Query 008190
Match_columns 574
No_of_seqs 370 out of 1788
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 20:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 1E-136 3E-141 1131.1 51.5 521 13-573 1-544 (636)
2 KOG2287 Galactosyltransferases 100.0 1.5E-43 3.3E-48 372.1 20.3 248 326-574 5-258 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 2.5E-37 5.4E-42 327.1 17.1 192 365-572 103-306 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 1.3E-33 2.9E-38 272.2 12.6 145 429-573 1-151 (195)
5 smart00276 GLECT Galectin. Gal 100.0 6.1E-32 1.3E-36 246.3 17.0 128 182-388 1-128 (128)
6 PF00337 Gal-bind_lectin: Gala 100.0 6.7E-31 1.5E-35 239.3 15.3 133 181-387 1-133 (133)
7 cd00070 GLECT Galectin/galacto 100.0 1.2E-30 2.7E-35 237.1 16.4 126 182-386 2-127 (127)
8 KOG3587 Galectin, galactose-bi 99.9 4.7E-26 1E-30 212.3 16.3 136 181-390 5-141 (143)
9 PTZ00210 UDP-GlcNAc-dependent 99.9 2E-26 4.4E-31 241.5 13.4 139 412-550 77-244 (382)
10 KOG2288 Galactosyltransferases 99.9 3.5E-24 7.6E-29 214.0 15.7 152 412-566 8-167 (274)
11 PF02434 Fringe: Fringe-like; 98.9 2.9E-09 6.4E-14 108.2 6.4 117 415-543 6-125 (252)
12 KOG2246 Galactosyltransferases 98.5 3.1E-07 6.6E-12 98.3 8.3 112 412-542 88-206 (364)
13 PLN03153 hypothetical protein; 96.1 0.021 4.6E-07 63.9 9.1 118 412-543 119-249 (537)
14 PF00535 Glycos_transf_2: Glyc 79.9 41 0.00089 29.4 12.1 112 417-541 2-116 (169)
15 KOG3708 Uncharacterized conser 76.7 6 0.00013 44.8 6.6 104 414-539 25-132 (681)
16 cd04195 GT2_AmsE_like GT2_AmsE 64.4 53 0.0012 30.7 9.4 86 449-540 30-118 (201)
17 TIGR03472 HpnI hopanoid biosyn 62.2 1.8E+02 0.0039 31.2 14.0 107 416-529 42-150 (373)
18 cd06423 CESA_like CESA_like is 61.5 68 0.0015 27.9 9.0 92 432-529 10-102 (180)
19 cd04192 GT_2_like_e Subfamily 58.8 1.6E+02 0.0035 27.7 11.8 88 449-541 29-120 (229)
20 cd02525 Succinoglycan_BP_ExoA 57.3 1.8E+02 0.0039 27.8 12.8 87 447-540 30-118 (249)
21 PF13641 Glyco_tranf_2_3: Glyc 57.2 41 0.00089 32.2 7.4 116 417-541 3-124 (228)
22 cd04187 DPM1_like_bac Bacteria 56.2 92 0.002 28.7 9.4 89 448-542 29-118 (181)
23 cd04179 DPM_DPG-synthase_like 53.9 87 0.0019 28.6 8.8 89 448-542 28-118 (185)
24 PRK11204 N-glycosyltransferase 53.8 2.1E+02 0.0047 30.7 13.0 75 449-529 84-158 (420)
25 cd06434 GT2_HAS Hyaluronan syn 51.5 2.3E+02 0.0049 27.1 13.1 74 448-529 28-101 (235)
26 cd06435 CESA_NdvC_like NdvC_li 48.6 73 0.0016 30.7 7.7 78 448-529 28-108 (236)
27 cd04185 GT_2_like_b Subfamily 47.4 1.4E+02 0.0029 28.1 9.1 45 496-541 71-117 (202)
28 cd04196 GT_2_like_d Subfamily 46.1 1.5E+02 0.0032 27.7 9.1 102 432-539 11-116 (214)
29 cd02520 Glucosylceramide_synth 39.2 2.2E+02 0.0048 26.9 9.3 89 448-539 30-122 (196)
30 cd04186 GT_2_like_c Subfamily 39.2 2.7E+02 0.0058 24.5 10.9 30 500-529 69-98 (166)
31 cd06433 GT_2_WfgS_like WfgS an 38.8 2.6E+02 0.0056 25.4 9.4 46 496-541 66-114 (202)
32 cd04191 Glucan_BSP_ModH Glucan 33.9 3.2E+02 0.0069 28.0 9.9 110 419-529 3-119 (254)
33 cd04184 GT2_RfbC_Mx_like Myxoc 33.5 3.9E+02 0.0085 24.7 14.0 87 448-539 31-120 (202)
34 COG4713 Predicted membrane pro 33.4 32 0.0007 37.9 2.7 21 12-32 285-305 (489)
35 cd06427 CESA_like_2 CESA_like_ 33.1 4.7E+02 0.01 25.5 11.0 34 496-529 75-108 (241)
36 TIGR03469 HonB hopene-associat 32.2 6.7E+02 0.014 27.0 14.2 81 448-529 70-157 (384)
37 cd06439 CESA_like_1 CESA_like_ 31.5 4.9E+02 0.011 25.2 15.0 117 415-541 29-147 (251)
38 cd04188 DPG_synthase DPG_synth 30.3 4E+02 0.0087 25.2 9.5 88 448-541 30-120 (211)
39 PRK14583 hmsR N-glycosyltransf 28.4 8.2E+02 0.018 26.8 13.8 105 415-529 75-179 (444)
40 cd06421 CESA_CelA_like CESA_Ce 28.2 2.3E+02 0.005 26.9 7.4 32 498-529 77-108 (234)
41 cd06442 DPM1_like DPM1_like re 26.6 4.6E+02 0.01 24.7 9.2 44 498-541 71-116 (224)
42 PF10111 Glyco_tranf_2_2: Glyc 23.2 6.7E+02 0.014 25.7 10.2 77 447-528 33-111 (281)
43 PF06439 DUF1080: Domain of Un 22.6 2.2E+02 0.0048 26.6 6.0 38 327-364 120-157 (185)
44 cd06438 EpsO_like EpsO protein 22.5 6.2E+02 0.014 23.4 10.6 38 504-541 80-118 (183)
45 COG4092 Predicted glycosyltran 22.5 2.3E+02 0.0049 30.4 6.4 98 427-528 18-117 (346)
46 PF13506 Glyco_transf_21: Glyc 22.3 2.2E+02 0.0049 27.3 6.1 35 504-538 30-66 (175)
47 PLN02726 dolichyl-phosphate be 22.0 7.6E+02 0.016 24.2 13.4 87 448-540 40-130 (243)
48 PF13704 Glyco_tranf_2_4: Glyc 20.9 5E+02 0.011 21.7 7.6 49 474-522 40-88 (97)
49 cd06913 beta3GnTL1_like Beta 1 20.5 3.7E+02 0.0081 25.6 7.3 32 498-529 77-108 (219)
50 TIGR01556 rhamnosyltran L-rham 20.2 4.5E+02 0.0097 26.4 8.1 55 472-529 42-97 (281)
51 cd06420 GT2_Chondriotin_Pol_N 20.2 6.5E+02 0.014 22.8 9.5 34 497-530 71-104 (182)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.4e-136 Score=1131.11 Aligned_cols=521 Identities=46% Similarity=0.847 Sum_probs=486.0
Q ss_pred ccccchhHHHHHHHHHHHHHhhcccccccccccchhhhhhcccccCccccCC--------CCCCCccCCCCCcchhhhcc
Q 008190 13 MRNWSGGLLIMALAIILVMSYSFMGTQTQTQHRTQTQKQKHKQSANDFFRNH--------PSNDSDMKGSQGVKEVKKTQ 84 (574)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 84 (574)
||||+||+||++|||+|+|||+ ++++|.++.++ ..+|+.|+ ++.++++++| +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~------~--- 60 (636)
T PLN03133 1 MKKWYGGVLVVSLFMLLVLRYV-LLKNPIGESYL----------QSVFPSNTTNPLEWLDPTNPPAVQNP------E--- 60 (636)
T ss_pred CceeeeeehHHHHHHHHHHHHH-HhcCCCCCCCc----------ccccccccCCchhhcccCCCccccCC------C---
Confidence 9999999999999999999998 99999998877 34677676 4445555555 4
Q ss_pred cccCCCeEeeec-CCCCcccCCCCCCCCCccchhhhhhHhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhhhccC---
Q 008190 85 KLFEKPHIINVQ-GLGDLYSLKNMLGEDSRPLLVWGHMRLLLSRSDALPETAQGVKEAAIAWKDLLSVIEEEKASKF--- 160 (574)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~~~~~~~~--- 160 (574)
+++++++.+ ++|+||+++|+|+|++++|++|+|||+|++|+++||+|++||+||+.||++|++++++++++..
T Consensus 61 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~ 137 (636)
T PLN03133 61 ---NSSQVISTDTIVSSLFATRNISNEEQQSLLTWNHLKHLVDHAQVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNES 137 (636)
T ss_pred ---ccceeeccccchhhccccccCchhhhhhhhHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 677888888 9999999999999999999999999999999999999999999999999999999996555322
Q ss_pred ----CCCCCCCcceecccccccCC-CeeEeeCCCCCCCcEEEEEEEeCCCCCceEEEeccCCCCCCCCCCeEEEEeeecC
Q 008190 161 ----SRRKNCPPFVSNLSKSLSSG-RLIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLP 235 (574)
Q Consensus 161 ----~~~~~cp~~v~~~~~~~~~~-~~~~~lPcGL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LHfNpRf~ 235 (574)
.++++||+||+.|+++++++ +|++.|||||.+|++|||+|+|+++++||+|||+|+..+|++++||||||||||+
T Consensus 138 ~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~ 217 (636)
T PLN03133 138 SLRKSKEKQCPYFLNKMNATELGDSGYKLKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLL 217 (636)
T ss_pred ccccCCCCCCchhhhhcccccccCCceEEecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccC
Confidence 27789999999999999865 5999999999999999999999999999999999998888788999999999999
Q ss_pred CCCCCCCCEEEEcCccCCCCcccceecCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhh
Q 008190 236 GDNMTEEPFIIQNSWTNELGWGKEERCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDML 315 (574)
Q Consensus 236 ~d~~~~~pvIv~NS~~~~~~WG~EeRc~~~~s~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (574)
+|+++++|+||||||+.+|+||.||||++|+|.++++||||++||||+|++++++++++++ ||
T Consensus 218 gd~~t~~~vIV~NT~~~~~~WG~EERc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~-----------------~~ 280 (636)
T PLN03133 218 GDKITEDPVIVQNTWTAAHDWGEEERCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLH-----------------SN 280 (636)
T ss_pred CCccccCCEEEeCCCcCCCcccHhhhcCCCCccccccccchhhhhhhhccccccccccccc-----------------cc
Confidence 9998999999999999449999999999999999999999999999999999999998877 78
Q ss_pred hcc----cccCCCCCCCCCCCCCCcEEEEEEEcCCeEEEEeCCeeeEEeeccccCCCCceeEEEEeCceeeeeecccCCC
Q 008190 316 ANA----SRVGAHETSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEGLP 391 (574)
Q Consensus 316 ~~~----~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~VnG~H~tsF~yR~~l~p~~v~~l~I~GDv~l~sv~~~glP 391 (574)
+++ ++++++.+++|||++|++|++||+||.|||||+|||+|+|+|+||++++||.|++|+|+|||+|+||.+.++|
T Consensus 281 ~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~VnG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p 360 (636)
T PLN03133 281 GSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMTVDGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLP 360 (636)
T ss_pred ccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEEECCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCC
Confidence 886 7888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccChhhhcCCCCC-CCCeeEEEEEeCCcCCHHHHHHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHH
Q 008190 392 VSEDFDFIVDVEHLKAPLIS-RKRLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKE 470 (574)
Q Consensus 392 ~s~~~~~~~~~e~l~~Pp~~-~~~~~LLI~V~Sap~nfeRR~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eE 470 (574)
.+|++++++++|.|++||++ +.+++|+|+|+|+|+||+||+|||+|||+....++..++++||+|.+.++.++..|++|
T Consensus 361 ~~~~~~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~E 440 (636)
T PLN03133 361 TSEDSEHVIDLEALKSPPLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNE 440 (636)
T ss_pred CCCchhcccchHHhcCCCCCCCCceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHH
Confidence 99999999999999999988 67799999999999999999999999999776667789999999999999999999999
Q ss_pred HhhcCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc-CCCCCeEEEEeeCCCCcccC
Q 008190 471 AQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRD 549 (574)
Q Consensus 471 ae~ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~-~~~~~ly~G~v~~~~~PiRd 549 (574)
+++||||||+||.|+|+|||+||+++++|+.+|++++||||+|||+|||+++|+++|+. ...+++|+|++..+.+|+|+
T Consensus 441 a~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd 520 (636)
T PLN03133 441 ARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRN 520 (636)
T ss_pred HHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999987 55678999999999999999
Q ss_pred CCCCcccchhhhcCCCCCCcccCC
Q 008190 550 KDSKWYISNEVSVSIKNHSVDDHW 573 (574)
Q Consensus 550 p~sKWyVS~eeYP~~t~~~~~~~~ 573 (574)
+.+|||||+++||...|+++.+|-
T Consensus 521 ~~sKWYVs~~eyp~~~YPpYasG~ 544 (636)
T PLN03133 521 PDSKWYISPEEWPEETYPPWAHGP 544 (636)
T ss_pred CCCCCCCCHHHCCCCCCCCCCCcC
Confidence 999999999999999999999874
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=372.07 Aligned_cols=248 Identities=32% Similarity=0.441 Sum_probs=221.7
Q ss_pred CCCCCCCCCCcEEEEEEEcCCeEEEEeCCeeeEEeeccccCCCCceeEEEEeCceeeeeecccCCCCCCccccccChhhh
Q 008190 326 TSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEGLPVSEDFDFIVDVEHL 405 (574)
Q Consensus 326 ~~~fPF~~G~~F~lti~~g~egf~v~VnG~H~tsF~yR~~l~p~~v~~l~I~GDv~l~sv~~~glP~s~~~~~~~~~e~l 405 (574)
.+.+|+..+..|+.++.++.+++++.+++++.++|.++...+.+..++...++.+..++.....++.+...-.. ....+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 83 (349)
T KOG2287|consen 5 EFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQK-FFYLL 83 (349)
T ss_pred cccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhcc-Chhhh
Confidence 36789999999999999999999999999999999999987778889999999886666666666655432211 34566
Q ss_pred cCCCCCCC--CeeEEEEEeCCcCCHHHHHHHHHHhcCCCCcCCCCeEEEEEeeccCCh-hhhHHHHHHHhhcCCeEEeec
Q 008190 406 KAPLISRK--RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNR-QVNFELWKEAQAYGDIQIMPF 482 (574)
Q Consensus 406 ~~Pp~~~~--~~~LLI~V~Sap~nfeRR~aIReTWg~~~~v~~~~V~v~FvVG~~~n~-~~~~~L~eEae~ygDIL~ldF 482 (574)
..|+.|.. .++|+++|+|+++|++||++||+|||++..+++.+++++|++|.+.++ .++.+|.+|++.||||||+||
T Consensus 84 ~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df 163 (349)
T KOG2287|consen 84 YLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDF 163 (349)
T ss_pred cCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEec
Confidence 77777733 389999999999999999999999999988889999999999999875 568899999999999999999
Q ss_pred ccccCchhHHHHHHHHHH-hcCCCCcEEEEeCCceeecHHHHHHHhhcC--CCCCeEEEEeeCCCCcccCCCCCcccchh
Q 008190 483 VDYYSLISLKTIAICIFG-TKILPAKYIMKTDDDAFVRIDEVLSNLKEK--PSNGLLFGLMSYDSSPQRDKDSKWYISNE 559 (574)
Q Consensus 483 ~DsY~NLTlKTl~~l~wa-~~c~~akfVmK~DDDtFVnvd~Ll~~L~~~--~~~~ly~G~v~~~~~PiRdp~sKWyVS~e 559 (574)
.|+|+|+|+||++++.|+ .+|++++||||+|||+||++++|+++|.+. +.+.+|+|++..+..|+|++.+|||||++
T Consensus 164 ~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~ 243 (349)
T KOG2287|consen 164 EDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES 243 (349)
T ss_pred ccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH
Confidence 999999999999999998 569999999999999999999999999985 77889999999999999999999999999
Q ss_pred hhcCCCCCCcccCCC
Q 008190 560 VSVSIKNHSVDDHWA 574 (574)
Q Consensus 560 eYP~~t~~~~~~~~~ 574 (574)
+||...|+++.+|++
T Consensus 244 ~y~~~~YP~Y~sG~g 258 (349)
T KOG2287|consen 244 EYPCSVYPPYASGPG 258 (349)
T ss_pred HCCCCCCCCcCCCce
Confidence 999999999999863
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.5e-37 Score=327.05 Aligned_cols=192 Identities=22% Similarity=0.284 Sum_probs=164.9
Q ss_pred cCCCCceeEEEEeCceeeeeecccCCCCCCccccccChhhhcCCCCCCCCeeEEEEEeCCcCCHHHHHHHHHHhcCCCCc
Q 008190 365 KLEPWSVTGVKVAGGVDLFSAFAEGLPVSEDFDFIVDVEHLKAPLISRKRLVMLIGVFSTGNNFERRMALRRSWMQYPAV 444 (574)
Q Consensus 365 ~l~p~~v~~l~I~GDv~l~sv~~~glP~s~~~~~~~~~e~l~~Pp~~~~~~~LLI~V~Sap~nfeRR~aIReTWg~~~~v 444 (574)
.||+|.+++.+ +.++...++|.+++++. + |...+.+++|+|+|+|+++|++||++||+|||+....
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~~------~--~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~ 168 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLKK------T--QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEK 168 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCccccccc------c--CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCccc
Confidence 46777777766 66777888899888753 2 3333677999999999999999999999999986442
Q ss_pred C-----CCCeEEEEEeeccC--ChhhhHHHHHHHhhcCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCcee
Q 008190 445 R-----SGDLAVRFFIGLHK--NRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAF 517 (574)
Q Consensus 445 ~-----~~~V~v~FvVG~~~--n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtF 517 (574)
. ...++++||+|++. +..++.+|++|+++|||||++||+|+|+|||+||+++|+|+..+++++||||+|||+|
T Consensus 169 ~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvf 248 (408)
T PLN03193 169 RKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVH 248 (408)
T ss_pred ccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCce
Confidence 2 35699999999987 5689999999999999999999999999999999999999988899999999999999
Q ss_pred ecHHHHHHHhhc-CCCCCeEEEEeeCCCCcccCCCCCcccchhhh----cCCCCCCcccC
Q 008190 518 VRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWYISNEVS----VSIKNHSVDDH 572 (574)
Q Consensus 518 Vnvd~Ll~~L~~-~~~~~ly~G~v~~~~~PiRdp~sKWyVS~eeY----P~~t~~~~~~~ 572 (574)
||+++|+.+|.+ ...+++|+|++.. .|+|++.++||++++.| |..+|+++.+|
T Consensus 249 Vnv~~L~~~L~~~~~~~rlYiG~m~~--gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG 306 (408)
T PLN03193 249 VNIATLGETLVRHRKKPRVYIGCMKS--GPVLSQKGVRYHEPEYWKFGENGNKYFRHATG 306 (408)
T ss_pred EcHHHHHHHHHhcCCCCCEEEEeccc--CccccCCCCcCcCcccccccCccccCCCCCCc
Confidence 999999999987 4445799999976 48999888899998888 67889988776
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.3e-33 Score=272.22 Aligned_cols=145 Identities=34% Similarity=0.481 Sum_probs=135.0
Q ss_pred HHHHHHHHHhcCCCCcCCCCeEEEEEeeccC--ChhhhHHHHHHHhhcCCeEEeecccccCchhHHHHHHHHHH-hcCCC
Q 008190 429 ERRMALRRSWMQYPAVRSGDLAVRFFIGLHK--NRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFG-TKILP 505 (574)
Q Consensus 429 eRR~aIReTWg~~~~v~~~~V~v~FvVG~~~--n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl~~l~wa-~~c~~ 505 (574)
+||++||+|||+.....+.+++++||+|.+. +..++..|++|+++|+||||+||.|+|+|+|+||+++++|+ .+|++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999998877778999999999998 67788889999999999999999999999999999999998 56888
Q ss_pred CcEEEEeCCceeecHHHHHHHhhcC---CCCCeEEEEeeCCCCcccCCCCCcccchhhhcCCCCCCcccCC
Q 008190 506 AKYIMKTDDDAFVRIDEVLSNLKEK---PSNGLLFGLMSYDSSPQRDKDSKWYISNEVSVSIKNHSVDDHW 573 (574)
Q Consensus 506 akfVmK~DDDtFVnvd~Ll~~L~~~---~~~~ly~G~v~~~~~PiRdp~sKWyVS~eeYP~~t~~~~~~~~ 573 (574)
++||+|+|||+|||+++|.++|... ..+..++|.+..+.+|+|++.+|||||+++||...|+++.+|.
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~ 151 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGG 151 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCC
Confidence 9999999999999999999999985 5667899999998999999999999999999999999998874
No 5
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.98 E-value=6.1e-32 Score=246.35 Aligned_cols=128 Identities=36% Similarity=0.512 Sum_probs=118.5
Q ss_pred eeEeeCCCCCCCcEEEEEEEeCCCCCceEEEeccCCCCCCCCCCeEEEEeeecCCCCCCCCCEEEEcCccCCCCccccee
Q 008190 182 LIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKEER 261 (574)
Q Consensus 182 ~~~~lPcGL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LHfNpRf~~d~~~~~pvIv~NS~~~~~~WG~EeR 261 (574)
|+..||+||.+|++|+|+|+|..++++|.|||+++ .++++|||||||+++ +|||||+.+ |.||.|||
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~------~~di~lH~n~rf~~~------~iV~Ns~~~-g~Wg~Eer 67 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTG------GDDIALHFNPRFNEN------KIVCNSKLN-GSWGSEER 67 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCCCEEEEEeecC------CCCEEEEEeccCCCC------EEEEeCccC-CccchheE
Confidence 45789999999999999999999999999999983 368999999999874 899999997 89999999
Q ss_pred cCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhcccccCCCCCCCCCCCCCCcEEEEE
Q 008190 262 CPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTTTI 341 (574)
Q Consensus 262 c~~~~s~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti 341 (574)
+ ..|||++|++|+|+|
T Consensus 68 ~----------------------------------------------------------------~~~Pf~~g~~F~l~i 83 (128)
T smart00276 68 E----------------------------------------------------------------GGFPFQPGQPFDLTI 83 (128)
T ss_pred c----------------------------------------------------------------CCCCCCCCCEEEEEE
Confidence 8 369999999999999
Q ss_pred EEcCCeEEEEeCCeeeEEeeccccCCCCceeEEEEeCceeeeeeccc
Q 008190 342 WVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAE 388 (574)
Q Consensus 342 ~~g~egf~v~VnG~H~tsF~yR~~l~p~~v~~l~I~GDv~l~sv~~~ 388 (574)
.++.++|+|+|||+|+++|+||.++ ..|+.|.|.||+.|++|.++
T Consensus 84 ~~~~~~f~i~vng~~~~~f~~R~~~--~~i~~l~v~Gdv~l~~v~~~ 128 (128)
T smart00276 84 IVQPDHFQIFVNGVHITTFPHRLPL--ESIDYLSINGDVQLTSVSFE 128 (128)
T ss_pred EEcCCEEEEEECCEeEEEecCCCCc--ccEeEEEEeCCEEEEEEEEC
Confidence 9999999999999999999999765 59999999999999999863
No 6
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.97 E-value=6.7e-31 Score=239.32 Aligned_cols=133 Identities=34% Similarity=0.528 Sum_probs=119.9
Q ss_pred CeeEeeCCCCCCCcEEEEEEEeCCCCCceEEEeccCCCCCCCCCCeEEEEeeecCCCCCCCCCEEEEcCccCCCCcccce
Q 008190 181 RLIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKEE 260 (574)
Q Consensus 181 ~~~~~lPcGL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LHfNpRf~~d~~~~~pvIv~NS~~~~~~WG~Ee 260 (574)
+|++.||+||.+|++|+|.|++..++++|.|||++++ .++.++++|||||||++. .+||+||+.+ |.||.||
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~--~~~~~~i~lH~~~rf~~~-----~~iv~Ns~~~-g~Wg~Ee 72 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGP--NDPDDDIALHFNPRFDEQ-----NVIVRNSRIN-GKWGQEE 72 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES---STTTTEEEEEEEEECTTE-----EEEEEEEEET-TEE-SEE
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCC--cCCCCCEEEEEEEEeCCC-----ceEEEeceEC-CEeccce
Confidence 5889999999999999999999999999999999964 235789999999999982 3899999997 8899999
Q ss_pred ecCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhcccccCCCCCCCCCCCCCCcEEEE
Q 008190 261 RCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTTT 340 (574)
Q Consensus 261 Rc~~~~s~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lt 340 (574)
|+ ..|||.+|++|+|+
T Consensus 73 ~~----------------------------------------------------------------~~~pf~~g~~F~i~ 88 (133)
T PF00337_consen 73 RE----------------------------------------------------------------SPFPFQPGQPFEIR 88 (133)
T ss_dssp EE----------------------------------------------------------------SSTSSTTTSEEEEE
T ss_pred ee----------------------------------------------------------------eeeeecCCceEEEE
Confidence 96 36999999999999
Q ss_pred EEEcCCeEEEEeCCeeeEEeeccccCCCCceeEEEEeCceeeeeecc
Q 008190 341 IWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFA 387 (574)
Q Consensus 341 i~~g~egf~v~VnG~H~tsF~yR~~l~p~~v~~l~I~GDv~l~sv~~ 387 (574)
|.++.++|+|+|||+|+++|+||.++ +.|++|.|.|||+|+||++
T Consensus 89 I~~~~~~f~I~vng~~~~~F~~R~~~--~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 89 IRVEEDGFKIYVNGKHFCSFPHRLPL--SSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp EEEESSEEEEEETTEEEEEEE-SSCG--GGEEEEEEEESEEEEEEEE
T ss_pred EEEecCeeEEEECCeEEEEeeCcCCH--HHcCEEEEECCEEEEEEEC
Confidence 99999999999999999999999665 6999999999999999975
No 7
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.97 E-value=1.2e-30 Score=237.07 Aligned_cols=126 Identities=36% Similarity=0.513 Sum_probs=117.2
Q ss_pred eeEeeCCCCCCCcEEEEEEEeCCCCCceEEEeccCCCCCCCCCCeEEEEeeecCCCCCCCCCEEEEcCccCCCCccccee
Q 008190 182 LIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKEER 261 (574)
Q Consensus 182 ~~~~lPcGL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LHfNpRf~~d~~~~~pvIv~NS~~~~~~WG~EeR 261 (574)
|...|||||.+|++|+|.|+|..++++|.|||+++ ..+++|||||||.++ +||+||+.+ |.||.|||
T Consensus 2 ~~~~l~~~l~~G~~i~i~G~~~~~~~~f~Inl~~~------~~~i~lH~n~rf~~~------~IV~Ns~~~-g~Wg~Eer 68 (127)
T cd00070 2 YKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTG------SSDIALHFNPRFDEN------VIVRNSFLN-GNWGPEER 68 (127)
T ss_pred cccccCCCCcCCCEEEEEEEECCCCCEEEEEEecC------CCCEEEEEeeeCCCC------EEEEcCCCC-CEecHhhc
Confidence 56789999999999999999999999999999983 338999999999974 899999997 89999999
Q ss_pred cCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhcccccCCCCCCCCCCCCCCcEEEEE
Q 008190 262 CPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTTTI 341 (574)
Q Consensus 262 c~~~~s~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti 341 (574)
+. .|||.+|++|+|+|
T Consensus 69 ~~----------------------------------------------------------------~~pf~~g~~F~l~i 84 (127)
T cd00070 69 SG----------------------------------------------------------------GFPFQPGQPFELTI 84 (127)
T ss_pred cC----------------------------------------------------------------CCCCCCCCeEEEEE
Confidence 83 69999999999999
Q ss_pred EEcCCeEEEEeCCeeeEEeeccccCCCCceeEEEEeCceeeeeec
Q 008190 342 WVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAF 386 (574)
Q Consensus 342 ~~g~egf~v~VnG~H~tsF~yR~~l~p~~v~~l~I~GDv~l~sv~ 386 (574)
.++.++|+|.|||+|+++|+||.++ ++|+.|.|.||+.|++|.
T Consensus 85 ~~~~~~f~i~vng~~~~~F~~R~~~--~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 85 LVEEDKFQIFVNGQHFFSFPHRLPL--ESIDYLSINGDVSLTSVE 127 (127)
T ss_pred EEcCCEEEEEECCEeEEEecCcCCh--hhEEEEEEeCCEEEEEeC
Confidence 9999999999999999999999765 799999999999999874
No 8
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.94 E-value=4.7e-26 Score=212.34 Aligned_cols=136 Identities=29% Similarity=0.389 Sum_probs=122.7
Q ss_pred CeeEeeCCCCCCCcEEEEEEEeCCC-CCceEEEeccCCCCCCCCCCeEEEEeeecCCCCCCCCCEEEEcCccCCCCcccc
Q 008190 181 RLIIEVPCGLVEDSSITLVGIPDGR-YGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKE 259 (574)
Q Consensus 181 ~~~~~lPcGL~~Gs~ItV~G~p~~~-~~~F~I~L~~~~~~~~~~~~i~LHfNpRf~~d~~~~~pvIv~NS~~~~~~WG~E 259 (574)
++...+++||.+|+.+++.|.+... .++|.+++..+..... +.+|+|||||||+++ .|||||+.+ |.||.|
T Consensus 5 p~~~~~~~~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~dia~Hfnprf~~~------~VVrNs~~~-g~Wg~e 76 (143)
T KOG3587|consen 5 PFPVPIPSGLPPGSQVTIKGLVLYGIPKRFAVNLRFGTNLDS-DSDIALHFNPRFDEK------GVVRNSLIN-GEWGLE 76 (143)
T ss_pred ccccccccCcCCCcEEEEEEEEcccCCCcceeeeEeecccCC-CCcEEEEEeccCCCC------eEEEecccC-CccCch
Confidence 5677889999999999999999865 7899999998766555 667999999999986 499999986 999999
Q ss_pred eecCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCchhhhcccccCCCCCCCCCCCCCCcEEE
Q 008190 260 ERCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTT 339 (574)
Q Consensus 260 eRc~~~~s~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l 339 (574)
||+. .+||+.|++|.|
T Consensus 77 E~~~----------------------------------------------------------------~~PF~~g~~F~l 92 (143)
T KOG3587|consen 77 EREG----------------------------------------------------------------GNPFQPGQPFDL 92 (143)
T ss_pred hhcC----------------------------------------------------------------CCCCCCCCeEEE
Confidence 9983 799999999999
Q ss_pred EEEEcCCeEEEEeCCeeeEEeeccccCCCCceeEEEEeCceeeeeecccCC
Q 008190 340 TIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEGL 390 (574)
Q Consensus 340 ti~~g~egf~v~VnG~H~tsF~yR~~l~p~~v~~l~I~GDv~l~sv~~~gl 390 (574)
+|.++.+.|+|.|||.|+++|.||.+. ..|..|.|.||+.|.+|.+...
T Consensus 93 ~I~~~~~~~~I~VNg~~f~~y~HR~p~--~~v~~l~i~Gdv~i~~i~~~~~ 141 (143)
T KOG3587|consen 93 TILVEEDKFQIFVNGVHFADYPHRIPP--SSVQTLQINGDVQITSIEFSNF 141 (143)
T ss_pred EEEEccCeEEEEECCEEEEeecCCCCC--hheeEEEEeeeEEEEEEEEEcc
Confidence 999999999999999999999999764 5999999999999999998753
No 9
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.94 E-value=2e-26 Score=241.52 Aligned_cols=139 Identities=28% Similarity=0.440 Sum_probs=129.1
Q ss_pred CCCeeEEEEEeCCcCC--HHHHHHHHHHhcCCCCcC------CCCeEEEEEeeccCCh--hhhHHHHHHHhhcCCeEEee
Q 008190 412 RKRLVMLIGVFSTGNN--FERRMALRRSWMQYPAVR------SGDLAVRFFIGLHKNR--QVNFELWKEAQAYGDIQIMP 481 (574)
Q Consensus 412 ~~~~~LLI~V~Sap~n--feRR~aIReTWg~~~~v~------~~~V~v~FvVG~~~n~--~~~~~L~eEae~ygDIL~ld 481 (574)
.++..+++||.|..++ +.||++.|+||+++..+. .+.+.++||+|.+++. +++++|++|+++|||||++|
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp 156 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP 156 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe
Confidence 5789999999999999 999999999999998876 6789999999999987 89999999999999999999
Q ss_pred c------------------ccccCchhHHHHHHHHHH-hcCCCCcEEEEeCCceeecHHHHHHHhhcCCCCCeEEEEeeC
Q 008190 482 F------------------VDYYSLISLKTIAICIFG-TKILPAKYIMKTDDDAFVRIDEVLSNLKEKPSNGLLFGLMSY 542 (574)
Q Consensus 482 F------------------~DsY~NLTlKTl~~l~wa-~~c~~akfVmK~DDDtFVnvd~Ll~~L~~~~~~~ly~G~v~~ 542 (574)
| .|+|.|+|+||+++|+|+ ..||+++||||+|||+|||+++++++|+..+++++|+|++..
T Consensus 157 f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~prr~LY~G~v~~ 236 (382)
T PTZ00210 157 TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVMPRHGLYMGRYNY 236 (382)
T ss_pred cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhCCCCceEEEeeCC
Confidence 9 667778999999999998 468899999999999999999999999888888899999999
Q ss_pred CCCcccCC
Q 008190 543 DSSPQRDK 550 (574)
Q Consensus 543 ~~~PiRdp 550 (574)
...|.|++
T Consensus 237 ~~~p~Rd~ 244 (382)
T PTZ00210 237 YNRIWRRN 244 (382)
T ss_pred CCccccCC
Confidence 88899985
No 10
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.91 E-value=3.5e-24 Score=213.97 Aligned_cols=152 Identities=24% Similarity=0.376 Sum_probs=134.0
Q ss_pred CCCeeEEEEEeCCcCCHHHHHHHHHHhcCCC-----CcCCCCeEEEEEeec-cCChhhhHHHHHHHhhcCCeEEee-ccc
Q 008190 412 RKRLVMLIGVFSTGNNFERRMALRRSWMQYP-----AVRSGDLAVRFFIGL-HKNRQVNFELWKEAQAYGDIQIMP-FVD 484 (574)
Q Consensus 412 ~~~~~LLI~V~Sap~nfeRR~aIReTWg~~~-----~v~~~~V~v~FvVG~-~~n~~~~~~L~eEae~ygDIL~ld-F~D 484 (574)
.++++++|+|.|+++..+||+.+|+||+... .-....+.++|++|. ......+.+|++|.++|+|.+++| ..|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 5689999999999999999999999999862 223578999999999 556789999999999999999999 999
Q ss_pred ccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc-CCCCCeEEEEeeCCCCcccCCCCCcccchhhhcC
Q 008190 485 YYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWYISNEVSVS 563 (574)
Q Consensus 485 sY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~-~~~~~ly~G~v~~~~~PiRdp~sKWyVS~eeYP~ 563 (574)
.|.+|+.||++.|.+|....+++|++|+|||+|||++.|...|.+ ....++|+|++..+ +++-.|++|||-|+ |--
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg-~v~~~~~~kw~Epe--Wkf 164 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSG-PVLTQPGGKWYEPE--WKF 164 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCC-ccccCCCCcccChh--hhc
Confidence 999999999999999988899999999999999999999999998 44478999999976 55566789999998 444
Q ss_pred CCC
Q 008190 564 IKN 566 (574)
Q Consensus 564 ~t~ 566 (574)
+.+
T Consensus 165 g~~ 167 (274)
T KOG2288|consen 165 GDN 167 (274)
T ss_pred Ccc
Confidence 443
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=98.86 E-value=2.9e-09 Score=108.17 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=66.2
Q ss_pred eeEEEEEeCCcCCHHHH-HHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHH
Q 008190 415 LVMLIGVFSTGNNFERR-MALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (574)
Q Consensus 415 ~~LLI~V~Sap~nfeRR-~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKT 493 (574)
-+|+|+|+|++.+.+.| .+|++||++... ...|+.....+..+. .+ .-.+++..+....+...+++.
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~------~~~~ifsd~~d~~l~----~~--~~~~l~~~~~~~~~~~~~~~~ 73 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN------KQTFIFSDAEDPSLP----TV--TGVHLVNPNCDAGHCRKTLSC 73 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG------GGEEEEESS--HHHH----HH--HGGGEEE-------------H
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC------CceEEecCccccccc----cc--cccccccCCCcchhhHHHHHH
Confidence 36899999999877766 799999999643 224543333333222 22 344566666655555555555
Q ss_pred HHHHHHH-hcCCCCcEEEEeCCceeecHHHHHHHhhc-CCCCCeEEEEeeCC
Q 008190 494 IAICIFG-TKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYD 543 (574)
Q Consensus 494 l~~l~wa-~~c~~akfVmK~DDDtFVnvd~Ll~~L~~-~~~~~ly~G~v~~~ 543 (574)
++.+.+. ...++.+|++++|||+||++++|+++|.. ++.+..|+|.....
T Consensus 74 ~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~ 125 (252)
T PF02434_consen 74 KMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGD 125 (252)
T ss_dssp HHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE--
T ss_pred HHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccC
Confidence 5555553 23358899999999999999999999999 88889999998754
No 12
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.49 E-value=3.1e-07 Score=98.34 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=90.5
Q ss_pred CCCeeEEEEEeCCcCCHHHHH-HHHHHhcCCCCcCCCCeEEEEEe---eccCChhhhHHHHHHHhhcCCeEEeecccccC
Q 008190 412 RKRLVMLIGVFSTGNNFERRM-ALRRSWMQYPAVRSGDLAVRFFI---GLHKNRQVNFELWKEAQAYGDIQIMPFVDYYS 487 (574)
Q Consensus 412 ~~~~~LLI~V~Sap~nfeRR~-aIReTWg~~~~v~~~~V~v~FvV---G~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~ 487 (574)
..+..+++.|+|++.+...|. .+=+||++.+. +..|+- .+... .|. .|..+..|+|+
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------~~~f~s~~~s~~~~------------~f~-~v~~~~~~g~~ 148 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------KGIFFSPTLSKDDS------------RFP-TVYYNLPDGYR 148 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccC------cceecCccCCCCCC------------cCc-eeeccCCcchH
Confidence 467899999999998888775 89999998543 445554 33221 122 23688899999
Q ss_pred chhHHHHHHHHHHh--cCCCCcEEEEeCCceeecHHHHHHHhhc-CCCCCeEEEEeeC
Q 008190 488 LISLKTIAICIFGT--KILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSY 542 (574)
Q Consensus 488 NLTlKTl~~l~wa~--~c~~akfVmK~DDDtFVnvd~Ll~~L~~-~~~~~ly~G~v~~ 542 (574)
++..||..++++.. .-.+++|++|+|||||+.+++|...|.+ ++.+..|+|+...
T Consensus 149 ~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~ 206 (364)
T KOG2246|consen 149 SLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK 206 (364)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc
Confidence 99999999999874 3458999999999999999999999999 8999999999764
No 13
>PLN03153 hypothetical protein; Provisional
Probab=96.13 E-value=0.021 Score=63.86 Aligned_cols=118 Identities=17% Similarity=0.230 Sum_probs=69.7
Q ss_pred CCCeeEEEEEeCCcCCH-HHHHHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccc----c
Q 008190 412 RKRLVMLIGVFSTGNNF-ERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDY----Y 486 (574)
Q Consensus 412 ~~~~~LLI~V~Sap~nf-eRR~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~Ds----Y 486 (574)
..--.++++|.++.+.- +|+..|+.+|..... + ..+|+.....+.. +...---| .+. .|+ |
T Consensus 119 t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~-r----g~v~ld~~~~~~~-------~~~~~P~i-~is-~d~s~f~y 184 (537)
T PLN03153 119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM-R----GHVWLEEQVSPEE-------GDDSLPPI-MVS-EDTSRFRY 184 (537)
T ss_pred CccccEEEEEEEchhhhhhhhhhhhhhcCcccc-e----eEEEecccCCCCC-------CcCCCCCE-EeC-CCcccccc
Confidence 34557888888887766 555889999986321 1 2345444332210 00000111 111 111 3
Q ss_pred Cc---h-hHHHH-HHHHHH--hcCCCCcEEEEeCCceeecHHHHHHHhhc-CCCCCeEEEEeeCC
Q 008190 487 SL---I-SLKTI-AICIFG--TKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYD 543 (574)
Q Consensus 487 ~N---L-TlKTl-~~l~wa--~~c~~akfVmK~DDDtFVnvd~Ll~~L~~-~~~~~ly~G~v~~~ 543 (574)
.| . +..-+ -+...+ ...++++|++++|||||+.+++|++.|.. ++.+..|+|.....
T Consensus 185 ~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~ 249 (537)
T PLN03153 185 TNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSES 249 (537)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccc
Confidence 33 1 11111 112222 34689999999999999999999999999 88889999966543
No 14
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=79.86 E-value=41 Score=29.44 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=58.0
Q ss_pred EEEEEeCCcCCHHHH-HHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHHHH
Q 008190 417 MLIGVFSTGNNFERR-MALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIA 495 (574)
Q Consensus 417 LLI~V~Sap~nfeRR-~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl~ 495 (574)
++|.+.-.+....+- ..+++. . ...+.++++-..+ +++..+.+++-.+....|..+...++. .+. .
T Consensus 2 vvip~~n~~~~l~~~l~sl~~q--~-----~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~----~ 68 (169)
T PF00535_consen 2 VVIPTYNEAEYLERTLESLLKQ--T-----DPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-GFS----A 68 (169)
T ss_dssp EEEEESS-TTTHHHHHHHHHHH--S-----GCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHH----H
T ss_pred EEEEeeCCHHHHHHHHHHHhhc--c-----CCCEEEEEecccc-ccccccccccccccccccccccccccc-ccc----c
Confidence 344444455555544 346666 1 1345665555555 334444455544446666666655543 222 2
Q ss_pred HHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc--CCCCCeEEEEee
Q 008190 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMS 541 (574)
Q Consensus 496 ~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~--~~~~~ly~G~v~ 541 (574)
++..+......+|++.+|||.++..+.|...+.. ......++|...
T Consensus 69 ~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 69 ARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred cccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 2233333345669999999999987766555554 223445555544
No 15
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.67 E-value=6 Score=44.84 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=66.9
Q ss_pred CeeEEEEEeCCcCCHHHHHHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHH
Q 008190 414 RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (574)
Q Consensus 414 ~~~LLI~V~Sap~nfeRR~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKT 493 (574)
+-.|+++|+|.. .---+|-+|-+..- -++.||.+...-. .|.-++..+-.|..-..|+
T Consensus 25 RErl~~aVmte~---tlA~a~NrT~ahhv------prv~~F~~~~~i~-------------~~~a~~~~vs~~d~r~~~~ 82 (681)
T KOG3708|consen 25 RERLMAAVMTES---TLALAINRTLAHHV------PRVHLFADSSRID-------------NDLAQLTNVSPYDLRGQKT 82 (681)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhc------ceeEEeecccccc-------------ccHhhccccCccccCcccc
Confidence 345677777722 45567777777642 3677888765432 1222333333343333444
Q ss_pred H-HHHHHH--hcCCCCcEEEEeCCceeecHHHHHHHhhc-CCCCCeEEEE
Q 008190 494 I-AICIFG--TKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGL 539 (574)
Q Consensus 494 l-~~l~wa--~~c~~akfVmK~DDDtFVnvd~Ll~~L~~-~~~~~ly~G~ 539 (574)
. +.+.+. ...-+++|++-+-||+|||...|++.+.. .-..++|+|.
T Consensus 83 ~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGE 132 (681)
T KOG3708|consen 83 HSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGE 132 (681)
T ss_pred HHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccch
Confidence 3 233443 34558999999999999999999999998 6677899884
No 16
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=64.37 E-value=53 Score=30.67 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=48.0
Q ss_pred eEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHHhh
Q 008190 449 LAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLK 528 (574)
Q Consensus 449 V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~ 528 (574)
..++++.-.+.++.+...+++-.+.+. |..+-...+.. + -.++..+....+.+|++..|+|.++..+.|...+.
T Consensus 30 ~eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~n~G----~-~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~ 103 (201)
T cd04195 30 DEVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEKNRG----L-GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLD 103 (201)
T ss_pred cEEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCcccc----H-HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHH
Confidence 455444333324445444555555666 55443333211 1 12344554445789999999999998887777666
Q ss_pred c---CCCCCeEEEEe
Q 008190 529 E---KPSNGLLFGLM 540 (574)
Q Consensus 529 ~---~~~~~ly~G~v 540 (574)
. .+.-.++.|.+
T Consensus 104 ~~~~~~~~~~~~~~~ 118 (201)
T cd04195 104 FIEKNPEIDIVGGGV 118 (201)
T ss_pred HHHhCCCeEEEcccE
Confidence 5 33334555544
No 17
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=62.16 E-value=1.8e+02 Score=31.17 Aligned_cols=107 Identities=10% Similarity=-0.035 Sum_probs=58.6
Q ss_pred eEEEEEeCCcCCHHHHHHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcCC--eEEeecccccCchhHHH
Q 008190 416 VMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGD--IQIMPFVDYYSLISLKT 493 (574)
Q Consensus 416 ~LLI~V~Sap~nfeRR~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~ygD--IL~ldF~DsY~NLTlKT 493 (574)
.+-|+|...-+...-.+.|+. ..++.. ..+.++|+...+++... +.+++-.+.|.+ |..+.- +.-.....|.
T Consensus 42 ~VSViiP~~nee~~l~~~L~S-l~~q~Y---p~~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~~-~~~~G~~~K~ 115 (373)
T TIGR03472 42 PVSVLKPLHGDEPELYENLAS-FCRQDY---PGFQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVID-ARRHGPNRKV 115 (373)
T ss_pred CeEEEEECCCCChhHHHHHHH-HHhcCC---CCeEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEEC-CCCCCCChHH
Confidence 344445444333334455653 333332 23777777766655432 334444566776 433311 1111223455
Q ss_pred HHHHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc
Q 008190 494 IAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (574)
Q Consensus 494 l~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~ 529 (574)
-+..+ +....+.+|++.+|+|+.+..+.|...+..
T Consensus 116 ~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~ 150 (373)
T TIGR03472 116 SNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAP 150 (373)
T ss_pred HHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHH
Confidence 44333 333458999999999999998888777665
No 18
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=61.48 E-value=68 Score=27.92 Aligned_cols=92 Identities=12% Similarity=-0.009 Sum_probs=47.6
Q ss_pred HHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcCC-eEEeecccccCchhHHHHHHHHHHhcCCCCcEEE
Q 008190 432 MALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGD-IQIMPFVDYYSLISLKTIAICIFGTKILPAKYIM 510 (574)
Q Consensus 432 ~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~ygD-IL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVm 510 (574)
..|+++-.+........+.++++-..+.+. ....+.++...+.. ++..... .|.. ...++.++....+.+|++
T Consensus 10 ~~l~~~l~sl~~q~~~~~~iivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~---~~~g--~~~~~n~~~~~~~~~~i~ 83 (180)
T cd06423 10 AVIERTIESLLALDYPKLEVIVVDDGSTDD-TLEILEELAALYIRRVLVVRDK---ENGG--KAGALNAGLRHAKGDIVV 83 (180)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEeCCCccc-hHHHHHHHhccccceEEEEEec---ccCC--chHHHHHHHHhcCCCEEE
Confidence 455555543221111345555555544443 33445555444422 2222221 1211 123344554455899999
Q ss_pred EeCCceeecHHHHHHHhhc
Q 008190 511 KTDDDAFVRIDEVLSNLKE 529 (574)
Q Consensus 511 K~DDDtFVnvd~Ll~~L~~ 529 (574)
.+|+|.++..+.|...+..
T Consensus 84 ~~D~D~~~~~~~l~~~~~~ 102 (180)
T cd06423 84 VLDADTILEPDALKRLVVP 102 (180)
T ss_pred EECCCCCcChHHHHHHHHH
Confidence 9999999987777666444
No 19
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=58.80 E-value=1.6e+02 Score=27.71 Aligned_cols=88 Identities=20% Similarity=0.106 Sum_probs=49.3
Q ss_pred eEEEEEeeccCChhhhHHHHHHHhh--cCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHH
Q 008190 449 LAVRFFIGLHKNRQVNFELWKEAQA--YGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (574)
Q Consensus 449 V~v~FvVG~~~n~~~~~~L~eEae~--ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~ 526 (574)
+.++.+-..+.+. ..+.++ +... +..+..+.... -.|. -|. .++.++......+|++.+|+|..+..+.|...
T Consensus 29 ~eiivvdd~s~d~-t~~~~~-~~~~~~~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l 103 (229)
T cd04192 29 FEVILVDDHSTDG-TVQILE-FAAAKPNFQLKILNNSR-VSIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLTF 103 (229)
T ss_pred eEEEEEcCCCCcC-hHHHHH-HHHhCCCcceEEeeccC-cccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHHH
Confidence 5666665554443 333344 2333 33455555443 2222 222 23455544567899999999999988877777
Q ss_pred hhc--CCCCCeEEEEee
Q 008190 527 LKE--KPSNGLLFGLMS 541 (574)
Q Consensus 527 L~~--~~~~~ly~G~v~ 541 (574)
+.. ......+.|...
T Consensus 104 ~~~~~~~~~~~v~~~~~ 120 (229)
T cd04192 104 VAFIQKEQIGLVAGPVI 120 (229)
T ss_pred HHHhhcCCCcEEeeeee
Confidence 764 333445566544
No 20
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=57.34 E-value=1.8e+02 Score=27.79 Aligned_cols=87 Identities=14% Similarity=0.057 Sum_probs=49.5
Q ss_pred CCeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHH
Q 008190 447 GDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (574)
Q Consensus 447 ~~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~ 526 (574)
..+.++.+-+.+.++ ....++...+.+..+....-... . + -.++..+....+.+|++.+|||..+..+.|...
T Consensus 30 ~~~evivvd~~s~d~-~~~~~~~~~~~~~~v~~i~~~~~----~-~-~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~ 102 (249)
T cd02525 30 DLIEIIVVDGGSTDG-TREIVQEYAAKDPRIRLIDNPKR----I-Q-SAGLNIGIRNSRGDIIIRVDAHAVYPKDYILEL 102 (249)
T ss_pred CccEEEEEeCCCCcc-HHHHHHHHHhcCCeEEEEeCCCC----C-c-hHHHHHHHHHhCCCEEEEECCCccCCHHHHHHH
Confidence 356677666555543 34445555555444544432211 1 1 124455544458899999999999987777776
Q ss_pred hhc--CCCCCeEEEEe
Q 008190 527 LKE--KPSNGLLFGLM 540 (574)
Q Consensus 527 L~~--~~~~~ly~G~v 540 (574)
+.. .+......|..
T Consensus 103 ~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 103 VEALKRTGADNVGGPM 118 (249)
T ss_pred HHHHhcCCCCEEecce
Confidence 654 33333444544
No 21
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=57.18 E-value=41 Score=32.19 Aligned_cols=116 Identities=16% Similarity=0.040 Sum_probs=55.7
Q ss_pred EEEEEeCCcCCHHHHHHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcCCe--EEeecccccCch--hHH
Q 008190 417 MLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDI--QIMPFVDYYSLI--SLK 492 (574)
Q Consensus 417 LLI~V~Sap~nfeRR~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~ygDI--L~ldF~DsY~NL--TlK 492 (574)
+.|+|.+.-..-.-++.|+.--.+. . ..+.++++...+.. ...+.+++-.+.|.++ ..+... .|. +.|
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~-~---~~~~v~vvd~~~~~-~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~k 74 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQD-Y---PRLEVVVVDDGSDD-ETAEILRALAARYPRVRVRVIRRP---RNPGPGGK 74 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSH-H---HTEEEEEEEE-SSS--GCTTHHHHHHTTGG-GEEEEE-------HHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCC-C---CCeEEEEEECCCCh-HHHHHHHHHHHHcCCCceEEeecC---CCCCcchH
Confidence 4555555544445555665555431 1 34666666644433 3334466666667653 322221 222 234
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc--CCCCCeEEEEee
Q 008190 493 TIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMS 541 (574)
Q Consensus 493 Tl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~--~~~~~ly~G~v~ 541 (574)
.- ++.++......+|++.+|||+.+..+.|...+.. .+.-..+.|.+.
T Consensus 75 ~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~ 124 (228)
T PF13641_consen 75 AR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVF 124 (228)
T ss_dssp HH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEE
T ss_pred HH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEe
Confidence 33 3345433346999999999999988877776665 444455555554
No 22
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=56.17 E-value=92 Score=28.75 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=52.8
Q ss_pred CeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHHh
Q 008190 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (574)
Q Consensus 448 ~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L 527 (574)
.+.++.+-..+.+. ....++....++..+..+....++. | -.++..+..+...+|++.+|+|.....+.|...+
T Consensus 29 ~~eiivvdd~s~d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDR-TLEILRELAARDPRVKVIRLSRNFG----Q-QAALLAGLDHARGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCcc-HHHHHHHHHhhCCCEEEEEecCCCC----c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 45666665555443 3334555555676676655543322 1 1233444444567999999999999877666666
Q ss_pred hc-CCCCCeEEEEeeC
Q 008190 528 KE-KPSNGLLFGLMSY 542 (574)
Q Consensus 528 ~~-~~~~~ly~G~v~~ 542 (574)
.. .......+|....
T Consensus 103 ~~~~~~~~~v~g~~~~ 118 (181)
T cd04187 103 AKWEEGYDVVYGVRKN 118 (181)
T ss_pred HHHhCCCcEEEEEecC
Confidence 65 3344566776543
No 23
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=53.95 E-value=87 Score=28.65 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=53.8
Q ss_pred CeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHHh
Q 008190 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (574)
Q Consensus 448 ~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L 527 (574)
...++.+-..+.+ .....+++....+..+..+....+.. | -.++..+..+...+|++..|+|..+..+.|.+.+
T Consensus 28 ~~eiivvd~~s~d-~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~ 101 (185)
T cd04179 28 DYEIIVVDDGSTD-GTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLL 101 (185)
T ss_pred CEEEEEEcCCCCC-ChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence 3454454444433 34445556666677766555544432 1 1233444444556999999999999988888777
Q ss_pred hc--CCCCCeEEEEeeC
Q 008190 528 KE--KPSNGLLFGLMSY 542 (574)
Q Consensus 528 ~~--~~~~~ly~G~v~~ 542 (574)
.. .......+|....
T Consensus 102 ~~~~~~~~~~v~g~~~~ 118 (185)
T cd04179 102 EKLLEGGADVVIGSRFV 118 (185)
T ss_pred HHHhccCCcEEEEEeec
Confidence 74 3445677776543
No 24
>PRK11204 N-glycosyltransferase; Provisional
Probab=53.76 E-value=2.1e+02 Score=30.68 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=47.5
Q ss_pred eEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHHhh
Q 008190 449 LAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLK 528 (574)
Q Consensus 449 V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~ 528 (574)
..++ |+....++...+.+++..+.|..+......+ |.. |. .++..+....+.+|++..|+|+.+..+.|.+.++
T Consensus 84 ~eii-VvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~---n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~ 157 (420)
T PRK11204 84 YEVI-AINDGSSDNTGEILDRLAAQIPRLRVIHLAE---NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVE 157 (420)
T ss_pred eEEE-EEECCCCccHHHHHHHHHHhCCcEEEEEcCC---CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHH
Confidence 4443 4444333445555666677777776665433 322 32 2345554456889999999999999888777666
Q ss_pred c
Q 008190 529 E 529 (574)
Q Consensus 529 ~ 529 (574)
.
T Consensus 158 ~ 158 (420)
T PRK11204 158 H 158 (420)
T ss_pred H
Confidence 5
No 25
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=51.48 E-value=2.3e+02 Score=27.14 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=44.6
Q ss_pred CeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHHh
Q 008190 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (574)
Q Consensus 448 ~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L 527 (574)
...++++...+.++ ....| ++...+..+.+..- +. .-|.- ++..+......+|++.+|+|+.+..+.|.+.+
T Consensus 28 ~~eiivvdd~s~d~-~~~~l-~~~~~~~~~~v~~~-~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 28 PLEIIVVTDGDDEP-YLSIL-SQTVKYGGIFVITV-PH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred CCEEEEEeCCCChH-HHHHH-HhhccCCcEEEEec-CC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHHH
Confidence 35566665554443 33323 34556777666542 21 12332 23334344589999999999999999887777
Q ss_pred hc
Q 008190 528 KE 529 (574)
Q Consensus 528 ~~ 529 (574)
..
T Consensus 100 ~~ 101 (235)
T cd06434 100 KP 101 (235)
T ss_pred Hh
Confidence 66
No 26
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=48.65 E-value=73 Score=30.71 Aligned_cols=78 Identities=14% Similarity=0.043 Sum_probs=44.3
Q ss_pred CeEEEEEeeccCChhhhHHHHHHHhhcC-CeEEeecccccCchhHHHHHHHHHHhcC--CCCcEEEEeCCceeecHHHHH
Q 008190 448 DLAVRFFIGLHKNRQVNFELWKEAQAYG-DIQIMPFVDYYSLISLKTIAICIFGTKI--LPAKYIMKTDDDAFVRIDEVL 524 (574)
Q Consensus 448 ~V~v~FvVG~~~n~~~~~~L~eEae~yg-DIL~ldF~DsY~NLTlKTl~~l~wa~~c--~~akfVmK~DDDtFVnvd~Ll 524 (574)
.+.++++-+.+.+......+++=.++++ ++..+... .|.-.| ..++.++... .+.+|++..|+|+.+..+.|.
T Consensus 28 ~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~---~~~G~~-~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~ 103 (236)
T cd06435 28 NFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE---PLPGAK-AGALNYALERTAPDAEIIAVIDADYQVEPDWLK 103 (236)
T ss_pred CcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC---CCCCCc-hHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHH
Confidence 4666666655555444333333223333 45443322 222223 2245555332 247999999999999998888
Q ss_pred HHhhc
Q 008190 525 SNLKE 529 (574)
Q Consensus 525 ~~L~~ 529 (574)
+.+..
T Consensus 104 ~l~~~ 108 (236)
T cd06435 104 RLVPI 108 (236)
T ss_pred HHHHH
Confidence 87766
No 27
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.37 E-value=1.4e+02 Score=28.08 Aligned_cols=45 Identities=24% Similarity=0.095 Sum_probs=29.7
Q ss_pred HHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc--CCCCCeEEEEee
Q 008190 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMS 541 (574)
Q Consensus 496 ~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~--~~~~~ly~G~v~ 541 (574)
+++++. ....+|++..|||..+..+.|...+.. .+.-..+.|...
T Consensus 71 ~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 117 (202)
T cd04185 71 GVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL 117 (202)
T ss_pred HHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE
Confidence 455555 457899999999999987766655554 233344445443
No 28
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=46.07 E-value=1.5e+02 Score=27.69 Aligned_cols=102 Identities=11% Similarity=-0.077 Sum_probs=54.2
Q ss_pred HHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcC-CeEEeecccccCchhHHHHHHHHHHhcCCCCcEEE
Q 008190 432 MALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYG-DIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIM 510 (574)
Q Consensus 432 ~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~yg-DIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVm 510 (574)
..|.++..+........+.++++-.-+.+. ....+++-+..|. .+.......+.. . ...+..+......+|++
T Consensus 11 ~~l~~~l~sl~~q~~~~~eiiVvddgS~d~-t~~~~~~~~~~~~~~~~~~~~~~~~G-~----~~~~n~g~~~~~g~~v~ 84 (214)
T cd04196 11 KYLREQLDSILAQTYKNDELIISDDGSTDG-TVEIIKEYIDKDPFIIILIRNGKNLG-V----ARNFESLLQAADGDYVF 84 (214)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCCC-cHHHHHHHHhcCCceEEEEeCCCCcc-H----HHHHHHHHHhCCCCEEE
Confidence 445555543221111256667766555443 3344555555554 333333332221 1 12233344456899999
Q ss_pred EeCCceeecHHHHHHHhhc---CCCCCeEEEE
Q 008190 511 KTDDDAFVRIDEVLSNLKE---KPSNGLLFGL 539 (574)
Q Consensus 511 K~DDDtFVnvd~Ll~~L~~---~~~~~ly~G~ 539 (574)
..|+|.++..+.|...+.. .+...++.|.
T Consensus 85 ~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~ 116 (214)
T cd04196 85 FCDQDDIWLPDKLERLLKAFLKDDKPLLVYSD 116 (214)
T ss_pred EECCCcccChhHHHHHHHHHhcCCCceEEecC
Confidence 9999999987777776664 3333445554
No 29
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=39.23 E-value=2.2e+02 Score=26.85 Aligned_cols=89 Identities=17% Similarity=0.091 Sum_probs=50.3
Q ss_pred CeEEEEEeeccCChhhhHHHHHHHhhcCC--eEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHH
Q 008190 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGD--IQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLS 525 (574)
Q Consensus 448 ~V~v~FvVG~~~n~~~~~~L~eEae~ygD--IL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~ 525 (574)
.+.+++|...+.+.. .+.+++-...|.. +......... -...|.- .+..+......+|++.+|+|+.+..+.|..
T Consensus 30 ~~eiivVdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 106 (196)
T cd02520 30 KYEILFCVQDEDDPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLRR 106 (196)
T ss_pred CeEEEEEeCCCcchH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHHH
Confidence 377777777666543 3445555566653 3222221111 1123432 234444456789999999999998877777
Q ss_pred Hhhc--CCCCCeEEEE
Q 008190 526 NLKE--KPSNGLLFGL 539 (574)
Q Consensus 526 ~L~~--~~~~~ly~G~ 539 (574)
.+.. .+.-....|.
T Consensus 107 l~~~~~~~~~~~v~~~ 122 (196)
T cd02520 107 MVAPLMDPGVGLVTCL 122 (196)
T ss_pred HHHHhhCCCCCeEEee
Confidence 6665 3333444444
No 30
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.23 E-value=2.7e+02 Score=24.48 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=23.8
Q ss_pred HhcCCCCcEEEEeCCceeecHHHHHHHhhc
Q 008190 500 GTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (574)
Q Consensus 500 a~~c~~akfVmK~DDDtFVnvd~Ll~~L~~ 529 (574)
+..+.+.+|++.+|||.++..+.+...+..
T Consensus 69 ~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~ 98 (166)
T cd04186 69 GIREAKGDYVLLLNPDTVVEPGALLELLDA 98 (166)
T ss_pred HHhhCCCCEEEEECCCcEECccHHHHHHHH
Confidence 333448999999999999988888777764
No 31
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=38.78 E-value=2.6e+02 Score=25.43 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc---CCCCCeEEEEee
Q 008190 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMS 541 (574)
Q Consensus 496 ~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~---~~~~~ly~G~v~ 541 (574)
++..+......+|++..|+|.++..+.+...+.. .+...+++|...
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~ 114 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVL 114 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeE
Confidence 3455544557899999999999998888887633 444566777654
No 32
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=33.87 E-value=3.2e+02 Score=27.98 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=58.9
Q ss_pred EEEeCCcCCHH-HHHHHHHHhcCCC-CcCCCCeEEEEEeeccCChhhhHHHHHH----HhhcCCeEEeecccccCchhHH
Q 008190 419 IGVFSTGNNFE-RRMALRRSWMQYP-AVRSGDLAVRFFIGLHKNRQVNFELWKE----AQAYGDIQIMPFVDYYSLISLK 492 (574)
Q Consensus 419 I~V~Sap~nfe-RR~aIReTWg~~~-~v~~~~V~v~FvVG~~~n~~~~~~L~eE----ae~ygDIL~ldF~DsY~NLTlK 492 (574)
|+|.+.-.... -.+.++..+.... .-....+.+ |++-...+++.....+++ .++|..-+.+-+...-.|.-+|
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCcc
Confidence 45555555554 5566766653110 000124566 888666554432211111 1234433333344444455556
Q ss_pred HHHHHHHHhcC-CCCcEEEEeCCceeecHHHHHHHhhc
Q 008190 493 TIAICIFGTKI-LPAKYIMKTDDDAFVRIDEVLSNLKE 529 (574)
Q Consensus 493 Tl~~l~wa~~c-~~akfVmK~DDDtFVnvd~Ll~~L~~ 529 (574)
+-..-.+.... .+.+|++-.|.|+.+..+.|.+.+..
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~ 119 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRR 119 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 65443333222 46799999999999999888887765
No 33
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=33.51 E-value=3.9e+02 Score=24.71 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=47.5
Q ss_pred CeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHHh
Q 008190 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (574)
Q Consensus 448 ~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L 527 (574)
.+.++++-..+.+......+......+.-+.+.... . |... -.++..+......+|++..|+|..+..+.|...+
T Consensus 31 ~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~-~--~~g~--~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 31 NWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFRE-E--NGGI--SAATNSALELATGEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcc-c--CCCH--HHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHH
Confidence 356666655555544433334334444444433221 1 1111 1234455445578999999999999887776666
Q ss_pred hc---CCCCCeEEEE
Q 008190 528 KE---KPSNGLLFGL 539 (574)
Q Consensus 528 ~~---~~~~~ly~G~ 539 (574)
.. .+.-.+++|.
T Consensus 106 ~~~~~~~~~~~v~~~ 120 (202)
T cd04184 106 KALNEHPDADLIYSD 120 (202)
T ss_pred HHHHhCCCCCEEEcc
Confidence 54 3444455553
No 34
>COG4713 Predicted membrane protein [Function unknown]
Probab=33.41 E-value=32 Score=37.90 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.1
Q ss_pred cccccchhHHHHHHHHHHHHH
Q 008190 12 KMRNWSGGLLIMALAIILVMS 32 (574)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (574)
|-||||||.||++|+..+-.|
T Consensus 285 ~~kk~ygg~lii~l~aa~~~~ 305 (489)
T COG4713 285 KDKKWYGGSLIISLLAAVGWY 305 (489)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 568999999999987766554
No 35
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=33.07 E-value=4.7e+02 Score=25.50 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc
Q 008190 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (574)
Q Consensus 496 ~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~ 529 (574)
++..+......+|++.+|+|+.+..+.|.+.+..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~ 108 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAA 108 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHH
Confidence 4455544457799999999999999988887776
No 36
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=32.17 E-value=6.7e+02 Score=26.97 Aligned_cols=81 Identities=20% Similarity=0.084 Sum_probs=46.3
Q ss_pred CeEEEEEeeccCChhhhHHHHHHHhhcC---CeEEeecccccCchhHHHHH---HHHHHh-cCCCCcEEEEeCCceeecH
Q 008190 448 DLAVRFFIGLHKNRQVNFELWKEAQAYG---DIQIMPFVDYYSLISLKTIA---ICIFGT-KILPAKYIMKTDDDAFVRI 520 (574)
Q Consensus 448 ~V~v~FvVG~~~n~~~~~~L~eEae~yg---DIL~ldF~DsY~NLTlKTl~---~l~wa~-~c~~akfVmK~DDDtFVnv 520 (574)
.+.++++-..+.+.+ .+.+++-.+.|. .+......+.-.+-.-|..+ +++.+. .+++.+|++.+|+|+.+..
T Consensus 70 ~~eIIVVDd~StD~T-~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p 148 (384)
T TIGR03469 70 KLHVILVDDHSTDGT-ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGP 148 (384)
T ss_pred ceEEEEEeCCCCCcH-HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCCh
Confidence 467777766666543 222333333443 46555432222222344332 344442 3345899999999999998
Q ss_pred HHHHHHhhc
Q 008190 521 DEVLSNLKE 529 (574)
Q Consensus 521 d~Ll~~L~~ 529 (574)
+.|.+.+..
T Consensus 149 ~~l~~lv~~ 157 (384)
T TIGR03469 149 DNLARLVAR 157 (384)
T ss_pred hHHHHHHHH
Confidence 888777765
No 37
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=31.46 E-value=4.9e+02 Score=25.20 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=59.6
Q ss_pred eeEEEEEeCCcCCHHHHHHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHHH
Q 008190 415 LVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTI 494 (574)
Q Consensus 415 ~~LLI~V~Sap~nfeRR~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl 494 (574)
..+-|+|.+.-....-...|+.-..+.. ....+.++++.-.+.+. ..+.+.+..+. .+......++ .. |.
T Consensus 29 ~~isVvip~~n~~~~l~~~l~si~~q~~--~~~~~eiivvdd~s~d~-t~~~~~~~~~~--~v~~i~~~~~---~g-~~- 98 (251)
T cd06439 29 PTVTIIIPAYNEEAVIEAKLENLLALDY--PRDRLEIIVVSDGSTDG-TAEIAREYADK--GVKLLRFPER---RG-KA- 98 (251)
T ss_pred CEEEEEEecCCcHHHHHHHHHHHHhCcC--CCCcEEEEEEECCCCcc-HHHHHHHHhhC--cEEEEEcCCC---CC-hH-
Confidence 3455555554443344556666555422 11235555555444432 33333332222 3444432222 11 22
Q ss_pred HHHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc--CCCCCeEEEEee
Q 008190 495 AICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMS 541 (574)
Q Consensus 495 ~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~--~~~~~ly~G~v~ 541 (574)
.++..+......+|++.+|+|+++..+.|.+.+.. .+.-.+..|...
T Consensus 99 ~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 99 AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 23344433446799999999999987666666655 333455666554
No 38
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=30.32 E-value=4e+02 Score=25.25 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=52.9
Q ss_pred CeEEEEEeeccCChhhhHHHHHHHhhcCCe-EEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHHH
Q 008190 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDI-QIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (574)
Q Consensus 448 ~V~v~FvVG~~~n~~~~~~L~eEae~ygDI-L~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~ 526 (574)
.+.++.+-+.+.+. ....+++..+.++.. ..+....+ .- +. .++..+......+|++.+|+|..+..+.+.+.
T Consensus 30 ~~eiivvdd~S~D~-t~~~~~~~~~~~~~~i~~i~~~~n---~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDG-TAEVARKLARKNPALIRVLTLPKN---RG-KG-GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCc-hHHHHHHHHHhCCCcEEEEEcccC---CC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 46667666655543 444566666677765 33333222 11 11 23334444446799999999999998888887
Q ss_pred hhc--CCCCCeEEEEee
Q 008190 527 LKE--KPSNGLLFGLMS 541 (574)
Q Consensus 527 L~~--~~~~~ly~G~v~ 541 (574)
+.. .......+|...
T Consensus 104 ~~~~~~~~~~~v~g~r~ 120 (211)
T cd04188 104 EEALKTSGYDIAIGSRA 120 (211)
T ss_pred HHHHhccCCcEEEEEee
Confidence 775 334456777544
No 39
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=28.38 E-value=8.2e+02 Score=26.84 Aligned_cols=105 Identities=11% Similarity=0.080 Sum_probs=60.4
Q ss_pred eeEEEEEeCCcCCHHHHHHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccccCchhHHHH
Q 008190 415 LVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTI 494 (574)
Q Consensus 415 ~~LLI~V~Sap~nfeRR~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~DsY~NLTlKTl 494 (574)
..+-|+|.+.-+...-++.|+.- .+... .++.++++-..+.+ ...+.+++..++|..+....... |.. |.
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sl-l~q~y---p~~eIivVdDgs~D-~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka- 144 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAA-LAQTY---TNIEVIAINDGSSD-DTAQVLDALLAEDPRLRVIHLAH---NQG-KA- 144 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHH-HcCCC---CCeEEEEEECCCCc-cHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-
Confidence 34555555554433334444432 22222 24565555444443 34455666667777776554322 222 32
Q ss_pred HHHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc
Q 008190 495 AICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (574)
Q Consensus 495 ~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~ 529 (574)
.+++.+....+.+|++..|+|+.+..+.|...+..
T Consensus 145 ~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~ 179 (444)
T PRK14583 145 IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAP 179 (444)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHH
Confidence 34566655568999999999999999888777664
No 40
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=28.24 E-value=2.3e+02 Score=26.94 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=24.9
Q ss_pred HHHhcCCCCcEEEEeCCceeecHHHHHHHhhc
Q 008190 498 IFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (574)
Q Consensus 498 ~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~ 529 (574)
..+......+|++.+|+|+++..+.|...+..
T Consensus 77 n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~ 108 (234)
T cd06421 77 NNALAHTTGDFVAILDADHVPTPDFLRRTLGY 108 (234)
T ss_pred HHHHHhCCCCEEEEEccccCcCccHHHHHHHH
Confidence 34433447899999999999998888777765
No 41
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=26.60 E-value=4.6e+02 Score=24.69 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=30.2
Q ss_pred HHHhcCCCCcEEEEeCCceeecHHHHHHHhhc--CCCCCeEEEEee
Q 008190 498 IFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMS 541 (574)
Q Consensus 498 ~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~--~~~~~ly~G~v~ 541 (574)
..+......+|++.+|+|..+..+.|...+.. .+...++.|...
T Consensus 71 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 116 (224)
T cd06442 71 IEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRY 116 (224)
T ss_pred HHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeee
Confidence 33333345699999999999998888777775 344456666543
No 42
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=23.17 E-value=6.7e+02 Score=25.65 Aligned_cols=77 Identities=18% Similarity=0.061 Sum_probs=48.2
Q ss_pred CCeEEEEEeeccCChhhhHHHHHHHhhcCCe-EEe-ecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHH
Q 008190 447 GDLAVRFFIGLHKNRQVNFELWKEAQAYGDI-QIM-PFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVL 524 (574)
Q Consensus 447 ~~V~v~FvVG~~~n~~~~~~L~eEae~ygDI-L~l-dF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll 524 (574)
..+.++++=+.+.. .....|.+-.+.++-+ ++- +....+.+.+ .+...+......+|++.+|.|+++..+.+.
T Consensus 33 ~~~eiIvvd~~s~~-~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~~i~ 107 (281)
T PF10111_consen 33 PDFEIIVVDDGSSD-EFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPDFIE 107 (281)
T ss_pred CCEEEEEEECCCch-hHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHHHHH
Confidence 45666665554443 3446677777777877 322 2222122211 123444444599999999999999999998
Q ss_pred HHhh
Q 008190 525 SNLK 528 (574)
Q Consensus 525 ~~L~ 528 (574)
+.+.
T Consensus 108 ~~~~ 111 (281)
T PF10111_consen 108 KLLN 111 (281)
T ss_pred HHHH
Confidence 8888
No 43
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=22.65 E-value=2.2e+02 Score=26.62 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=31.1
Q ss_pred CCCCCCCCCcEEEEEEEcCCeEEEEeCCeeeEEeeccc
Q 008190 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYRE 364 (574)
Q Consensus 327 ~~fPF~~G~~F~lti~~g~egf~v~VnG~H~tsF~yR~ 364 (574)
....+..|+=..++|.|..+.+.+.|||+.+.++.-..
T Consensus 120 ~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~ 157 (185)
T PF06439_consen 120 VNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPS 157 (185)
T ss_dssp S--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTS
T ss_pred ccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCC
Confidence 45678899999999999999999999999998887664
No 44
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=22.52 E-value=6.2e+02 Score=23.42 Aligned_cols=38 Identities=8% Similarity=0.025 Sum_probs=28.0
Q ss_pred CCCcEEEEeCCceeecHHHHHHHhhc-CCCCCeEEEEee
Q 008190 504 LPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMS 541 (574)
Q Consensus 504 ~~akfVmK~DDDtFVnvd~Ll~~L~~-~~~~~ly~G~v~ 541 (574)
.+.+|++.+|.|+.+..+.|...+.. ......+.|+..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~ 118 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYN 118 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEe
Confidence 46899999999999998877776665 333456666654
No 45
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=22.49 E-value=2.3e+02 Score=30.41 Aligned_cols=98 Identities=11% Similarity=0.014 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHhcCCCCcCCCCeEEEEEeeccCChhhhHHHHHHHhhcCCeEEeecccc--cCchhHHHHHHHHHHhcCC
Q 008190 427 NFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDY--YSLISLKTIAICIFGTKIL 504 (574)
Q Consensus 427 nfeRR~aIReTWg~~~~v~~~~V~v~FvVG~~~n~~~~~~L~eEae~ygDIL~ldF~Ds--Y~NLTlKTl~~l~wa~~c~ 504 (574)
..+.|..-|-.-...- .....+.++|+=|-. ....+|..-.....-.+.+++.+. +..-+.-..++..|+.+-+
T Consensus 18 ~~~~R~f~~~~~~k~f-ts~~~~~vi~~~~~~---~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~ 93 (346)
T COG4092 18 LTDSRQFSRTSAVKVF-TSSDITMVICLRAHE---VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKC 93 (346)
T ss_pred hhHHHHHhhHhhhhhc-cccccEEEEEEecch---hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccc
Confidence 3456666665433321 112344555554432 334556666666666777777543 3333344445667777777
Q ss_pred CCcEEEEeCCceeecHHHHHHHhh
Q 008190 505 PAKYIMKTDDDAFVRIDEVLSNLK 528 (574)
Q Consensus 505 ~akfVmK~DDDtFVnvd~Ll~~L~ 528 (574)
+..+++.+|-|+|.-.++..+.|+
T Consensus 94 ~Sn~vlFlDvDc~~S~dnF~k~l~ 117 (346)
T COG4092 94 ESNLVLFLDVDCFGSSDNFAKMLS 117 (346)
T ss_pred cccEEEEEeccccccHHHHHHHHH
Confidence 999999999999999999888773
No 46
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=22.35 E-value=2.2e+02 Score=27.33 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCCcEEEEeCCceeecHHHHHHHhhc--CCCCCeEEE
Q 008190 504 LPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFG 538 (574)
Q Consensus 504 ~~akfVmK~DDDtFVnvd~Ll~~L~~--~~~~~ly~G 538 (574)
.+.++++-+|+|+.|+.+-|...+.. .+.-.+..|
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~ 66 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTG 66 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEe
Confidence 68999999999999999988887776 344444444
No 47
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=21.96 E-value=7.6e+02 Score=24.19 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=50.5
Q ss_pred CeEEEEEeeccCChhhhHHHHHHHhhcCC--eEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHHHHH
Q 008190 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGD--IQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLS 525 (574)
Q Consensus 448 ~V~v~FvVG~~~n~~~~~~L~eEae~ygD--IL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~ 525 (574)
.+.++++-..+.+. ..+.+++-.++|++ +....-.. |... -.++..+......+|++.+|+|..++++.|.+
T Consensus 40 ~~eiivvDdgS~D~-t~~i~~~~~~~~~~~~v~~~~~~~---n~G~--~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~ 113 (243)
T PLN02726 40 DFEIIVVDDGSPDG-TQDVVKQLQKVYGEDRILLRPRPG---KLGL--GTAYIHGLKHASGDFVVIMDADLSHHPKYLPS 113 (243)
T ss_pred CeEEEEEeCCCCCC-HHHHHHHHHHhcCCCcEEEEecCC---CCCH--HHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHH
Confidence 56777776655553 33334444555653 33322221 2211 12344443345789999999999999888877
Q ss_pred Hhhc--CCCCCeEEEEe
Q 008190 526 NLKE--KPSNGLLFGLM 540 (574)
Q Consensus 526 ~L~~--~~~~~ly~G~v 540 (574)
.+.. .....+.+|..
T Consensus 114 l~~~~~~~~~~~v~g~r 130 (243)
T PLN02726 114 FIKKQRETGADIVTGTR 130 (243)
T ss_pred HHHHHHhcCCcEEEEcc
Confidence 7765 33445677754
No 48
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=20.88 E-value=5e+02 Score=21.69 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=30.6
Q ss_pred cCCeEEeecccccCchhHHHHHHHHHHhcCCCCcEEEEeCCceeecHHH
Q 008190 474 YGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDE 522 (574)
Q Consensus 474 ygDIL~ldF~DsY~NLTlKTl~~l~wa~~c~~akfVmK~DDDtFVnvd~ 522 (574)
+.++-+....+.|..-.......-.+......++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4667666676777543333222112233345899999999999986654
No 49
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=20.48 E-value=3.7e+02 Score=25.63 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=24.3
Q ss_pred HHHhcCCCCcEEEEeCCceeecHHHHHHHhhc
Q 008190 498 IFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (574)
Q Consensus 498 ~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~ 529 (574)
..+......+|++..|+|.++..+.|...+..
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~ 108 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEA 108 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHH
Confidence 44444557899999999999988877665554
No 50
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=20.19 E-value=4.5e+02 Score=26.39 Aligned_cols=55 Identities=9% Similarity=-0.106 Sum_probs=33.7
Q ss_pred hhcCCeEEeecccccCchhHHHH-HHHHHHhcCCCCcEEEEeCCceeecHHHHHHHhhc
Q 008190 472 QAYGDIQIMPFVDYYSLISLKTI-AICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE 529 (574)
Q Consensus 472 e~ygDIL~ldF~DsY~NLTlKTl-~~l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~ 529 (574)
+.+.+|..+...++.- -.+.+ .++++|.. ..++|++..|||+.+..+.|...+..
T Consensus 42 ~~~~~i~~i~~~~N~G--~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~ 97 (281)
T TIGR01556 42 LRGQKIALIHLGDNQG--IAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKL 97 (281)
T ss_pred ccCCCeEEEECCCCcc--hHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 3456666555433321 12233 24566643 37899999999999987776666554
No 51
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=20.16 E-value=6.5e+02 Score=22.75 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=25.8
Q ss_pred HHHHhcCCCCcEEEEeCCceeecHHHHHHHhhcC
Q 008190 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKEK 530 (574)
Q Consensus 497 l~wa~~c~~akfVmK~DDDtFVnvd~Ll~~L~~~ 530 (574)
+..+......+|++..|+|..+..+.|...++..
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 3455555678999999999999887777666653
Done!