BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008187
         (574 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HB6|A Chain A, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
           (Lap1)
 pdb|2HB6|B Chain B, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
           (Lap1)
 pdb|2HC9|A Chain A, Structure Of Caenorhabditis Elegans Leucine
           Aminopeptidase-Zinc Complex (Lap1)
          Length = 491

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 208 HKSDGETIEWL-LQQAEPAIIAATGTGTIPANFSTL 242
           H   GE + WL L  A PA +   GTG  PA FSTL
Sbjct: 444 HIGFGEGLRWLHLDIAAPAEVGDRGTGYGPALFSTL 479


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,506,561
Number of Sequences: 62578
Number of extensions: 226628
Number of successful extensions: 260
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 1
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)