Query 008187
Match_columns 574
No_of_seqs 147 out of 286
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 20:13:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008187.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008187hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ya1 a.8.1.2 (A:1-53) PAB { 23.7 15 0.0011 27.2 1.6 21 216-236 4-25 (53)
2 d1a1ia3 g.37.1.1 (A:160-187) Z 22.0 5.3 0.00039 26.6 -1.1 10 176-185 19-28 (28)
3 d1oc2a_ c.2.1.2 (A:) dTDP-gluc 14.4 54 0.004 28.0 3.3 22 202-223 296-325 (346)
4 d2hzaa1 a.43.1.3 (A:1-48) Nick 12.2 72 0.0052 22.6 2.9 34 189-222 6-39 (48)
5 d2c5aa1 c.2.1.2 (A:13-375) GDP 12.0 46 0.0034 28.5 2.1 23 201-223 300-329 (363)
6 d1uxda_ a.35.1.5 (A:) Fructose 11.8 33 0.0024 24.8 0.9 28 184-211 23-50 (59)
7 d1qpza1 a.35.1.5 (A:2-58) Puri 11.7 71 0.0052 22.9 2.8 22 190-211 26-47 (57)
8 d1dmua_ c.52.1.4 (A:) Restrict 11.3 28 0.002 32.4 0.5 26 173-199 263-288 (299)
9 d1rpna_ c.2.1.2 (A:) GDP-manno 11.0 57 0.0042 27.1 2.3 22 202-223 291-319 (321)
10 d1n7ha_ c.2.1.2 (A:) GDP-manno 10.6 55 0.004 27.3 2.1 23 202-224 301-330 (339)
No 1
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=23.66 E-value=15 Score=27.20 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=15.8
Q ss_pred HHHHhhcH-HHHHHhhCCCCCC
Q 008187 216 EWLLQQAE-PAIIAATGTGTIP 236 (574)
Q Consensus 216 eWLL~qsk-pAI~aaTgtgtiP 236 (574)
+|||.+|| .||.++...|+.-
T Consensus 4 ~~~Lk~AKe~AI~eLK~~GIts 25 (53)
T d2j5ya1 4 QWLLKNAKEDAIAELKKAGITS 25 (53)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCccH
Confidence 79999997 5677777766533
No 2
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.99 E-value=5.3 Score=26.61 Aligned_cols=10 Identities=50% Similarity=0.780 Sum_probs=8.7
Q ss_pred CCcccccCCC
Q 008187 176 KDRHTKVDGR 185 (574)
Q Consensus 176 KDRHSKV~~R 185 (574)
+.||+|||.|
T Consensus 19 rkRH~kiH~k 28 (28)
T d1a1ia3 19 RKRHTKIHLR 28 (28)
T ss_dssp HHHHHGGGCC
T ss_pred hhhhhhhccC
Confidence 7899999975
No 3
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=14.38 E-value=54 Score=28.01 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=15.4
Q ss_pred hhhhhCCCCC-c-------hHHHHHHhhcH
Q 008187 202 LTRELGHKSD-G-------ETIEWLLQQAE 223 (574)
Q Consensus 202 LQdeLGfdk~-s-------kTIeWLL~qsk 223 (574)
++++|||+.- + +||+|++++-+
T Consensus 296 ~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~ 325 (346)
T d1oc2a_ 296 LRDELGWTPQFTDFSEGLEETIQWYTDNQD 325 (346)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 4467888732 2 79999998644
No 4
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.25 E-value=72 Score=22.64 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=31.1
Q ss_pred cccCHHHHHHHhhhhhhhCCCCCchHHHHHHhhc
Q 008187 189 IRMPATCAARVFQLTRELGHKSDGETIEWLLQQA 222 (574)
Q Consensus 189 mRLs~~~A~rfF~LQdeLGfdk~skTIeWLL~qs 222 (574)
|.||-+...+|=.+-.+.||..-||+|.=|++..
T Consensus 6 Vslp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~ 39 (48)
T d2hzaa1 6 ITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSA 39 (48)
T ss_dssp EEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 6789999999999999999999999999988753
No 5
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.95 E-value=46 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=16.5
Q ss_pred hhhhhhCCCCC-------chHHHHHHhhcH
Q 008187 201 QLTRELGHKSD-------GETIEWLLQQAE 223 (574)
Q Consensus 201 ~LQdeLGfdk~-------skTIeWLL~qsk 223 (574)
.+.++|||+.- .+||+|++++-+
T Consensus 300 ka~~~LGw~p~~sleegi~~ti~w~~~~~~ 329 (363)
T d2c5aa1 300 LIKEKLGWAPNMRLKEGLRITYFWIKEQIE 329 (363)
T ss_dssp HHHHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45567898743 689999987643
No 6
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.82 E-value=33 Score=24.85 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=23.9
Q ss_pred CCCcccccCHHHHHHHhhhhhhhCCCCC
Q 008187 184 GRGRRIRMPATCAARVFQLTRELGHKSD 211 (574)
Q Consensus 184 ~RDRRmRLs~~~A~rfF~LQdeLGfdk~ 211 (574)
++....|++.++..||...-++|||...
T Consensus 23 ~~~~~~~vs~~tr~rV~~~a~~lgY~pn 50 (59)
T d1uxda_ 23 GKAKQYRVSDKTVEKVMAVVREHNYHPN 50 (59)
T ss_dssp TCGGGTTCTTTTHHHHHHHHHHHTCCCC
T ss_pred CCCCcCcCCHHHHHHHHHHHHHHCCCcC
Confidence 5666678999999999999999999754
No 7
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.67 E-value=71 Score=22.95 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=20.1
Q ss_pred ccCHHHHHHHhhhhhhhCCCCC
Q 008187 190 RMPATCAARVFQLTRELGHKSD 211 (574)
Q Consensus 190 RLs~~~A~rfF~LQdeLGfdk~ 211 (574)
+++.+...||.++-++|||..+
T Consensus 26 ~vs~~tr~rV~~~a~~lgY~pn 47 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELHYSPS 47 (57)
T ss_dssp CCCHHHHHHHHHHHHHHTCCCC
T ss_pred ccCHHHHHHHHHHHHHHCCCCC
Confidence 5899999999999999999865
No 8
>d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus subtilis [TaxId: 1423]}
Probab=11.27 E-value=28 Score=32.44 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.9
Q ss_pred CCCCCcccccCCCCcccccCHHHHHHH
Q 008187 173 RSTKDRHTKVDGRGRRIRMPATCAARV 199 (574)
Q Consensus 173 rs~KDRHSKV~~RDRRmRLs~~~A~rf 199 (574)
++.||.-+| +.|-||+|.++.+-.||
T Consensus 263 ~pGKDe~tK-d~~~rR~RV~l~~L~rI 288 (299)
T d1dmua_ 263 RPGKDDRTK-SLLQKRVRVDLRVLDKI 288 (299)
T ss_dssp EECSCCTTS-CTTSCCEEEEHHHHTTS
T ss_pred cCCcccccc-ChhhceEEEeeeehhhc
Confidence 356776555 68999999999887665
No 9
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.00 E-value=57 Score=27.10 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=16.0
Q ss_pred hhhhhCCCCC-c------hHHHHHHhhcH
Q 008187 202 LTRELGHKSD-G------ETIEWLLQQAE 223 (574)
Q Consensus 202 LQdeLGfdk~-s------kTIeWLL~qsk 223 (574)
+.++|||+.. + +||||.|+++|
T Consensus 291 ~~k~lG~~P~~~l~e~i~~tv~~~l~~~~ 319 (321)
T d1rpna_ 291 AQRVLGWKPRTSLDELIRMMVEADLRRVS 319 (321)
T ss_dssp HHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcCCCHHHHHHHHHHHHHHHhc
Confidence 4567898653 2 78999888765
No 10
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.64 E-value=55 Score=27.33 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=16.9
Q ss_pred hhhhhCCCCC-------chHHHHHHhhcHH
Q 008187 202 LTRELGHKSD-------GETIEWLLQQAEP 224 (574)
Q Consensus 202 LQdeLGfdk~-------skTIeWLL~qskp 224 (574)
+.++|||+.- -+||||-|+.+|.
T Consensus 301 ak~~LGw~P~~~le~gi~~ti~~~~~~~~~ 330 (339)
T d1n7ha_ 301 AKEVLGWKPQVGFEKLVKMMVDEDLELAKR 330 (339)
T ss_dssp HHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 4677888753 5799999987653
Done!