BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008191
(574 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 /
DSM 17278 / SZ) GN=cysS PE=3 SV=1
Length = 487
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/484 (49%), Positives = 317/484 (65%), Gaps = 1/484 (0%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNT+S ++E P+V GKVGMYVCGVT YD HIGHAR + FD++YRYLR GY+V
Sbjct: 3 LRLYNTLSGEKEPFVPRVAGKVGMYVCGVTVYDFCHIGHARAGIVFDMIYRYLRFSGYDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
Y+RN+TD+DDKII RAN+ G D +++ RY F +DM L L P++EP+ +DH+ I
Sbjct: 63 TYIRNYTDIDDKIINRANQEGTDYRTIADRYIATFDEDMDRLGMLRPTIEPKATDHIEDI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I +I +++DNG AY VDGDVYF+V+ FP Y +LSGR L+D AG RV VD RK+NP DFA
Sbjct: 123 ISIIQRLIDNGHAYAVDGDVYFAVETFPAYLKLSGRNLDDMLAGARVDVDERKRNPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEP+WESPWG GRPGWHIECSAMS +LG SFDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPSFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
A + YW+HNGFV I+SEKMSKSLGNFFTIR+V+EL+ P LR F++ HYRSP+
Sbjct: 243 EGANGCQFVKYWLHNGFVNINSEKMSKSLGNFFTIREVLELFDPETLRFFILQAHYRSPL 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMS 435
+YS L A + IY+ L ++AL A + + + F +M
Sbjct: 303 DYSDQNLREAQAGLSRIYEALAALDQALEKPATAIHLPASAAEFAEKVAGLLPRFREAMD 362
Query: 436 DDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYS 495
DD +T L L D ++T+N LL G A R + L L + + VLGL S
Sbjct: 363 DDFNTAQALGTLFDSIRTLNRLLAEGGGSSSASRAD-LEQLRAAVTEIGAVLGLFRIKPS 421
Query: 496 EVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVG 555
+ L + + +++ +++ I +R ARKNK++++SD IR L + I L+D+P G
Sbjct: 422 DWLAAREAEKARHLEISPEEIEGLIVERAAARKNKDFKRSDEIRDYLLSRDIQLVDTPQG 481
Query: 556 TTWR 559
T W+
Sbjct: 482 TAWK 485
>sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
GN=cysS PE=3 SV=1
Length = 493
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/489 (48%), Positives = 305/489 (62%), Gaps = 7/489 (1%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT++ +++ P GK GMYVCGVT YD HIGHAR V FDV+YRYL + GY V
Sbjct: 3 LRIYNTLTGEKDTFVPLHPGKAGMYVCGVTVYDYCHIGHARANVVFDVIYRYLGYSGYAV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRNFTD+DDKII RAN+ G D ++S RY E F+QDM L P+VEP+ +DHM I
Sbjct: 63 TYVRNFTDIDDKIINRANQEGVDYTTISERYIEAFNQDMARLGLAKPTVEPKATDHMGGI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I +I ++ G AY DGDVY++V+ FP Y +LSGR LED AG RV VD RK+NP DFA
Sbjct: 123 ISVIETLIAKGHAYESDGDVYYAVESFPSYLRLSGRNLEDMLAGARVEVDDRKRNPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEP W+SPWG GRPGWHIECSAMS YLG +FDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKGSKPGEPSWDSPWGAGRPGWHIECSAMSMEYLGKTFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA + YW+HNGFV I+SEKMSKSLGNFFTIR+V+E Y P LR F++ HYRSPI
Sbjct: 243 EAANGCQFVRYWMHNGFVNINSEKMSKSLGNFFTIREVLEQYDPETLRFFILSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSLLDA---AALKDSIPPDTVTSINKFH---ND 429
++S L A + IY L + A+ D +PP K +
Sbjct: 303 DFSDQNLNDAQAGLERIYSCLAAVDGAMEGQDVPNQPVEGAPLPPAGAELHEKLQSLISR 362
Query: 430 FLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGL 489
F +M DD +T L L + ++ N + G + L L + + VLGL
Sbjct: 363 FREAMDDDFNTAQALGVLFEAVRATNRFM-AESGDQTPATLALLGQVRRLFAETGDVLGL 421
Query: 490 MSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIAL 549
++ + L +++ + +++ ++ Q I +R AR N+++++ D IR L GI L
Sbjct: 422 FTSQPAAWLESIKQAKSDQMEISPQEIEQLIAERAAARTNRDFKRGDEIRDLLLQKGIQL 481
Query: 550 MDSPVGTTW 558
+DSP GTTW
Sbjct: 482 LDSPQGTTW 490
>sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 /
ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1
Length = 485
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/484 (48%), Positives = 312/484 (64%), Gaps = 3/484 (0%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+S +E P V G+V MYVCGVT YD HIGHAR V FD++YRYLRH GY+V
Sbjct: 3 LRVYNTLSGTKEEFTPLVPGRVSMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGYDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TDVDDKII RAN+ G ++S R+ EF +DM L P+ +P+ ++H+ +
Sbjct: 63 TYVRNYTDVDDKIINRANQEGVPYNAISERFIAEFDRDMAALGLDLPTHQPKATEHIAEM 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
ID+I+++++ GFAY DGDVYF V+KF Y +LS R L++ +AG R+ V +K++P DFA
Sbjct: 123 IDVISRLIEKGFAYAADGDVYFCVEKFDPYLKLSKRNLDEMQAGARIEVGEKKRHPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEPFWESPWG GRPGWHIECSAMS YLG +FDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKGSKPGEPFWESPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA YWIHNGFV I+SEKMSKSLGNFFTI++V+E Y LR FL+ HYRSPI
Sbjct: 243 EAANGKPFAHYWIHNGFVNINSEKMSKSLGNFFTIKEVLEKYDAEVLRFFLLSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMS 435
++S L A + IY TL ++ L+ A + + F F +M
Sbjct: 303 DFSDQNLREAEAGLERIYGTLAGIDENLT-KGAEGTAEETDRELAEKAVTFPERFREAMD 361
Query: 436 DDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYS 495
DD +T L + D +++ N +L KG L LA IR V VLG+ ++
Sbjct: 362 DDFNTAQALGFVFDLVRSANRVLGEGKGGGSNRAL--LAEARDRIRKVGAVLGIFTSEPR 419
Query: 496 EVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVG 555
+L+ + +T +++ + I +R AR N++++++D IR LAA GI L+DSP G
Sbjct: 420 AFAERLKNRKAAELPITAEEIERLIAERIAARANRDFKRADEIRDSLAAKGIMLLDSPQG 479
Query: 556 TTWR 559
TTW+
Sbjct: 480 TTWK 483
>sp|Q3A8C9|SYC_PELCD Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 /
Gra Bd 1) GN=cysS PE=3 SV=1
Length = 481
Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/486 (47%), Positives = 312/486 (64%), Gaps = 11/486 (2%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNTM+ ++E +P GKVGMYVCGVT YD HIGHAR V FD++YRYL+ +G++V
Sbjct: 3 LRVYNTMTGRKEEFEPLQPGKVGMYVCGVTVYDYCHIGHARANVVFDIIYRYLQFIGFDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TDVDDKII RANE G +L+ + + F +DM L P+++P+ + H+ HI
Sbjct: 63 TYVRNYTDVDDKIIKRANERGISSDTLAGEFIQAFDEDMNRLGLAEPTIQPKATCHIDHI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
++++ +++D G AY GDVYFSV+ FP Y +LS R +++ R+G R+ +K+NP DFA
Sbjct: 123 VNLVQRLIDRGIAYESQGDVYFSVEDFPSYLKLSKRNMDEMRSGARITPGEQKRNPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK+AK GEP WESPWGPGRPGWHIECSAMS YLG SFDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKAAKPGEPSWESPWGPGRPGWHIECSAMSMEYLGESFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
A + YW+HNGFV ++ EKMSKSLGNFFTIR +++ Y P LR F++ HYRSPI
Sbjct: 243 EGATGKPFVKYWLHNGFVNVNQEKMSKSLGNFFTIRDILQTYDPEVLRFFILTAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSI--NKFHNDFLAS 433
++S L+ A + Y+ LH + L+ + PP VTS N F +
Sbjct: 303 DFSDQNLQDARLGLSRFYEGLHAASEVLA---------ACPPGDVTSEAGATLENVFREA 353
Query: 434 MSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTG 493
M DD +T + L D ++TIN L+ + +K ++ + AL + + VLGL +
Sbjct: 354 MDDDFNTAAAIGHLFDAVRTINRLITEKGFRKNREKVAQVRALYDALLKLGGVLGLFVSD 413
Query: 494 YSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSP 553
+ L Q+ L TE + I R ARKNK++ ++D IR +LAA GI L+D P
Sbjct: 414 PAAWLKQMNLAMLATTGYTESDIEDFIRQRQEARKNKDFARADEIRDELAAKGIQLLDGP 473
Query: 554 VGTTWR 559
GT W+
Sbjct: 474 QGTAWK 479
>sp|Q6AJ23|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=cysS PE=3 SV=1
Length = 489
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/481 (46%), Positives = 312/481 (64%), Gaps = 2/481 (0%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
+YNT+S K+E ++P V +YVCG+T YD HIGHAR + FD++ RYLR+L Y+V +
Sbjct: 5 VYNTLSGKKEPLQPIEPNHVKLYVCGITSYDYCHIGHARSALAFDMIVRYLRYLDYKVTF 64
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
VRNFTD+DDKIIARANE G +L+ R+ +EFH DM +L L P +EP+ ++H+ +ID
Sbjct: 65 VRNFTDIDDKIIARANETGVTAQALAERFIDEFHTDMDNLGTLRPDIEPKATEHIQEMID 124
Query: 198 MITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALW 257
+I +++D AY GDVY+ V+ FPEYG+LSGR +ED +AG R++++ +K+NP DFALW
Sbjct: 125 IIQELVDKDMAYPSAGDVYYVVNSFPEYGKLSGRNIEDMQAGARISINEQKRNPMDFALW 184
Query: 258 KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCA 317
K++K GEP WESPWGPGRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEIAQS
Sbjct: 185 KASKPGEPSWESPWGPGRPGWHIECSAMSRKYLGENFDIHGGGKDLIFPHHENEIAQSEG 244
Query: 318 ACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINY 377
A + WIH+GFVTI EKMSKSLGNF TI+ +++ YHP LR F+ T YR+P+++
Sbjct: 245 ANGKPFANTWIHHGFVTIKDEKMSKSLGNFLTIKDILDHYHPEILRAFIFSTQYRNPLDF 304
Query: 378 SVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDD 437
S + ++ A + +Y+ LHD ++ L+ D L I +N F +M++D
Sbjct: 305 SEIAMQDAETALVRLYECLHDIQQ-LAKGD-PTLPALISAKDAAKLNSIETRFQEAMNND 362
Query: 438 LHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEV 497
+T + L L D +K IN A+ ++ L I+ + ++GL+ +
Sbjct: 363 FNTALALGVLYDAIKIINRAQRALTDTPSALDVKMLKGSMTLIQKLAGIVGLLQEDANLF 422
Query: 498 LLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTT 557
L Q +EK L D+TE ++ I+ R AR NK++ +SD IR L GI L D GT
Sbjct: 423 LQQRKEKMLSGIDITEAEIESYIQQRLDARANKDWARSDEIRDILLEKGITLKDGADGTG 482
Query: 558 W 558
W
Sbjct: 483 W 483
>sp|B9LZV4|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3
SV=1
Length = 494
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/494 (48%), Positives = 318/494 (64%), Gaps = 16/494 (3%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+S +E P GKV MYVCGVT YD HIGHAR V FDV+YRY HLG +V
Sbjct: 3 LRVYNTLSGNKEEFVPVEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYFCHLGLDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TD+DDKII RAN G +S R+ +EF +DM L P+ +P+ ++H+ I
Sbjct: 63 TYVRNYTDIDDKIINRANREGVTYDLISERFIKEFDRDMERLGLKLPTCQPKATEHIDEI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I ++ ++D FAY+ GDV F V+KF Y +LSGR LED +AG R+ VD RK++P DFA
Sbjct: 123 ISLVQTLIDKDFAYQAGGDVNFCVEKFDSYLKLSGRTLEDMQAGARIEVDERKRHPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK AK GEPFWESPWG GRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEIAQS
Sbjct: 183 LWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGTTFDIHGGGKDLIFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA ++YW+HNGFV I+SEKMSKSLGNFFTI++V++ Y LR FL+ HYRSPI
Sbjct: 243 EAATGKPFVNYWLHNGFVNINSEKMSKSLGNFFTIKEVLDRYDNEVLRFFLLSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSL--------LDAAALKDSIPP--DTVTSINK 425
++S L A + IY+ L E+ L+ +DA++L ++ D TSI+
Sbjct: 303 DFSDQNLTEAEAGLERIYKALAAVEETLAAGNGCTGAPVDASSLNEAEGELFDKTTSISA 362
Query: 426 FHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKT-IRNVL 484
F +M DD +T + +A + D ++ +N +L G + SL L K + +
Sbjct: 363 ---RFGEAMDDDFNTALAMAHVFDLVRCVNRVLSETAGASD--NICSLCTLIKAEVAKIA 417
Query: 485 TVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAA 544
VLG+ S+ + L +L+ + D+ D++ + I +RT ARK K++++SD IR LAA
Sbjct: 418 GVLGIFSSKPASFLERLKSRKAGNLDIAVDEIERLIAERTAARKAKDFKRSDEIRDQLAA 477
Query: 545 VGIALMDSPVGTTW 558
I L+DS GTTW
Sbjct: 478 KNIVLLDSQQGTTW 491
>sp|A0LIR9|SYC_SYNFM Cysteine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=cysS PE=3 SV=1
Length = 493
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/489 (47%), Positives = 316/489 (64%), Gaps = 5/489 (1%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+++ +E P GKV YVCGVT YDLSHIGHAR + FDV+YRYLR LG+EV
Sbjct: 3 LHVYNTLTKSKEEFIPLEPGKVKFYVCGVTVYDLSHIGHARSAIVFDVIYRYLRFLGFEV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRNFTDVDDKII RAN+ G D S+++RY F++DM L L P +EP ++++P +
Sbjct: 63 TYVRNFTDVDDKIIRRANDAGTDCRSIAQRYIAAFYEDMDALGVLRPDLEPLATENVPGM 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I++I ++D G AY+ DV+F ++KFP YG+LSGR++ED AG RV VD+RK+NP DF
Sbjct: 123 IEIIRVLMDKGIAYQAGADVFFEIEKFPGYGKLSGRQIEDMLAGARVEVDARKRNPLDFV 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEP W+SPWGPGRPGWHIECSAM + +LG +FDIHGGG DL+FPHHENEIAQS
Sbjct: 183 LWKGSKPGEPSWDSPWGPGRPGWHIECSAMGSRFLGKTFDIHGGGKDLIFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA + YW+HNGFV I++EKMSKSLGNF TIR V++ HP +R F++ HYRSP+
Sbjct: 243 EAAFGMPFVRYWLHNGFVNINNEKMSKSLGNFLTIRDVLQKVHPETVRFFVLSKHYRSPV 302
Query: 376 NYSVVQLESASERIFYIYQTLHDC-EKALSLLDAAALKDSI---PPDTVTSINKFHNDFL 431
++S + A + + +Y TL E+A + ++ A + ++ P+ I F
Sbjct: 303 DFSDETIGEAEKGLERLYGTLGAVKERAAAGVEEAFQEKALRGQDPELFDQIAALSGAFR 362
Query: 432 ASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLA-ALEKTIRNVLTVLGLM 490
+M +D +T L L + + L K+ +LA A IR+ VLGL+
Sbjct: 363 EAMDNDFNTAQALGNLFSLQRHLQRFLDKFGRKQLKGPASALARAGADAIRDHALVLGLL 422
Query: 491 STGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALM 550
+ + R +K LTE +V + IE R AR++K + ++D +R+++ GI L
Sbjct: 423 TREPEAFQAEQRSLKIKSTGLTEAEVERCIELRRQARQDKNFAEADRLREEIEKKGIQLE 482
Query: 551 DSPVGTTWR 559
DSP GT WR
Sbjct: 483 DSPAGTRWR 491
>sp|Q3J8Y9|SYC_NITOC Cysteine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848) GN=cysS PE=3 SV=1
Length = 485
Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust.
Identities = 236/493 (47%), Positives = 309/493 (62%), Gaps = 20/493 (4%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R++E P GKV MYVCG+T YDL H+GHARV V FD++ RYLR G+EV
Sbjct: 2 LRIYNSLTRRKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDMVVRYLRASGFEV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKII RANE GE +L+ RY + H+D L LPP EPR ++ M I
Sbjct: 62 IYVRNITDIDDKIIHRANERGESIHTLTARYIQALHEDEASLQILPPDREPRATESMEAI 121
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
+ M+ Q+LD G+AY+ + GD+Y+ V F YG LSGR LED RAGERV V+ K +P DF
Sbjct: 122 LAMVRQLLDQGYAYQGENGDIYYDVSHFEGYGALSGRHLEDLRAGERVQVNEAKTDPLDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK+AK GEP WESPWGPGRPGWHIECSAMS LG FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKSGEPAWESPWGPGRPGWHIECSAMSIQELGTHFDIHGGGQDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S AA ++YW+HNGFV ++ EKMSKSLGNFFT+R+V+E YHP LR F++ +HYRSP
Sbjct: 242 SEAATGGKFVNYWMHNGFVRLNDEKMSKSLGNFFTVREVLEHYHPEVLRYFILSSHYRSP 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NY+ QL++A + +Y L + A L + + F F +M
Sbjct: 302 LNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLS----WEFTDGGDPFVLRFREAM 357
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T LA L N++ H ++A E +L +R++ +LGL++
Sbjct: 358 DDDFNTPEALALL-------NEVRHALNRAREAGDTEKGQSLAVLLRSLGGILGLLAHEP 410
Query: 495 SEVLLQLREKAL--------KRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546
+ L R+ A + A L+ D + Q + RTVARKNK++ ++D IR L G
Sbjct: 411 EQFLRDSRQVAAIPDTAAAGEEAVLSHDGIEQLVAQRTVARKNKDWAEADRIRGILKDQG 470
Query: 547 IALMDSPVGTTWR 559
I L D+ GT WR
Sbjct: 471 ITLEDTAAGTLWR 483
>sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4)
GN=cysS PE=3 SV=1
Length = 494
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/492 (46%), Positives = 321/492 (65%), Gaps = 12/492 (2%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT++ +E P GKV MYVCGVT YD HIGHAR V FDV+YRYLR LG EV
Sbjct: 3 LRVYNTLTGTKEDFVPIEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYLRSLGLEV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TD+DDKII RAN G ++S R+ +EF +DM L L P+ +P+ ++H+P I
Sbjct: 63 NYVRNYTDIDDKIINRANREGVAYDAISERFIKEFDRDMAQLGLLLPTSQPKATEHIPEI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I ++ ++D GFAY++ GDV F V+KF Y +LS R LED +AG R+ VD RK++P DF
Sbjct: 123 ITLVQTLIDKGFAYQMGGDVNFCVEKFDPYLKLSKRNLEDMQAGARIEVDERKRHPMDFV 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK AK GEPFWESPWG GRPGWHIECSAMS YLG +FDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA + YW+HNGFV I+SEKMSKSLGNFFTI++V++ Y LR FL+ HYRSP+
Sbjct: 243 EAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEVLDKYDSEVLRFFLLSAHYRSPL 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSL--------LDAAALKDSIPPDTVTSINKFH 427
++S L A + IY+ L ++ L+ +DA++L ++ +
Sbjct: 303 DFSDQNLTEAETGMERIYKALVAIDETLASNPATGGEEIDASSLGEA-ERELFDKSGSLP 361
Query: 428 NDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAA-LEKTIRNVLTV 486
F +M DD +T + + + D ++ +N +L + K+++ L +L A ++ I + V
Sbjct: 362 LRFREAMDDDFNTALAMGHIFDLVRCVNRVLS--EAKERSNTLSALCAQVKANIGKIADV 419
Query: 487 LGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546
LG+ ++ + +L +L+++ D++ +++ + I +R ARK K++++SD IR L
Sbjct: 420 LGIFTSEPASLLTRLKDRKASELDISVEEIERLITERAAARKAKDFKRSDEIRDFLLGKN 479
Query: 547 IALMDSPVGTTW 558
I L+DS GT+W
Sbjct: 480 IVLLDSAQGTSW 491
>sp|Q30ZH8|SYC_DESDG Cysteine--tRNA ligase OS=Desulfovibrio desulfuricans (strain G20)
GN=cysS PE=3 SV=1
Length = 485
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/482 (46%), Positives = 309/482 (64%), Gaps = 3/482 (0%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
LYNT++RK+E P+ EGK +YVCG+T YDL H+GHAR V FDVL RYLRH G +V +
Sbjct: 3 LYNTLTRKKEKFIPQREGKASVYVCGITAYDLCHLGHARSSVAFDVLVRYLRHTGLDVTF 62
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
VRNFTDVDDKII RA E G ++ +Y FH+DM L CL +EPR + H+ +I
Sbjct: 63 VRNFTDVDDKIIKRAGETGLTSTEVAEKYMAAFHEDMDRLGCLRADIEPRCTQHIGEMIA 122
Query: 198 MITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFAL 256
+ ++ G AY GDVYF V F YG+LSGR ++D R+G RVA K++P DFAL
Sbjct: 123 LCEDLISKGKAYSTASGDVYFRVRSFASYGKLSGRDVDDMRSGARVAPGEEKEDPLDFAL 182
Query: 257 WKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316
WKSAK GEP+WESPWG GRPGWHIECSAMS +L DIHGGG DLVFPHHENEIAQ+
Sbjct: 183 WKSAKPGEPYWESPWGNGRPGWHIECSAMSEKHLPLPLDIHGGGQDLVFPHHENEIAQTE 242
Query: 317 AACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPIN 376
AA YW+HNGFV +++EKMSKSLGNF TIR +++ Y P LR FL+ HYRSPI+
Sbjct: 243 AATGKEFARYWVHNGFVQVNAEKMSKSLGNFSTIRDILQGYLPETLRYFLLTKHYRSPID 302
Query: 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSD 436
++ ++ A + + IYQTL+ E L +A +P + ++ +++ + +M D
Sbjct: 303 FTFDGMDEAEKNLRRIYQTLNLVENELQKTKWSAA--PLPEEVLSEMDETERAWNEAMED 360
Query: 437 DLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSE 496
DL+T L + ++ +N ++ + +K A ++L ++ + VLGL + +E
Sbjct: 361 DLNTAAALGHIFGLVRLVNRIIEDKTMRKSAQARDALLRMQSMMARWGAVLGLFTRQPAE 420
Query: 497 VLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGT 556
L ++R+ R D+ +V + +R ARK K++E+SDAIR++LA +G+ + D+P G
Sbjct: 421 FLREMRDCRAARRDVDTARVETLLLERQEARKAKDFERSDAIREELARMGVEVQDTPAGA 480
Query: 557 TW 558
W
Sbjct: 481 AW 482
>sp|A1VDQ5|SYC_DESVV Cysteine--tRNA ligase OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=cysS PE=3 SV=1
Length = 485
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/484 (46%), Positives = 304/484 (62%), Gaps = 7/484 (1%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
+YN++SR++EL P V GKV MYVCG+T YDL HIGHAR V FDVL RYLRH G +V +
Sbjct: 3 IYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLDVTF 62
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
RNFTDVDDKII RANE G ++ +Y + F++DM L+ L +EP+ + H+ +I
Sbjct: 63 ARNFTDVDDKIIKRANEEGLTSQQVAEKYIDTFYEDMDRLNVLRADIEPKATGHILEMIA 122
Query: 198 MITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFAL 256
+ +++ G AY GDVYF V FPEYG+LSGR ++D R+G RVA K++P DFAL
Sbjct: 123 LCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGEEKEDPLDFAL 182
Query: 257 WKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316
WKSAK GEP W SPWG GRPGWHIECSAMS ++ DIHGGG DL+FPHHENEIAQ+
Sbjct: 183 WKSAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFPHHENEIAQTE 242
Query: 317 AACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPIN 376
AA + + YW+HNGFV +D+EKMSKSLGNF TIR ++E Y P LR FL+ HYRSPI+
Sbjct: 243 AALDKPFVRYWMHNGFVQVDAEKMSKSLGNFKTIRDILEGYLPEVLRFFLLTKHYRSPID 302
Query: 377 YSVVQLESASERIFYIYQ--TLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
++ ++ A + + IY+ +L E+ S A L P D + F ++
Sbjct: 303 FTFDSMDEAEKSLKRIYEALSLARTERGRSKWSATPL----PADVTAEFDTLDRAFDEAL 358
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DDL+T L + ++ +N LL + +K A L L L+ + + VLG+
Sbjct: 359 EDDLNTAAALGHVFGTIRLVNRLLEDKNLRKSAETLALLERLDGLVAKWMKVLGVFGREP 418
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
L L+E ++R + +V +E+R R K++ ++DAIR +LAA+GI + D+P
Sbjct: 419 EAFLSDLKECRIRRKGIDTTKVDALLEERKSVRAAKDFARADAIRDELAALGIEVRDTPS 478
Query: 555 GTTW 558
G W
Sbjct: 479 GAVW 482
>sp|Q72BQ5|SYC_DESVH Cysteine--tRNA ligase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=cysS PE=3
SV=1
Length = 485
Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/484 (45%), Positives = 305/484 (63%), Gaps = 7/484 (1%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
+YN++SR++EL P V GKV MYVCG+T YDL HIGHAR V FDVL RYLRH G +V +
Sbjct: 3 IYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLDVTF 62
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
RNFTDVDDKII RANE G ++ +Y + F++DM L+ L +EP+ + H+ +I
Sbjct: 63 ARNFTDVDDKIIKRANEEGLTSQQVAEKYIDTFYEDMDRLNVLRADIEPKATGHILEMIA 122
Query: 198 MITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFAL 256
+ +++ G AY GDVYF V FPEYG+LSGR ++D R+G RVA K++P DFAL
Sbjct: 123 LCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGEEKEDPLDFAL 182
Query: 257 WKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316
WK+AK GEP W SPWG GRPGWHIECSAMS ++ DIHGGG DL+FPHHENEIAQ+
Sbjct: 183 WKAAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFPHHENEIAQTE 242
Query: 317 AACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPIN 376
AA + + YW+HNGFV +D+EKMSKSLGNF TIR ++E Y P LR FL+ HYRSPI+
Sbjct: 243 AALDKPFVRYWMHNGFVQVDAEKMSKSLGNFKTIRDILEGYLPEVLRFFLLTKHYRSPID 302
Query: 377 YSVVQLESASERIFYIYQ--TLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
++ ++ A + + IY+ +L E++ S A L P D + F ++
Sbjct: 303 FTFDSMDEAEKSLKRIYEALSLARTERSRSKWSATPL----PADVTAEFDTLDRAFDEAL 358
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DDL+T L + ++ +N LL + +K A L L L+ + + VLG+
Sbjct: 359 EDDLNTAAALGHVFGTIRLVNRLLEDKNLRKSAETLALLERLDGLVAKWMKVLGVFGREP 418
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
L L+E ++R + +V +E+R R K++ ++DAIR +LAA+GI + D+P
Sbjct: 419 EAFLSDLKECRIRRKGIDTTKVDALLEERKSVRAAKDFARADAIRDELAALGIEVRDTPS 478
Query: 555 GTTW 558
G W
Sbjct: 479 GAVW 482
>sp|Q747A2|SYC_GEOSL Cysteine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=cysS PE=3 SV=1
Length = 481
Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/484 (46%), Positives = 307/484 (63%), Gaps = 7/484 (1%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+S +E G+V MYVCGVT YD HIGHAR V FD++YRYLRH GYEV
Sbjct: 3 LRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGYEV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TDVDDKII RAN+ G +S R+ EF +DM L P+ +P+ ++H+ +
Sbjct: 63 TYVRNYTDVDDKIINRANKEGVPFNVISERFIAEFDRDMAALGLDLPTYQPKATEHIAEM 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I +I +++ GFAY DGDVYFSV+ F +Y +LS R LE+ +AG R+ V +K++P DFA
Sbjct: 123 IQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEKKRHPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK +K GEP+W+SPWG GRPGWHIECSAMS YLG +FDIHGGG DLVFPHHENEIAQS
Sbjct: 183 LWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA YWIHNGFV I++EKMSKSLGNFFTI++V+E Y LR FL+ HYRSPI
Sbjct: 243 EAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLESYDAEVLRFFLLSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMS 435
++S L+ A+ + IY L ++A++ A + I + F +M
Sbjct: 303 DFSDQNLKEAAAGLERIYNALAGIDEAVAADGTGAGR--IDEELAEKAAGLPTRFREAMD 360
Query: 436 DDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYS 495
DD +T L + D ++ +N +L + + LA+ + I V VLGL ++
Sbjct: 361 DDFNTAQALGYVFDLVRAVNRVLAEGEIDRAV-----LASAREAIDRVGAVLGLFTSEPG 415
Query: 496 EVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVG 555
+ +L+ + + ++ + IE+R ARK +++ ++D IR LAA GI L+DS G
Sbjct: 416 AFVERLKSRKAAALPIEAAEIERLIEERNAARKARDFRRADEIRDTLAAQGILLLDSAQG 475
Query: 556 TTWR 559
TTW+
Sbjct: 476 TTWK 479
>sp|C4XSW5|SYC_DESMR Cysteine--tRNA ligase OS=Desulfovibrio magneticus (strain ATCC
700980 / DSM 13731 / RS-1) GN=cysS PE=3 SV=1
Length = 485
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/484 (46%), Positives = 300/484 (61%), Gaps = 3/484 (0%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
+ LYNTM+R +E +V GKV MYVCG+T YDL HIGHAR V FDVL RYLRH+G++V
Sbjct: 1 MQLYNTMTRTKEPFVSRVPGKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHIGFDV 60
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+VRNFTDVDDKII +AN G ++ RY F++DM L L P+ EP+ ++++ +
Sbjct: 61 TFVRNFTDVDDKIIKKANAEGTTSQEIAERYIATFYEDMDKLGILRPNAEPKATEYIGEM 120
Query: 196 IDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
+ +++D+G AYR GDVYF V F YG+LSGR +ED R+G RVA K++P DF
Sbjct: 121 ASLAQRLIDSGHAYRTPSGDVYFRVRSFAGYGKLSGRDVEDMRSGARVAPGEEKEDPLDF 180
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
ALWK++K GEP WESP+GPGRPGWH+ECSAMS LG DIHGGG DL+FPHHENEIAQ
Sbjct: 181 ALWKASKPGEPVWESPFGPGRPGWHLECSAMSEKLLGMPIDIHGGGQDLIFPHHENEIAQ 240
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S AA YW+HNGFV I++EKMSKSLGNF TIR + Y P LR FL+ + YRSP
Sbjct: 241 SEAAIGGEFCRYWVHNGFVRINTEKMSKSLGNFITIRDIYARYLPEVLRFFLLSSQYRSP 300
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
++YS L+ A + I IY E+AL + K +P D +++ F A+M
Sbjct: 301 LDYSDQGLDEAEKGIKRIYAAKVQMEQALGRAKWSETK--LPADVTEELSRHEEGFTAAM 358
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DDL+T + + ++ L+ + K E L + VLG+ T
Sbjct: 359 DDDLNTAQAMGHVFGLVRLAGRLMEDKTLAKSRETAEVLGRILADFGVWAEVLGVFGTDA 418
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
+ L L+ L R + +V + +R ARK K++ +SDAIR +LA++G+ +MD+P
Sbjct: 419 TAFLADLKACRLTRLGIDAARVDGLVAERQDARKAKDFARSDAIRDELASLGVTVMDTPT 478
Query: 555 GTTW 558
G W
Sbjct: 479 GPQW 482
>sp|A0L4P8|SYC_MAGSM Cysteine--tRNA ligase OS=Magnetococcus sp. (strain MC-1) GN=cysS
PE=3 SV=1
Length = 490
Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/492 (46%), Positives = 299/492 (60%), Gaps = 17/492 (3%)
Query: 73 STQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLG 132
S + +YNT+ RK+E P + GKVGMYVCGVT YD SHIGHARV V FDV+ R+LR G
Sbjct: 7 SVGITIYNTLGRKKEPFVPMIPGKVGMYVCGVTVYDYSHIGHARVMVVFDVIARHLRVTG 66
Query: 133 YEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHM 192
+++ YVRNFTD+DDKII RANE GE +L++RY + FHQDM L P +EP+ ++H+
Sbjct: 67 FDLTYVRNFTDIDDKIIKRANERGESIQTLTQRYIDAFHQDMAALGVQPADIEPKATEHL 126
Query: 193 PHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPA 252
P ++ MI ++D G AY GDVY++V++F YGQLSG+ L++ AG RV VDS K+NP
Sbjct: 127 PEMMQMIGTLMDKGVAYASGGDVYYAVERFANYGQLSGKVLDEQEAGARVEVDSNKQNPM 186
Query: 253 DFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI 312
DF LWK AK EP W+SPWG GRPGWHIECSAM YLG SFDIHGGG DL+FPHHENEI
Sbjct: 187 DFVLWKGAKPEEPQWDSPWGAGRPGWHIECSAMGTKYLGASFDIHGGGRDLIFPHHENEI 246
Query: 313 AQSCAACNNSHISYWIHNGFVTI-----DSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
AQ+ ++YWIHNGFV + +SEKMSKSLGNF TIR ++ LY LR F++
Sbjct: 247 AQTEGCTGQHAVNYWIHNGFVNVVNEEGESEKMSKSLGNFHTIRDLLALYPGEVLRFFIL 306
Query: 368 GTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDT-VTSINKF 426
+HYRSP+++S LE+A + IY L + L L + + P D +
Sbjct: 307 NSHYRSPLDFSFSLLEAAKAGLDRIYTALRSAQALLGKLPGTPIGE--PADVPAGAPQDL 364
Query: 427 HNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTV 486
++L +M DD +T +A L + K +N + +K +A + IR +
Sbjct: 365 VENYLKAMDDDFNTPQAIAFLFEAAKMLNTAISEQKDPA------VIATWARLIRGLGHH 418
Query: 487 LGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546
LGL + L R L + + I +R+ AR K + +SD IR LA G
Sbjct: 419 LGLAG---QDPELWFRSGIGAEQGLQAEAIEALIAERSAARAAKNWAESDRIRDTLAQQG 475
Query: 547 IALMDSPVGTTW 558
I L D GT W
Sbjct: 476 IVLEDGQHGTQW 487
>sp|A5WEW9|SYC_PSYWF Cysteine--tRNA ligase OS=Psychrobacter sp. (strain PRwf-1) GN=cysS
PE=3 SV=1
Length = 505
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/490 (46%), Positives = 306/490 (62%), Gaps = 17/490 (3%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +Y++M+ + +P GK+GMYVCG+T YD HIGHARV V FDV+ R+LRHLGYEV
Sbjct: 25 LKIYDSMTTNKRSFEPLQAGKIGMYVCGMTVYDYCHIGHARVMVAFDVVSRWLRHLGYEV 84
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKIIARANE GE L+ R+ + H+D L C P EPR ++H+ +
Sbjct: 85 NYVRNITDIDDKIIARANENGEPIGELTHRFIKAMHEDAAALGCENPDAEPRATEHIDEM 144
Query: 196 IDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
+DMI + AY +GDVY++VD F YG+LS RKLED +AG RV VD+ KKNP DF
Sbjct: 145 LDMIGTLEQKQHAYAASNGDVYYAVDTFEGYGKLSKRKLEDLQAGSRVDVDTDKKNPFDF 204
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK+AK GEP W S WG GRPGWHIECSAMS LG+SFDIHGGG DL FPHHENEIAQ
Sbjct: 205 VLWKAAKAGEPQWASSWGGGRPGWHIECSAMSTKCLGNSFDIHGGGHDLQFPHHENEIAQ 264
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S AA ++ W+H GF+ +D EKMSKSLGNFFTIR+VM+ +HP +R F++ +HYRS
Sbjct: 265 SEAATGCTYAHNWMHVGFINVDGEKMSKSLGNFFTIREVMQKFHPETIRFFILSSHYRSQ 324
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFH-----ND 429
+N+S L+ A + IYQ L + L+ +AA +++ SIN H D
Sbjct: 325 VNFSDAALKEAHSGLTRIYQALKAADAVLNTSVSAA-------ESIESINAEHAGTHSAD 377
Query: 430 FLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGL 489
F+A+M+DD +T ++ L K +N L +L+ A + + +L + L
Sbjct: 378 FIAAMNDDFNTPQAISVLFSLAKEVNKLARDADDADTQAQLQLQAVQLRALAGILNIGQL 437
Query: 490 MSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIAL 549
+ LQ + + ++++Q+ I++R ++ NK + ++D IR L GI L
Sbjct: 438 NPAEF----LQAQIGEVAEDQMSDEQIEALIQERLDSKANKNFARADEIRDLLQNSGIEL 493
Query: 550 MDSPVGTTWR 559
D +GTTWR
Sbjct: 494 EDGKLGTTWR 503
>sp|C6E7P0|SYC_GEOSM Cysteine--tRNA ligase OS=Geobacter sp. (strain M21) GN=cysS PE=3
SV=1
Length = 480
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/487 (45%), Positives = 305/487 (62%), Gaps = 14/487 (2%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT++ +E P GKVGMYVCGVT YD HIGHAR V FD++YR+L G EV
Sbjct: 3 LRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRHLLSKGLEV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TD+DDKII RAN G +S R+ +EF DM L P+ +P+ ++H+P I
Sbjct: 63 TYVRNYTDIDDKIINRANRDGVAYNEISERFIKEFDNDMARLMLQLPTFQPKATEHIPEI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I+++ +++D GFAY+ DV++ VD+F Y +LS R LED +AG R+ VD RK++P DFA
Sbjct: 123 INLVQKLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVDERKEHPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK AK GEP+WESPWG GRPGWHIECSAMS +LG + DIHGGG DL+FPHHENEIAQS
Sbjct: 183 LWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA + YW+HNGFV I+SEKMSKSLGNFFTI++++E Y LR FL+ HYRSPI
Sbjct: 243 EAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEILESYDAEVLRFFLLSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMS 435
++S L+ A + IY+ L ++ L+ A D+ + + F F +M
Sbjct: 303 DFSDQNLKEAELGLERIYKALAGIDERLA-SGAHTPADADNTEFAEKVAGFAGRFGDAMD 361
Query: 436 DDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKT---IRNVLTVLGLMST 492
DD +T + L L D ++ IN L T S LEK + + VLG+ +
Sbjct: 362 DDFNTALALGHLFDLVRVINRELPT----------ASTGLLEKVKAEVAKMAAVLGICDS 411
Query: 493 GYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDS 552
+ L +++++ +++ +++ I +R ARK K +++ D IR L I L+DS
Sbjct: 412 VPAAFLQRMKDRKTSDMEMSAEEIETLIAERAEARKAKNFKRGDEIRDLLLEKNIVLLDS 471
Query: 553 PVGTTWR 559
GTTW+
Sbjct: 472 AQGTTWK 478
>sp|B5YID4|SYC_THEYD Cysteine--tRNA ligase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=cysS PE=3 SV=1
Length = 487
Score = 441 bits (1133), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/493 (45%), Positives = 323/493 (65%), Gaps = 23/493 (4%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
++NT++ K E KP + KVG+Y CGVT YDL HIGHAR V FDV+ +YLR+ GYEV +
Sbjct: 3 VFNTLTDKLEEFKPINDKKVGIYACGVTVYDLCHIGHARSAVVFDVIVKYLRYKGYEVKF 62
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
V+NFTD+DDKII RAN+ G ++ +Y E+++DM L +EP+ ++H+ +I+
Sbjct: 63 VKNFTDIDDKIINRANKEGVSWKEIAEKYTGEYYKDMDRLGITRADIEPKATEHINEMIE 122
Query: 198 MITQILDNGFAYRVD----GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPAD 253
+I +++ G+AY ++ VYFSV+KFP+YG+LS +K+++ +G RV VD RKK+P D
Sbjct: 123 IIQTLINKGYAYEIEEGQAKSVYFSVEKFPQYGKLSKKKIDELISGARVEVDERKKSPLD 182
Query: 254 FALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIA 313
FALWK++K GEP+W+SPWG GRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEIA
Sbjct: 183 FALWKASKPGEPWWDSPWGKGRPGWHIECSAMSIKYLGETFDIHGGGADLIFPHHENEIA 242
Query: 314 QSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRS 373
QS A YWIHNGFVTI+ EKMSKSLGN IR ++++Y ALRLFL+ +HYRS
Sbjct: 243 QSEAFTGKPFAKYWIHNGFVTINKEKMSKSLGNVLNIRDLLDIYDAEALRLFLLSSHYRS 302
Query: 374 PINYS---VVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTS-INKFHND 429
PI ++ + + E+ +R++ + D EK + + D K SI D V + + +
Sbjct: 303 PIEFAHEYIKEAEATVDRVYSTIMRIEDFEK-IEIND----KSSIEFDKVKAMLENLKPE 357
Query: 430 FLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGL 489
F +M DD +T L L + +K IN + K Q ++ L ++ I+ + +VL L
Sbjct: 358 FEKAMDDDFNTAKALGILFEFIKEINRFMD--KKPSQNKEIDFLVTAKRAIKEIGSVLNL 415
Query: 490 MS---TGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546
+ LL++++ A+K E+++ + I++RT ARKNK+++K+D+IR+ L + G
Sbjct: 416 FQRQPVDWYRDLLKVKKIAIK-----EEEINRLIKERTEARKNKDWKKADSIREQLLSKG 470
Query: 547 IALMDSPVGTTWR 559
I L D P T W+
Sbjct: 471 IILEDKPDRTIWK 483
>sp|B5EEK6|SYC_GEOBB Cysteine--tRNA ligase OS=Geobacter bemidjiensis (strain Bem / ATCC
BAA-1014 / DSM 16622) GN=cysS PE=3 SV=1
Length = 480
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/488 (45%), Positives = 305/488 (62%), Gaps = 16/488 (3%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT++ +E P GKVGMYVCGVT YD HIGHAR V FD++YR+LR G EV
Sbjct: 3 LRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRHLRSKGLEV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN+TD+DDKII RAN G +S R+ +EF DM L P+ +P+ ++H+P I
Sbjct: 63 TYVRNYTDIDDKIINRANRDGVPYNEISERFIKEFDNDMARLMLQLPTFQPKATEHIPEI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I ++ ++D GFAY+ DV++ VD+F Y +LS R LED +AG R+ VD RK++P DFA
Sbjct: 123 IALVQTLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVDERKEHPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK AK GEP+WESPWG GRPGWHIECSAMS +LG + DIHGGG DL+FPHHENEIAQS
Sbjct: 183 LWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIFPHHENEIAQS 242
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375
AA + YW+HNGFV I+SEKMSKSLGNFFTI++++E Y LR FL+ HYRSPI
Sbjct: 243 EAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEILESYDAEVLRFFLLSAHYRSPI 302
Query: 376 NYSVVQLESASERIFYIYQTLHDC-EKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
++S L+ A + IY+ L E+ S + A D+ + V + F F +M
Sbjct: 303 DFSDQNLKEAELGLERIYKALAGIYERLASGANTPAGADN--AEFVEKVAGFAGRFGDAM 360
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKT---IRNVLTVLGLMS 491
DD +T + L L D ++ IN L T S LE+ + + VLG+
Sbjct: 361 DDDFNTALALGHLFDLVRVINRELPT----------ASTGLLEQAKAEVAKMAAVLGICD 410
Query: 492 TGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMD 551
+ + L +++++ +++ +++ I +R ARK K +++ D IR L I L+D
Sbjct: 411 SVPAAFLQRMKDRKTSDIEMSAEEIEALIAERAEARKAKNFKRGDEIRDLLLEKNIVLLD 470
Query: 552 SPVGTTWR 559
S GTTW+
Sbjct: 471 SAQGTTWK 478
>sp|A7HDA1|SYC_ANADF Cysteine--tRNA ligase OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=cysS PE=3 SV=1
Length = 482
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 234/481 (48%), Positives = 304/481 (63%), Gaps = 19/481 (3%)
Query: 85 KRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDV 144
KREL +P GK+ Y CG T YD +H+GH R YV +D++ R+LR GYEV YVRNFTDV
Sbjct: 13 KREL-QPIEPGKIRFYACGPTVYDSAHVGHGRSYVVWDLVVRHLRARGYEVRYVRNFTDV 71
Query: 145 DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILD 204
DDKII RA E EDP++L+ RY EF +DM L L P V P+VS+H+P I+ MI+ +++
Sbjct: 72 DDKIIRRATERREDPVALAARYAREFDEDMDALGNLRPDVAPKVSEHVPQIVAMISSLVE 131
Query: 205 NGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEG 263
GFAY +GDVYFSV FP+YG+LS R L+D +G RV K++P DFALWK+AK G
Sbjct: 132 KGFAYAAANGDVYFSVRAFPDYGRLSKRNLDDLLSGARVEPGEAKRDPLDFALWKAAKPG 191
Query: 264 EPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN-- 321
EP W+SPWG GRPGWHIECSAM+ A+LG D+HGGG DLVFPHH NEIAQS AA +
Sbjct: 192 EPTWDSPWGGGRPGWHIECSAMTLAHLGVPIDLHGGGKDLVFPHHTNEIAQSAAAVGDGR 251
Query: 322 ---SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYS 378
S +W+H+GFV IDSEKMSKSLGNFFT+R V+ + +RLF +GTHYR+PINYS
Sbjct: 252 TAESFCRHWMHHGFVEIDSEKMSKSLGNFFTLRDVLAKFDAEGVRLFYLGTHYRNPINYS 311
Query: 379 VVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDL 438
L A R+ Y Y+TL + AL + P D ++ DD
Sbjct: 312 DAILAEAERRLNYFYETLEKVD---------ALAEGTSP--AGEGGGVVEDARRALDDDF 360
Query: 439 HTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVL 498
+ VLA L++ N L ++GKK LAA + +R + T LGL+ +E L
Sbjct: 361 NAPQVLAVLAEAFTAAN-ALADKRGKKTPEDRARLAAFARDVREIGTTLGLVQRRPAEAL 419
Query: 499 LQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTW 558
+R +A R + V +I +R AR+ +++ +SDAIR L A G+ALMD P GTTW
Sbjct: 420 RAIRARAAARRGIDPASVEAKIVERAEARRARDFARSDAIRDALLAQGVALMDGPQGTTW 479
Query: 559 R 559
+
Sbjct: 480 K 480
>sp|B8DKL0|SYC_DESVM Cysteine--tRNA ligase OS=Desulfovibrio vulgaris (strain Miyazaki F
/ DSM 19637) GN=cysS PE=3 SV=1
Length = 485
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/487 (44%), Positives = 299/487 (61%), Gaps = 13/487 (2%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
LYNT++RK+E +P V GKV MYVCG+T YDL HIGHAR V FDVL RYLRH G +V +
Sbjct: 3 LYNTLTRKKEHFEPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLDVTF 62
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
RNFTDVDDKII RAN+ G ++ +Y F++DM L+ L +EPR + H+ +I
Sbjct: 63 ARNFTDVDDKIITRANQEGLTSQEVAEKYIATFYEDMDRLNVLRADLEPRATTHIEEMIS 122
Query: 198 MITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFAL 256
+ ++++ AY GDVYF V FP YG+LSGR ++D R+G RVA K++P DFAL
Sbjct: 123 LCVRLIEQDKAYATPSGDVYFRVRAFPGYGKLSGRDVDDLRSGARVAPGEEKEDPLDFAL 182
Query: 257 WKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316
WK+AK GEPFWESPWG GRPGWHIECSAMS +L DIHGGG DLVFPHHENEIAQ+
Sbjct: 183 WKAAKPGEPFWESPWGNGRPGWHIECSAMSEKHLPLPLDIHGGGQDLVFPHHENEIAQTE 242
Query: 317 AACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPIN 376
AA + YW+HNGFV +++EKMSKSLGNF TIR ++E Y P LR FL+ HYRSPI+
Sbjct: 243 AALGKDFVRYWVHNGFVQVNAEKMSKSLGNFRTIRDILENYLPETLRYFLLTKHYRSPID 302
Query: 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDS-----IPPDTVTSINKFHNDFL 431
++ ++ A + + IY+ AL LL A ++ +P D F
Sbjct: 303 FTFESMDEAEKNLKRIYE-------ALGLLHAELEREKWTSGPLPKDVTEEFEGLRQAFA 355
Query: 432 ASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMS 491
+M DD++T L + ++ N +L + +K A+ VLG+
Sbjct: 356 DAMEDDMNTAAALGHVFTMVRLANRILDNKGQRKTEGARAFFRAVLDEAATWFAVLGVFG 415
Query: 492 TGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMD 551
+ L +LR + R + +V + ++ R AR +K++ ++DAIR ++AA+GI + D
Sbjct: 416 REPAGFLAELRACRVARKGIDPAKVEELLQARINARADKDFARADAIRDEIAALGIEVRD 475
Query: 552 SPVGTTW 558
+P G W
Sbjct: 476 TPSGAVW 482
>sp|B8GNT5|SYC_THISH Cysteine--tRNA ligase OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=cysS PE=3 SV=1
Length = 460
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/485 (45%), Positives = 296/485 (61%), Gaps = 29/485 (5%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L ++N+++R++E P G+V MYVCG+T YD H+GHARV V FDV+YRYL+ LG++V
Sbjct: 2 LQIHNSLTRRKETFTPMEPGRVRMYVCGMTVYDYCHLGHARVLVVFDVVYRYLKALGFDV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
Y+RN TD+DDKII RA E GED +L+ R+ H+D L LPPS EPR ++H+ +
Sbjct: 62 TYIRNITDIDDKIIRRAAENGEDIRALTDRFIAAMHEDAEALGVLPPSAEPRATEHIDGM 121
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
+ MI +++ G+AY D GDVY++V KF YG+LSG++LED RAGERVA D K++P DF
Sbjct: 122 LAMIGTLVERGYAYAGDNGDVYYAVAKFEPYGRLSGKRLEDLRAGERVAPDEAKRDPLDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK+AK GEP W+SPWGPGRPGWHIECSAMS YLG+ FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTHYLGNHFDIHGGGQDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S AA ++YW+HNGFV ++ EKMSKSLGNFFT+R+V+ Y +R F++ +HYRSP
Sbjct: 242 SEAATCEHFVNYWMHNGFVRVNEEKMSKSLGNFFTVREVLARYPAEVVRYFILSSHYRSP 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS L++A + +Y L + + +D A + + F A+M
Sbjct: 302 LNYSDEPLDAARAGLTRLYTAL----RGVQAVDPAGQGEG-----------YRRRFQAAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T V +A L D + +N L + + G
Sbjct: 347 DDDFNTPVAMAVLFDIARELNRLRDEDPAGAAPLAGLLRELGGMLGLLAGDPEAFLKGGE 406
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
+ DL E + I R ARK K++ ++D IR +LA G+ L D P
Sbjct: 407 A-------------GDLDEAAIEALIAQRLAARKAKDFAEADRIRDELAGQGVVLEDGPG 453
Query: 555 GTTWR 559
GTTWR
Sbjct: 454 GTTWR 458
>sp|Q0HTK4|SYC_SHESR Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=cysS PE=3
SV=1
Length = 461
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/488 (46%), Positives = 300/488 (61%), Gaps = 36/488 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R+++ KP GKVGMYVCGVT YDL HIGH R +V+FD++ RYLR+ GYEV
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 63
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+ RN TD+DDKII RANE ED +L+ R E H+D L+ + P EPR + H+ I
Sbjct: 64 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHIAEI 123
Query: 196 IDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
IDM+ ++L G AY DGDV FSV FPEYG+LSG+ LE +AG RV VD K+NP DF
Sbjct: 124 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 183
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +K GEP WESPWGPGRPGWHIECSAM++ +LG FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A + +++YW+H G V +D EKMSKSLGNFFTIR V+ Y P +R FL+ HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDPETVRYFLLSGHYRSQ 303
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
INYS L+ A + +Y + D + L++ A A +F F A+M
Sbjct: 304 INYSEENLKQARAALERLYTAIKDVD--LTVAPAPA-------------EEFVAKFKAAM 348
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D ++ IN L T + AM + ++ + VLG
Sbjct: 349 DDDFNTPEAYSVLFDMVREINRLKTTDMAQASAMAV--------AMKQLADVLG------ 394
Query: 495 SEVLLQLREKALKRADLTEDQVLQ---RIEDRTVARKNKEYEKSDAIRKDLAAVGIALMD 551
LL A + + ++D+V + I +R AR K++ +D R L +G+ L D
Sbjct: 395 ---LLHQAPDAFFKGEGSDDEVAEIEALIVERNRARAEKDWPAADVARNRLNELGVVLED 451
Query: 552 SPVGTTWR 559
P GTTWR
Sbjct: 452 GPSGTTWR 459
>sp|Q0HH98|SYC_SHESM Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=cysS PE=3
SV=1
Length = 461
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/488 (46%), Positives = 300/488 (61%), Gaps = 36/488 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R+++ KP GKVGMYVCGVT YDL HIGH R +V+FD++ RYLR+ GYEV
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 63
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+ RN TD+DDKII RANE ED +L+ R E H+D L+ + P EPR + H+ I
Sbjct: 64 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHITEI 123
Query: 196 IDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
IDM+ ++L G AY DGDV FSV FPEYG+LSG+ LE +AG RV VD K+NP DF
Sbjct: 124 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 183
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +K GEP WESPWGPGRPGWHIECSAM++ +LG FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A + +++YW+H G V +D EKMSKSLGNFFTIR V+ Y P +R FL+ HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDPETVRYFLLSGHYRSQ 303
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
INYS L+ A + +Y + D + L++ A A +F F A+M
Sbjct: 304 INYSEENLKQARAALERLYTAIKDVD--LTVAPAPA-------------EEFVAKFKAAM 348
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D ++ IN L T + AM + ++ + VLG
Sbjct: 349 DDDFNTPEAYSVLFDMVREINRLKTTDMAQASAMAV--------AMKQLADVLG------ 394
Query: 495 SEVLLQLREKALKRADLTEDQVLQ---RIEDRTVARKNKEYEKSDAIRKDLAAVGIALMD 551
LL A + + ++D+V + I +R AR K++ +D R L +G+ L D
Sbjct: 395 ---LLHQAPDAFFKGEGSDDEVAEIEALIVERNRARVEKDWPAADVARNRLNELGVVLED 451
Query: 552 SPVGTTWR 559
P GTTWR
Sbjct: 452 GPSGTTWR 459
>sp|A0KYM2|SYC_SHESA Cysteine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=cysS PE=3
SV=1
Length = 461
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/488 (46%), Positives = 296/488 (60%), Gaps = 36/488 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R+++ KP GKVGMYVCGVT YDL HIGH R +V+FD++ RYLR+ GYEV
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 63
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+ RN TD+DDKII RANE ED +L+ R E H+D L+ + P EPR + H+ I
Sbjct: 64 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHIAEI 123
Query: 196 IDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
IDM+ ++L G AY DGDV FSV FPEYG+LSG+ LE +AG RV VD K+NP DF
Sbjct: 124 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 183
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +K GEP WESPWGPGRPGWHIECSAM++ +LG FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A + +++YW+H G V +D EKMSKSLGNFFTIR V+ Y +R FL+ HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 303
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
INYS L+ A + +Y + D + + T +F F A+M
Sbjct: 304 INYSEENLKQARAALERLYTAIKDVDLTV---------------TAAPAEEFVAKFKAAM 348
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D ++ IN L T + AM + ++ + VLG
Sbjct: 349 DDDFNTPEAYSVLFDMVREINRLKTTDMAQASAMAV--------AMKQLADVLG------ 394
Query: 495 SEVLLQLREKALKRADLTEDQVLQ---RIEDRTVARKNKEYEKSDAIRKDLAAVGIALMD 551
LL A + + ++D+V + I +R AR K++ +D R L +G+ L D
Sbjct: 395 ---LLHQAPDAFFKGEGSDDEVAEIEALIVERNRARAEKDWPAADVARNRLNELGVVLED 451
Query: 552 SPVGTTWR 559
P GTTWR
Sbjct: 452 GPSGTTWR 459
>sp|A1S4X2|SYC_SHEAM Cysteine--tRNA ligase OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=cysS PE=3 SV=1
Length = 459
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/485 (47%), Positives = 299/485 (61%), Gaps = 30/485 (6%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN++SR++E KP GK+GMYVCGVT YDL HIGH R +V FD++ RYLR+ GYEV
Sbjct: 2 LKIYNSISRQKEEFKPIQPGKIGMYVCGVTIYDLCHIGHGRTFVCFDMIVRYLRYRGYEV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
Y RN TDVDDKII RANE GE SL+ R E H D L+ + PS EPR + H+ I
Sbjct: 62 NYQRNITDVDDKIIKRANENGESCDSLTERLIGEMHADFDALNMVRPSFEPRATLHIDEI 121
Query: 196 IDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
IDM+T++LD G AY DGDV F V + YG+LSG+ LE +AG RV VD K+NP DF
Sbjct: 122 IDMVTRLLDRGHAYVAADGDVLFDVSSYAAYGRLSGQDLEQLQAGARVEVDENKRNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +K GEP W+SPWGPGRPGWHIECSAM++ +LG FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A + +++ W+H G V +D EKMSKSLGNFFTIR V+ Y +R FL+ HYRS
Sbjct: 242 SCCAHDTPYVNTWMHTGMVMVDREKMSKSLGNFFTIRDVLAHYDAQTVRYFLLSGHYRSQ 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS L+ A + +Y L K L L AA D +F + F+A+M
Sbjct: 302 LNYSEDNLKQARASLERMYTAL----KGLDLTVEAAGAD-----------EFVSRFMAAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D ++ IN L + + + + L ++ + VLG++S+
Sbjct: 347 DDDFNTPEAYSVLFDMVREINRL--------KTSDMAAASQLGVALKELAEVLGILSS-T 397
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
E LQ A + A++ I +R AR K++ +D R L A+G+ L D P
Sbjct: 398 PEAFLQGEGNADEVAEIE-----ALIVERNRARAEKDWPAADVARDRLNALGVVLEDGPE 452
Query: 555 GTTWR 559
GTTWR
Sbjct: 453 GTTWR 457
>sp|Q60BG8|SYC_METCA Cysteine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=cysS PE=3 SV=1
Length = 465
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/490 (46%), Positives = 301/490 (61%), Gaps = 34/490 (6%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R++E +P +V MYVCG+T YD H+GHARV V FD++ RYLRHLG +V
Sbjct: 2 LKIYNSLTRQKEEFRPLEPRRVRMYVCGMTVYDYCHLGHARVMVVFDMVARYLRHLGLKV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKII RA E GE +L+ R+ E H+D L LPP EPR ++ + I
Sbjct: 62 TYVRNVTDIDDKIIRRAVENGETIGALTARFIEAMHEDERALGVLPPDHEPRATESIDDI 121
Query: 196 IDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
+ MI +++ G AY +GDV+++V FP YG+LSG+ L++ RAGER+ VD K++P DF
Sbjct: 122 LAMIGTLIERGHAYVGSNGDVFYAVASFPNYGRLSGKNLDELRAGERIEVDEAKRDPLDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWKSAK GEPFW SPWGPGRPGWHIECSAMS LG FDIHGGGMDL FPHHENEIAQ
Sbjct: 182 VLWKSAKPGEPFWASPWGPGRPGWHIECSAMSTRCLGAHFDIHGGGMDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S A ++YW+HNGFV I+ EKMSKSLGNFFT+R+++ Y P +R F++ +HYRSP
Sbjct: 242 SEGATGEHFVNYWMHNGFVRINEEKMSKSLGNFFTVREILARYRPEVVRFFILNSHYRSP 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS L+ A+ + +Y L L L P F + F +M
Sbjct: 302 LNYSDENLDEAAAALSRLYTALRGLAPDLPL-----------PLGEDRDEGFSSRFADAM 350
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T +A L D + IN R + + +L A K++ NVL
Sbjct: 351 QDDFNTPEAIAVLFDLAREIN-----RHKAAEPAKAAALGATLKSLGNVLG--------- 396
Query: 495 SEVLLQLREKALKRAD-----LTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIAL 549
LLQ +A ++D L++ + RI R ARK K + +SD IR +L A GI L
Sbjct: 397 ---LLQTDPEAYFKSDAGGSGLSDADIETRIRARLEARKAKNWAESDRIRDELKAQGIIL 453
Query: 550 MDSPVGTTWR 559
DS GTTWR
Sbjct: 454 EDSAAGTTWR 463
>sp|B0TC35|SYC_HELMI Cysteine--tRNA ligase OS=Heliobacterium modesticaldum (strain ATCC
51547 / Ice1) GN=cysS PE=3 SV=1
Length = 481
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/495 (45%), Positives = 312/495 (63%), Gaps = 25/495 (5%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+SR++E P G+VGMYVCG T YD H+G+AR V FD + RYL H+GYEV
Sbjct: 3 LRVYNTLSREKETFVPHKAGRVGMYVCGPTTYDYIHLGNARPLVVFDTIRRYLEHVGYEV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
Y++NFTD+DDKII RA E+GEDPI+++ R+ EE+++D L+ P ++ P+VS HM I
Sbjct: 63 VYIQNFTDIDDKIIHRAKEIGEDPIAMAARFVEEYYRDAKALNVRPATIHPKVSAHMAEI 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I MI +++ G AY + GDVYFS+ F +YG+LSGR LED +AG RV V+ RK++P DFA
Sbjct: 123 IAMIGVLVEKGHAYELGGDVYFSIPSFKDYGKLSGRSLEDLQAGARVDVNERKRHPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK AK GEP W+SPWG GRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEIAQS
Sbjct: 183 LWKGAKPGEPSWDSPWGKGRPGWHIECSAMSRKYLGDAFDIHGGGQDLIFPHHENEIAQS 242
Query: 316 CAACNNSHIS-YWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
A S ++ YW+HNGF+T++ EKMSKSLGNFFT+R++++ + +R +L+ THYRSP
Sbjct: 243 EACTGTSPMARYWLHNGFITVNQEKMSKSLGNFFTLREILKRFPGDVIRFYLLSTHYRSP 302
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLA-- 432
I++ +LE+A + + + + E+AL+ A+ + + P K +LA
Sbjct: 303 IDFDDSKLEAAQKGLQRLRTSRRLIEEALA---ASGKEGAERP--AGQREKLEEQWLAAK 357
Query: 433 -----SMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL 487
+M DD +T + L+ L D + N LH R + L + +T + VL
Sbjct: 358 KGFREAMDDDFNTALALSMLFDLAREANTFLHGGFALTPEDR-QLLLQVAETFEELAGVL 416
Query: 488 GLMSTGYSEVLLQLREKALKRADLTEDQVLQ-RIEDRTVARKNKEYEKSDAIRKDLAAVG 546
G + L A D T D ++ I R ARK K++ +D IR L +G
Sbjct: 417 G----------IDLAGGAAAADDNTVDGLMNLLIGIRAEARKKKDWATADRIRDGLKELG 466
Query: 547 IALMDSPVGTTWRPA 561
I + D+P G W+ A
Sbjct: 467 IVIEDTPQGARWKKA 481
>sp|C4LG04|SYC_TOLAT Cysteine--tRNA ligase OS=Tolumonas auensis (strain DSM 9187 / TA4)
GN=cysS PE=3 SV=1
Length = 463
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/488 (47%), Positives = 303/488 (62%), Gaps = 33/488 (6%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT++R++E KP GKVGMYVCGVT YDL HIGH R +V FDV+ RYLR+LGY+V
Sbjct: 2 LKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDLCHIGHGRTFVAFDVVVRYLRYLGYDV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+VRN TDVDDKII RA E E +L+ R + H D L P +EPR + H+ I
Sbjct: 62 TFVRNITDVDDKIIKRAAENAESCDALTERLIGDMHADFDALKLQRPDIEPRATQHIGEI 121
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I ++ +LD +AY D GDV FS+D FPEYG+LSG+ +E +AG RV V+ K+NP DF
Sbjct: 122 ITLVQSLLDQNYAYVADSGDVLFSIDSFPEYGRLSGQNIEQLQAGARVDVEESKRNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +K GEP W+SPWG GRPGWHIECSAM++ +LGH FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPMWDSPWGAGRPGWHIECSAMNSKHLGHHFDIHGGGSDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A + +++ W+H+G V +D EKMSKSLGNFFTIR V+++Y +R FL+ HYRSP
Sbjct: 242 SCCAHHTPYVNTWMHSGMVMVDEEKMSKSLGNFFTIRDVLKVYDAETVRYFLMSGHYRSP 301
Query: 375 INYSVVQLESAS---ERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFL 431
+NYS + L+ A ER++ + + D E+ +L S P F F
Sbjct: 302 LNYSDLNLQQARASLERLYTALRGVEDGEEQAAL--------SAP---------FDERFK 344
Query: 432 ASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMS 491
A+M DD +T + L D + +N KQ +++ AL +R + VLGL+
Sbjct: 345 AAMDDDFNTPEAYSVLFDLARDLNR-------AKQDSPADAV-ALAACLRRLGGVLGLLQ 396
Query: 492 TGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMD 551
E LQ A + D+ E ++L I+ R AR +K + +D R L +GI L D
Sbjct: 397 Q-QPEQFLQ-SGAAAETDDVAEIELL--IKTRNDARASKNWALADEARNKLTEMGIVLED 452
Query: 552 SPVGTTWR 559
P GTTWR
Sbjct: 453 GPQGTTWR 460
>sp|C5A739|SYC_THEGJ Cysteine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=cysS PE=3 SV=1
Length = 476
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/482 (45%), Positives = 295/482 (61%), Gaps = 14/482 (2%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
+YNT++R++E KP EG+V MYVCG T YD H+GHAR Y+ FDV+ RYL H GY V
Sbjct: 5 IYNTLTRQKEEFKPLHEGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGYTVLM 64
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
V NFTD+DDKII RANE GEDP L+ ++ F +DM L P + PRV++HM II
Sbjct: 65 VMNFTDIDDKIIKRANETGEDPKELAEKFLRIFLEDMKALKVKPADIYPRVTEHMQDIIS 124
Query: 198 MITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALW 257
I ++ + G+AY VYF V KF +YG+LS KLED G RV K+NP DFALW
Sbjct: 125 FIKKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKIKLEDLVKGARVEPGEGKRNPEDFALW 184
Query: 258 KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCA 317
K AK GEP WESPWG GRPGWHIECS MS+ YLG SFDIHGGG DL+FPHHENEIAQS A
Sbjct: 185 KKAKPGEPKWESPWGEGRPGWHIECSTMSSKYLGESFDIHGGGNDLIFPHHENEIAQSEA 244
Query: 318 ACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINY 377
+ + YW+H GF+ ++ EKMSKSLGNF T+R++++ Y+P +RLF++ HYRSP++Y
Sbjct: 245 CFGHEWVHYWMHTGFLMVNGEKMSKSLGNFVTVRELLKRYNPEVIRLFVLQRHYRSPLDY 304
Query: 378 SVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDD 437
S +E A + +Y TL + A+S + + D +I F +M DD
Sbjct: 305 SEEGIEHAKNNLERLYNTLENIRVAMSKAEISFRWDEPEFRAYEAIRDARKKFYEAMDDD 364
Query: 438 LHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEV 497
+T L A+ + IN L + K+++ L + ++V V GL + E
Sbjct: 365 FNTAEALKAVFEVSNAINRYLTEVEKPKESI----LRKAWEFFKDVGEVFGLFEDYFKE- 419
Query: 498 LLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTT 557
++A+ E+ + +E R RK K+++ +D IR++L +GI L D+P GT
Sbjct: 420 ---------QKAENDEELINLLVEVRAQLRKEKKFDLADKIREELRKLGIQLEDTPQGTV 470
Query: 558 WR 559
W+
Sbjct: 471 WK 472
>sp|Q8EG22|SYC_SHEON Cysteine--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=cysS PE=3 SV=1
Length = 459
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/488 (46%), Positives = 299/488 (61%), Gaps = 36/488 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R+++ KP GKVGMYVCGVT YDL HIGH R +V+FD++ RYLR+ GYEV
Sbjct: 2 LKIYNSITRQKQEFKPINPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+ RN TD+DDKII RANE ED +L+ R E H+D L+ P EPR + H+ I
Sbjct: 62 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMKRPDFEPRATLHIAEI 121
Query: 196 IDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
IDM+ ++L G AY DGDV FSV FPEYG+LSG+ LE +AG RV VD K+NP DF
Sbjct: 122 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +K GEP WESPWGPGRPGWHIECSAM++ +LG FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A + +++YW+H G V ID EKMSKSLGNFFTIR V+ Y +R FL+ HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMIDREKMSKSLGNFFTIRDVLSHYDAETVRYFLLSGHYRSQ 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
INYS L+ A + +Y + D + L++ A A +F F A+M
Sbjct: 302 INYSEENLKQARAALERLYTAIKDVD--LTVAAAPA-------------EEFVAKFKAAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D ++ IN L T + +AL +++ + VLG
Sbjct: 347 DDDFNTPEAYSVLFDMVREINRLKLT--------DMAEASALAVSMKQLADVLG------ 392
Query: 495 SEVLLQLREKALKRADLTEDQVLQ---RIEDRTVARKNKEYEKSDAIRKDLAAVGIALMD 551
LL A + + ++D+V + I +R AR K++ +D R L +G+ L D
Sbjct: 393 ---LLHQSPDAFFKGEGSDDEVAEIEALIVERNRARTEKDWPAADVARNRLNELGVVLED 449
Query: 552 SPVGTTWR 559
P GTTWR
Sbjct: 450 GPSGTTWR 457
>sp|Q250Q6|SYC_DESHY Cysteine--tRNA ligase OS=Desulfitobacterium hafniense (strain Y51)
GN=cysS PE=3 SV=1
Length = 477
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/485 (44%), Positives = 305/485 (62%), Gaps = 15/485 (3%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L L+NTMS ++E KP+ EGKVGMY CG T Y+ H+G+ R+ V FD++ RYL + GY+V
Sbjct: 3 LRLFNTMSHQKEEFKPREEGKVGMYTCGPTVYNYFHVGNGRMLVVFDMIRRYLLYKGYDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+V+NFTD+DDKII R E G DP+ L++ Y E+ +D L+ +P S+ P+ +DH+P +
Sbjct: 63 TFVQNFTDIDDKIIKRGQEEGRDPLELAQDYIGEYFKDAAALNLMPASIHPKATDHIPEM 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I++I + + G AY VDGDVYF+VDK P YG+LSGR LED +AG RV V RK+NP DFA
Sbjct: 123 IEIIKGLEEQGLAYAVDGDVYFAVDKLPAYGKLSGRTLEDMQAGARVEVGERKQNPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK+AK GEPFWESPWG GRPGWHIECSAMS YLG FDIHGGG DLVFPHHENEIAQ+
Sbjct: 183 LWKNAKPGEPFWESPWGKGRPGWHIECSAMSLKYLGSGFDIHGGGGDLVFPHHENEIAQA 242
Query: 316 CAACNNSHIS-YWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
+ + YW+HN F+TI+ +KMSKSLGNFFT+R+++E + +R +L+GTHYRSP
Sbjct: 243 EGYLHGETFARYWMHNAFLTINQQKMSKSLGNFFTVREILEHFPGEVIRFYLLGTHYRSP 302
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+++ L+ A + + + ++ ++AL + + + + +F +M
Sbjct: 303 LDFDDENLQMAQKGLERLQTSIRLADEALGRQGQNSADAASGQKLRAAAEEARREFAEAM 362
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD ++ + A+L + K IN H + + E L T+ + VLG
Sbjct: 363 DDDFNSALAYASLFELGKAIN--AHVQAYPYSS---EGLLKARATLWELADVLGFD---- 413
Query: 495 SEVLLQLREKALKRADLTEDQVLQ-RIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSP 553
L + + DQV++ +E R +ARK K++E SD IR L +GI L D+P
Sbjct: 414 ----LAKPANQAEAGNQKLDQVMELLLEVRAIARKKKDWEMSDLIRDRLKDLGIVLEDTP 469
Query: 554 VGTTW 558
G W
Sbjct: 470 QGARW 474
>sp|B8G1U2|SYC_DESHD Cysteine--tRNA ligase OS=Desulfitobacterium hafniense (strain DCB-2
/ DSM 10664) GN=cysS PE=3 SV=1
Length = 477
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/485 (44%), Positives = 305/485 (62%), Gaps = 15/485 (3%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L L+NTMS ++E KP+ EGKVGMY CG T Y+ H+G+ R+ V FD++ RYL + GY+V
Sbjct: 3 LRLFNTMSHQKEEFKPREEGKVGMYTCGPTVYNYFHVGNGRMLVVFDMIRRYLLYKGYDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+V+NFTD+DDKII R E G DP+ L++ Y E+ +D L+ +P S+ P+ +DH+P +
Sbjct: 63 TFVQNFTDIDDKIIKRGQEEGRDPLELAQDYIGEYFKDAAALNLMPASIHPKATDHIPEM 122
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255
I++I + + G AY VDGDVYF+VDK P YG+LSGR LED +AG RV V RK+NP DFA
Sbjct: 123 IEIIKGLEEQGLAYAVDGDVYFAVDKLPAYGKLSGRTLEDMQAGARVEVGERKQNPMDFA 182
Query: 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQS 315
LWK+AK GEPFWESPWG GRPGWHIECSAMS YLG FDIHGGG DLVFPHHENEIAQ+
Sbjct: 183 LWKNAKPGEPFWESPWGKGRPGWHIECSAMSLKYLGSGFDIHGGGGDLVFPHHENEIAQA 242
Query: 316 CAACNNSHIS-YWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
+ + YW+HN F+TI+ +KMSKSLGNFFT+R+++E + +R +L+GTHYRSP
Sbjct: 243 EGYLHGETFARYWMHNAFLTINQQKMSKSLGNFFTVREILEHFPGEVIRFYLLGTHYRSP 302
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+++ L+ A + + + ++ ++AL + + + + +F +M
Sbjct: 303 LDFDDENLQMAQKGLERLQTSIRLADEALGRQGQNSADAASGQKLRAAAEEARREFAEAM 362
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD ++ + A+L + K IN H + + E L T+ + VLG
Sbjct: 363 DDDFNSALAYASLFELGKAIN--AHVQAYPYSS---EGLLKARATLWELADVLGFD---- 413
Query: 495 SEVLLQLREKALKRADLTEDQVLQ-RIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSP 553
L + + DQV++ +E R +ARK K++E SD IR L +GI L D+P
Sbjct: 414 ----LAKPANQAEAGNQKLDQVMELLLEVRAIARKKKDWEMSDLIRDRLKDLGIVLEDTP 469
Query: 554 VGTTW 558
G W
Sbjct: 470 QGARW 474
>sp|B8E5F2|SYC_SHEB2 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS223) GN=cysS
PE=3 SV=1
Length = 459
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/488 (46%), Positives = 300/488 (61%), Gaps = 36/488 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R+++ KP GK+GMYVCGVT YDL HIGH R +V+FD++ RYLR+ GYEV
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+ RN TDVDDKII RANE E +L+ R E HQD L+ L P EPR + H+ I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHQDFDALNMLRPDFEPRATLHIAEI 121
Query: 196 IDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
IDM+ +L G AY DGDV FSV +P+YG+LSG+ L+ +AG RV VD K+NP DF
Sbjct: 122 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDETKQNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +K GEP WESPWGPGRPGWHIECSAM++ +LG FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A + +++YW+H G V +D EKMSKSLGNFFTIR V+ Y +R FL+ HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS L+ A + +Y + D + L++ A A +F F A+M
Sbjct: 302 LNYSEDNLKQARSALERLYTAIKDVD--LTVAAAPA-------------EEFVAKFKAAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D ++ IN L T + +AL T++ + VLGL+S
Sbjct: 347 DDDFNTPEAYSVLFDMVREINRLKLT--------DMAQASALAVTLKQLADVLGLLSQ-- 396
Query: 495 SEVLLQLREKALKRADLTEDQVLQ---RIEDRTVARKNKEYEKSDAIRKDLAAVGIALMD 551
+A + ++D+V + I +R AR K++ +D R L +G+ L D
Sbjct: 397 -------EPEAFFQGGGSDDEVAEIEALIVERNRARTEKDWAAADVARNRLNELGVELED 449
Query: 552 SPVGTTWR 559
SP GTTWR
Sbjct: 450 SPSGTTWR 457
>sp|Q2IQG7|SYC_ANADE Cysteine--tRNA ligase OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=cysS PE=3 SV=1
Length = 481
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 238/483 (49%), Positives = 308/483 (63%), Gaps = 20/483 (4%)
Query: 83 SRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFT 142
++KRELV P GK+ +YVCG T YD SH+GHAR YV +DV+ R+LR G EV +VRNFT
Sbjct: 11 AQKRELV-PLEPGKLRLYVCGPTVYDYSHLGHARCYVVWDVVVRHLRARGLEVRFVRNFT 69
Query: 143 DVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQI 202
DVDDKII RANE GEDPI+L+ R+ + FH+DM L L P VEPRVS H+P I+ +I ++
Sbjct: 70 DVDDKIIQRANERGEDPIALASRFADAFHEDMDALGNLRPDVEPRVSGHIPEIVALIARL 129
Query: 203 LDNGFAYR-VDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAK 261
++ GFAY +GDVY++V KFPEYG+LS R L+D AG RV K++P DFALWK+AK
Sbjct: 130 VERGFAYAPGNGDVYYAVRKFPEYGRLSKRNLDDLIAGARVEPGEAKRDPLDFALWKAAK 189
Query: 262 EGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN 321
GEP W+SPWG GRPGWHIECSAM+ +LG D+H GG DLVFPHH NEIAQS AA ++
Sbjct: 190 PGEPAWDSPWGKGRPGWHIECSAMTQKHLGAPIDLHAGGKDLVFPHHTNEIAQSVAATSD 249
Query: 322 S-----HISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPIN 376
YW+HNGFV ID EKMSKSLGNFFTIR V+ + ALR FL+GTHYR N
Sbjct: 250 GLHAEDFARYWMHNGFVQIDDEKMSKSLGNFFTIRDVLARFDGEALRFFLLGTHYRRDFN 309
Query: 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSD 436
+S L A R+ +Y+T+ E+ A ++ P V A++ D
Sbjct: 310 FSDQVLAEAERRLSALYETVEKAERL-----GAGVEPGAEPAFVERAR-------AALDD 357
Query: 437 DLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSE 496
D +T VL +++ N L RKGKK LAA + R V VLG++ ++
Sbjct: 358 DFNTPQVLGIVAEAFTEAN-ALADRKGKKSPEEKARLAAFARGARAVGAVLGILGRPPAQ 416
Query: 497 VLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGT 556
L +R++A R + +V + I +R AR K++ +SDAIR L A G+ LMD P GT
Sbjct: 417 ALSAIRDRAAARRGIDGSEVERLIAERAAARAAKDFARSDAIRDGLLARGVVLMDGPQGT 476
Query: 557 TWR 559
TW+
Sbjct: 477 TWK 479
>sp|B6YUQ3|SYC_THEON Cysteine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=cysS PE=3 SV=1
Length = 476
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/483 (45%), Positives = 292/483 (60%), Gaps = 16/483 (3%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
+YNT+++++E +P EG+V MYVCG T YD +H+GHAR Y+ FDV+ RYL H GY V
Sbjct: 5 VYNTLTKQKEEFRPLREGEVRMYVCGPTVYDYTHLGHARTYIAFDVIRRYLEHRGYTVLM 64
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
V NFTD+DDKII RANE GEDP L+ ++ F +DM L P + PRV++H+ IID
Sbjct: 65 VMNFTDIDDKIIRRANETGEDPKELAEKFLRYFLEDMKALKVKPADIYPRVTEHIQDIID 124
Query: 198 MITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALW 257
+ ++ + G+AY + VYF V KF +YG+LSG KLE+ G RV KKNP DFALW
Sbjct: 125 FVRKLQEKGYAYEGNDGVYFEVRKFKDYGKLSGIKLEELVKGARVEPGEGKKNPEDFALW 184
Query: 258 KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCA 317
K AK GEP WESPWG GRPGWHIECS MS YLG SFDIHGGG DL+FPHHENEIAQS A
Sbjct: 185 KKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGNDLIFPHHENEIAQSEA 244
Query: 318 ACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINY 377
+ + YW+H GFV + EKMSKSLGNF TIR++++ Y P +R F++ HYRSP++Y
Sbjct: 245 CTGHEWVRYWLHTGFVMVSGEKMSKSLGNFVTIRELLQKYSPEVIRFFVLQKHYRSPLDY 304
Query: 378 SVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDD 437
+ ++ A + +Y TL + A+ D A D + ++ + F +M DD
Sbjct: 305 TEEGIQHAKNNLERLYNTLENIRVAMEKADVAFRWDEEEFELYETVREARKKFYDAMDDD 364
Query: 438 LHTTVVLAALSDPLKTINDLL-HTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSE 496
+T L A+ + +N L K K+ +R ALE + V V GL + E
Sbjct: 365 FNTAEALKAVFEVSNAVNRYLTKVEKPKESVLR----KALE-FFKIVSEVFGLFEDYFKE 419
Query: 497 VLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGT 556
+KA L E V R E RK + + +D IR +L A+GI L D+P GT
Sbjct: 420 ------QKAGDEEALIELLVSVRAE----LRKQRNFTLADKIRDELKALGIQLEDTPQGT 469
Query: 557 TWR 559
W+
Sbjct: 470 IWK 472
>sp|C6BS23|SYC_DESAD Cysteine--tRNA ligase OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=cysS PE=3
SV=1
Length = 485
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/482 (43%), Positives = 298/482 (61%), Gaps = 3/482 (0%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
LYNT++RK+E P KV +Y CG+T YDL HIGHAR V FD+L RYLR GY+V +
Sbjct: 3 LYNTLNRKKEEFVPLNGNKVNLYACGITAYDLCHIGHARSSVVFDILVRYLRFKGYDVTF 62
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
VRNFTD+DDKII RANE G L+ ++ EF+ DM L+ L +EP+ ++H+P +I+
Sbjct: 63 VRNFTDIDDKIINRANETGVTSTELAEKFIGEFYVDMDKLNILRADIEPKCTEHIPEMIE 122
Query: 198 MITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFAL 256
+ +++ AY GDVYF V F +YG+LSGR +ED ++G R+ K++P DFAL
Sbjct: 123 LTQTLIEKDHAYATPSGDVYFKVRSFDDYGKLSGRNIEDLQSGARIQPGEEKQDPLDFAL 182
Query: 257 WKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316
WK+AK GEP WESPWG GRPGWH+ECSAMS Y FDIHGGG DL FPHHENEIAQS
Sbjct: 183 WKAAKPGEPSWESPWGQGRPGWHLECSAMSEKYFELPFDIHGGGQDLSFPHHENEIAQSE 242
Query: 317 AACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPIN 376
AA +W+HNGFV I+SEKMSKSLGNFFTIR +++ + P LR FL+ HYRSP++
Sbjct: 243 AATGKEMARFWVHNGFVQINSEKMSKSLGNFFTIRDILDKFMPETLRYFLLTMHYRSPLD 302
Query: 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSD 436
+S LE A + I +Y L +AL+ + K ++P + + I + +M D
Sbjct: 303 FSFEALEEAEKGIRRVYSALEQTAEALN--KSKWSKAALPEEVLAEIEDAEKGWADAMED 360
Query: 437 DLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSE 496
D++T + + ++ + + +K ++ + + ++ VLG+ + E
Sbjct: 361 DMNTAGAMGHMFTLIRLAGRIGEEKSWRKSEGGRDAWIRILEDMKKWGEVLGIFTRDPKE 420
Query: 497 VLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGT 556
L +L+ L+R + +V + + R ARKNK++ +SD IR +L +G+ + D+P G
Sbjct: 421 FLEELKLCMLERKGIEVAKVEELVAARQEARKNKDFARSDEIRDELIELGVEVKDTPQGA 480
Query: 557 TW 558
W
Sbjct: 481 VW 482
>sp|B8JDH1|SYC_ANAD2 Cysteine--tRNA ligase OS=Anaeromyxobacter dehalogenans (strain
2CP-1 / ATCC BAA-258) GN=cysS PE=3 SV=1
Length = 481
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/483 (49%), Positives = 307/483 (63%), Gaps = 20/483 (4%)
Query: 83 SRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFT 142
++KRELV P GK+ +YVCG T YD SH+GHAR YV +DV+ R+LR G EV +VRNFT
Sbjct: 11 AQKRELV-PLEPGKLRLYVCGPTVYDYSHLGHARCYVVWDVVVRHLRARGLEVRFVRNFT 69
Query: 143 DVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQI 202
DVDDKII RANE GEDPI+L+ R+ + FH+DM L L P VEPRVS H+P I+ +I ++
Sbjct: 70 DVDDKIIQRANERGEDPIALASRFADAFHEDMDALGNLRPDVEPRVSGHIPEIVALIARL 129
Query: 203 LDNGFAYR-VDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAK 261
++ GFAY +GDVY++V KFPEYG+LS R L+D AG RV K++P DFALWK+AK
Sbjct: 130 VERGFAYAPGNGDVYYAVRKFPEYGRLSKRNLDDLIAGARVEPGEAKRDPLDFALWKAAK 189
Query: 262 EGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN 321
GEP WESPWG GRPGWHIECSAM+ +LG D+H GG DLVFPHH NEIAQS AA ++
Sbjct: 190 PGEPAWESPWGKGRPGWHIECSAMTQKHLGAPIDLHAGGKDLVFPHHTNEIAQSVAATSD 249
Query: 322 S-----HISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPIN 376
YW+HNGFV ID EKMSKSLGNFFTIR V+ + ALR FL+GTHYR N
Sbjct: 250 GLHAEDFARYWMHNGFVQIDDEKMSKSLGNFFTIRDVLARFDGEALRFFLLGTHYRRDFN 309
Query: 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSD 436
+S L A R+ +Y+T+ E+ + + F A++ D
Sbjct: 310 FSDQVLAEAERRLSALYETVEKAERLGAGA------------APAAEPAFVERARAALDD 357
Query: 437 DLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSE 496
D +T VL +++ N L RKGKK + LAA + R V VLG++ ++
Sbjct: 358 DFNTPQVLGIVAEAFTEAN-ALADRKGKKSSEEKARLAAFARGARAVGAVLGILDRPPAQ 416
Query: 497 VLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGT 556
L +R++A R + +V + I +R AR K++ +SDAIR L A G+ LMD P GT
Sbjct: 417 ALTAIRDRAAARRGIDGGEVERSIAERAAARAAKDFARSDAIRDALLARGVVLMDGPQGT 476
Query: 557 TWR 559
TW+
Sbjct: 477 TWK 479
>sp|A5D5M0|SYC_PELTS Cysteine--tRNA ligase OS=Pelotomaculum thermopropionicum (strain
DSM 13744 / JCM 10971 / SI) GN=cysS PE=3 SV=1
Length = 484
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/482 (45%), Positives = 296/482 (61%), Gaps = 3/482 (0%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
+YNT++R++E +P+ G+V MYVCG T Y+ H+G+AR V FD + RYL H GYEV +
Sbjct: 3 IYNTLTRRKENFQPREPGRVCMYVCGPTTYNYIHLGNARPLVFFDTVRRYLIHKGYEVLF 62
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
V+NFTDVDDKII RA E G+DP++L+RRY E+ +D L+ P VS+H+P II
Sbjct: 63 VQNFTDVDDKIINRAQEEGDDPLALARRYIGEYFKDADALNVRRADRHPLVSEHIPDIIK 122
Query: 198 MITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALW 257
M+ +++ G AY VDG+VYF V KF YG+LSGR LED +AG RV VD RK++P DFALW
Sbjct: 123 MVDELVKKGAAYVVDGNVYFEVRKFAGYGKLSGRTLEDMQAGARVEVDPRKRDPLDFALW 182
Query: 258 KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCA 317
K+AK GEP W+SPWGPGRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEIAQS A
Sbjct: 183 KAAKPGEPCWDSPWGPGRPGWHIECSAMSLKYLGTNFDIHGGGYDLIFPHHENEIAQSEA 242
Query: 318 ACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINY 377
A + YW+HNGF+T++ EKMSKSLGNFF +R ++ + P +R FL+ THYRSP+++
Sbjct: 243 ATGQPFVRYWMHNGFITVNEEKMSKSLGNFFLVRDILAKFPPELVRFFLLSTHYRSPLDF 302
Query: 378 SVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDD 437
++ +A + I +L +AL + ++ D I F A+M DD
Sbjct: 303 DGEKMAAAGRGLERIKTSLRLLYEALERPVSEGVQAVCSRDPFDEIRA---SFEAAMDDD 359
Query: 438 LHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEV 497
+T + + A+ D + N + + L VLG+ +
Sbjct: 360 FNTALAIGAVFDLAREANTAVQRTGPAVSGQDRQILQYALDLFNEFNEVLGIFKVDGASG 419
Query: 498 LLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTT 557
L + A + L E + +E R ARK K++ +D IR L +GI L D+P G
Sbjct: 420 RLLIDGAAGDDSGLVEGLINLILEVRQEARKRKDWSTADRIRDGLKELGILLEDTPQGVR 479
Query: 558 WR 559
W+
Sbjct: 480 WK 481
>sp|A6WLP8|SYC_SHEB8 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS185) GN=cysS
PE=3 SV=1
Length = 459
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/488 (46%), Positives = 299/488 (61%), Gaps = 36/488 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R+++ KP GK+GMYVCGVT YDL HIGH R +V+FD++ RYLR+ GYEV
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+ RN TDVDDKII RANE E +L+ R E HQD L+ L P EPR + H+ I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHQDFDALNMLRPDFEPRATLHIAEI 121
Query: 196 IDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
IDM+ +L G AY DGDV FSV +P+YG+LSG+ L+ +AG RV VD K+NP DF
Sbjct: 122 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDETKQNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +K GEP WESPWGPGRPGWHIECSAM++ +LG FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A + +++YW+H G V +D EKMSKSLGNFFTIR V+ Y +R FL+ HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS L+ A + +Y + D + L++ A A +F F A+M
Sbjct: 302 LNYSEDNLKQARSALERLYTAIKDVD--LTVAAAPA-------------EEFVAKFKAAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D ++ IN L T + +AL T++ + VLGL+S
Sbjct: 347 DDDFNTPEAYSVLFDMVREINRLKLT--------DMAQASALAVTLKQLADVLGLLSQ-- 396
Query: 495 SEVLLQLREKALKRADLTEDQVLQ---RIEDRTVARKNKEYEKSDAIRKDLAAVGIALMD 551
+A + ++D+V + I +R AR K++ +D R L +G+ L D
Sbjct: 397 -------EPEAFFQGGGSDDEVAEIEALIVERNRARTEKDWAAADVARNRLNELGVELED 449
Query: 552 SPVGTTWR 559
P GTTWR
Sbjct: 450 GPSGTTWR 457
>sp|A9KWH4|SYC_SHEB9 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS195) GN=cysS
PE=3 SV=1
Length = 459
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/488 (46%), Positives = 299/488 (61%), Gaps = 36/488 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YN+++R+++ KP GK+GMYVCGVT YDL HIGH R +V+FD++ RYLR+ GYEV
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+ RN TDVDDKII RANE E +L+ R E HQD L+ L P EPR + H+ I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHQDFDALNMLRPDFEPRATLHIAEI 121
Query: 196 IDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
IDM+ +L G AY DGDV FSV +P+YG+LSG+ L+ +AG RV VD K+NP DF
Sbjct: 122 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDETKQNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +K GEP WESPWGPGRPGWHIECSAM++ +LG FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A + +++YW+H G V +D EKMSKSLGNFFTIR V+ Y +R FL+ HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS L+ A + +Y + D + L++ A A +F F A+M
Sbjct: 302 LNYSEDNLKQARSALERLYTAIKDVD--LTVAAAPA-------------EEFIAKFKAAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D ++ IN L T + +AL T++ + VLGL+S
Sbjct: 347 DDDFNTPEAYSVLFDMVREINRLKLT--------DMAQASALAVTLKQLADVLGLLSQ-- 396
Query: 495 SEVLLQLREKALKRADLTEDQVLQ---RIEDRTVARKNKEYEKSDAIRKDLAAVGIALMD 551
+A + ++D+V + I +R AR K++ +D R L +G+ L D
Sbjct: 397 -------EPEAFFQGGGSDDEVAEIEALIVERNRARTEKDWAAADVARNRLNELGVELED 449
Query: 552 SPVGTTWR 559
P GTTWR
Sbjct: 450 GPSGTTWR 457
>sp|B0BPJ8|SYC_ACTPJ Cysteine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 3
(strain JL03) GN=cysS PE=3 SV=1
Length = 459
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/492 (46%), Positives = 294/492 (59%), Gaps = 40/492 (8%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+ R++E KP +VGMYVCGVT YDL H GH R +V+FDV+ RYLR+LGY +
Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYNL 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TDVDDKII RA E E L R E H+D DL+ L P VEPR + H+P I
Sbjct: 62 RYVRNITDVDDKIIKRALENNETCDQLVDRMIAEMHKDFDDLNILRPDVEPRATKHIPEI 121
Query: 196 IDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
+ M+ +++ NG AY DGDV F V+ F +YG LS + LE +AG RV + S KKNP DF
Sbjct: 122 VAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKSVKKNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +KEGEP W+SPWG GRPGWHIECSAM++ LG FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A +++YW+H G +TID EKMSKSLGNFFTIR ++E Y LR F + HYRS
Sbjct: 242 SCCAHGGDYVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLEKYESETLRYFFLTAHYRSL 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS+ L+ A + +Y +L C+ ++ V ++ F A+M
Sbjct: 302 LNYSLNNLDLARSALERLYTSLRGCDLSVE---------------VAGGEQYVEAFKAAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ--AMRLESLAALEKTIRNVLTVLGLMST 492
DD +T LA L + + +N L K A+RL+ LA VLGL+
Sbjct: 347 DDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAG----------VLGLLYQ 396
Query: 493 GYSEVLLQLREKALKRADLTEDQVLQ---RIEDRTVARKNKEYEKSDAIRKDLAAVGIAL 549
E LQ D D+V + I+ R A+ K + +D +R L A+ I L
Sbjct: 397 D-PEAFLQ--------GDADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVL 447
Query: 550 MDSPVGTTWRPA 561
D+P GTTWR A
Sbjct: 448 EDTPNGTTWRKA 459
>sp|B4UGC3|SYC_ANASK Cysteine--tRNA ligase OS=Anaeromyxobacter sp. (strain K) GN=cysS
PE=3 SV=1
Length = 481
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/483 (49%), Positives = 306/483 (63%), Gaps = 20/483 (4%)
Query: 83 SRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFT 142
++KRELV P GK+ +YVCG T YD SH+GHAR YV +DV+ R+LR G EV +VRNFT
Sbjct: 11 AQKRELV-PLEPGKLRLYVCGPTVYDYSHLGHARCYVVWDVVVRHLRARGLEVRFVRNFT 69
Query: 143 DVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQI 202
DVDDKII RANE GEDPI+L+ R+ + FH+DM L L P VEPRVS H+P I+ +I ++
Sbjct: 70 DVDDKIIQRANERGEDPIALASRFADAFHEDMDALGNLRPDVEPRVSGHIPEIVALIARL 129
Query: 203 LDNGFAYR-VDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAK 261
++ GFAY +GDVY++V KFPEYG+LS R L+D AG RV K++P DFALWK+AK
Sbjct: 130 VERGFAYAPGNGDVYYAVRKFPEYGRLSKRNLDDLIAGARVEPGEAKRDPLDFALWKAAK 189
Query: 262 EGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN 321
GEP WESPWG GRPGWHIECSAM+ +LG D+H GG DLVFPHH NEIAQS AA ++
Sbjct: 190 PGEPAWESPWGKGRPGWHIECSAMTQKHLGAPIDLHAGGKDLVFPHHTNEIAQSVAATSD 249
Query: 322 S-----HISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPIN 376
YW+HNGFV ID EKMSKSLGNFFTIR V+ + ALR FL+GTHYR N
Sbjct: 250 GLHAEDFARYWMHNGFVQIDDEKMSKSLGNFFTIRDVLARFDGEALRFFLLGTHYRRDFN 309
Query: 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSD 436
+S L A R+ +Y+T+ E+ + + F A++ D
Sbjct: 310 FSDQVLAEAERRLSALYETVEKAERLGAGA------------APAAEPAFVERARAALDD 357
Query: 437 DLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSE 496
D +T VL +++ N L RKGKK LAA + R V VLG++ ++
Sbjct: 358 DFNTPQVLGIVAEAFTEAN-ALADRKGKKSPEEKARLAAFARGARAVGAVLGILDRPPAQ 416
Query: 497 VLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGT 556
L +R++A R + +V + I +R AR K++ +SDAIR L A G+ LMD P GT
Sbjct: 417 ALSAIRDRAAARRGIDGGEVERSIAERAAARAAKDFARSDAIRDALLARGVVLMDGPQGT 476
Query: 557 TWR 559
TW+
Sbjct: 477 TWK 479
>sp|Q1QC19|SYC_PSYCK Cysteine--tRNA ligase OS=Psychrobacter cryohalolentis (strain K5)
GN=cysS PE=3 SV=1
Length = 488
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/496 (43%), Positives = 304/496 (61%), Gaps = 19/496 (3%)
Query: 70 ASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLR 129
A A +QL +Y++++ +++ KP GKVGMYVCG+T YD HIGHARV V FD+ R+L
Sbjct: 8 ADAMSQLVIYDSLTGRKQAFKPLATGKVGMYVCGMTVYDYCHIGHARVMVGFDMAVRWLA 67
Query: 130 HLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVS 189
LGY+V YVRN TD+DDKII RA E GE+ +L++R+ H+D L CL P EPR +
Sbjct: 68 QLGYDVNYVRNITDIDDKIITRAAENGEEIGTLTQRFITAMHEDATALGCLSPDAEPRAT 127
Query: 190 DHMPHIIDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRK 248
DH+ + MI ++ N +AY D GDVY++VD F +YG+LS R L+D +AG RV V++ K
Sbjct: 128 DHIDEMQQMIETLVSNDYAYAGDNGDVYYAVDSFADYGKLSKRNLDDMQAGSRVEVENDK 187
Query: 249 KNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHH 308
+NP DF LWK+AK EP W S WG GRPGWHIECSAMS LG++FDIHGGG DL FPHH
Sbjct: 188 RNPFDFVLWKAAKPDEPQWASAWGQGRPGWHIECSAMSTKCLGNTFDIHGGGHDLQFPHH 247
Query: 309 ENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG 368
ENEIAQS AA + W+H GF+ +D EKMSKSLGNFFTIR VM Y P +R FL+
Sbjct: 248 ENEIAQSEAATGCEYARNWMHVGFINVDGEKMSKSLGNFFTIRDVMAKYLPETVRFFLLS 307
Query: 369 THYRSPINYSVVQLESASERIFYIYQTLHDCEKA---LSLLDAAALKDSIPPDTVTSINK 425
+HYRS +N+S L+ + + +YQ L E+ + ++D A + ++ +
Sbjct: 308 SHYRSQVNFSDSALDESHNSLSRLYQALKVAEQQKGKVLIIDEALINNAYA-------SA 360
Query: 426 FHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLT 485
DF+ +M+DD +++ ++ L + IN +A +E+ L + ++ +
Sbjct: 361 VGQDFIKAMNDDFNSSTAISVLFGLARDINK-------ASKAQDVETAWQLAQHLKALAQ 413
Query: 486 VLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAV 545
L ++ + LQ + LT++ + I +R A+ NK + ++D IR L
Sbjct: 414 TLNILQQPVQQ-FLQAVIGEVAEDSLTDEAIDGLIIERADAKTNKNFARADEIRVQLKEA 472
Query: 546 GIALMDSPVGTTWRPA 561
GI L DS GTTWR A
Sbjct: 473 GIELEDSRAGTTWRRA 488
>sp|A3N0S3|SYC_ACTP2 Cysteine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype
5b (strain L20) GN=cysS PE=3 SV=1
Length = 459
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/492 (46%), Positives = 294/492 (59%), Gaps = 40/492 (8%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+ R++E KP +VGMYVCGVT YDL H GH R +V+FDV+ RYLR+LGY +
Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYNL 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TDVDDKII RA E E L R E H+D DL+ L P VEPR + H+P I
Sbjct: 62 RYVRNITDVDDKIIKRALENNETCDQLVDRMIAEMHKDFDDLNILRPDVEPRATKHIPEI 121
Query: 196 IDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
+ M+ +++ NG AY DGDV F V+ F +YG LS + LE +AG RV + S KKNP DF
Sbjct: 122 VAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKSVKKNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +KEGEP W+SPWG GRPGWHIECSAM++ LG FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A +++YW+H G +TID EKMSKSLGNFFTIR ++E Y LR F + HYRS
Sbjct: 242 SCCAHGGDYVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLEKYESETLRYFFLTAHYRSL 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS+ L+ A + +Y +L C+ ++ V ++ F A+M
Sbjct: 302 LNYSLDNLDLARSALERLYTSLRGCDLSVE---------------VAGGEQYVEAFKAAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ--AMRLESLAALEKTIRNVLTVLGLMST 492
DD +T LA L + + +N L K A+RL+ LA VLGL+
Sbjct: 347 DDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAVRLKELAG----------VLGLLYQ 396
Query: 493 GYSEVLLQLREKALKRADLTEDQVLQ---RIEDRTVARKNKEYEKSDAIRKDLAAVGIAL 549
E LQ D D+V + I+ R A+ K + +D +R L A+ I L
Sbjct: 397 D-PEAFLQ--------GDADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVL 447
Query: 550 MDSPVGTTWRPA 561
D+P GTTWR A
Sbjct: 448 EDTPNGTTWRKA 459
>sp|Q5JD45|SYC_PYRKO Cysteine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=cysS PE=3 SV=1
Length = 476
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/482 (44%), Positives = 290/482 (60%), Gaps = 14/482 (2%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
+YNT++R++E KP EG+V MYVCG T YD +HIGHAR Y+ FDV+ RYL H GY V
Sbjct: 5 IYNTLTRQKEEFKPLREGEVRMYVCGPTVYDYTHIGHARTYIAFDVIRRYLEHKGYTVLM 64
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
V NFTD+DDKII RANE GEDP L+ ++ + F +DM L P + PRV++H+ IID
Sbjct: 65 VMNFTDIDDKIIKRANETGEDPKELAEKFLKYFLEDMKALKVKPADIYPRVTEHIQDIID 124
Query: 198 MITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALW 257
I ++ + G+AY VYF V KF +YG+LS KLED G RV KKNP DFALW
Sbjct: 125 FIRKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKVKLEDLVKGARVEPGEGKKNPEDFALW 184
Query: 258 KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCA 317
K AK GEP WESPWG GRPGWHIECS MS YLG SFDIHGGG DL+FPHHENEIAQ+ A
Sbjct: 185 KKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGSDLIFPHHENEIAQTEA 244
Query: 318 ACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINY 377
+ + YW+H GF+ ++ EKMSKSLGNF TIR+ +E Y P +RLF++ HYRSP++Y
Sbjct: 245 CTGHEWVRYWMHTGFLMVNGEKMSKSLGNFVTIREALERYDPEVIRLFVLQRHYRSPLDY 304
Query: 378 SVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDD 437
+ LE A + +Y TL + A+ + + + +I F +M DD
Sbjct: 305 TEEGLEHAKNNLERLYNTLENIRVAMERAEISFKWGEEEFEAYEAIRDGRKKFYDAMDDD 364
Query: 438 LHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEV 497
+T L A+ + IN L + K+++ L + + V V G+ + E
Sbjct: 365 FNTAEALKAVFEVSNAINRYLTQVEKPKESI----LRKAWEFFKMVSEVFGIFEDYFRE- 419
Query: 498 LLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTT 557
++A E + I+ R RK ++++ +D IR +L +GI L D+P GT
Sbjct: 420 ---------QKAGEEEALIKLLIDVRAQLRKERKFDLADKIRDELRNLGIQLEDTPQGTV 470
Query: 558 WR 559
W+
Sbjct: 471 WK 472
>sp|Q1H417|SYC_METFK Cysteine--tRNA ligase OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=cysS PE=3 SV=1
Length = 455
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/486 (47%), Positives = 299/486 (61%), Gaps = 36/486 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT++R ++ P + GKV MYVCG+T YD H+GHARV V FD++ R+LR GYEV
Sbjct: 2 LKIYNTLARAKQTFSPIIPGKVSMYVCGMTVYDYCHLGHARVMVVFDMVNRWLRSSGYEV 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKIIARANE GE +L+ R+ ++D L P +EPR +D++ +
Sbjct: 62 TYVRNITDIDDKIIARANENGETINALTDRFIAAMNEDAARLGVWRPDLEPRATDYIHEM 121
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I MI +++ AY D GDVY++V F YG+LSG+ LED RAGERV VD+ K++P DF
Sbjct: 122 IAMIVALIEKHHAYAADNGDVYYAVSSFASYGKLSGKSLEDLRAGERVEVDAHKRDPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK+AK GEP W+SPWGPGRPGWHIECSAM A +LG FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGEPSWDSPWGPGRPGWHIECSAMGARHLGPHFDIHGGGQDLQFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S A + ++YW+HNGF+ +D EKMSKSLGNFFTIR+V+E Y +R F++ HYRSP
Sbjct: 242 SEGAHGCTFVNYWMHNGFIRVDDEKMSKSLGNFFTIREVLEKYDAEVVRFFILRAHYRSP 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS L+ A + + +Y TL E L LD D P+ F ++
Sbjct: 302 LNYSSHHLDDAKQALTRLYNTLRGRE--LPQLDI----DWRQPEA--------ERFKQAL 347
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKK-QAMRLESLAALEKTIRNVLTVLGLMSTG 493
DD +T A L + N R G QA L++LA LGL+
Sbjct: 348 DDDFNTPEAFAVLFELASEAN-----RTGSAVQAALLKALAGQ----------LGLLQRD 392
Query: 494 YSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSP 553
E L K A L+ D++ + I +R ARK K + ++D IR L A GI L D+P
Sbjct: 393 PDEFL-----KGEAVAGLSPDEIERLIAERLAARKCKNFAEADRIRDALTAQGIILEDTP 447
Query: 554 VGTTWR 559
GT+WR
Sbjct: 448 QGTSWR 453
>sp|B3GXR0|SYC_ACTP7 Cysteine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 7
(strain AP76) GN=cysS PE=3 SV=1
Length = 459
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/492 (46%), Positives = 293/492 (59%), Gaps = 40/492 (8%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT+ R++E KP +VGMYVCGVT YDL H GH R +V+FDV+ RYLR+LGY +
Sbjct: 2 LKIYNTLKREKEEFKPINSNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYLRYLGYNL 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TDVDDKII RA E E L R E H+D DL+ L P VEPR + H+P I
Sbjct: 62 RYVRNITDVDDKIIKRALENNEMCDQLVDRMIAEMHKDFDDLNILRPDVEPRATKHIPEI 121
Query: 196 IDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
+ M+ +++ NG AY DGDV F V+ F +YG LS + LE +AG RV + S KKNP DF
Sbjct: 122 VAMVEKLIANGHAYVAADGDVMFDVESFKKYGALSRQNLEQLQAGARVEIKSVKKNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +KEGEP W+SPWG GRPGWHIECSAM++ LG FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNSKELGEHFDIHGGGSDLMFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
SC A +++YW+H G +TID EKMSKSLGNFFTIR ++E Y LR F + HYRS
Sbjct: 242 SCCAHGGDYVNYWLHTGMLTIDDEKMSKSLGNFFTIRTMLEKYESETLRYFFLTAHYRSL 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS+ L+ A + +Y +L C+ ++ V ++ F A+M
Sbjct: 302 LNYSLNNLDLARSALERLYTSLRGCDLSVE---------------VAGGEQYVEAFKAAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ--AMRLESLAALEKTIRNVLTVLGLMST 492
DD +T LA L + + +N L K A RL+ LA VLGL+
Sbjct: 347 DDDFNTPGALAVLFEIAREVNKLKTEDMAKANGLAARLKELAG----------VLGLLYQ 396
Query: 493 GYSEVLLQLREKALKRADLTEDQVLQ---RIEDRTVARKNKEYEKSDAIRKDLAAVGIAL 549
E LQ D D+V + I+ R A+ K + +D +R L A+ I L
Sbjct: 397 D-PEAFLQ--------GDADNDEVAEIEALIKQRNEAKAAKNWAVADEVRDKLKAMNIVL 447
Query: 550 MDSPVGTTWRPA 561
D+P GTTWR A
Sbjct: 448 EDTPNGTTWRKA 459
>sp|Q4FRZ9|SYC_PSYA2 Cysteine--tRNA ligase OS=Psychrobacter arcticus (strain DSM 17307 /
273-4) GN=cysS PE=3 SV=1
Length = 488
Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/495 (44%), Positives = 308/495 (62%), Gaps = 17/495 (3%)
Query: 70 ASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLR 129
A A +QL +Y++++ +++ KP VEGKVGMYVCG+T YD HIGHARV V FD+ R+L
Sbjct: 8 ADAMSQLVIYDSLTGRKQSFKPLVEGKVGMYVCGMTVYDYCHIGHARVMVGFDMAVRWLA 67
Query: 130 HLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVS 189
LGY+V YVRN TD+DDKIIARA E GE+ +L++R+ H+D L C P+ EPR +
Sbjct: 68 QLGYDVNYVRNITDIDDKIIARAAENGEEIGALTQRFITAMHEDATALGCQSPNAEPRAT 127
Query: 190 DHMPHIIDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRK 248
D++ + MI ++ N +AY D GDVY++VD F +YG+LS R L+D +AG RV V++ K
Sbjct: 128 DYIDEMQQMIETLVSNDYAYAGDNGDVYYAVDSFADYGKLSKRNLDDMQAGSRVEVENDK 187
Query: 249 KNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHH 308
+NP DF LWK+AK EP W S WG GRPGWHIECSAMS LG++FDIHGGG DL FPHH
Sbjct: 188 RNPFDFVLWKAAKPDEPQWVSSWGQGRPGWHIECSAMSTKCLGNTFDIHGGGHDLQFPHH 247
Query: 309 ENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG 368
ENEIAQS AA + W+H GF+ +D EKMSKSLGNFFTIR VM Y P +R FL+
Sbjct: 248 ENEIAQSEAATGCEYARNWMHVGFINVDGEKMSKSLGNFFTIRDVMAKYLPETVRFFLLS 307
Query: 369 THYRSPINYSVVQLESASERIFYIYQTLHDCE--KALSLLDAAALKDSIPPDTVTSINKF 426
+HYRS +N+S L+ A + +YQ L E K +L+ + D++ + S
Sbjct: 308 SHYRSQVNFSDSALDEAHNSLSRLYQALKVVEQQKGQTLI----VDDALINNAYASAPG- 362
Query: 427 HNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTV 486
DF+ +M+DD +++ ++ L + IN + +ES L + ++ +
Sbjct: 363 -QDFIKAMNDDFNSSTAISVLFGLARDINK-------ASKVEDIESAWQLAQQLKALAQT 414
Query: 487 LGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546
L ++ + L + +A + LT++ + I +R A+ NK + ++D IR L G
Sbjct: 415 LNILQQPVQQFLQAVIGEAAEDG-LTDEAIDSLIIERADAKTNKNFARADEIRIQLKDAG 473
Query: 547 IALMDSPVGTTWRPA 561
I L DS GTTWR A
Sbjct: 474 IELEDSRAGTTWRRA 488
>sp|Q31H54|SYC_THICR Cysteine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=cysS PE=3 SV=1
Length = 456
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/485 (46%), Positives = 306/485 (63%), Gaps = 34/485 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L +YNT +R++E P KVG+YVCGVT YD H+GHARV V FD + R+LR LGY+V
Sbjct: 3 LKIYNTETRQKETFTPIQPNKVGLYVCGVTVYDYCHVGHARVMVVFDTVVRHLRSLGYDV 62
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKII RA E E SL+ R+ + H+D L+ L P +EP+ +++M I
Sbjct: 63 TYVRNITDIDDKIIQRALENKESIQSLTSRFIDAMHEDEKALNVLRPDMEPKATEYMDEI 122
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
MI+ +++ FAY + GDVYF V +YG+LSG+ +E+ +G RV ++S KK+P DF
Sbjct: 123 ETMISTLIEKDFAYPAENGDVYFHVKADDDYGRLSGKNIEELDSGSRVEINSVKKDPLDF 182
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK++KE EP W+SPWG GRPGWHIECSAMS LG+ FDIHGGG+DL FPHHENEIAQ
Sbjct: 183 VLWKASKENEPAWQSPWGDGRPGWHIECSAMSTKCLGNHFDIHGGGLDLSFPHHENEIAQ 242
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S A +++ W+H GFV ID EKMSKSLGNFFTIR+V++ YHP +R FL+ +HYRSP
Sbjct: 243 SECATGEHYVNSWMHCGFVRIDDEKMSKSLGNFFTIREVLKQYHPEVIRYFLLASHYRSP 302
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS L+ A + +Y AL L+ A D P + +K +F+A+M
Sbjct: 303 VNYSEENLDVAKASVGRLYS-------ALELVPA----DQAEP----AESKLEAEFMAAM 347
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
+DD +T +A L + K +N KQ + LAAL K + N + +L + +
Sbjct: 348 NDDFNTPQAMAVLFELAKEVN---------KQ--KSPGLAALLKKLANQIGLLEQTAESF 396
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
+ +DLT++ + I +R ARK K++ +SD IR +L A GI L+DS
Sbjct: 397 F-------KSQPSDSDLTDEMIEALIVERAEARKAKDFSRSDEIRDELLAQGIELLDSAE 449
Query: 555 GTTWR 559
GT+WR
Sbjct: 450 GTSWR 454
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,498,708
Number of Sequences: 539616
Number of extensions: 9296408
Number of successful extensions: 30376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 545
Number of HSP's that attempted gapping in prelim test: 26066
Number of HSP's gapped (non-prelim): 2318
length of query: 574
length of database: 191,569,459
effective HSP length: 123
effective length of query: 451
effective length of database: 125,196,691
effective search space: 56463707641
effective search space used: 56463707641
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)