHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CCchhHHHHH
Confidence 33443 444444444432 3334455577777899999999998888777655 778999999830 1 4555555555
Q ss_pred HHHH-HHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHH-HHHHHHHHHHH
Q 008185 192 FLQI-LSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAAS-GGILGNLFGGY 269 (574)
Q Consensus 192 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~-G~~igp~igg~ 269 (574)
.+.. +++.++...++.. ...+++..++.+++.+........++.|..|+++|+.++++.+....+ |..+||.++|+
T Consensus 328 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 328 MTLVTIATIVYWMNPAGN--PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHHTTSCCTTC--HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccC--HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 5555555543211 333445555556665555556678899999999999999999999999 99999999999
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHhhhc
Q 008185 270 FLLKTPPTTMFLVFAVLLSLQLAISFSA 297 (574)
Q Consensus 270 l~~~~gwr~~f~i~ai~~~~~~~~~~~l 297 (574)
+.+..||++.|++.+++.++..++.+++
T Consensus 406 l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 406 TVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877766665443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.96 E-value=3.5e-09 Score=111.63 Aligned_cols=159 Identities=8% Similarity=-0.046 Sum_probs=105.6
Q ss_pred hHHHHHHhcCC---ChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHH
Q 008185 137 LNFHMAHNLSL---HPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALP 212 (574)
Q Consensus 137 ~~~~l~~~~~~---s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 212 (574)
.+.++.+.++. +....++..++..+...+ .++.|+++||+ +||+.+.++.++..+.+.+.+...+ ..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~----~~ 313 (417)
T 2cfq_A 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATS----AL 313 (417)
T ss_dssp HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHTTCCS----HH
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhcc----HH
Confidence 44466665542 234456666655554433 66789999996 4555565666666666655554432 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHH-HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 008185 213 NLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSY-AFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQL 291 (574)
Q Consensus 213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~-~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~ 291 (574)
.+++..++.+++..........++.|..|++.||.++++ ++....+|.++||.++|++.+..|++..|++.+++.++..
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~ 393 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 344444444444443333446788999999999998887 4677789999999999999988899999999888777766
Q ss_pred HHh-hhcccccccc
Q 008185 292 AIS-FSAREESLGL 304 (574)
Q Consensus 292 ~~~-~~lpEt~~~~ 304 (574)
++. ++.||++...
T Consensus 394 ~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 394 LISVFTLSGPGPLS 407 (417)
T ss_dssp HHHTTSSCCSCTTC
T ss_pred HHHHhhhcCCCchH
Confidence 654 4577765443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.92 E-value=8.5e-09 Score=108.55 Aligned_cols=150 Identities=9% Similarity=-0.101 Sum_probs=104.5
Q ss_pred hhhHHH-HHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHH
Q 008185 135 LALNFH-MAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALP 212 (574)
Q Consensus 135 ~~~~~~-l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 212 (574)
...+.+ +++.+|.+..+.++..++..+...+ .++.|+++||+ +||+.+.++.++..++..++...++ ..
T Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 349 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVLAAYALIAMALCLISAFAGG----HV 349 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHCCH----HH
T ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHcCC----cH
Confidence 334456 7887899999999999888776655 77899999985 5666666676666666665555532 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHH
Q 008185 213 NLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP-PTTMFLVFAVLLSLQL 291 (574)
Q Consensus 213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g-wr~~f~i~ai~~~~~~ 291 (574)
. ++..++.+++.+...+...++..|..+++ ++.+.++.. ...+|..++|.+.|++.+..| +++.|++.++..++..
T Consensus 350 ~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 350 G-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp H-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 2 23334445555555556667777887755 777777655 556999999999999999888 9999998765554444
Q ss_pred HHhhh
Q 008185 292 AISFS 296 (574)
Q Consensus 292 ~~~~~ 296 (574)
+..++
T Consensus 427 ~~~~~ 431 (438)
T 3o7q_A 427 IFARF 431 (438)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 33333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.74 E-value=2.2e-07 Score=99.43 Aligned_cols=131 Identities=14% Similarity=0.002 Sum_probs=96.2
Q ss_pred ceeehccc-----cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCc
Q 008185 358 MFCYQTQC-----LNINPSVIGMSRVIGQSMLLSLTVFYDRYWKK-VPLRKLVGAVQILYASSLLLDLILVRQINLQFGV 431 (574)
Q Consensus 358 ~~~~~~~~-----~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r-~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~ 431 (574)
++.|..+. +|+++.+.|+......++..++.++.+++.|| +++|+.+..+.++.++..++.. +.
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~--------- 105 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA-LP--------- 105 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-SC---------
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-Hh---------
Confidence 34455555 99999999999999999999999999999999 8999999888777665544221 11
Q ss_pred CcceEEeehhHHHHHHHH-hhHHHHHHHHHhhcCCCh--hHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185 432 PNEVFVLCFAGLAETLAQ-FKLLPFSMLLARLCPQGC--EGSLTSFSASALCLSSIASGFLGVGLASLTGI 499 (574)
Q Consensus 432 ~~~~~~l~~~~l~~~~~~-~~~~p~~~l~~~~~p~~~--~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~ 499 (574)
++.+. +....+..+++. ....+..+++.|.+|++. |+.++++++...++|..++|.+++.+.+..|+
T Consensus 106 ~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 106 FGASA-LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp CSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred hhHHH-HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 11111 111222223333 333344678899999988 88899999999999999999999999987764
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.61 E-value=1.2e-07 Score=102.50 Aligned_cols=133 Identities=7% Similarity=-0.126 Sum_probs=93.6
Q ss_pred cceeehccccC------CCchhHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 008185 357 SMFCYQTQCLN------INPSVIGMSRVIGQSMLLSLTVFYDRYWKKV-PLRKLVGAVQILYASSLLLDLILVRQINLQF 429 (574)
Q Consensus 357 ~~~~~~~~~~g------~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~-~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~ 429 (574)
.++.|..+.+| +++.+.|+......++.+++.++.+++.||+ ++|+++..+.++.++..+... +..
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~------ 106 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA-IFE------ 106 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH-HTS------
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-Hhc------
Confidence 34446667788 9999999999999999999999999999999 999998887776655443321 110
Q ss_pred CcCcceEEeehhHHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHH---HHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185 430 GVPNEVFVLCFAGLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSF---SASALCLSSIASGFLGVGLASLTGI 499 (574)
Q Consensus 430 ~~~~~~~~l~~~~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl---~~~~~~lg~~lg~~i~g~l~~~~g~ 499 (574)
.+.+..+. ..+..+++ +....+..+++.|.+|++.|++..+. .+...++|..++|.+++.+.+..|+
T Consensus 107 --~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (524)
T 2xut_A 107 --HSVQGFYT-GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA 177 (524)
T ss_dssp --SCHHHHHH-HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred --ccHHHHHH-HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 01111111 12222333 33334456789999999999765444 8888999999999999988876553
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.60 E-value=1.1e-08 Score=105.46 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=105.2
Q ss_pred hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185 362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA 441 (574)
Q Consensus 362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~ 441 (574)
..+.+|.++.+.|+......++..++....+++.||+++|+.+..+.++..+..+... ... +.+. +...
T Consensus 26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~---------~~~~-l~~~ 94 (375)
T 2gfp_A 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TTS---------SLTV-LIAA 94 (375)
T ss_dssp HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HHH---------HHHH-HHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-Hhc---------cHHH-HHHH
Confidence 3567999999999999999999999999999999999999998888777666544322 111 1111 1111
Q ss_pred HHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHH
Q 008185 442 GLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALL 520 (574)
Q Consensus 442 ~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll 520 (574)
.+..+++. ........++.|..|+++|++++++.+....+|..++|.+++.+.+..|+. ..+.+.++..++
T Consensus 95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~ 166 (375)
T 2gfp_A 95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR--------ACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH--------HHHHHHHHHHHH
Confidence 22223332 233334677899999999999999999999999999999999988766532 223333333333
Q ss_pred HHH-HHHhcCCCHH
Q 008185 521 PLI-WIHNVPMSET 533 (574)
Q Consensus 521 ~l~-~~~~vp~~~~ 533 (574)
..+ ....+||+++
T Consensus 167 ~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 167 VTFSMARWMPETRP 180 (375)
T ss_dssp HHCCCCCSSCCCST
T ss_pred HHHHHHHHCcccCC
Confidence 333 3456777654
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.43 E-value=2.1e-06 Score=91.69 Aligned_cols=158 Identities=11% Similarity=-0.064 Sum_probs=97.0
Q ss_pred HHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhccc-CccchHHHHHHH
Q 008185 140 HMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFP-VAAKALPNLMAC 217 (574)
Q Consensus 140 ~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 217 (574)
.+.+..+.+.........+..+... ..++.+.+.||+ +||+.++.+.....++...++... ...... ..++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 375 (491)
T 4gc0_A 302 EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-----GRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLS 375 (491)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH-HHHHH
T ss_pred HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-----cCcchhccchHHHHHHHHHHHHHHhcccchH-HHHHH
Confidence 3444567776666554444444333 366789999985 466666656665555544443321 111111 11122
Q ss_pred H--HHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc------cCChhHHHHHHHHHHHH
Q 008185 218 V--LLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL------KTPPTTMFLVFAVLLSL 289 (574)
Q Consensus 218 ~--~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~------~~gwr~~f~i~ai~~~~ 289 (574)
. +...++.+.. +....+.+|..|.+.|+.++++......+|..+++.+...+.+ ..++.+.|++.+++.++
T Consensus 376 ~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (491)
T 4gc0_A 376 MLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 454 (491)
T ss_dssp HHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2 2222222222 2234678999999999999999888888888888777655432 35677889998888887
Q ss_pred HHHHh-hhcccccccc
Q 008185 290 QLAIS-FSAREESLGL 304 (574)
Q Consensus 290 ~~~~~-~~lpEt~~~~ 304 (574)
..++. +++|||+...
T Consensus 455 ~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 455 AALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHHHHCCCCTTCC
T ss_pred HHHHHHheecCCCCCC
Confidence 77765 6899997543
No 15
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=42.40 E-value=2e+02 Score=28.48 Aligned_cols=23 Identities=22% Similarity=-0.018 Sum_probs=11.4
Q ss_pred HHhcCCchhH--HHHHHHHHHHHHh
Q 008185 394 YWKKVPLRKL--VGAVQILYASSLL 416 (574)
Q Consensus 394 l~~r~~~r~l--l~~~~ll~~~~~l 416 (574)
+.++++.++. +++++++.+++..
T Consensus 123 l~G~~~~~~~~~YiiAQ~lGA~~GA 147 (340)
T 3iyz_A 123 CTRKISIAKSVFYITAQCLGAIIGA 147 (340)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455565554 3455555544443
No 16
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=32.10 E-value=3.1e+02 Score=26.54 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=14.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhc
Q 008185 504 YSSLPVGIVIQFLAALLPLIWIHNV 528 (574)
Q Consensus 504 ~~~l~~~~li~~~~~ll~l~~~~~v 528 (574)
+.+.|..++...+.++++.+++.++
T Consensus 205 w~~~WVy~vgPiiGailaa~ly~~l 229 (301)
T 2zz9_A 205 WENHWIYWVGPIIGAVLAGALYEYV 229 (301)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CcceeeeeeHHHHHHHHHHHHHHHH
Confidence 4455666666666566655555433
No 17
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=29.40 E-value=21 Score=20.49 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=8.0
Q ss_pred CcCCCCCCcccc
Q 008185 90 SWAGGGGDEERR 101 (574)
Q Consensus 90 ~w~~~~d~~np~ 101 (574)
.||.+|||...+
T Consensus 13 ewdddddppkkr 24 (28)
T 3ukx_C 13 EWDDDDDPPKKR 24 (28)
T ss_dssp CCCCSSSCCSCC
T ss_pred ccccCCCchhhh
Confidence 688777775443
No 18
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=21.36 E-value=29 Score=26.36 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=14.1
Q ss_pred cccccccccccccCCcCCCCCCc
Q 008185 76 ESSSVSLKESKRLGSWAGGGGDE 98 (574)
Q Consensus 76 ~~~~~~~~~~~~~v~w~~~~d~~ 98 (574)
.|....+....|+|.|.|-++.+
T Consensus 21 ~~r~~~~g~~~YlVKWkGy~~~~ 43 (78)
T 2dnt_A 21 DKRKNKKGKTEYLVRWKGYDSED 43 (78)
T ss_dssp EEEECTTSCEEEEECBTTBCGGG
T ss_pred EEEEcCCCcEEEEEEECCCCccC
Confidence 34333334578999999855433
Done!