BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008191
(574 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 218/485 (44%), Positives = 292/485 (60%), Gaps = 28/485 (5%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L ++NT++R++E KP G+VGMYVCG+T YDL HIGH R +V FDV+ RYLR LGY++
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKII RANE GE +++ R E H+D L+ L P +EPR + H+ I
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I++ Q++ G AY D GDV F V P YG LS + L+ +AG RV V K+NP DF
Sbjct: 122 IELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +KEGEP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S A + +++YW+H+G V +D EKMSKSLGNFFT+R V++ Y +R FL+ HYRS
Sbjct: 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQ 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEXXXXXXXXXXXXXXIPPDTVTSINKFHNDFLASM 434
+NYS L+ A + +Y L + + P F F+ +M
Sbjct: 302 LNYSEENLKQARAALERLYTALRGTD------------KTVAP---AGGEAFEARFIEAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D + +N L +A + + A+ +R + VLGL+
Sbjct: 347 DDDFNTPEAYSVLFDMAREVNRL--------KAEDMAAANAMASHLRKLSAVLGLLEQ-E 397
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
E LQ +A +++ E + L I+ R ARK K++ +DA R L +GI L D P
Sbjct: 398 PEAFLQSGAQA-DDSEVAEIEAL--IQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQ 454
Query: 555 GTTWR 559
GTTWR
Sbjct: 455 GTTWR 459
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/483 (40%), Positives = 283/483 (58%), Gaps = 30/483 (6%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
++N++++++E+ KP GKV +YVCG T YD HIGH R ++ FD + RYLR GYEV +
Sbjct: 7 IFNSLTKQKEIFKPIESGKVKLYVCGXTVYDYXHIGHGRSWIIFDXVVRYLRXRGYEVTF 66
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
VRN TD+DDKII RA E E P +L+ R+ + H+D L L P EPR + ++P II
Sbjct: 67 VRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIK 126
Query: 198 MITQILDNGFAYR-VDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFAL 256
+I ++LDN +AY +GDV+F V +F +YG+LS R L++ +AG RV V K++P DF L
Sbjct: 127 LIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVL 186
Query: 257 WKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316
WK AK GEP W+SPWG GRPGWHIECSA S++ LG FDIHGGG+DL FPHHENEIAQS
Sbjct: 187 WKKAKPGEPKWDSPWGEGRPGWHIECSAXSSSILGQPFDIHGGGLDLKFPHHENEIAQSE 246
Query: 317 AACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPIN 376
A + W H G + I+ EK SKSLGN +IR+ ++ LR FL+ HYR+P++
Sbjct: 247 AGEEKPFVKLWXHAGLLEINKEKXSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLS 306
Query: 377 YSVVQLESASERIFYIYQTLHDCEXXXXXXXXXXXXXXIPPDTVTSINKFHNDFLASMSD 436
YS LE+ + Y L +P + + + F + D
Sbjct: 307 YSKENLENGRLALERFYLALR----------------GLPVVNHEKTSSYTDRFYEAXDD 350
Query: 437 DLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSE 496
D +T + A L + ++ IN + ++E A L ++ + + GL+ +
Sbjct: 351 DFNTPIAFALLFEXVREINRF-------RDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQ 403
Query: 497 VLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGT 556
L + A K AD+ E + L I+ R AR K+++ +D IR L +G+A+ DS GT
Sbjct: 404 FL----QGAKKEADVQEIKKL--IDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDGT 457
Query: 557 TWR 559
+WR
Sbjct: 458 SWR 460
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 151/508 (29%), Positives = 247/508 (48%), Gaps = 54/508 (10%)
Query: 72 ASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHL 131
S L LYNT R ++ + V +Y CG T Y+ +HIG+ R Y+ D+L + LR L
Sbjct: 20 GSMILKLYNT--RTKDFSELTNFENVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL 77
Query: 132 GYEVCYVRNFTDV----------DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181
GY+V Y N TD+ +DK+ A E G +S + E F D L+ +
Sbjct: 78 GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVY 137
Query: 182 PSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLED-NRAGE 240
P S H+P +I+++ + + Y +G+VYF F YG+++G L D +
Sbjct: 138 PDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLP 197
Query: 241 RVAVDSRKKNPADFALW---KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIH 297
RV VD K+N DF LW K+ E W+SPWG G P WH+EC+AM+ Y + DIH
Sbjct: 198 RVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIH 257
Query: 298 GGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL- 356
GG+D + HH NEIA + N ++H F+ +D KMSKS GNF T++ + +
Sbjct: 258 LGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQN 317
Query: 357 YHPLALRLFLIGTHYRSPINYSVVQLESAS-------ERIFYIYQTLHDCEXXXXXXXXX 409
+ PL R + +HYR+ + +S+ L+++ ++ Y Y++L +
Sbjct: 318 FSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLK 377
Query: 410 XXXXXIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMR 469
+ + +++ F+ +S DL+ LA L + +K+
Sbjct: 378 NFGFSVEKE-------YYDSFVEKISFDLNVAQGLALLWEIIKS---------------- 414
Query: 470 LESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQR-IEDRTVARK 528
++L+ + K +R +MS E +L K L+ D+ D+ ++ IE+R +A+
Sbjct: 415 -DNLSFVSK-LRLAFIFDEIMSLNLREEIL----KNLQNHDVVIDENMKALIEERRIAKC 468
Query: 529 NKEYEKSDAIRKDLAAVGIALMDSPVGT 556
K ++++D IR A G L+D+ GT
Sbjct: 469 EKNFKRADEIRDFFAKKGFVLVDTKEGT 496
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 179/325 (55%), Gaps = 14/325 (4%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVG-MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYE 134
L L+++ R+ V+P G MYVCG+TPYD +H+GHA Y+TFD+++R G+
Sbjct: 21 LRLFDSADRQ---VRPVTPGPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHT 77
Query: 135 VCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPH 194
V YV+N TDVDD + RA G D +L R + F +DM L LPP +D +
Sbjct: 78 VQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAE 137
Query: 195 IIDMITQILDNGFAYRVDG----DVYFSVDKFPEYGQLSG--RKLEDNRAGERVAVDSR- 247
+++M+ ++L +G AY V+ DVYF D ++G SG R ER R
Sbjct: 138 VVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRP 197
Query: 248 -KKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 306
K + D LW++ + GEP W SP+G GRPGWH+ECSA++ +G DI GGG DL+FP
Sbjct: 198 GKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFP 257
Query: 307 HHENEIAQSCAACNNSHIS-YWIHNGFVTIDSEKMSKSLGNFFTIRQV-MELYHPLALRL 364
HHE A + + + +++H G + D KMSKS GN + Q+ + P A+RL
Sbjct: 258 HHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRL 317
Query: 365 FLIGTHYRSPINYSVVQLESASERI 389
L HYR +S L+ A+ R+
Sbjct: 318 GLFSGHYREDRFWSNEVLDEANARL 342
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 108 DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYC 167
D+ H+GHA + D + RY R Y+V ++ + KI +A ELG P L R
Sbjct: 18 DVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNA 77
Query: 168 EEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFS 218
E F + + + + + R +D P+ + + ++ + + GD+Y
Sbjct: 78 ERF-KKLWEFLKIEYTKFIRTTD--PYHVKFVQKVFEECYK---RGDIYLG 122
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+G+ T++ +KMSK+LGN +V++ Y +R FL+
Sbjct: 286 HGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLL 323
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 28/166 (16%)
Query: 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPIS 161
V P H+GHAR + DV+ R LR LGYEV V+N+ D +LG I
Sbjct: 126 TSVNPTKPLHMGHARNAILGDVMARILRFLGYEVE-VQNYID----------DLG---IQ 171
Query: 162 LSRRYC------EEFHQDMVDLHCLPPSVEPRVSDHMPHI--IDMITQILDNGFAYRVDG 213
++ Y EEF + M +L P DH + +++ ++ DN ++
Sbjct: 172 FAQVYWGYLRLKEEFERIMNELRERGLKDNP--IDHALGLLYVEVNRRLEDNP---ELEN 226
Query: 214 DVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKS 259
++ + K E G+L GRKL + ++ + D +W+S
Sbjct: 227 EIRDIMKKL-ESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWES 271
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 106 PYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDV-DDKIIARANELGEDPISLSR 164
P + HIGHA Y+ D + R+ R GY+V Y+ TDV K+ A + G L+R
Sbjct: 23 PNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTG-TDVHGQKMAETAAKEGIPAAELAR 81
Query: 165 RYCEEFHQ 172
R + F +
Sbjct: 82 RNSDVFQR 89
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPISLSRRY 166
H+GH ++ DV RY R G+EV NF DD I+ +A +LG P +
Sbjct: 34 HLGHMLEHIQADVWVRYQRMRGHEV----NFICADDAHGTPIMLKAQQLGITPEQMIGEM 89
Query: 167 CEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI-TQILDNGF 207
+E D + + S+ + ++I +++ +NGF
Sbjct: 90 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGF 131
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPISLSRRY 166
H+GH ++ DV RY R G+EV NF DD I+ +A +LG P +
Sbjct: 21 HLGHMLEHIQADVWVRYQRMRGHEV----NFICADDAHGTPIMLKAQQLGITPEQMIGEM 76
Query: 167 CEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI-TQILDNGF 207
+E D + + S+ + ++I +++ +NGF
Sbjct: 77 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGF 118
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPISLSRRY 166
H+GH ++ DV RY R G+EV NF DD I+ +A +LG P +
Sbjct: 21 HLGHMLEHIQADVWVRYQRMRGHEV----NFICADDAHGTPIMLKAQQLGITPEQMIGEM 76
Query: 167 CEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI-TQILDNGF 207
+E D + + S+ + ++I +++ +NGF
Sbjct: 77 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGF 118
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPISLSRRY 166
H+GH ++ DV RY R G+EV NF DD I+ +A +LG P +
Sbjct: 22 HLGHMLEHIQADVWVRYQRMRGHEV----NFICADDAHGTPIMLKAQQLGITPEQMIGEM 77
Query: 167 CEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI-TQILDNGF 207
+E D + + S+ + ++I +++ +NGF
Sbjct: 78 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGF 119
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPISLSRRY 166
H+GH ++ DV RY R G+EV NF DD I+ +A +LG P +
Sbjct: 21 HLGHMLEHIQADVWVRYQRMRGHEV----NFICADDAHGTPIMLKAQQLGITPEQMIGEM 76
Query: 167 CEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI-TQILDNGF 207
+E D + + S+ + ++I +++ +NGF
Sbjct: 77 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGF 118
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 99 MYVCGVTPYDLS---HIGHARVYVTFDVLYRYLRHLGYEVCY 137
Y+ PY LS H+GHAR Y DV+ R+ R GY V +
Sbjct: 36 FYITVAFPY-LSGHLHVGHARTYTIPDVIARFKRMQGYNVLF 76
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIH-NGFVTIDSEKMSKSLGNFFTI 350
+ D G DL+ H I A H I NGF T++ +KMSKS GN
Sbjct: 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNF 661
Query: 351 RQVMELYHPLALRLFLI 367
+E +RL+++
Sbjct: 662 IDAIEENGADVVRLYIM 678
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 99 MYVCGVTPYDLS---HIGHARVYVTFDVLYRYLRHLGYEVCY 137
Y+ PY LS H+GHAR Y DV+ R+ R GY V +
Sbjct: 36 FYITVAFPY-LSGHLHVGHARTYTIPDVIARFKRMQGYNVLF 76
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIH-NGFVTIDSEKMSKSLGNFFTI 350
+ D G DL+ H I A H I NGF T++ +KMSKS GN
Sbjct: 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNF 661
Query: 351 RQVMELYHPLALRLFLI 367
+E +RL+++
Sbjct: 662 IDAIEENGADVVRLYIM 678
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
HIGH + DVL RY R G EV + + K+ A + G P+ + EF
Sbjct: 42 HIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEF 101
Query: 171 HQ 172
Q
Sbjct: 102 KQ 103
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 95 GKVGMYVCGVTPY---DLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
G+ YV + PY DL H+GH + Y DVL R+ R GYEV +
Sbjct: 31 GRGKQYVLVMFPYPSGDL-HMGHLKNYTMGDVLARFRRMQGYEVLH 75
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 95 GKVGMYVCGVTPY---DLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
G+ YV + PY DL H+GH + Y DVL R+ R GYEV +
Sbjct: 31 GRGKQYVLVMFPYPSGDL-HMGHLKNYTMGDVLARFRRMQGYEVLH 75
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 295 DIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSE--KMSKSLGNFFTIRQ 352
D++ G D + I S A S + + +GFV +D E KMSKSLGN Q
Sbjct: 550 DMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFV-MDGEGKKMSKSLGNVIVPDQ 608
Query: 353 VMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTL 396
V++ RL++ T Y + + S L+ S+ I TL
Sbjct: 609 VVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTL 652
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYE 134
HIGHAR V D L R RHLGY+
Sbjct: 46 HIGHARGAVFGDTLTRLARHLGYK 69
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 85 KRELVKPKVEGKVGMYVCGVTPYDLS--HIGHARVYVTFDVLYRYLRHLGYEV 135
KR + E K Y + PY H+GH R Y DV+ RY R LG V
Sbjct: 41 KRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNV 93
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+GHA V D L R+ R GY ++ + + + A GEDP + R F
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRF 78
Query: 171 HQ 172
+
Sbjct: 79 KR 80
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+GHA V D L R+ R GY ++ + + + A GEDP + R F
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRF 78
Query: 171 HQ 172
+
Sbjct: 79 KR 80
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+GHA V D L R+ R GY ++ + + + A GEDP + R F
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRF 78
Query: 171 HQ 172
+
Sbjct: 79 KR 80
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 12/138 (8%)
Query: 231 RKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYL 290
R LED + E K++ F W S+ + W GW E + A Y
Sbjct: 430 RYLEDPTSCEACGSPRLKRDEDVFDTWFSS--------ALWPLSTLGWPEETEDLKAFYP 481
Query: 291 GHSFDIHGGGMDLVFPH-HENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFT 349
G D+ G D++F E++ + +H + +KMSKS GN
Sbjct: 482 G---DVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVID 538
Query: 350 IRQVMELYHPLALRLFLI 367
+++E Y ALR LI
Sbjct: 539 PLEMVERYGADALRFALI 556
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD 145
G+TP H+G+ R T ++ LR GYEV ++ + D D
Sbjct: 26 SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYD 69
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment
Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS
EQUISIMILIS.
pdb|1VJ7|B Chain B, Crystal Structure Of The Bifunctional Catalytic Fragment
Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS
EQUISIMILIS
Length = 393
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 427 HNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESL 473
H L +MS D+ V+L L+D L + L H RK K++ + E++
Sbjct: 124 HRKMLMAMSKDIR--VILVKLADRLHNMRTLKHLRKDKQERISRETM 168
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+ +G+ T D +K+SKSLGN F + E + AL+ FL+
Sbjct: 312 VAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+GF+ EKMSKS+GN +++E Y LR FL+
Sbjct: 312 HGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLM 349
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 106 PYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRR 165
P HIGHA + D + R+ R G +V ++ + K++ A + G P L+ R
Sbjct: 36 PNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADR 95
Query: 166 YCEEFHQ 172
F +
Sbjct: 96 NTSAFRR 102
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+ +G+ T D +K+SKSLGN F + E + AL+ FL+
Sbjct: 312 VAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+ +G+ T D +K+SKSLGN F + E + AL+ FL+
Sbjct: 312 VAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|1EM2|A Chain A, Star-Related Lipid Transport Domain Of Mln64
Length = 229
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 494 YSEVLLQLREKALKRADLTEDQVLQRIEDRTV 525
Y EV+LQ L +T Q+LQR+ED T+
Sbjct: 82 YQEVILQPERXVLWNKTVTACQILQRVEDNTL 113
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 79 YNTMSRKRELVKPKVEGKVGMYVCGVTPYDLS---HIGHARVYVTFDVLYRYLRHLGYEV 135
+ T K + K + K Y + PY H+GH Y D++ RY R G++V
Sbjct: 18 WQTRWEKTKAFKTTNKSKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRLKGFDV 77
Query: 136 CY 137
+
Sbjct: 78 LH 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,884,348
Number of Sequences: 62578
Number of extensions: 708992
Number of successful extensions: 1519
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 60
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)