Query 008191
Match_columns 574
No_of_seqs 374 out of 2505
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 20:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02946 cysteine-tRNA ligase 100.0 2E-133 4E-138 1084.9 48.5 555 5-573 1-557 (557)
2 COG0215 CysS Cysteinyl-tRNA sy 100.0 5E-130 1E-134 1021.2 42.2 456 75-561 1-464 (464)
3 PRK14535 cysS cysteinyl-tRNA s 100.0 3E-120 6E-125 984.7 47.1 459 72-561 224-699 (699)
4 PRK14536 cysS cysteinyl-tRNA s 100.0 8E-118 2E-122 954.7 47.7 467 75-561 2-490 (490)
5 PRK14534 cysS cysteinyl-tRNA s 100.0 1E-115 2E-120 933.7 46.1 464 75-561 2-481 (481)
6 PRK00260 cysS cysteinyl-tRNA s 100.0 6E-114 1E-118 934.3 47.9 463 74-561 1-463 (463)
7 PTZ00399 cysteinyl-tRNA-synthe 100.0 2E-113 4E-118 955.2 50.0 489 73-569 37-556 (651)
8 KOG2007 Cysteinyl-tRNA synthet 100.0 2E-113 4E-118 881.5 41.1 506 63-572 21-584 (586)
9 TIGR00435 cysS cysteinyl-tRNA 100.0 6E-113 1E-117 924.3 45.5 463 76-560 1-465 (465)
10 TIGR03447 mycothiol_MshC cyste 100.0 6E-104 1E-108 828.5 33.8 373 63-456 5-387 (411)
11 PRK12418 cysteinyl-tRNA synthe 100.0 2.4E-98 5E-103 783.2 32.0 354 90-462 2-366 (384)
12 PF01406 tRNA-synt_1e: tRNA sy 100.0 4.4E-99 1E-103 754.4 21.0 299 89-387 1-300 (300)
13 COG0143 MetG Methionyl-tRNA sy 100.0 1E-61 2.2E-66 525.9 39.3 401 98-502 6-511 (558)
14 cd00672 CysRS_core catalytic c 100.0 7.6E-64 1.6E-68 488.2 20.3 213 77-378 1-213 (213)
15 PRK11893 methionyl-tRNA synthe 100.0 1.8E-61 3.9E-66 534.3 35.8 394 96-502 2-475 (511)
16 PLN02224 methionine-tRNA ligas 100.0 9.6E-59 2.1E-63 513.3 38.9 399 99-502 71-545 (616)
17 PRK12267 methionyl-tRNA synthe 100.0 2.1E-57 4.5E-62 513.1 37.9 399 98-502 5-477 (648)
18 PRK00133 metG methionyl-tRNA s 100.0 6E-57 1.3E-61 510.2 39.5 395 103-503 10-503 (673)
19 TIGR00398 metG methionyl-tRNA 100.0 2.4E-56 5.2E-61 494.9 39.1 400 99-502 3-502 (530)
20 PLN02610 probable methionyl-tR 100.0 5.5E-56 1.2E-60 504.6 38.8 404 96-502 16-531 (801)
21 KOG0436 Methionyl-tRNA synthet 100.0 5.3E-57 1.1E-61 454.7 26.6 400 98-501 40-525 (578)
22 PRK12268 methionyl-tRNA synthe 100.0 5.8E-55 1.3E-59 486.5 37.1 401 99-502 5-509 (556)
23 cd00668 Ile_Leu_Val_MetRS_core 100.0 6.6E-53 1.4E-57 437.4 15.9 269 97-377 2-312 (312)
24 PF09334 tRNA-synt_1g: tRNA sy 100.0 2.4E-50 5.1E-55 427.9 19.5 291 100-395 2-389 (391)
25 PRK13208 valS valyl-tRNA synth 100.0 4.4E-47 9.6E-52 438.0 32.0 403 96-502 39-705 (800)
26 cd00814 MetRS_core catalytic c 100.0 5.1E-48 1.1E-52 401.7 19.8 274 99-377 4-319 (319)
27 TIGR00422 valS valyl-tRNA synt 100.0 6.2E-46 1.3E-50 431.5 33.6 404 96-502 34-699 (861)
28 COG0525 ValS Valyl-tRNA synthe 100.0 2.1E-45 4.5E-50 409.0 32.2 416 86-503 21-699 (877)
29 PRK05729 valS valyl-tRNA synth 100.0 1.5E-44 3.4E-49 419.7 33.2 404 97-503 38-693 (874)
30 PLN02943 aminoacyl-tRNA ligase 100.0 4.8E-44 1E-48 416.3 30.5 404 96-502 89-770 (958)
31 TIGR00395 leuS_arch leucyl-tRN 100.0 1.1E-43 2.4E-48 413.5 31.2 202 292-502 572-777 (938)
32 PRK01611 argS arginyl-tRNA syn 100.0 4.9E-44 1.1E-48 393.0 26.3 358 93-491 109-503 (507)
33 PRK14900 valS valyl-tRNA synth 100.0 1.3E-42 2.7E-47 407.2 34.0 403 96-502 49-714 (1052)
34 cd00812 LeuRS_core catalytic c 100.0 9.4E-45 2E-49 376.1 12.9 270 98-379 3-314 (314)
35 cd00817 ValRS_core catalytic c 100.0 1.3E-43 2.8E-48 376.7 17.6 274 97-377 3-382 (382)
36 PRK06039 ileS isoleucyl-tRNA s 100.0 1.2E-41 2.5E-46 398.3 31.5 405 96-502 42-771 (975)
37 PRK05743 ileS isoleucyl-tRNA s 100.0 1E-41 2.3E-46 396.0 29.1 403 97-502 51-769 (912)
38 PRK00390 leuS leucyl-tRNA synt 100.0 3.3E-41 7.2E-46 387.3 31.4 385 98-502 33-722 (805)
39 PLN02882 aminoacyl-tRNA ligase 100.0 1.3E-40 2.8E-45 391.6 35.8 211 292-503 566-801 (1159)
40 TIGR00396 leuS_bact leucyl-tRN 100.0 6E-41 1.3E-45 385.9 29.0 392 95-502 27-758 (842)
41 cd00818 IleRS_core catalytic c 100.0 1.1E-42 2.5E-47 363.7 13.0 275 97-377 3-338 (338)
42 PLN02843 isoleucyl-tRNA synthe 100.0 2.9E-40 6.3E-45 384.8 32.0 209 292-502 563-796 (974)
43 TIGR00392 ileS isoleucyl-tRNA 100.0 1.1E-39 2.5E-44 379.5 32.8 207 293-502 564-790 (861)
44 PLN02381 valyl-tRNA synthetase 100.0 1.8E-39 3.9E-44 380.0 34.1 404 96-502 129-871 (1066)
45 PRK13804 ileS isoleucyl-tRNA s 100.0 1.4E-39 3.1E-44 379.0 31.9 207 292-502 582-807 (961)
46 PTZ00419 valyl-tRNA synthetase 100.0 1.9E-39 4.2E-44 381.2 32.3 405 95-502 60-804 (995)
47 PRK12300 leuS leucyl-tRNA synt 100.0 1.1E-38 2.4E-43 370.2 29.9 199 292-502 529-731 (897)
48 PLN02563 aminoacyl-tRNA ligase 100.0 7.6E-39 1.6E-43 369.4 26.9 390 95-502 108-874 (963)
49 PTZ00427 isoleucine-tRNA ligas 100.0 4.6E-37 9.9E-42 360.6 31.9 209 293-503 673-906 (1205)
50 COG0495 LeuS Leucyl-tRNA synth 100.0 5.1E-36 1.1E-40 335.3 29.9 404 84-502 19-732 (814)
51 TIGR00456 argS arginyl-tRNA sy 100.0 1.8E-35 3.9E-40 328.8 28.4 367 81-491 96-562 (566)
52 COG0060 IleS Isoleucyl-tRNA sy 100.0 1.3E-35 2.9E-40 334.5 25.7 408 95-504 48-781 (933)
53 KOG1247 Methionyl-tRNA synthet 100.0 3.5E-35 7.5E-40 296.5 18.7 413 87-502 5-519 (567)
54 PLN02959 aminoacyl-tRNA ligase 100.0 6.6E-33 1.4E-37 325.8 32.2 201 292-501 670-877 (1084)
55 PRK12451 arginyl-tRNA syntheta 100.0 6.6E-33 1.4E-37 307.3 30.4 356 94-491 112-558 (562)
56 COG0018 ArgS Arginyl-tRNA synt 100.0 6.4E-33 1.4E-37 303.9 29.7 360 93-491 115-573 (577)
57 cd00674 LysRS_core_class_I cat 100.0 3.5E-33 7.6E-38 290.0 20.8 275 97-394 20-330 (353)
58 KOG0432 Valyl-tRNA synthetase 100.0 1.8E-30 4E-35 283.0 30.5 407 91-502 71-807 (995)
59 PLN02286 arginine-tRNA ligase 100.0 1.1E-30 2.5E-35 289.7 29.5 353 94-491 116-572 (576)
60 PRK00750 lysK lysyl-tRNA synth 100.0 3.3E-31 7.1E-36 289.8 18.3 279 97-397 24-337 (510)
61 cd00671 ArgRS_core catalytic c 100.0 1.2E-29 2.6E-34 248.8 19.6 207 96-345 1-212 (212)
62 PF00133 tRNA-synt_1: tRNA syn 100.0 6.5E-30 1.4E-34 286.5 17.6 126 96-221 24-169 (601)
63 TIGR00467 lysS_arch lysyl-tRNA 100.0 1.5E-29 3.3E-34 274.8 18.8 272 97-398 19-332 (515)
64 KOG0435 Leucyl-tRNA synthetase 100.0 6.2E-29 1.3E-33 264.0 20.6 391 102-502 64-780 (876)
65 KOG0433 Isoleucyl-tRNA synthet 99.9 6.3E-26 1.4E-30 243.2 28.2 208 293-502 566-796 (937)
66 cd00802 class_I_aaRS_core cata 99.9 6.1E-26 1.3E-30 209.0 13.2 142 99-344 1-143 (143)
67 KOG0434 Isoleucyl-tRNA synthet 99.9 1.2E-23 2.6E-28 223.6 24.8 247 293-541 554-836 (1070)
68 COG1384 LysS Lysyl-tRNA synthe 99.9 1.3E-24 2.9E-29 228.6 16.0 273 96-396 19-335 (521)
69 PF01921 tRNA-synt_1f: tRNA sy 99.9 8.6E-26 1.9E-30 232.1 6.3 275 95-394 22-338 (360)
70 PRK04156 gltX glutamyl-tRNA sy 99.9 4.2E-24 9.2E-29 232.8 16.3 264 94-388 99-404 (567)
71 PF00750 tRNA-synt_1d: tRNA sy 99.9 1E-22 2.2E-27 214.4 11.6 250 92-379 17-354 (354)
72 cd07963 Anticodon_Ia_Cys Antic 99.9 2.4E-20 5.3E-25 174.2 18.2 155 380-560 2-156 (156)
73 cd09287 GluRS_non_core catalyt 99.8 2.5E-18 5.3E-23 169.3 15.0 211 100-387 4-231 (240)
74 KOG4426 Arginyl-tRNA synthetas 99.7 1.5E-14 3.3E-19 148.0 25.8 356 93-491 186-652 (656)
75 KOG1195 Arginyl-tRNA synthetas 99.6 1.2E-14 2.7E-19 151.9 20.6 356 93-491 108-563 (567)
76 TIGR00464 gltX_bact glutamyl-t 99.5 1.4E-11 2.9E-16 134.3 27.6 241 103-387 7-313 (470)
77 TIGR00463 gltX_arch glutamyl-t 99.5 9.8E-13 2.1E-17 144.0 16.2 255 103-388 99-395 (560)
78 PLN03233 putative glutamate-tR 99.4 7.5E-12 1.6E-16 135.7 16.6 255 103-388 17-312 (523)
79 PRK01406 gltX glutamyl-tRNA sy 99.4 3.2E-10 6.8E-15 123.7 28.6 241 103-387 10-322 (476)
80 KOG0437 Leucyl-tRNA synthetase 99.4 2.6E-12 5.7E-17 139.0 12.0 202 292-502 662-869 (1080)
81 PRK05347 glutaminyl-tRNA synth 99.4 1.2E-11 2.6E-16 134.6 16.7 252 102-388 34-336 (554)
82 cd00418 GlxRS_core catalytic c 99.4 1.6E-11 3.4E-16 120.8 15.9 175 103-370 7-184 (230)
83 PRK12558 glutamyl-tRNA synthet 99.3 1E-11 2.2E-16 133.2 14.6 239 103-385 8-288 (445)
84 PLN02907 glutamate-tRNA ligase 99.3 3.2E-11 7E-16 136.8 17.4 255 103-388 219-514 (722)
85 cd00807 GlnRS_core catalytic c 99.3 5.1E-11 1.1E-15 117.3 16.5 207 103-388 7-230 (238)
86 PTZ00402 glutamyl-tRNA synthet 99.3 3.9E-11 8.4E-16 131.5 17.2 255 103-388 58-354 (601)
87 cd00808 GluRS_core catalytic c 99.3 6.1E-11 1.3E-15 117.5 16.3 188 103-382 7-208 (239)
88 PRK12410 glutamylglutaminyl-tR 99.3 7.2E-11 1.6E-15 126.1 17.2 237 103-384 5-281 (433)
89 PRK14703 glutaminyl-tRNA synth 99.3 7.7E-11 1.7E-15 133.5 17.9 254 103-388 37-339 (771)
90 PTZ00437 glutaminyl-tRNA synth 99.3 1.1E-10 2.3E-15 127.1 16.0 255 94-388 49-352 (574)
91 PRK14895 gltX glutamyl-tRNA sy 99.2 2.2E-10 4.8E-15 124.3 18.3 246 103-385 10-288 (513)
92 TIGR00440 glnS glutaminyl-tRNA 99.2 2.2E-10 4.9E-15 124.5 16.0 257 103-388 6-307 (522)
93 PLN02627 glutamyl-tRNA synthet 99.2 5E-10 1.1E-14 121.8 16.6 239 103-385 51-342 (535)
94 PRK05710 glutamyl-Q tRNA(Asp) 99.2 3.7E-10 8E-15 115.3 14.4 219 103-369 11-262 (299)
95 PLN02859 glutamine-tRNA ligase 99.2 3.4E-10 7.3E-15 127.2 14.8 277 76-386 245-564 (788)
96 COG0008 GlnS Glutamyl- and glu 99.1 6.4E-10 1.4E-14 120.1 14.3 230 102-368 14-279 (472)
97 TIGR03838 queuosine_YadB gluta 99.1 8.9E-10 1.9E-14 111.3 14.4 89 103-210 6-95 (272)
98 PF00749 tRNA-synt_1c: tRNA sy 99.0 3E-09 6.5E-14 110.4 11.5 89 103-210 7-96 (314)
99 cd07956 Anticodon_Ia_Arg Antic 98.7 1.2E-07 2.6E-12 88.5 11.4 135 356-491 2-152 (156)
100 cd07958 Anticodon_Ia_Leu_BEm A 98.6 4.8E-07 1E-11 79.5 11.3 115 377-500 1-116 (117)
101 cd07962 Anticodon_Ia_Val Antic 98.6 6E-07 1.3E-11 81.6 12.1 123 377-500 1-134 (135)
102 PF09190 DALR_2: DALR domain; 98.5 3.4E-07 7.4E-12 71.9 8.0 60 429-495 1-60 (63)
103 cd07959 Anticodon_Ia_Leu_AEc A 98.5 1.6E-06 3.5E-11 76.3 12.3 114 377-500 1-116 (117)
104 cd07957 Anticodon_Ia_Met Antic 98.4 3.8E-06 8.2E-11 75.1 12.7 87 413-500 35-128 (129)
105 cd07960 Anticodon_Ia_Ile_BEm A 98.4 3.7E-06 8E-11 80.3 12.6 125 377-502 1-140 (180)
106 KOG1149 Glutamyl-tRNA syntheta 98.4 2.6E-06 5.6E-11 88.7 12.1 241 103-386 39-331 (524)
107 cd07961 Anticodon_Ia_Ile_ABEc 98.3 8.1E-06 1.8E-10 78.2 13.4 126 377-503 1-142 (183)
108 smart00840 DALR_2 This DALR do 98.1 9.5E-06 2E-10 61.9 5.9 55 429-489 1-55 (56)
109 KOG1147 Glutamyl-tRNA syntheta 98.0 2.4E-05 5.1E-10 83.5 10.0 92 103-213 206-297 (712)
110 TIGR00233 trpS tryptophanyl-tR 98.0 0.00014 3E-09 76.1 14.3 80 281-368 127-217 (328)
111 PF08264 Anticodon_1: Anticodo 97.8 7.5E-05 1.6E-09 69.0 9.0 84 416-501 1-92 (153)
112 PRK13354 tyrosyl-tRNA syntheta 97.8 0.0001 2.2E-09 79.3 9.6 73 292-369 185-258 (410)
113 cd07955 Anticodon_Ia_Cys_like 97.7 9.2E-05 2E-09 61.2 6.9 59 379-456 1-60 (81)
114 cd00395 Tyr_Trp_RS_core cataly 97.7 5.7E-05 1.2E-09 77.0 6.8 76 100-180 2-80 (273)
115 cd07375 Anticodon_Ia_like Anti 97.7 0.00041 9E-09 60.3 11.2 84 380-464 2-88 (117)
116 PRK12285 tryptophanyl-tRNA syn 97.7 0.00036 7.8E-09 74.0 12.6 75 95-181 64-138 (368)
117 PF05746 DALR_1: DALR anticodo 97.7 0.00015 3.2E-09 64.2 8.2 75 416-491 35-115 (119)
118 cd00805 TyrRS_core catalytic c 97.7 0.0001 2.2E-09 75.1 7.8 76 100-180 3-81 (269)
119 PRK12284 tryptophanyl-tRNA syn 97.7 0.0032 7E-08 67.4 19.2 71 99-180 4-74 (431)
120 PRK05912 tyrosyl-tRNA syntheta 97.7 0.0009 1.9E-08 72.1 14.9 71 292-369 187-260 (408)
121 cd00806 TrpRS_core catalytic c 97.6 0.0004 8.6E-09 71.2 10.8 71 100-181 2-72 (280)
122 PRK08560 tyrosyl-tRNA syntheta 97.5 0.00018 3.9E-09 75.4 7.3 70 99-180 32-101 (329)
123 PRK12556 tryptophanyl-tRNA syn 97.5 0.0086 1.9E-07 62.8 18.8 72 99-181 5-76 (332)
124 PRK12282 tryptophanyl-tRNA syn 97.4 0.0071 1.5E-07 63.5 17.4 71 99-181 4-74 (333)
125 PLN02486 aminoacyl-tRNA ligase 97.4 0.0019 4.1E-08 68.8 13.1 76 95-181 71-147 (383)
126 PTZ00126 tyrosyl-tRNA syntheta 97.3 0.0015 3.2E-08 69.7 11.1 90 95-193 64-154 (383)
127 PRK12283 tryptophanyl-tRNA syn 97.3 0.004 8.6E-08 66.2 13.7 70 99-181 4-74 (398)
128 COG0180 TrpS Tryptophanyl-tRNA 97.3 0.0035 7.6E-08 64.6 12.8 194 98-352 6-212 (314)
129 KOG0437 Leucyl-tRNA synthetase 97.2 0.0015 3.2E-08 72.6 9.0 61 94-154 41-103 (1080)
130 COG0162 TyrS Tyrosyl-tRNA synt 97.1 0.0016 3.5E-08 69.4 8.0 54 294-350 181-235 (401)
131 PF00579 tRNA-synt_1b: tRNA sy 97.0 0.00039 8.6E-09 71.7 3.0 68 285-353 141-213 (292)
132 PRK00927 tryptophanyl-tRNA syn 96.8 0.019 4.1E-07 60.4 13.6 69 99-180 3-71 (333)
133 PLN02886 aminoacyl-tRNA ligase 96.7 0.069 1.5E-06 56.9 16.9 70 99-181 48-117 (389)
134 TIGR00234 tyrS tyrosyl-tRNA sy 96.7 0.0047 1E-07 65.9 8.0 39 98-140 31-70 (377)
135 KOG1148 Glutaminyl-tRNA synthe 96.6 0.0047 1E-07 67.1 7.4 90 103-211 254-343 (764)
136 smart00836 DALR_1 DALR anticod 96.5 0.009 1.9E-07 53.0 7.6 76 415-491 37-118 (122)
137 PTZ00348 tyrosyl-tRNA syntheta 96.4 0.012 2.7E-07 66.8 9.7 86 99-193 34-120 (682)
138 KOG2007 Cysteinyl-tRNA synthet 89.6 0.13 2.8E-06 55.5 0.8 49 516-565 470-526 (586)
139 COG1656 Uncharacterized conser 88.7 0.47 1E-05 44.1 3.6 88 124-227 18-105 (165)
140 PF01927 Mut7-C: Mut7-C RNAse 78.4 2.6 5.6E-05 38.9 3.9 32 124-157 12-43 (147)
141 PF02151 UVR: UvrB/uvrC motif; 72.1 6.6 0.00014 27.0 3.7 30 515-544 3-32 (36)
142 PF10009 DUF2252: Uncharacteri 61.1 27 0.00059 37.6 7.5 91 103-205 41-153 (385)
143 KOG0994 Extracellular matrix g 50.0 5.8E+02 0.013 31.5 16.3 22 441-462 1467-1488(1758)
144 PRK13671 hypothetical protein; 43.0 1.3E+02 0.0028 31.1 8.8 70 105-180 7-95 (298)
145 PF03033 Glyco_transf_28: Glyc 41.6 30 0.00066 30.5 3.6 26 112-140 9-34 (139)
146 COG2185 Sbm Methylmalonyl-CoA 41.1 56 0.0012 30.0 5.1 69 113-207 24-92 (143)
147 TIGR00640 acid_CoA_mut_C methy 40.5 70 0.0015 28.8 5.7 37 118-155 16-52 (132)
148 TIGR01501 MthylAspMutase methy 40.0 80 0.0017 28.6 6.0 65 120-207 17-81 (134)
149 PF14359 DUF4406: Domain of un 37.9 50 0.0011 27.8 4.1 33 99-136 1-33 (92)
150 PRK01233 glyS glycyl-tRNA synt 37.9 94 0.002 36.1 7.5 66 416-482 603-673 (682)
151 PLN02413 choline-phosphate cyt 37.3 40 0.00086 34.6 3.9 40 93-141 24-63 (294)
152 KOG2144 Tyrosyl-tRNA synthetas 37.2 12 0.00026 38.1 0.2 72 96-180 34-110 (360)
153 KOG2145 Cytoplasmic tryptophan 35.2 41 0.00088 34.4 3.5 77 93-180 81-158 (397)
154 KOG1610 Corticosteroid 11-beta 34.7 1E+02 0.0023 32.0 6.5 69 108-177 176-251 (322)
155 KOG2713 Mitochondrial tryptoph 34.6 99 0.0021 31.7 6.1 131 338-490 210-345 (347)
156 TIGR00211 glyS glycyl-tRNA syn 34.3 1.2E+02 0.0027 35.2 7.7 67 416-483 613-684 (691)
157 cd02072 Glm_B12_BD B12 binding 32.6 1.3E+02 0.0029 27.0 6.1 66 119-207 14-79 (128)
158 KOG2804 Phosphorylcholine tran 32.0 26 0.00057 35.9 1.6 55 76-143 47-101 (348)
159 PF00392 GntR: Bacterial regul 31.2 2.4E+02 0.0051 21.5 6.8 53 165-217 4-63 (64)
160 cd02156 nt_trans nucleotidyl t 28.9 29 0.00063 29.6 1.2 15 102-117 4-18 (105)
161 COG0751 GlyS Glycyl-tRNA synth 28.7 2.9E+02 0.0064 31.9 9.3 65 416-481 612-681 (691)
162 PHA02754 hypothetical protein; 28.3 88 0.0019 23.9 3.4 27 525-551 9-36 (67)
163 COG2257 Uncharacterized homolo 28.1 1.4E+02 0.003 25.1 4.9 61 136-203 25-86 (92)
164 cd02173 ECT CTP:phosphoethanol 27.1 97 0.0021 28.6 4.4 35 98-141 4-38 (152)
165 COG3286 Uncharacterized protei 25.6 72 0.0016 30.7 3.2 86 115-212 85-176 (204)
166 PF03698 UPF0180: Uncharacteri 24.9 69 0.0015 26.4 2.6 47 124-170 13-79 (80)
167 KOG2805 tRNA (5-methylaminomet 24.0 1.7E+02 0.0038 30.4 5.8 75 121-207 18-95 (377)
168 cd02174 CCT CTP:phosphocholine 22.1 1.4E+02 0.0029 27.6 4.4 19 96-116 2-20 (150)
169 COG3340 PepE Peptidase E [Amin 22.1 1E+02 0.0022 30.3 3.6 99 99-222 4-102 (224)
170 KOG2623 Tyrosyl-tRNA synthetas 21.9 1.5E+02 0.0032 31.8 5.0 38 99-140 65-103 (467)
171 PRK09620 hypothetical protein; 21.7 1.3E+02 0.0029 29.8 4.5 48 95-142 3-53 (229)
172 PRK14908 glycyl-tRNA synthetas 21.2 3.2E+02 0.007 33.2 8.2 90 390-482 894-993 (1000)
173 TIGR03590 PseG pseudaminic aci 20.4 1.2E+02 0.0027 30.7 4.1 62 111-178 13-80 (279)
174 COG2861 Uncharacterized protei 20.3 1.8E+02 0.004 29.1 5.0 90 125-215 70-160 (250)
175 PRK00488 pheS phenylalanyl-tRN 20.1 1E+03 0.023 25.1 11.0 24 532-555 111-134 (339)
176 PLN02199 shikimate kinase 20.0 2.2E+02 0.0047 29.6 5.8 126 14-173 26-160 (303)
No 1
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.9e-133 Score=1084.93 Aligned_cols=555 Identities=81% Similarity=1.271 Sum_probs=478.8
Q ss_pred hhhhhhcCCCccccccCCcC-Ccc-cccCCCCCCCCCCccccccccCCCCCccccccCCCCCCCCCCCCCCcceeeeecc
Q 008191 5 ILTLKCYKPLASIKFSPFIN-SFH-TLQLRPPKPNNRRVFRCFSTLNSSPNVIDDKSNGKTDGDDKPASASTQLWLYNTM 82 (574)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ntl 82 (574)
++++++|+||+|++||+.++ .++ ..+++|+.. .+.+-+.|+..++ ++++ .|.+..++|+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~------~~~~~~~~l~lyNTl 66 (557)
T PLN02946 1 LNLAKSCRPLTPLRLSSPPRSQLRIAFPLRPPKE-RQYRSCFFSASAL-------ASNG------APASRGRELHLYNTM 66 (557)
T ss_pred CchhhccCCcceeecCCchHHHHhhhcccCCCcc-cccccccchhhhh-------ccCC------CcCCCCCceEEEECC
Confidence 35789999999999999988 444 567777664 1344333332222 2445 788888999999999
Q ss_pred CCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHH
Q 008191 83 SRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISL 162 (574)
Q Consensus 83 ~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~ 162 (574)
||+||+|.|.++++|+||+|||||||++||||+|++|.+|+|+|||++.||+|.||+|+|||||||+.+|+++|++|+++
T Consensus 67 tr~ke~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~el 146 (557)
T PLN02946 67 SRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISL 146 (557)
T ss_pred CCCeeccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCcc
Q 008191 163 SRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERV 242 (574)
Q Consensus 163 a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v 242 (574)
+++|+++|+++|++|||.+++++||+|+|++.|+++|++|++||+||+++++||||++++++||+||+++++++..|++|
T Consensus 147 a~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv 226 (557)
T PLN02946 147 SRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERV 226 (557)
T ss_pred HHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCC
Q 008191 243 AVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNS 322 (574)
Q Consensus 243 ~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~ 322 (574)
+.+..|+||.||+|||.+++|+|.|++|||.||||||||||+|+.+|||.++|||+||+||+||||+||+||++|+.+++
T Consensus 227 ~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~ 306 (557)
T PLN02946 227 AVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDS 306 (557)
T ss_pred CcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCCC
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008191 323 HISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKA 402 (574)
Q Consensus 323 ~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~ 402 (574)
+++||||+|||+++|+|||||+||+|+++|++++|+++++|||+|++||+++++|+++.+.++.+.+.++++++.++...
T Consensus 307 ~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~ 386 (557)
T PLN02946 307 NISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEES 386 (557)
T ss_pred CCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888655
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHH
Q 008191 403 LSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRN 482 (574)
Q Consensus 403 l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~ 482 (574)
+............+..+...+..+.+.|.+||+|||||+.|++.|+++++.+|++++.........+...+..+...+..
T Consensus 387 l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~~~~~~~~~~~~~~~~~l~~~~~~~~~ 466 (557)
T PLN02946 387 LQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHTRKGKKQEKRLESLAALEKKIRD 466 (557)
T ss_pred hhhhcccccccccchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHH
Confidence 53211000000112223445667889999999999999999999999999999998653110011122334556667888
Q ss_pred HHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeCCCCeEEEECC
Q 008191 483 VLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWRPAL 562 (574)
Q Consensus 483 ~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt~~Gt~W~~~~ 562 (574)
++.+|||.+...++..++.........++.+++|+.||++|++||++|||++||+||++|.++||.|+|||+||+|++..
T Consensus 467 ~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR~~L~~~Gi~l~Dt~~Gt~w~~~~ 546 (557)
T PLN02946 467 VLSVLGLMPTSYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAI 546 (557)
T ss_pred HHHHcCCCchhhhhhhhhhhhhhhhcccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEECCCCceEEEcC
Confidence 88999996532111111111111111223356799999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcC
Q 008191 563 PLALQEQAVAT 573 (574)
Q Consensus 563 ~~~~~~~~~~~ 573 (574)
|+.+|++|+++
T Consensus 547 ~~~~~~~~~~~ 557 (557)
T PLN02946 547 PLALQEQVAAT 557 (557)
T ss_pred CCccccccccC
Confidence 99999999875
No 2
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-130 Score=1021.16 Aligned_cols=456 Identities=51% Similarity=0.895 Sum_probs=411.8
Q ss_pred ceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH
Q 008191 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE 154 (574)
Q Consensus 75 ~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~ 154 (574)
.|+|||||||+||+|.|.++++|+||+||||||+.+||||+|++|.+|+++|+|+++||+|.||+|+||+|||||++|.+
T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~ 80 (464)
T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRARE 80 (464)
T ss_pred CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee-cCceeecCCCCCCcccccCc-c
Q 008191 155 LGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGR-K 232 (574)
Q Consensus 155 ~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~-~~~v~f~~~~~~~yg~Ls~~-~ 232 (574)
.|.++.+++++|+++|++||++|||.+|+.+||+|+||++|+++|++|++||+||+. +|+|||++.++++||+||++ .
T Consensus 81 ~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~ 160 (464)
T COG0215 81 EGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDS 160 (464)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCC
Confidence 999999999999999999999999988999999999999999999999999999998 78999999999999999976 8
Q ss_pred cccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHH
Q 008191 233 LEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI 312 (574)
Q Consensus 233 ~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~ 312 (574)
++++..|.++..+..|+||.||+|||.+++|+|+|+||||.||||||||||+|+.++||.++|||+||.||+||||+||+
T Consensus 161 le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEi 240 (464)
T COG0215 161 LEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEI 240 (464)
T ss_pred hhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccC-CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHH
Q 008191 313 AQSCAACN-NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFY 391 (574)
Q Consensus 313 A~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~ 391 (574)
||++|+++ ++|++||||+|||+++|+|||||+||||+++|++++|+|++||||||++|||+|++||++.|+++.+.+.+
T Consensus 241 AQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~r 320 (464)
T COG0215 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALER 320 (464)
T ss_pred HHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence 99999998 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHH
Q 008191 392 IYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLE 471 (574)
Q Consensus 392 l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~ 471 (574)
|++++.++....... .. ....++...|.+||+|||||+.|++.|+++++.+|...+.....
T Consensus 321 l~~~~~~~~~~~~~~---------~~---~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~~------- 381 (464)
T COG0215 321 LYNALRRLRDLAGDA---------EL---ADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKSD------- 381 (464)
T ss_pred HHHHHHHHHhhcccc---------cc---chhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhccccc-------
Confidence 999988765322110 00 03456777899999999999999999999999998776543210
Q ss_pred HHHHHHHHHHHHHhh-----hccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCC
Q 008191 472 SLAALEKTIRNVLTV-----LGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546 (574)
Q Consensus 472 ~l~~~~~~l~~~l~i-----LGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~G 546 (574)
...++..+..++.+ ||+.+... . ...+..+++|+.||++|++||++|||++||+|||+|.++|
T Consensus 382 -~~~~~~~~~~~~~~lg~~~l~~~~~~~----~-------~~~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~G 449 (464)
T COG0215 382 -AKAVLSALKALLAILGLKVLGLFPQSG----A-------QEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALG 449 (464)
T ss_pred -hHHHHHHHHHHHHHhCchhhccccccc----c-------ccccchHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCC
Confidence 11223333344444 44544221 0 0112257889999999999999999999999999999999
Q ss_pred cEEEeCCCCeEEEEC
Q 008191 547 IALMDSPVGTTWRPA 561 (574)
Q Consensus 547 I~leDt~~Gt~W~~~ 561 (574)
|.|+|||+||+|++.
T Consensus 450 i~leD~~~gt~w~~~ 464 (464)
T COG0215 450 IILEDTPDGTTWRRK 464 (464)
T ss_pred cEEEECCCCeEEEeC
Confidence 999999999999973
No 3
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-120 Score=984.67 Aligned_cols=459 Identities=47% Similarity=0.830 Sum_probs=412.6
Q ss_pred CCcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHH
Q 008191 72 ASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIAR 151 (574)
Q Consensus 72 ~~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~ 151 (574)
..++|+|||||||+||+|.|.++++|+||+||||||+++||||+|++|.+|+++|||++.||+|.||+|+|||||||+.+
T Consensus 224 ~~~~l~lyNTltr~ke~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~ 303 (699)
T PRK14535 224 HNPMTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIAR 303 (699)
T ss_pred ccCceEEEECCCCCeeccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHH
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee-cCceeecCCCCCCcccccC
Q 008191 152 ANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSG 230 (574)
Q Consensus 152 A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~-~~~v~f~~~~~~~yg~Ls~ 230 (574)
|+++|++|++++++|+++|.++|++|||.+++++||+|+|++.|+++|++|+++|+||++ .|+||||+++++.||+||+
T Consensus 304 A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~ 383 (699)
T PRK14535 304 AAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSG 383 (699)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999987 6799999999999999999
Q ss_pred cccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchH
Q 008191 231 RKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHEN 310 (574)
Q Consensus 231 ~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~ 310 (574)
++++++..|++|+.+.+|+||.||+|||.+++|+|.|++|||.||||||||||+|+.++||.++|||+||.||+||||+|
T Consensus 384 ~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHEN 463 (699)
T PRK14535 384 KSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHEN 463 (699)
T ss_pred CChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCCCCcc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCC----------------CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCC
Q 008191 311 EIAQSCAACNN----------------SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374 (574)
Q Consensus 311 ~~A~~~a~~~~----------------~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~ 374 (574)
|+||++|+.++ +|++||||+|||+++|+|||||+||+|+++|++++|++|++|||++++||+++
T Consensus 464 EiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLsshYRsp 543 (699)
T PRK14535 464 EIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSP 543 (699)
T ss_pred HHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 99999998765 48999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 008191 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTI 454 (574)
Q Consensus 375 ~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~ 454 (574)
++||++.|+++.+.+.++++++.++... . ..+...+..+.+.|.+||+||||||.|++.|+++++.+
T Consensus 544 L~fS~e~Le~Ak~~l~Rl~~~l~~~~~~-~------------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lvk~i 610 (699)
T PRK14535 544 LNYSDAHLDDAKGALTRLYTTLKNTPAA-E------------FMLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEV 610 (699)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHhhhhc-c------------chhhhhHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 9999999999999999998887654210 0 01122345678899999999999999999999999999
Q ss_pred HHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHH
Q 008191 455 NDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEK 534 (574)
Q Consensus 455 N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~ 534 (574)
|+... ..+...+..++.+|||......+.... . ....++.+++|+.||++|++||++|||++
T Consensus 611 N~~~~--------------~~~~~~l~~~~~vLGl~~~~~~~~~~~---~-~~~~~~~~~~i~~Li~~R~~AR~~Kdfa~ 672 (699)
T PRK14535 611 NKTND--------------AQLAGCLKALGGIIGLLQRDPTEFLQG---G-AASDGLSNEEIEDLIARRKQARADKNWAE 672 (699)
T ss_pred HHHHH--------------HHHHHHHHHHHhhcCCCccchhhhhhc---c-cccccCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 98631 112344556778899853221111110 0 00112235679999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEeCCCCeEEEEC
Q 008191 535 SDAIRKDLAAVGIALMDSPVGTTWRPA 561 (574)
Q Consensus 535 AD~IRd~L~~~GI~leDt~~Gt~W~~~ 561 (574)
||+|||+|.++||.|+||++||+|++.
T Consensus 673 AD~IRd~L~~~GI~veDt~~Gt~W~~~ 699 (699)
T PRK14535 673 SDRIRDLLNEHKIILEDNAGGTTWRRG 699 (699)
T ss_pred HHHHHHHHHHCCCEEEEcCCCceEeeC
Confidence 999999999999999999999999863
No 4
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.2e-118 Score=954.68 Aligned_cols=467 Identities=37% Similarity=0.633 Sum_probs=411.9
Q ss_pred ceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccc----------
Q 008191 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDV---------- 144 (574)
Q Consensus 75 ~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~---------- 144 (574)
.|+|||||||+||+|.|.++++|+||+||||||+++||||+|++|.+|+++|||++.||+|.||+|+||+
T Consensus 2 ~l~lyntlt~~ke~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ 81 (490)
T PRK14536 2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSG 81 (490)
T ss_pred ceEEEecCCCCeeccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCC
Q 008191 145 DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPE 224 (574)
Q Consensus 145 g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~ 224 (574)
|+||+.+|+++|++|++++++|+++|+++|++|||.+++++||+|+|++.|+++|++|+++|+||+++++||||+.+|+.
T Consensus 82 ddKii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 161 (490)
T PRK14536 82 EDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPS 161 (490)
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcccc
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred cccccCcccccccCCCccccCCCccCccchhhccccc--CC-CCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccc
Q 008191 225 YGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAK--EG-EPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301 (574)
Q Consensus 225 yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~--~g-~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~ 301 (574)
||+||+++++++..|.+++.+..|+||.||+|||..+ ++ +|+|++|||.||||||||||+|+.+|||.++|||+||+
T Consensus 162 YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~ 241 (490)
T PRK14536 162 YGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGV 241 (490)
T ss_pred hhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccc
Confidence 9999999999998999888888899999999999864 33 58999999999999999999999999999999999999
Q ss_pred cccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCCCCCCCCHH
Q 008191 302 DLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYRSPINYSVV 380 (574)
Q Consensus 302 Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~~~~~fs~~ 380 (574)
||+||||+||+||++|+++++|++||||+|||+++|+|||||+||+|+++|+++. |+++++|||+|++||+++++||++
T Consensus 242 DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e 321 (490)
T PRK14536 242 DHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWE 321 (490)
T ss_pred cCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhc---C-C-CCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 008191 381 QLESASERIFYIYQTLHDCEKALSLLDA--AAL---K-D-SIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKT 453 (574)
Q Consensus 381 ~l~~a~~~l~~l~~~l~~~~~~l~~~~~--~~~---~-~-~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~ 453 (574)
.|.++.+.+.+|++++..+......... ... . . .....+...+..+.+.|.+||+||||||.|++.|+++++.
T Consensus 322 ~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~~ 401 (490)
T PRK14536 322 ALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKD 401 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 9999999999999998877543211000 000 0 0 0001122345678899999999999999999999999999
Q ss_pred HHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhcccccc-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcH
Q 008191 454 INDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTG-YSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEY 532 (574)
Q Consensus 454 ~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~-~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf 532 (574)
+|.-. ..+...+..++.+|||.... ..+. +.. .......+++|+.||++|++||++|||
T Consensus 402 ~n~~~---------------~~~~~~~~~~~~vLGl~~~~~~~~~---~~~--~~~~~~~~~~i~~li~~R~~aR~~kdf 461 (490)
T PRK14536 402 TSVPP---------------SLCLSVLQAMDTVLGLGLIQEATAS---LSA--QVPAGPSEEEIGQLIEARAHARQTKDF 461 (490)
T ss_pred hhhhH---------------HHHHHHHHHHHhhcCcccccchhhh---hhh--cccccCCHHHHHHHHHHHHHHHHhCCH
Confidence 98510 12445666778899985211 0111 100 001112245799999999999999999
Q ss_pred HHHHHHHHHhHhCCcEEEeCCCCeEEEEC
Q 008191 533 EKSDAIRKDLAAVGIALMDSPVGTTWRPA 561 (574)
Q Consensus 533 ~~AD~IRd~L~~~GI~leDt~~Gt~W~~~ 561 (574)
++||+||++|.++||.|+|||+||+|++.
T Consensus 462 ~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~~ 490 (490)
T PRK14536 462 PLADEIRDKLKAEGIELEDTHLGTIWKRV 490 (490)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCceEEeC
Confidence 99999999999999999999999999863
No 5
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1e-115 Score=933.66 Aligned_cols=464 Identities=33% Similarity=0.564 Sum_probs=405.1
Q ss_pred ceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccc----------
Q 008191 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDV---------- 144 (574)
Q Consensus 75 ~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~---------- 144 (574)
.|+||||+||+||+|+|. ++|+||+||||||+++||||+|++|.+|+++|||+++||+|.||+|+||+
T Consensus 2 ~l~lynTltr~ke~f~p~--~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~g 79 (481)
T PRK14534 2 LLKLYNTKTKDLSELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDG 79 (481)
T ss_pred ceEEEEcCCCCeeecccC--CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCC
Confidence 599999999999999996 79999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCC
Q 008191 145 DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPE 224 (574)
Q Consensus 145 g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~ 224 (574)
||||+.+|+++|++|++++++|.+.|+++|++|||.+++++|++|+|++.|+++|++|++||+||+++++||||+.+++.
T Consensus 80 ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 159 (481)
T PRK14534 80 EDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKS 159 (481)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccccc--CCCccccCCCccCccchhhcccc---cCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeec
Q 008191 225 YGQLSGRKLEDNR--AGERVAVDSRKKNPADFALWKSA---KEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGG 299 (574)
Q Consensus 225 yg~Ls~~~~~~~~--~g~~v~~~~~k~~~~Df~lwk~~---~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~ 299 (574)
||+||+++++++. .|.+++++..|+||.||+|||.. ++++|+|++|||.||||||||||+|+.++||.++|||+|
T Consensus 160 YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~G 239 (481)
T PRK14534 160 YGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLG 239 (481)
T ss_pred hhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEec
Confidence 9999999999876 78888888889999999999975 788999999999999999999999999999999999999
Q ss_pred cccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCCCCCCCC
Q 008191 300 GMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYRSPINYS 378 (574)
Q Consensus 300 G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~~~~~fs 378 (574)
|+||+||||+||+||++|+.+.++++||||+|||+++|+|||||+||+|+++|++++ |+++++|||++++||++|++||
T Consensus 240 G~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs 319 (481)
T PRK14534 240 GVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFT 319 (481)
T ss_pred ccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 008191 379 VVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLL 458 (574)
Q Consensus 379 ~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~ 458 (574)
++.|+++.+.+.++++++..+...+............+........++.+.|.+||+||||||.|++.|+++++.+|...
T Consensus 320 ~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~k~~n~~~ 399 (481)
T PRK14534 320 FNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNLSF 399 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998876644332110000000000000112345678999999999999999999999999999741
Q ss_pred HhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHH
Q 008191 459 HTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAI 538 (574)
Q Consensus 459 ~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~I 538 (574)
.. .. . +...+..++. ||+.... ...+. . .....+++|+.||++|++||++|||++||+|
T Consensus 400 --~~------~~---~-~~~~~~~~~~-lg~~~~~----~~~~~---~-~~~~~~~~i~~li~~R~~aR~~Kd~~~AD~i 458 (481)
T PRK14534 400 --LS------KL---R-LAFKFDEVLS-LGLREEI----LREIE---N-HRIVIDDNMKSLIEERRLAKCEKDFKRADEI 458 (481)
T ss_pred --hh------HH---H-HHHHHHHHHh-CCCCccc----chhhc---c-ccccCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 00 01 1 2234555555 7874211 11110 0 0112356799999999999999999999999
Q ss_pred HHHhHhCCcEEEeCCCCeEEEEC
Q 008191 539 RKDLAAVGIALMDSPVGTTWRPA 561 (574)
Q Consensus 539 Rd~L~~~GI~leDt~~Gt~W~~~ 561 (574)
|++|.++||.|+|||+||+|++.
T Consensus 459 R~~L~~~Gi~l~Dt~~Gt~w~~~ 481 (481)
T PRK14534 459 REYFASKGFVLIDTEEGTKVKRG 481 (481)
T ss_pred HHHHHHCCCEEEEcCCCCEEEeC
Confidence 99999999999999999999863
No 6
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=6e-114 Score=934.29 Aligned_cols=463 Identities=53% Similarity=0.926 Sum_probs=424.9
Q ss_pred cceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHH
Q 008191 74 TQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARAN 153 (574)
Q Consensus 74 ~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~ 153 (574)
+.|+||||+||++|+|.|..+++|+||+|||||||++||||+|+||.+|+++||||+.||+|.|++|+||+|+||+.+|+
T Consensus 1 ~~l~~~ntl~~~~~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~ 80 (463)
T PRK00260 1 MMLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRAN 80 (463)
T ss_pred CceEEEECCCCceeecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCccc
Q 008191 154 ELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKL 233 (574)
Q Consensus 154 ~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~ 233 (574)
++|++|++++++|+++|.++|++|||..+|+++|+|+|++.+++++++|+++|+||+++++||||++++++||+||++++
T Consensus 81 ~~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~ 160 (463)
T PRK00260 81 EEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNL 160 (463)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCH
Confidence 99999999999999999999999999778999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHH
Q 008191 234 EDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIA 313 (574)
Q Consensus 234 ~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A 313 (574)
+++..|.+++.+.+|+||.||+|||.+++|++.|++|||.||||||||||+|+.+++|.++|||+||+||+||||+|++|
T Consensus 161 ~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neia 240 (463)
T PRK00260 161 DELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIA 240 (463)
T ss_pred HHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHH
Confidence 99888999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 008191 314 QSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIY 393 (574)
Q Consensus 314 ~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~ 393 (574)
|++|+.+++|+++|+|+|||.++|+|||||+||+|++.|++++|++|++|||+++++|+++++|+++.+.++.+.+.+++
T Consensus 241 qs~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~ 320 (463)
T PRK00260 241 QSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLY 320 (463)
T ss_pred HHHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHH
Q 008191 394 QTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESL 473 (574)
Q Consensus 394 ~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l 473 (574)
+++..+.. ...+.++...+..+.+.|.+||+||||++.|++.|+++++.+|++++... ...+
T Consensus 321 ~~~~~~~~-----------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~~~-------~~~~ 382 (463)
T PRK00260 321 NALAETAL-----------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALETKD-------KEAA 382 (463)
T ss_pred HHHHHhhh-----------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccc-------HHHH
Confidence 98876531 12335667778889999999998899999999999999999999986531 2234
Q ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeCC
Q 008191 474 AALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSP 553 (574)
Q Consensus 474 ~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt~ 553 (574)
..+...+..++.+|||....... . ........+++|+.|+++|++||++|||++||+|||+|.++||.|+|++
T Consensus 383 ~~~~~~~~~~~~ilG~~~~~~~~-~------~~~~~~~~~~~~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~v~D~~ 455 (463)
T PRK00260 383 AALAALLRALADVLGLEQDEEAL-F------EAAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTP 455 (463)
T ss_pred HHHHHHHHHHHHhcCCCchhhhh-h------hcccccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEcC
Confidence 55667788889999995321110 0 0001123466799999999999999999999999999999999999999
Q ss_pred CCeEEEEC
Q 008191 554 VGTTWRPA 561 (574)
Q Consensus 554 ~Gt~W~~~ 561 (574)
+||+|++.
T Consensus 456 ~G~~w~~~ 463 (463)
T PRK00260 456 DGTTWRRK 463 (463)
T ss_pred CCceEEeC
Confidence 99999863
No 7
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=2e-113 Score=955.15 Aligned_cols=489 Identities=36% Similarity=0.610 Sum_probs=429.5
Q ss_pred CcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHH-HcCCeeEEEcCCccccHHHHHH
Q 008191 73 STQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLR-HLGYEVCYVRNFTDVDDKIIAR 151 (574)
Q Consensus 73 ~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr-~~G~~V~~v~~~dD~g~kI~~~ 151 (574)
.++|+|||||||+||+|.|.++++|+||+||||||+.+||||||+||.+|+|+|||+ ++||+|.||+|+||||||||.+
T Consensus 37 ~~~l~lyNtlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~ 116 (651)
T PTZ00399 37 LTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKR 116 (651)
T ss_pred CCceEEEECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHcCCC-hHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCC----Ccc
Q 008191 152 ANELGED-PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP----EYG 226 (574)
Q Consensus 152 A~~~g~~-~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~----~yg 226 (574)
|+++|++ +.++|++|+++|.++|++|||.+|++++|+|+|+++|+++|++|+++|+||+++|+|||++++++ .||
T Consensus 117 A~~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg 196 (651)
T PTZ00399 117 AREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYP 196 (651)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999997 899
Q ss_pred cccC---cccccccCCCc-c-ccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccc
Q 008191 227 QLSG---RKLEDNRAGER-V-AVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301 (574)
Q Consensus 227 ~Ls~---~~~~~~~~g~~-v-~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~ 301 (574)
+|++ .+.+.+..|++ + +.+..|++|.||+|||..++|+|.|+||||.|||||||||++|+..+||.++|||+||+
T Consensus 197 ~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~ 276 (651)
T PTZ00399 197 KLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGI 276 (651)
T ss_pred hhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCC
Confidence 9984 44555566775 5 34457999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHH
Q 008191 302 DLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVV 380 (574)
Q Consensus 302 Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~ 380 (574)
||+||||+||+||++|++++ +|++||+|+|||+++|+|||||+||||+|+|+|+.||+|++|||||+.+|+++++||++
T Consensus 277 DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e 356 (651)
T PTZ00399 277 DLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDE 356 (651)
T ss_pred CCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHH
Confidence 99999999999999999987 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Q 008191 381 QLESASERIFYIYQTLHDCEKALSLLDA--AALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLL 458 (574)
Q Consensus 381 ~l~~a~~~l~~l~~~l~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~ 458 (574)
.+.++.+...++++.+.++...+..... .....+.+.+++..+.++.+.|.++|+|||+++.|+++|++|++.+|+|+
T Consensus 357 ~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi 436 (651)
T PTZ00399 357 SMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYL 436 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888887777554432110 00112345677888899999999999899999999999999999999999
Q ss_pred HhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhh----h-----
Q 008191 459 HTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARK----N----- 529 (574)
Q Consensus 459 ~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~----~----- 529 (574)
+.. ...+..++..+..+|..++.+|||.+....-.++. ... ........|+.|++.|+++|+ +
T Consensus 437 ~~~----~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m~~~~~--~~~--~~~~~~~~i~~l~~~R~~~R~~a~~~~~~~~ 508 (651)
T PTZ00399 437 NSG----EQPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQG--QNS--TSENFKPLLEALLRFRDEVRDAAKAEMKLIS 508 (651)
T ss_pred hcc----ccchHHHHHHHHHHHHHHHhcccCCcchhhccccc--ccc--chhhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 631 12345567778889999999999964221000000 000 001123558899999999994 4
Q ss_pred ------hcHHHHHHHHH-HhHhCCcEEEeCCCC-eEEEECCchhhhhh
Q 008191 530 ------KEYEKSDAIRK-DLAAVGIALMDSPVG-TTWRPALPLALQEQ 569 (574)
Q Consensus 530 ------Kdf~~AD~IRd-~L~~~GI~leDt~~G-t~W~~~~~~~~~~~ 569 (574)
|+|++||+||| +|.++||.|+|+++| |+|++.++.+++..
T Consensus 509 ~~~~~~~~~~~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~ 556 (651)
T PTZ00399 509 LDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQRE 556 (651)
T ss_pred chhhhhhHHHHHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHH
Confidence 88999999999 599999999999999 79999998876543
No 8
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-113 Score=881.50 Aligned_cols=506 Identities=45% Similarity=0.750 Sum_probs=432.5
Q ss_pred CCCCCCC-CCCCcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHH-HcCCeeEEEcC
Q 008191 63 TDGDDKP-ASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLR-HLGYEVCYVRN 140 (574)
Q Consensus 63 ~~~~~~~-~~~~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr-~~G~~V~~v~~ 140 (574)
.+-.+.| .+.+++|+|||||||+||+|.|.++++|+||+||||||+..||||||+||.+|+|+|+|+ +.||+|.||+|
T Consensus 21 q~~w~~p~~~~~~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmN 100 (586)
T KOG2007|consen 21 QPHWDQPNAGQPTELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMN 100 (586)
T ss_pred CcccCCCCCCCCCeEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEec
Confidence 3444566 788889999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred CccccHHHHHHHH--HcCCCh---HHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCce
Q 008191 141 FTDVDDKIIARAN--ELGEDP---ISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDV 215 (574)
Q Consensus 141 ~dD~g~kI~~~A~--~~g~~~---~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v 215 (574)
|||+|||||.+|+ +.++.| .+.-..|+++|.+||.+|||.+||+.+|+|+|+++|+.+|++|+++|++|..+|+|
T Consensus 101 iTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsV 180 (586)
T KOG2007|consen 101 ITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSV 180 (586)
T ss_pred ccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcE
Confidence 9999999999997 234444 44433688999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC-CcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCc
Q 008191 216 YFSVDKFP-EYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSF 294 (574)
Q Consensus 216 ~f~~~~~~-~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~ 294 (574)
|||+.+++ .||+|+|+. +.+..|+.+..+..|++|.||+|||.+|+|||+|++|||.||||||||||+|+..+||..+
T Consensus 181 YFdv~kf~~~YgKL~G~~-~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~l 259 (586)
T KOG2007|consen 181 YFDVDKFPHSYGKLVGQR-KNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQL 259 (586)
T ss_pred EEecccccchhhhhcCch-hhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhcccc
Confidence 99999999 599999765 6777888887778899999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCC
Q 008191 295 DIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRS 373 (574)
Q Consensus 295 dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~ 373 (574)
|||+||+|+.||||+||+||++|++.. +|++||+|+|||+++|+|||||++||||++|+|+.|+|++||++||..+|++
T Consensus 260 DIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~ 339 (586)
T KOG2007|consen 260 DIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRS 339 (586)
T ss_pred ceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999865 6999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q 008191 374 PINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKT 453 (574)
Q Consensus 374 ~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~ 453 (574)
+++|+...|..+.+....+.+++..+................+.++.+.+.....+|+.|++|+|+|+.++..+.+++..
T Consensus 340 ~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~ 419 (586)
T KOG2007|consen 340 PLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQ 419 (586)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 99999999988877555444444444333332211123445567788888999999999999999999999999999999
Q ss_pred HHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhccccc-cHH--------HHH---HHH----HHHH------------
Q 008191 454 INDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMST-GYS--------EVL---LQL----REKA------------ 505 (574)
Q Consensus 454 ~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~-~~~--------~i~---~~l----~~~~------------ 505 (574)
+|.|+.... ......+|..+..+|..++.++|+.+. ... ... .++ ++.+
T Consensus 420 ~N~~i~~~~---~~~~~~~L~~I~~yIt~~l~ifG~~e~~g~q~~~e~~~m~~v~~L~~fr~~vRe~a~~~~~~~iL~l~ 496 (586)
T KOG2007|consen 420 GNAYIRESG---ERPNSALLKAIASYITKLLKIFGLSEGKGQQYVLEATVMPYVQSLSEFREKVREVAREKKVPEILELC 496 (586)
T ss_pred hhHHHHHhc---cccchHHHHHHHHHHHHHHHHhCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHh
Confidence 999998765 123346778888999999999998741 000 001 111 1111
Q ss_pred -------Hhhcc--------------ccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeCCCCeEEEECCch
Q 008191 506 -------LKRAD--------------LTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWRPALPL 564 (574)
Q Consensus 506 -------~~~~~--------------~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt~~Gt~W~~~~~~ 564 (574)
+...+ +..+++.+..++|..++++|+++++|++|.+++..||.++|.+.++.|+...++
T Consensus 497 d~lR~~~l~~~g~~led~~g~~lvk~v~~e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~a~~~i~p~~~f~~~~ys 576 (586)
T KOG2007|consen 497 DTLRDSDLLELGVRLEDRKGSTLVKAVDREELLQEREEKTSAEKNKDKEKSDRIREELAAKGIALMKIPPEEMFRPDKYS 576 (586)
T ss_pred HHHHHhhHHHhhhHHHhCCchHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhhcCChhhhccccccc
Confidence 00000 112345566778888999999999999999999999999999999999999888
Q ss_pred hhhhhhhc
Q 008191 565 ALQEQAVA 572 (574)
Q Consensus 565 ~~~~~~~~ 572 (574)
..+++...
T Consensus 577 ~~de~g~p 584 (586)
T KOG2007|consen 577 AFDESGLP 584 (586)
T ss_pred ccccCCCC
Confidence 87776543
No 9
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=6e-113 Score=924.35 Aligned_cols=463 Identities=49% Similarity=0.858 Sum_probs=411.8
Q ss_pred eeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc
Q 008191 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL 155 (574)
Q Consensus 76 l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~ 155 (574)
|+|||||||+||+|.|.++++|+||+|||||||++||||+|++|.+|+++||||++||+|.|++|+||+|+||+.+|+++
T Consensus 1 l~lyntlt~~~e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~ 80 (465)
T TIGR00435 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAREN 80 (465)
T ss_pred CeeEeCCCCCeeccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeec-CceeecCCCCCCcccccCcccc
Q 008191 156 GEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLE 234 (574)
Q Consensus 156 g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~-~~v~f~~~~~~~yg~Ls~~~~~ 234 (574)
|++|++++++|.+.|.++|++|||..+++++|+|+|++.|+++|++|+++|+||+++ ++||||+.+++.||+||+++++
T Consensus 81 g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~ 160 (465)
T TIGR00435 81 GESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLD 160 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHH
Confidence 999999999999999999999999877878999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHH
Q 008191 235 DNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314 (574)
Q Consensus 235 ~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~ 314 (574)
++..|.+++.+.+|+||.||+|||.+++|+|+|++|||.||||||||||+|+.++||.++|||+||+||+||||+|++||
T Consensus 161 ~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aq 240 (465)
T TIGR00435 161 QLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ 240 (465)
T ss_pred HHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHH
Confidence 88889999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 008191 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQ 394 (574)
Q Consensus 315 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~ 394 (574)
++|+++++|+++|+|+|||+++|+|||||+||+|+++|+++.|++|++|||+++++|+++++|+++.+.++.+.+.+|++
T Consensus 241 s~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl~~ 320 (465)
T TIGR00435 241 SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYK 320 (465)
T ss_pred HHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH-HHHHhhhcchhhhhHHHH
Q 008191 395 TLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTIN-DLLHTRKGKKQAMRLESL 473 (574)
Q Consensus 395 ~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N-~~~~~~~~~~~~~~~~~l 473 (574)
++.++....... . ..+.........+.+.|.+||+||||||.|++.|+++++.+| ..++. ..+
T Consensus 321 ~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~----------~~~ 384 (465)
T TIGR00435 321 ALRVLDTTLAYS---G---NQSLNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSINLTFVSK----------ADA 384 (465)
T ss_pred HHHHHHhhhccc---c---ccccccchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhhcch----------HHH
Confidence 988764332110 0 001111123446778999999999999999999999999999 43321 012
Q ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeCC
Q 008191 474 AALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSP 553 (574)
Q Consensus 474 ~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt~ 553 (574)
..+...+..++.+|||+.....+..+. .. ......+|++||++|++||++|||++||+||++|.++||.|+|||
T Consensus 385 ~~~~~~~~~l~~~lg~~~~~~~~~~~~----~~--~~~~~~~i~~l~~~R~~ar~~k~~~~aD~iR~~L~~~Gi~~~D~~ 458 (465)
T TIGR00435 385 ALLIEHLIFLESRLGLLLGLPSKPVQA----GS--NDDELGEIEALIEERSIARKEKDFAKADEIRDELLKKGIVLEDTP 458 (465)
T ss_pred HHHHHHHHHHHHhcccCccccchhccc----cc--ccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEECC
Confidence 335566777888899852111000000 00 000114689999999999999999999999999999999999999
Q ss_pred CCeEEEE
Q 008191 554 VGTTWRP 560 (574)
Q Consensus 554 ~Gt~W~~ 560 (574)
+||+|++
T Consensus 459 ~gt~w~~ 465 (465)
T TIGR00435 459 QGTTWRR 465 (465)
T ss_pred CCceeeC
Confidence 9999974
No 10
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=5.8e-104 Score=828.52 Aligned_cols=373 Identities=38% Similarity=0.657 Sum_probs=346.8
Q ss_pred CCCCCCCCCCCcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCc
Q 008191 63 TDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFT 142 (574)
Q Consensus 63 ~~~~~~~~~~~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~d 142 (574)
+|+-+..++.+++|+|||||||+||+|.| +++|+||+||||||+++||||+|++|.+|+++||||+.||+|.||+|+|
T Consensus 5 ~~~~~~~~~~~~~l~lyntlt~~~~~f~p--~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nit 82 (411)
T TIGR03447 5 APEVPALPGTGPPLRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVT 82 (411)
T ss_pred CCCCCCCCCCCCceEEEECCCCCeeeccC--CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCC
Confidence 34445556677889999999999999999 7899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecC----ceeec
Q 008191 143 DVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDG----DVYFS 218 (574)
Q Consensus 143 D~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~----~v~f~ 218 (574)
||||||+.+|+++|++|++++++|+++|+++|++|||.+++.++|+|+|++.|+++|++|+++|+||++++ +|||+
T Consensus 83 D~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFd 162 (411)
T TIGR03447 83 DVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFS 162 (411)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEe
Confidence 99999999999999999999999999999999999998899999999999999999999999999999876 89999
Q ss_pred CCCCCCcccccCcccccccC--CCc-cccCC-CccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCc
Q 008191 219 VDKFPEYGQLSGRKLEDNRA--GER-VAVDS-RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSF 294 (574)
Q Consensus 219 ~~~~~~yg~Ls~~~~~~~~~--g~~-v~~~~-~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~ 294 (574)
++++++||+||+++++++.. +.+ ++.+. .|+||.||+|||.+++|+|.|++|||.||||||||||+|+.++||.++
T Consensus 163 v~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~ 242 (411)
T TIGR03447 163 IEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGF 242 (411)
T ss_pred ccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCce
Confidence 99999999999999988765 454 66644 599999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCC
Q 008191 295 DIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYR 372 (574)
Q Consensus 295 dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~ 372 (574)
|||+||+||+||||+||+||++|+.++ +|+++|||+|+|.++|+|||||+||+|+++|+++. |+++++|||++++||+
T Consensus 243 Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr 322 (411)
T TIGR03447 243 DIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYR 322 (411)
T ss_pred ecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCC
Confidence 999999999999999999999999887 99999999999999999999999999999999986 9999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008191 373 SPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK 452 (574)
Q Consensus 373 ~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~ 452 (574)
++++||++.|.++.+.+.+|++++.++. . . .+.++...|.+||+||||++.|++.|+++++
T Consensus 323 ~pl~fs~e~l~~a~~~l~rl~~~~~~~~------------~---~----~~~~~~~~~~~al~dDln~p~a~~~l~~~~~ 383 (411)
T TIGR03447 323 QDRDWTDAVLAEAEARLARWRAALAATD------------A---P----DATDLIARLRQHLANDLDTPAALAAVDNWAA 383 (411)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHhhcc------------c---c----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999999999999998888765321 0 0 1234667899999999999999999999999
Q ss_pred HHHH
Q 008191 453 TIND 456 (574)
Q Consensus 453 ~~N~ 456 (574)
.+|.
T Consensus 384 ~~n~ 387 (411)
T TIGR03447 384 AALS 387 (411)
T ss_pred HHHh
Confidence 9885
No 11
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-98 Score=783.17 Aligned_cols=354 Identities=39% Similarity=0.664 Sum_probs=329.1
Q ss_pred ccCCCC-ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHH
Q 008191 90 KPKVEG-KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCE 168 (574)
Q Consensus 90 ~p~~~~-~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~ 168 (574)
.|.++| +|+||+||||||+++||||+|++|.+|+++|+||++||+|.||+|+|||||||+.+|+++|++|+++|++|++
T Consensus 2 ~p~~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~ 81 (384)
T PRK12418 2 RPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIA 81 (384)
T ss_pred cCCCCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 467778 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecC----ceeecCCCCCCcccccCcccccccC--CCc-
Q 008191 169 EFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDG----DVYFSVDKFPEYGQLSGRKLEDNRA--GER- 241 (574)
Q Consensus 169 ~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~----~v~f~~~~~~~yg~Ls~~~~~~~~~--g~~- 241 (574)
+|.++|++|||.+++.+||+|+|++.|+++|++|+++|+||++++ +|||++++++.||+||+++++++.. +.+
T Consensus 82 ~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~ 161 (384)
T PRK12418 82 LFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERG 161 (384)
T ss_pred HHHHHHHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccc
Confidence 999999999998899999999999999999999999999999988 8999999999999999999888765 555
Q ss_pred cccC-CCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccC
Q 008191 242 VAVD-SRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACN 320 (574)
Q Consensus 242 v~~~-~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~ 320 (574)
++.+ +.|+||.||+|||.+++|+|.|++|||.||||||||||+|+.++||.++|||+||.||+||||+||+||++|+.+
T Consensus 162 ~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g 241 (384)
T PRK12418 162 GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATG 241 (384)
T ss_pred cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcC
Confidence 4553 359999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C-CCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 008191 321 N-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHD 398 (574)
Q Consensus 321 ~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~ 398 (574)
+ +|+++|||+|+|.++|+|||||+||+|++.++++. ++++++|||+++++|+++++|+++.+.++.+.+.++++++..
T Consensus 242 ~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~ 321 (384)
T PRK12418 242 ERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAAL 321 (384)
T ss_pred CCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Confidence 6 99999999999999999999999999999999874 888899999999999999999999999999999988887653
Q ss_pred HHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhh
Q 008191 399 CEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRK 462 (574)
Q Consensus 399 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~ 462 (574)
.. . . .+.++.+.|.+||+||||++.|++.|+++++.+|.|....+
T Consensus 322 ~~------------~---~----~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 322 PA------------G---P----DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDDA 366 (384)
T ss_pred cc------------c---c----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 20 0 0 23456789999999999999999999999999999985543
No 12
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=4.4e-99 Score=754.39 Aligned_cols=299 Identities=62% Similarity=1.111 Sum_probs=259.9
Q ss_pred cccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHH
Q 008191 89 VKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCE 168 (574)
Q Consensus 89 f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~ 168 (574)
|+|.++++|+||+||||||+.+||||+|++|.+|+|+|+|+..||+|.+|+|+||+|||||++|+++|+++.+++++|++
T Consensus 1 F~p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~ 80 (300)
T PF01406_consen 1 FKPLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEE 80 (300)
T ss_dssp ---SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CcCCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeec-CceeecCCCCCCcccccCcccccccCCCccccCCC
Q 008191 169 EFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSR 247 (574)
Q Consensus 169 ~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~-~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~ 247 (574)
+|.++|++|||.+|+.+||+|+||++|+++|++|+++|+||+++ |+|||+++++++||+||+++++++..|.+++.+..
T Consensus 81 ~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~ 160 (300)
T PF01406_consen 81 EFFEDMKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYE 160 (300)
T ss_dssp HHHHHHHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TT
T ss_pred HHHHHHHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccc
Confidence 99999999999999999999999999999999999999999998 99999999999999999999999989999988888
Q ss_pred ccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEE
Q 008191 248 KKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYW 327 (574)
Q Consensus 248 k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~ 327 (574)
|+||.||+|||..+++++.|++|||.||||||||||+|+.++||.++|||+||.||+||||+||+||++|+++++|++||
T Consensus 161 K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W 240 (300)
T PF01406_consen 161 KRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYW 240 (300)
T ss_dssp SSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEE
T ss_pred cCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHH
Q 008191 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASE 387 (574)
Q Consensus 328 ~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~ 387 (574)
||+|||+++|+|||||+||+++++|++++|+++++||+||++||+++++||++.|++|.|
T Consensus 241 ~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 241 MHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp EEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999875
No 13
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-61 Score=525.94 Aligned_cols=401 Identities=23% Similarity=0.259 Sum_probs=317.0
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
++|++.|.|| |++||||++++|.+|+++||+|++|++|.|++|+|+||.||..+|+++|++|+++|++|.+.|+++++
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~ 85 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFK 85 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5666665555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCcc-------------c-
Q 008191 176 DLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYG-------------Q- 227 (574)
Q Consensus 176 ~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg-------------~- 227 (574)
.|||+ +|.|.||| +|.+.+++++++|.++|+||.+...+|||+.| |+.|| .
T Consensus 86 ~l~Is-fD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~ 164 (558)
T COG0143 86 ALNIS-FDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRT 164 (558)
T ss_pred HhCCc-ccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCc
Confidence 99996 89999998 69999999999999999999999999999986 44454 2
Q ss_pred ccCccc---ccccCCCccccC------------------CCccCccchhhcccc--------cCCC----Ccc-ccCCcC
Q 008191 228 LSGRKL---EDNRAGERVAVD------------------SRKKNPADFALWKSA--------KEGE----PFW-ESPWGP 273 (574)
Q Consensus 228 Ls~~~~---~~~~~g~~v~~~------------------~~k~~~~Df~lwk~~--------~~g~----~~w-~~~WG~ 273 (574)
+++..+ .+..+|.+.++. .++.+| ||...... +.|. +++ +..||+
T Consensus 165 ~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGi 243 (558)
T COG0143 165 LDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGI 243 (558)
T ss_pred CCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCc-cccCChHHHHHHHHHHHccCcccceecCCCCCCc
Confidence 333222 222345443221 123344 44332211 1232 455 678999
Q ss_pred cCCC--------CccchhHHHHhh--h---C--------CCce----eeeccccccCccchHHHHHHhhccCCCCceEEE
Q 008191 274 GRPG--------WHIECSAMSAAY--L---G--------HSFD----IHGGGMDLVFPHHENEIAQSCAACNNSHISYWI 328 (574)
Q Consensus 274 g~Pg--------Whiecsam~~~~--l---G--------~~~d----ih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~ 328 (574)
++|| |+.+...|+... + | ++-+ +|++||||++||+++||||+++++.+.|.++..
T Consensus 244 pvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~a 323 (558)
T COG0143 244 PVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFA 323 (558)
T ss_pred cCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCCEEEe
Confidence 9997 988876665421 1 1 1233 999999999999999999999999998888855
Q ss_pred EeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Q 008191 329 HNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSL 405 (574)
Q Consensus 329 h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~ 405 (574)
|||++++|+|||||+||+|++.++++.|++|++||||++. +..+|.+||++.+.+..|. .+.+-|.+.+....+.+
T Consensus 324 -hg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k 402 (558)
T COG0143 324 -HGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINK 402 (558)
T ss_pred -eeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999997 9999999999999999874 22344444444444444
Q ss_pred hhhhh----c--CCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchh-----hhhHH-HH
Q 008191 406 LDAAA----L--KDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ-----AMRLE-SL 473 (574)
Q Consensus 406 ~~~~~----~--~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~-----~~~~~-~l 473 (574)
+.++. . ..+.+.+++..+.+..+.+.++| +.+.+++|+..+++|+..+|+|++..++|.- .+++. ++
T Consensus 403 ~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl 481 (558)
T COG0143 403 YFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEEIMALASRANKYIDEQAPWKLAKEDKRERLATVL 481 (558)
T ss_pred ccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhccCcHHHHHHHH
Confidence 32211 0 01345678888899999999999 9999999999999999999999999987631 23433 34
Q ss_pred HHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 474 AALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 474 ~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
..+++.++.+..+| ++||.++++++.+|+
T Consensus 482 ~~~~~~~r~la~ll~P~mP~~a~ki~~~L~ 511 (558)
T COG0143 482 YLALELVRVLAILLYPFMPETAEKIWDQLG 511 (558)
T ss_pred HHHHHHHHHHHHHhcCcCcchHHHHHHHhC
Confidence 55555666555555 899999999998875
No 14
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=7.6e-64 Score=488.19 Aligned_cols=213 Identities=60% Similarity=1.028 Sum_probs=209.4
Q ss_pred eeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcC
Q 008191 77 WLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELG 156 (574)
Q Consensus 77 ~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g 156 (574)
+||||+||++++|+|..++++++|+|||||||++||||+|++|.+|+++||+|++|++|.|++|+||||+||+.+|+++|
T Consensus 1 ~~~~t~~~~~~~~~p~~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g 80 (213)
T cd00672 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEG 80 (213)
T ss_pred CcccCCCCceeeeecCCCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccc
Q 008191 157 EDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDN 236 (574)
Q Consensus 157 ~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~ 236 (574)
++|++++++|.++|+++|++|||.+||.++|+
T Consensus 81 ~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt------------------------------------------------ 112 (213)
T cd00672 81 LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV------------------------------------------------ 112 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee------------------------------------------------
Confidence 99999999999999999999999988999998
Q ss_pred cCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHh
Q 008191 237 RAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316 (574)
Q Consensus 237 ~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~ 316 (574)
|||||++|+.++||.++|||++|+||+||||+|++||+.
T Consensus 113 -----------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 113 -----------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred -----------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred hccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCC
Q 008191 317 AACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYS 378 (574)
Q Consensus 317 a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs 378 (574)
|+.+++++++|+|+|+|.++|+|||||+||+|+++|++++|++|++|||+++++|+++++|+
T Consensus 152 a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 152 AATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 99888999999999999999999999999999999999999999999999999999999996
No 15
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-61 Score=534.35 Aligned_cols=394 Identities=23% Similarity=0.261 Sum_probs=306.7
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
+..|.+++|||||.+||||+|++|.+|+++||+|++|++|.|++|+||||+||+.+|+++|+++.++|++|.++|.++|+
T Consensus 2 ~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 81 (511)
T PRK11893 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWE 81 (511)
T ss_pred CEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCC---------------CCCccc-----------
Q 008191 176 DLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDK---------------FPEYGQ----------- 227 (574)
Q Consensus 176 ~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~---------------~~~yg~----------- 227 (574)
+|||. +|.++++++ |++.|++++++|.++|++|++.+++|||+.| |..||.
T Consensus 82 ~l~I~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f 160 (511)
T PRK11893 82 ALNIS-YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYF 160 (511)
T ss_pred HhCCC-cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEE
Confidence 99997 788888885 9999999999999999999999999999987 222332
Q ss_pred --ccC--cccccccCC--CccccCC--------CccCccchhhcccccCCCCccccCCcCcCCC--------Ccc-----
Q 008191 228 --LSG--RKLEDNRAG--ERVAVDS--------RKKNPADFALWKSAKEGEPFWESPWGPGRPG--------WHI----- 280 (574)
Q Consensus 228 --Ls~--~~~~~~~~g--~~v~~~~--------~k~~~~Df~lwk~~~~g~~~w~~~WG~g~Pg--------Whi----- 280 (574)
++. ..+.+...+ ..+..+. .+++..||++|+. +..||++.|+ |+.
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~--------~~~WGipiP~~~~~~~~vWfda~~~y 232 (511)
T PRK11893 161 FRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRT--------NFDWGIPVPGDPKHVIYVWFDALTNY 232 (511)
T ss_pred EEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCC--------CCCCCccCCCCCCceEEEEecCcHHH
Confidence 110 000000000 0111111 0223446655551 3458887776 543
Q ss_pred --------chhHH---HHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceee
Q 008191 281 --------ECSAM---SAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFT 349 (574)
Q Consensus 281 --------ecsam---~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~ 349 (574)
+|++| ...++ +.|+|++|+|++||||++++||+.+++.+.| +.|+|||||+++|+|||||+||+|+
T Consensus 233 ~s~~~~p~~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~~G~KMSKS~GN~i~ 309 (511)
T PRK11893 233 LTALGYPDDEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTLDGEKMSKSLGNVID 309 (511)
T ss_pred HhHhccccccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEECCeeecccCCcEEc
Confidence 34433 12223 6799999999999999999999999865555 7789999999999999999999999
Q ss_pred hhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH-H-HHHHHHHHHHHHHHhhhhh-----hhcCCCCChhHHH
Q 008191 350 IRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASER-I-FYIYQTLHDCEKALSLLDA-----AALKDSIPPDTVT 421 (574)
Q Consensus 350 ~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~-l-~~l~~~l~~~~~~l~~~~~-----~~~~~~~~~~l~~ 421 (574)
+.|++++||+|++||||++. +++++++|+++.+..+.+. + ..+.+.+.++...+..... .......+.+++.
T Consensus 310 ~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 389 (511)
T PRK11893 310 PFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLE 389 (511)
T ss_pred HHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHHH
Confidence 99999999999999999997 8999999999999877653 3 2455555555444332210 0111334567888
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----hh-hhHHHHHHHHHHHHHHHhhh-ccccccHH
Q 008191 422 SINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----QA-MRLESLAALEKTIRNVLTVL-GLMSTGYS 495 (574)
Q Consensus 422 ~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~~-~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~ 495 (574)
.+.++.+.+.++| ++++++.|++.|+++++.+|.|++..+++. .. ....++..+...++.+..+| +|+|+.++
T Consensus 390 ~l~~~~~~v~~~~-~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae 468 (511)
T PRK11893 390 AAAALLERVRAAM-DNLAFDKALEAILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAA 468 (511)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHH
Confidence 8999999999999 999999999999999999999998876532 11 22334555666666666666 89999999
Q ss_pred HHHHHHH
Q 008191 496 EVLLQLR 502 (574)
Q Consensus 496 ~i~~~l~ 502 (574)
++|+.|+
T Consensus 469 ~i~~~L~ 475 (511)
T PRK11893 469 KILDQLG 475 (511)
T ss_pred HHHHHhC
Confidence 9998874
No 16
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=9.6e-59 Score=513.26 Aligned_cols=399 Identities=19% Similarity=0.173 Sum_probs=307.8
Q ss_pred EEEcCC--CCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 99 MYVCGV--TPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 99 ~y~cgp--t~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
++++.| +|+|.+||||+++++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|.++|++|.+.|.+.+++
T Consensus 71 ~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 150 (616)
T PLN02224 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKD 150 (616)
T ss_pred EEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 455544 555999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCCCccc--ccCcccccccCCCccccCC------
Q 008191 177 LHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ--LSGRKLEDNRAGERVAVDS------ 246 (574)
Q Consensus 177 L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~--Ls~~~~~~~~~g~~v~~~~------ 246 (574)
|||. +|.|+|+|+ |.+.++++|.+|.++|++|+++..+|||+.|...+-. |-.. ..+..+|..++...
T Consensus 151 l~I~-~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~-~~~~~~~~~~~~~~e~~~ff 228 (616)
T PLN02224 151 LDIA-YDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLEN-NCCPVHQMPCVARKEDNYFF 228 (616)
T ss_pred cCCC-CCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCC-CCCCCCCCcceEEecceEEE
Confidence 9995 899999985 9999999999999999999999999999986543321 1100 11223444432211
Q ss_pred ------------CccCccchhhcccc--------cCC----CCccc-cCCcCcCCC--------CccchhHHHHh-----
Q 008191 247 ------------RKKNPADFALWKSA--------KEG----EPFWE-SPWGPGRPG--------WHIECSAMSAA----- 288 (574)
Q Consensus 247 ------------~k~~~~Df~lwk~~--------~~g----~~~w~-~~WG~g~Pg--------Whiecsam~~~----- 288 (574)
+..+| +|..+... +.| .++++ .+||+++|+ |+.+...|+..
T Consensus 229 ~Ls~~~~~L~~~~~~~~-~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~ 307 (616)
T PLN02224 229 ALSKYQKPLEDILAQNP-RFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDN 307 (616)
T ss_pred EhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhcccc
Confidence 11222 22111110 112 24555 379999996 88777666541
Q ss_pred ---------hhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccCh
Q 008191 289 ---------YLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHP 359 (574)
Q Consensus 289 ---------~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~ 359 (574)
.++++.++|++|+||++||+++|+|++++++...|.++ ++||||+++|+|||||+||+|+|.|+++.||+
T Consensus 308 ~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i-~~~g~l~~eG~KMSKS~GN~i~p~e~l~~yga 386 (616)
T PLN02224 308 KQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMV-FGHGFLTKDGMKMGKSLGNTLEPFELVQKFGP 386 (616)
T ss_pred cccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCcEE-EecccEecCCccccccCCccCCHHHHHHHcCc
Confidence 12457799999999999999999999998876666666 55799999999999999999999999999999
Q ss_pred hhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhh-----cCCCCChhHHHHHHHHHHHHH
Q 008191 360 LALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAAA-----LKDSIPPDTVTSINKFHNDFL 431 (574)
Q Consensus 360 d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~ 431 (574)
|++||||++. ++.++.+|+++.+.+..|. ...+.|.+.++...+..+.... .....+.++.+.++++.+.+.
T Consensus 387 D~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~v~ 466 (616)
T PLN02224 387 DAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQ 466 (616)
T ss_pred HHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHHHHH
Confidence 9999999996 8899999999998777552 2233444444333333221111 012235678899999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----h---h-hhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 432 ASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----Q---A-MRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 432 ~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~---~-~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++| +++++++|+..++++++.+|+|++..++|. . . .....+..+.+.|+.+..+| +|+|+.++++|++|+
T Consensus 467 ~~m-e~~~~~~Al~~i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg 545 (616)
T PLN02224 467 TNY-ENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLG 545 (616)
T ss_pred HHH-HhccHHHHHHHHHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhC
Confidence 999 999999999999999999999999887652 1 1 12334555667777777776 999999999999874
No 17
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-57 Score=513.13 Aligned_cols=399 Identities=20% Similarity=0.233 Sum_probs=313.2
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
++|+|+|.|| |++||||+|+++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|++++++|.+.|+++|+
T Consensus 5 ~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~ 84 (648)
T PRK12267 5 TFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWK 84 (648)
T ss_pred CEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4677777666 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCCCccc--ccCcccccccCCCccccC------
Q 008191 176 DLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ--LSGRKLEDNRAGERVAVD------ 245 (574)
Q Consensus 176 ~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~--Ls~~~~~~~~~g~~v~~~------ 245 (574)
+|||. +|.|.|+|+ |.+.+++++++|.++|++|+++..++||+.|...+.. +.. ...+..+|..++..
T Consensus 85 ~lgI~-~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~-~~~c~~cg~~~e~~~~~~~f 162 (648)
T PRK12267 85 KLDIS-YDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVD-GGKCPDCGREVELVKEESYF 162 (648)
T ss_pred HcCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhcc-CCcCCCCCCcCeEEecceEE
Confidence 99996 799999985 9999999999999999999999999999886544332 110 01233455543221
Q ss_pred ------------CCccCccch----------h-hcccc--cCCCCccc-cCCcCcCCC--------CccchhHHHHhhhC
Q 008191 246 ------------SRKKNPADF----------A-LWKSA--KEGEPFWE-SPWGPGRPG--------WHIECSAMSAAYLG 291 (574)
Q Consensus 246 ------------~~k~~~~Df----------~-lwk~~--~~g~~~w~-~~WG~g~Pg--------Whiecsam~~~~lG 291 (574)
..+++| +| . -|-.. .+-.++++ .+||++.|+ |+....++... +|
T Consensus 163 ~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~-~~ 240 (648)
T PRK12267 163 FRMSKYQDRLLEYYEENP-DFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITA-LG 240 (648)
T ss_pred EEcHHHHHHHHHHHhhCC-cccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHH-cC
Confidence 112232 22 1 23221 11123444 479999996 88776665432 12
Q ss_pred ------------CCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccCh
Q 008191 292 ------------HSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHP 359 (574)
Q Consensus 292 ------------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~ 359 (574)
++.|+|++|+|+++||..+|+|++++++..+|.++.+ ||||+++|+|||||+||+|+|.|+++.||+
T Consensus 241 ~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~-hg~l~~eg~KMSKS~GN~i~p~d~l~~yga 319 (648)
T PRK12267 241 YGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFA-HGWWLMKDGKMSKSKGNVVDPEELVDRYGL 319 (648)
T ss_pred CCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEe-cceEEECCceecccCCcccCHHHHHHHcCC
Confidence 2568999999999999999999999998778888855 699999999999999999999999999999
Q ss_pred hhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhh-----hcCCCCChhHHHHHHHHHHHHH
Q 008191 360 LALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAA-----ALKDSIPPDTVTSINKFHNDFL 431 (574)
Q Consensus 360 d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~ 431 (574)
|++||||++. ++.+|.+|+++.+.+..|. .+.+.|.+.++...+.++... ......+.++++.++++.+.+.
T Consensus 320 D~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~~v~ 399 (648)
T PRK12267 320 DALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYE 399 (648)
T ss_pred cHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999986 8999999999999877653 234445544444433332111 1123457889999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchh------hhhH-HHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 432 ASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ------AMRL-ESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 432 ~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~------~~~~-~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++| ++++++.|+..++++++.+|+|++..++|.. ..++ ..+..+...++.+..+| +|+|+.+++++++|+
T Consensus 400 ~~~-e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg 477 (648)
T PRK12267 400 ELM-EELQFSRALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLG 477 (648)
T ss_pred HHH-HhhhHHHHHHHHHHHHHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcC
Confidence 999 8999999999999999999999998876521 1122 34455566666666666 899999999998876
No 18
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6e-57 Score=510.23 Aligned_cols=395 Identities=17% Similarity=0.197 Sum_probs=307.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|||.+||||+|+++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|++++++|.+.|+++|++|||. +
T Consensus 10 ~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~-~ 88 (673)
T PRK00133 10 LPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGFGIS-F 88 (673)
T ss_pred CCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC-C
Confidence 356779999999999999999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred CCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCcccc--------------cCcccc
Q 008191 183 SVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYGQL--------------SGRKLE 234 (574)
Q Consensus 183 d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg~L--------------s~~~~~ 234 (574)
|.++|++ +|++.++++|++|+++|++|++++.+|||+.| ||.||.. .+..+.
T Consensus 89 d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~ 168 (673)
T PRK00133 89 DNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELI 168 (673)
T ss_pred CCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhc
Confidence 8899998 69999999999999999999999999999886 4444432 111111
Q ss_pred ---cccCCCccccCC------------------CccCccch--------hhcccccCCC----CccccCC-cCcCCC---
Q 008191 235 ---DNRAGERVAVDS------------------RKKNPADF--------ALWKSAKEGE----PFWESPW-GPGRPG--- 277 (574)
Q Consensus 235 ---~~~~g~~v~~~~------------------~k~~~~Df--------~lwk~~~~g~----~~w~~~W-G~g~Pg--- 277 (574)
+..+|..+++.. +.+++ .+ .-|- +.+. ++++..| |++.||
T Consensus 169 ~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l--~~~l~d~~ISR~~~W~GipvP~~~~ 245 (673)
T PRK00133 169 NPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-ELQPNVANKMKEWL--EEGLQDWDISRDAPYFGFEIPGAPG 245 (673)
T ss_pred CCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH--hCCCcccceeeeCCccceECCCCCC
Confidence 112344433211 01111 00 0011 1122 3445679 999996
Q ss_pred -----CccchhHHHHh---------------hhC-C--CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE
Q 008191 278 -----WHIECSAMSAA---------------YLG-H--SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT 334 (574)
Q Consensus 278 -----Whiecsam~~~---------------~lG-~--~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~ 334 (574)
|+.+...|+.. +|. . ...+|++|+||++||.++|||++++.+..+|.++.+ ||||+
T Consensus 246 ~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP~~v~~-hg~v~ 324 (673)
T PRK00133 246 KVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFA-HGFLT 324 (673)
T ss_pred eEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCCCEEee-eccEE
Confidence 87765544321 120 0 123999999999999999999999988777777754 69999
Q ss_pred eCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCC-CCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhh-
Q 008191 335 IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYR-SPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAA- 409 (574)
Q Consensus 335 ~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~-~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~- 409 (574)
++|+|||||+||+|+|.|+++.||+|++||||++. +.. ++.+|+++.+....+. +.+++|.+.++...+.+....
T Consensus 325 ~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~ 404 (673)
T PRK00133 325 VEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGK 404 (673)
T ss_pred ecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999986 777 8999999998765543 345666666655544332211
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----h-hhhHHHHHHHHHHHHHHH
Q 008191 410 ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----Q-AMRLESLAALEKTIRNVL 484 (574)
Q Consensus 410 ~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~-~~~~~~l~~~~~~l~~~l 484 (574)
......+.+++..++++.+.+.++| ++|+++.|+..++++++.+|+|++..++|. . ......+..+...++.++
T Consensus 405 ~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~ 483 (673)
T PRK00133 405 LPDALADPELLEEFEAAAEKIAEAY-EAREFRKALREIMALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALA 483 (673)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 1123457899999999999999999 899999999999999999999999888652 1 122344556666777777
Q ss_pred hhh-ccccccHHHHHHHHHH
Q 008191 485 TVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 485 ~iL-Gi~p~~~~~i~~~l~~ 503 (574)
.+| +|+|+.++++|+.|+.
T Consensus 484 ~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 484 IYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred HHhhChhchHHHHHHHHhCC
Confidence 777 8999999999998863
No 19
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=2.4e-56 Score=494.86 Aligned_cols=400 Identities=21% Similarity=0.214 Sum_probs=308.0
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
|.+++|+|+|.+||||+|+++.+|+++||+|++|++|.+++|+||||+||+.+|+++|++|+++++.|.+.|+++|++||
T Consensus 3 it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 82 (530)
T TIGR00398 3 ITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLN 82 (530)
T ss_pred EecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 55667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCcccc--------------cC
Q 008191 179 CLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYGQL--------------SG 230 (574)
Q Consensus 179 I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg~L--------------s~ 230 (574)
|. +|.++|+++ |++.+++++++|.++|++|++++.+|||+.+ |+.||.- ..
T Consensus 83 I~-~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~ 161 (530)
T TIGR00398 83 IS-FDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEP 161 (530)
T ss_pred CC-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCH
Confidence 97 788998885 9999999999999999999999999999875 3444421 00
Q ss_pred ccc---ccccCCCccccCC------------------CccCccchhhcccc---------cCCC----CccccC-CcCcC
Q 008191 231 RKL---EDNRAGERVAVDS------------------RKKNPADFALWKSA---------KEGE----PFWESP-WGPGR 275 (574)
Q Consensus 231 ~~~---~~~~~g~~v~~~~------------------~k~~~~Df~lwk~~---------~~g~----~~w~~~-WG~g~ 275 (574)
.++ .+.++|+.++... .+.++ ++..|... ..+. ++++.. ||++.
T Consensus 162 ~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipv 240 (530)
T TIGR00398 162 TELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPV 240 (530)
T ss_pred HHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeC
Confidence 001 1112444433210 11111 12112110 0112 344566 99999
Q ss_pred CCC--------ccchhHHHHh--h-hC--------CCce-----eeeccccccCccchHHHHHHhhccCCCCceEEEEee
Q 008191 276 PGW--------HIECSAMSAA--Y-LG--------HSFD-----IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNG 331 (574)
Q Consensus 276 PgW--------hiecsam~~~--~-lG--------~~~d-----ih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g 331 (574)
|+| +.....+... + -| ++.+ +|++|+||+++|+.+|+|+++|++.++|.++ ++||
T Consensus 241 P~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~-~~~g 319 (530)
T TIGR00398 241 PNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQV-FSHG 319 (530)
T ss_pred CCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEE-Eeec
Confidence 974 4433333321 0 01 2344 9999999999999999999999987677766 5679
Q ss_pred EEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhh
Q 008191 332 FVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASE--RIFYIYQTLHDCEKALSLLDA 408 (574)
Q Consensus 332 ~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~--~l~~l~~~l~~~~~~l~~~~~ 408 (574)
||+++|+|||||+||+|+|.|++++||+|++|||+++. ++.++++|+++.+.+..| .+.++++++.++...+..+..
T Consensus 320 ~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~ 399 (530)
T TIGR00398 320 YLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFN 399 (530)
T ss_pred cEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999996 789999999999988754 245667776666554443211
Q ss_pred h-----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----hhhhHHHHHHHHHH
Q 008191 409 A-----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----QAMRLESLAALEKT 479 (574)
Q Consensus 409 ~-----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~~~~~~~l~~~~~~ 479 (574)
. ......+.++++.++++.+.+.++| ++++++.|++++++|++.+|+|++..+++. ...+...+..+..+
T Consensus 400 ~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~l~~~ 478 (530)
T TIGR00398 400 GVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALREIMKLADRGNKYIDENKPWELFKQSPRLKELLAVCSML 478 (530)
T ss_pred CcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCChHHHHHHHHHHHHH
Confidence 0 1122457889999999999999999 999999999999999999999999887542 11223344555566
Q ss_pred HHHHHhhh-ccccccHHHHHHHHH
Q 008191 480 IRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 480 l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++.++.+| +|+|+.++++|+.|+
T Consensus 479 l~~l~~ll~P~~P~~ae~i~~~L~ 502 (530)
T TIGR00398 479 IRVLSILLYPIMPKLSEKILKFLN 502 (530)
T ss_pred HHHHHHHHhCcccHHHHHHHHHhC
Confidence 66666666 899999999998873
No 20
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=5.5e-56 Score=504.61 Aligned_cols=404 Identities=14% Similarity=0.130 Sum_probs=311.8
Q ss_pred ceeEEEcCCCCC--CcCcchhhH-HHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPY--DLSHIGHAR-VYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 96 ~v~~y~cgpt~y--g~~HiGHar-~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
+-++|++.|.|| |++||||++ ++|.+|+++||+|++|++|.|++|+|+||.+|..+|+++|++|++++++|.+.|.+
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~ 95 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKE 95 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 335677765555 999999999 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCC--ccc---------
Q 008191 173 DMVDLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPE--YGQ--------- 227 (574)
Q Consensus 173 ~l~~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~--yg~--------- 227 (574)
++++|||. +|.|.|++ +|.+.++++|++|.++|++|++...++||+.| ||. ||.
T Consensus 96 ~~~~l~i~-~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce 174 (801)
T PLN02610 96 VYDWFDIS-FDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCE 174 (801)
T ss_pred HHHHcCCc-cccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhh
Confidence 99999997 78999998 69999999999999999999999999999886 444 432
Q ss_pred -----ccCccccc---ccCCCccccCC------------------CccCc------cc---hh-hcccc--cCCCCcccc
Q 008191 228 -----LSGRKLED---NRAGERVAVDS------------------RKKNP------AD---FA-LWKSA--KEGEPFWES 269 (574)
Q Consensus 228 -----Ls~~~~~~---~~~g~~v~~~~------------------~k~~~------~D---f~-lwk~~--~~g~~~w~~ 269 (574)
+...++.+ ..+|..++... ++.++ .. .. -|-.. ++-.++++.
T Consensus 175 ~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~ 254 (801)
T PLN02610 175 KCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDL 254 (801)
T ss_pred hccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeec
Confidence 11111111 22344432211 01110 00 00 02111 111245678
Q ss_pred CCcCcCCC----------CccchhHHHHh----------hhCCCce---eeeccccccCccchHHHHHHhhccCC--CCc
Q 008191 270 PWGPGRPG----------WHIECSAMSAA----------YLGHSFD---IHGGGMDLVFPHHENEIAQSCAACNN--SHI 324 (574)
Q Consensus 270 ~WG~g~Pg----------Whiecsam~~~----------~lG~~~d---ih~~G~Dl~fpH~~~~~A~~~a~~~~--~~~ 324 (574)
+||+++|. |+.+..+|+.. +|..+-+ +|++|+||++||+++|||+++|++.+ .|.
T Consensus 255 ~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~ 334 (801)
T PLN02610 255 KWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMK 334 (801)
T ss_pred CCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCCCC
Confidence 99999982 88777666442 2322224 89999999999999999999999864 566
Q ss_pred eEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHH
Q 008191 325 SYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQTLHDCE 400 (574)
Q Consensus 325 ~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~ 400 (574)
++ +.|||++++|+|||||+||+|++.++++. ||+|++||||++. +..+|.+||++.|.+..|. .+.+.|.+.|+.
T Consensus 335 ~i-~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~ 413 (801)
T PLN02610 335 TI-SVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVL 413 (801)
T ss_pred EE-EeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 55799999999999999999999999995 9999999999997 8999999999999999775 334555555554
Q ss_pred HHHh----hhhhhh-------cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----
Q 008191 401 KALS----LLDAAA-------LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK---- 465 (574)
Q Consensus 401 ~~l~----~~~~~~-------~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~---- 465 (574)
..+. ++.... ...+.+.++++.+.++.+.+.++| ++++++.|+..++++++.+|+|++..++|.
T Consensus 414 ~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~Al~~I~~l~~~~NkYIe~~kPW~L~k~ 492 (801)
T PLN02610 414 SFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKE 492 (801)
T ss_pred HHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhcCchhhhCC
Confidence 4443 121111 012235788899999999999999 999999999999999999999999988753
Q ss_pred hh-hhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 466 QA-MRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 466 ~~-~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.. ....++..+.+.++.+..+| +|||+.+++++++|+
T Consensus 493 d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg 531 (801)
T PLN02610 493 DKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLN 531 (801)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhC
Confidence 11 22334556667777777777 999999999999886
No 21
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-57 Score=454.70 Aligned_cols=400 Identities=23% Similarity=0.229 Sum_probs=313.5
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
..+++.|..| ..|||||+++.+++|+++|+.+.+|..|+|.+|+|+||.||...|+.+|..|.++||+..++|.+.++
T Consensus 40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k 119 (578)
T KOG0436|consen 40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWK 119 (578)
T ss_pred eeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHH
Confidence 5677788777 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCccc--cc-----CcccccccCCCcccc--
Q 008191 176 DLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ--LS-----GRKLEDNRAGERVAV-- 244 (574)
Q Consensus 176 ~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~--Ls-----~~~~~~~~~g~~v~~-- 244 (574)
.+||. .+.|.|+| .|+..+++++..+.++|++|..++.+|||++++..|.+ +. ......|+.|..|..
T Consensus 120 ~~gi~-yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k 198 (578)
T KOG0436|consen 120 DAGIA-YTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK 198 (578)
T ss_pred HhCcc-hhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec
Confidence 99996 89999999 59999999999999999999999999999998777654 11 012334555655422
Q ss_pred ----------------CCCccCccchhhcccc--------cCCC----Ccc---ccCCcCcCCC--------CccchhHH
Q 008191 245 ----------------DSRKKNPADFALWKSA--------KEGE----PFW---ESPWGPGRPG--------WHIECSAM 285 (574)
Q Consensus 245 ----------------~~~k~~~~Df~lwk~~--------~~g~----~~w---~~~WG~g~Pg--------Whiecsam 285 (574)
+...+|| +|+..... +.|. +++ ...||++.|| |+++...|
T Consensus 199 E~NY~FrLSkfqk~l~d~lrkNP-~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nY 277 (578)
T KOG0436|consen 199 EDNYFFRLSKFQKPLEDHLRKNP-RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNY 277 (578)
T ss_pred ccceeeeHHhhhhHHHHHHhcCC-CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhH
Confidence 1234566 55432211 1122 223 2479999998 98877666
Q ss_pred HHhh--------------hCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehh
Q 008191 286 SAAY--------------LGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIR 351 (574)
Q Consensus 286 ~~~~--------------lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~ 351 (574)
+... +|+|..+|++|+|++.||++||||+++|++.++|..+++| ||++.+|.|||||+||||+|.
T Consensus 278 iSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~vH-ghwt~ngmKMsKSLGNvvdP~ 356 (578)
T KOG0436|consen 278 ISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFVH-GHWTKNGMKMSKSLGNVVDPF 356 (578)
T ss_pred HHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEEe-eeeeecceecchhhccccCHH
Confidence 5431 5678899999999999999999999999999999988775 999999999999999999999
Q ss_pred hhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhh-----hhcCCCCChhHH
Q 008191 352 QVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASE-----RIFYIYQTLHDCEKALSLLDA-----AALKDSIPPDTV 420 (574)
Q Consensus 352 d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~-----~l~~l~~~l~~~~~~l~~~~~-----~~~~~~~~~~l~ 420 (574)
+++++||+|++|||||+. ....|.||+++.+....| .+++|.|+...-.-...+... ..........+.
T Consensus 357 ~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv 436 (578)
T KOG0436|consen 357 ELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLV 436 (578)
T ss_pred HHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHH
Confidence 999999999999999997 889999999999988775 355555544221111111000 001112235678
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----hhhhHHHHHHHHHHHHHHHhhh-----cccc
Q 008191 421 TSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----QAMRLESLAALEKTIRNVLTVL-----GLMS 491 (574)
Q Consensus 421 ~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~~~~~~~l~~~~~~l~~~l~iL-----Gi~p 491 (574)
..+.++++.+.+.+ |+|..+.|+.++++.+++.|.|++..++|+ .+.....+..++..+.++++|+ +|+|
T Consensus 437 ~~v~kl~ev~a~~~-d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~P 515 (578)
T KOG0436|consen 437 DTVEKLPEVAATNY-DNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAP 515 (578)
T ss_pred HHHHHhHHHHHhhc-ccccHHHHHHHHHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 88999999999999 999999999999999999999999988763 2333444444445544555554 4666
Q ss_pred ccHHHHHHHH
Q 008191 492 TGYSEVLLQL 501 (574)
Q Consensus 492 ~~~~~i~~~l 501 (574)
..+.+++.++
T Consensus 516 sls~~llsql 525 (578)
T KOG0436|consen 516 SLSLRLLSQL 525 (578)
T ss_pred hhHHHHHHHc
Confidence 6655555554
No 22
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.8e-55 Score=486.46 Aligned_cols=401 Identities=16% Similarity=0.180 Sum_probs=301.6
Q ss_pred EEEcC--CCCCCcCcchhhHHH-HHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 99 MYVCG--VTPYDLSHIGHARVY-VTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 99 ~y~cg--pt~yg~~HiGHar~~-v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
+|+|+ |+|||.+||||++++ |.+|+++||+|++|++|.|++|+||||+||+.+|+++|++++++|++|.+.|.++|+
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 84 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFK 84 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45555 555599999999987 999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCcc------cc-------
Q 008191 176 DLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYG------QL------- 228 (574)
Q Consensus 176 ~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg------~L------- 228 (574)
+|||. +|.++|++ +|++.+++++++|+++|++|++++.+|||+.| |+.|| ..
T Consensus 85 ~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~ 163 (556)
T PRK12268 85 KLGIS-YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGAL 163 (556)
T ss_pred HcCCc-CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhcccc
Confidence 99996 79999999 89999999999999999999999999999875 33333 10
Q ss_pred -cCccc---ccccCCCccccCC----------CccC-----------cc----chhhccc--ccCCCCccccCCcCcCC-
Q 008191 229 -SGRKL---EDNRAGERVAVDS----------RKKN-----------PA----DFALWKS--AKEGEPFWESPWGPGRP- 276 (574)
Q Consensus 229 -s~~~~---~~~~~g~~v~~~~----------~k~~-----------~~----Df~lwk~--~~~g~~~w~~~WG~g~P- 276 (574)
....+ .+.++|+.++... .++- |. .+.-|-. .++-.+++...||++.|
T Consensus 164 ~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~ 243 (556)
T PRK12268 164 LDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPW 243 (556)
T ss_pred CChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCC
Confidence 00001 1112333322110 0000 00 0001111 00111334467999999
Q ss_pred -C--------CccchhHHHH----------------hhh--CCCceeeeccccccCccchHHHHHHhhcc--CCCCceEE
Q 008191 277 -G--------WHIECSAMSA----------------AYL--GHSFDIHGGGMDLVFPHHENEIAQSCAAC--NNSHISYW 327 (574)
Q Consensus 277 -g--------Whiecsam~~----------------~~l--G~~~dih~~G~Dl~fpH~~~~~A~~~a~~--~~~~~~~~ 327 (574)
+ |+.....+.. .+| ..+.++|+.|+|+++||..++++++.+.+ .+.|.++
T Consensus 244 ~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v- 322 (556)
T PRK12268 244 PGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEI- 322 (556)
T ss_pred CCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEe-
Confidence 3 4433322211 122 11446999999999999999999999987 5555566
Q ss_pred EEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHh
Q 008191 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQTLHDCEKALS 404 (574)
Q Consensus 328 ~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~ 404 (574)
++||||+++|+|||||+||+|+|.|++++||+|++|||+++. +..++++|+++.+....+. +..++|.+.++...+.
T Consensus 323 ~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~ 402 (556)
T PRK12268 323 VSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIE 402 (556)
T ss_pred eccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHH
Confidence 668999999999999999999999999999999999999986 7889999999998765432 3345555555444433
Q ss_pred hhhh----hhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch-----hhhhHHHHHH
Q 008191 405 LLDA----AALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK-----QAMRLESLAA 475 (574)
Q Consensus 405 ~~~~----~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~-----~~~~~~~l~~ 475 (574)
.... .......+.+++..++++.+.+.++| ++|+++.|++.+++|++.+|+|++..+++. .......+..
T Consensus 403 ~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~l~~ 481 (556)
T PRK12268 403 KYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRERAATVLYT 481 (556)
T ss_pred HhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHH
Confidence 3211 11234567899999999999999999 999999999999999999999998776542 1122234455
Q ss_pred HHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 476 LEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 476 ~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+..+++.++.+| +|+|+.++++|+.|+
T Consensus 482 ~~~~l~~~~~lL~P~~P~~aeei~~~Lg 509 (556)
T PRK12268 482 ALNLVRLLAVLLYPFLPFSAQKIWEMLG 509 (556)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHhC
Confidence 566777777777 999999999998874
No 23
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=6.6e-53 Score=437.44 Aligned_cols=269 Identities=23% Similarity=0.284 Sum_probs=229.0
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCC-------------ChHHHH
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGE-------------DPISLS 163 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~-------------~~~e~a 163 (574)
..+...+|||||.+||||+|+++.+|+++||+|++|++|.+++|+|+||++|+.+|++.+. +++++|
T Consensus 2 ~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
T cd00668 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFV 81 (312)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHH
Confidence 3466778999999999999999999999999999999999999999999999999999988 899999
Q ss_pred HHHHHHHHHHHHhcCCCCCC--Cccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCC
Q 008191 164 RRYCEEFHQDMVDLHCLPPS--VEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAG 239 (574)
Q Consensus 164 ~~~~~~f~~~l~~L~I~~~d--~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g 239 (574)
++|.++|+++|++|||. .| .+.+++ +|++.++++|++|.++|++|++.+.+++...-+..+++++.+.++.+..+
T Consensus 82 ~~~~~~~~~~l~~lgI~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~ 160 (312)
T cd00668 82 EEMSGEHKEDFRRLGIS-YDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRG 160 (312)
T ss_pred HHHHHHHHHHHHHhCcc-ccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcC
Confidence 99999999999999997 44 333443 79999999999999999999999999888887778888876655555444
Q ss_pred CccccCCCc-------cCccchhhcccccCCCCccccCCcCcCCCCccch----hH---HHHhhhCC--------Cceee
Q 008191 240 ERVAVDSRK-------KNPADFALWKSAKEGEPFWESPWGPGRPGWHIEC----SA---MSAAYLGH--------SFDIH 297 (574)
Q Consensus 240 ~~v~~~~~k-------~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiec----sa---m~~~~lG~--------~~dih 297 (574)
. +..+..+ +++.||+++ |+++||+++||||++| +. ++..+++. +.|||
T Consensus 161 ~-~~p~~~~~~~~~~l~~~~d~~is---------R~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~ 230 (312)
T cd00668 161 K-IVPEHVKNRMEAWLESLLDWAIS---------RQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWH 230 (312)
T ss_pred C-cCChHHHHHHHHHHhCCCCeEEe---------ccCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEE
Confidence 3 2222223 234465553 4679999999999999 43 22233332 68999
Q ss_pred eccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCC-cccccccCceeehhhhhhccChhhHHHHhhcc-CCCCC
Q 008191 298 GGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDS-EKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSP 374 (574)
Q Consensus 298 ~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G-~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~ 374 (574)
++|+|++||||++++|++.++++. ++.++|+| |||+++| +|||||+||+|+++|++++|++|++|||+++. ++++|
T Consensus 231 ~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d 309 (312)
T cd00668 231 LIGKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDD 309 (312)
T ss_pred EEecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCC
Confidence 999999999999999999999877 88999987 9999987 99999999999999999999999999999997 68999
Q ss_pred CCC
Q 008191 375 INY 377 (574)
Q Consensus 375 ~~f 377 (574)
.+|
T Consensus 310 ~~~ 312 (312)
T cd00668 310 IRL 312 (312)
T ss_pred CCC
Confidence 887
No 24
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=2.4e-50 Score=427.95 Aligned_cols=291 Identities=26% Similarity=0.341 Sum_probs=216.1
Q ss_pred EEcC--CCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008191 100 YVCG--VTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 100 y~cg--pt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
|+|+ |+|+|.|||||++++|.+|+++||+|++|++|.|++|+|+||.||..+|+++|++|++++++|.+.|++++++|
T Consensus 2 ~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~ 81 (391)
T PF09334_consen 2 YITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEAL 81 (391)
T ss_dssp EEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4454 66669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCccc--------------cc
Q 008191 178 HCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYGQ--------------LS 229 (574)
Q Consensus 178 ~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg~--------------Ls 229 (574)
||. +|.|.|++ +|.+.+++++++|.++|++|+++..+|||+++ ||.||. +.
T Consensus 82 ~I~-~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~ 160 (391)
T PF09334_consen 82 NIS-YDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLE 160 (391)
T ss_dssp T----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEE
T ss_pred CCC-CcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcc
Confidence 997 78999997 69999999999999999999999999999986 444441 11
Q ss_pred Cccccc---ccCCCccccC----------CC--------ccCccchhhcccc---------cCCC----CccccCCcCcC
Q 008191 230 GRKLED---NRAGERVAVD----------SR--------KKNPADFALWKSA---------KEGE----PFWESPWGPGR 275 (574)
Q Consensus 230 ~~~~~~---~~~g~~v~~~----------~~--------k~~~~Df~lwk~~---------~~g~----~~w~~~WG~g~ 275 (574)
...+.+ ..+|..+.+. .+ +.++ +| |... +.+. ++.+.+||++.
T Consensus 161 ~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~-~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~v 237 (391)
T PF09334_consen 161 PEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNP-DF--PPPRVREIVRNWLKEGLPDLSISRPLDWGIPV 237 (391)
T ss_dssp CCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHST-TS--SHHHHHHHHHHHHHT----EE-ECTTSSSEEE
T ss_pred cccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCC-CC--CChhHHHHHHHHhhcccCceeeecCCCCccee
Confidence 111111 1233332211 00 0011 11 1110 1111 34467899999
Q ss_pred CC--------CccchhHHHHh----------------hh---CCCceeeeccccccCccchHHHHHHhhccCCCCceEEE
Q 008191 276 PG--------WHIECSAMSAA----------------YL---GHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWI 328 (574)
Q Consensus 276 Pg--------Whiecsam~~~----------------~l---G~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~ 328 (574)
|+ |+..+.++... +| +....+|++|+||++||.++|+|+++|++.+.|.++ +
T Consensus 238 P~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i-~ 316 (391)
T PF09334_consen 238 PGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRI-V 316 (391)
T ss_dssp TTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB---SEE-E
T ss_pred eccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCCCCCEE-E
Confidence 96 87766555432 22 112349999999999999999999999888888777 5
Q ss_pred EeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH-----HHHHHHH
Q 008191 329 HNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASER-----IFYIYQT 395 (574)
Q Consensus 329 h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~-----l~~l~~~ 395 (574)
.|||++++|+|||||+||+|++.|+++.|++|++||||++. +..++.+|+++.+.+..|. ++|+.++
T Consensus 317 ~~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R 389 (391)
T PF09334_consen 317 VHGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNR 389 (391)
T ss_dssp EE--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHH
T ss_pred eeeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhc
Confidence 57999999999999999999999999999999999999996 8899999999999998874 6666654
No 25
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.4e-47 Score=438.01 Aligned_cols=403 Identities=18% Similarity=0.217 Sum_probs=298.7
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH-cCCChH------------HH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE-LGEDPI------------SL 162 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~-~g~~~~------------e~ 162 (574)
+..+...+|+|+|.+||||+++++++|+++||+|++||+|.+++|+|.||.+|+.+|++ .|++++ ++
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 34555557888899999999999999999999999999999999999999999999987 488776 69
Q ss_pred HHHHHHHHHHHHHhcCCCCCC--Cccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc----------
Q 008191 163 SRRYCEEFHQDMVDLHCLPPS--VEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL---------- 228 (574)
Q Consensus 163 a~~~~~~f~~~l~~L~I~~~d--~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L---------- 228 (574)
+++|.+.|.++|++||+. .| .+.+|+ +|...++.+|.+|.++|++|++...|+||+.+.......
T Consensus 119 ~~~~~~~~~~~~~~lg~s-~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~ 197 (800)
T PRK13208 119 TDEDEKKFRELWRRLGLS-VDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGK 197 (800)
T ss_pred HHHHHHHHHHHHHHhCee-eccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhccccccce
Confidence 999999999999999997 45 334444 699999999999999999999999999999864322110
Q ss_pred ------------------------------------------cCccc----------------ccccCCCccccCCCccC
Q 008191 229 ------------------------------------------SGRKL----------------EDNRAGERVAVDSRKKN 250 (574)
Q Consensus 229 ------------------------------------------s~~~~----------------~~~~~g~~v~~~~~k~~ 250 (574)
.+..+ .++..|+.+..-...++
T Consensus 198 ~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~hd 277 (800)
T PRK13208 198 LNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGD 277 (800)
T ss_pred EEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCCC
Confidence 00000 00001110000000011
Q ss_pred ccchhhcc------------------------------------------------------------------------
Q 008191 251 PADFALWK------------------------------------------------------------------------ 258 (574)
Q Consensus 251 ~~Df~lwk------------------------------------------------------------------------ 258 (574)
+.||.+.+
T Consensus 278 ~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~q 357 (800)
T PRK13208 278 KTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQ 357 (800)
T ss_pred HHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccce
Confidence 11221100
Q ss_pred --cc-----------------cC------------C-CCcc----ccCCcCcCCCCccc-h-------------------
Q 008191 259 --SA-----------------KE------------G-EPFW----ESPWGPGRPGWHIE-C------------------- 282 (574)
Q Consensus 259 --~~-----------------~~------------g-~~~w----~~~WG~g~PgWhie-c------------------- 282 (574)
-. .| + .+.| ...||.+.|-|+++ |
T Consensus 358 wfl~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~~d~ 437 (800)
T PRK13208 358 WFIKVLDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPTKDE 437 (800)
T ss_pred eeEeCHHHHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCchhhc
Confidence 00 00 0 0123 34699999977631 1
Q ss_pred --------------------------hH-HHHhhhC-----------CCceeeeccccccCccchHHHHHHhhccCC-CC
Q 008191 283 --------------------------SA-MSAAYLG-----------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SH 323 (574)
Q Consensus 283 --------------------------sa-m~~~~lG-----------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~ 323 (574)
|. +....+| +|.|++++|+|++++|....++++.++.+. ||
T Consensus 438 ~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf 517 (800)
T PRK13208 438 PPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPW 517 (800)
T ss_pred cccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCc
Confidence 00 0001122 367999999999999999999999988776 66
Q ss_pred ceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008191 324 ISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKA 402 (574)
Q Consensus 324 ~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~ 402 (574)
.++++ ||||+. +|+|||||+||+|+|.|++++||+|++|||++.++++++++|+++.+....+.+.+|+|+++.+..
T Consensus 518 ~~v~~-hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~- 595 (800)
T PRK13208 518 KNIMI-SGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH- 595 (800)
T ss_pred ceEEE-eeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 88866 699985 999999999999999999999999999999997799999999999999988888899988765542
Q ss_pred Hhhhh---hhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH--HHHHHHHhhhcch-----hhhhHHH
Q 008191 403 LSLLD---AAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK--TINDLLHTRKGKK-----QAMRLES 472 (574)
Q Consensus 403 l~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~--~~N~~~~~~~~~~-----~~~~~~~ 472 (574)
..... ........+++++..++.+.+.+.++| ++|+++.|++.|++++. .+|.|++..+++. ...+...
T Consensus 596 ~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~ 674 (800)
T PRK13208 596 FSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSA 674 (800)
T ss_pred cccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHH
Confidence 11100 001122346788999999999999999 89999999999999986 4899998776421 1113344
Q ss_pred HHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 473 LAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 473 l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+..+..+|+.++.+| +|+|+.++++|+.+.
T Consensus 675 ~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~ 705 (800)
T PRK13208 675 RYTLYTVLDTLLRLLAPFLPFITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhCC
Confidence 556667788888887 899999999999885
No 26
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=5.1e-48 Score=401.72 Aligned_cols=274 Identities=23% Similarity=0.293 Sum_probs=213.4
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
|.++.|+|||++||||+|+++++|+++||+|++|++|.+++|+||||+||+.+|+++|++|+++++++.+.|+++|++||
T Consensus 4 it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg 83 (319)
T cd00814 4 ITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLN 83 (319)
T ss_pred EEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 44446777799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCc-----ccccccCCCccccCCCccCc
Q 008191 179 CLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGR-----KLEDNRAGERVAVDSRKKNP 251 (574)
Q Consensus 179 I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~-----~~~~~~~g~~v~~~~~k~~~ 251 (574)
|. +|.++++++ |++.+++++++|.++|++|+++..++||+.|...+..+... ++.... +.. .+..+.++
T Consensus 84 I~-~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~--~~l-~~~~~~~~ 159 (319)
T cd00814 84 IS-FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQ--DRL-LEWLEKNP 159 (319)
T ss_pred Cc-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHH--HHH-HHHHHhCC
Confidence 96 789998875 99999999999999999999999999999875433211000 000000 000 00001111
Q ss_pred -----c----chhhcccc--cCCCCcccc-CCcCcCCC--------CccchhHHHHh--------------hhCCCceee
Q 008191 252 -----A----DFALWKSA--KEGEPFWES-PWGPGRPG--------WHIECSAMSAA--------------YLGHSFDIH 297 (574)
Q Consensus 252 -----~----Df~lwk~~--~~g~~~w~~-~WG~g~Pg--------Whiecsam~~~--------------~lG~~~dih 297 (574)
. ...-|-.. .+-..+++. .||++.|+ |+....+++.. ..+++.++|
T Consensus 160 ~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (319)
T cd00814 160 DFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVH 239 (319)
T ss_pred ccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEE
Confidence 0 11112111 011245566 89998885 76544443221 124477899
Q ss_pred eccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCC
Q 008191 298 GGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPIN 376 (574)
Q Consensus 298 ~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~ 376 (574)
++|+|+++||+++|+|++.+++.++| +.+++|||++++|+|||||+||+|++.|+++.|++|++|||+++. +..++.+
T Consensus 240 ~~G~D~~~fh~~~~pa~l~~~~~~~~-~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~ 318 (319)
T cd00814 240 FIGKDIIRFHAIYWPAMLLGAGLPLP-TRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSD 318 (319)
T ss_pred EEeechhhhhHHHHHHHHHhCCCCCC-cEeeeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCC
Confidence 99999999999999999998875544 455889999999999999999999999999999999999999996 8889988
Q ss_pred C
Q 008191 377 Y 377 (574)
Q Consensus 377 f 377 (574)
|
T Consensus 319 f 319 (319)
T cd00814 319 F 319 (319)
T ss_pred C
Confidence 7
No 27
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=6.2e-46 Score=431.50 Aligned_cols=404 Identities=19% Similarity=0.225 Sum_probs=298.1
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH----cCCCh------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE----LGEDP------------ 159 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~----~g~~~------------ 159 (574)
+..|+...|+++|.+||||++++++.|+++||.||+|++|.++.|+|.||.+|+..+++ .|+++
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~ 113 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKI 113 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHH
Confidence 45666667888899999999999999999999999999999999999999988876553 46655
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCc-cc-cc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc-------
Q 008191 160 ISLSRRYCEEFHQDMVDLHCLPPSVE-PR-VS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL------- 228 (574)
Q Consensus 160 ~e~a~~~~~~f~~~l~~L~I~~~d~~-~r-~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L------- 228 (574)
++++++|...+.++|++||+. .|+. ++ |+ .|.+.++++|.+|+++|++|++...|+||+.|.......
T Consensus 114 ~~~~~~~~~~~~~~~~~lG~s-~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~ 192 (861)
T TIGR00422 114 WEWKEESGGTIKNQIKRLGAS-LDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEV 192 (861)
T ss_pred HHHHHHHHHHHHHHHHHhCee-eecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhcccc
Confidence 578999999999999999997 4532 11 22 699999999999999999999999999998864322110
Q ss_pred -----------------------------------------------cCccc----------------ccccCCCccccC
Q 008191 229 -----------------------------------------------SGRKL----------------EDNRAGERVAVD 245 (574)
Q Consensus 229 -----------------------------------------------s~~~~----------------~~~~~g~~v~~~ 245 (574)
.|..+ .++..|+.+...
T Consensus 193 ~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~ 272 (861)
T TIGR00422 193 KGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKV 272 (861)
T ss_pred cceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCCCCcccCCCceEe
Confidence 00000 000011110000
Q ss_pred CCccCccchhh------------------------------------------------------------cc-------
Q 008191 246 SRKKNPADFAL------------------------------------------------------------WK------- 258 (574)
Q Consensus 246 ~~k~~~~Df~l------------------------------------------------------------wk------- 258 (574)
....+|.||.. |+
T Consensus 273 ~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~ 352 (861)
T TIGR00422 273 TPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEP 352 (861)
T ss_pred cCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEE
Confidence 00001111100 00
Q ss_pred --------------c-----ccCC-------------------C----CccccCCcCcCCCCccc-hhH-----------
Q 008191 259 --------------S-----AKEG-------------------E----PFWESPWGPGRPGWHIE-CSA----------- 284 (574)
Q Consensus 259 --------------~-----~~~g-------------------~----~~w~~~WG~g~PgWhie-csa----------- 284 (574)
. .+.+ . .++...||.+.|.|+++ |..
T Consensus 353 ~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~ 432 (861)
T TIGR00422 353 LLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPD 432 (861)
T ss_pred EecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhh
Confidence 0 0000 1 12235799999998742 311
Q ss_pred --------------------------HHHhhhC-----------CCceeeeccccccCccchHHHHHHhhccCC-CCceE
Q 008191 285 --------------------------MSAAYLG-----------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISY 326 (574)
Q Consensus 285 --------------------------m~~~~lG-----------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~ 326 (574)
+-...+| +|.|+|+.|+|++|+|..++++++.++.++ ||.++
T Consensus 433 ~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v 512 (861)
T TIGR00422 433 DKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEV 512 (861)
T ss_pred hhhccCCcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheE
Confidence 0001123 367899999999999999999999999776 55888
Q ss_pred EEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008191 327 WIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALS 404 (574)
Q Consensus 327 ~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~ 404 (574)
++ ||||+. +|+|||||+||+|+|.|++++||+|++|||+++. +.+++++|+++.+.+..+.+.+|+|+.+.+...+.
T Consensus 513 ~~-hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~ 591 (861)
T TIGR00422 513 YI-HGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLS 591 (861)
T ss_pred EE-eeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77 499996 8999999999999999999999999999999987 55999999999999998888899996655543322
Q ss_pred hhh--h--hhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcch----hhhhHHHHH
Q 008191 405 LLD--A--AALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGKK----QAMRLESLA 474 (574)
Q Consensus 405 ~~~--~--~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~~----~~~~~~~l~ 474 (574)
... . .......+++++..++.+.+.+.++| ++|+++.|+..|++|+ ..+|.|++..+++. ...+.....
T Consensus 592 ~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~ 670 (861)
T TIGR00422 592 DDLELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARD 670 (861)
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHHH
Confidence 110 0 01123456889999999999999999 9999999999999997 78999999877431 122334556
Q ss_pred HHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 475 ALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 475 ~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.+..+|..++.+| +|+|+.++++|+.|.
T Consensus 671 ~l~~~l~~~~~lL~Pf~P~itEelw~~L~ 699 (861)
T TIGR00422 671 TLYYVLDKALRLLHPFMPFITEEIWQHFK 699 (861)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhCc
Confidence 6677788888888 899999999999985
No 28
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-45 Score=409.00 Aligned_cols=416 Identities=19% Similarity=0.221 Sum_probs=313.0
Q ss_pred ccccccCCC---CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHH----HHHHHHcCCC
Q 008191 86 RELVKPKVE---GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKI----IARANELGED 158 (574)
Q Consensus 86 ~~~f~p~~~---~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI----~~~A~~~g~~ 158 (574)
...|.|..+ ....|.+++|+|.|.+|||||.++.+.|+|+||.||+||+|.+..|+|.+|..+ ++...++|++
T Consensus 21 ~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~ 100 (877)
T COG0525 21 SGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGIT 100 (877)
T ss_pred cCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCC
Confidence 347777643 237888899999999999999999999999999999999999999999999544 4444445654
Q ss_pred ------------hHHHHHHHHHHHHHHHHhcCCCCCCCccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC
Q 008191 159 ------------PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP 223 (574)
Q Consensus 159 ------------~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~ 223 (574)
.+|+.+++...+.+.|++||++......|-| +....+++.|-+|+++|+||..++-|.+|+.|-.
T Consensus 101 r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~T 180 (877)
T COG0525 101 RHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRT 180 (877)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCcccc
Confidence 4788999999999999999997432233334 6889999999999999999999999999987621
Q ss_pred -----------------------------------------------------CcccccCcccc----------------
Q 008191 224 -----------------------------------------------------EYGQLSGRKLE---------------- 234 (574)
Q Consensus 224 -----------------------------------------------------~yg~Ls~~~~~---------------- 234 (574)
.|-.|.|+.+.
T Consensus 181 AiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~V 260 (877)
T COG0525 181 AISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYV 260 (877)
T ss_pred chhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeecCccc
Confidence 11111111110
Q ss_pred cccCCCccccCCCccCccchhhcccc------------------------------------------------------
Q 008191 235 DNRAGERVAVDSRKKNPADFALWKSA------------------------------------------------------ 260 (574)
Q Consensus 235 ~~~~g~~v~~~~~k~~~~Df~lwk~~------------------------------------------------------ 260 (574)
++.-|+.+..-..-+++.||..||+.
T Consensus 261 D~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V 340 (877)
T COG0525 261 DPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSV 340 (877)
T ss_pred CCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccC
Confidence 00111110000012233444444320
Q ss_pred ---------------------------------cCCCC-------------------ccc----cCCcCcCCCCcc-chh
Q 008191 261 ---------------------------------KEGEP-------------------FWE----SPWGPGRPGWHI-ECS 283 (574)
Q Consensus 261 ---------------------------------~~g~~-------------------~w~----~~WG~g~PgWhi-ecs 283 (574)
+.|++ .|. .-||...|-|++ +|.
T Consensus 341 ~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g 420 (877)
T COG0525 341 GHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECG 420 (877)
T ss_pred ccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCC
Confidence 00111 111 248999999988 662
Q ss_pred HH--------------------------------HHh-----hhCC-----------CceeeeccccccCccchHHHHHH
Q 008191 284 AM--------------------------------SAA-----YLGH-----------SFDIHGGGMDLVFPHHENEIAQS 315 (574)
Q Consensus 284 am--------------------------------~~~-----~lG~-----------~~dih~~G~Dl~fpH~~~~~A~~ 315 (574)
.. ++. .+|+ |.++-+.|.||+||+..+.+.++
T Consensus 421 ~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~ 500 (877)
T COG0525 421 NVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRG 500 (877)
T ss_pred cEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHH
Confidence 11 000 1232 56788999999999999999999
Q ss_pred hhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHH
Q 008191 316 CAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYI 392 (574)
Q Consensus 316 ~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l 392 (574)
..+.++ ||..+++ ||+|.. +|+|||||+||||+|.|++++||+|+|||+++.. +.++|++|+++.++..+|...++
T Consensus 501 ~~~~~~~PFk~V~i-hGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKl 579 (877)
T COG0525 501 LHLTGEVPFKDVYI-HGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKL 579 (877)
T ss_pred HHhcCCCCccEEEE-eeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHH
Confidence 998875 8888866 599986 7999999999999999999999999999999997 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhh----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH--HHHHHHHhhhcc--
Q 008191 393 YQTLHDCEKALSLLDAA----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK--TINDLLHTRKGK-- 464 (574)
Q Consensus 393 ~~~l~~~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~--~~N~~~~~~~~~-- 464 (574)
||+.+.+...+...... ......++|++..++++.+.+.++| |+|++..|...|++|+. .|+.|++-.+..
T Consensus 580 WNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~ 658 (877)
T COG0525 580 WNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARALYEFIWNDFCDWYLELAKPRLY 658 (877)
T ss_pred HhHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhc
Confidence 99887765544322110 1113567999999999999999999 99999999999999984 578999877731
Q ss_pred -hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHH
Q 008191 465 -KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 465 -~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~ 503 (574)
....+.++...+..+|..++++| +|||+.+|++|+.+..
T Consensus 659 ~~~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~ 699 (877)
T COG0525 659 GGEEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPG 699 (877)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCC
Confidence 12234456677788899999998 9999999999998754
No 29
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-44 Score=419.68 Aligned_cols=404 Identities=19% Similarity=0.209 Sum_probs=293.8
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHH----HHHHHHHcCCChHH-----------
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPIS----------- 161 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~k----I~~~A~~~g~~~~e----------- 161 (574)
..+...+|+|+|.+||||++++++.|+++||.|++|++|.++.|+|.||.. |.+.+.+.|+++.+
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~ 117 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVW 117 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHH
Confidence 555666788889999999999999999999999999999999999999964 44555556777654
Q ss_pred -HHHHHHHHHHHHHHhcCCCCCCCc-cccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCC-------ccc--
Q 008191 162 -LSRRYCEEFHQDMVDLHCLPPSVE-PRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPE-------YGQ-- 227 (574)
Q Consensus 162 -~a~~~~~~f~~~l~~L~I~~~d~~-~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~-------yg~-- 227 (574)
++++|.+.+.++|++||+. .|+. .+.| +|...++++|.+|+++|+||++...|+||+.+... |..
T Consensus 118 ~w~~~~~~~~~~~~~~lG~s-~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~ 196 (874)
T PRK05729 118 EWKEESGGTITNQLRRLGAS-CDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVK 196 (874)
T ss_pred HHHHHHHHHHHHHHHHhCcc-eecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhccccccc
Confidence 5999999999999999997 4432 1222 68999999999999999999999999999886321 100
Q ss_pred --------------------------------------------ccCcccc----------------cccCCCccccCCC
Q 008191 228 --------------------------------------------LSGRKLE----------------DNRAGERVAVDSR 247 (574)
Q Consensus 228 --------------------------------------------Ls~~~~~----------------~~~~g~~v~~~~~ 247 (574)
|.|..+. ++..|+.+..-..
T Consensus 197 ~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~P 276 (874)
T PRK05729 197 GKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITP 276 (874)
T ss_pred ceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCccCCCCCCCcceEecC
Confidence 0000000 0001111000000
Q ss_pred ccCccchhhccc--------------------------------------------------------------------
Q 008191 248 KKNPADFALWKS-------------------------------------------------------------------- 259 (574)
Q Consensus 248 k~~~~Df~lwk~-------------------------------------------------------------------- 259 (574)
.++|.||..++.
T Consensus 277 ah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~ 356 (874)
T PRK05729 277 AHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYL 356 (874)
T ss_pred CCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEe
Confidence 011111111100
Q ss_pred ------------------ccCC-------------------C----CccccCCcCcCCCCccch----------------
Q 008191 260 ------------------AKEG-------------------E----PFWESPWGPGRPGWHIEC---------------- 282 (574)
Q Consensus 260 ------------------~~~g-------------------~----~~w~~~WG~g~PgWhiec---------------- 282 (574)
.+.+ . .++...||.+.|-|+++-
T Consensus 357 ~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~~~ 436 (874)
T PRK05729 357 SDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEAREKA 436 (874)
T ss_pred cCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCCcEEeCCccccccccc
Confidence 0001 1 122356999999775420
Q ss_pred --------------hH-HHHhhhC-----------CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEE-
Q 008191 283 --------------SA-MSAAYLG-----------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVT- 334 (574)
Q Consensus 283 --------------sa-m~~~~lG-----------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~- 334 (574)
|+ +-...+| +|.|+|+.|+|++|+|....++++.++.++ |+.++++| |+|+
T Consensus 437 ~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~h-G~v~d 515 (874)
T PRK05729 437 LLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIH-GLVRD 515 (874)
T ss_pred CeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEe-eeEEC
Confidence 00 0001123 367999999999999988888888877776 56889875 9998
Q ss_pred eCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----
Q 008191 335 IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAA---- 409 (574)
Q Consensus 335 ~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~---- 409 (574)
.+|+|||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+....+.+.+|+|+.+.+...+......
T Consensus 516 ~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~ 595 (874)
T PRK05729 516 EQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPD 595 (874)
T ss_pred CCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccc
Confidence 59999999999999999999999999999999987 8999999999999999888889998766554332221100
Q ss_pred -hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcchh-hhhHHHHHHHHHHHHHHHh
Q 008191 410 -ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGKKQ-AMRLESLAALEKTIRNVLT 485 (574)
Q Consensus 410 -~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~~~-~~~~~~l~~~~~~l~~~l~ 485 (574)
......+++++..++++.+.+.++| ++|+++.|+..|++|+ ..+|.|++..+++.. ..+......+..+|+.++.
T Consensus 596 ~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~~~~~~~~~~~l~~~l~~~~~ 674 (874)
T PRK05729 596 PEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEAARALYEFIWNEFCDWYLELAKPVLQEAAKRATRATLAYVLEQILR 674 (874)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 1122346889999999999999999 9999999999999998 578999998775411 1133445566778888888
Q ss_pred hh-ccccccHHHHHHHHHH
Q 008191 486 VL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 486 iL-Gi~p~~~~~i~~~l~~ 503 (574)
+| +|+|+.++++|+.+..
T Consensus 675 lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 675 LLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHcccchhhHHHHHHhccc
Confidence 88 8999999999999863
No 30
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.8e-44 Score=416.32 Aligned_cols=404 Identities=18% Similarity=0.193 Sum_probs=290.2
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHH----HHHHcCCC------------h
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIA----RANELGED------------P 159 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~----~A~~~g~~------------~ 159 (574)
+..+..++|+|+|.+||||++++++.|+++||.|++||+|.|+.|+|.+|.+++. .+.+.|++ +
T Consensus 89 ~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~ 168 (958)
T PLN02943 89 PFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRV 168 (958)
T ss_pred CEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHH
Confidence 3555556788899999999999999999999999999999999999999987755 44444654 3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC-ccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cccc-
Q 008191 160 ISLSRRYCEEFHQDMVDLHCLPPSV-EPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQ- 227 (574)
Q Consensus 160 ~e~a~~~~~~f~~~l~~L~I~~~d~-~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~- 227 (574)
++++++|...+.+.|++||+. .|+ .++.| +|...++++|.+|+++|++|++...|+||+.+.. .|..
T Consensus 169 ~~~~~~~~~~~~~~~~~lG~s-~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~ 247 (958)
T PLN02943 169 WEWKEKYGGTITNQIKRLGAS-CDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 247 (958)
T ss_pred HHHHHHHHHHHHHHHHHhCcc-eecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccc
Confidence 567899999999999999997 343 23333 6889999999999999999999999999988621 0100
Q ss_pred ----------c------------------------------------cCcccc-----------------cccCCCcccc
Q 008191 228 ----------L------------------------------------SGRKLE-----------------DNRAGERVAV 244 (574)
Q Consensus 228 ----------L------------------------------------s~~~~~-----------------~~~~g~~v~~ 244 (574)
+ .+.... ++..|+.+..
T Consensus 248 ~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~ 327 (958)
T PLN02943 248 PGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLK 327 (958)
T ss_pred cccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEE
Confidence 0 000000 0000111000
Q ss_pred CCCccCccchhhccc--------------------------------------------------------c--------
Q 008191 245 DSRKKNPADFALWKS--------------------------------------------------------A-------- 260 (574)
Q Consensus 245 ~~~k~~~~Df~lwk~--------------------------------------------------------~-------- 260 (574)
-...+++.||.+++. .
T Consensus 328 ~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~ 407 (958)
T PLN02943 328 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVS 407 (958)
T ss_pred eCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEec
Confidence 000111122221110 0
Q ss_pred ------------------cCCC-------------------Ccc----ccCCcCcCCCCccc---hhH------------
Q 008191 261 ------------------KEGE-------------------PFW----ESPWGPGRPGWHIE---CSA------------ 284 (574)
Q Consensus 261 ------------------~~g~-------------------~~w----~~~WG~g~PgWhie---csa------------ 284 (574)
..++ ..| ...||.+.|.|+++ |+.
T Consensus 408 ~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~ 487 (958)
T PLN02943 408 KQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEAL 487 (958)
T ss_pred cceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHH
Confidence 0011 112 24699999999964 321
Q ss_pred ------------HHH----------------hhhC------------CCceeeeccccccCccchHHHHHHhhccCC-CC
Q 008191 285 ------------MSA----------------AYLG------------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SH 323 (574)
Q Consensus 285 ------------m~~----------------~~lG------------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~ 323 (574)
+.. ..+| +|.|+++.|+|++|++....+++...+.++ |+
T Consensus 488 ~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf 567 (958)
T PLN02943 488 EKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPF 567 (958)
T ss_pred HHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCCh
Confidence 000 0123 357899999999988655555555555455 77
Q ss_pred ceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008191 324 ISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKA 402 (574)
Q Consensus 324 ~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~ 402 (574)
.++|+| |+++ .+|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+....+.+.+|+|+.+.+...
T Consensus 568 ~~v~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~ 646 (958)
T PLN02943 568 SYVYLH-GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQN 646 (958)
T ss_pred heEEEe-ccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899997 7765 69999999999999999999999999999999999899999999999999888888999987766543
Q ss_pred Hhhh-------------hhh----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhc
Q 008191 403 LSLL-------------DAA----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKG 463 (574)
Q Consensus 403 l~~~-------------~~~----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~ 463 (574)
+... ... ......+++++..++.+.+.+.++| ++|+++.|+..+++|+ ..+|.|++..++
T Consensus 647 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kp 725 (958)
T PLN02943 647 LPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGREIYDFFWSDFADWYIEASKT 725 (958)
T ss_pred cccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3210 000 0112346889999999999999999 9999999999999995 789999998764
Q ss_pred ch-----hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 464 KK-----QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 464 ~~-----~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.. ...+......+..++..++.+| ||+|+.++++|+.+.
T Consensus 726 rl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~ 770 (958)
T PLN02943 726 RLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALP 770 (958)
T ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcC
Confidence 21 1122334455566777788887 999999999999985
No 31
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.1e-43 Score=413.48 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=167.8
Q ss_pred CCceeeeccccccCccchHHHHHHhhccC-CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACN-NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT- 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~- 369 (574)
+|.|+|++|+||+++|+.++++++.|... .++++.|+|||||+++|+|||||+||+|+|.+++++||+|++||||++.
T Consensus 572 yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~ 651 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAA 651 (938)
T ss_pred CCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 47899999999999999999999888755 4566888999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHH-HHHH
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVL-AALS 448 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al-~~l~ 448 (574)
++++|++|+++.+.++.+.+.++++++.++...... .........+.+++..++.+.+.+.++| ++|+++.|+ ..++
T Consensus 652 ~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~-~~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~l~ 729 (938)
T TIGR00395 652 ETVQDADWKESEVEGTILRLERLYEFAEEITKESNL-ETGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYALF 729 (938)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 999999999999999999999999988765432210 0000123456889999999999999999 899999999 7899
Q ss_pred HHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 449 DPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 449 ~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++++.+|.|+...+. +.. ..+..+|+.++.+| +|+|+.++++|+.|+
T Consensus 730 ~~~~~~n~Yl~~~~~-----~~~--~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg 777 (938)
T TIGR00395 730 DLQADVDWYRRRGGV-----NHK--DVLARYLETWIKLLAPFAPHFAEEMWEEVG 777 (938)
T ss_pred HHHHHHHHHHHhCcc-----hHH--HHHHHHHHHHHHHhcCcccHHHHHHHHHcC
Confidence 999999999864321 111 13556677777777 899999999999884
No 32
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.9e-44 Score=393.02 Aligned_cols=358 Identities=19% Similarity=0.193 Sum_probs=281.8
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
.+++|.|++|||||+|++||||+|+++++|+++|+|++.||+|.+++|+||+|++|...+.+.+..++++++++.+.|.+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~ 188 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKE 188 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55789999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHhcCCCCCCCcccccc--cHHHHHHHHHHHHHCCcee-eecCceeecCCCCCCcccccCcccccccCCCccccCCCcc
Q 008191 173 DMVDLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKK 249 (574)
Q Consensus 173 ~l~~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY-~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~ 249 (574)
+|++|||. +|.++++++ |.+.+++++++|.++|++| +.+|.+||+++.+ |.
T Consensus 189 ~l~~LgI~-~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~---~~---------------------- 242 (507)
T PRK01611 189 DLDRLGVH-FDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEF---GD---------------------- 242 (507)
T ss_pred HHHHcCCe-eeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhh---CC----------------------
Confidence 99999997 687887774 4678999999999999999 8899999986543 21
Q ss_pred CccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCC-ceEEE
Q 008191 250 NPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSH-ISYWI 328 (574)
Q Consensus 250 ~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~-~~~~~ 328 (574)
+ .|+++||. +|.+.|.+ ..++||++|..- + ...|.+.|.|+. .|.....+.+++++..+. .++++
T Consensus 243 ~-~~~vl~ks--dG~~~Y~t----~Dia~~~~k~~~----~--d~~i~V~g~~q~-~hf~~~~~~~~~lg~~~~~~~~~~ 308 (507)
T PRK01611 243 D-KDRVLIKS--DGTYTYFT----RDIAYHLYKFER----F--DRVIYVVGADHH-GHFKRLKAALKALGYDPDALEVLL 308 (507)
T ss_pred C-CCeEEEEC--CCCccchH----HHHHHHHHHHhh----c--CEEEEEECCChH-HHHHHHHHHHHHcCCCcccceEEE
Confidence 0 16777775 44433322 133455554321 2 345666677643 122223366666665433 36678
Q ss_pred Eee--EEEe-CCcccccccCceeehhhhhhc-cCh----------------hhHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 008191 329 HNG--FVTI-DSEKMSKSLGNFFTIRQVMEL-YHP----------------LALRLFLIGTHYRSPINYSVVQLESASER 388 (574)
Q Consensus 329 h~g--~v~~-~G~KMSKS~Gn~i~~~d~l~~-~~~----------------d~lR~~ll~~~~~~~~~fs~~~l~~a~~~ 388 (574)
|.. +|.. +|+|||||+||+|+++|++++ ++. |++||++|+.++.++++|+++.+.+..+.
T Consensus 309 h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~ 388 (507)
T PRK01611 309 HQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGN 388 (507)
T ss_pred EEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCC
Confidence 744 4443 578999999999999999999 999 99999999999999999999998887652
Q ss_pred H-HHHHHHHHHHHHHHhhhhhhh-------cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHh
Q 008191 389 I-FYIYQTLHDCEKALSLLDAAA-------LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHT 460 (574)
Q Consensus 389 l-~~l~~~l~~~~~~l~~~~~~~-------~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~ 460 (574)
- -++.++..++.+.+.+....+ ..++.+.+++..+..+.+.+.+++ ++++++.++.++++|++.+|+||+.
T Consensus 389 ~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~p~~l~~yl~~la~~f~~fY~~ 467 (507)
T PRK01611 389 NPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELEPHRIANYLYELAGAFHSFYNR 467 (507)
T ss_pred CcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1 155566666666655432100 113446789999999999999999 9999999999999999999999975
Q ss_pred hhc--c---hhhhhHHHHHHHHHHHHHHHhhhcccc
Q 008191 461 RKG--K---KQAMRLESLAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 461 ~~~--~---~~~~~~~~l~~~~~~l~~~l~iLGi~p 491 (574)
.+. . ....|+.++.++..+|...|.+|||.+
T Consensus 468 ~~l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~ 503 (507)
T PRK01611 468 VLLKDEEEELRNARLALVKATAQVLKNGLDLLGISA 503 (507)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 531 1 124688899999999999999999976
No 33
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-42 Score=407.19 Aligned_cols=403 Identities=16% Similarity=0.187 Sum_probs=288.1
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH-----cCCC------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE-----LGED------------ 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~-----~g~~------------ 158 (574)
+..|+..+|+++|.+||||++++++.|+++||+||+||+|.|+.|+|+||.++....++ .|.+
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~ 128 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLER 128 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHH
Confidence 46677778888899999999999999999999999999999999999999998775543 2433
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCC-ccc---ccccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cccc
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSV-EPR---VSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQ 227 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~-~~r---~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~ 227 (574)
+++++++|.+.+.++|++||+. .|+ .++ ..+|...++++|.+|+++|++|++...|+||+.|-. .|+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~lG~s-~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e 207 (1052)
T PRK14900 129 VWAWKEQYGSRIGEQHKALGAS-LDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEE 207 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHhchh-eecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccC
Confidence 3568899999999999999997 443 223 237999999999999999999999999999988621 1110
Q ss_pred ------------c-----------------------------------cCcc-----------------cccccCCCccc
Q 008191 228 ------------L-----------------------------------SGRK-----------------LEDNRAGERVA 243 (574)
Q Consensus 228 ------------L-----------------------------------s~~~-----------------~~~~~~g~~v~ 243 (574)
+ .+.. ..++..|+.+.
T Consensus 208 ~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V 287 (1052)
T PRK14900 208 AHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAV 287 (1052)
T ss_pred CCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeE
Confidence 0 0000 00000111100
Q ss_pred cCCCccCccchhhcccc---------------------------------------------------------------
Q 008191 244 VDSRKKNPADFALWKSA--------------------------------------------------------------- 260 (574)
Q Consensus 244 ~~~~k~~~~Df~lwk~~--------------------------------------------------------------- 260 (574)
.-...+++.||.+++..
T Consensus 288 ~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~i 367 (1052)
T PRK14900 288 KVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATIL 367 (1052)
T ss_pred EecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceE
Confidence 00001122233222110
Q ss_pred -----------------------cCC-------------------CCcc----ccCCcCcCCCCccc-------------
Q 008191 261 -----------------------KEG-------------------EPFW----ESPWGPGRPGWHIE------------- 281 (574)
Q Consensus 261 -----------------------~~g-------------------~~~w----~~~WG~g~PgWhie------------- 281 (574)
..+ ...| ...||.+.|.|+++
T Consensus 368 e~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~ 447 (1052)
T PRK14900 368 EPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEA 447 (1052)
T ss_pred EEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCCCcEEeccccccc
Confidence 000 0112 34699999999753
Q ss_pred ---hh-------------------HHHHhhhC-----------CCceeeeccccccCccchHHHHHHhhccCC-CCceEE
Q 008191 282 ---CS-------------------AMSAAYLG-----------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYW 327 (574)
Q Consensus 282 ---cs-------------------am~~~~lG-----------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~ 327 (574)
|. .+.. .+| +|.|+|++|+|++++|....+++.....+. ||.+++
T Consensus 448 ~~~~~~~~~~~~~dVlDvWFdS~l~y~s-~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~ 526 (1052)
T PRK14900 448 CSTCGKAELRQDEDVLDTWFSSGLWPFS-TMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVY 526 (1052)
T ss_pred ccccCccceecCCceEEEEEcCChHHHH-HHcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeE
Confidence 10 1111 122 367899999999988666555555555555 556775
Q ss_pred EEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008191 328 IHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSL 405 (574)
Q Consensus 328 ~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~ 405 (574)
+ ||||+. +|+|||||+||+|+|.|++++||+|+|||||++. ++++|++|+++.+....+.+.+++|..+.+...+..
T Consensus 527 ~-hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~ 605 (1052)
T PRK14900 527 L-HPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSG 605 (1052)
T ss_pred e-cccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5 699998 9999999999999999999999999999999986 899999999999988777777888855444322222
Q ss_pred hh-hh-----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcc---h-hhhhHHHH
Q 008191 406 LD-AA-----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGK---K-QAMRLESL 473 (574)
Q Consensus 406 ~~-~~-----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~---~-~~~~~~~l 473 (574)
+. .. ......+.+++..++.+...+.++| ++|+++.|+..+++|+ ..+|.|++..+.. . ...+....
T Consensus 606 ~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~~~ 684 (1052)
T PRK14900 606 YQERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFNDAANAVYAFVWHELCDWYIELAKEALASEDPEARRSVQ 684 (1052)
T ss_pred cCcccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccCCHHHHHHHH
Confidence 21 00 0112356889999999999999999 9999999999999997 5899999976632 1 11122334
Q ss_pred HHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 474 AALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 474 ~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
..+..+|+.++.+| +|+|+.++++|+.|.
T Consensus 685 ~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~ 714 (1052)
T PRK14900 685 AVLVHCLQTSYRLLHPFMPFITEELWHVLR 714 (1052)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhc
Confidence 45666777777777 899999999999985
No 34
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=9.4e-45 Score=376.09 Aligned_cols=270 Identities=20% Similarity=0.216 Sum_probs=206.6
Q ss_pred eEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008191 98 GMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 98 ~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
.|.+..|+|+|.+||||+|+++.+|+++|++|++|++|.+++|+||+|+||+.+|++.|+++++++++|.++|+++|++|
T Consensus 3 ~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~l 82 (314)
T cd00812 3 YILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRM 82 (314)
T ss_pred EEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCc--cccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc-----cCcccccccCCCccccCCCc
Q 008191 178 HCLPPSVE--PRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL-----SGRKLEDNRAGERVAVDSRK 248 (574)
Q Consensus 178 ~I~~~d~~--~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L-----s~~~~~~~~~g~~v~~~~~k 248 (574)
||. +|.. .+++ +|++.+++++.+|.++|++|++++.+|||+....-|=++ .....+.+.... . .....
T Consensus 83 gi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~-~-~p~~~ 159 (314)
T cd00812 83 GFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLD-G-WPEEV 159 (314)
T ss_pred ccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcC-c-CCHHH
Confidence 996 5643 3333 688899999999999999999999999996542222122 111111111110 0 00000
Q ss_pred cCccchhhcccccCCCCccccCCcCcCCC-CccchhHHHH----hhh----------------------CCCceeeeccc
Q 008191 249 KNPADFALWKSAKEGEPFWESPWGPGRPG-WHIECSAMSA----AYL----------------------GHSFDIHGGGM 301 (574)
Q Consensus 249 ~~~~Df~lwk~~~~g~~~w~~~WG~g~Pg-Whiecsam~~----~~l----------------------G~~~dih~~G~ 301 (574)
+ ..+..|.. .+++.+||+++|+ |+++|-..+. .|+ -++.|||++|+
T Consensus 160 ~--~~~~~~l~-----isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~ 232 (314)
T cd00812 160 R--AMQENWIG-----CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGK 232 (314)
T ss_pred H--HHHHHHhe-----eeeecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecch
Confidence 1 12334443 5667899999994 7776632111 111 02689999999
Q ss_pred cccCccch---HHHHHHhhccC---CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCC
Q 008191 302 DLVFPHHE---NEIAQSCAACN---NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPI 375 (574)
Q Consensus 302 Dl~fpH~~---~~~A~~~a~~~---~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~ 375 (574)
|++++|+. .+.+++.+++. .++.++ +++|||+++|+|||||+||+|+++|++++|++|++||++++... ++.
T Consensus 233 D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~-~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~ 310 (314)
T cd00812 233 EHAPNHLLYSRFNHKALFDEGLVTDEPPKGL-IVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDA 310 (314)
T ss_pred hHHHHHHHHHHHHHHHHcCcccccccCcHHh-eecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCC
Confidence 99999984 55566655553 555566 57899999999999999999999999999999999999999855 999
Q ss_pred CCCH
Q 008191 376 NYSV 379 (574)
Q Consensus 376 ~fs~ 379 (574)
+|++
T Consensus 311 ~f~~ 314 (314)
T cd00812 311 DFDW 314 (314)
T ss_pred CCCC
Confidence 9874
No 35
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.3e-43 Score=376.69 Aligned_cols=274 Identities=19% Similarity=0.211 Sum_probs=208.8
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc---------CCCh-------H
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL---------GEDP-------I 160 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~---------g~~~-------~ 160 (574)
..+....|||||.+||||+++++.+|+++||+|++|++|.|++|+|+||.+|+..|+++ ++++ +
T Consensus 3 f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~ 82 (382)
T cd00817 3 FVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCW 82 (382)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHH
Confidence 34556678889999999999999999999999999999999999999999999998765 3444 4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC--Cccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccc
Q 008191 161 SLSRRYCEEFHQDMVDLHCLPPS--VEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDN 236 (574)
Q Consensus 161 e~a~~~~~~f~~~l~~L~I~~~d--~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~ 236 (574)
+++++|.++|++++++|||. .| .+.+++ +|.+.+++++.+|.++|++|++...++||+.|..... ...+ +.
T Consensus 83 ~~~~~~~~~~~~~~~~lgi~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~---~~ev-c~ 157 (382)
T cd00817 83 EWKEESGGKIREQLKRLGAS-VDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAIS---DIEV-CS 157 (382)
T ss_pred HHHHHHHHHHHHHHHHhCce-eecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCC---cchh-cc
Confidence 68999999999999999997 34 555665 6999999999999999999999999999998743222 1111 11
Q ss_pred cCCCccccC------------------CCccCccc---------hhhcccc-cCCCCccccCCcCcCCCCccc-------
Q 008191 237 RAGERVAVD------------------SRKKNPAD---------FALWKSA-KEGEPFWESPWGPGRPGWHIE------- 281 (574)
Q Consensus 237 ~~g~~v~~~------------------~~k~~~~D---------f~lwk~~-~~g~~~w~~~WG~g~PgWhie------- 281 (574)
++|..+... ..+.++.. +.-|-.. .+-.+++...||++.|.|+.+
T Consensus 158 ~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~ 237 (382)
T cd00817 158 RSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVV 237 (382)
T ss_pred cCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEe
Confidence 233332210 01111100 1111111 111234567899999977542
Q ss_pred -------------------------------------hhHHHHhhhC-----------CCceeeeccccccCccchHHHH
Q 008191 282 -------------------------------------CSAMSAAYLG-----------HSFDIHGGGMDLVFPHHENEIA 313 (574)
Q Consensus 282 -------------------------------------csam~~~~lG-----------~~~dih~~G~Dl~fpH~~~~~A 313 (574)
++++.. .+| +|.|+|++|+|++++|+.++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~-~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~ 316 (382)
T cd00817 238 AREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFS-TLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIM 316 (382)
T ss_pred cchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHH-HhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHH
Confidence 111211 111 3679999999999999999999
Q ss_pred HHhhccCC-CCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCC
Q 008191 314 QSCAACNN-SHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINY 377 (574)
Q Consensus 314 ~~~a~~~~-~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~f 377 (574)
++.++.+. ++.++++| |+|+ .+|+|||||+||+|+++|++++||+|++|||+++. ++.+|.+|
T Consensus 317 ~~~~~~g~~p~~~v~~h-g~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 317 RGLKLTGKLPFKEVYLH-GLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHHhhCCCchHHeEee-eeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 99998776 45888775 8888 79999999999999999999999999999999997 68898887
No 36
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-41 Score=398.35 Aligned_cols=405 Identities=20% Similarity=0.235 Sum_probs=291.6
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CCC----------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GED---------------- 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~~---------------- 158 (574)
+..++..+|+++|.+||||++++++.|+++||.||+||+|.+..|+|.||.+|+..+++. |++
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~ 121 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEK 121 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHH
Confidence 456666778888999999999999999999999999999999999999999999999774 654
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------C--cc
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------E--YG 226 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~--yg 226 (574)
+++++.+|.+.+.+.+++||+......++.| +|++.++.+|.+|+++|++|++...|+||+.|.. . |.
T Consensus 122 c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~ 201 (975)
T PRK06039 122 CRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYK 201 (975)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhccc
Confidence 6799999999999999999986321122333 6899999999999999999999999999988631 1 21
Q ss_pred c-----------ccC-c----------------------cccc----------c------------------------c-
Q 008191 227 Q-----------LSG-R----------------------KLED----------N------------------------R- 237 (574)
Q Consensus 227 ~-----------Ls~-~----------------------~~~~----------~------------------------~- 237 (574)
. +.+ . .++. . .
T Consensus 202 ~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~ 281 (975)
T PRK06039 202 DVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSE 281 (975)
T ss_pred ccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCcc
Confidence 1 100 0 0000 0 0
Q ss_pred -CCCc----------------------cccC--------CCccCccchhhcccc--------------------------
Q 008191 238 -AGER----------------------VAVD--------SRKKNPADFALWKSA-------------------------- 260 (574)
Q Consensus 238 -~g~~----------------------v~~~--------~~k~~~~Df~lwk~~-------------------------- 260 (574)
.|.+ |..+ ....++.||..++..
T Consensus 282 L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v 361 (975)
T PRK06039 282 LEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFV 361 (975)
T ss_pred ccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCH
Confidence 0000 0000 000112233322210
Q ss_pred ----------------------------------------------------------------------cC--------
Q 008191 261 ----------------------------------------------------------------------KE-------- 262 (574)
Q Consensus 261 ----------------------------------------------------------------------~~-------- 262 (574)
+.
T Consensus 362 ~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~ 441 (975)
T PRK06039 362 KDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLE 441 (975)
T ss_pred HHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHHHh
Confidence 00
Q ss_pred CCCcc----ccCCcCcCCCCccc-hhH----------------------------------------H------------
Q 008191 263 GEPFW----ESPWGPGRPGWHIE-CSA----------------------------------------M------------ 285 (574)
Q Consensus 263 g~~~w----~~~WG~g~PgWhie-csa----------------------------------------m------------ 285 (574)
+...| ...||.+.|.|+++ |.. |
T Consensus 442 ~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFd 521 (975)
T PRK06039 442 NARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFD 521 (975)
T ss_pred cCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEeccccccceee
Confidence 00112 23599999999864 410 0
Q ss_pred ----HHhhhC------------CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCce
Q 008191 286 ----SAAYLG------------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNF 347 (574)
Q Consensus 286 ----~~~~lG------------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~ 347 (574)
....+| +|.|+++.|+|+++++...-.+++.++.+. ||.++++ ||||+. +|+|||||+||+
T Consensus 522 Sg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~-hG~Vld~~G~KMSKSlGNv 600 (975)
T PRK06039 522 SGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLV-HGHVLDEDGQKMSKSLGNY 600 (975)
T ss_pred cCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEE-eeeEECCCCCCcCCCCCCc
Confidence 000112 367899999999998766666666666654 7788866 599986 899999999999
Q ss_pred eehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHh--hhhhh------hcCCCCCh
Q 008191 348 FTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQ-LESASERIFYIYQTLHDCEKALS--LLDAA------ALKDSIPP 417 (574)
Q Consensus 348 i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~-l~~a~~~l~~l~~~l~~~~~~l~--~~~~~------~~~~~~~~ 417 (574)
|+|.|++++||+|++|||+++. +.+++++|+++. +....+.+.+++|+++++..+.. .+... ......++
T Consensus 601 IdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~ 680 (975)
T PRK06039 601 VDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDR 680 (975)
T ss_pred CCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHH
Confidence 9999999999999999999998 469999999999 55566778888888776543221 11000 11123467
Q ss_pred hHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-HHHHHhhhc--ch---hhhhHHHHHHHHHHHHHHHhhh-ccc
Q 008191 418 DTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTI-NDLLHTRKG--KK---QAMRLESLAALEKTIRNVLTVL-GLM 490 (574)
Q Consensus 418 ~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~-N~~~~~~~~--~~---~~~~~~~l~~~~~~l~~~l~iL-Gi~ 490 (574)
+++..++.+.+.+.++| ++|+++.|++.|++|+..+ |.|++..+. +. ...+......+..+|..++.+| +|+
T Consensus 681 wils~l~~li~~v~~a~-e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~~~~~~a~~~L~~~L~~l~~lLaPf~ 759 (975)
T PRK06039 681 WILSRLNSLVKEVTEAL-DNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDDPDKLAAYATLYTVLETLSRLAAPFT 759 (975)
T ss_pred HHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999 8999999999999999876 667776542 21 1223445556667777788887 899
Q ss_pred cccHHHHHHHHH
Q 008191 491 STGYSEVLLQLR 502 (574)
Q Consensus 491 p~~~~~i~~~l~ 502 (574)
|+.++++|+.|.
T Consensus 760 Pf~aEei~~~L~ 771 (975)
T PRK06039 760 PFIAEEIYQNLT 771 (975)
T ss_pred HHHHHHHHHhcc
Confidence 999999999986
No 37
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-41 Score=395.99 Aligned_cols=403 Identities=19% Similarity=0.187 Sum_probs=287.6
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc------CCChH-------HHH
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL------GEDPI-------SLS 163 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~------g~~~~-------e~a 163 (574)
..+....|+++|.+||||++++++.|+++||.|++|++|.|+.|+|.||.+|+.+++++ +.++. +++
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 34444456677999999999999999999999999999999999999999999999885 56665 599
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cccc------
Q 008191 164 RRYCEEFHQDMVDLHCLP-PSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQ------ 227 (574)
Q Consensus 164 ~~~~~~f~~~l~~L~I~~-~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~------ 227 (574)
+++.+.+.+++++||+.. .+....|. +|...++++|.+|+++|++|++...|+||+.+.. .|+.
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~ 210 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSI 210 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceE
Confidence 999999999999999963 22222332 6899999999999999999999999999988631 1111
Q ss_pred -----ccC---------ccc--------------------cc-----------c--------------------------
Q 008191 228 -----LSG---------RKL--------------------ED-----------N-------------------------- 236 (574)
Q Consensus 228 -----Ls~---------~~~--------------------~~-----------~-------------------------- 236 (574)
+.+ ..+ +. .
T Consensus 211 yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~ 290 (912)
T PRK05743 211 YVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFK 290 (912)
T ss_pred EEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEec
Confidence 000 000 00 0
Q ss_pred ---cCCC-----------------ccccC--------CCccCccchhhcccc----------------------------
Q 008191 237 ---RAGE-----------------RVAVD--------SRKKNPADFALWKSA---------------------------- 260 (574)
Q Consensus 237 ---~~g~-----------------~v~~~--------~~k~~~~Df~lwk~~---------------------------- 260 (574)
..|. .|..+ ...+++.||..++..
T Consensus 291 G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~e 370 (912)
T PRK05743 291 GKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFK 370 (912)
T ss_pred hHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHH
Confidence 0000 00000 000112233322210
Q ss_pred --------------------------------cC-------------C--------------------------------
Q 008191 261 --------------------------------KE-------------G-------------------------------- 263 (574)
Q Consensus 261 --------------------------------~~-------------g-------------------------------- 263 (574)
++ .
T Consensus 371 a~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~~ 450 (912)
T PRK05743 371 ANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIESMVEN 450 (912)
T ss_pred hHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEEChHHHHHHHHHHhc
Confidence 00 0
Q ss_pred CCccc----cCCcCcCCCCccc-hh-------HH--H-------------------------Hhh---------------
Q 008191 264 EPFWE----SPWGPGRPGWHIE-CS-------AM--S-------------------------AAY--------------- 289 (574)
Q Consensus 264 ~~~w~----~~WG~g~PgWhie-cs-------am--~-------------------------~~~--------------- 289 (574)
.+.|. .-||.+.|-|+.+ |. .. + ..+
T Consensus 451 ~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~ 530 (912)
T PRK05743 451 RPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGS 530 (912)
T ss_pred CcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCC
Confidence 01221 2489999988752 30 00 0 000
Q ss_pred -----------hCCCceeeeccccccC--ccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhh
Q 008191 290 -----------LGHSFDIHGGGMDLVF--PHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME 355 (574)
Q Consensus 290 -----------lG~~~dih~~G~Dl~f--pH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~ 355 (574)
..+|.|+|++|+|+++ ||...++++.. .+..||.++++ ||||+. +|+|||||+||+|+|.++++
T Consensus 531 s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~-HG~vld~~G~KMSKSlGNvIdP~~ii~ 608 (912)
T PRK05743 531 SHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLT-HGFTVDGKGRKMSKSLGNVIDPQDVIK 608 (912)
T ss_pred CHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHHh-cCCCccceeEE-eeeEECCCCCCCCCCCCCcCCHHHHHH
Confidence 1247899999999997 55777777665 34456777755 699996 99999999999999999999
Q ss_pred ccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhcCCCCChhHHHHHHHHHHH
Q 008191 356 LYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDA------AALKDSIPPDTVTSINKFHND 429 (574)
Q Consensus 356 ~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~------~~~~~~~~~~l~~~l~~~~~~ 429 (574)
+||+|+||||++++++++|++|+++.+.+..+.+.+|+|+++.+...+..... .......+.+++..++++.+.
T Consensus 609 ~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~ 688 (912)
T PRK05743 609 KYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEE 688 (912)
T ss_pred hcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHH
Confidence 99999999999998999999999999999888888888887766544432111 011234578899999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcc------hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHH
Q 008191 430 FLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGK------KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQ 500 (574)
Q Consensus 430 ~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~------~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~ 500 (574)
+.++| ++|++++|++.|++|+ ...|.|++..+.. ....+......+..++..++.+| +|+|+.++++|+.
T Consensus 689 v~~~~-e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~ 767 (912)
T PRK05743 689 ILEAY-ENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQY 767 (912)
T ss_pred HHHHH-HhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 99999 9999999999999999 4568888866531 11122223233445566667777 8999999999999
Q ss_pred HH
Q 008191 501 LR 502 (574)
Q Consensus 501 l~ 502 (574)
+.
T Consensus 768 l~ 769 (912)
T PRK05743 768 LP 769 (912)
T ss_pred cc
Confidence 84
No 38
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.3e-41 Score=387.31 Aligned_cols=385 Identities=20% Similarity=0.256 Sum_probs=279.1
Q ss_pred eEEEcC--CCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCG--VTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cg--pt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
++|+|+ |+|+|.+||||+++++++|+++||+|++|++|.|++|+|+||.+|+.+|.+.|++|.+++++|.+.|+++|+
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~ 112 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLK 112 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 466665 455599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCC--ccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCC-------------CCccc-----------
Q 008191 176 DLHCLPPSV--EPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF-------------PEYGQ----------- 227 (574)
Q Consensus 176 ~L~I~~~d~--~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~-------------~~yg~----------- 227 (574)
+||+. .|+ +.+++ +|.+.++++|.+|+++|++|++...|+||+.|. ..||.
T Consensus 113 ~lGi~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f 191 (805)
T PRK00390 113 SLGFS-YDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWF 191 (805)
T ss_pred HhCCc-ccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceee
Confidence 99997 553 34443 799999999999999999999999999998862 11211
Q ss_pred -------------------------------------------ccC--ccc--------------------cc----cc-
Q 008191 228 -------------------------------------------LSG--RKL--------------------ED----NR- 237 (574)
Q Consensus 228 -------------------------------------------Ls~--~~~--------------------~~----~~- 237 (574)
+.+ ..+ +. ..
T Consensus 192 ~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~ 271 (805)
T PRK00390 192 LKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLA 271 (805)
T ss_pred EecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhh
Confidence 000 000 00 00
Q ss_pred --------------------------------CCCc-----------------cccC--------CCccCccchhhcccc
Q 008191 238 --------------------------------AGER-----------------VAVD--------SRKKNPADFALWKSA 260 (574)
Q Consensus 238 --------------------------------~g~~-----------------v~~~--------~~k~~~~Df~lwk~~ 260 (574)
.|.. |..+ ...+++.||..++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 351 (805)
T PRK00390 272 EQNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKY 351 (805)
T ss_pred cchHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHc
Confidence 0000 0000 001122355444321
Q ss_pred c-----------------------CC------------------------------C-------Cccc----cCCcCcCC
Q 008191 261 K-----------------------EG------------------------------E-------PFWE----SPWGPGRP 276 (574)
Q Consensus 261 ~-----------------------~g------------------------------~-------~~w~----~~WG~g~P 276 (574)
. .| . ..|. .-||.+.|
T Consensus 352 ~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIP 431 (805)
T PRK00390 352 GLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIP 431 (805)
T ss_pred CCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCcee
Confidence 0 00 0 1122 24899999
Q ss_pred CCcc-chhHH----------------------------------------------------------HHhhhC------
Q 008191 277 GWHI-ECSAM----------------------------------------------------------SAAYLG------ 291 (574)
Q Consensus 277 gWhi-ecsam----------------------------------------------------------~~~~lG------ 291 (574)
-||. +|..+ ...+..
T Consensus 432 i~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~ 511 (805)
T PRK00390 432 IIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEA 511 (805)
T ss_pred EEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccC
Confidence 8875 34210 000000
Q ss_pred ----------CCceeeeccccccCccchHHH---HHHh--h-ccC-CCCceEEEEeeEEEeCCcccccccCceeehhhhh
Q 008191 292 ----------HSFDIHGGGMDLVFPHHENEI---AQSC--A-ACN-NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVM 354 (574)
Q Consensus 292 ----------~~~dih~~G~Dl~fpH~~~~~---A~~~--a-~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l 354 (574)
+|.|+.++|.|++.-|..+.. +.+. + ..+ .|+.++ +||||| |||||+||+|+|.+++
T Consensus 512 ~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v-~~~G~v-----KMSKS~GN~i~p~~~i 585 (805)
T PRK00390 512 PFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKL-LTQGMV-----KMSKSKGNVVDPDDII 585 (805)
T ss_pred cCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhh-eecCcE-----EeCCCCCCCCCHHHHH
Confidence 368999999998744433221 1111 1 223 466665 889999 9999999999999999
Q ss_pred hccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHH
Q 008191 355 ELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLAS 433 (574)
Q Consensus 355 ~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~a 433 (574)
++||+|++|||+++. +++++++|+++.+.++.+.+.++++++........... ......+++++..++++.+.+.++
T Consensus 586 ~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~ 663 (805)
T PRK00390 586 EKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALD--VAALSEDKELRRKLHKTIKKVTED 663 (805)
T ss_pred HHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccC--cccChhhHHHHHHHHHHHHHHHHH
Confidence 999999999999984 99999999999999999999999998876322211110 112245689999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 434 MSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 434 m~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
| ++|+++.|++.|++|+..+++|+.. .....+..++..++.+| +|+|+.+|++|+.+.
T Consensus 664 ~-e~~~f~~ai~~l~~f~n~lsk~~~~----------~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~ 722 (805)
T PRK00390 664 I-ERLRFNTAIAALMELVNALYKAEDE----------QDKAVLREALEILVRLLAPFAPHLAEELWEKLG 722 (805)
T ss_pred H-HcCCHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcC
Confidence 9 8999999999999999999998721 01123455667777777 899999999999874
No 39
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-40 Score=391.65 Aligned_cols=211 Identities=18% Similarity=0.161 Sum_probs=170.0
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhccC
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTH 370 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~ 370 (574)
+|.|+|+.|+|++++|...-++++.++++.+|.+.+++||||+. +|+|||||+||+|+|.+++++||+|+|||||++++
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~ 645 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSP 645 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCC
Confidence 36789999999999876666677777777655555577899998 89999999999999999999999999999999876
Q ss_pred C--CCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHhhh--------hhh------hcCCCCChhHHHHHHHHHHHHHHH
Q 008191 371 Y--RSPINYSVVQLESASE-RIFYIYQTLHDCEKALSLL--------DAA------ALKDSIPPDTVTSINKFHNDFLAS 433 (574)
Q Consensus 371 ~--~~~~~fs~~~l~~a~~-~l~~l~~~l~~~~~~l~~~--------~~~------~~~~~~~~~l~~~l~~~~~~~~~a 433 (574)
+ .++++|+++.+.+..+ .+.+++|+++.+...+... ... ......++|++..++++.+.+.++
T Consensus 646 ~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~ 725 (1159)
T PLN02882 646 VVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREE 725 (1159)
T ss_pred cccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 6889999999987754 6778888876665544321 000 011245789999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHH-HHHHHHHhhhcch-----hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHH
Q 008191 434 MSDDLHTTVVLAALSDPLK-TINDLLHTRKGKK-----QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 434 m~dd~n~~~al~~l~~l~~-~~N~~~~~~~~~~-----~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~ 503 (574)
| ++|++++|+..|++|+. .+|.|++..+++. ...+...+..+..+|..++.+| +|+|+.++++|++|..
T Consensus 726 m-e~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~ 801 (1159)
T PLN02882 726 M-GAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRK 801 (1159)
T ss_pred H-HccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhcc
Confidence 9 99999999999999997 5899999877531 2234556677778888888887 8999999999999863
No 40
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=6e-41 Score=385.95 Aligned_cols=392 Identities=20% Similarity=0.236 Sum_probs=283.1
Q ss_pred CceeEEEc--CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 95 GKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 95 ~~v~~y~c--gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
++-++|++ .|+|+|.+||||+++++++|+++||+|++||+|.|++|+|+||.+|+.+|.+.|++|.++++++.+.|.+
T Consensus 27 ~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~ 106 (842)
T TIGR00396 27 NKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKK 106 (842)
T ss_pred CCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44456666 4666699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCC--ccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC--------------Ccccc------
Q 008191 173 DMVDLHCLPPSV--EPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP--------------EYGQL------ 228 (574)
Q Consensus 173 ~l~~L~I~~~d~--~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~--------------~yg~L------ 228 (574)
+|++||+. .|+ +.+++ +|...++++|.+|+++|++|++...|+||+.|.. .||.-
T Consensus 107 ~~~~lG~~-~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~ 185 (842)
T TIGR00396 107 QLQALGFS-YDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKEL 185 (842)
T ss_pred HHHHhCCc-ccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeec
Confidence 99999997 443 44444 7999999999999999999999999999988631 12110
Q ss_pred ------------------------------------------------cC--ccc--------------------ccc--
Q 008191 229 ------------------------------------------------SG--RKL--------------------EDN-- 236 (574)
Q Consensus 229 ------------------------------------------------s~--~~~--------------------~~~-- 236 (574)
.+ ..+ +..
T Consensus 186 ~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~ 265 (842)
T TIGR00396 186 KQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLV 265 (842)
T ss_pred ceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHH
Confidence 00 000 000
Q ss_pred -----------------------------------cCCCc-----------------cccC--------CCccCccchhh
Q 008191 237 -----------------------------------RAGER-----------------VAVD--------SRKKNPADFAL 256 (574)
Q Consensus 237 -----------------------------------~~g~~-----------------v~~~--------~~k~~~~Df~l 256 (574)
..|.. |..+ ...+++.||..
T Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~ 345 (842)
T TIGR00396 266 EKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEF 345 (842)
T ss_pred HhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHH
Confidence 00000 0000 00112245554
Q ss_pred ccccc---------------------CC-------------------------------------CCccc----cCCcCc
Q 008191 257 WKSAK---------------------EG-------------------------------------EPFWE----SPWGPG 274 (574)
Q Consensus 257 wk~~~---------------------~g-------------------------------------~~~w~----~~WG~g 274 (574)
++... .| ...|. .-||.+
T Consensus 346 ~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~P 425 (842)
T TIGR00396 346 AQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEP 425 (842)
T ss_pred HHHhCCCcceeeCCcccccccccccCCceEecchhcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCc
Confidence 44210 00 01122 248998
Q ss_pred CCCCccc-hhHH-----------H------------------------------------------------Hhh-----
Q 008191 275 RPGWHIE-CSAM-----------S------------------------------------------------AAY----- 289 (574)
Q Consensus 275 ~PgWhie-csam-----------~------------------------------------------------~~~----- 289 (574)
.|-||++ |..+ . ..|
T Consensus 426 IPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~ 505 (842)
T TIGR00396 426 IPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKN 505 (842)
T ss_pred eEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCC
Confidence 8888752 3110 0 000
Q ss_pred ---------h--CCCceeeeccccccCccchHHHH---HHh---hccC-CCCceEEEEeeEEEe-----CCc--------
Q 008191 290 ---------L--GHSFDIHGGGMDLVFPHHENEIA---QSC---AACN-NSHISYWIHNGFVTI-----DSE-------- 338 (574)
Q Consensus 290 ---------l--G~~~dih~~G~Dl~fpH~~~~~A---~~~---a~~~-~~~~~~~~h~g~v~~-----~G~-------- 338 (574)
+ -.|+|+.++|+|++.-|..+... .+. ...+ .|+.++ +.+|||+. +|+
T Consensus 506 ~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l-~~~G~Vl~~~~~~~G~~~~~~~~~ 584 (842)
T TIGR00396 506 TDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKL-INQGMVLGFYYPPNGKSPPDELTE 584 (842)
T ss_pred cCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHH-hccceEEeeeecCCCCccChhhhc
Confidence 0 03688999999987555444221 111 1223 466777 55799997 787
Q ss_pred -------------------ccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 008191 339 -------------------KMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHD 398 (574)
Q Consensus 339 -------------------KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~ 398 (574)
|||||+||+|+|.+++++||+|++|||+++. +++++++|+++.+..+.+.+.+|++++..
T Consensus 585 ~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~ 664 (842)
T TIGR00396 585 RDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYN 664 (842)
T ss_pred cccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999964 99999999999999999999999999877
Q ss_pred HHHHHhhhh--hhhcCCCCChhHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHH
Q 008191 399 CEKALSLLD--AAALKDSIPPDTVTSINKFHNDFLASMSDDLH-TTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAA 475 (574)
Q Consensus 399 ~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n-~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~ 475 (574)
+...+.... ........+++++..++++.+.+.++| ++++ ++.|++.|++|+..+.++... ..
T Consensus 665 ~~~~~~~~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~-e~y~~fn~ai~~l~~f~n~L~~~~~~-------------~~ 730 (842)
T TIGR00396 665 ILGELDGKTYLTPTILEEAQKELRRDVHKFLKKVTEDL-EKLESFNTAISAMMILLNALYKAKKD-------------AL 730 (842)
T ss_pred HHhhhcccccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHhhhhH-------------HH
Confidence 544332210 001123456889999999999999999 7877 999999999999877664210 12
Q ss_pred HHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 476 LEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 476 ~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+..+|..++.+| +|+|+.+||+|+.+.
T Consensus 731 l~~~l~~ll~lLaPf~PhiaEElW~~l~ 758 (842)
T TIGR00396 731 YLEYLKGFLTVLSPFAPHLAEELWEKLG 758 (842)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhC
Confidence 445666777777 899999999999884
No 41
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.1e-42 Score=363.71 Aligned_cols=275 Identities=23% Similarity=0.272 Sum_probs=201.3
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CCCh----------------
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GEDP---------------- 159 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~~~---------------- 159 (574)
..+....|||||++||||+|+++++|+++||+|++||+|.+++|+||||.+|..+|++. |+++
T Consensus 3 f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~ 82 (338)
T cd00818 3 FVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKC 82 (338)
T ss_pred eEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHH
Confidence 45666789999999999999999999999999999999999999999999999999886 7764
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC---CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--CC----CcccccC
Q 008191 160 ISLSRRYCEEFHQDMVDLHCLPP---SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--FP----EYGQLSG 230 (574)
Q Consensus 160 ~e~a~~~~~~f~~~l~~L~I~~~---d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--~~----~yg~Ls~ 230 (574)
+++|++|.++|.++|++|||..+ ...+..++|++.++++|++|+++|++|++++.+||.+.- .+ ++.++..
T Consensus 83 ~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~ 162 (338)
T cd00818 83 REFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKD 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHH
Confidence 79999999999999999999643 234444589999999999999999999999999994321 11 1111111
Q ss_pred cccccccCCCccccCCCccCccchhhcccc-cCCCCccccCCcCcCCCCccc-h-------------------h-HHHHh
Q 008191 231 RKLEDNRAGERVAVDSRKKNPADFALWKSA-KEGEPFWESPWGPGRPGWHIE-C-------------------S-AMSAA 288 (574)
Q Consensus 231 ~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~-~~g~~~w~~~WG~g~PgWhie-c-------------------s-am~~~ 288 (574)
..++.+ .......+..+. .+.-|-.. ++-..++...||++.|.|.++ | . .++..
T Consensus 163 ~l~~~~-~~~~~~P~~~~~---~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~ 238 (338)
T cd00818 163 RLLEAN-DKVNWIPEWVKN---RFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL 238 (338)
T ss_pred HHHHHH-hcCcEECHHHHH---HHHHHHhcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc
Confidence 111111 000000010111 11112211 111234567899999977653 2 1 12211
Q ss_pred -h------hC--CCceeeeccccccC--ccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhhc
Q 008191 289 -Y------LG--HSFDIHGGGMDLVF--PHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMEL 356 (574)
Q Consensus 289 -~------lG--~~~dih~~G~Dl~f--pH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~ 356 (574)
+ +. ++.|+++.|+||++ +|...++++. +.+..+|.++|+| ||++. +|+|||||+||+|+++|+++.
T Consensus 239 ~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~h-g~~~~~~g~KmSKS~gn~i~~~~~~~~ 316 (338)
T cd00818 239 HYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVH-GFVLDEDGRKMSKSLGNYVDPQEVVDK 316 (338)
T ss_pred CCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEE-eeEECCCCCCCCCCCCCcCCHHHHHHH
Confidence 1 11 36789999999997 7878877765 3345677899885 77764 899999999999999999999
Q ss_pred cChhhHHHHhhcc-CCCCCCCC
Q 008191 357 YHPLALRLFLIGT-HYRSPINY 377 (574)
Q Consensus 357 ~~~d~lR~~ll~~-~~~~~~~f 377 (574)
||+|++||||++. +..+|++|
T Consensus 317 ~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 317 YGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred cCcHHHHHHHHhCCCccCCCCC
Confidence 9999999999997 68898876
No 42
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=2.9e-40 Score=384.79 Aligned_cols=209 Identities=21% Similarity=0.174 Sum_probs=169.8
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhh---------ccChh
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME---------LYHPL 360 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~---------~~~~d 360 (574)
+|.|+|+.|+|++|+|....+.++.++.+. |+.++|+| ||++. +|+|||||+||+|+|.++++ +||+|
T Consensus 563 ~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD 641 (974)
T PLN02843 563 YPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGAD 641 (974)
T ss_pred CCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChH
Confidence 478899999999998887777777777776 77999887 88776 89999999999999999999 79999
Q ss_pred hHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hcCCCCChhHHHHHHHHHHHHHHHHH
Q 008191 361 ALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAA-----ALKDSIPPDTVTSINKFHNDFLASMS 435 (574)
Q Consensus 361 ~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~am~ 435 (574)
+||||+++.+|+++++|+.+.+.++.+.+.+|+++++.+...+...... ......+++++..++++.+.+.++|
T Consensus 642 ~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay- 720 (974)
T PLN02843 642 VLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY- 720 (974)
T ss_pred HHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999988766554432110 1112347889999999999999999
Q ss_pred ccCCHHHHHHHHHHH--HHHHHHHHHhhhcch------hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 436 DDLHTTVVLAALSDP--LKTINDLLHTRKGKK------QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 436 dd~n~~~al~~l~~l--~~~~N~~~~~~~~~~------~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++|++++|++.|+++ ...+|.|++..+++. ...+......+..++..++.+| +|+|+.++++|+.+.
T Consensus 721 e~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~ 796 (974)
T PLN02843 721 DNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLP 796 (974)
T ss_pred HccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcc
Confidence 999999999999988 568999999877531 1122222223445556666666 899999999999985
No 43
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.1e-39 Score=379.47 Aligned_cols=207 Identities=17% Similarity=0.142 Sum_probs=157.6
Q ss_pred CceeeeccccccC--ccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVF--PHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~f--pH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
|.|+|++|+|+++ +|...++++.. .+..||.++++ ||||+. +|+|||||+||+|+|.|++++||+|++|||+++.
T Consensus 564 P~d~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~-hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~ 641 (861)
T TIGR00392 564 PADFILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVIT-HGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS 641 (861)
T ss_pred CceEEEEecchhccHHHHHHHHHHHH-cCCCChHhhEe-cceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC
Confidence 5789999999999 55555555433 23457788866 599986 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHH--HHHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccCCH
Q 008191 370 HYRSPINYSVVQLESASERIF-YIYQTLHDCE--KALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDLHT 440 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~-~l~~~l~~~~--~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~ 440 (574)
++.++++|+++.+....+.+. .++|+++.+. ..+.++... ......+.+++..++++.+.+.++| ++|++
T Consensus 642 ~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~~ 720 (861)
T TIGR00392 642 DPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYNF 720 (861)
T ss_pred CCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhccH
Confidence 999999999999988776554 4555666554 333222110 1112346788999999999999999 89999
Q ss_pred HHHHHHHHHHHHH--HHHHHHhhhc--ch---hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 441 TVVLAALSDPLKT--INDLLHTRKG--KK---QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 441 ~~al~~l~~l~~~--~N~~~~~~~~--~~---~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+.|++.|++++.. .|.|++..+. +. ..........+..+++.++.+| +|+|+.++++|+.+.
T Consensus 721 ~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~ 790 (861)
T TIGR00392 721 HKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLP 790 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcc
Confidence 9999999999875 7999987653 21 1111233344556666677777 899999999999885
No 44
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.8e-39 Score=380.04 Aligned_cols=404 Identities=17% Similarity=0.204 Sum_probs=295.2
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH-----cCCC------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE-----LGED------------ 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~-----~g~~------------ 158 (574)
+..|....|+|+|.+||||++++++.|+++||.||+||+|.++.|+|.||.++..++++ .|.+
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~ 208 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSE 208 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHH
Confidence 35666667888899999999999999999999999999999999999999999887754 3554
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCC-ccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cc--
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSV-EPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EY-- 225 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~-~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~y-- 225 (574)
+++++++|...+.+.+++||+.. |+ .++.| +|...++.+|.+|+++|++|++...|+||+.|-. .|
T Consensus 209 ~~~~~~~~~~~~~~q~~~lG~s~-Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d 287 (1066)
T PLN02381 209 VWKWKDEYGGTILNQLRRLGASL-DWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYID 287 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHhCchh-ccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhc
Confidence 35889999999999999999973 32 22222 7999999999999999999999999999987521 00
Q ss_pred ------------------cc-------ccCc---------cc-------------cccc----CCC--------------
Q 008191 226 ------------------GQ-------LSGR---------KL-------------EDNR----AGE-------------- 240 (574)
Q Consensus 226 ------------------g~-------Ls~~---------~~-------------~~~~----~g~-------------- 240 (574)
|. +.+. .+ ++.+ .|.
T Consensus 288 ~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi 367 (1066)
T PLN02381 288 IKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPII 367 (1066)
T ss_pred cccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEE
Confidence 10 0000 00 0000 010
Q ss_pred ----ccccC--------CCccCccchhhcccc------------------------------------------------
Q 008191 241 ----RVAVD--------SRKKNPADFALWKSA------------------------------------------------ 260 (574)
Q Consensus 241 ----~v~~~--------~~k~~~~Df~lwk~~------------------------------------------------ 260 (574)
.|+.+ ...+++.||..++..
T Consensus 368 ~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~ 447 (1066)
T PLN02381 368 CDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAK 447 (1066)
T ss_pred ECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecce
Confidence 01000 001222344333210
Q ss_pred ------------------------------------------cCCC-------------------Cccc----cCCcCcC
Q 008191 261 ------------------------------------------KEGE-------------------PFWE----SPWGPGR 275 (574)
Q Consensus 261 ------------------------------------------~~g~-------------------~~w~----~~WG~g~ 275 (574)
..+. ..|. .-||.+.
T Consensus 448 ~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pI 527 (1066)
T PLN02381 448 NNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRI 527 (1066)
T ss_pred eeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCcc
Confidence 0011 1121 2499999
Q ss_pred CCCccc--------hh--------H--------------------HH----------------HhhhC-----------C
Q 008191 276 PGWHIE--------CS--------A--------------------MS----------------AAYLG-----------H 292 (574)
Q Consensus 276 PgWhie--------cs--------a--------------------m~----------------~~~lG-----------~ 292 (574)
|-|++. |. + |. ...+| +
T Consensus 528 Piw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~ 607 (1066)
T PLN02381 528 PAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFY 607 (1066)
T ss_pred ceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccC
Confidence 999862 00 0 10 01134 3
Q ss_pred CceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhh---------------
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME--------------- 355 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~--------------- 355 (574)
|.|+...|.|++|++....+.++.++.++ ||.++++ ||||+. +|+|||||+||+|+|.++++
T Consensus 608 P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~-hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~ 686 (1066)
T PLN02381 608 PTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 686 (1066)
T ss_pred CCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHhee-cceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccc
Confidence 67889999999999988888888877765 7777855 599996 89999999999999999998
Q ss_pred ----------------------ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhh---
Q 008191 356 ----------------------LYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSL-LDA--- 408 (574)
Q Consensus 356 ----------------------~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~-~~~--- 408 (574)
+||+|+||||+++. ...++++|+.+.+...++.+.+|||+++.+...+.. +..
T Consensus 687 ~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~ 766 (1066)
T PLN02381 687 LDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPAT 766 (1066)
T ss_pred cchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccc
Confidence 79999999999986 678899999999998899999999998876544321 100
Q ss_pred --hhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH--HHHHHHHHHhhhcch-------hhhhHHHHHHHH
Q 008191 409 --AALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDP--LKTINDLLHTRKGKK-------QAMRLESLAALE 477 (574)
Q Consensus 409 --~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l--~~~~N~~~~~~~~~~-------~~~~~~~l~~~~ 477 (574)
.......++|++..++.+...+.++| ++|+++.|++.|++| ...+|.|++..+... ...+......+.
T Consensus 767 ~~~~~~~~~DrWILskL~~~i~~v~~~~-e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~ 845 (1066)
T PLN02381 767 LSVETMPFSCKWILSVLNKAISKTVSSL-DAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLW 845 (1066)
T ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHH
Confidence 01112457899999999999999999 999999999999999 567899999887421 112333344556
Q ss_pred HHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 478 KTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 478 ~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.+|..++.+| +|+|+.++++|+.+.
T Consensus 846 ~vL~~llrLL~PfmPfitEELw~~L~ 871 (1066)
T PLN02381 846 ICLDTGLRLLHPFMPFVTEELWQRLP 871 (1066)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhh
Confidence 6777778887 899999999999985
No 45
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-39 Score=379.04 Aligned_cols=207 Identities=19% Similarity=0.159 Sum_probs=164.8
Q ss_pred CCceeeeccccccC--ccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhh
Q 008191 292 HSFDIHGGGMDLVF--PHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367 (574)
Q Consensus 292 ~~~dih~~G~Dl~f--pH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll 367 (574)
+|.|+|+.|+|+++ ||. -..++.++.+. |+.++++| ||++. +|+|||||+||+|+|.+++++||+|+||||++
T Consensus 582 ~PaD~~~eG~Di~rgWF~s--~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~ll 658 (961)
T PRK13804 582 WPADLYLEGSDQHRGWFNS--SLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVA 658 (961)
T ss_pred CCceEEEEEcccccHHHHH--HHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHH
Confidence 46889999999997 555 45566666665 66888775 99987 99999999999999999999999999999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccCCHH
Q 008191 368 GTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDLHTT 441 (574)
Q Consensus 368 ~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~ 441 (574)
+.++++|++|+++.+.+..+.+.+|+|+++.+...+..+... ......+++++..++++.+.+.++| ++|+++
T Consensus 659 s~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~ 737 (961)
T PRK13804 659 SVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFK 737 (961)
T ss_pred hCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 989999999999999998888888999887665544432111 1112346889999999999999999 999999
Q ss_pred HHHHHHHHHH-H-HHHHHHHhhhcc------hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 442 VVLAALSDPL-K-TINDLLHTRKGK------KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 442 ~al~~l~~l~-~-~~N~~~~~~~~~------~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+|++.+++++ . ..|.|++..+.+ ....+......+..+++.++.+| +|+|+.++++|+.+.
T Consensus 738 ~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~ 807 (961)
T PRK13804 738 RIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRY 807 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcc
Confidence 9999999999 4 469999877632 11123333344555666677777 899999999999986
No 46
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=381.20 Aligned_cols=405 Identities=17% Similarity=0.172 Sum_probs=293.1
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHH-----HHcCCCh----------
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARA-----NELGEDP---------- 159 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A-----~~~g~~~---------- 159 (574)
++..+....|+|+|.+||||++++++.|+++||.|++|++|.++.|+|.||..+.... .+.|.++
T Consensus 60 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~ 139 (995)
T PTZ00419 60 KKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLK 139 (995)
T ss_pred CeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHH
Confidence 3456666778888999999999999999999999999999999999999998774332 3445543
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCCCCC--ccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCC---------
Q 008191 160 --ISLSRRYCEEFHQDMVDLHCLPPSV--EPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPE--------- 224 (574)
Q Consensus 160 --~e~a~~~~~~f~~~l~~L~I~~~d~--~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~--------- 224 (574)
++++++|.+.+.++|++||+. .|+ ...|. +|...++++|.+|+++|++|++...|+||+.|-..
T Consensus 140 ~~~~w~~~~~~~~~~~~~~lG~~-~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~ 218 (995)
T PTZ00419 140 KVWEWKDKHGNNICNQLRRLGSS-LDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFE 218 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHhCce-eeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccc
Confidence 578999999999999999997 342 22332 68899999999999999999999999999886210
Q ss_pred ------------c------cc-------ccCcc---c--------------------cccc----CCC------------
Q 008191 225 ------------Y------GQ-------LSGRK---L--------------------EDNR----AGE------------ 240 (574)
Q Consensus 225 ------------y------g~-------Ls~~~---~--------------------~~~~----~g~------------ 240 (574)
| |. +.+.. + ++-+ .|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~i 298 (995)
T PTZ00419 219 EIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKI 298 (995)
T ss_pred cccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEE
Confidence 1 21 00000 0 0000 000
Q ss_pred -------ccccC--------CCccCccchhhccccc--------------------------------------------
Q 008191 241 -------RVAVD--------SRKKNPADFALWKSAK-------------------------------------------- 261 (574)
Q Consensus 241 -------~v~~~--------~~k~~~~Df~lwk~~~-------------------------------------------- 261 (574)
.|+.+ ...+++.||..++...
T Consensus 299 pii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~ 378 (995)
T PTZ00419 299 PIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRD 378 (995)
T ss_pred EEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEe
Confidence 11100 0012334554432100
Q ss_pred ------------------------------------------CC-------------------CCcc----ccCCcCcCC
Q 008191 262 ------------------------------------------EG-------------------EPFW----ESPWGPGRP 276 (574)
Q Consensus 262 ------------------------------------------~g-------------------~~~w----~~~WG~g~P 276 (574)
.+ ...| -..||.+.|
T Consensus 379 ~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP 458 (995)
T PTZ00419 379 KVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIP 458 (995)
T ss_pred eEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceee
Confidence 00 0112 135999999
Q ss_pred CCccc-hh--------------------------------------------------H-HHHhhhC-----------CC
Q 008191 277 GWHIE-CS--------------------------------------------------A-MSAAYLG-----------HS 293 (574)
Q Consensus 277 gWhie-cs--------------------------------------------------a-m~~~~lG-----------~~ 293 (574)
.|+++ |. + +-...+| +|
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P 538 (995)
T PTZ00419 459 AYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFP 538 (995)
T ss_pred EEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCC
Confidence 88642 10 0 0001234 26
Q ss_pred ceeeeccccccCccchHHHHHHhhccCCC-CceEEEEeeEEEe-CCcccccccCceeehhhhhh----------------
Q 008191 294 FDIHGGGMDLVFPHHENEIAQSCAACNNS-HISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME---------------- 355 (574)
Q Consensus 294 ~dih~~G~Dl~fpH~~~~~A~~~a~~~~~-~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~---------------- 355 (574)
.|+++.|+|++|++....++++.++.++. +.++++ ||+|.. +|+|||||+||+|+|.++++
T Consensus 539 ~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~-HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~ 617 (995)
T PTZ00419 539 TSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFL-HAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNL 617 (995)
T ss_pred CcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhc-cceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhcccc
Confidence 78999999999987777777777777664 467755 699997 89999999999999999999
Q ss_pred ---------------------ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----
Q 008191 356 ---------------------LYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAA---- 409 (574)
Q Consensus 356 ---------------------~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~---- 409 (574)
+||+|++|||+++. +..+|++|+.+.+...++.+.+++|+++++...+......
T Consensus 618 ~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~ 697 (995)
T PTZ00419 618 PEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNST 697 (995)
T ss_pred chhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 89999999999986 7899999999999988888889999888765544322110
Q ss_pred -------hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH--HHHHHHHHHhhhcch----h-hhhHHHHHH
Q 008191 410 -------ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDP--LKTINDLLHTRKGKK----Q-AMRLESLAA 475 (574)
Q Consensus 410 -------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l--~~~~N~~~~~~~~~~----~-~~~~~~l~~ 475 (574)
......+.+++..++++.+.+.++| ++|+++.|++.+++| ...+|.|++..+++. . ..+......
T Consensus 698 ~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~-e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~ 776 (995)
T PTZ00419 698 LFKPNNVESLPWEDKWILHRLNVAIKEVTEGF-KEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDV 776 (995)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHH
Confidence 0112346889999999999999999 899999999999997 467899999877432 1 113334456
Q ss_pred HHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 476 LEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 476 ~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+..+|+.++.+| +|+|+.++++|+.+.
T Consensus 777 L~~vL~~~l~LL~PfmPfitEElw~~L~ 804 (995)
T PTZ00419 777 LHTVLDIGLRLLHPMMPFITEELYQRLP 804 (995)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhh
Confidence 667778888888 899999999999985
No 47
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-38 Score=370.20 Aligned_cols=199 Identities=19% Similarity=0.212 Sum_probs=165.6
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT- 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~- 369 (574)
+|.|+|++|+|++++|+.+++.++.++.+. ++++.+++||||+.+|+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~ 608 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSA 608 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCC
Confidence 367999999999999999999888888764 554566889999999999999999999999999999999999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHH-
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALS- 448 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~- 448 (574)
++.+|++|+++.+..+.+.+.++++++..+..... .......+++++..++++.+.+.++| ++|+++.|+..++
T Consensus 609 ~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~----~~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~i~~ 683 (897)
T PRK12300 609 ELLQDADWREKEVESVRRQLERFYELAKELIEIGG----EEELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQEAFY 683 (897)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC----ccccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 99999999999999999999888887765432111 01123457899999999999999999 9999999998875
Q ss_pred HHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 449 DPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 449 ~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.+.+.+|.|++..+. .....+..++..++.+| +|+|+.++++|+.|+
T Consensus 684 ~l~~~~n~Yi~~~k~-------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~ 731 (897)
T PRK12300 684 ELLNDLRWYLRRVGE-------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLG 731 (897)
T ss_pred HHHHHHHHHHHhcch-------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcC
Confidence 777899999976542 22344556667777777 899999999999875
No 48
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.6e-39 Score=369.45 Aligned_cols=390 Identities=18% Similarity=0.216 Sum_probs=275.0
Q ss_pred CceeEEE--cCCCCCCc-CcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008191 95 GKVGMYV--CGVTPYDL-SHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFH 171 (574)
Q Consensus 95 ~~v~~y~--cgpt~yg~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~ 171 (574)
++.++|+ ..|.|+|. +||||+++++++|+++||+||+||+|.|++|+|.||.+|+.+|.+.|..|.++++++++.|+
T Consensus 108 ~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~ 187 (963)
T PLN02563 108 SKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFR 187 (963)
T ss_pred CCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHH
Confidence 4444554 45777796 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCC--Cccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCC-------------CCcccc------
Q 008191 172 QDMVDLHCLPPS--VEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF-------------PEYGQL------ 228 (574)
Q Consensus 172 ~~l~~L~I~~~d--~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~-------------~~yg~L------ 228 (574)
+.|++||+. .| .+.+++ +|...++.+|.+|+++|++|++...|+||+.|. ..||..
T Consensus 188 ~q~~~lG~s-~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~ 266 (963)
T PLN02563 188 SQLKSLGFS-YDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPM 266 (963)
T ss_pred HHHHHhCcE-eeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEec
Confidence 999999997 44 344554 799999999999999999999999999998762 122210
Q ss_pred -----------------------------------------------cC-------ccc--------------------c
Q 008191 229 -----------------------------------------------SG-------RKL--------------------E 234 (574)
Q Consensus 229 -----------------------------------------------s~-------~~~--------------------~ 234 (574)
.+ ..+ +
T Consensus 267 ~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~ 346 (963)
T PLN02563 267 RQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPE 346 (963)
T ss_pred ceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCC
Confidence 00 000 0
Q ss_pred c-----c---c-------------------------------CCCcc-----------------ccC--------CCccC
Q 008191 235 D-----N---R-------------------------------AGERV-----------------AVD--------SRKKN 250 (574)
Q Consensus 235 ~-----~---~-------------------------------~g~~v-----------------~~~--------~~k~~ 250 (574)
. + . .|..+ ..+ ...++
T Consensus 347 ~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd 426 (963)
T PLN02563 347 HPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHD 426 (963)
T ss_pred ChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCC
Confidence 0 0 0 00000 000 00011
Q ss_pred ccchhhccccc-----------------------CC-----------------------------------------CCc
Q 008191 251 PADFALWKSAK-----------------------EG-----------------------------------------EPF 266 (574)
Q Consensus 251 ~~Df~lwk~~~-----------------------~g-----------------------------------------~~~ 266 (574)
+.||..++... .| ...
T Consensus 427 ~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrD 506 (963)
T PLN02563 427 TRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRD 506 (963)
T ss_pred HHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCC
Confidence 23444333210 00 011
Q ss_pred cc----cCCcCcCCCCccc-hh------H------H--------------------------------------------
Q 008191 267 WE----SPWGPGRPGWHIE-CS------A------M-------------------------------------------- 285 (574)
Q Consensus 267 w~----~~WG~g~PgWhie-cs------a------m-------------------------------------------- 285 (574)
|. .-||.+.|-||++ |. . +
T Consensus 507 W~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw 586 (963)
T PLN02563 507 WLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQW 586 (963)
T ss_pred ceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCch
Confidence 21 2488888888753 32 0 0
Q ss_pred ------HHhhh----------------CCCceeeeccccccC-------ccchHHHHHHhhccCCCCceEEEEeeEEE--
Q 008191 286 ------SAAYL----------------GHSFDIHGGGMDLVF-------PHHENEIAQSCAACNNSHISYWIHNGFVT-- 334 (574)
Q Consensus 286 ------~~~~l----------------G~~~dih~~G~Dl~f-------pH~~~~~A~~~a~~~~~~~~~~~h~g~v~-- 334 (574)
...|. -.|+|+.++|.||.- |+|-.-..+....+..|+.++ +.+|||+
T Consensus 587 ~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~l-l~qGmVl~~ 665 (963)
T PLN02563 587 AGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCL-VNQGMILGE 665 (963)
T ss_pred hhccHHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHH-hccceeecC
Confidence 00000 136889999999953 333222222222224577777 5579997
Q ss_pred --------eCCc---------------------------------------------ccccccCceeehhhhhhccChhh
Q 008191 335 --------IDSE---------------------------------------------KMSKSLGNFFTIRQVMELYHPLA 361 (574)
Q Consensus 335 --------~~G~---------------------------------------------KMSKS~Gn~i~~~d~l~~~~~d~ 361 (574)
.+|+ |||||+||+|+|.+++++||+|+
T Consensus 666 ~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADa 745 (963)
T PLN02563 666 VEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADS 745 (963)
T ss_pred ccccceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHH
Confidence 3455 99999999999999999999999
Q ss_pred HHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--cCCCCChhHHHHHHHHHHHHHHHHHccC
Q 008191 362 LRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAA--LKDSIPPDTVTSINKFHNDFLASMSDDL 438 (574)
Q Consensus 362 lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~am~dd~ 438 (574)
+|||++.. +..++++|+.+.+....+.+.++|+.+.........+.... .....+.+++..++++.+.+.++| ++|
T Consensus 746 LRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~-e~y 824 (963)
T PLN02563 746 LRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEI-EST 824 (963)
T ss_pred HHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHH-HcC
Confidence 99999986 88899999999999999999999987654311000010000 011346788999999999999999 899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 439 HTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 439 n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+++.|++.|++|+..++++- . ....++..++.+| +|+|+.+|++|+.|.
T Consensus 825 ~FntAi~~lmef~n~l~~~~-------~--------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg 874 (963)
T PLN02563 825 RFNTAISAMMEFTNAAYKWD-------K--------VPREAIEPFVLLLSPYAPHLAEELWFRLG 874 (963)
T ss_pred CHHHHHHHHHHHHHHHhCch-------H--------HHHHHHHHHHHHHHhhhhhHHHHHHHHcC
Confidence 99999999999998775421 0 1234566667777 899999999999884
No 49
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=4.6e-37 Score=360.61 Aligned_cols=209 Identities=17% Similarity=0.201 Sum_probs=169.2
Q ss_pred CceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhcc-
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT- 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~- 369 (574)
|.|+..-|.|++|+|....+.++.+++++ |+.++.+ ||||+. +|+|||||+||+|+|.+++++||+|+||||+++.
T Consensus 673 PaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~Vlv-HG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~ 751 (1205)
T PTZ00427 673 PADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLIC-NGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSV 751 (1205)
T ss_pred CceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEE-ccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcC
Confidence 57888999999999999999999999887 5577755 699997 9999999999999999999999999999999986
Q ss_pred CC-CCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh-------------hhcCCCCChhHHHHHHHHHHHHHHHH
Q 008191 370 HY-RSPINYSVVQLESA-SERIFYIYQTLHDCEKALSLLDA-------------AALKDSIPPDTVTSINKFHNDFLASM 434 (574)
Q Consensus 370 ~~-~~~~~fs~~~l~~a-~~~l~~l~~~l~~~~~~l~~~~~-------------~~~~~~~~~~l~~~l~~~~~~~~~am 434 (574)
.. .++++|+++.+.+. .+.+.++|+..+.+...+..+.. .......++|++..++++.+.+.++|
T Consensus 752 ~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~m 831 (1205)
T PTZ00427 752 AVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEM 831 (1205)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 43 79999999999765 45577888887766543332110 01123357899999999999999999
Q ss_pred HccCCHHHHHHHHHHHHH-HHHHHHHhhhc--c---hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHH
Q 008191 435 SDDLHTTVVLAALSDPLK-TINDLLHTRKG--K---KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 435 ~dd~n~~~al~~l~~l~~-~~N~~~~~~~~--~---~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~ 503 (574)
++|+++.|+..|++|+. .+|.|++..+. + ....+..++..+..+|..++.+| +|+|+.++++|+.|..
T Consensus 832 -e~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 832 -KAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred -HccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 99999999999999997 56889886552 1 12233455667778888888888 8999999999999853
No 50
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-36 Score=335.31 Aligned_cols=404 Identities=21% Similarity=0.263 Sum_probs=287.4
Q ss_pred CCccccccCCC-Cc-eeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCCh
Q 008191 84 RKRELVKPKVE-GK-VGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDP 159 (574)
Q Consensus 84 ~~~~~f~p~~~-~~-v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~ 159 (574)
.+...|++..+ ++ -++|++-|-|| |.+|+||.|+|+++|+++||.||+||+|.|.+|+|-.|.++++.|.+.|.+|
T Consensus 19 ~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P 98 (814)
T COG0495 19 EEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDP 98 (814)
T ss_pred HhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCCh
Confidence 34566776443 33 38888887777 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCc--cccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC------------
Q 008191 160 ISLSRRYCEEFHQDMVDLHCLPPSVE--PRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP------------ 223 (574)
Q Consensus 160 ~e~a~~~~~~f~~~l~~L~I~~~d~~--~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~------------ 223 (574)
..+++.+++.|+++|++||.+ .|+- ..++ +|...++.+|.+|.++|++|.++..|.||+.+..
T Consensus 99 ~~wt~~ni~~~k~qlk~lG~s-iDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~ 177 (814)
T COG0495 99 AKWTYYNIAYMKKQLKSLGFS-IDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGC 177 (814)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-cccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCc
Confidence 999999999999999999997 4432 1112 7999999999999999999999999999987521
Q ss_pred -Cccc---------------------------ccCcccc-------------------cccCCC----------------
Q 008191 224 -EYGQ---------------------------LSGRKLE-------------------DNRAGE---------------- 240 (574)
Q Consensus 224 -~yg~---------------------------Ls~~~~~-------------------~~~~g~---------------- 240 (574)
.||. |.+.-++ ....|.
T Consensus 178 ~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~ 257 (814)
T COG0495 178 WRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTL 257 (814)
T ss_pred ccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccc
Confidence 2221 0000000 000000
Q ss_pred ---c----------------------------------c-------------ccCCCccCc-------------------
Q 008191 241 ---R----------------------------------V-------------AVDSRKKNP------------------- 251 (574)
Q Consensus 241 ---~----------------------------------v-------------~~~~~k~~~------------------- 251 (574)
+ + ....+..||
T Consensus 258 ~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~yg 337 (814)
T COG0495 258 FGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYG 337 (814)
T ss_pred cCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCccccccc
Confidence 0 0 000000000
Q ss_pred ------------cchhhcccc---------cC-----------------------------------------C------
Q 008191 252 ------------ADFALWKSA---------KE-----------------------------------------G------ 263 (574)
Q Consensus 252 ------------~Df~lwk~~---------~~-----------------------------------------g------ 263 (574)
+||...+.. .. |
T Consensus 338 tgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y 417 (814)
T COG0495 338 TGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNY 417 (814)
T ss_pred ccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchhHHHHHHHHhHHHhcCCceEEec
Confidence 122211100 00 0
Q ss_pred -CCcc-c---cCCcCcCC--------------------------------------CCcc-chh---------HHH----
Q 008191 264 -EPFW-E---SPWGPGRP--------------------------------------GWHI-ECS---------AMS---- 286 (574)
Q Consensus 264 -~~~w-~---~~WG~g~P--------------------------------------gWhi-ecs---------am~---- 286 (574)
...| . ..||.+.| .|-+ .|+ .|.
T Consensus 418 ~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~ 497 (814)
T COG0495 418 RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFID 497 (814)
T ss_pred ccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhcc
Confidence 0122 0 12333332 1422 341 111
Q ss_pred -----Hhh-----hC------------CCceeeeccccccCccchHHHHHHhhccC-------CCCceEEEEeeEEEe-C
Q 008191 287 -----AAY-----LG------------HSFDIHGGGMDLVFPHHENEIAQSCAACN-------NSHISYWIHNGFVTI-D 336 (574)
Q Consensus 287 -----~~~-----lG------------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~-------~~~~~~~~h~g~v~~-~ 336 (574)
.+| .| .|+|+.+||+||+--|..+.+-...++.. +|+.+. +.+|||+. +
T Consensus 498 sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L-~~qGmVl~~~ 576 (814)
T COG0495 498 SSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKL-ITQGMVLGEE 576 (814)
T ss_pred cccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhh-hccceEEecC
Confidence 011 21 27899999999999999999998888863 355556 77999999 7
Q ss_pred CcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 008191 337 SEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSI 415 (574)
Q Consensus 337 G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~ 415 (574)
|+|||||+||+|+|++++++||+|++|+|++.. +..++++|+++.++.+.+.|.|+++.+.......... ....
T Consensus 577 g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-----~~~~ 651 (814)
T COG0495 577 GEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-----LTKE 651 (814)
T ss_pred CCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-----ccch
Confidence 999999999999999999999999999999996 8999999999999999999999998776554321000 0111
Q ss_pred C-hhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-cccccc
Q 008191 416 P-PDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTG 493 (574)
Q Consensus 416 ~-~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~ 493 (574)
. ..+...++++.+.+.+.++..+.+..|++.+++|++.+.+|....... ..+ +...+..+..+| +|.|+.
T Consensus 652 ~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~~-----~~~---l~~~l~~~v~lLaP~aPH~ 723 (814)
T COG0495 652 QGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEGD-----RKV---LREALETWVRLLAPFAPHI 723 (814)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-----HHH---HHHHHHHHHHHhcccccHH
Confidence 1 344556777888888888333899999999999999999887654321 122 334555566666 899999
Q ss_pred HHHHHHHHH
Q 008191 494 YSEVLLQLR 502 (574)
Q Consensus 494 ~~~i~~~l~ 502 (574)
+||+|+.+.
T Consensus 724 aEElW~~lg 732 (814)
T COG0495 724 AEELWEELG 732 (814)
T ss_pred HHHHHHHhc
Confidence 999999886
No 51
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=1.8e-35 Score=328.84 Aligned_cols=367 Identities=19% Similarity=0.171 Sum_probs=269.4
Q ss_pred ccCCCccccccCC--CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHH---HH-
Q 008191 81 TMSRKRELVKPKV--EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARA---NE- 154 (574)
Q Consensus 81 tl~~~~~~f~p~~--~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A---~~- 154 (574)
+..+.++.|-+.. +.+|.++.|||||+|++||||+|+++++|+|+|+|++.||+|....+++|+|.++-.-+ .+
T Consensus 96 ~~~~~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~ 175 (566)
T TIGR00456 96 KILTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKF 175 (566)
T ss_pred HHHhcccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHh
Confidence 3344556665433 34899999999999999999999999999999999999999999999999986542211 00
Q ss_pred ---------------------------------------------cCCC-----hHHHHHHHHHHHHHHHHhcCCCCCCC
Q 008191 155 ---------------------------------------------LGED-----PISLSRRYCEEFHQDMVDLHCLPPSV 184 (574)
Q Consensus 155 ---------------------------------------------~g~~-----~~e~a~~~~~~f~~~l~~L~I~~~d~ 184 (574)
.|.+ ++.+++...+.|+++|++|||. +|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~-fD~ 254 (566)
T TIGR00456 176 GNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIH-FDS 254 (566)
T ss_pred CCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCc-eee
Confidence 0111 2456677889999999999996 676
Q ss_pred cccc--cccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc-cCcccccccCCCccccCCCccCccchh--hccc
Q 008191 185 EPRV--SDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL-SGRKLEDNRAGERVAVDSRKKNPADFA--LWKS 259 (574)
Q Consensus 185 ~~r~--s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L-s~~~~~~~~~g~~v~~~~~k~~~~Df~--lwk~ 259 (574)
+... +.+.+.+.+++++|.++|++|+. |.+|++++. +|.. ..+.+. ..+|+..... .|.+ +||.
T Consensus 255 ~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~---~~d~~~~~vl~-ksDGt~~Y~t------~DiA~~~~k~ 323 (566)
T TIGR00456 255 FVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTL---FGDKDKDRVLQ-KSDGTYLYLT------RDIAYHLDKL 323 (566)
T ss_pred eeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEccc---ccCCCCCeEEE-ECCCCceech------hhHHHHHHHH
Confidence 6533 34556788999999999999987 999987643 3311 011111 1233332211 1332 2221
Q ss_pred ccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcc
Q 008191 260 AKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEK 339 (574)
Q Consensus 260 ~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~K 339 (574)
. -|....|.+.|.|+. .|...-.+.+++++..++.++ .|++|.+++|.|
T Consensus 324 ~-----------------------------~~~d~iI~V~g~~q~-~h~~~v~~~l~~lG~~~~~~l-~h~~~~~V~~~k 372 (566)
T TIGR00456 324 E-----------------------------RGFDKMIYVWGSDHH-LHIAQFFAILEKLGFYKKKEL-IHLNFGMVPLGS 372 (566)
T ss_pred h-----------------------------cCCCEEEEEecCcHH-HHHHHHHHHHHHcCCCCCCce-EEEEEEEEECCC
Confidence 1 144567888999954 122223356666665555555 788999999999
Q ss_pred cccccCceeehh-----------------------hhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHH-HHHHH
Q 008191 340 MSKSLGNFFTIR-----------------------QVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIF-YIYQT 395 (574)
Q Consensus 340 MSKS~Gn~i~~~-----------------------d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~-~l~~~ 395 (574)
||||+||+|+++ ++++.+|.|++||++|+....++++|+++.+.+.....+ ++.++
T Consensus 373 mSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa 452 (566)
T TIGR00456 373 MKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYA 452 (566)
T ss_pred CCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHH
Confidence 999999999998 677778999999999999889999999998877654333 67777
Q ss_pred HHHHHHHHhhhhhhhc---------CCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc--
Q 008191 396 LHDCEKALSLLDAAAL---------KDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK-- 464 (574)
Q Consensus 396 l~~~~~~l~~~~~~~~---------~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~-- 464 (574)
..|+.+.+.++..... .++.+..++..+.++++.+.++| ++++++.++.+++++++.+|+|++.++..
T Consensus 453 ~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~l~~La~~~N~yy~~~~Vl~~ 531 (566)
T TIGR00456 453 HARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNYLYELASLFSSFYKACPVLDA 531 (566)
T ss_pred HHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 7777777766421110 01223567788889999999999 99999999999999999999999877632
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHhhhcccc
Q 008191 465 ----KQAMRLESLAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 465 ----~~~~~~~~l~~~~~~l~~~l~iLGi~p 491 (574)
....|+.++.++..+|...|.+|||.+
T Consensus 532 ~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~ 562 (566)
T TIGR00456 532 ENENLAAARLALLKATRQTLKNGLQLLGIEP 562 (566)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 124788999999999999999999976
No 52
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-35 Score=334.52 Aligned_cols=408 Identities=21% Similarity=0.249 Sum_probs=296.0
Q ss_pred CceeEEEcC-CCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CC---------------
Q 008191 95 GKVGMYVCG-VTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GE--------------- 157 (574)
Q Consensus 95 ~~v~~y~cg-pt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~--------------- 157 (574)
++.-++.-| |..+|.+|||||-+-++-|++.||..|+||+|.++.|+|.||.+|+.++++. |.
T Consensus 48 ~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~ 127 (933)
T COG0060 48 KPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFRE 127 (933)
T ss_pred CCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHH
Confidence 344455555 5555999999999999999999999999999999999999999999777653 41
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCCccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cccc
Q 008191 158 DPISLSRRYCEEFHQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQ 227 (574)
Q Consensus 158 ~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~ 227 (574)
.++++|.+|.+..++++++||+...---|..| ++++.+..++.++.+||++|++...||||+.|.. .|+.
T Consensus 128 ~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d 207 (933)
T COG0060 128 KCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGD 207 (933)
T ss_pred HHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccc
Confidence 24788899999999999999997433345555 6889999999999999999999999999998732 2211
Q ss_pred -----------cc------C------------------------------------------------------------
Q 008191 228 -----------LS------G------------------------------------------------------------ 230 (574)
Q Consensus 228 -----------Ls------~------------------------------------------------------------ 230 (574)
+. +
T Consensus 208 ~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~ 287 (933)
T COG0060 208 VKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLE 287 (933)
T ss_pred cCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeE
Confidence 00 0
Q ss_pred ----cccccc-----------------cCCCccccCC--------CccCccchhhcc-----------------------
Q 008191 231 ----RKLEDN-----------------RAGERVAVDS--------RKKNPADFALWK----------------------- 258 (574)
Q Consensus 231 ----~~~~~~-----------------~~g~~v~~~~--------~k~~~~Df~lwk----------------------- 258 (574)
..++.+ ..|+.|..+. ......||.+++
T Consensus 288 ~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~ 367 (933)
T COG0060 288 TFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPK 367 (933)
T ss_pred EeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchh
Confidence 000000 0000000000 000001222221
Q ss_pred --------------------------------------cccC--------------------------------------
Q 008191 259 --------------------------------------SAKE-------------------------------------- 262 (574)
Q Consensus 259 --------------------------------------~~~~-------------------------------------- 262 (574)
..+|
T Consensus 368 ~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~~~R~ 447 (933)
T COG0060 368 YEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGKNRF 447 (933)
T ss_pred hCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhHHHHH
Confidence 1000
Q ss_pred -----CCCccc----cCCcCcCCCCcc-chhH----------HHH-----------------hhh------C--------
Q 008191 263 -----GEPFWE----SPWGPGRPGWHI-ECSA----------MSA-----------------AYL------G-------- 291 (574)
Q Consensus 263 -----g~~~w~----~~WG~g~PgWhi-ecsa----------m~~-----------------~~l------G-------- 291 (574)
+.+.|. .-||.+.|-|.. +|.. ++. +.+ |
T Consensus 448 ~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~D 527 (933)
T COG0060 448 GNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPD 527 (933)
T ss_pred HHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCc
Confidence 112232 349999998854 3310 000 000 0
Q ss_pred -----------------------CCc---eeeeccccccCccchHHHHHHhhccCCC-CceEEEEeeEEEe-CCcccccc
Q 008191 292 -----------------------HSF---DIHGGGMDLVFPHHENEIAQSCAACNNS-HISYWIHNGFVTI-DSEKMSKS 343 (574)
Q Consensus 292 -----------------------~~~---dih~~G~Dl~fpH~~~~~A~~~a~~~~~-~~~~~~h~g~v~~-~G~KMSKS 343 (574)
.+. |+..-|.|+.+-+.---...+.|+.+++ +.++ +.|||++. +|+|||||
T Consensus 528 vlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~v-ltHGfvlDe~GrKMSKS 606 (933)
T COG0060 528 VLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNV-LTHGFVLDEKGRKMSKS 606 (933)
T ss_pred ceEEEEcCCCCcccccCCcccccCccccCcEEEEeccccchhHHHHHHHHHHHcCCchHHHH-hhcccEECCCCCCcccc
Confidence 122 6777788887776666677778888874 4555 55799987 79999999
Q ss_pred cCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------cCCCCCh
Q 008191 344 LGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAA------LKDSIPP 417 (574)
Q Consensus 344 ~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~------~~~~~~~ 417 (574)
+||+|+|.|++++||+|+||+|++++.|..++.||++.+++....+.+|+|+++.+..++..+.... ....+|+
T Consensus 607 lGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Dr 686 (933)
T COG0060 607 LGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDR 686 (933)
T ss_pred CCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHH
Confidence 9999999999999999999999999999999999999999999999999999999988877654221 2335689
Q ss_pred hHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH-HHH-HHHHHhhhc------chhhhhHHHHHHHHHHHHHHHhhh-c
Q 008191 418 DTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL-KTI-NDLLHTRKG------KKQAMRLESLAALEKTIRNVLTVL-G 488 (574)
Q Consensus 418 ~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~-~~~-N~~~~~~~~------~~~~~~~~~l~~~~~~l~~~l~iL-G 488 (574)
+++.+++.+.+.+.++| ++|++++++..|++|+ ..+ |.|++..+. .....|.+....+..+|..+..+| +
T Consensus 687 wil~rl~~l~~~v~eay-e~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAP 765 (933)
T COG0060 687 WILSRLNSLVKEVREAY-ENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAP 765 (933)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999 9999999999999999 555 556665551 223455666566667777777777 8
Q ss_pred cccccHHHHHHHHHHH
Q 008191 489 LMSTGYSEVLLQLREK 504 (574)
Q Consensus 489 i~p~~~~~i~~~l~~~ 504 (574)
|+|+++|++|+.+...
T Consensus 766 ilPftaEeiw~~l~~~ 781 (933)
T COG0060 766 ILPFTAEEIWQNLPGE 781 (933)
T ss_pred cchhhHHHHHHhCccC
Confidence 9999999999988543
No 53
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-35 Score=296.47 Aligned_cols=413 Identities=16% Similarity=0.152 Sum_probs=300.0
Q ss_pred cccccCCCCceeEEEcCCCCC--CcCcchhh-HHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHH
Q 008191 87 ELVKPKVEGKVGMYVCGVTPY--DLSHIGHA-RVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLS 163 (574)
Q Consensus 87 ~~f~p~~~~~v~~y~cgpt~y--g~~HiGHa-r~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a 163 (574)
.+.-|. +++-.+.++..-|| ..+|+||. ...+.|||++||.+.+|+...|++|+|++|.+++.+|.++|.+|++++
T Consensus 5 ~~ilp~-~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elc 83 (567)
T KOG1247|consen 5 DPILPA-PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELC 83 (567)
T ss_pred CCcccC-CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHH
Confidence 344443 35556666665555 99999995 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCc----
Q 008191 164 RRYCEEFHQDMVDLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEY---- 225 (574)
Q Consensus 164 ~~~~~~f~~~l~~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~y---- 225 (574)
++|...+...++-++|. .|.|-|+| .+-+..+.+|.+|.++|+.-+..-.+.||..| |+.|
T Consensus 84 dKyh~ihk~vy~Wf~Id-fD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ 162 (567)
T KOG1247|consen 84 DKYHGIHKVVYDWFKID-FDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDD 162 (567)
T ss_pred HhcchhHHHHHHhhccc-ccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCcc
Confidence 99999999999999996 89999987 56788899999999999988877778888654 4433
Q ss_pred ---------ccccCc----ccccccC--CCcc------ccCCC----------ccCc--cch--------hhccc--ccC
Q 008191 226 ---------GQLSGR----KLEDNRA--GERV------AVDSR----------KKNP--ADF--------ALWKS--AKE 262 (574)
Q Consensus 226 ---------g~Ls~~----~~~~~~~--g~~v------~~~~~----------k~~~--~Df--------~lwk~--~~~ 262 (574)
|++-+. +..++.+ +-.+ .++-. +++. .|+ .-|-+ -+|
T Consensus 163 ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~p 242 (567)
T KOG1247|consen 163 ARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKP 242 (567)
T ss_pred ccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccc
Confidence 332211 0011111 1100 00000 0000 010 01211 123
Q ss_pred CCCccccCCcCcCCC----------CccchhHHHH----------hhhCCCc---eeeeccccccCccchHHHHHHhhcc
Q 008191 263 GEPFWESPWGPGRPG----------WHIECSAMSA----------AYLGHSF---DIHGGGMDLVFPHHENEIAQSCAAC 319 (574)
Q Consensus 263 g~~~w~~~WG~g~Pg----------Whiecsam~~----------~~lG~~~---dih~~G~Dl~fpH~~~~~A~~~a~~ 319 (574)
..+++|..||.++|= |+.+...|.+ ++|..|- -.++.|+|++.||.+..|+...+.+
T Consensus 243 RCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~ 322 (567)
T KOG1247|consen 243 RCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTE 322 (567)
T ss_pred cccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCC
Confidence 346778999999992 8876543321 2333333 3789999999999999999888876
Q ss_pred CC-CCceEEEEeeEEEeCCcccccccCceeehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHHH
Q 008191 320 NN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT-HYRSPINYSVVQLESASER--IFYIYQ 394 (574)
Q Consensus 320 ~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~~ 394 (574)
.+ +..+.....++++.+..|+|||+|..|-..++.+ ..+++..|||||+. |..+|..|||+.+....|. +.+|-|
T Consensus 323 en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGN 402 (567)
T KOG1247|consen 323 ENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGN 402 (567)
T ss_pred CCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHH
Confidence 54 5566667789999999999999999999888876 58999999999997 8899999999999887763 445556
Q ss_pred HHHHHHHHHhhhhhh----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----h
Q 008191 395 TLHDCEKALSLLDAA----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----Q 466 (574)
Q Consensus 395 ~l~~~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~ 466 (574)
+++++..++.....+ -.....+..+++.++++.....++| +......|+..++++.+..|+|++.++..+ .
T Consensus 403 FvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~~~ 481 (567)
T KOG1247|consen 403 FVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKTAMEISRRGNQYLQENTDNKLYEES 481 (567)
T ss_pred HHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhcccccchhhhc
Confidence 665555554432111 1122346788999999999999999 999999999999999999999999875211 1
Q ss_pred hhhHHHHH-HHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 467 AMRLESLA-ALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 467 ~~~~~~l~-~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
..+...+- .....+..+..+| ++||..+.+|..++.
T Consensus 482 r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqln 519 (567)
T KOG1247|consen 482 RQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLN 519 (567)
T ss_pred ccccceeeehhhHHHHHHHHHhccccccchHHHHHHhC
Confidence 12222222 2233333344444 999999999988864
No 54
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.6e-33 Score=325.80 Aligned_cols=201 Identities=19% Similarity=0.150 Sum_probs=151.2
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT- 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~- 369 (574)
+|.|++..|+||+++|..+.+.++.++.++ ||.+.+++||||+.+|+|||||+||+|+|.|++++||+|++|||++..
T Consensus 670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~ 749 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAG 749 (1084)
T ss_pred CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcC
Confidence 478999999999999999999888888765 666656778999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHH
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSL---LDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAA 446 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~ 446 (574)
++.++.+|+++.+..+...+.++...+ ...+.. ..........|++++..++.+...+.++| ++++++.|++.
T Consensus 750 ~~~~D~nF~~k~~n~~~~~l~n~~~~~---~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~ 825 (1084)
T PLN02959 750 DGVDDANFVFETANAAILRLTKEIAWM---EEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKS 825 (1084)
T ss_pred CccCCCCccHHHHHHHHHHHHHHHHHH---HHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH
Confidence 888999999998876665554433322 222111 00111123457899999999999999999 99999999998
Q ss_pred H-HHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHH
Q 008191 447 L-SDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQL 501 (574)
Q Consensus 447 l-~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l 501 (574)
. ++|......|...... . . .....+..+|..++.+| +|+|+.+|++|+.+
T Consensus 826 ~~Yel~~~k~~yr~~~~~-~-~---~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l 877 (1084)
T PLN02959 826 GFYDLQAARDEYRLSCGS-G-G---MNRDLVWRFMDVQTRLITPICPHYAEHVWREI 877 (1084)
T ss_pred HHHHHHHhHHHHhhcccc-c-h---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 4 3444443333221110 0 0 11234556677777787 89999999999987
No 55
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.6e-33 Score=307.33 Aligned_cols=356 Identities=16% Similarity=0.130 Sum_probs=267.6
Q ss_pred CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHH---HHcCC-------------
Q 008191 94 EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARA---NELGE------------- 157 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A---~~~g~------------- 157 (574)
+++|.+..++|+|.|++||||+|+.+++|+|+|.|+..||+|....+++|+|.++-.-+ .+.|.
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELF 191 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHH
Confidence 56899999999999999999999999999999999999999999999999997653211 11110
Q ss_pred ------------------------------C------hHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHH
Q 008191 158 ------------------------------D------PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQ 201 (574)
Q Consensus 158 ------------------------------~------~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~ 201 (574)
+ ++.+++...+.|.++|++|||. +|.+...+.|.+.+.+++++
T Consensus 192 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~-fD~~~~es~~~~~~~~v~~~ 270 (562)
T PRK12451 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVE-FTNFQGEAFYNDLMEDFIGI 270 (562)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ceeecchHhhhhhHHHHHHH
Confidence 1 3455677788999999999997 67777777888888999999
Q ss_pred HHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh--hcccccCCCCccccCCcCcCCCCc
Q 008191 202 ILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA--LWKSAKEGEPFWESPWGPGRPGWH 279 (574)
Q Consensus 202 L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~--lwk~~~~g~~~w~~~WG~g~PgWh 279 (574)
|.++|++|+.+|.+|++.+. +|. .+. +-.-.+|+..... .|.+ .||..
T Consensus 271 L~~~g~~~e~dGa~~~~~~~---~g~-~~~-vl~ksDGt~~Y~t------~DiA~~~~k~~------------------- 320 (562)
T PRK12451 271 LEEHDLLEESEGALVVNLEE---EGM-PPC-LIRKSDGATIYAT------RDLTAALYRQN------------------- 320 (562)
T ss_pred HHHCCCEEecCCeEEEEecc---cCC-Cce-EEEeCCCccccch------hHHHHHHHHhh-------------------
Confidence 99999999999999987643 331 111 1111234433221 1332 23321
Q ss_pred cchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceE-EEEeeEEEeCCcccccccCceeehhhhhhc--
Q 008191 280 IECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISY-WIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-- 356 (574)
Q Consensus 280 iecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~-~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-- 356 (574)
.+|....|.+.|.|+. .|.-.-.+.+.+++..+..++ .+..|+|..+|+||||++||+|+++|++++
T Consensus 321 ---------~~~~d~~IyV~g~dq~-~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~ 390 (562)
T PRK12451 321 ---------TFGFDKALYVVGPEQS-LHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAI 390 (562)
T ss_pred ---------ccCCCEEEEEeCCcHH-HHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHH
Confidence 1345667889999954 122222245555553321111 133577888999999999999999999996
Q ss_pred -----------------------cChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhh-h-
Q 008191 357 -----------------------YHPLALRLFLIGTHYRSPINYSVVQLESASERIF-YIYQTLHDCEKALSLLDAA-A- 410 (574)
Q Consensus 357 -----------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~-~l~~~l~~~~~~l~~~~~~-~- 410 (574)
.+.+++||++|+....++++|+++.+.+....-+ +++++..|+.+++++.... .
T Consensus 391 ~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~~~~~ 470 (562)
T PRK12451 391 ELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESVEFET 470 (562)
T ss_pred HHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCCCccc
Confidence 6789999999999999999999999877764322 7788888888888775210 0
Q ss_pred ----cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc----hhhhhHHHHHHHHHHHHH
Q 008191 411 ----LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK----KQAMRLESLAALEKTIRN 482 (574)
Q Consensus 411 ----~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~----~~~~~~~~l~~~~~~l~~ 482 (574)
..++.+..++..+.++.+.+.++| ++++++.++.+++++++.+|+|++..+.- ....|+.++.++..+|..
T Consensus 471 ~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~yl~~LA~~fN~fy~~~~Vl~~~~~~~~RL~L~~a~~~vL~~ 549 (562)
T PRK12451 471 CTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKYVLDVAQSFNKYYGNVRILEESAEKDSRLALVYAVTVVLKE 549 (562)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 012334667888999999999999 99999999999999999999999876632 235788999999999999
Q ss_pred HHhhhcccc
Q 008191 483 VLTVLGLMS 491 (574)
Q Consensus 483 ~l~iLGi~p 491 (574)
.|.+|||.+
T Consensus 550 gL~LLGI~~ 558 (562)
T PRK12451 550 GLRLLGVEA 558 (562)
T ss_pred HHHhcCCCc
Confidence 999999976
No 56
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-33 Score=303.92 Aligned_cols=360 Identities=20% Similarity=0.186 Sum_probs=271.4
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHH-------H-----------
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARAN-------E----------- 154 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~-------~----------- 154 (574)
.+.+|.+..++|+|.||+||||+|+.|++|+|+|.|++.||+|....+++|+|.+|-.-+. +
T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 194 (577)
T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY 194 (577)
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchH
Confidence 3569999999999999999999999999999999999999999999999999976532110 0
Q ss_pred ---------------cCCC--------------------hHHHHHHHHHHHHHHHHhcCCCCCCCccccc--ccHHHHHH
Q 008191 155 ---------------LGED--------------------PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS--DHMPHIID 197 (574)
Q Consensus 155 ---------------~g~~--------------------~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s--~~~~~i~~ 197 (574)
.+.+ |+.+++.....|++++++|||. .|.+.-.+ .+-..+.+
T Consensus 195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~-fD~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVK-FDVYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcc-cceeeccchhhhcccHHH
Confidence 0100 1126777888999999999996 67775444 34456889
Q ss_pred HHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh--hcccccCCCCccccCCcCcC
Q 008191 198 MITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA--LWKSAKEGEPFWESPWGPGR 275 (574)
Q Consensus 198 ~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~--lwk~~~~g~~~w~~~WG~g~ 275 (574)
+++.|.++|++|+.+|..+.+..++..+|...++.+.. ++|+..... .|.+ +||..
T Consensus 274 vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~~~~vl~K-SDGt~lY~t------~DIAy~~~K~~--------------- 331 (577)
T COG0018 274 VVEDLEEKGLLYEDDGALVVDLLKFKKFGDDKDRVLQK-SDGTYLYFT------RDIAYHLYKFE--------------- 331 (577)
T ss_pred HHHHHHhcCCEeeeCCeEEEehhhhhhcCCCCCeEEEE-cCCCeeeeh------hHHHHHHHHHh---------------
Confidence 99999999999999999988877665556433332221 234433221 1332 22210
Q ss_pred CCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe---CCcccccccCceeehhh
Q 008191 276 PGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI---DSEKMSKSLGNFFTIRQ 352 (574)
Q Consensus 276 PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~---~G~KMSKS~Gn~i~~~d 352 (574)
.|....|.+.|.|+.- |....-+.+.+++..+...+.+|.++-++ +|.||||+.|++|+++|
T Consensus 332 --------------~~~d~~IyV~gadq~~-~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~d 396 (577)
T COG0018 332 --------------RGFDKLIYVLGADQHG-HFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDD 396 (577)
T ss_pred --------------cCCCEEEEEeCCcchh-HHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHH
Confidence 4566779999999541 11111233334444443346677777555 46799999999999999
Q ss_pred hhhccC----------------------hhhHHHHhhccCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhh
Q 008191 353 VMELYH----------------------PLALRLFLIGTHYRSPINYSVVQLESASER-IFYIYQTLHDCEKALSLLDAA 409 (574)
Q Consensus 353 ~l~~~~----------------------~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~-l~~l~~~l~~~~~~l~~~~~~ 409 (574)
+++..+ .+++||++++.+..+++.|+|+.+.+..++ .-+++++..|+.+++.+....
T Consensus 397 llde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~ 476 (577)
T COG0018 397 LLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGED 476 (577)
T ss_pred HHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcccc
Confidence 999888 999999999999999999999999998874 337888888888888765311
Q ss_pred h----------cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhc----c--hhhhhHHHH
Q 008191 410 A----------LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKG----K--KQAMRLESL 473 (574)
Q Consensus 410 ~----------~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~----~--~~~~~~~~l 473 (574)
. .....+.+|+..+.+++..+.+|. +++.++....+|++|+..+|+||+.++. . ....|+.++
T Consensus 477 ~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~ 555 (577)
T COG0018 477 ELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-EELEPHRLANYLYDLAGSFNSFYNACPVLGAENEELRAARLALV 555 (577)
T ss_pred ccccccccchhccChHHHHHHHHHHHhHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHhhCCcCCCCcHHHHHHHHHHH
Confidence 0 111224678889999999999999 9999999999999999999999999872 1 235789999
Q ss_pred HHHHHHHHHHHhhhcccc
Q 008191 474 AALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 474 ~~~~~~l~~~l~iLGi~p 491 (574)
.++..+|.+.|.+|||.+
T Consensus 556 ~a~~~vL~ngL~LLGI~~ 573 (577)
T COG0018 556 KATRQVLKNGLDLLGIEA 573 (577)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 999999999999999975
No 57
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=3.5e-33 Score=289.96 Aligned_cols=275 Identities=17% Similarity=0.212 Sum_probs=189.6
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc------------------HHHHHHHHHcCCC
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD------------------DKIIARANELGED 158 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g------------------~kI~~~A~~~g~~ 158 (574)
.-+..||++|||.+||||+|+++.+|+++|++|++|++|.|++++|||| .++...+...|..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 4577889999999999999999999999999999999999999999994 4555555666666
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCcccccccH--HHHHHHHHHHHHCCceeee--------cCceeecCC-CCCCccc
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHM--PHIIDMITQILDNGFAYRV--------DGDVYFSVD-KFPEYGQ 227 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~--~~i~~~i~~L~~kG~aY~~--------~~~v~f~~~-~~~~yg~ 227 (574)
+ +++++|.+.|.+.|+.|||. ++++.++..+. .....+...|.+++.|.+. ....|+... -|++||+
T Consensus 100 ~-~~~d~~~~~f~~~l~~lgi~-~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~ 177 (353)
T cd00674 100 E-SYAEHFERPFEESLEKLGIE-VEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGK 177 (353)
T ss_pred H-HHHHHHHHHHHHHHHHcCCe-eeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCc
Confidence 6 99999999999999999997 67554443332 3445666777777776431 235566554 3889997
Q ss_pred ccCccccccc-CCCccccCCCccCccchhhcccccCCCCccccCCcCcCCC-CccchhHHHHhhhCCCceeeeccccccC
Q 008191 228 LSGRKLEDNR-AGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPG-WHIECSAMSAAYLGHSFDIHGGGMDLVF 305 (574)
Q Consensus 228 Ls~~~~~~~~-~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~Pg-Whiecsam~~~~lG~~~dih~~G~Dl~f 305 (574)
+. ..+.+.. +...|.......+. -+-.-..|. .+.+|-+.+|. |.+ + .+|+.++|+||.-
T Consensus 178 ~~-~~v~~~d~~~~~v~y~c~cG~~----g~~~~~~g~--~KL~Wr~dW~~rW~~---------l--~Vd~E~~GkDh~~ 239 (353)
T cd00674 178 DT-TTVEAYDAKAGTVTYKCECGHE----ETVDIRTGR--GKLTWRVDWPMRWAI---------L--GVDFEPFGKDHAS 239 (353)
T ss_pred ce-eEEEEEeCCCCeEEEEcCCCCE----EEEeecCCC--cccCCCCCchhhhhh---------c--CCCEEeeCccccc
Confidence 75 2222111 11122221111110 000000111 14566666665 533 4 4789999999875
Q ss_pred ccchHHH--HHHh-hccCCCCceEEEEeeEEEeCCc-ccccccCceeehhhhhhccChhhHHHHhhccC-CCCCCCCCHH
Q 008191 306 PHHENEI--AQSC-AACNNSHISYWIHNGFVTIDSE-KMSKSLGNFFTIRQVMELYHPLALRLFLIGTH-YRSPINYSVV 380 (574)
Q Consensus 306 pH~~~~~--A~~~-a~~~~~~~~~~~h~g~v~~~G~-KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~-~~~~~~fs~~ 380 (574)
+...... +++. +++..+|.. +.+|||+++|. |||||+||+|+++|+++.+++|++|||+++.+ ..++++|+++
T Consensus 240 ~ggs~~~~~~i~~~ilg~~~P~~--~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd~~ 317 (353)
T cd00674 240 AGGSYDTGKEIAREIFGGEPPVP--VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFDLD 317 (353)
T ss_pred cccHHHHHHHHHHHHhCCCCCeE--EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcChh
Confidence 5222222 3343 566666644 45699999876 99999999999999999999999999999987 8899999985
Q ss_pred HHHHHHHHHHHHHH
Q 008191 381 QLESASERIFYIYQ 394 (574)
Q Consensus 381 ~l~~a~~~l~~l~~ 394 (574)
+......+.++.+
T Consensus 318 -~~~~~dey~r~~~ 330 (353)
T cd00674 318 -ILRLYDEYDRLER 330 (353)
T ss_pred -HHHHHHHHHHHHH
Confidence 4444444444433
No 58
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.8e-30 Score=282.99 Aligned_cols=407 Identities=20% Similarity=0.258 Sum_probs=286.1
Q ss_pred cCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHH----HHHHHcC-C--------
Q 008191 91 PKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKII----ARANELG-E-------- 157 (574)
Q Consensus 91 p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~----~~A~~~g-~-------- 157 (574)
|..++...|+.++|+|.|.+|||||-+..+-|+++||.||.||.|.++-|+|..|--+. +.-.+.| +
T Consensus 71 ~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe 150 (995)
T KOG0432|consen 71 PNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGRE 150 (995)
T ss_pred CCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHH
Confidence 33456778999999999999999999999999999999999999999999999984322 2222222 2
Q ss_pred ----ChHHHHHHHHHHHHHHHHhcCCCCCCCcccc--c---ccHHHHHHHHHHHHHCCceeeecCceeecCCCC------
Q 008191 158 ----DPISLSRRYCEEFHQDMVDLHCLPPSVEPRV--S---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF------ 222 (574)
Q Consensus 158 ----~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~--s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~------ 222 (574)
..+++-++|...+.+++++||.+ .|+ .|. | .--..+.+.|-+|.+.|+||...+-|.+|+.-.
T Consensus 151 ~F~~~vw~Wk~e~g~~I~~Qlk~lGas-~DW-~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdi 228 (995)
T KOG0432|consen 151 EFLKEVWEWKEEYGGRIYNQLKRLGAS-LDW-DREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDI 228 (995)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHhcCc-ccc-cHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhh
Confidence 24778889999999999999996 332 232 2 345688899999999999999999888885410
Q ss_pred ---------------CCc------cccc----------------Ccccc-------------------------------
Q 008191 223 ---------------PEY------GQLS----------------GRKLE------------------------------- 234 (574)
Q Consensus 223 ---------------~~y------g~Ls----------------~~~~~------------------------------- 234 (574)
+.| |.|- ...++
T Consensus 229 EVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~ 308 (995)
T KOG0432|consen 229 EVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTG 308 (995)
T ss_pred eecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCC
Confidence 111 1110 00000
Q ss_pred -----------cccCCCc-cccCCCccCccchhhccccc-----------------------------------------
Q 008191 235 -----------DNRAGER-VAVDSRKKNPADFALWKSAK----------------------------------------- 261 (574)
Q Consensus 235 -----------~~~~g~~-v~~~~~k~~~~Df~lwk~~~----------------------------------------- 261 (574)
++.-|+. |.+ ...++|.|+.++|+..
T Consensus 309 r~lPiI~D~~Vd~~fGTGaVKI-TPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL 387 (995)
T KOG0432|consen 309 RKLPIICDIAVDMEFGTGAVKI-TPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGL 387 (995)
T ss_pred CccceeecccccccccccceEe-cCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhh
Confidence 0001111 000 0123344554443210
Q ss_pred ----------------CCC-------Ccc-----------------------------------------c----cCCcC
Q 008191 262 ----------------EGE-------PFW-----------------------------------------E----SPWGP 273 (574)
Q Consensus 262 ----------------~g~-------~~w-----------------------------------------~----~~WG~ 273 (574)
.|+ |.| . .-||-
T Consensus 388 ~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGH 467 (995)
T KOG0432|consen 388 YVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGH 467 (995)
T ss_pred hhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhcc
Confidence 000 111 1 24787
Q ss_pred cCCCCccch-------h----------H---HHHh----------------------------hhCCC-----------c
Q 008191 274 GRPGWHIEC-------S----------A---MSAA----------------------------YLGHS-----------F 294 (574)
Q Consensus 274 g~PgWhiec-------s----------a---m~~~----------------------------~lG~~-----------~ 294 (574)
-.|-|++-. . | ...+ .+|+| .
T Consensus 468 rIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~ 547 (995)
T KOG0432|consen 468 RIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPL 547 (995)
T ss_pred ccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCc
Confidence 778766510 0 0 0000 13442 3
Q ss_pred eeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhh-----------------
Q 008191 295 DIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME----------------- 355 (574)
Q Consensus 295 dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~----------------- 355 (574)
.+-=.|.||+||+-...+.+..-++|+ ||.++++| ++|.. .|+|||||+||||+|.|+|+
T Consensus 548 sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH-~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLd 626 (995)
T KOG0432|consen 548 SLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLH-GLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLD 626 (995)
T ss_pred hhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeec-hhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCC
Confidence 355569999999776666666666776 78888775 99986 79999999999999999998
Q ss_pred -------------cc-------ChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhh----
Q 008191 356 -------------LY-------HPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLL-DAA---- 409 (574)
Q Consensus 356 -------------~~-------~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~-~~~---- 409 (574)
.| |.|+|||.|++- .-.+++++|...+...+...++|||+.+.+...+.+. ...
T Consensus 627 p~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~ 706 (995)
T KOG0432|consen 627 PREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTED 706 (995)
T ss_pred HHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Confidence 24 999999999885 8899999999999999999999999988876654432 110
Q ss_pred -hcCCC-CChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcc--h--hhhhHHHHHHHHHHHH
Q 008191 410 -ALKDS-IPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGK--K--QAMRLESLAALEKTIR 481 (574)
Q Consensus 410 -~~~~~-~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~--~--~~~~~~~l~~~~~~l~ 481 (574)
..... .+.|++..+....+++.+.| +.++++.|..++..|. ..+..|++..++. . ..........+..++.
T Consensus 707 ~~~~~~~~d~WIlsrL~~av~~~~~~~-~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld 785 (995)
T KOG0432|consen 707 LSGNESLVDEWILSRLAEAVEEVNESL-EARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLD 785 (995)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHHHH
Confidence 11111 67899999999999999999 9999999999999986 5678899887732 1 1223333455667778
Q ss_pred HHHhhh-ccccccHHHHHHHHH
Q 008191 482 NVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 482 ~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
..|++| +|||+.++++||.+.
T Consensus 786 ~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 786 NGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred HHHHHhcCcccccHHHHHHhcc
Confidence 888888 899999999999873
No 59
>PLN02286 arginine-tRNA ligase
Probab=99.98 E-value=1.1e-30 Score=289.71 Aligned_cols=353 Identities=14% Similarity=0.097 Sum_probs=261.4
Q ss_pred CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHH---H-cC-------C-----
Q 008191 94 EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARAN---E-LG-------E----- 157 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~---~-~g-------~----- 157 (574)
+++|.+..++|+|.|++||||+|+.+++|+|+|+|+..||+|....+++|+|.+|-.-+. + .+ .
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 368999999999999999999999999999999999999999999999999976532221 1 01 0
Q ss_pred -------------------------------------ChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHH
Q 008191 158 -------------------------------------DPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMIT 200 (574)
Q Consensus 158 -------------------------------------~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~ 200 (574)
-++.+++.....|.+.+++|||. .|. ...|.|.+.+.++++
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~-fd~-~ges~y~~~~~~vi~ 273 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVE-LEE-KGESFYNPYIPGVIE 273 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe-eee-cCchhhhhhHHHHHH
Confidence 01245556667889999999997 565 355677778899999
Q ss_pred HHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh--hcccccCCCCccccCCcCcCCCC
Q 008191 201 QILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA--LWKSAKEGEPFWESPWGPGRPGW 278 (574)
Q Consensus 201 ~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~--lwk~~~~g~~~w~~~WG~g~PgW 278 (574)
.|.++|++|+.+|..|++.+.. +. . .+-.-++|+..... .|.+ +||..
T Consensus 274 ~L~~~g~~~e~dGa~~v~l~~~---~~--~-~vl~ksDGt~tY~t------~DIA~~~~k~~------------------ 323 (576)
T PLN02286 274 ELESKGLVVESDGARVIFVEGF---DI--P-LIVVKSDGGFNYAS------TDLAALWYRLN------------------ 323 (576)
T ss_pred HHHHCCCEEeeCCceEeeccCC---CC--c-eEEEECCCchhhHH------HHHHHHHHHHh------------------
Confidence 9999999999999999865322 10 0 01111234332211 1433 23321
Q ss_pred ccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCC-C----CceEEEEeeEEE-eCCcccccccCceeehhh
Q 008191 279 HIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN-S----HISYWIHNGFVT-IDSEKMSKSLGNFFTIRQ 352 (574)
Q Consensus 279 hiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~----~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d 352 (574)
.+|....|.+.|.|+. .|.....+.+.+++.. . -..+ +..|+|+ .+|+||||+.||+|+++|
T Consensus 324 ----------~~~~d~~IyVvg~~q~-~hf~~v~~~l~~lG~~~~~~~~~l~h-~~~g~V~~~~g~kmStR~G~~v~L~d 391 (576)
T PLN02286 324 ----------EEKAEWIIYVTDVGQQ-QHFDMVFKAAKRAGWLPEDTYPRLEH-VGFGLVLGEDGKRFRTRSGEVVRLVD 391 (576)
T ss_pred ----------ccCCCEEEEEEeCcHH-HHHHHHHHHHHHcCCCccccCCceEE-EeeccEECCCCCcccCCCCCeeEHHH
Confidence 1344566888899854 1222233556666533 2 1222 4468886 578899999999999999
Q ss_pred hhhc-----------------------------cChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHH
Q 008191 353 VMEL-----------------------------YHPLALRLFLIGTHYRSPINYSVVQLESASERIF-YIYQTLHDCEKA 402 (574)
Q Consensus 353 ~l~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~-~l~~~l~~~~~~ 402 (574)
++++ .+.+++||++|+.+..++++|+++.+.+....-+ +++++..|+.++
T Consensus 392 lldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SI 471 (576)
T PLN02286 392 LLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSI 471 (576)
T ss_pred HHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHH
Confidence 9983 4689999999999999999999999887765433 778888888888
Q ss_pred Hhhhhhhh----------cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc---hhhhh
Q 008191 403 LSLLDAAA----------LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK---KQAMR 469 (574)
Q Consensus 403 l~~~~~~~----------~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~---~~~~~ 469 (574)
+.+..... ..++.+..|+..+..+++.+.++. +++.++..+.+|++|++.+|+||+.++.- ....|
T Consensus 472 lrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~~~aR 550 (576)
T PLN02286 472 IRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEAC-TDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSEEETSR 550 (576)
T ss_pred HHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHhcCccCCCCchhHH
Confidence 77653110 012234668889999999999998 99999999999999999999999877632 12578
Q ss_pred HHHHHHHHHHHHHHHhhhcccc
Q 008191 470 LESLAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 470 ~~~l~~~~~~l~~~l~iLGi~p 491 (574)
+.++.++..+|...|.+|||.+
T Consensus 551 L~L~~a~~~vL~~gL~LLGI~~ 572 (576)
T PLN02286 551 LLLCEATAIVMRKCFHLLGITP 572 (576)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999975
No 60
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=3.3e-31 Score=289.79 Aligned_cols=279 Identities=18% Similarity=0.173 Sum_probs=192.1
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccH--HH-------HHHHHHcCCC---------
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD--KI-------IARANELGED--------- 158 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~--kI-------~~~A~~~g~~--------- 158 (574)
.-++.||++|+|.+||||+|+++.+|+++|+||.+|++|.+++++||||. || ...++..|++
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 47889999999999999999999999999999999999999999999984 55 2345556665
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCCCCccccccc-H-HHHHHHHHHHHHCCceee--------ecCceeecCC-CCCCcc
Q 008191 159 -PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDH-M-PHIIDMITQILDNGFAYR--------VDGDVYFSVD-KFPEYG 226 (574)
Q Consensus 159 -~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~-~-~~i~~~i~~L~~kG~aY~--------~~~~v~f~~~-~~~~yg 226 (574)
+++|+++|.+.|.+.++.+||. ++++.++..| . .....+...|.+++.+.+ .....|+... -|++||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~-~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg 182 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIE-YEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKCG 182 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCc-eEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCC
Confidence 7999999999999999999996 6755443311 1 112222333333333321 1234566554 388999
Q ss_pred cccCccccccc-CCCccccCCCccCccchhhcccccCCCCccccCCcCcCCC-CccchhHHHHhhhCCCceeeecccccc
Q 008191 227 QLSGRKLEDNR-AGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPG-WHIECSAMSAAYLGHSFDIHGGGMDLV 304 (574)
Q Consensus 227 ~Ls~~~~~~~~-~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~Pg-Whiecsam~~~~lG~~~dih~~G~Dl~ 304 (574)
++......+.. ...+|.......+. . +-.-..|. ...+|-+.+|. |. ++ .+|+.++|+||.
T Consensus 183 ~~~~~~~~~~d~~~~~v~y~~~cG~~--~--~~~~~~g~--~KL~Wr~dW~~rW~---------~l--~Vd~e~~GkDh~ 245 (510)
T PRK00750 183 KVLTTPVISYDAEAGTVTYDCECGHE--G--EVPVTGGH--GKLQWKVDWPMRWA---------AL--GVDFEPFGKDHA 245 (510)
T ss_pred ccceEEEEEEeCCCCEEEEEcCCCCE--E--EEecCCCC--cccCCCCCcHHHHH---------Hc--CCCEEeeCcccC
Confidence 97654332211 11122221111110 0 00000111 14556555554 42 34 478999999998
Q ss_pred CccchHHHHHHh-hccCCCCceEEEEeeEEEeC-CcccccccCceeehhhhhhccChhhHHHHhhc-cCCCCCCCCCHHH
Q 008191 305 FPHHENEIAQSC-AACNNSHISYWIHNGFVTID-SEKMSKSLGNFFTIRQVMELYHPLALRLFLIG-THYRSPINYSVVQ 381 (574)
Q Consensus 305 fpH~~~~~A~~~-a~~~~~~~~~~~h~g~v~~~-G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~~~~~~~~fs~~~ 381 (574)
.+++.....++. +++.++|.. +|+||++++ |+|||||+||+|++.|+++.+++|++|||++. .++.++++|++
T Consensus 246 ~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~-- 321 (510)
T PRK00750 246 SASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV-- 321 (510)
T ss_pred cchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH--
Confidence 854444445555 666666643 678999997 99999999999999999999999999987775 59999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008191 382 LESASERIFYIYQTLH 397 (574)
Q Consensus 382 l~~a~~~l~~l~~~l~ 397 (574)
+..+.+.+.++.+.+.
T Consensus 322 l~~~~dey~rl~~~~~ 337 (510)
T PRK00750 322 IPKLVDEYDRFERKYF 337 (510)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888777766553
No 61
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.97 E-value=1.2e-29 Score=248.77 Aligned_cols=207 Identities=21% Similarity=0.175 Sum_probs=160.4
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
+|.+..++|||+|++||||+|++|++|+|+|+|++.||+|.+++++||+|+||+..|.+.+ .++++++.+.+.|.++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYG 79 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999997764 499999999999999999
Q ss_pred hcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh
Q 008191 176 DLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255 (574)
Q Consensus 176 ~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~ 255 (574)
+|||. +|.++++|++++.+++++++|.++|++|+.+|.+||+++++. .+ + |+.
T Consensus 80 ~L~i~-~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~---~~----------------------~-d~v 132 (212)
T cd00671 80 RLDVR-FDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFG---DD----------------------K-DRV 132 (212)
T ss_pred HhCCc-CceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhC---CC----------------------C-CeE
Confidence 99997 799999999999999999999999999999999999976541 11 1 343
Q ss_pred hcccccCCCCccccCCcCcCCCCccchhHHHH-hh-hCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEE--ee
Q 008191 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSA-AY-LGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIH--NG 331 (574)
Q Consensus 256 lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~-~~-lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h--~g 331 (574)
+.|+ .|.|.++..-.|++. +. .+.+..|.+.|.|+. .|.....+.+.+++..+..++ .| .|
T Consensus 133 l~rs-------------dG~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~-~~~~~~~~~~~~lg~~~~~~~-~h~~~~ 197 (212)
T cd00671 133 LVRS-------------DGTYTYFTRDIAYHLDKFERGADKIIYVVGADHH-GHFKRLFAALELLGYDEAKKL-EHLLYG 197 (212)
T ss_pred EEEC-------------CCCccchHHHHHHHHHHHhcCCCEEEEEECCCHH-HHHHHHHHHHHHcCCCCCCCe-EEEEEE
Confidence 3332 133333321112211 11 345566889999965 344444566666665422222 34 38
Q ss_pred EEEeC-CcccccccC
Q 008191 332 FVTID-SEKMSKSLG 345 (574)
Q Consensus 332 ~v~~~-G~KMSKS~G 345 (574)
+|+.. |+||||+.|
T Consensus 198 ~v~~~~~~kmS~R~G 212 (212)
T cd00671 198 MVNLPKEGKMSTRAG 212 (212)
T ss_pred eEEcCCCCCCCCCCC
Confidence 88876 999999987
No 62
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.97 E-value=6.5e-30 Score=286.47 Aligned_cols=126 Identities=18% Similarity=0.159 Sum_probs=101.5
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CC----------------C
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GE----------------D 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~----------------~ 158 (574)
+..+...+|+++|.+||||++++++.|+++||.||+|++|.++.|+|.+|.+|+.++++. |. .
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~ 103 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREE 103 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHH
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhh
Confidence 445566678888999999999999999999999999999999999999999999988764 33 2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCccccc---ccHHHHHHHHHHHHHCCceeeecCceeecCCC
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK 221 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s---~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~ 221 (574)
++++++++.+.+.+++++||+...-..+..| .+...++..|.+|.++|++|++...|+||+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~ 169 (601)
T PF00133_consen 104 CREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSC 169 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTT
T ss_pred hcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCccc
Confidence 5789999999999999999996321222233 68899999999999999999999999999986
No 63
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.96 E-value=1.5e-29 Score=274.80 Aligned_cols=272 Identities=18% Similarity=0.246 Sum_probs=188.8
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc------------------HHHHHHHHHcCCC
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD------------------DKIIARANELGED 158 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g------------------~kI~~~A~~~g~~ 158 (574)
.-++.||-+|+|.+||||+|.++.+|+++|++|.+|++|.++++.||+| .++...+...|..
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 5678889999999999999999999999999999999999999999994 4444444445654
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCccccc----------------ccHHHHHHHHHHHHHCCceeeecCceeecCC-C
Q 008191 159 PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS----------------DHMPHIIDMITQILDNGFAYRVDGDVYFSVD-K 221 (574)
Q Consensus 159 ~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s----------------~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~-~ 221 (574)
.+|+++|...|.+.|+.|||. ++ +.++| ++.+.|.+++...... .....||... -
T Consensus 99 -~s~~~h~~~~~~~~l~~~gi~-~e-~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~-----~~~~~~~P~~pi 170 (515)
T TIGR00467 99 -TSYAEHFLIPFLESLPVLGIN-PE-FIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTS-----KLEENWYPISVF 170 (515)
T ss_pred -HHHHHHHHHHHHHHHHHcCCe-EE-EEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCC-----ccCCCceeeeee
Confidence 999999999999999999996 33 33343 2333444444443321 1235566554 3
Q ss_pred CCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCC-CccchhHHHHhhhCCCceeeecc
Q 008191 222 FPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPG-WHIECSAMSAAYLGHSFDIHGGG 300 (574)
Q Consensus 222 ~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~Pg-Whiecsam~~~~lG~~~dih~~G 300 (574)
|+.||++..... +.....+|.......+. -+-.-..|. .+.+|-+.+|. |.+ + .+|+...|
T Consensus 171 c~~cGrv~~~~~-~~~~~~~v~Y~c~cG~~----g~~~~~~g~--~KL~WkvdW~~RW~~---------l--gV~~Ep~G 232 (515)
T TIGR00467 171 CENCGRDTTTVN-NYDNEYSIEYSCECGNQ----ESVDIYTGA--IKLPWRVDWPARWKI---------E--KVTFEPAG 232 (515)
T ss_pred cCCcCccCceEE-EecCCceEEEEcCCCCE----EEEeecCCC--cccCCCCCcHhhHhh---------h--CcccccCC
Confidence 899999754222 22111233222111110 000000111 14566666665 533 4 47899999
Q ss_pred ccccCccch----HHHHHHhhccCCCCceEEEEeeEEEe--CCcccccccCceeehhhhhhccChhhHHHHhhccCCCCC
Q 008191 301 MDLVFPHHE----NEIAQSCAACNNSHISYWIHNGFVTI--DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374 (574)
Q Consensus 301 ~Dl~fpH~~----~~~A~~~a~~~~~~~~~~~h~g~v~~--~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~ 374 (574)
+||.-+-.. ..+|+ +++++.+|..+ ..+|+.+ +|+|||||+||+|+++|+++.++++++||++++.+++++
T Consensus 233 kDH~~~ggsy~~~~~ia~-~~l~~~~P~~~--~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~~~~~ 309 (515)
T TIGR00467 233 KDHAAAGGSYDTGVNIAK-EIFQYSPPVTV--QYEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEFH 309 (515)
T ss_pred CCccCccCCchhHHHHHH-HHhCCCCCcCc--EEEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccCCCCC
Confidence 998765433 33444 56667666543 2477655 567999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 008191 375 INYSVVQLESASERIFYIYQTLHD 398 (574)
Q Consensus 375 ~~fs~~~l~~a~~~l~~l~~~l~~ 398 (574)
++|+++.+ ++...+.++...+..
T Consensus 310 ldFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 310 ISFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred CcCCHHHH-HHHHHHHHHHHHHHh
Confidence 99999988 888888877776654
No 64
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.2e-29 Score=263.96 Aligned_cols=391 Identities=20% Similarity=0.226 Sum_probs=264.3
Q ss_pred cCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 102 cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
--|-|.|.+||||.|.|++.|+++||.|++||+|.+.+|+|..|.+.+++|.+.|+.|.+++..+++.+++.|.+||+.
T Consensus 64 MFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~- 142 (876)
T KOG0435|consen 64 MFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSLGIS- 142 (876)
T ss_pred ecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHcCcc-
Confidence 3466779999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCcccc----cccHHHHHHHHHHHHHCCceeeecCceeecCCCCC--------Cccc--ccC-----------------
Q 008191 182 PSVEPRV----SDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP--------EYGQ--LSG----------------- 230 (574)
Q Consensus 182 ~d~~~r~----s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~--------~yg~--Ls~----------------- 230 (574)
+|+.-.- .+|....|.+|-+|.++|+||..+-.|.||+-++. .-|+ -||
T Consensus 143 FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfiktta 222 (876)
T KOG0435|consen 143 FDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTA 222 (876)
T ss_pred cccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhH
Confidence 5543222 27999999999999999999999988988875421 0000 000
Q ss_pred -----------------------------------------c-----------ccccc----------------------
Q 008191 231 -----------------------------------------R-----------KLEDN---------------------- 236 (574)
Q Consensus 231 -----------------------------------------~-----------~~~~~---------------------- 236 (574)
. .++.+
T Consensus 223 YAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lk 302 (876)
T KOG0435|consen 223 YAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLK 302 (876)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHH
Confidence 0 00000
Q ss_pred ---c-------------------CCCccc-------cCCC---------ccCccchhhcccc----------------cC
Q 008191 237 ---R-------------------AGERVA-------VDSR---------KKNPADFALWKSA----------------KE 262 (574)
Q Consensus 237 ---~-------------------~g~~v~-------~~~~---------k~~~~Df~lwk~~----------------~~ 262 (574)
+ .|..+. ++.+ ..+-+|+.+|..- |.
T Consensus 303 efl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~ 382 (876)
T KOG0435|consen 303 EFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKK 382 (876)
T ss_pred HhhhhhhccccCcccceeeccCCCCceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhh
Confidence 0 000000 0000 0112477776540 00
Q ss_pred -------C----------------------C------Ccc----ccCCcCcCCCCcc-chh-------------------
Q 008191 263 -------G----------------------E------PFW----ESPWGPGRPGWHI-ECS------------------- 283 (574)
Q Consensus 263 -------g----------------------~------~~w----~~~WG~g~PgWhi-ecs------------------- 283 (574)
+ . -.| -.-||.+.|-=|+ +|-
T Consensus 383 ~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~ 462 (876)
T KOG0435|consen 383 NEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDF 462 (876)
T ss_pred hccccccchhHHHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCccccccccc
Confidence 0 0 012 1248877774332 111
Q ss_pred ------------------------------HHHH---------hhhC----------------CCceeeeccccccCccc
Q 008191 284 ------------------------------AMSA---------AYLG----------------HSFDIHGGGMDLVFPHH 308 (574)
Q Consensus 284 ------------------------------am~~---------~~lG----------------~~~dih~~G~Dl~fpH~ 308 (574)
.|-. +|+. -|+||.+||+.|.--|.
T Consensus 463 ~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHL 542 (876)
T KOG0435|consen 463 TPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHL 542 (876)
T ss_pred CCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEeccHHHHHHHH
Confidence 1100 0111 17899999999987777
Q ss_pred hHHHHHHhhcc-------CCCCceEEEEee-----------------------------EEEe---------CCcccccc
Q 008191 309 ENEIAQSCAAC-------NNSHISYWIHNG-----------------------------FVTI---------DSEKMSKS 343 (574)
Q Consensus 309 ~~~~A~~~a~~-------~~~~~~~~~h~g-----------------------------~v~~---------~G~KMSKS 343 (574)
.|-.-.+.-+. .+||.+. +..| .+.+ -=+|||||
T Consensus 543 lYaRF~~kFl~di~~~~t~EPF~~L-i~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKS 621 (876)
T KOG0435|consen 543 LYARFIAKFLKDIGVVSTAEPFTKL-ITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKS 621 (876)
T ss_pred HHHHHHHHHHhhcCCCcCCCcHHHH-HhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhc
Confidence 76554333221 1122211 1111 1111 12599999
Q ss_pred cCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhcC----CCCC
Q 008191 344 LGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLL--DAAALK----DSIP 416 (574)
Q Consensus 344 ~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~--~~~~~~----~~~~ 416 (574)
++|.|+|.|++.+||+|++|+++|-. ++++++++++..+....+.+.|+|....++...-... .+.... ....
T Consensus 622 K~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~ 701 (876)
T KOG0435|consen 622 KHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAET 701 (876)
T ss_pred ccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhH
Confidence 99999999999999999999999986 9999999999999999999999998887765442111 111111 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHH
Q 008191 417 PDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYS 495 (574)
Q Consensus 417 ~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~ 495 (574)
..+.+..+.++..+.+.+..++..+.|++.++.|.+.+-+.+........ .....|..+..+| ++.|+.++
T Consensus 702 ~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~~h~~--------~~~~al~~lv~mlaP~aPh~as 773 (876)
T KOG0435|consen 702 RKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLVHSP--------EFERALEALVIMLAPFAPHVAS 773 (876)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCh--------HHHHHHHHHHHHHhccCchhHH
Confidence 46777888999999999999999999999999999877665543221111 1122233333334 78999999
Q ss_pred HHHHHHH
Q 008191 496 EVLLQLR 502 (574)
Q Consensus 496 ~i~~~l~ 502 (574)
|+|..|.
T Consensus 774 E~Ws~l~ 780 (876)
T KOG0435|consen 774 ELWSALA 780 (876)
T ss_pred HHHHHHh
Confidence 9998875
No 65
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.3e-26 Score=243.16 Aligned_cols=208 Identities=19% Similarity=0.209 Sum_probs=161.3
Q ss_pred CceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehhhhhhc------cChhhHHH
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMEL------YHPLALRL 364 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~------~~~d~lR~ 364 (574)
..|+..-|.|..+-+.---.-.+.|...+ |+..+++ |||... +|.|||||+||||+|+.++++ ||+|.|||
T Consensus 566 ~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~viv-HGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~ 644 (937)
T KOG0433|consen 566 VADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIV-HGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRF 644 (937)
T ss_pred ceeeEEecchhcchHHHHHHHHHHHHhccCCchheee-eeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceee
Confidence 35788889998777666666677777666 5556645 699775 799999999999999999998 99999999
Q ss_pred HhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccC
Q 008191 365 FLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDL 438 (574)
Q Consensus 365 ~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~ 438 (574)
|.+.+.+..++...+..|.++...+.++.++++.+...+.+.... ....-+++.++..+.++.+++.+.+ ++|
T Consensus 645 WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y-~~Y 723 (937)
T KOG0433|consen 645 WVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY-NDY 723 (937)
T ss_pred eeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHH-Hhc
Confidence 999889999999999999999999999999999888877665321 1112346778889999999999999 999
Q ss_pred CHHHHHHHHHHHHHH-H-HHHHHhhhc-----c-hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 439 HTTVVLAALSDPLKT-I-NDLLHTRKG-----K-KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 439 n~~~al~~l~~l~~~-~-N~~~~~~~~-----~-~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
++.+++..|..|... + |-|++-.+. + ...+|...-..+...+..+..++ +|.|+-.+|+|+.+.
T Consensus 724 ~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP 796 (937)
T KOG0433|consen 724 KFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLP 796 (937)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCC
Confidence 999999999988653 3 556665541 1 22334433333444555566665 899999999999875
No 66
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.93 E-value=6.1e-26 Score=208.96 Aligned_cols=142 Identities=32% Similarity=0.368 Sum_probs=131.6
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
+++|||+|+|++||||+|+++.+|+++|+||++|++|.+++++||+|++|...|.+.+.+++++++++.+.|.++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--- 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE--- 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcc
Q 008191 179 CLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWK 258 (574)
Q Consensus 179 I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk 258 (574)
T Consensus 78 -------------------------------------------------------------------------------- 77 (143)
T cd00802 78 -------------------------------------------------------------------------------- 77 (143)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe-CC
Q 008191 259 SAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DS 337 (574)
Q Consensus 259 ~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G 337 (574)
|+++|+++...+.+...+++++|+|+.+ |+.+..+++++++... ...|+|.|+|+. +|
T Consensus 78 -------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~-~p~~~~~~~l~~~~g 136 (143)
T cd00802 78 -------------------YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPA-RPFGLTFGRVMGADG 136 (143)
T ss_pred -------------------HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCC-CceEEEeCCeECCCC
Confidence 8899999988877777899999999998 9999999999987543 346789999998 55
Q ss_pred ccccccc
Q 008191 338 EKMSKSL 344 (574)
Q Consensus 338 ~KMSKS~ 344 (574)
+|||||+
T Consensus 137 ~KmSks~ 143 (143)
T cd00802 137 TKMSKSK 143 (143)
T ss_pred CcCCCCC
Confidence 9999995
No 67
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.2e-23 Score=223.56 Aligned_cols=247 Identities=17% Similarity=0.191 Sum_probs=182.2
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCC-CceEEEEeeEEEe-CCcccccccCceeehhhhhhccChhhHHHHhhccC
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNS-HISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTH 370 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~-~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~ 370 (574)
|.|.-.-|.|+.+-+.---...+.+++++| +.|+ +.||.|+. +|+|||||+.|+.+|..++++||+|+||+||+.+|
T Consensus 554 PadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSP 632 (1070)
T KOG0434|consen 554 PADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSP 632 (1070)
T ss_pred chHhhhhccccccchhhHHHHHHHHHcCCCcchhe-eEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCc
Confidence 445666688888776655566777888875 4565 77999997 89999999999999999999999999999999985
Q ss_pred C--CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhh-----------hcCCCCChhHHHHHHHHHHHHHHHHHc
Q 008191 371 Y--RSPINYSVVQLESASERI-FYIYQTLHDCEKALSLLDAA-----------ALKDSIPPDTVTSINKFHNDFLASMSD 436 (574)
Q Consensus 371 ~--~~~~~fs~~~l~~a~~~l-~~l~~~l~~~~~~l~~~~~~-----------~~~~~~~~~l~~~l~~~~~~~~~am~d 436 (574)
. ...+.|.++++.+..+.+ --+||.++.+......+... ...+..++|+....+.+..-+++.| +
T Consensus 633 VvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM-~ 711 (1070)
T KOG0434|consen 633 VVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM-D 711 (1070)
T ss_pred cccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-H
Confidence 4 589999999999988764 36777777665544332110 1223467999999999999999999 9
Q ss_pred cCCHHHHHHHHHHHHHHH-HHHHHhhhc--c---hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHHHHH-hh
Q 008191 437 DLHTTVVLAALSDPLKTI-NDLLHTRKG--K---KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLREKAL-KR 508 (574)
Q Consensus 437 d~n~~~al~~l~~l~~~~-N~~~~~~~~--~---~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~~~~-~~ 508 (574)
.+....++..|..|+..+ |.|+.-++. + ...+....|..+..+|..+.+++ ++.|+.+|-++|.|+.... +.
T Consensus 712 ~YrLytVvp~llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~ 791 (1070)
T KOG0434|consen 712 QYRLYTVVPRLLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDK 791 (1070)
T ss_pred heehhhhHHHHHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccc
Confidence 999999999999999876 888765541 1 22345566777777888888887 6999999999999875432 00
Q ss_pred -----ccc----cHHHHHHHHH---HHHHHhhhhcHHHHHHHHHH
Q 008191 509 -----ADL----TEDQVLQRIE---DRTVARKNKEYEKSDAIRKD 541 (574)
Q Consensus 509 -----~~~----~~~~i~~Li~---~R~~AR~~Kdf~~AD~IRd~ 541 (574)
.++ .|..-+.++. +|...|.++-.+++..||++
T Consensus 792 ~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~R~iRer 836 (1070)
T KOG0434|consen 792 NEKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLARNIRER 836 (1070)
T ss_pred cCCccceeEEeecCCchhhhccchHHHHHHHHHHHHHHHHHHhhc
Confidence 000 1211122332 25567777778888888873
No 68
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.3e-24 Score=228.60 Aligned_cols=273 Identities=18% Similarity=0.236 Sum_probs=194.9
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc--HHH----H--HHHHH-cCCC--------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD--DKI----I--ARANE-LGED-------- 158 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g--~kI----~--~~A~~-~g~~-------- 158 (574)
.--++-+|.||+|.+||||+|..+.+|+++|.|+.+|++|.+++-+||+| .|+ . +..++ .|++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 34567889999999999999999999999999999999999999999998 333 2 22222 3443
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCCCCccccc----------------ccHHHHHHHHHHHHHCCceeeecCceeecCC
Q 008191 159 --PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS----------------DHMPHIIDMITQILDNGFAYRVDGDVYFSVD 220 (574)
Q Consensus 159 --~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s----------------~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~ 220 (574)
...|++++...|.+.|+.+||. +.+ .++| ++.++|.+++.+...+ .-...|+...
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~-~E~-~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~-----~~~e~~~P~~ 171 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIE-VEF-VSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR-----ELEEDWSPFM 171 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCc-eEE-EEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC-----cccCCceecc
Confidence 4789999999999999999996 332 2222 4555666666665544 1223454443
Q ss_pred -CCCCcccccCcccccccCCCccccCCCccCc--cchhhcccccCCCCccccCCcCcCCC-CccchhHHHHhhhCCCcee
Q 008191 221 -KFPEYGQLSGRKLEDNRAGERVAVDSRKKNP--ADFALWKSAKEGEPFWESPWGPGRPG-WHIECSAMSAAYLGHSFDI 296 (574)
Q Consensus 221 -~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~--~Df~lwk~~~~g~~~w~~~WG~g~Pg-Whiecsam~~~~lG~~~di 296 (574)
-|+.||++....+.+...+.+|.......+. .|.. .|. -..+|-+.+|. |. +| .+|+
T Consensus 172 piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir------~g~--~KL~WRvdWp~RW~---------~l--gVd~ 232 (521)
T COG1384 172 PICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIR------GGE--GKLPWRVDWPMRWA---------AL--GVDF 232 (521)
T ss_pred ccccccCCcceeEEEEecCCceEEEEecCCccceeecc------ccC--cccccCcCccchhh---------cc--Cccc
Confidence 3889999654444433222244332211111 1111 010 13566666665 52 24 4789
Q ss_pred eeccccccCccchHHHHHHhhc---cCCCCceEEEEeeEEEeCC-cccccccCceeehhhhhhccChhhHHHHhhccCCC
Q 008191 297 HGGGMDLVFPHHENEIAQSCAA---CNNSHISYWIHNGFVTIDS-EKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYR 372 (574)
Q Consensus 297 h~~G~Dl~fpH~~~~~A~~~a~---~~~~~~~~~~h~g~v~~~G-~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~ 372 (574)
...||||.-+...+..+...+- +.+||..++ ++|++++| +|||||+||+|+++|+++.+.|+.|||+++++.+.
T Consensus 233 EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~--YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~ 310 (521)
T COG1384 233 EPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFV--YEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPN 310 (521)
T ss_pred ccCCcccccccCchHHHHHHHHHhcCCCCCCCCc--eEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCC
Confidence 9999999999888888766554 457887774 49999987 89999999999999999999999999999999898
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHHHH
Q 008191 373 SPINYSVVQ-LESASERIFYIYQTL 396 (574)
Q Consensus 373 ~~~~fs~~~-l~~a~~~l~~l~~~l 396 (574)
+.++|+.+. +.+....+.++.+..
T Consensus 311 r~~~~d~~~~il~lvDEydr~e~~Y 335 (521)
T COG1384 311 RHIDFDFDLGILKLVDEYDRLERIY 335 (521)
T ss_pred cceecCCCCChhHHHHHHHHHHHHH
Confidence 888888887 777777666544443
No 69
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.92 E-value=8.6e-26 Score=232.15 Aligned_cols=275 Identities=17% Similarity=0.206 Sum_probs=151.6
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc--HHHHHHHHHc------CCC--------
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD--DKIIARANEL------GED-------- 158 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g--~kI~~~A~~~------g~~-------- 158 (574)
+..-++-+|-+|+|.+||||+|..+.+|+++|.|+.+|++|.++..+||.| .||....-+. |++
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 456778889999999999999999999999999999999999999999999 5655432221 222
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCCCCccccc----------------ccHHHHHHHHHHHHHCCceeeecCceeecCC
Q 008191 159 --PISLSRRYCEEFHQDMVDLHCLPPSVEPRVS----------------DHMPHIIDMITQILDNGFAYRVDGDVYFSVD 220 (574)
Q Consensus 159 --~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s----------------~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~ 220 (574)
...|+++|...|.+.|+.|||. +++. ++| ++.+.|.+++.+..... ....||...
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie-~e~~-s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~-----~~~~y~Pf~ 174 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIE-YEFI-SQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE-----RPETYSPFL 174 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT----EEE-ECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT-------TT--SEE
T ss_pred CCCccHHHHHHHHHHHHHHHcCCc-eEEE-eHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC-----CCCCeeeee
Confidence 3789999999999999999996 3221 222 34555666666654432 233455543
Q ss_pred -CCCCcccccCccccccc-CCCccccCC-CccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceee
Q 008191 221 -KFPEYGQLSGRKLEDNR-AGERVAVDS-RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIH 297 (574)
Q Consensus 221 -~~~~yg~Ls~~~~~~~~-~g~~v~~~~-~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih 297 (574)
-|+.||++....+.+.. .+.+|.... ...+. -+-.-..|. -..+|-+.+|. --.++ .+|+.
T Consensus 175 piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~----g~~~i~~g~--gKL~WkvDW~m--------RW~~l--gVdfE 238 (360)
T PF01921_consen 175 PICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHE----GEVDITGGN--GKLQWKVDWPM--------RWAAL--GVDFE 238 (360)
T ss_dssp EEETTTEE--EEEEEEE--SSSEEEEE--TTS-------EEETTTT---EEE-HHHHHHH--------HHHHT--T-SEE
T ss_pred eeccccCCcccceeeEeecCCCEEEEEecCCCCE----EEEecCCCc--ccccCCCcChh--------hhhhc--Cceec
Confidence 27899996443333221 222332211 11110 000000110 12333333332 12234 47899
Q ss_pred eccccccCccchHHHHHHhh---ccCCCCceEEEEeeEEEeCCc-ccccccCceeehhhhhhccChhhHHHHhhccCCCC
Q 008191 298 GGGMDLVFPHHENEIAQSCA---ACNNSHISYWIHNGFVTIDSE-KMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRS 373 (574)
Q Consensus 298 ~~G~Dl~fpH~~~~~A~~~a---~~~~~~~~~~~h~g~v~~~G~-KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~ 373 (574)
..||||.-+...+..+.-.| ++.+||..+ .++|++++|. |||||+||+++++|+|+-+.|++|||+++++.+.+
T Consensus 239 p~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~--~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P~~ 316 (360)
T PF01921_consen 239 PFGKDHASPGGSYDTSKRIAREILGYEPPVPF--PYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKPNK 316 (360)
T ss_dssp EEEHHHHCTTSHHHHHHHHHHHCC-----EEE--EE--EEES--------------HHHHHTTS-HHHHHHHHHCS-TTS
T ss_pred cCCCccCCCCCChhhHHHHHHHHhCCCCCCCC--CeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcccCCCc
Confidence 99999999888888876666 445666544 4699999876 99999999999999999999999999999999999
Q ss_pred CCCCCHH-HHHHHHHHHHHHHH
Q 008191 374 PINYSVV-QLESASERIFYIYQ 394 (574)
Q Consensus 374 ~~~fs~~-~l~~a~~~l~~l~~ 394 (574)
..+|+.+ .+......+.++.+
T Consensus 317 ~~~~~~~~~i~~~~Deyd~~~~ 338 (360)
T PF01921_consen 317 AKDFSFDLVIPRLYDEYDRLER 338 (360)
T ss_dssp -EEE--STTHHHHHHHHHHHHH
T ss_pred ceEeccCcchHHHHHHHHHHHH
Confidence 9999988 77777776654443
No 70
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.91 E-value=4.2e-24 Score=232.75 Aligned_cols=264 Identities=23% Similarity=0.240 Sum_probs=197.2
Q ss_pred CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 94 EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
+++|.+. |+|+|+|++||||+|++++.+.++| +|+..++..+||.|.+|.+ ....|.+.|.++
T Consensus 99 ~g~V~tR-FaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~R-----------~~~e~~~~I~ed 161 (567)
T PRK04156 99 KGKVVMR-FAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTKR-----------PDPEAYDMILED 161 (567)
T ss_pred CCeEEEE-eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCccc-----------chHHHHHHHHHH
Confidence 5678888 9999999999999999999999999 5888999999999987732 123455899999
Q ss_pred HHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee--cCceeecCCC---CC-CcccccCc-cc---ccccCCC---
Q 008191 174 MVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV--DGDVYFSVDK---FP-EYGQLSGR-KL---EDNRAGE--- 240 (574)
Q Consensus 174 l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~--~~~v~f~~~~---~~-~yg~Ls~~-~~---~~~~~g~--- 240 (574)
|+.||+. +|..++.|+|.+...+++++|+++|+||.- ....+ .-.. .+ .|-.++.. ++ +.|..|+
T Consensus 162 L~wLGl~-wD~~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~-~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~ 239 (567)
T PRK04156 162 LKWLGVK-WDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEF-KELRDAGKPCPHRDKSPEENLELWEKMLDGEYKE 239 (567)
T ss_pred HHHcCCC-CCCccCcccCHHHHHHHHHHHHHcCCCccCCCCHHHH-HHHHhcCCCCCCcCCCHHHHHHHHHHhhcCcccc
Confidence 9999995 688889999999999999999999999963 11111 0000 00 11112211 11 2233333
Q ss_pred -----ccccCCCccCc--cchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccC---ccchH
Q 008191 241 -----RVAVDSRKKNP--ADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF---PHHEN 310 (574)
Q Consensus 241 -----~v~~~~~k~~~--~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~f---pH~~~ 310 (574)
++..+....|| .||++|+......+ .||.++++|+.. .|...+|-|..|++|++ .|+.+
T Consensus 240 g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~----~~Gd~~~i~PtY-------~fA~~VDD~l~GITHViRg~d~~~~ 308 (567)
T PRK04156 240 GEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHP----RVGDKYRVWPTY-------NFAVAVDDHLLGVTHVLRGKDHIDN 308 (567)
T ss_pred CCeEEEEECcccCCCCCccccEEEEEcCCCcc----ccCCCeEEEEEe-------ccCceeeecCCCCCeEEcccccccC
Confidence 23333334455 79999987543333 388888888652 46678999999999999 99999
Q ss_pred HHHHHhhcc--CCCCceEEEEeeEEEeCCccccccc-------C--------ceeehhhhhh-ccChhhHHHHhhccCCC
Q 008191 311 EIAQSCAAC--NNSHISYWIHNGFVTIDSEKMSKSL-------G--------NFFTIRQVME-LYHPLALRLFLIGTHYR 372 (574)
Q Consensus 311 ~~A~~~a~~--~~~~~~~~~h~g~v~~~G~KMSKS~-------G--------n~i~~~d~l~-~~~~d~lR~~ll~~~~~ 372 (574)
.+.|...+. +.+++ +|+|.+.|+++|.|||||. | +..|+..+.+ .|.|+++|.|++...++
T Consensus 309 t~~Q~~l~~~Lg~~~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s 387 (567)
T PRK04156 309 TEKQRYIYDYFGWEYP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVK 387 (567)
T ss_pred hHHHHHHHHHcCCCCc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 998876653 33333 5689999999999999998 5 3467777776 49999999999988776
Q ss_pred -CCCCCCHHHHHHHHHH
Q 008191 373 -SPINYSVVQLESASER 388 (574)
Q Consensus 373 -~~~~fs~~~l~~a~~~ 388 (574)
++..|+++.|....+.
T Consensus 388 ~~~~~~~~~~L~~~nr~ 404 (567)
T PRK04156 388 ETDATISWENLYAINRK 404 (567)
T ss_pred CCCcccCHHHHHHHHHH
Confidence 9999999999877654
No 71
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.88 E-value=1e-22 Score=214.44 Aligned_cols=250 Identities=22% Similarity=0.219 Sum_probs=162.6
Q ss_pred CCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH-------c---------
Q 008191 92 KVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE-------L--------- 155 (574)
Q Consensus 92 ~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~-------~--------- 155 (574)
..+.+|.+..++|+|.||+||||+|+.+++|+|+|+|+..||+|....+++|+|.+|-.-+.. .
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 355689999999999999999999999999999999999999999999999999765321110 0
Q ss_pred ---------------C------------------------CChHHHHHH-HHHHHHHHHHhcCCCCCCCcccccc--cHH
Q 008191 156 ---------------G------------------------EDPISLSRR-YCEEFHQDMVDLHCLPPSVEPRVSD--HMP 193 (574)
Q Consensus 156 ---------------g------------------------~~~~e~a~~-~~~~f~~~l~~L~I~~~d~~~r~s~--~~~ 193 (574)
. ....++..+ ..+..++++++|+|. .|.+...++ +.+
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~-fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIR-FDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT----SEEEEHCHHHHTT
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHH-hCcCcccchhhhhh
Confidence 0 012334444 677888899999996 677664443 556
Q ss_pred HHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcC
Q 008191 194 HIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGP 273 (574)
Q Consensus 194 ~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~ 273 (574)
.+.+++++|.++|++|+.+|.+|++++.+ |...+..+. -.+|+...+. +|.+..+..
T Consensus 176 ~v~~vl~~L~e~g~~~~~dGa~~i~~~~~---g~~k~~Vl~-ksDGt~~Y~t------rDiA~~~~r------------- 232 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESDGALWIDLTKF---GDDKDRVLR-KSDGTSTYLT------RDIAYHLYR------------- 232 (354)
T ss_dssp HHHHHHHHHHCTTTEEEETTEEEEEGCCT---STSS-EEEE-ETTSEB-HHH------HHHHHHHHH-------------
T ss_pred HHHHHHHHHHhCCcEEecCCcEEEechhc---CCCCcceEE-cCCCceEEEc------chHHHHHHH-------------
Confidence 78999999999999999999999998754 432222111 1233332211 143321110
Q ss_pred cCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCC-ceEE-EEeeEEEe-CCc-ccccccCceee
Q 008191 274 GRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSH-ISYW-IHNGFVTI-DSE-KMSKSLGNFFT 349 (574)
Q Consensus 274 g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~-~~~~-~h~g~v~~-~G~-KMSKS~Gn~i~ 349 (574)
....+....|.+.|.|+. .|...-.+.+.+++..+. .++. +..|+++. +|+ ||||++||+|+
T Consensus 233 -------------~~~~~~d~~iyV~~~~q~-~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~ 298 (354)
T PF00750_consen 233 -------------FEEYGFDKIIYVVGADQK-GHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKGNVIT 298 (354)
T ss_dssp -------------HCCSS-SEEEEEEEGGGH-HHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-TTTTSSTB
T ss_pred -------------HhhhccccEEEEecCchh-hHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCccccCCCCCceE
Confidence 011445566888999865 233334455566654221 2221 33455655 676 89999999999
Q ss_pred hhhhhh--------------------------ccChhhHHHHhhccCCCCCCCCCH
Q 008191 350 IRQVME--------------------------LYHPLALRLFLIGTHYRSPINYSV 379 (574)
Q Consensus 350 ~~d~l~--------------------------~~~~d~lR~~ll~~~~~~~~~fs~ 379 (574)
++|+|+ ..+..++||++|+....+++.|+|
T Consensus 299 l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 299 LDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred HHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 999999 577888999999988888888875
No 72
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.85 E-value=2.4e-20 Score=174.20 Aligned_cols=155 Identities=32% Similarity=0.441 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Q 008191 380 VQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLH 459 (574)
Q Consensus 380 ~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~ 459 (574)
+.|.++.+.+.+|++++.++. .+. .. ...+..+.+.|.+||+||||||.|+++|+++++.+|.++.
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~-~~~--------~~-----~~~~~~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~ 67 (156)
T cd07963 2 DNLEDARAALERLYTALRGVP-PTT--------VD-----IDWGEPFAERFIAAMDDDFNTPEALAVLFELAREINRLKK 67 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-hcc--------cc-----hhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 578899999999999887653 110 00 1123456789999999999999999999999999999885
Q ss_pred hhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHH
Q 008191 460 TRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIR 539 (574)
Q Consensus 460 ~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IR 539 (574)
... . .+..+...+..++.+|||......+.... .....+..+++|+.|+++|++||++|||++||+||
T Consensus 68 ~~~-----~---~~~~~~~~l~~~~~vLGl~~~~~~~~~~~----~~~~~~~~~~~v~~Ll~~R~~aR~~Kdf~~AD~IR 135 (156)
T cd07963 68 EDI-----E---KAAALAALLKALGGVLGLLQQDPEAFLQG----GTGEGGLSVAEIEALIAQRNQARKAKDWAEADRIR 135 (156)
T ss_pred cch-----H---HHHHHHHHHHHHHhccCCCCCCHHHHHhc----cccccccCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 321 1 13445566777888999853221111100 00011223456999999999999999999999999
Q ss_pred HHhHhCCcEEEeCCCCeEEEE
Q 008191 540 KDLAAVGIALMDSPVGTTWRP 560 (574)
Q Consensus 540 d~L~~~GI~leDt~~Gt~W~~ 560 (574)
++|.++||.|+|+|+||+|++
T Consensus 136 d~L~~~Gi~i~Dt~~Gt~w~~ 156 (156)
T cd07963 136 DELAAQGIILEDSPEGTTWRR 156 (156)
T ss_pred HHHHHCCcEEEECCCCceeeC
Confidence 999999999999999999974
No 73
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.78 E-value=2.5e-18 Score=169.26 Aligned_cols=211 Identities=19% Similarity=0.188 Sum_probs=152.3
Q ss_pred EEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 008191 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC 179 (574)
Q Consensus 100 y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I 179 (574)
.=|+|||||++||||+|++++.|+++| ++++.++..+||.|++.+ + ....+.+.|.++|+.||+
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~wLGl 67 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEWLGV 67 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHHcCC
Confidence 358999999999999999999999999 789999999999998765 1 233445569999999999
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhccc
Q 008191 180 LPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKS 259 (574)
Q Consensus 180 ~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~ 259 (574)
. +|..++.|+|++.+++++++|+++|++|.. +. .| .||.+
T Consensus 68 ~-~d~~~~qS~r~~~y~~~~~~Li~~G~aY~~-----------~~-------------~~------------~~~~i--- 107 (240)
T cd09287 68 K-WDEVVIASDRIELYYEYARKLIEMGGAYVH-----------PR-------------TG------------SKYRV--- 107 (240)
T ss_pred C-CCCccchhccHHHHHHHHHHHHHcCCcccC-----------cc-------------cC------------CcEEE---
Confidence 5 788889999999999999999999999970 00 00 13332
Q ss_pred ccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcc
Q 008191 260 AKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEK 339 (574)
Q Consensus 260 ~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~K 339 (574)
+|.+|+.|+.- ....| +..-+=|.|+. +.....+.+..+++.++| .| .|...++.+|+|
T Consensus 108 ---------------~ptY~la~vVD-D~~~g--IThViRg~d~~-~~t~~q~~l~~~Lg~~~P-~~-~H~pll~~~~~k 166 (240)
T cd09287 108 ---------------WPTLNFAVAVD-DHLLG--VTHVLRGKDHI-DNTEKQRYIYEYFGWEYP-ET-IHWGRLKIEGGK 166 (240)
T ss_pred ---------------EEccccceeee-ccccC--CCeEEechhhh-hCCHHHHHHHHHcCCCCC-cE-EeeeeecCCCCe
Confidence 25555543211 00112 23334466654 444556667777766554 34 588999889999
Q ss_pred cccccCc---------------eeehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHH
Q 008191 340 MSKSLGN---------------FFTIRQVME-LYHPLALRLFLIGT-HYRSPINYSVVQLESASE 387 (574)
Q Consensus 340 MSKS~Gn---------------~i~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~ 387 (574)
|||+.+. ..++..+.+ .|.|++++-|++.. --.++..++++.|....+
T Consensus 167 LSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 167 LSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred eccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 9999842 134555543 68999999888875 345788899888876654
No 74
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.5e-14 Score=147.98 Aligned_cols=356 Identities=16% Similarity=0.149 Sum_probs=238.6
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHH---HH-------------------
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKI---IA------------------- 150 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI---~~------------------- 150 (574)
..++|-+-..+|+.-..+|+||+|+.|++|.++|.+++.|++|..+..+.|+|.+. |.
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDL 265 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDL 265 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhH
Confidence 34678888999999999999999999999999999999999999999999998542 11
Q ss_pred -------------------HHHH-----cCCC------hHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHH
Q 008191 151 -------------------RANE-----LGED------PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMIT 200 (574)
Q Consensus 151 -------------------~A~~-----~g~~------~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~ 200 (574)
+|.+ +|.+ |..+|+-..++|...+++|.|+- ..-..|.|.+.|.++++
T Consensus 266 QvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l--~e~GESFYq~~m~~vve 343 (656)
T KOG4426|consen 266 QVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISL--KERGESFYQDRMAEVVE 343 (656)
T ss_pred HHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchH--hhcchhhhhhHHHHHHH
Confidence 1111 1222 46788999999999999999963 23345679999999999
Q ss_pred HHHHCCceeeecCc-eeecCCCCCCcccccCcccccccCCCccccCCCccCccchh-hcccccCCCCccccCCcCcCCCC
Q 008191 201 QILDNGFAYRVDGD-VYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA-LWKSAKEGEPFWESPWGPGRPGW 278 (574)
Q Consensus 201 ~L~~kG~aY~~~~~-v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~-lwk~~~~g~~~w~~~WG~g~PgW 278 (574)
.|..||+..+.+|. +.|... |+- +..+.. .+|.. .-+..|.+ +|-+-.+.. . .|
T Consensus 344 el~~kglvee~~Gr~i~f~~g----~~I--PLtvVK-SDGGf------tYdtsDlaAl~yRl~EEk----a-------dw 399 (656)
T KOG4426|consen 344 ELKSKGLVEEDDGRRIMFPEG----CDI--PLTVVK-SDGGF------TYDTSDLAALKYRLNEEK----A-------DW 399 (656)
T ss_pred HHhcCCceeecCCceEeccCC----CCc--ceEEEe-cCCCc------ccccchHHHHHHHHHHhh----c-------Ce
Confidence 99999999998764 555543 210 000000 11211 11123543 343221110 1 12
Q ss_pred ccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe---CCcccccccCceeehhhhhh
Q 008191 279 HIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI---DSEKMSKSLGNFFTIRQVME 355 (574)
Q Consensus 279 hiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~---~G~KMSKS~Gn~i~~~d~l~ 355 (574)
-|. +.-.|.-. .|..++-.|+-.+...+...++ -|.||-.+ +|+|+-++.|.+|-+.|+|+
T Consensus 400 iIY--------------VvD~GQs~-Hf~t~fkAar~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsgetVrL~DLLd 463 (656)
T KOG4426|consen 400 IIY--------------VVDSGQSQ-HFNTIFKAARKAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGETVRLLDLLD 463 (656)
T ss_pred EEE--------------EeeCchhH-HHHHHHHHHHHcCccCCCccce-eeeeeeeEEccCcccccccccceeeHHHHHH
Confidence 221 00012110 0111222233333334444555 67788554 67899999999999999987
Q ss_pred c-----------------------------cChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 008191 356 L-----------------------------YHPLALRLFLIGTHYRSPINYSVVQLESASERIF-YIYQTLHDCEKALSL 405 (574)
Q Consensus 356 ~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~-~l~~~l~~~~~~l~~ 405 (574)
+ ++-..+.|.-|+..--++.-||.+.|.+-+.+.. ++.++..++.++..+
T Consensus 464 Eg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rk 543 (656)
T KOG4426|consen 464 EGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARK 543 (656)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHHHHHHH
Confidence 2 2223578888887778999999999877665433 555666666665543
Q ss_pred hhh-----------hh---cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc---h---
Q 008191 406 LDA-----------AA---LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK---K--- 465 (574)
Q Consensus 406 ~~~-----------~~---~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~---~--- 465 (574)
... .+ ...+.+..+...+-++.+.+.+++ +++-++..+.++++++..+..||+++... +
T Consensus 544 sg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~-~~L~lh~lC~y~y~l~t~Ft~FY~~Cyv~e~~~eg~ 622 (656)
T KOG4426|consen 544 SGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKAL-DSLFLHVLCDYLYELATLFTEFYDSCYVIEKNKEGE 622 (656)
T ss_pred cCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccEEeccccccc
Confidence 210 00 111223456667778888888888 99999999999999999999999887621 1
Q ss_pred ----hhhhHHHHHHHHHHHHHHHhhhcccc
Q 008191 466 ----QAMRLESLAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 466 ----~~~~~~~l~~~~~~l~~~l~iLGi~p 491 (574)
...|+.++.++..+++..+.+|||-|
T Consensus 623 i~~vn~sRllLCeata~VmrkcF~iLGi~p 652 (656)
T KOG4426|consen 623 IPFVNMSRLLLCEATAAVMRKCFHILGIKP 652 (656)
T ss_pred cccchhHHHHHHHHHHHHHHHhhHhhCCcc
Confidence 14678888889999999999999987
No 75
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.2e-14 Score=151.90 Aligned_cols=356 Identities=15% Similarity=0.106 Sum_probs=235.4
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHH----------------------
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIA---------------------- 150 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~---------------------- 150 (574)
.++++-+...+|+...+.|+||.|+.+++-.++...+..|++|..+.+.-|+|.++--
T Consensus 108 ~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL 187 (567)
T KOG1195|consen 108 SGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHL 187 (567)
T ss_pred cCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHH
Confidence 3578999999999999999999999999999999999999999999999999744210
Q ss_pred --------H-HHH---------------cC------CChHHHHHHHHHHHHHHHHhcCCCCCCCccccc-ccHHHHHHHH
Q 008191 151 --------R-ANE---------------LG------EDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVS-DHMPHIIDMI 199 (574)
Q Consensus 151 --------~-A~~---------------~g------~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s-~~~~~i~~~i 199 (574)
+ |++ ++ +-|+.+-+--++.+.+.+++|||. +|.++..| -..+.++...
T Consensus 188 ~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~-FD~y~gESqv~~e~~~~~~ 266 (567)
T KOG1195|consen 188 FDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVK-FDEYSGESQVSNEKMQEAL 266 (567)
T ss_pred HHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhcee-eeeccchHHHHHHHHHHHH
Confidence 1 111 00 012335555667778889999996 88898888 5667888999
Q ss_pred HHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCc
Q 008191 200 TQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWH 279 (574)
Q Consensus 200 ~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWh 279 (574)
+.+..+|+.-+-+|...++.++.. +-.+..+....+|.+..+. +|.+
T Consensus 267 d~~rs~~l~~e~dG~~vidL~~~~---~~~~~~~V~ksdgttLYlt------Rdia------------------------ 313 (567)
T KOG1195|consen 267 DLLRSANLTEEIDGTIVIDLSKID---KKAGKAVVQKSDGTTLYLT------RDIA------------------------ 313 (567)
T ss_pred HHHHhcCCcccCCCcEEEEecccC---cccceEEEEcCCCceehHH------HHHH------------------------
Confidence 999999977788999999887532 1111112222234443221 1221
Q ss_pred cchhHHHHhhhCCCce--eeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhh--
Q 008191 280 IECSAMSAAYLGHSFD--IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME-- 355 (574)
Q Consensus 280 iecsam~~~~lG~~~d--ih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~-- 355 (574)
+.+.++-.+.+| |.+..... --|.....-++++.+++ |+.-.-|..|-. +.=||+++|+++.+.|+++
T Consensus 314 ----aal~Rl~~y~fdr~iYVvd~~Q-~~hf~~lf~ilk~mg~~-~a~~~qHV~~G~--v~GmsTRkG~~~fl~dil~e~ 385 (567)
T KOG1195|consen 314 ----AALDRLEKYSFDRLIYVVDSQQ-KDHFCQLFEILKKMGFD-WAKKLQHVNFGR--VQGMSTRKGKVVFLDDILEEA 385 (567)
T ss_pred ----HHHHHHHhcCcceEEEEechHH-HHHHHHHHHHHHHhCch-hhhhcceecccc--cccccccCCceeeHHHHHHHH
Confidence 111111111111 22221100 01222222334444433 222212222222 2459999999999999887
Q ss_pred --------------------------ccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhh
Q 008191 356 --------------------------LYHPLALRLFLIGTHYRSPINYSVVQLESASERIF-YIYQTLHDCEKALSLLDA 408 (574)
Q Consensus 356 --------------------------~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~-~l~~~l~~~~~~l~~~~~ 408 (574)
..|..++..-.+...-.++..|+|+.+-......+ +|..+..++.+...++..
T Consensus 386 re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~ 465 (567)
T KOG1195|consen 386 REQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSD 465 (567)
T ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccc
Confidence 25677777777777777888999998877776544 555666665555444321
Q ss_pred --h--------h-cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch-----hhhhHHH
Q 008191 409 --A--------A-LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK-----QAMRLES 472 (574)
Q Consensus 409 --~--------~-~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~-----~~~~~~~ 472 (574)
. . ..++.-..++..+..+.+.+..+| +++++...+.+|+.++.++++++..-+... .-.|+.+
T Consensus 466 ~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~-e~lE~~~lV~YL~~La~a~s~~yk~l~V~d~~~eia~aRL~L 544 (567)
T KOG1195|consen 466 VTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM-EQLEPCTLVTYLFKLAHAVSSAYKILWVKDSPMEIALARLLL 544 (567)
T ss_pred cCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH-HhhcchhHHHHHHHHHHHHHhHHhheeecCCcHHHHHHHHHH
Confidence 0 0 011112456778889999999999 999999999999999999999987765332 2357888
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 008191 473 LAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 473 l~~~~~~l~~~l~iLGi~p 491 (574)
..++..+|.+.+++|||.|
T Consensus 545 f~AvRqVL~ngm~lLGitP 563 (567)
T KOG1195|consen 545 FSAVRQVLNNGMRLLGITP 563 (567)
T ss_pred HHHHHHHHHhHHHHhCCCc
Confidence 8899999999999999988
No 76
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.49 E-value=1.4e-11 Score=134.26 Aligned_cols=241 Identities=19% Similarity=0.207 Sum_probs=150.1
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|+++....++|- .. =.++.=++|.|. ......+.+.+.++|+.||+. +
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar~--~~---G~~iLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~-~ 67 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAKH--TG---GEFILRIEDTDL-------------ERNIEEAEEAILEGLKWLGIS-W 67 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cC---CEEEEEeCcCCC-------------ccCChHHHHHHHHHHHHCCCC-C
Confidence 5899999999999999999999884 23 367777888774 123346788999999999997 4
Q ss_pred C-CcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCCc----ccccCcccc-cccCCCc-
Q 008191 183 S-VEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPEY----GQLSGRKLE-DNRAGER- 241 (574)
Q Consensus 183 d-~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~y----g~Ls~~~~~-~~~~g~~- 241 (574)
| --.+.|++.+...+++++|+++|.||.- ||... .+.| -.++..... ....|..
T Consensus 68 de~~~~QS~r~~~y~~~~~~L~~~g~aY~C-----~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~ 142 (470)
T TIGR00464 68 DEGPYYQSQRLDIYKKYAKELLEEGLAYRC-----YCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPP 142 (470)
T ss_pred CCCeeehhCCHHHHHHHHHHHHHcCCEEec-----CCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCc
Confidence 5 4456789999999999999999999942 22211 1111 112110000 0011111
Q ss_pred -cccCCCc------------------cCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeecccc
Q 008191 242 -VAVDSRK------------------KNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMD 302 (574)
Q Consensus 242 -v~~~~~k------------------~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~D 302 (574)
+.+.... ....|+++.| ..|.|.+|++|... ....| ++.-+-|.|
T Consensus 143 ~iR~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R-------------sdG~ptY~~A~~vd-D~~~~--ithvIrG~d 206 (470)
T TIGR00464 143 VVRFKIPQEAVVSFNDQVRGEITFQNSELDDFVILR-------------SDGSPTYNFAVVVD-DYLMK--ITHVIRGED 206 (470)
T ss_pred eEEEEcCCCCceeEEecccceEEecCccCCCeEEEe-------------cCCCcccccHHHHH-HHhCC--CCEEEECch
Confidence 0000000 0011222222 24778888766432 12234 343447888
Q ss_pred ccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhc-cCh---------------------
Q 008191 303 LVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMEL-YHP--------------------- 359 (574)
Q Consensus 303 l~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~-~~~--------------------- 359 (574)
+.- |.....+...+++..+ +++ .|..++ ..+|.||||+.| .++++++++. |-|
T Consensus 207 ~~~-~t~~~~~l~~aLg~~~-p~~-~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~ 282 (470)
T TIGR00464 207 HIS-NTPKQILIYQALGWKI-PVF-AHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFF 282 (470)
T ss_pred hhc-CHHHHHHHHHHcCCCC-CeE-EEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccC
Confidence 763 4555566677776543 334 666663 458999999999 7899998875 233
Q ss_pred ---hhHHHHhhccCCCCCCCCCHHHHHHHHH
Q 008191 360 ---LALRLFLIGTHYRSPINYSVVQLESASE 387 (574)
Q Consensus 360 ---d~lR~~ll~~~~~~~~~fs~~~l~~a~~ 387 (574)
+++|+|.++....+++.|+++.+.-..+
T Consensus 283 ~~~~~i~~f~l~~~~~~~~~fd~~kL~~~N~ 313 (470)
T TIGR00464 283 SLEELIEIFSLNRVSKSPAKFDWKKLQWLNA 313 (470)
T ss_pred CHHHHHHhcCcccCCCCCCeecHHHHHHHHH
Confidence 5567776666666788888888555444
No 77
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.46 E-value=9.8e-13 Score=143.99 Aligned_cols=255 Identities=21% Similarity=0.235 Sum_probs=159.0
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||||++++.+.++| .|+..++.-+||.|.+ + -...|.+.|.++|+.||+. +
T Consensus 99 aPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp~---R----------~~~e~~~~I~edL~wLGi~-~ 159 (560)
T TIGR00463 99 APNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDPR---R----------VKPEAYDMILEDLDWLGVK-G 159 (560)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCcc---c----------ccHHHHHHHHHHHHHcCCC-C
Confidence 799999999999999999999997 4677899999999863 1 1224889999999999997 7
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeec----------CceeecCCCCCCcccccCc-cc---ccccCCCc-------
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVD----------GDVYFSVDKFPEYGQLSGR-KL---EDNRAGER------- 241 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~----------~~v~f~~~~~~~yg~Ls~~-~~---~~~~~g~~------- 241 (574)
|..+++|+|++.+.+++++|+++|+||.-. +..|-| .|-.++.. .+ ++|..|+.
T Consensus 160 d~~~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~-----~cR~~s~eenl~~fe~m~~g~~~~~~~~l 234 (560)
T TIGR00463 160 DEVVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVAC-----ACRDRSVEENLEIWEEMLNGTEEGGKVVV 234 (560)
T ss_pred CccccccccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCC-----CccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 889999999999999999999999999631 111111 12222211 11 12222221
Q ss_pred -cccCCCccC--ccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhc
Q 008191 242 -VAVDSRKKN--PADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA 318 (574)
Q Consensus 242 -v~~~~~k~~--~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~ 318 (574)
+..+..-.| -.|+++++......+.--..| .+.|.++++|..- ....| +..-+=|.|+.- ..........++
T Consensus 235 R~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~-~~~PtYdfA~~VD-D~l~g--ITHviRg~E~~~-nT~rq~yl~~~l 309 (560)
T TIGR00463 235 RAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKY-KVYPTMDFSVPID-DHLLG--VTHVLRGKDHID-NERKQQYIYMYF 309 (560)
T ss_pred EEECCCcCCCccccCcEEEEecCCCccccCCEE-EEEeccccceEee-cccCC--CCeEEechhhhc-CCHHHHHHHHHc
Confidence 111111112 257777765321111101122 2567777665321 11122 222233666543 111223334444
Q ss_pred cCCCCceEEEEeeEEEeCC-cccccccC-------ce--------eehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHH
Q 008191 319 CNNSHISYWIHNGFVTIDS-EKMSKSLG-------NF--------FTIRQVME-LYHPLALRLFLIGT-HYRSPINYSVV 380 (574)
Q Consensus 319 ~~~~~~~~~~h~g~v~~~G-~KMSKS~G-------n~--------i~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~ 380 (574)
+..+ ..| .|.+++.+++ .|+||+.. .+ .|+..+.. .+.|++||-|++.. .-..+..++++
T Consensus 310 g~~~-P~~-~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~ 387 (560)
T TIGR00463 310 GWEL-PEF-IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWK 387 (560)
T ss_pred CCCC-CeE-EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHH
Confidence 4443 334 7889999864 59998763 11 24444443 69999999999996 45688899999
Q ss_pred HHHHHHHH
Q 008191 381 QLESASER 388 (574)
Q Consensus 381 ~l~~a~~~ 388 (574)
.|....+.
T Consensus 388 ~l~~~nr~ 395 (560)
T TIGR00463 388 NIYAFNKK 395 (560)
T ss_pred HHHHHHHH
Confidence 98877654
No 78
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.38 E-value=7.5e-12 Score=135.71 Aligned_cols=255 Identities=15% Similarity=0.156 Sum_probs=162.0
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||||++++...++|. +.=.++.=+||.|. ..-...|.+.+.++|+.||+. +
T Consensus 17 APsPtG~LHiGharaAlln~l~Ar~-----~gG~~iLRiEDTDp-------------~R~~~e~~~~I~~dL~WLGl~-w 77 (523)
T PLN03233 17 PPEPSGYLHIGHAKAALLNDYYARR-----YKGRLILRFDDTNP-------------SKEKAEFEESIIEDLGKIEIK-P 77 (523)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCC-------------CccchHHHHHHHHHHHHhCCC-C
Confidence 5999999999999999999999985 23356677788774 223347889999999999997 6
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCC----------CCcccccCc----ccccccCCC-----c--
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF----------PEYGQLSGR----KLEDNRAGE-----R-- 241 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~----------~~yg~Ls~~----~~~~~~~g~-----~-- 241 (574)
|...+.|++.+...++.++|+++|.||.- ||.... ..|-.++.. ..+.|..|. .
T Consensus 78 D~~~~qSdr~~~y~~~a~~Li~~G~AY~C-----~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~l 152 (523)
T PLN03233 78 DSVSFTSDYFEPIRCYAIILIEEGLAYMD-----DTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCL 152 (523)
T ss_pred CCCccccccHHHHHHHHHHHHHcCCeEec-----CCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEE
Confidence 77778899999999999999999999963 221110 012122110 011121121 1
Q ss_pred ---cccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhc
Q 008191 242 ---VAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA 318 (574)
Q Consensus 242 ---v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~ 318 (574)
+++...-.+..||++.+......+.....| .+.|.++++|..- ....| +..-+=|.|++ .+......+..++
T Consensus 153 R~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~-~~~PtY~fA~~VD-D~l~g--ITHviRg~E~~-~~t~~q~~l~~aL 227 (523)
T PLN03233 153 RAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAY-KAYPTYDLACPIV-DSIEG--VTHALRTTEYD-DRDAQFFWIQKAL 227 (523)
T ss_pred EEeCcccCCCCCCcCCEEEEEcCCcccccCCcc-cceeccCCceeee-ccccC--CCeEEechhhh-cCCHHHHHHHHHh
Confidence 111111112357777765322122222334 5667776665211 11122 22223366654 4444555666677
Q ss_pred cCCCCceEEEEeeEEEeCCccccccc------Ccee---------ehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHHH
Q 008191 319 CNNSHISYWIHNGFVTIDSEKMSKSL------GNFF---------TIRQVME-LYHPLALRLFLIGT-HYRSPINYSVVQ 381 (574)
Q Consensus 319 ~~~~~~~~~~h~g~v~~~G~KMSKS~------Gn~i---------~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~~ 381 (574)
+...|. + .|.+.+.+.|.||||+. .+.| |+..+-+ .|.|++||=|++.. .-..+..++++.
T Consensus 228 g~~~P~-~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~ 305 (523)
T PLN03233 228 GLRRPR-I-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAK 305 (523)
T ss_pred CCCCCe-e-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHH
Confidence 665443 4 45677788999999997 3344 5677664 69999999999996 557888999999
Q ss_pred HHHHHHH
Q 008191 382 LESASER 388 (574)
Q Consensus 382 l~~a~~~ 388 (574)
|....+.
T Consensus 306 l~~~nR~ 312 (523)
T PLN03233 306 FWAENKK 312 (523)
T ss_pred HHHHHHH
Confidence 9887664
No 79
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.37 E-value=3.2e-10 Score=123.72 Aligned_cols=241 Identities=20% Similarity=0.242 Sum_probs=147.2
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|+++....++|- +.=.|+.=|+|.|. .-....+.+.+.++|+.||+. .
T Consensus 10 APSPtG~lHiG~~rtal~n~l~Ar~-----~~G~fiLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~-~ 70 (476)
T PRK01406 10 APSPTGYLHIGGARTALFNWLFARH-----HGGKFILRIEDTDQ-------------ERSTEEAEEAILEGLKWLGLD-W 70 (476)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHCCCC-C
Confidence 4899999999999999999999886 34467778888774 224457789999999999996 4
Q ss_pred CCc--------ccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CC----CcccccCccc-cc
Q 008191 183 SVE--------PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FP----EYGQLSGRKL-ED 235 (574)
Q Consensus 183 d~~--------~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~----~yg~Ls~~~~-~~ 235 (574)
|-- .+.|++.+...+++++|+++|.||.- ||... .+ .|-.++.... ..
T Consensus 71 De~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY~C-----~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~ 145 (476)
T PRK01406 71 DEGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAYYC-----YCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAAR 145 (476)
T ss_pred CCCCccCCCCceehhcCHHHHHHHHHHHHHcCCeeec-----CCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHH
Confidence 543 46689999999999999999999952 22110 01 1111211000 00
Q ss_pred ccCCCcc--cc--CC---------Cc-------cCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCce
Q 008191 236 NRAGERV--AV--DS---------RK-------KNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFD 295 (574)
Q Consensus 236 ~~~g~~v--~~--~~---------~k-------~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~d 295 (574)
+..|... .+ .. .+ ....|+++.| ..|.|.+|..+. ......|.+
T Consensus 146 ~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R-------------sDG~ptY~~a~v-VdD~~~~it-- 209 (476)
T PRK01406 146 LAAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILR-------------SDGTPTYNFAVV-VDDHLMGIT-- 209 (476)
T ss_pred HhCCCCeeEEEEcCCCCceEEEEeccceEEeccccCCCcEEEe-------------cCCCccccchHH-HHHHHcCCC--
Confidence 1112210 00 00 00 0012333333 246788877654 122334443
Q ss_pred eeeccccccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhc-cChhh------------
Q 008191 296 IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMEL-YHPLA------------ 361 (574)
Q Consensus 296 ih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~------------ 361 (574)
.-+-|.|++ .|.-...+...+++..+ ++ +.|..++ ..+|.||||+.| .++++++.+. |-|.+
T Consensus 210 hvIrG~d~~-~~t~~q~~l~~alG~~~-p~-~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG~s~ 285 (476)
T PRK01406 210 HVIRGEDHL-SNTPKQILLYEALGWEV-PV-FAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLGWSH 285 (476)
T ss_pred EEEECchhh-cCHHHHHHHHHHhCCCC-Ce-EEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhCCCC
Confidence 333788855 34445556667777554 33 4676774 468999999999 7899998874 45544
Q ss_pred -----------HHHHhhccCCCCCCCCCHHHHHHHHH
Q 008191 362 -----------LRLFLIGTHYRSPINYSVVQLESASE 387 (574)
Q Consensus 362 -----------lR~~ll~~~~~~~~~fs~~~l~~a~~ 387 (574)
+|+|.++.-..++..|+++.|.-..+
T Consensus 286 ~~~e~~~~~~~i~~f~l~~~~~s~~~fd~~kL~~~N~ 322 (476)
T PRK01406 286 GDQEIFSLEELIELFDLERVSKSPARFDIKKLDWLNG 322 (476)
T ss_pred CccccCCHHHHHHhcChhhCCCCCccccHHHHHHHHH
Confidence 44554444445666666666554444
No 80
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.6e-12 Score=139.04 Aligned_cols=202 Identities=19% Similarity=0.143 Sum_probs=138.1
Q ss_pred CCceeeeccccccCccchHHHHHHhhccC-CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACN-NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT- 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~- 369 (574)
+|+|+.+.|+|++--|..+.+--+.|+.. +.|++-.-.|||+++|++|||||.|||.|+++.+++||+|+.|+.|+..
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAG 741 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeeccc
Confidence 48999999999999898877766666653 4677666889999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhh-cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHH
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLD--AAA-LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAA 446 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~--~~~-~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~ 446 (574)
.--.|-||.+.....+ +-||++.+..+.+.+..-. ..+ ...-.|+-+.+.++..+..-.+++ ++.++..|+..
T Consensus 742 D~veDANF~ea~AnAa---ILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~ 817 (1080)
T KOG0437|consen 742 DGVEDANFVEANANAA---ILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAY-EDTLFKDALKY 817 (1080)
T ss_pred CCcccchhHHhcccHH---HHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh
Confidence 6678999986654433 4455665555555443211 011 111234556677788888888888 88899999887
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 447 LSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 447 l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
-+==..++..+|+...+.. -..+++. ..+.....+| +|.|+.++-+|..+.
T Consensus 818 Gfyd~qaArD~Yrel~g~~--mh~dLv~---r~ietqtlLLaPi~Ph~aeyiw~~~~ 869 (1080)
T KOG0437|consen 818 GFYDLQAARDMYRELCGEG--MHRDLVF---RFIETQTLLLAPICPHLAEYIWRTVL 869 (1080)
T ss_pred hhHHHHHHHHHHHHHhccc--ccHHHHH---HHHHHHHHHHhccchHHHHHHHHHhc
Confidence 5433333444444332211 1122222 2333333333 899998888887754
No 81
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.36 E-value=1.2e-11 Score=134.58 Aligned_cols=252 Identities=19% Similarity=0.117 Sum_probs=157.3
Q ss_pred cCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 102 cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
..|.|+|++||||||++++...++|. +.=.++.=+||.|.. .-...|.+.+.++|+.||+..
T Consensus 34 FaPsPtG~LHiG~ar~al~n~~~Ar~-----~~G~~iLRieDTd~~-------------r~~~e~~~~I~~dL~wLGi~~ 95 (554)
T PRK05347 34 FPPEPNGYLHIGHAKSICLNFGLAQD-----YGGKCNLRFDDTNPE-------------KEDQEYVDSIKEDVRWLGFDW 95 (554)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCCC-------------cCChHHHHHHHHHHHHcCCCC
Confidence 46999999999999999999999985 334566677777732 233478899999999999974
Q ss_pred CCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCCcccccCc-cc---ccccCCCc--
Q 008191 182 PSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPEYGQLSGR-KL---EDNRAGER-- 241 (574)
Q Consensus 182 ~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~yg~Ls~~-~~---~~~~~g~~-- 241 (574)
.+...+.|++.+...+..++|+++|.||.- ||... ...|-.++.. .+ +.|..|..
T Consensus 96 d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c-----~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~ 170 (554)
T PRK05347 96 SGELRYASDYFDQLYEYAVELIKKGKAYVD-----DLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPE 170 (554)
T ss_pred CCCceeeecCHHHHHHHHHHHHHcCCEeeC-----CCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCC
Confidence 355667889999999999999999999963 22210 0112122111 01 12333321
Q ss_pred ---c---ccCCCccCc--cchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccC------cc
Q 008191 242 ---V---AVDSRKKNP--ADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF------PH 307 (574)
Q Consensus 242 ---v---~~~~~k~~~--~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~f------pH 307 (574)
+ ..+-...|+ .|+++.+......+.=-..| ...|.++++|. +|=|..|+.|+. .|
T Consensus 171 g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~-~iyPtYdfA~~----------vdD~l~gITHvlRg~E~~~~ 239 (554)
T PRK05347 171 GSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKW-CIYPMYDFAHC----------ISDAIEGITHSLCTLEFEDH 239 (554)
T ss_pred CcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCce-eeecCcCccce----------eeccccCCceEEeccccccC
Confidence 1 111112233 47766664321111000122 23677776652 232333333332 23
Q ss_pred chHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCc-------e--------eehhhhhh-ccChhhHHHHhhcc-C
Q 008191 308 HENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGN-------F--------FTIRQVME-LYHPLALRLFLIGT-H 370 (574)
Q Consensus 308 ~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn-------~--------i~~~d~l~-~~~~d~lR~~ll~~-~ 370 (574)
......+..+++....+.+ ++.+++.++|.|||||.+. + .|+..+.+ .|.|+|||=|++.. -
T Consensus 240 t~~~~~i~~alg~~~~P~~-~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~ 318 (554)
T PRK05347 240 RPLYDWVLDNLPIPPHPRQ-YEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGV 318 (554)
T ss_pred hHHHHHHHHHcCCCCCCce-EEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCC
Confidence 3334455667764422333 3568899999999999964 2 26777764 69999999999986 4
Q ss_pred CCCCCCCCHHHHHHHHHH
Q 008191 371 YRSPINYSVVQLESASER 388 (574)
Q Consensus 371 ~~~~~~fs~~~l~~a~~~ 388 (574)
-..+..++++.|....+.
T Consensus 319 s~~~~~i~~~~L~~~nRk 336 (554)
T PRK05347 319 TKQDSVIDMSMLESCIRE 336 (554)
T ss_pred CCCCCeecHHHHHHHHHH
Confidence 467788999998877654
No 82
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.36 E-value=1.6e-11 Score=120.77 Aligned_cols=175 Identities=22% Similarity=0.182 Sum_probs=120.2
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|++++...++|- ++=.++.=++|.|.+ .-...+.+.+.++|+.||+. .
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~-w 67 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFARK-----YGGKFILRIEDTDPE-------------RSRPEYVESILEDLKWLGLD-W 67 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCeEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCC-C
Confidence 5999999999999999999999887 455677788888841 12336778999999999996 5
Q ss_pred CC-cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhccccc
Q 008191 183 SV-EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAK 261 (574)
Q Consensus 183 d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~ 261 (574)
|- ..+.|++.+...+.+++|+++| +
T Consensus 68 d~~~~~QS~r~~~y~~~~~~L~~~g--------g---------------------------------------------- 93 (230)
T cd00418 68 DEGPYRQSDRFDLYRAYAEELIKKG--------G---------------------------------------------- 93 (230)
T ss_pred CCCeeehhcCHHHHHHHHHHHHHcC--------C----------------------------------------------
Confidence 54 4567899999999999999999 1
Q ss_pred CCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe-CCccc
Q 008191 262 EGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKM 340 (574)
Q Consensus 262 ~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KM 340 (574)
.|.+++.|+.- ....| ++.-+=|.|++ ........+..+++.++ +.| .|...+.. +|+||
T Consensus 94 -------------~p~Y~la~vvD-D~~~g--IThViRG~D~l-~st~~q~~l~~~Lg~~~-P~~-~H~pll~~~~g~KL 154 (230)
T cd00418 94 -------------YPLYNFVHPVD-DALMG--ITHVLRGEDHL-DNTPIQDWLYEALGWEP-PRF-YHFPRLLLEDGTKL 154 (230)
T ss_pred -------------Ccccccccccc-ccccC--CCEEEECHhhh-hchHHHHHHHHHcCCCC-CeE-EEeeeeeCCCCCCc
Confidence 11111111000 00011 22223355544 23333444555665544 345 77788875 67999
Q ss_pred ccccCceeehhhhhh-ccChhhHHHHhhccC
Q 008191 341 SKSLGNFFTIRQVME-LYHPLALRLFLIGTH 370 (574)
Q Consensus 341 SKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~ 370 (574)
|||.|+ ++++++.+ .+.|++++-|++...
T Consensus 155 SKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 155 SKRKLN-TTLRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred cCcCCC-cCHHHHHHCCCcHHHHHHHHHHcC
Confidence 999998 67888765 599999999988643
No 83
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.35 E-value=1e-11 Score=133.16 Aligned_cols=239 Identities=18% Similarity=0.165 Sum_probs=148.7
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|+++....++|- +.-.|+.-|+|.|. ..-.+.+.+.|.++|+.|||. +
T Consensus 8 APSPTG~lHiG~artAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~Rs~~~~~~~I~e~L~wLGI~-~ 68 (445)
T PRK12558 8 APSPTGYLHVGNARTALLNWLYARK-----HGGKFILRIDDTDL-------------ERSKQEYADAIAEDLKWLGIN-W 68 (445)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeccCCc-------------ccchHHHHHHHHHHHHHcCCC-C
Confidence 5899999999999999877777665 67789999999983 123367889999999999997 7
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CC----CcccccCcccc-cccCCCcc-
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FP----EYGQLSGRKLE-DNRAGERV- 242 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~----~yg~Ls~~~~~-~~~~g~~v- 242 (574)
|.+.+.|+..+.+.+++++|+++|++|.- ||... .+ .|-.|+..... ....|...
T Consensus 69 De~y~QSer~~~y~~~~e~L~e~G~AY~C-----~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~ 143 (445)
T PRK12558 69 DRTFRQSDRFDRYDEAAEKLKAAGRLYPC-----YETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPH 143 (445)
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCEEEe-----cCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCce
Confidence 77788888889999999999999999952 22211 00 11112211000 00011110
Q ss_pred -ccCC-----------------CccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeecccccc
Q 008191 243 -AVDS-----------------RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 304 (574)
Q Consensus 243 -~~~~-----------------~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~ 304 (574)
.+.. .-....||++.| ..|.|.+|++|+.- ....| +...+=|.|++
T Consensus 144 iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R-------------~dg~PtY~fA~vVD-D~~m~--ITHViRG~d~l 207 (445)
T PRK12558 144 WRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIR-------------ADGSYLYTLPSVVD-DIDMG--ITHIIRGEDHV 207 (445)
T ss_pred EEEecCCCceEEEEEeeeEeecccccCCCeEEEe-------------cCCCccccccceec-cccCC--CCEEEechhhh
Confidence 0000 000012333333 24668888765321 01112 22223366644
Q ss_pred CccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhh-ccChhhHHHHhhcc--CCCCCCCCCHH
Q 008191 305 FPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT--HYRSPINYSVV 380 (574)
Q Consensus 305 fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~--~~~~~~~fs~~ 380 (574)
+..-..+.+..|++.++| .|.|...++. +|+|+||+.|. +++.++.+ .|-|++++=|++.- ++..+--|+.+
T Consensus 208 -~~t~~q~~l~~alg~~~P--~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~ 283 (445)
T PRK12558 208 -TNTAVQIQIFEALGAKPP--VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSME 283 (445)
T ss_pred -hCCHHHHHHHHHhCCCCC--eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHH
Confidence 233344455667765544 3478888875 78999999886 67877775 69999999988774 33333346877
Q ss_pred HHHHH
Q 008191 381 QLESA 385 (574)
Q Consensus 381 ~l~~a 385 (574)
.+.+.
T Consensus 284 eli~~ 288 (445)
T PRK12558 284 ELAES 288 (445)
T ss_pred HHHHh
Confidence 76554
No 84
>PLN02907 glutamate-tRNA ligase
Probab=99.32 E-value=3.2e-11 Score=136.79 Aligned_cols=255 Identities=16% Similarity=0.163 Sum_probs=159.6
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||||++++...++|. +.| .++.=+||-|. ..-...|.+.+.++|+.||+. +
T Consensus 219 aPsPtG~LHiG~ar~al~n~~~Ar~--~~G---~~iLR~eDTdp-------------~r~~~e~~~~I~~dl~wLG~~-~ 279 (722)
T PLN02907 219 PPEPSGYLHIGHAKAALLNQYFARR--YKG---KLIVRFDDTNP-------------SKESDEFVENILKDIETLGIK-Y 279 (722)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--hCC---EEEEEecCCCC-------------CcCChHHHHHHHHHHHHcCCC-C
Confidence 6999999999999999999999984 344 56667777773 122337889999999999997 6
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC---------C-CCcccccCcc----cccccCCCc-------
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK---------F-PEYGQLSGRK----LEDNRAGER------- 241 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~---------~-~~yg~Ls~~~----~~~~~~g~~------- 241 (574)
|...+.|++.+...++.++|+++|.||... |... + ..|-.++... .++|..|..
T Consensus 280 d~~~~qS~r~~~y~~~a~~Li~~G~aY~~~-----~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~l 354 (722)
T PLN02907 280 DAVTYTSDYFPQLMEMAEKLIKEGKAYVDD-----TPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCV 354 (722)
T ss_pred CCcccccccHHHHHHHHHHHHHcCCeeecC-----CCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 777889999999999999999999999631 1110 0 0121222110 112322321
Q ss_pred -cccCCCccC--ccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhc
Q 008191 242 -VAVDSRKKN--PADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA 318 (574)
Q Consensus 242 -v~~~~~k~~--~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~ 318 (574)
..++-...| ..|+++.+......+.....| .+.|.++++|..- ....| +..-+=|.|++ .+......+..++
T Consensus 355 R~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~-~~~PtY~fa~~vd-D~~~g--IThvlRg~e~~-~~t~~q~~l~~~l 429 (722)
T PLN02907 355 RGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKY-KVYPTYDFACPFV-DALEG--VTHALRSSEYH-DRNAQYYRILEDM 429 (722)
T ss_pred EEEcccCCCCCCcccCEEEEecCCcccccCCcc-ceeeccCCceEEE-cccCC--CceEeecHhhh-hChHHHHHHHHHc
Confidence 111111112 257766654322222223344 5677777665211 01112 12222345533 2333344555666
Q ss_pred cCCCCceEEEEeeEEEeCCccccccc-------Cce--------eehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHHH
Q 008191 319 CNNSHISYWIHNGFVTIDSEKMSKSL-------GNF--------FTIRQVME-LYHPLALRLFLIGT-HYRSPINYSVVQ 381 (574)
Q Consensus 319 ~~~~~~~~~~h~g~v~~~G~KMSKS~-------Gn~--------i~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~~ 381 (574)
+.+.| ++ .|.+++.++|.||||++ |-+ .|++.+.. .|.+++||=|++.. .-..+..|+++.
T Consensus 430 g~~~p-~~-~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~ 507 (722)
T PLN02907 430 GLRKV-HI-WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDK 507 (722)
T ss_pred CCCCC-ee-EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHH
Confidence 65544 44 45688999999999998 322 24555543 59999999999986 557889999999
Q ss_pred HHHHHHH
Q 008191 382 LESASER 388 (574)
Q Consensus 382 l~~a~~~ 388 (574)
|....+.
T Consensus 508 l~~~nr~ 514 (722)
T PLN02907 508 LWTINKK 514 (722)
T ss_pred HHHHHHH
Confidence 8877654
No 85
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.32 E-value=5.1e-11 Score=117.27 Aligned_cols=207 Identities=17% Similarity=0.179 Sum_probs=141.0
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|++++...++|- +.-.++.=++|.|.. .-...+.+.+.++|+.||+. .
T Consensus 7 APsPtG~lHlG~~~~al~~~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~-w 67 (238)
T cd00807 7 PPEPNGYLHIGHAKAILLNFGYAKK-----YGGRCNLRFDDTNPE-------------KEEEEYVDSIKEDVKWLGIK-P 67 (238)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEecCCCCc-------------ccchHHHHHHHHHHHHcCCC-C
Confidence 5999999999999999999999886 334577778887732 23346789999999999996 5
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcccccC
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKE 262 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~ 262 (574)
|-..+.|++.+...+..++|+++|.+|.. + ..|. +|.+
T Consensus 68 D~~~~QS~r~~~Y~~~~~~L~~~g~aY~~-------------~-----------~~~~------------~~~i------ 105 (238)
T cd00807 68 YKVTYASDYFDQLYEYAEQLIKKGKAYVH-------------H-----------RTGD------------KWCI------ 105 (238)
T ss_pred CCceecccCHHHHHHHHHHHHHcCCeecC-------------C-----------CCCC------------CEEE------
Confidence 65557789999999999999999999980 0 0000 1111
Q ss_pred CCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCccccc
Q 008191 263 GEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSK 342 (574)
Q Consensus 263 g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSK 342 (574)
+|.+++.|+.- ....| ++.-+=|.|++ +...-.+....+++..+|. + +|.+++..+|.||||
T Consensus 106 ------------~ptY~lA~vVD-D~~~g--IThVvRG~D~l-~~t~~Q~~l~~aLg~~~P~-~-~~~~hln~~g~kLSK 167 (238)
T cd00807 106 ------------YPTYDFAHPIV-DSIEG--ITHSLCTLEFE-DRRPSYYWLCDALRLYRPH-Q-WEFSRLNLTYTVMSK 167 (238)
T ss_pred ------------EeccccceEee-ccccC--CCeEEechhhh-cCCHHHHHHHHHcCCCCCc-e-eEEEEECCCCCCccC
Confidence 25555443211 01122 22333467754 3333445566677666543 3 355788889999999
Q ss_pred ccCc------ee---------ehhhhhh-ccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH
Q 008191 343 SLGN------FF---------TIRQVME-LYHPLALRLFLIGT-HYRSPINYSVVQLESASER 388 (574)
Q Consensus 343 S~Gn------~i---------~~~d~l~-~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~ 388 (574)
+.+- .+ ++..+.. .+.|++++=|++.. --.++..|+++.|....+.
T Consensus 168 R~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~ 230 (238)
T cd00807 168 RKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRK 230 (238)
T ss_pred cCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Confidence 9852 11 3344333 68999999999986 4568999999988765543
No 86
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.32 E-value=3.9e-11 Score=131.53 Aligned_cols=255 Identities=16% Similarity=0.132 Sum_probs=155.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||||++++...++|.. .| .++.=+||.|. ..-...|.+.+.++|+.||+. +
T Consensus 58 APsPtGyLHIGharaAllN~l~Ar~~--gG---~~iLRiEDTDp-------------~R~~~e~~d~IleDL~WLGl~-w 118 (601)
T PTZ00402 58 PPEASGFLHIGHAKAALINSMLADKY--KG---KLVFRFDDTNP-------------SKEKEHFEQAILDDLATLGVS-W 118 (601)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHh--CC---EEEEEEcCCCC-------------cccCHHHHHHHHHHHHHCCCC-C
Confidence 59999999999999999999999852 33 56667777763 223447889999999999996 5
Q ss_pred CC-cccccccHHHHHHHHHHHHHCCceeeecCceeecCCC----------CCCcccccCc-cc---ccccCCC-----cc
Q 008191 183 SV-EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK----------FPEYGQLSGR-KL---EDNRAGE-----RV 242 (574)
Q Consensus 183 d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~----------~~~yg~Ls~~-~~---~~~~~g~-----~v 242 (574)
|. ..+.|++.+...++.++|+++|.||.- +|... -..|-.++.. .+ ..+..|. .+
T Consensus 119 De~~~~QSdr~d~y~e~a~~Li~~G~AY~c-----~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~ 193 (601)
T PTZ00402 119 DVGPTYSSDYMDLMYEKAEELIKKGLAYCD-----KTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETC 193 (601)
T ss_pred CCceeeccccHHHHHHHHHHHHHcCCEEEe-----cCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceE
Confidence 54 457889999999999999999999942 22211 0122222110 00 1111111 10
Q ss_pred -----ccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhh
Q 008191 243 -----AVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCA 317 (574)
Q Consensus 243 -----~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a 317 (574)
++...-.+..|+++.+......+.-...| .+.|.++++|..- ....| +..-+=|.|+. ++......+..+
T Consensus 194 lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~-dgyPtYdfA~vVD-D~l~g--ITHvlRg~E~l-~~tp~q~~L~~a 268 (601)
T PTZ00402 194 LRAKISVDNENKAMRDPVIYRVNLTPHARQGTKY-KAYPTYDFCCPII-DSVEG--VTHALRTNEYH-DRNDQYYWFCDA 268 (601)
T ss_pred EEEecccCCCCCCccCCEEEEEcCCcccccCCCC-ceeeccCcceeeE-ccccC--CceEeechhhh-hCcHHHHHHHHH
Confidence 11111112357776654211111000112 3567666665211 01112 22223355644 444455566667
Q ss_pred ccCCCCceEEEEeeEEEeCCcccccccCce---------------eehhhhh-hccChhhHHHHhhcc-CCCCCCCCCHH
Q 008191 318 ACNNSHISYWIHNGFVTIDSEKMSKSLGNF---------------FTIRQVM-ELYHPLALRLFLIGT-HYRSPINYSVV 380 (574)
Q Consensus 318 ~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~d~l-~~~~~d~lR~~ll~~-~~~~~~~fs~~ 380 (574)
++..+| .+ .|.+.+..+|.||||+.+.- .|+.-+. ..|.++++|=|+... --.++..|+++
T Consensus 269 Lg~~~P-~~-~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~ 346 (601)
T PTZ00402 269 LGIRKP-IV-EDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWS 346 (601)
T ss_pred hCCCCc-eE-EEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHH
Confidence 765544 34 67788888999999998751 1222222 369999999999986 55789999999
Q ss_pred HHHHHHHH
Q 008191 381 QLESASER 388 (574)
Q Consensus 381 ~l~~a~~~ 388 (574)
.|....+.
T Consensus 347 ~L~~~nr~ 354 (601)
T PTZ00402 347 KLWYFNTQ 354 (601)
T ss_pred HHHHHHHH
Confidence 98877654
No 87
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.30 E-value=6.1e-11 Score=117.49 Aligned_cols=188 Identities=19% Similarity=0.190 Sum_probs=128.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|+++....++|- +.-.++.-++|.|. ..-...+.+.+.++++.|||. +
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar~-----~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dL~wlGl~-~ 67 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFARK-----HGGKFILRIEDTDQ-------------ERSVPEAEEAILEALKWLGLD-W 67 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCeEEEEECcCCC-------------CCCchHHHHHHHHHHHHcCCC-C
Confidence 5999999999999999999998885 23367777788663 112236778899999999996 5
Q ss_pred CC---------cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccc
Q 008191 183 SV---------EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPAD 253 (574)
Q Consensus 183 d~---------~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~D 253 (574)
|. ....|++.+...++.++|+++|
T Consensus 68 d~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g----------------------------------------------- 100 (239)
T cd00808 68 DEGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG----------------------------------------------- 100 (239)
T ss_pred CcCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC-----------------------------------------------
Confidence 65 4466789999999999999988
Q ss_pred hhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEE
Q 008191 254 FALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV 333 (574)
Q Consensus 254 f~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v 333 (574)
.|.|.+++.++.-- ...| ++.-+-|.|+. .|.....+...+++.++| .| .|...+
T Consensus 101 -------------------dg~ptY~~a~~vDD-~~~~--ithViRG~D~~-~~t~~q~~l~~aLg~~~p-~~-~h~pll 155 (239)
T cd00808 101 -------------------DGFPTYHLANVVDD-HLMG--ITHVIRGEEHL-SSTPKQILLYEALGWEPP-KF-AHLPLI 155 (239)
T ss_pred -------------------CCCcccccHHHHhH-HhcC--CCEEEEChhhh-hChHHHHHHHHHcCCCCC-ce-Eeeccc
Confidence 12333333332211 1122 33345677755 455566677777766544 35 455665
Q ss_pred -EeCCcccccccCceeehhhhhh-ccChhhHHHHhhccCCC---CCCCCCHHHH
Q 008191 334 -TIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYR---SPINYSVVQL 382 (574)
Q Consensus 334 -~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~---~~~~fs~~~l 382 (574)
..+|.|||||.|+ .+++.+.+ .+.|++++.|++..... .+.-++.+.+
T Consensus 156 ~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l 208 (239)
T cd00808 156 LNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEEL 208 (239)
T ss_pred cCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHH
Confidence 5689999999999 68877764 68999999998864332 2234555543
No 88
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.29 E-value=7.2e-11 Score=126.06 Aligned_cols=237 Identities=15% Similarity=0.161 Sum_probs=144.0
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|++++...++|. +.=.|+.=|+|.|. ......+.+.+.++|+.||+. .
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~-----~gG~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WlGl~-w 65 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ-----QNEDFLIRIEDTDK-------------ERNIEGKDKEILEILNLFGIS-W 65 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCC-------------CcCChHHHHHHHHHHHHcCCC-C
Confidence 4899999999999999999999886 34457777888774 123346778999999999997 5
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CC----CcccccCcccccccCCCc--c
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FP----EYGQLSGRKLEDNRAGER--V 242 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~----~yg~Ls~~~~~~~~~g~~--v 242 (574)
|--.+.|++.+.-.+++++|+++|.||.- ||... -+ .|-.++.... +..|.. +
T Consensus 66 De~y~QSeR~~~Y~~~a~~Li~~G~AY~C-----~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~--~~~g~~~~i 138 (433)
T PRK12410 66 DKLVYQSENLKFHRQMAEKLLSEKKAFAC-----FCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEV--LNCNKPFVV 138 (433)
T ss_pred CCCeehhccHHHHHHHHHHHHHcCCeeee-----cCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHH--HhcCCCeEE
Confidence 65667889999999999999999999942 22110 00 1111211100 001111 0
Q ss_pred --ccCC---------------CccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccC
Q 008191 243 --AVDS---------------RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF 305 (574)
Q Consensus 243 --~~~~---------------~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~f 305 (574)
.++. .-....||++.|. .|.|.+|++++.- ....| +...+=|.|++
T Consensus 139 R~k~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~PtY~fA~vVD-D~~mg--IThViRG~d~l- 201 (433)
T PRK12410 139 RLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRA-------------DKTPTYNFACAVD-DMLYD--ISLIIRGEDHV- 201 (433)
T ss_pred EEEcCCCceeeeeccceeEEeccccCCCeEEEcC-------------CCCccccccchhc-hhhcC--CCEEEechhhh-
Confidence 0000 0000113333332 4678888765322 11122 22223467754
Q ss_pred ccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhh-ccChhhHHHHhhccCCC-CCCCCCHHHH
Q 008191 306 PHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYR-SPINYSVVQL 382 (574)
Q Consensus 306 pH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~-~~~~fs~~~l 382 (574)
+.....+.+..|++.++|.. |.|...++ .+|+||||+.|. +++.++.+ .|.|++++=|++.-.+. .+--|+.+.+
T Consensus 202 ~~tp~Qi~Ly~aLg~~~pp~-f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~el 279 (433)
T PRK12410 202 SNTPKQILIREALGYNKEIT-YAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEA 279 (433)
T ss_pred hCcHHHHHHHHHcCCCCCCe-EEEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHH
Confidence 22334445667777665443 47878665 589999999986 57777765 69999999998874221 1223555544
Q ss_pred HH
Q 008191 383 ES 384 (574)
Q Consensus 383 ~~ 384 (574)
.+
T Consensus 280 i~ 281 (433)
T PRK12410 280 IE 281 (433)
T ss_pred HH
Confidence 43
No 89
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.28 E-value=7.7e-11 Score=133.55 Aligned_cols=254 Identities=19% Similarity=0.086 Sum_probs=159.2
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||+|++++...++|- |.=.++.=+||.|.. .-...|.+.+.++|+.||+..+
T Consensus 37 aPsPtG~lHiGhar~alln~~~A~~-----~~G~~~LR~eDTd~~-------------r~~~e~~~~I~~dl~wLG~~wd 98 (771)
T PRK14703 37 PPEPNGYLHIGHAKSILLNFGIARD-----YGGRCHLRMDDTNPE-------------TEDTEYVEAIKDDVRWLGFDWG 98 (771)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCCCCCC-------------cCChHHHHHHHHHHHHcCCCCC
Confidence 6999999999999999999999985 334677778887732 2334788999999999999743
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCCcccccCc-cc---ccccCCC----
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPEYGQLSGR-KL---EDNRAGE---- 240 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~yg~Ls~~-~~---~~~~~g~---- 240 (574)
....+.|+|.+...++.++|+++|.||.- ||... ...|-.++.. ++ +.|..|+
T Consensus 99 ~~~~~qS~~~~~y~~~a~~Li~~G~aY~c-----~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g 173 (771)
T PRK14703 99 EHLYYASDYFERMYAYAEQLIKMGLAYVD-----SVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDG 173 (771)
T ss_pred CCceEeecCHHHHHHHHHHHHHcCCcccC-----cCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCC
Confidence 34467889999999999999999999963 22110 0112222211 11 1233333
Q ss_pred -cc---ccCCCccC--ccchhhcccccCCCCccccCCcC---cCCCCccchhHHHHhhhCCCceeeeccccccCccchHH
Q 008191 241 -RV---AVDSRKKN--PADFALWKSAKEGEPFWESPWGP---GRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENE 311 (574)
Q Consensus 241 -~v---~~~~~k~~--~~Df~lwk~~~~g~~~w~~~WG~---g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~ 311 (574)
.+ ..+-...| ..|+++++......+ ..|. +.|.+++.|..- ....| +..-+-|.|+. .+....
T Consensus 174 ~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~----~~Gd~~~i~PtYdfa~~vd-D~l~g--ITHvlRg~E~~-~~~~~~ 245 (771)
T PRK14703 174 AHVLRAKIDMSSPNMKLRDPLLYRIRHAHHY----RTGDEWCIYPMYDFAHPLE-DAIEG--VTHSICTLEFE-NNRAIY 245 (771)
T ss_pred CeEEEEEeeccCCcccCCCCEEEEEcCCCCC----CcCCCCCcCCCccccceee-ccccC--CcEEEecHhhh-hccHHH
Confidence 11 11111222 358888875322122 1333 367777665211 11122 22222355533 233334
Q ss_pred HHHHhhccCCCC-ceEEEEeeEEEeCCccccccc-------Ccee--------ehhhhhh-ccChhhHHHHhhcc-CCCC
Q 008191 312 IAQSCAACNNSH-ISYWIHNGFVTIDSEKMSKSL-------GNFF--------TIRQVME-LYHPLALRLFLIGT-HYRS 373 (574)
Q Consensus 312 ~A~~~a~~~~~~-~~~~~h~g~v~~~G~KMSKS~-------Gn~i--------~~~d~l~-~~~~d~lR~~ll~~-~~~~ 373 (574)
..+..++++.++ +.+ ++.+++.+.|.|||||+ |-+- |+..+.+ .|.|++||-|++.. --..
T Consensus 246 ~~l~~~l~~~~~~P~~-~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~ 324 (771)
T PRK14703 246 DWVLDHLGPWPPRPRQ-YEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKT 324 (771)
T ss_pred HHHHHHhCCCCCCcce-eEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCcc
Confidence 455667755433 444 46799999999999998 4331 4555554 69999999999986 4467
Q ss_pred CCCCCHHHHHHHHHH
Q 008191 374 PINYSVVQLESASER 388 (574)
Q Consensus 374 ~~~fs~~~l~~a~~~ 388 (574)
+..++++.|....+.
T Consensus 325 ~~~i~~~~L~~~~R~ 339 (771)
T PRK14703 325 NSTVDIGVLEFAIRD 339 (771)
T ss_pred CceecHHHHHHHHHH
Confidence 889999998887653
No 90
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.25 E-value=1.1e-10 Score=127.11 Aligned_cols=255 Identities=18% Similarity=0.149 Sum_probs=158.1
Q ss_pred CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 94 EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
+|+|. .=-.|.|+|++||||||++++...++|. +.=.++.=++|.|. ..-...|.+.+.++
T Consensus 49 ~gkv~-tRFaPsPtG~LHiGharaalln~~~Ar~-----~gG~~iLRiEDTDp-------------~r~~~e~~~~I~~d 109 (574)
T PTZ00437 49 GGKPY-FRFPPEPNGFLHIGHAKSMNLNFGSARA-----HGGKCYLRYDDTNP-------------ETEEQVYIDAIMEM 109 (574)
T ss_pred CCcEE-EEeCCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEECCCCc-------------cccChHHHHHHHHH
Confidence 34443 3346999999999999999999999986 33456667777762 23445788999999
Q ss_pred HHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC----------CCCcccccCcc----cccccCC
Q 008191 174 MVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK----------FPEYGQLSGRK----LEDNRAG 239 (574)
Q Consensus 174 l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~----------~~~yg~Ls~~~----~~~~~~g 239 (574)
|+.||+. +|..+..|+|.+.+.++.++|+++|.||.- ||... ...|-.++... .++|..|
T Consensus 110 L~wLGi~-~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C-----~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g 183 (574)
T PTZ00437 110 VKWMGWK-PDWVTFSSDYFDQLHEFAVQLIKDGKAYVD-----HSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQG 183 (574)
T ss_pred HHHcCCC-CCCCCcCchhHHHHHHHHHHHHHcCCEEEc-----CCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhc
Confidence 9999997 677778899999999999999999999953 22211 01111121110 1122222
Q ss_pred -----Ccc---ccCCCccCc--cchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCc---
Q 008191 240 -----ERV---AVDSRKKNP--ADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP--- 306 (574)
Q Consensus 240 -----~~v---~~~~~k~~~--~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fp--- 306 (574)
+.| ..+....|+ .|++..+-.....+.=-..| .+.|.++++| ++|=|..|+-|+.-
T Consensus 184 ~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~-~iyPtYdFa~----------~vdD~l~gITHvlct~E 252 (574)
T PTZ00437 184 RYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW-CIYPSYDFTH----------CLIDSLEDIDYSLCTLE 252 (574)
T ss_pred ccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce-EEEccCcccc----------eeechhcCCCEEeeech
Confidence 221 112112232 45554432211111111234 4577776655 34445556655541
Q ss_pred ---cchH--HHHHHhhccCCCCceEEEEeeEEEeCCcccccccCce---------------eehhhhhh-ccChhhHHHH
Q 008191 307 ---HHEN--EIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNF---------------FTIRQVME-LYHPLALRLF 365 (574)
Q Consensus 307 ---H~~~--~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~d~l~-~~~~d~lR~~ 365 (574)
+.+- |+ ..+++...|. . .+.+-++++|.|||||+... .|+..+.+ .|.|++||=|
T Consensus 253 f~~r~~~y~wl--~~~l~l~~p~-~-~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f 328 (574)
T PTZ00437 253 FETRRESYFWL--LEELNLWRPH-V-WEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRF 328 (574)
T ss_pred hhcccHHHHHH--HHHhCCcccc-e-EeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHH
Confidence 1111 33 2344333222 3 34577889999999999873 45666554 6999999999
Q ss_pred hhcc-CCCCCCCCCHHHHHHHHHH
Q 008191 366 LIGT-HYRSPINYSVVQLESASER 388 (574)
Q Consensus 366 ll~~-~~~~~~~fs~~~l~~a~~~ 388 (574)
++.. --+++..++++.|.+..+.
T Consensus 329 ~~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 329 CELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred HHHhCCCccceEeeHHHHHHHHHH
Confidence 9986 4467889999998887654
No 91
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.25 E-value=2.2e-10 Score=124.28 Aligned_cols=246 Identities=17% Similarity=0.122 Sum_probs=146.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|+++....++|- +. =.|+.=|+|.|. ......+.+.+.++|+.||+. +
T Consensus 10 APSPTG~lHiG~artAL~n~l~Ar~--~g---G~fiLRIEDTD~-------------~R~~~~~~~~i~~~L~WLGl~-w 70 (513)
T PRK14895 10 APSPTGFLHIGSARTALFNYLFARH--HN---GKFLLRIEDTDK-------------ERSTKEAVEAIFSGLKWLGLD-W 70 (513)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH--cC---CEEEEEECCCCc-------------cccChHHHHHHHHHHHHcCCC-C
Confidence 4899999999999999999999984 23 346667777763 224457889999999999997 4
Q ss_pred C-CcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCCc----ccccCcccccccCCCc--
Q 008191 183 S-VEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPEY----GQLSGRKLEDNRAGER-- 241 (574)
Q Consensus 183 d-~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~y----g~Ls~~~~~~~~~g~~-- 241 (574)
| --.+.|++.+.-.++.++|+++|.+|.- ||... .+.| -.++.. ....|..
T Consensus 71 De~py~QSeR~~~Y~~~a~~Li~~G~AY~C-----fCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~---~~~~~~~~~ 142 (513)
T PRK14895 71 NGEVIFQSKRNNLYKEAALKLLQNGKAYYC-----FTRQEEIERQRQQALENKQHFIFNSEWRDKDPS---IYPTDIKPV 142 (513)
T ss_pred CCCceeEeCcHHHHHHHHHHHHHcCCeEEe-----cCcHHHHHHHHHhhhccCCCCCCChhhcccChh---hhhcCCCee
Confidence 5 3456789999999999999999999942 22221 0111 111110 0000110
Q ss_pred cccCCCccCccchhhcccccCCCCcccc----C----CcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHH
Q 008191 242 VAVDSRKKNPADFALWKSAKEGEPFWES----P----WGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIA 313 (574)
Q Consensus 242 v~~~~~k~~~~Df~lwk~~~~g~~~w~~----~----WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A 313 (574)
+.+..... .-..|...-.|++.++. + -..|.|.+|..+... ....|.+ --+-|.|++ .|....++
T Consensus 143 iR~k~p~~---~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVD-D~~m~it--hVIRG~d~~-~~t~~q~~ 215 (513)
T PRK14895 143 IRLKTPRE---GSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVD-DHDMGIT--HIIRGDDHL-TNAARQLA 215 (513)
T ss_pred EEEEcCCC---CceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHHH-HHhcCCC--EEEECchHh-hhHHHHHH
Confidence 00000000 00011111112221111 1 124668888765432 1223433 333788854 33344556
Q ss_pred HHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhh-ccChhhHHHHhhcc--CCCCCCCCCHHHHHHH
Q 008191 314 QSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT--HYRSPINYSVVQLESA 385 (574)
Q Consensus 314 ~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~--~~~~~~~fs~~~l~~a 385 (574)
...+++..+| .+.|..+|+ .+|.||||+.|. +.+.++.+ .|-|++++=|++.- .+...--|+.+.+.+.
T Consensus 216 l~~aLG~~~p--~~~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~~ 288 (513)
T PRK14895 216 IYQAFGYAVP--SMTHIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAIDW 288 (513)
T ss_pred HHHHcCCCCC--eEEEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHhh
Confidence 6667765443 458889988 799999999998 46777665 69999999888853 2333335777766543
No 92
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.21 E-value=2.2e-10 Score=124.48 Aligned_cols=257 Identities=18% Similarity=0.122 Sum_probs=146.3
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||||++++...++|- +.=.++.=+||-|. ..-...|.+.+.++|+.||+...
T Consensus 6 aPsPtG~LHiG~ar~al~n~~~A~~-----~~G~~iLRieDTd~-------------~r~~~e~~~~I~~dL~wLG~~~d 67 (522)
T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGYAKY-----YNGTCNLRFDDTNP-------------VKEDPEYVESIKRDVEWLGFKWE 67 (522)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEEcCCCc-------------ccCChHHHHHHHHHHHHcCCCCC
Confidence 5999999999999999999999985 33456777788774 12334788999999999999743
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCCcccccCcc-c---ccccCCCc---
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPEYGQLSGRK-L---EDNRAGER--- 241 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~yg~Ls~~~-~---~~~~~g~~--- 241 (574)
+...+.|+|.+...++.++|+++|.||.- ||... ...|-.++... + +.|..|+.
T Consensus 68 ~~~~~qS~~~~~~~~~a~~Li~~G~AY~c-----~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g 142 (522)
T TIGR00440 68 GKIRYSSDYFDELYRYAEELIKKGLAYVD-----ELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEG 142 (522)
T ss_pred CCceEccccHHHHHHHHHHHHHcCCEEee-----cCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCC
Confidence 55567889999999999999999999963 22110 00122222110 1 12333331
Q ss_pred --c---ccCCCccCc--cchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHH
Q 008191 242 --V---AVDSRKKNP--ADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314 (574)
Q Consensus 242 --v---~~~~~k~~~--~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~ 314 (574)
+ .++....|+ .|+++.+-.....+-=-..| ...|.++++|..- ....| +..-.=|.|+. .+....-+.
T Consensus 143 ~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~-~iyPtYdfa~~vd-D~l~g--ITHviRg~E~~-~nt~~Y~~~ 217 (522)
T TIGR00440 143 KAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKW-CIYPMYDFTHCIS-DAMEN--ITHSLCTLEFQ-DNRRLYDWV 217 (522)
T ss_pred CeEEEEeCcCCCCCceEeeeeEEEEecCCCCCCCCCe-eEEeCcCCceeeh-hccCC--CceEeecHhhh-hcHHHHHHH
Confidence 1 111111122 45554433211111000122 1266666655211 11112 11111234422 111111122
Q ss_pred HhhccCCCCceEEEEeeEEEeCCcccccccCce---------------eehhhhhh-ccChhhHHHHhhccCCC-CCCCC
Q 008191 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNF---------------FTIRQVME-LYHPLALRLFLIGTHYR-SPINY 377 (574)
Q Consensus 315 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~d~l~-~~~~d~lR~~ll~~~~~-~~~~f 377 (574)
...++....+.+ ++.+++.++|.||||+++.. .|+..+.+ .|.|++||=|++..... .+...
T Consensus 218 ~~~l~~~~~P~~-~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~ 296 (522)
T TIGR00440 218 LDNIHIFPRPAQ-YEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNI 296 (522)
T ss_pred HHhcCccCCCce-EEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCce
Confidence 323332212333 25678889999999999874 37777775 69999999999986544 33345
Q ss_pred CHHHHHHHHHH
Q 008191 378 SVVQLESASER 388 (574)
Q Consensus 378 s~~~l~~a~~~ 388 (574)
++..+.+..+.
T Consensus 297 e~~~l~~~~r~ 307 (522)
T TIGR00440 297 EVVRLESCIRE 307 (522)
T ss_pred ehhhHHHHHHH
Confidence 66666665543
No 93
>PLN02627 glutamyl-tRNA synthetase
Probab=99.18 E-value=5e-10 Score=121.76 Aligned_cols=239 Identities=19% Similarity=0.200 Sum_probs=143.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|++++...++|- +.=.|+.=|+|.|. .-....+.+.+.++|+.|||. .
T Consensus 51 APSPTG~LHiG~aRtAL~n~l~Ar~-----~gG~fiLRIEDTD~-------------~R~~~e~~~~I~~~L~WLGl~-w 111 (535)
T PLN02627 51 APSPTGNLHVGGARTALFNYLFARS-----KGGKFVLRIEDTDL-------------ARSTKESEEAVLRDLKWLGLD-W 111 (535)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----hCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHcCCC-C
Confidence 4889999999999999999999884 33457777888774 123447789999999999996 4
Q ss_pred CCc---------ccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCC----cccccCccc-c
Q 008191 183 SVE---------PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPE----YGQLSGRKL-E 234 (574)
Q Consensus 183 d~~---------~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~----yg~Ls~~~~-~ 234 (574)
|.- .+.|++.+.-.++.++|+++|.||. .||... .+. |-.++.... +
T Consensus 112 Degp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~-----CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~ 186 (535)
T PLN02627 112 DEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYP-----CFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQA 186 (535)
T ss_pred CcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeee-----ccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHH
Confidence 533 3567899999999999999999994 122211 011 111221100 0
Q ss_pred cccCCCccc--cCC------------------CccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCc
Q 008191 235 DNRAGERVA--VDS------------------RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSF 294 (574)
Q Consensus 235 ~~~~g~~v~--~~~------------------~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~ 294 (574)
....|.... +.. .-....||+++|. .|.|.+|+.|+.- ....| +
T Consensus 187 ~~~~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~-------------DG~PtY~fA~vVD-D~~mg--I 250 (535)
T PLN02627 187 ELAKGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRS-------------NGQPVYNFCVAVD-DATMG--I 250 (535)
T ss_pred HHhCCCCceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEec-------------CCCccccccceec-ccccC--C
Confidence 001111100 000 0001123333332 4678888766321 01112 2
Q ss_pred eeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhh-ccChhhHHHHhhccCCC
Q 008191 295 DIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYR 372 (574)
Q Consensus 295 dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~ 372 (574)
...+=|.|++ +.....+.+..|++..+| . |.|...++. +|+||||+.|. +++.++.+ .|.|++++=|++.-.+.
T Consensus 251 THViRG~D~l-~nTpkQi~ly~aLg~~~P-~-f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LGws 326 (535)
T PLN02627 251 THVIRAEEHL-PNTLRQALIYKALGFPMP-R-FAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLGWN 326 (535)
T ss_pred cEEEechhhh-cChHHHHHHHHHcCCCCC-e-EEEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 2223366643 222233455567766655 3 478888775 78899999876 57777765 69999999888764332
Q ss_pred ---CCCCCCHHHHHHH
Q 008191 373 ---SPINYSVVQLESA 385 (574)
Q Consensus 373 ---~~~~fs~~~l~~a 385 (574)
.+--|+.+.+.+.
T Consensus 327 ~~~~~e~~~~~eli~~ 342 (535)
T PLN02627 327 DGTENEIFTLEELVEK 342 (535)
T ss_pred CCCCCCcCCHHHHHHh
Confidence 2334777666544
No 94
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.17 E-value=3.7e-10 Score=115.33 Aligned_cols=219 Identities=16% Similarity=0.090 Sum_probs=133.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|.|++||||+|++++...++|- +.-.++.=|+|.|.. .-...+.+.+.++|+.||+. .
T Consensus 11 APSPTG~LHlG~~rtAL~n~l~Ar~-----~~G~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wlGl~-w 71 (299)
T PRK05710 11 APSPSGPLHFGSLVAALGSWLDARA-----HGGRWLLRIEDIDPP-------------REVPGAADAILADLEWLGLH-W 71 (299)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH-----cCCEEEEEECcCCCC-------------ccchHHHHHHHHHHHHCCCC-C
Confidence 6999999999999999999888876 345677788888741 12346789999999999997 5
Q ss_pred CC-cccccccHHHHHHHHHHHHHCCceeeec---------C------ceeecCCCCCCcccccCccc-------------
Q 008191 183 SV-EPRVSDHMPHIIDMITQILDNGFAYRVD---------G------DVYFSVDKFPEYGQLSGRKL------------- 233 (574)
Q Consensus 183 d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~---------~------~v~f~~~~~~~yg~Ls~~~~------------- 233 (574)
|- ..+.|++.+...++.++|+++|.+|.-. . ..-|+- .|-.++....
T Consensus 72 De~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g----~cr~~~~~~~~~~~iRlk~~~~~ 147 (299)
T PRK05710 72 DGPVLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPG----TCRDLLHGPRNPPAWRLRVPDAV 147 (299)
T ss_pred CCCceEeeccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCC----ccccCCccccCCceEEEEcCCCc
Confidence 53 4467899999999999999999999420 0 001111 1111211000
Q ss_pred ---ccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchH
Q 008191 234 ---EDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHEN 310 (574)
Q Consensus 234 ---~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~ 310 (574)
.+...|+.. . .......||++++. .|.|.+|++|+.- ....| +..-+=|.|++ +....
T Consensus 148 ~~~~D~~~G~~~-~-~~~~~~~D~Vi~R~-------------dg~ptY~lA~vVD-D~~~g--IThVvRG~D~l-~~t~~ 208 (299)
T PRK05710 148 IAFDDRLQGRQH-Q-DLALAVGDFVLRRA-------------DGLFAYQLAVVVD-DALQG--VTHVVRGADLL-DSTPR 208 (299)
T ss_pred eEEEEecceeEe-e-CCCCCCCCEEEEec-------------CCCccccchhHHh-cccCC--CCEEEeChhhh-hcCHH
Confidence 000001000 0 00001235555543 3678888876432 11233 22233467754 33344
Q ss_pred HHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 311 EIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 311 ~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
.+.+..+++.++| .| .|...++ .+|+||||+.|. ..+++ ..+.|+ +..++..-
T Consensus 209 Q~~l~~aLg~~~P-~y-~H~pll~~~~g~kLSKr~~~-~~i~~--~g~~p~-l~~~l~~l 262 (299)
T PRK05710 209 QIYLQQLLGLPTP-RY-LHLPLVLNADGQKLSKQNGA-PALDA--AGPLPV-LAAALRFL 262 (299)
T ss_pred HHHHHHHcCCCCC-eE-EEeecccCCCCCcccccCCc-cchhh--cCcCHH-HHHHHHHc
Confidence 4556667766654 34 7888774 689999999876 45555 688888 66665553
No 95
>PLN02859 glutamine-tRNA ligase
Probab=99.16 E-value=3.4e-10 Score=127.18 Aligned_cols=277 Identities=17% Similarity=0.147 Sum_probs=160.8
Q ss_pred eeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc
Q 008191 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL 155 (574)
Q Consensus 76 l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~ 155 (574)
++.+||...-++.+.- .+|+|.. =-.|.|+|++||||+|++++-..++|.. .=.++.=+||-|.
T Consensus 245 ~~~~~~~~~~~~hl~~-t~g~V~t-RFaPsPtG~LHiGharaallN~~~Ar~~-----~G~~~LRieDTdp--------- 308 (788)
T PLN02859 245 LRPSNTKEILEKHLKA-TGGKVYT-RFPPEPNGYLHIGHAKAMFVDFGLAKER-----GGCCYLRFDDTNP--------- 308 (788)
T ss_pred ccccCcHHHHHHHHhh-cCCceEE-EeCCCCCCcccHHHHHHHHHHHHHHHHh-----CCEEEEEecCCCC---------
Confidence 4455665555555544 3455432 2369999999999999999999999873 3356667777762
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC-----------CCC
Q 008191 156 GEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK-----------FPE 224 (574)
Q Consensus 156 g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~-----------~~~ 224 (574)
..-...|.+.+.++++.||+. ++...+.|+|.+.+.+...+|+++|.||.- ||... ++
T Consensus 309 ----~r~~~e~~~~I~edL~WLG~~-~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C-----~ct~eei~~~R~~~~~sp- 377 (788)
T PLN02859 309 ----EAEKKEYIDHIEEIVEWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSP- 377 (788)
T ss_pred ----CccchHHHHHHHHHHHHcCCC-CCCcccccHhHHHHHHHHHHHHHcCCeEec-----cCCHHHHHHHHhhhccCC-
Confidence 224457889999999999996 566678889998888899999999999963 22210 11
Q ss_pred cccccC----cccccccC-----CCcc---ccCCCccC--ccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhh
Q 008191 225 YGQLSG----RKLEDNRA-----GERV---AVDSRKKN--PADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYL 290 (574)
Q Consensus 225 yg~Ls~----~~~~~~~~-----g~~v---~~~~~k~~--~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~l 290 (574)
|-..+. ...++|.. |+.+ .++....| -.|++..+-.....+-=...|-+ .|.+++.|..- ....
T Consensus 378 ~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~i-yPtYdFA~~vd-D~le 455 (788)
T PLN02859 378 WRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCI-YPSYDYAHCIV-DSLE 455 (788)
T ss_pred CCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEE-Eeccccccccc-cccc
Confidence 111110 00111221 2211 11111112 13554433221111000023322 67776654211 1111
Q ss_pred CCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCce---------------eehhhhhh
Q 008191 291 GHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNF---------------FTIRQVME 355 (574)
Q Consensus 291 G~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~---------------i~~~d~l~ 355 (574)
| +..-.-|.|+. .+..-..-+..+++..+|. + .|.+-+.++|.||||+++.. .|+..+.+
T Consensus 456 g--ITHvLRg~E~~-~~~~~y~wl~~aLg~~~P~-~-~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRr 530 (788)
T PLN02859 456 N--ITHSLCTLEFE-TRRASYYWLLDSLGLYQPY-V-WEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRR 530 (788)
T ss_pred C--CceEeechhhh-cCCHHHHHHHHHcCCCCCc-E-EeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHH
Confidence 2 11112244422 2233333455666655443 3 57788889999999999764 35666654
Q ss_pred -ccChhhHHHHhhccCCC-CCC-CCCHHHHHHHH
Q 008191 356 -LYHPLALRLFLIGTHYR-SPI-NYSVVQLESAS 386 (574)
Q Consensus 356 -~~~~d~lR~~ll~~~~~-~~~-~fs~~~l~~a~ 386 (574)
.|.|++||=|++...+. .+. .|+++.|..+.
T Consensus 531 rG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~ 564 (788)
T PLN02859 531 RGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHI 564 (788)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhC
Confidence 69999999999986443 344 69999985443
No 96
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=6.4e-10 Score=120.09 Aligned_cols=230 Identities=20% Similarity=0.211 Sum_probs=134.5
Q ss_pred cCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 102 cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
..|.|+|++||||||++++-..++|. |.=.|+.=++|.|. .--...+.+.+.++|+-||+.
T Consensus 14 FAPsPtG~LHiG~artAl~N~~~Ar~-----~~G~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WLGl~- 74 (472)
T COG0008 14 FAPSPTGYLHIGHARTALLNYLYARK-----YGGKFILRIEDTDP-------------ERETPEAEDAILEDLEWLGLD- 74 (472)
T ss_pred ECcCCCCccchHHHHHHHHHHHHHHH-----hCCEEEEEecCCCC-------------CCCCHHHHHHHHHHHHhcCCC-
Confidence 46999999999999999999999987 33346667777773 222336778999999999997
Q ss_pred CCC-cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCC--------------C-Cc----ccccCcccccccC-CC
Q 008191 182 PSV-EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF--------------P-EY----GQLSGRKLEDNRA-GE 240 (574)
Q Consensus 182 ~d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~--------------~-~y----g~Ls~~~~~~~~~-g~ 240 (574)
.|- ..+.|++.+...+++++|+++|.||.- ||.... + .| -.|... +.+.. |+
T Consensus 75 wde~~~~QS~r~~~Y~~~~~~Li~~G~AY~c-----~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~--~~~~~~~~ 147 (472)
T COG0008 75 WDEGPYYQSERFDIYYEYAEKLIEKGKAYVC-----YCTPEELEEMRELRGALGEPPPSYDRDERNLTLF--EKMADLGE 147 (472)
T ss_pred CCCceeehhhhHHHHHHHHHHHHHCCCeEEe-----cCCHHHHHHHHHHHhhcCCCCCCCCchhhccchH--HHHhhccc
Confidence 565 578899999999999999999999952 333210 0 11 111110 00111 11
Q ss_pred ---c-c--ccCCCccCccchhhcccccCCCCcccc-CCc------CcCCCCccchhHHHHhhhCCCceeeeccccccCcc
Q 008191 241 ---R-V--AVDSRKKNPADFALWKSAKEGEPFWES-PWG------PGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPH 307 (574)
Q Consensus 241 ---~-v--~~~~~k~~~~Df~lwk~~~~g~~~w~~-~WG------~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH 307 (574)
. + ..+....++ .|.-|-. |++.+.. -++ .|.|.++++|.. .....| +..-+=|.|++ ..
T Consensus 148 ~~~~viR~k~~~~~~~~-~~~D~v~---g~i~~~~~~~~dv~~r~dg~ptY~favvv-DD~~mg--ITHviRG~d~~-~n 219 (472)
T COG0008 148 GGPAVVRLKIPMAHPGP-VFRDLVR---GRIVFAPKHPDFVILRYDGYPTYNFAVVV-DDHLMG--ITHVLRGEDHL-DN 219 (472)
T ss_pred CCCeEEEEeCCCCCCCC-cccccee---eeEecCccCCcceeecCCCCcccceeeee-chhhcC--CceEEechhhc-cC
Confidence 0 0 111001111 1111110 1111111 111 244555554321 111223 22223477755 33
Q ss_pred chHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhh-hccChhhHHHHhhc
Q 008191 308 HENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVM-ELYHPLALRLFLIG 368 (574)
Q Consensus 308 ~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l-~~~~~d~lR~~ll~ 368 (574)
....+.+..+++.++|. | .|.+.++. +|+|||||.| .+.+.+.. ..|.+.+++-++..
T Consensus 220 t~~q~~l~~~lg~~~P~-~-~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~al 279 (472)
T COG0008 220 TPRQIWLYEALGWPPPV-Y-AHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLAL 279 (472)
T ss_pred CHHHHHHHHHcCCCCCc-E-EEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHH
Confidence 44555666777666543 4 68899887 4669999999 66666543 57888888887754
No 97
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.12 E-value=8.9e-10 Score=111.31 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=73.1
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|++++...++|- +.=.++.=|+|.|.. .....+.+.+.++|+.|||. +
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar~-----~gG~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wLGl~-w 66 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDARA-----HGGRWLVRIEDLDPP-------------REVPGAADDILRTLEAYGLH-W 66 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH-----hCCEEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCC-C
Confidence 4899999999999999999999984 334577778888741 12336778999999999997 5
Q ss_pred CCcc-cccccHHHHHHHHHHHHHCCceee
Q 008191 183 SVEP-RVSDHMPHIIDMITQILDNGFAYR 210 (574)
Q Consensus 183 d~~~-r~s~~~~~i~~~i~~L~~kG~aY~ 210 (574)
|--+ +.|++.+.-.+++++|+++|.+|.
T Consensus 67 De~~~~QS~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 67 DGEVVYQSQRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCeeeeeCCHHHHHHHHHHHHHcCCEEe
Confidence 5444 788999999999999999999994
No 98
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.97 E-value=3e-09 Score=110.36 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=66.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|++++...++|- ..| .++.=++|.|.. .. ...+.+.+.++|+.||+. +
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar~--~~G---~~iLRieDtD~~---------R~----~~~~~~~i~~~L~wlGl~-~ 67 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFARK--YGG---KFILRIEDTDPE---------RC----RPEFYDAILEDLRWLGLE-W 67 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHHH--TTS---EEEEEEETSSTT---------TC----HHHHHHHHHHHHHHHT----
T ss_pred CCCCCCCcccchhHHHHHHHHHHhc--cCc---eEEEeccccccc---------cc----hhhHHHHHHhheeEEEEe-c
Confidence 5899999999999999999999984 334 466677887742 22 236778899999999997 5
Q ss_pred C-CcccccccHHHHHHHHHHHHHCCceee
Q 008191 183 S-VEPRVSDHMPHIIDMITQILDNGFAYR 210 (574)
Q Consensus 183 d-~~~r~s~~~~~i~~~i~~L~~kG~aY~ 210 (574)
| -..+.|++.+...+++++|+++|.+|.
T Consensus 68 D~~~~~QS~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 68 DYGPYYQSDRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp STCEEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred CCeEEeHHHHHHHHHHHHHHHhhcCCCcc
Confidence 4 455678999999999999999999995
No 99
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.71 E-value=1.2e-07 Score=88.53 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=104.6
Q ss_pred ccChhhHHHHhhccCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhh-hh---------cCCCCChhHHHHHH
Q 008191 356 LYHPLALRLFLIGTHYRSPINYSVVQLESASER-IFYIYQTLHDCEKALSLLDA-AA---------LKDSIPPDTVTSIN 424 (574)
Q Consensus 356 ~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~-l~~l~~~l~~~~~~l~~~~~-~~---------~~~~~~~~l~~~l~ 424 (574)
..|.+++||++|+....++++|+++.+...... .-++.++..|+...+.+... .. ...+.+..++..+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 467899999999999999999999997766543 22566666777666555321 00 01123455777788
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc-----hhhhhHHHHHHHHHHHHHHHhhhcccc
Q 008191 425 KFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK-----KQAMRLESLAALEKTIRNVLTVLGLMS 491 (574)
Q Consensus 425 ~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~l~iLGi~p 491 (574)
.+.+.+..++ .+.+++.++.++.+|...+|.|++....- ....|+.++..+..++...+.+|||.|
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~ 152 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATYLFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEA 152 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 8888889988 88999999999999999999999877521 134688899999999999999999976
No 100
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.59 E-value=4.8e-07 Score=79.48 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Q 008191 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTIND 456 (574)
Q Consensus 377 fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~ 456 (574)
|+++.+....|.+.|+++.+.............+.....+.+++..+.++.+++.++| ++++++.|+..+++++..+|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~ 79 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAALMELVNALYK 79 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHHHH
Confidence 5778888888888888887654321110000001123456788999999999999999 999999999999999999999
Q ss_pred HHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHH
Q 008191 457 LLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQ 500 (574)
Q Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~ 500 (574)
|++...+ ....+...++.++.+| ||+|+.++++|+.
T Consensus 80 ~~~~~~p--------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~ 116 (117)
T cd07958 80 YKKKDAQ--------HAAVLREALETLVLLLAPFAPHIAEELWEE 116 (117)
T ss_pred hhccccc--------hHHHHHHHHHHHHHHHcccchHHHHHHHhh
Confidence 9875432 2345667777777777 8999999988764
No 101
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=98.59 E-value=6e-07 Score=81.63 Aligned_cols=123 Identities=12% Similarity=0.053 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-h---hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008191 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDA-A---ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK 452 (574)
Q Consensus 377 fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~-~---~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~ 452 (574)
||++.+..+.+.+.++|+....+......... . +.....+.++...++++.+.+.++| +.+++.+|+..+++++.
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~i~~~~~ 79 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATALYEFFW 79 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence 78899999999999999988765331111111 0 1112345678888999999999999 99999999999999997
Q ss_pred --HHHHHHHhhhcchh---hh-hHHHHHHHHHHHHHHHhhh-ccccccHHHHHHH
Q 008191 453 --TINDLLHTRKGKKQ---AM-RLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQ 500 (574)
Q Consensus 453 --~~N~~~~~~~~~~~---~~-~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~ 500 (574)
.+|+|++..++|.. .. ....+..+...++.++.+| ||+|+.++++|++
T Consensus 80 ~~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~ 134 (135)
T cd07962 80 NDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQR 134 (135)
T ss_pred HHHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhc
Confidence 79999998876521 11 2334556667777777777 8999999888754
No 102
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=98.55 E-value=3.4e-07 Score=71.95 Aligned_cols=60 Identities=38% Similarity=0.579 Sum_probs=43.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHH
Q 008191 429 DFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYS 495 (574)
Q Consensus 429 ~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~ 495 (574)
+|.+||+||||||.|++.|+++++.+|+..... ....+..+...++.+..+|||....++
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~~~~~~-------~~~~~~~~~~~l~~~~~vLGl~~~~~~ 60 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINRALESN-------DKEDLEALAAALRKLLDVLGLLQEDPE 60 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHCCT-S-S-HH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHHhcccC-------CHHHHHHHHHHHHHHHhcCcCCCCCHH
Confidence 488999999999999999999999999933222 123345567888899999999865544
No 103
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.51 E-value=1.6e-06 Score=76.33 Aligned_cols=114 Identities=10% Similarity=0.027 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHH-HHHHHHHH
Q 008191 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAAL-SDPLKTIN 455 (574)
Q Consensus 377 fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l-~~l~~~~N 455 (574)
|+.+.+....+.+.|+++.+..... ...+.......+++++..++++.+++.++| ++++++.|++.+ +++.+.+|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~~~~~~~~~~~ 76 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE---TEGELEELTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKEGLYELQNDLD 76 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---ccCCccccchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766554211 100111223456889999999999999999 899999999997 99999999
Q ss_pred HHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHH
Q 008191 456 DLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQ 500 (574)
Q Consensus 456 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~ 500 (574)
.|++..+++ .....+...++.++.+| ||+|+.++++|+.
T Consensus 77 ~Y~~~~~~~------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~ 116 (117)
T cd07959 77 WYRERGGAG------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHE 116 (117)
T ss_pred HHHHHhCcc------chHHHHHHHHHHHHHHHcCcchHhHHHHHhh
Confidence 998765532 11234566777777777 8999999998864
No 104
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=98.42 E-value=3.8e-06 Score=75.10 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=70.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchh------hhhHHHHHHHHHHHHHHHhh
Q 008191 413 DSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ------AMRLESLAALEKTIRNVLTV 486 (574)
Q Consensus 413 ~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~------~~~~~~l~~~~~~l~~~l~i 486 (574)
...+.++...++++.+++.++| +++++++|++.++++++.+|+|++..+++.. +.....+..+...++.++.+
T Consensus 35 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~l 113 (129)
T cd07957 35 TEEDEELLEEAEELLEEVAEAM-EELEFRKALEEIMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAIL 113 (129)
T ss_pred CcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999 8999999999999999999999987775421 11233455666677777777
Q ss_pred h-ccccccHHHHHHH
Q 008191 487 L-GLMSTGYSEVLLQ 500 (574)
Q Consensus 487 L-Gi~p~~~~~i~~~ 500 (574)
| ||+|+.++++|+.
T Consensus 114 L~P~~P~~aeei~~~ 128 (129)
T cd07957 114 LSPFMPETAEKILDQ 128 (129)
T ss_pred hcCCCChHHHHHHHh
Confidence 7 8999999988764
No 105
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=98.40 E-value=3.7e-06 Score=80.34 Aligned_cols=125 Identities=17% Similarity=0.098 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008191 377 YSVVQLESASERIFYIYQTLHDCEKALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDP 450 (574)
Q Consensus 377 fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l 450 (574)
|+.+.+.+..+.+.++||+++.+...+...... ......+++++..++++.+.+.++| ++++++.|+..++++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~i~~f 79 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQALNNF 79 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 567888999999999999887765443332110 1123346789999999999999999 899999999999999
Q ss_pred HH--HHHHHHHhhhcch------hhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 451 LK--TINDLLHTRKGKK------QAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 451 ~~--~~N~~~~~~~~~~------~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+. .+|.|++..+++. ...+......+..+++.++.+| ||+|+.++++|+.+.
T Consensus 80 ~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~ 140 (180)
T cd07960 80 CTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLP 140 (180)
T ss_pred HHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcc
Confidence 95 6699999877531 1122233445566777888887 899999999999885
No 106
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=2.6e-06 Score=88.66 Aligned_cols=241 Identities=21% Similarity=0.259 Sum_probs=136.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|.|.+|||-+|+++.-.+++|- +.=.|+--+-|-|.+ -++..-.+.+.++|.-+||. +
T Consensus 39 APSPTGfLHlGgLRTALfNYLfArk-----~gGkFiLRiEDTDq~-------------R~v~gs~e~i~~~L~w~nl~-~ 99 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFARK-----KGGKFILRIEDTDQK-------------RLIRGSEEAIYEDLKWANLD-W 99 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHHh-----cCCeEEEEecccccc-------------ccccchHHHHHHHHHhcCCC-c
Confidence 4889999999999999877766664 344566666666643 12233346788999999996 6
Q ss_pred CCccccc---------ccHHHHHHHHHHHHHCCceeeecCceeecCCC--------------CCC----cccccCccccc
Q 008191 183 SVEPRVS---------DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------------FPE----YGQLSGRKLED 235 (574)
Q Consensus 183 d~~~r~s---------~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------------~~~----yg~Ls~~~~~~ 235 (574)
|--|++. +-.+.-.+..++|++.|.||. .||... -+. |..++......
T Consensus 100 DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr-----CFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~ 174 (524)
T KOG1149|consen 100 DEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR-----CFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ 174 (524)
T ss_pred ccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE-----eccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH
Confidence 7777664 333445688999999999995 344331 111 22343322222
Q ss_pred c-cCCCcccc--CCCccCc--cchhhcccccCCCCccccC--C-------cCcCCCCccchhHHHHhhhCCCceeeeccc
Q 008191 236 N-RAGERVAV--DSRKKNP--ADFALWKSAKEGEPFWESP--W-------GPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301 (574)
Q Consensus 236 ~-~~g~~v~~--~~~k~~~--~Df~lwk~~~~g~~~w~~~--W-------G~g~PgWhiecsam~~~~lG~~~dih~~G~ 301 (574)
+ ..|....+ ...+++| .|.+. |.+.|... - ..|.|.+|++|. +|=|.+|+
T Consensus 175 ~lakg~pf~iRFrl~~~~~~f~DLvy------G~v~~~~d~~~gD~VvmKSDgfPTYHfAnV----------VDDh~M~I 238 (524)
T KOG1149|consen 175 KLAKGTPFTIRFRLPKESPPFTDLVY------GKVNHNVDSNEGDPVVMKSDGFPTYHFANV----------VDDHLMGI 238 (524)
T ss_pred HHhcCCCeeEEEecCCCCCChhhhhh------hhhhccccccCCCcEEEecCCCcceeeeee----------ecchhcch
Confidence 1 12322111 1111111 11111 11112111 1 247899998763 34455555
Q ss_pred cccCccch------HHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhh-ccChhhHHHHhhcc---C
Q 008191 302 DLVFPHHE------NEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT---H 370 (574)
Q Consensus 302 Dl~fpH~~------~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~---~ 370 (574)
-|+--.-| -.+..-.|++..|| ++ .|--.++ .+|.|.||+.|. +.+..+.+ .|=|+++==|++.. .
T Consensus 239 sHViRGeEWlpST~KH~lLYkAfgW~pP-kF-aHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~ 315 (524)
T KOG1149|consen 239 SHVIRGEEWLPSTLKHILLYKAFGWQPP-KF-AHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGF 315 (524)
T ss_pred hheeecchhccccHHHHHHHHHhCCCCC-ce-eeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCc
Confidence 54332222 22344455555544 34 5544443 489999999998 45555554 67788877676663 3
Q ss_pred CCCCCCCCHHHHHHHH
Q 008191 371 YRSPINYSVVQLESAS 386 (574)
Q Consensus 371 ~~~~~~fs~~~l~~a~ 386 (574)
....--|+.+.|.+.-
T Consensus 316 ~~~~~f~sl~eLieqF 331 (524)
T KOG1149|consen 316 RTENEFFSLEELIEQF 331 (524)
T ss_pred ccccccccHHHHHHHh
Confidence 3455567877776653
No 107
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=98.34 E-value=8.1e-06 Score=78.18 Aligned_cols=126 Identities=12% Similarity=0.164 Sum_probs=92.4
Q ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHH--HHhhhhhh------hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHH
Q 008191 377 YSVVQLESASE-RIFYIYQTLHDCEK--ALSLLDAA------ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAAL 447 (574)
Q Consensus 377 fs~~~l~~a~~-~l~~l~~~l~~~~~--~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l 447 (574)
||++.++...+ .+.+|||+++.+.. .+...... ......|++++..++++.+.+.++| ++++++.|++.+
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 78899999888 78899999876643 22211100 1124567899999999999999999 899999999999
Q ss_pred HHHHHHH-HHHHHhhhc----c-hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHH
Q 008191 448 SDPLKTI-NDLLHTRKG----K-KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLRE 503 (574)
Q Consensus 448 ~~l~~~~-N~~~~~~~~----~-~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~ 503 (574)
++++... +.|++..+. . ....+......+..++..++.+| ||+|+.+|++|+.+..
T Consensus 80 ~~f~~~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 80 LEFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 9999866 667776442 1 01122334445667777888887 8999999999998853
No 108
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=98.06 E-value=9.5e-06 Score=61.94 Aligned_cols=55 Identities=40% Similarity=0.485 Sum_probs=42.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhcc
Q 008191 429 DFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGL 489 (574)
Q Consensus 429 ~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi 489 (574)
+|.+||+||||||.|++.++++++.+|++++... . ...+..+...+..++.+||+
T Consensus 1 ~f~~al~DD~NT~~Al~~l~~l~~~~N~~l~~~~--~----~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 1 RFEEAMDDDFNTPEALAVLFELAREINRLLLKAV--D----AEELAALAALLRALGGVLGL 55 (56)
T ss_pred ChHHHhhcccCcHHHHHHHHHHHHHHHHHhhccc--C----HHHHHHHHHHHHHHHhccCC
Confidence 3789999999999999999999999999885321 0 11234456677778888887
No 109
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=2.4e-05 Score=83.47 Aligned_cols=92 Identities=24% Similarity=0.381 Sum_probs=73.1
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
+|-|+|++|||||+.+++ .-|.... |+=..++-+||- .|..=.++|++.+.+|+..|||. +
T Consensus 206 PPEpSGyLHIGHAKAALL----NqYfa~~-~~G~LIvRFDDT-------------NPaKE~~eFe~~IleDl~~LgIk-p 266 (712)
T KOG1147|consen 206 PPEPSGYLHIGHAKAALL----NQYFAQA-YQGKLIVRFDDT-------------NPAKENEEFEDVILEDLSLLGIK-P 266 (712)
T ss_pred CCCCCceeehhhHHHHHH----HHHHHHh-cCceEEEEecCC-------------CcchhhHHHHHHHHHHHHHhCcC-c
Confidence 688999999999998764 4444332 333455556653 34444568999999999999996 8
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecC
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDG 213 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~ 213 (574)
|.++.+|+|-+.|.++..+|+..|-||..+.
T Consensus 267 d~~TyTSDyF~~i~dycv~likeGKAYvDDT 297 (712)
T KOG1147|consen 267 DRVTYTSDYFDEIMDYCVKLIKEGKAYVDDT 297 (712)
T ss_pred ceeeechhhHHHHHHHHHHHHhcCcccccCC
Confidence 9999999999999999999999999998653
No 110
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.96 E-value=0.00014 Score=76.10 Aligned_cols=80 Identities=20% Similarity=0.073 Sum_probs=47.7
Q ss_pred chhHHHHhhhCCCceeeeccccccCccchHHHHHHhhcc------CCCCceEEEEeeEEE----eCCcccccccCc-eee
Q 008191 281 ECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAAC------NNSHISYWIHNGFVT----IDSEKMSKSLGN-FFT 349 (574)
Q Consensus 281 ecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~------~~~~~~~~~h~g~v~----~~G~KMSKS~Gn-~i~ 349 (574)
..+-|+...+=...|+.++|.|+. +|++.-.-....++ ...|.- +|+.++- ++|+|||||.+| .|.
T Consensus 127 YP~lqaaDil~~~~d~vpvG~DQ~-~h~elaRdia~r~n~~~~~~f~~P~~--l~~~~~~~l~gl~~~KMSKS~~~s~I~ 203 (328)
T TIGR00233 127 YPVLQAADILLYQADLVPVGIDQD-QHLELTRDLAERFNKKFKNFFPKPES--LISKFFPRLMGLSGKKMSKSDPNSAIF 203 (328)
T ss_pred chHHHHhhhhhcCCCeeecccccH-HHHHHHHHHHHHhhhhcCcccCCChh--hhccccCCCCCCCCCcCCCCCCCCeEe
Confidence 334555555656788999999986 66654333333332 122332 3444421 346799999997 887
Q ss_pred hhhhhhccChhhHHHHhhc
Q 008191 350 IRQVMELYHPLALRLFLIG 368 (574)
Q Consensus 350 ~~d~l~~~~~d~lR~~ll~ 368 (574)
+.| +++.++=-+.+
T Consensus 204 L~D-----~~e~I~~KI~~ 217 (328)
T TIGR00233 204 LTD-----TPKQIKKKIRK 217 (328)
T ss_pred ecC-----CHHHHHHHHHh
Confidence 766 45556555554
No 111
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=97.84 E-value=7.5e-05 Score=68.97 Aligned_cols=84 Identities=14% Similarity=0.119 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH-HHHH-HHHHHhhhcch-----hhhhHHHHHHHHHHHHHHHhhh-
Q 008191 416 PPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDP-LKTI-NDLLHTRKGKK-----QAMRLESLAALEKTIRNVLTVL- 487 (574)
Q Consensus 416 ~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l-~~~~-N~~~~~~~~~~-----~~~~~~~l~~~~~~l~~~l~iL- 487 (574)
|++++..++++.+.+.++| ++|++..|+..++++ ...+ |.|++..+++. ...+. +...+..+++.++.+|
T Consensus 1 D~~il~~~~~~~~~~~~~~-e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAY-ENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccC
Confidence 3578899999999999999 899999999999997 5666 99999877431 11233 5566777888888887
Q ss_pred ccccccHHHHHHHH
Q 008191 488 GLMSTGYSEVLLQL 501 (574)
Q Consensus 488 Gi~p~~~~~i~~~l 501 (574)
||+|+.++++|+.+
T Consensus 79 P~~P~~aEeiw~~l 92 (153)
T PF08264_consen 79 PFMPFIAEEIWQRL 92 (153)
T ss_dssp TTSHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHh
Confidence 89999999999766
No 112
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.76 E-value=0.0001 Score=79.35 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=45.2
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
+..++.+||.|+.. |...-.=...-.+...+ +-++.-.+ ..+|.|||||.||.|++.| +..+|..++=++++.
T Consensus 185 ~~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (410)
T PRK13354 185 EDVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP--EKTSPYEFYQFWMNI 258 (410)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC--CCCCHHHHHHHHHcC
Confidence 46789999999874 43332222222333332 22332333 3589999999999999877 345677777666654
No 113
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=97.74 E-value=9.2e-05 Score=61.19 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-HH
Q 008191 379 VVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTI-ND 456 (574)
Q Consensus 379 ~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~-N~ 456 (574)
++.|.++.+.+.+|++.+.++. . . .+..+.++|.++|+||||||.|++.|+++++.+ |.
T Consensus 1 ~e~L~~A~~~l~rl~~~l~~~~------------~--~-----~~~~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i~~~ 60 (81)
T cd07955 1 DEVLADAEARLARWRSAVALPD------------G--P-----DAEALVARLREALADDLDTPKALAALDAWAREALSR 60 (81)
T ss_pred ChHHHHHHHHHHHHHHHHHhcc------------c--c-----cHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhc
Confidence 3678899999999988776542 0 0 123567899999999999999999999999887 54
No 114
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.73 E-value=5.7e-05 Score=77.01 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=44.8
Q ss_pred EEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcC-Cccc-cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 100 YVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRN-FTDV-DDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 100 y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~-~dD~-g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
..||--|.| .+||||.-+ ...+.+++ ..|+++.++.+ .+-. |++.=+..++.-.+ .+-+.++...+.+++.+
T Consensus 2 iy~G~~PTg~~lHlGh~~~---l~~~~~lq-~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~-~~~i~~n~~~~~~~~~a 76 (273)
T cd00395 2 LYCGIDPTADSLHIGHLIG---LLTFRRFQ-HAGHRPIFLIGGQTGIIGDPSGKKSERTLND-PEEVRQNIRRIAAQYLA 76 (273)
T ss_pred eEEeEcCCCCCccHHHHHH---HHHHHHHH-HCCCCEEEEEecCceeeCCCCCccccccCCC-HHHHHHHHHHHHHHHHH
Confidence 357778889 799999554 44455544 47999887665 1111 22210111111123 34555667888889999
Q ss_pred cCCC
Q 008191 177 LHCL 180 (574)
Q Consensus 177 L~I~ 180 (574)
+|+.
T Consensus 77 ~g~d 80 (273)
T cd00395 77 VGIF 80 (273)
T ss_pred hcCc
Confidence 9984
No 115
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=97.71 E-value=0.00041 Score=60.30 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Q 008191 380 VQLESASERIFYIYQTLHDCEKALSLLDAA---ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTIND 456 (574)
Q Consensus 380 ~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~ 456 (574)
+.+....+...++++.+..+.......... ......+.+++..++++.+.+.++| ++++++.|++.+++++..+|+
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~ 80 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNAL-EALDPTTAVQELFKFTNELNW 80 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccH
Confidence 345555555555555554433222111000 0112346789999999999999999 899999999999999999999
Q ss_pred HHHhhhcc
Q 008191 457 LLHTRKGK 464 (574)
Q Consensus 457 ~~~~~~~~ 464 (574)
|++..+++
T Consensus 81 y~~~~~pw 88 (117)
T cd07375 81 YLDELKPA 88 (117)
T ss_pred HHHHhhHH
Confidence 99866654
No 116
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.71 E-value=0.00036 Score=73.98 Aligned_cols=75 Identities=28% Similarity=0.304 Sum_probs=46.9
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
++.....+|--|.|.+||||. +....++++++ .|++|++.. .|+|- ... + +.+++++ +++..++..++
T Consensus 64 ~~~~~iytG~~PSG~lHLGh~---~~~~~~~~lQ~-~g~~~~i~I-aD~ha--~~~---~-~~~~e~~-~~~~~~~~~~~ 131 (368)
T PRK12285 64 GKPFAVYTGFMPSGPMHIGHK---MVFDELKWHQE-FGANVYIPI-ADDEA--YAA---R-GLSWEET-REWAYEYILDL 131 (368)
T ss_pred CCCeEEEEccCCCCCccHHHH---HHHHHHHHHHh-cCCCEEEEe-cchHH--Hhc---C-CCCHHHH-HHHHHHHHHHH
Confidence 334455667777799999995 34555555555 898876553 33332 111 1 4555554 45666688899
Q ss_pred HhcCCCC
Q 008191 175 VDLHCLP 181 (574)
Q Consensus 175 ~~L~I~~ 181 (574)
-++|+.+
T Consensus 132 lA~G~Dp 138 (368)
T PRK12285 132 IALGFDP 138 (368)
T ss_pred HHhCCCc
Confidence 9999963
No 117
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=97.71 E-value=0.00015 Score=64.22 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc-----hh-hhhHHHHHHHHHHHHHHHhhhcc
Q 008191 416 PPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK-----KQ-AMRLESLAALEKTIRNVLTVLGL 489 (574)
Q Consensus 416 ~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~-----~~-~~~~~~l~~~~~~l~~~l~iLGi 489 (574)
+..+...+..+...+..++ .+++++.++.++.+|+..+|+|++..+.. .. ..|+.++..+..++..++.+|||
T Consensus 35 e~~L~~~l~~~~~~l~~a~-~~~~p~~l~~yL~~La~~f~~fy~~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi 113 (119)
T PF05746_consen 35 ERELLKQLARFPDVLEKAA-KDLEPHKLCDYLYELAQAFNSFYDNVRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLGI 113 (119)
T ss_dssp HHHHHHHHCTHHHHHHHHH-HHT-CHHHHHHHHHHHHHHHHHHHHS-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4567788888999999999 99999999999999999999999987721 12 56889999999999999999999
Q ss_pred cc
Q 008191 490 MS 491 (574)
Q Consensus 490 ~p 491 (574)
.|
T Consensus 114 ~~ 115 (119)
T PF05746_consen 114 EP 115 (119)
T ss_dssp --
T ss_pred Cc
Confidence 76
No 118
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.69 E-value=0.0001 Score=75.14 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=47.3
Q ss_pred EEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCC-ccc-cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 100 YVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNF-TDV-DDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 100 y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~-dD~-g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
..||--|.| .+||||.-+ .-.+.|.++ .|++|+++.+= +-. |++.=+..++.+.+++++ .++...+.+++.+
T Consensus 3 iy~G~~PTg~~lHLG~~~~---~~~~~~lq~-~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i-~~~~~~~~~~~~a 77 (269)
T cd00805 3 VYIGFDPTAPSLHLGHLVP---LMKLRDFQQ-AGHEVIVLIGDATAMIGDPSGKSEERKLLDLELI-RENAKYYKKQLKA 77 (269)
T ss_pred EEEeeCCCCCcccHHHHHH---HHHHHHHHH-CCCeEEEEECCCeeecCCCCCccccccCCCHHHH-HHHHHHHHHHHHH
Confidence 357888898 899999554 345666666 49988766542 111 222212222334556555 5666778888999
Q ss_pred cCCC
Q 008191 177 LHCL 180 (574)
Q Consensus 177 L~I~ 180 (574)
+|..
T Consensus 78 ~g~~ 81 (269)
T cd00805 78 ILDF 81 (269)
T ss_pred HHcc
Confidence 9874
No 119
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.68 E-value=0.0032 Score=67.43 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=43.9
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...+|..|.|.+||||.-..+-- ..+.+...|++++|. +-|.-.-+ ...+|.++.+ +..++..++-+.|
T Consensus 4 rvlSGiqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~--IADlHAlT------~~~dp~~lr~-~~~e~aa~~LA~G 72 (431)
T PRK12284 4 RVLTGITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYF--LADYHALI------KCDDPARIQR-STLEIAATWLAAG 72 (431)
T ss_pred EEEEEecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEE--eechhhcc------CCCCHHHHHH-HHHHHHHHHHHhC
Confidence 36789999999999995444321 223333458987654 22322111 1245666554 4455788899999
Q ss_pred CC
Q 008191 179 CL 180 (574)
Q Consensus 179 I~ 180 (574)
+.
T Consensus 73 lD 74 (431)
T PRK12284 73 LD 74 (431)
T ss_pred CC
Confidence 96
No 120
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.66 E-value=0.0009 Score=72.13 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=46.1
Q ss_pred CCceeeeccccccCccchH--HHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhccChhhHHHHhhc
Q 008191 292 HSFDIHGGGMDLVFPHHEN--EIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG 368 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~--~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~ 368 (574)
...+|.+||.|+.. |.+. ++|.- .+.++. +-++.-.+ ..+|+|||||.||.|++.| +.-+|..++=++.+
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r--~~~~~~--~~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~ 259 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRR--YGGKPQ--FGLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMN 259 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHH--hCCCCe--EEEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhc
Confidence 46789999999984 5543 33332 223221 21332333 2489999999999999987 34567777777776
Q ss_pred c
Q 008191 369 T 369 (574)
Q Consensus 369 ~ 369 (574)
.
T Consensus 260 ~ 260 (408)
T PRK05912 260 I 260 (408)
T ss_pred C
Confidence 4
No 121
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.61 E-value=0.0004 Score=71.18 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=44.2
Q ss_pred EEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 008191 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC 179 (574)
Q Consensus 100 y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I 179 (574)
..+|--|.|.+||||.-+.+. ..+.|+..|+++.+..+ |.|. .+- ...+++ -.+++..++..++.++|+
T Consensus 2 i~tG~~PTG~lHLG~~~~al~---~~~~lQ~ag~~~~~~Ia-D~ha-~t~-----~~~~~~-~~~~~~~~~~~~~lA~G~ 70 (280)
T cd00806 2 VLSGIQPSGSLHLGHYLGAFR---FWVWLQEAGYELFFFIA-DLHA-LTV-----KQLDPE-ELRQNTRENAKDYLACGL 70 (280)
T ss_pred EEEeeCCCchhhHHHHHHHHH---HHHHHHhCCCCEEEEec-chHH-HhC-----CCCCHH-HHHHHHHHHHHHHHHcCC
Confidence 457888889999999766332 23334445998876632 2222 110 113444 455777888999999999
Q ss_pred CC
Q 008191 180 LP 181 (574)
Q Consensus 180 ~~ 181 (574)
.+
T Consensus 71 dp 72 (280)
T cd00806 71 DP 72 (280)
T ss_pred Cc
Confidence 63
No 122
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.53 E-value=0.00018 Score=75.39 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=43.3
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...+|-.|.|.+||||.-+ .-.++++++ .|++|++..+ |.|. .+-. ..++ +-..++...+..++.++|
T Consensus 32 ~v~~G~~PTG~lHLG~~~~---~~~~~~lq~-~g~~~~i~Ia-D~ha-~~~~-----~~~~-~~i~~~~~~~~~~~~A~G 99 (329)
T PRK08560 32 KAYIGFEPSGKIHLGHLLT---MNKLADLQK-AGFKVTVLLA-DWHA-YLND-----KGDL-EEIRKVAEYNKKVFEALG 99 (329)
T ss_pred EEEEccCCCCcchhhhhHH---HHHHHHHHH-CCCeEEEEEc-cchh-hcCC-----CCCH-HHHHHHHHHHHHHHHHcC
Confidence 3458888999999999543 333555554 5988765532 2221 1110 0234 344566678888999999
Q ss_pred CC
Q 008191 179 CL 180 (574)
Q Consensus 179 I~ 180 (574)
+.
T Consensus 100 ~d 101 (329)
T PRK08560 100 LD 101 (329)
T ss_pred CC
Confidence 96
No 123
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.48 E-value=0.0086 Score=62.77 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=43.0
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
+.++|--|.|.+||||.-..+-- ..+.+...|.++++. +.|.-. +.. ..+++++ +++..+...++-++|
T Consensus 5 ~v~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~--IADlHa--lt~----~~~~~~l-~~~~~~~~~~~lA~G 73 (332)
T PRK12556 5 IMLTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF--IADYHA--LNA----VHDPEQF-RSYTREVAATWLSLG 73 (332)
T ss_pred EEEEEECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE--Eechhh--ccC----CCCHHHH-HHHHHHHHHHHhhee
Confidence 56788889999999995443321 223344456555544 223222 111 1356554 466667888899999
Q ss_pred CCC
Q 008191 179 CLP 181 (574)
Q Consensus 179 I~~ 181 (574)
+.+
T Consensus 74 lDP 76 (332)
T PRK12556 74 LDP 76 (332)
T ss_pred ecc
Confidence 963
No 124
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.42 E-value=0.0071 Score=63.48 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=44.3
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
+..+|--|.|.+||||.-+++ .-.+.+...|. | ++.-.|.|- +.. ...++.++. ++..+...++-++|
T Consensus 4 ~v~sG~~PTG~~HLGn~l~~~---~~~~~lQ~~~~-~-~i~IaD~ha--~~~----~~~~~~~i~-~~~~~~~~~~lA~G 71 (333)
T PRK12282 4 IILTGDRPTGKLHLGHYVGSL---KNRVALQNEHE-Q-FVLIADQQA--LTD----NAKNPEKIR-RNILEVALDYLAVG 71 (333)
T ss_pred EEEEeeCCCCcchHHHHHHHH---HHHHHHHhCCC-E-EEEEccchh--HhC----CCCCHHHHH-HHHHHHHHHHHHhC
Confidence 566787788999999965533 23335555664 5 444456552 222 134555544 56677888899999
Q ss_pred CCC
Q 008191 179 CLP 181 (574)
Q Consensus 179 I~~ 181 (574)
+.+
T Consensus 72 ~dp 74 (333)
T PRK12282 72 IDP 74 (333)
T ss_pred cCh
Confidence 963
No 125
>PLN02486 aminoacyl-tRNA ligase
Probab=97.41 E-value=0.0019 Score=68.79 Aligned_cols=76 Identities=16% Similarity=0.085 Sum_probs=49.3
Q ss_pred CceeEEEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.-...||--|.| .+|||| +|.+..++.+++..|.++... ++|- ...+. .+.+.+++ .++..+..++
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGH---lv~~~~~~~lQ~~~~~~~~I~--iaD~----e~~~~-~~~~~e~i-~~~~~en~~~ 139 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGH---LIPFMFTKYLQDAFKVPLVIQ--LTDD----EKFLW-KNLSVEES-QRLARENAKD 139 (383)
T ss_pred CCCeEEEeCCCCCCccccHHH---HHHHHHHHHHHHhCCCeEEEE--ecCH----HHHhh-cCCCHHHH-HHHHHHHHHH
Confidence 44455678888998 599999 566666665555567666655 3332 22222 24565554 5677778888
Q ss_pred HHhcCCCC
Q 008191 174 MVDLHCLP 181 (574)
Q Consensus 174 l~~L~I~~ 181 (574)
+.++|+.+
T Consensus 140 iiA~G~dp 147 (383)
T PLN02486 140 IIACGFDV 147 (383)
T ss_pred HHHhCCCC
Confidence 99999863
No 126
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.32 E-value=0.0015 Score=69.66 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=51.2
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
++.-...+|--|.|.+|||| .++..--+.. |...|++|++..+ |.-..+- ...|.++.++ +.....+.+++
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~-lq~~G~~v~~~Ia--D~hA~~~---~~~g~~l~~i-~~~~~~~~~~~ 134 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQ--GILKAINVNK-LTKAGCVFVFWVA--DWFALLN---NKMGGDLEKI-RKVGEYFIEVW 134 (383)
T ss_pred CCCCEEEEEECCCCcccccc--hHhHhHHHHH-HHhCCCeEEEEEc--cceeecC---CCCCCCHHHH-HHHHHHHHHHH
Confidence 34445667888999999999 2222222333 4567999887643 2211110 1133445554 55667788889
Q ss_pred HhcCCCCC-CCcccccccHH
Q 008191 175 VDLHCLPP-SVEPRVSDHMP 193 (574)
Q Consensus 175 ~~L~I~~~-d~~~r~s~~~~ 193 (574)
.++|+.+. ..+...|++++
T Consensus 135 ~A~GlDp~k~~i~~qS~~v~ 154 (383)
T PTZ00126 135 KAAGMDMDNVRFLWASEEIN 154 (383)
T ss_pred HHhCCCccceEEEECChhhh
Confidence 99999631 22334455444
No 127
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.29 E-value=0.004 Score=66.19 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=44.0
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHH-cCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRH-LGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~-~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
...+|--|.|.+||||.-..+ +.|.++ .|+++++. +.|.-.-+. ...++.++ +.+..++..++-++
T Consensus 4 ~v~sGiqPSG~~HLGnylG~i-----k~wv~lq~~~~~~~~--IADlHAlt~-----~~~d~~~i-r~~~~~~~a~~lA~ 70 (398)
T PRK12283 4 RVLSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYECFFF--VADWHALTT-----HYETPEVI-EKNVWDMVIDWLAA 70 (398)
T ss_pred EEEEEeCCCCcchHHHHHHHH-----HHHHHHhcCCcEEEE--eecHHHHhC-----CCCCHHHH-HHHHHHHHHHHHHc
Confidence 467888999999999966543 355553 57776433 333322211 11255544 45667789999999
Q ss_pred CCCC
Q 008191 178 HCLP 181 (574)
Q Consensus 178 ~I~~ 181 (574)
|+.+
T Consensus 71 GlDP 74 (398)
T PRK12283 71 GVDP 74 (398)
T ss_pred CCCc
Confidence 9963
No 128
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0035 Score=64.55 Aligned_cols=194 Identities=19% Similarity=0.118 Sum_probs=100.8
Q ss_pred eEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcC-CeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 98 GMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLG-YEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 98 ~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G-~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
....+|-.|.|.+||||.-.++ -.+++...+ +++++. -.|+|-- -..+.++++-.+.+..+...++-+
T Consensus 6 ~~vlSG~~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~~-IaDlha~------t~~~~~~~~~l~~~~~e~~a~~LA 74 (314)
T COG0180 6 FRVLSGIQPSGKLHLGNYLGAI----RNWVLLQEEYYECFFF-IADLHAI------TVRQDPTEEDLRQATREVAADYLA 74 (314)
T ss_pred ceEEecCCCCCCcchhHhHHHH----HHHHHHhcccCceEEE-EecHHHh------hcCCCChHHHHHHHHHHHHHHHHH
Confidence 4567899999999999965543 233444445 466543 3333321 012344446677888888899999
Q ss_pred cCCCCCCC-cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh
Q 008191 177 LHCLPPSV-EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255 (574)
Q Consensus 177 L~I~~~d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~ 255 (574)
+|+. |+. ....-.+++++.++.-.| +|....|.|... ..+|...
T Consensus 75 ~GiD-P~k~~if~QS~v~e~~eLa~~l-----------------~~~~~~gel~r~-------------~~fKdk~---- 119 (314)
T COG0180 75 VGLD-PEKSTIFLQSEVPEHAELAWLL-----------------SCVTNFGELERM-------------TQFKDKS---- 119 (314)
T ss_pred hccC-ccccEEEEccCchHHHHHHHHH-----------------HccCcHHHHHhh-------------cCcchhh----
Confidence 9996 443 111112333322222222 111222322210 0001000
Q ss_pred hcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHH--HHHHhhcc----CCCCceEEEE
Q 008191 256 LWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENE--IAQSCAAC----NNSHISYWIH 329 (574)
Q Consensus 256 lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~--~A~~~a~~----~~~~~~~~~h 329 (574)
.+.++ ..+- |-....+-|+...|=+..++...|.|+. ||-+.. +|+-.... ...|.-+ +
T Consensus 120 ----~~~~~---~~~~-----Gl~~YPvlqAADILl~~a~~VPVG~DQ~-qHleLtRDiA~rfn~~y~~~f~~P~~~-~- 184 (314)
T COG0180 120 ----AKKGE---SIPI-----GLLTYPVLQAADILLYQATLVPVGEDQD-QHLELTRDIARRFNHLYGEVFPLPEAL-I- 184 (314)
T ss_pred ----hcccc---cccc-----cchhccHHHHHHhhhccCCeeccCCCch-HHHHHHHHHHHHHHhhcCCccCCcccc-c-
Confidence 00000 0111 2222335677777766678889999987 787654 34443321 2333322 3
Q ss_pred ee--EEE-eCC-cccccccCc-eeehhh
Q 008191 330 NG--FVT-IDS-EKMSKSLGN-FFTIRQ 352 (574)
Q Consensus 330 ~g--~v~-~~G-~KMSKS~Gn-~i~~~d 352 (574)
+. ++. ++| +|||||.+| +|.+.|
T Consensus 185 ~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 185 SKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred cCCCcccCCCCCCcccccCCCCeeeccC
Confidence 45 554 677 899999999 776544
No 129
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0015 Score=72.56 Aligned_cols=61 Identities=26% Similarity=0.303 Sum_probs=53.7
Q ss_pred CCceeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH
Q 008191 94 EGKVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE 154 (574)
Q Consensus 94 ~~~v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~ 154 (574)
.++.+++++=|-|| |.+|+||+.+.--.|+..=|.|++|++|.|..|+-.-|-+|-..|.+
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdK 103 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADK 103 (1080)
T ss_pred cccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHH
Confidence 34678899999998 99999999999999999999999999999999999988777665543
No 130
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0016 Score=69.40 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=33.9
Q ss_pred ceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeeh
Q 008191 294 FDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTI 350 (574)
Q Consensus 294 ~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~ 350 (574)
.|+++||.|+.+-|..-.- ....++.+ ..+-+|+=.|+ .+|.|||||.||.++.
T Consensus 181 ~dlq~GG~DQ~~ni~~grd-l~rr~g~~--~~~~lt~PLL~~ldG~KmgKs~~~a~~~ 235 (401)
T COG0162 181 KDLQLGGSDQWGNILAGRD-LIRRLGQK--KVVGLTTPLLTGLDGKKMGKSEGGAVWL 235 (401)
T ss_pred cchhcCChHHHHHHHHHHH-HHHHhCCC--CeEEEEeccccCCCCCcccccCCCceEc
Confidence 4699999998876643211 12223342 23446655554 5899999999995543
No 131
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=97.02 E-value=0.00039 Score=71.68 Aligned_cols=68 Identities=22% Similarity=0.128 Sum_probs=38.1
Q ss_pred HHHhhhCCCceeeeccccccCccchHHHHHHhhccCC--CCceEEEEeeEEE-eCCc-ccccccCc-eeehhhh
Q 008191 285 MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN--SHISYWIHNGFVT-IDSE-KMSKSLGN-FFTIRQV 353 (574)
Q Consensus 285 m~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~--~~~~~~~h~g~v~-~~G~-KMSKS~Gn-~i~~~d~ 353 (574)
++...+-...++.++|.|+. +|.+.-.-.....+.+ .+..+-+++-++. ++|. |||||.+| .|++.|-
T Consensus 141 QaaD~~~l~~~~~~~G~DQ~-~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 141 QAADILLLKADLVPGGIDQR-GHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp HHHHHHHTTHSEEEEEGGGH-HHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccceeeeccccccccchHH-HHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 33344434567999999986 3433222222222222 1122335556665 4888 99999999 8887664
No 132
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.83 E-value=0.019 Score=60.39 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=41.9
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...+|--|.|.+||||.-..+. -+.++++ +++|.++.. |.-..+- ..++++ ...+...+..++-++|
T Consensus 3 ~v~~G~~PTG~lHLG~~~g~~~--~~~~lQ~--~~~~~~~Ia--D~ha~t~------~~~~~~-i~~~~~~~~~~~lA~G 69 (333)
T PRK00927 3 RVLSGIQPTGKLHLGNYLGAIK--NWVELQD--EYECFFCIA--DLHALTV------PQDPEE-LRENTRELAADYLACG 69 (333)
T ss_pred EEEEeeCCCccchHHhHHHHHH--HHHHHHh--cCCeEEEEe--cHHHHhC------CCCHHH-HHHHHHHHHHHHHeEc
Confidence 3567788889999999665442 2333433 377776653 2221111 124443 4466677888999999
Q ss_pred CC
Q 008191 179 CL 180 (574)
Q Consensus 179 I~ 180 (574)
+.
T Consensus 70 lD 71 (333)
T PRK00927 70 ID 71 (333)
T ss_pred cC
Confidence 96
No 133
>PLN02886 aminoacyl-tRNA ligase
Probab=96.72 E-value=0.069 Score=56.90 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=42.9
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
..++|--|.|.+||||.-..+ .-+..++ .|+++++. +.|.-.-+ ...+++++. ++..++..++-++|
T Consensus 48 ~v~sGiqPSG~lHLGnylGai--~~~v~lQ--~~~~~~~~--IADlHAlt------~~~~~~~lr-~~~~~~~a~~lA~G 114 (389)
T PLN02886 48 RVVSGVQPTGSIHLGNYLGAI--KNWVALQ--ETYDTFFC--VVDLHAIT------LPHDPRELG-KATRSTAAIYLACG 114 (389)
T ss_pred eEEEEECCCCccHHHHHHHHH--HHHHHHh--ccCCEEEE--EecHHHhh------CCCCHHHHH-HHHHHHHHHHHHcC
Confidence 466788899999999954443 2233333 38887533 33332222 123555554 55567888999999
Q ss_pred CCC
Q 008191 179 CLP 181 (574)
Q Consensus 179 I~~ 181 (574)
+.+
T Consensus 115 lDP 117 (389)
T PLN02886 115 IDP 117 (389)
T ss_pred cCc
Confidence 963
No 134
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.69 E-value=0.0047 Score=65.93 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=27.8
Q ss_pred eEEEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcC
Q 008191 98 GMYVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRN 140 (574)
Q Consensus 98 ~~y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~ 140 (574)
....||--|.| .+||||+-+ .-.+++++ ..|++|.++.|
T Consensus 31 ~~vy~G~dPTg~~lHlGh~v~---l~~l~~lq-~~G~~~~ilig 70 (377)
T TIGR00234 31 IKLYVGFDPTAPSLHLGHLVP---LLKLRDFQ-QAGHEVIVLLG 70 (377)
T ss_pred CEEEEeeCCCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEe
Confidence 35678888998 899999543 34455444 57999987753
No 135
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0047 Score=67.09 Aligned_cols=90 Identities=24% Similarity=0.334 Sum_probs=66.6
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
+|-|+|.+||||+-.+-+-==++++ +-| |.|+..-| ..|+.=.++|...+.++..-||-. |
T Consensus 254 PPEPNG~LHIGHaKAInvNFgyAk~--~~G--~cyLRfDD--------------TNPEkEee~yf~sI~e~V~WLG~~-P 314 (764)
T KOG1148|consen 254 PPEPNGILHIGHAKAINVNFGYAKA--HGG--VCYLRFDD--------------TNPEKEEEEYFESIKEMVAWLGFE-P 314 (764)
T ss_pred CCCCCceeeecchhheeechhhhhh--hCC--eEEEecCC--------------CCcchhhHHHHHHHHHHHHHhCCC-c
Confidence 6889999999998754321112222 122 44444432 345555678999999999999997 6
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeee
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRV 211 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~ 211 (574)
...+..|+|-+++-++-.+|+.+|.||.-
T Consensus 315 ~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 315 YKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred eeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 77888899999999999999999999964
No 136
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=96.54 E-value=0.009 Score=53.02 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=64.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc--h----hhhhHHHHHHHHHHHHHHHhhhc
Q 008191 415 IPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK--K----QAMRLESLAALEKTIRNVLTVLG 488 (574)
Q Consensus 415 ~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~--~----~~~~~~~l~~~~~~l~~~l~iLG 488 (574)
.+..++..+..+.+.+..++ .+.+++.++.++.++...+|+|++..+.. . ...|+.++..+..++..++++||
T Consensus 37 ~E~~L~~~i~~~~~~i~~~~-~~~~~~~l~~~l~~L~~~~~~fy~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llg 115 (122)
T smart00836 37 EELALLRLLARFPEVLEAAA-ETLEPHRLANYLYDLASAFHSFYNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLG 115 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34567778888888888888 88999999999999999999999876621 1 24688899999999999999999
Q ss_pred ccc
Q 008191 489 LMS 491 (574)
Q Consensus 489 i~p 491 (574)
|.|
T Consensus 116 i~~ 118 (122)
T smart00836 116 ISA 118 (122)
T ss_pred CCc
Confidence 986
No 137
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=96.45 E-value=0.012 Score=66.79 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=47.5
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...+|--|.|.+||||. ++.=+-.+.+...|++|++.. .|.-..+ -.+.|.+...+.. +...+.+++.++|
T Consensus 34 rv~sGi~PTG~lHLGng---~~~aik~~~~~q~g~~~~~lI--AD~HAlt---~~~~~~~l~~i~~-~~~~~~~~~lA~G 104 (682)
T PTZ00348 34 RCYDGFEPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFWV--ADWFALM---NDKVGGELEKIRI-VGRYLIEVWKAAG 104 (682)
T ss_pred EEEEeeCCCCcCeeccH---HHHHHHHHHHHhCCCeEEEEE--cchhhhc---CCCCCCCHHHHHH-HHHHHHHHHHHcC
Confidence 46788899999999992 222111222335799987653 2322211 1223444444432 2345777899999
Q ss_pred CCCC-CCcccccccHH
Q 008191 179 CLPP-SVEPRVSDHMP 193 (574)
Q Consensus 179 I~~~-d~~~r~s~~~~ 193 (574)
+.+. ..+.+.|+++.
T Consensus 105 lDpeK~~~~~qSd~i~ 120 (682)
T PTZ00348 105 MDMDKVLFLWSSEEIT 120 (682)
T ss_pred CCccceEEEECcHhhh
Confidence 9632 22444555443
No 138
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.61 E-value=0.13 Score=55.48 Aligned_cols=49 Identities=33% Similarity=0.390 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHh----hhh--c-HHHHHHHHHH-hHhCCcEEEeCCCCeEEEECCchh
Q 008191 516 VLQRIEDRTVAR----KNK--E-YEKSDAIRKD-LAAVGIALMDSPVGTTWRPALPLA 565 (574)
Q Consensus 516 i~~Li~~R~~AR----~~K--d-f~~AD~IRd~-L~~~GI~leDt~~Gt~W~~~~~~~ 565 (574)
++.|++.|...| +.+ + .++||.|||. |.++|+.|+|.+ |++|.+..-.+
T Consensus 470 v~~L~~fr~~vRe~a~~~~~~~iL~l~d~lR~~~l~~~g~~led~~-g~~lvk~v~~e 526 (586)
T KOG2007|consen 470 VQSLSEFREKVREVAREKKVPEILELCDTLRDSDLLELGVRLEDRK-GSTLVKAVDRE 526 (586)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHhHHHHHhhHHHhhhHHHhCC-chHHHHHhhhH
Confidence 456666555444 333 2 5899999987 999999999999 88887764444
No 139
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=88.70 E-value=0.47 Score=44.13 Aligned_cols=88 Identities=24% Similarity=0.367 Sum_probs=58.2
Q ss_pred HHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHH
Q 008191 124 LYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQIL 203 (574)
Q Consensus 124 l~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~ 203 (574)
|+|+||+.||++.|.. +.-|++|+.-|.++|.-. ++ +=...+.+. ++|+ ...+.+..++.+++.+++.++-
T Consensus 18 LARwLRllGydt~~~~--~~~d~~i~~i~~~e~rIl--lT-RDr~L~~r~--k~g~--~~i~i~~~s~~~Ql~e~~~~~~ 88 (165)
T COG1656 18 LARWLRLLGYDTVYSS--NESDDEIILIAKKEGRIL--LT-RDRELYKRA--KLGI--KAILIRSDSIEEQLAEFLARLG 88 (165)
T ss_pred HHHHHHHcCCceeeec--cCCcHHHHHHHhcCCeEE--Ee-ccHHHHHHh--hccC--ceEEEeCCCHHHHHHHHHHHhc
Confidence 7999999999999988 555678888888766321 00 001122332 5676 3567777788899999988886
Q ss_pred HCCceeeecCceeecCCCCCCccc
Q 008191 204 DNGFAYRVDGDVYFSVDKFPEYGQ 227 (574)
Q Consensus 204 ~kG~aY~~~~~v~f~~~~~~~yg~ 227 (574)
.++. ....-+.|+.|+.
T Consensus 89 l~~~-------~~~e~~RCp~CN~ 105 (165)
T COG1656 89 LKPR-------LFPEFSRCPECNG 105 (165)
T ss_pred cchh-------cccccccCcccCC
Confidence 5541 2222456787764
No 140
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=78.38 E-value=2.6 Score=38.86 Aligned_cols=32 Identities=47% Similarity=0.776 Sum_probs=27.0
Q ss_pred HHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCC
Q 008191 124 LYRYLRHLGYEVCYVRNFTDVDDKIIARANELGE 157 (574)
Q Consensus 124 l~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~ 157 (574)
++|+||..||||.+...+ -|..|+..|.++|.
T Consensus 12 Lar~LR~lG~Dt~~~~~~--~D~~il~~A~~e~R 43 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDI--DDDEILELAREEGR 43 (147)
T ss_pred HHHHHHHCCCcEEEeCCC--ChHHHHHHhhhCCe
Confidence 799999999999999866 45668888888874
No 141
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=72.07 E-value=6.6 Score=26.96 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHhHh
Q 008191 515 QVLQRIEDRTVARKNKEYEKSDAIRKDLAA 544 (574)
Q Consensus 515 ~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~ 544 (574)
.|..|-+.-..|-++-||+.|-.|||++..
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~ 32 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKA 32 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 455666677778888999999999999765
No 142
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=61.05 E-value=27 Score=37.55 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=58.5
Q ss_pred CCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc---------------HHHHHHHHHcCCC---hHHH
Q 008191 103 GVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---------------DKIIARANELGED---PISL 162 (574)
Q Consensus 103 gpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g---------------~kI~~~A~~~g~~---~~e~ 162 (574)
||+|. |.+|++|+..|- +-+=..+..++|.| .-|...|++.|.+ ..++
T Consensus 41 ~~~v~icGD~Hl~NFG~~~------------~~~~~~vFdiNDFDEa~~gp~~wDl~Rla~Si~laa~~~gl~~~~~~~~ 108 (385)
T PF10009_consen 41 GPPVWICGDAHLENFGAFA------------SPEGRVVFDINDFDEALPGPFEWDLKRLATSIVLAARENGLSDKDARKA 108 (385)
T ss_pred CCceEEeccchhhccCccc------------CCCCCEEecCCCCCcCCcCChHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 45555 899999998863 44445566777876 3367778888886 4667
Q ss_pred HHHHHHHHHHHHHhcCCCC--CCCcccccccHHHHHHHHHHHHHC
Q 008191 163 SRRYCEEFHQDMVDLHCLP--PSVEPRVSDHMPHIIDMITQILDN 205 (574)
Q Consensus 163 a~~~~~~f~~~l~~L~I~~--~d~~~r~s~~~~~i~~~i~~L~~k 205 (574)
++.+.+.+.+.|..+.=.. ..++....+....+.+++++..++
T Consensus 109 ~~~~~~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka~~r 153 (385)
T PF10009_consen 109 VRAFLEGYREALADYAGMDPLDVWYFTPDNASGPVRKALKKARKR 153 (385)
T ss_pred HHHHHHHHHHHHHHhcCCChhhceecCchhhHHHHHHHHHHHHHh
Confidence 7788888888777765432 122222224445666666666554
No 143
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.04 E-value=5.8e+02 Score=31.46 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008191 441 TVVLAALSDPLKTINDLLHTRK 462 (574)
Q Consensus 441 ~~al~~l~~l~~~~N~~~~~~~ 462 (574)
....+.+.+|+..++.|+.+..
T Consensus 1467 ~~s~~el~~Li~~v~~Flt~~~ 1488 (1758)
T KOG0994|consen 1467 EESNRELRNLIQQVRDFLTQPD 1488 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 3556788899999999997654
No 144
>PRK13671 hypothetical protein; Provisional
Probab=43.01 E-value=1.3e+02 Score=31.14 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=42.4
Q ss_pred CCCCcCcchhhHHHHHHHHHHHHHHHcCC-eeEEEcCCcccc--HH-------HHHHHHHcCCC-----hHHH----HHH
Q 008191 105 TPYDLSHIGHARVYVTFDVLYRYLRHLGY-EVCYVRNFTDVD--DK-------IIARANELGED-----PISL----SRR 165 (574)
Q Consensus 105 t~yg~~HiGHar~~v~~Dvl~R~lr~~G~-~V~~v~~~dD~g--~k-------I~~~A~~~g~~-----~~e~----a~~ 165 (574)
+-|+|+|.||++- +....+..|. .|.+++.-+-.. .+ =.+.|++.|.+ |--+ |+.
T Consensus 7 aeFNP~H~GHl~~------~~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sAe~ 80 (298)
T PRK13671 7 AEYNPFHNGHIYQ------INYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHI 80 (298)
T ss_pred eeeCCccHHHHHH------HHHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEEeccHHHHhhchHH
Confidence 3469999999874 3444555554 456655443332 11 12345566866 4444 456
Q ss_pred HHHHHHHHHHhcCCC
Q 008191 166 YCEEFHQDMVDLHCL 180 (574)
Q Consensus 166 ~~~~f~~~l~~L~I~ 180 (574)
|...=.+.|++|||.
T Consensus 81 FA~gaV~lL~~lgvd 95 (298)
T PRK13671 81 FAKGAIKKLNKEKID 95 (298)
T ss_pred HHHHHHHHHHHcCCC
Confidence 666677899999974
No 145
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=41.57 E-value=30 Score=30.54 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHHHHHHHcCCeeEEEcC
Q 008191 112 IGHARVYVTFDVLYRYLRHLGYEVCYVRN 140 (574)
Q Consensus 112 iGHar~~v~~Dvl~R~lr~~G~~V~~v~~ 140 (574)
-||..+++ .+++.|+.+|++|.+...
T Consensus 9 ~Ghv~P~l---ala~~L~~rGh~V~~~~~ 34 (139)
T PF03033_consen 9 RGHVYPFL---ALARALRRRGHEVRLATP 34 (139)
T ss_dssp HHHHHHHH---HHHHHHHHTT-EEEEEET
T ss_pred hhHHHHHH---HHHHHHhccCCeEEEeec
Confidence 59999988 699999999999996554
No 146
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=41.13 E-value=56 Score=29.99 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccH
Q 008191 113 GHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHM 192 (574)
Q Consensus 113 GHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~ 192 (574)
||-| -+.+++|.|+..|++|.+.-.. .+|.|+++. ...++-.-++|+. ..-.|.
T Consensus 24 gHd~---gakvia~~l~d~GfeVi~~g~~---------------~tp~e~v~a---A~~~dv~vIgvSs-----l~g~h~ 77 (143)
T COG2185 24 GHDR---GAKVIARALADAGFEVINLGLF---------------QTPEEAVRA---AVEEDVDVIGVSS-----LDGGHL 77 (143)
T ss_pred cccc---chHHHHHHHHhCCceEEecCCc---------------CCHHHHHHH---HHhcCCCEEEEEe-----ccchHH
Confidence 5654 3577899999999999875443 345555432 2455555566642 122588
Q ss_pred HHHHHHHHHHHHCCc
Q 008191 193 PHIIDMITQILDNGF 207 (574)
Q Consensus 193 ~~i~~~i~~L~~kG~ 207 (574)
..+..+++.|.++|.
T Consensus 78 ~l~~~lve~lre~G~ 92 (143)
T COG2185 78 TLVPGLVEALREAGV 92 (143)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888888875
No 147
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.54 E-value=70 Score=28.83 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc
Q 008191 118 YVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL 155 (574)
Q Consensus 118 ~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~ 155 (574)
-+-.++++++|+..||+|.+.-..... +.++..|.+.
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~~~s~-e~~v~aa~e~ 52 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPLFQTP-EEIARQAVEA 52 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCCCCH-HHHHHHHHHc
Confidence 356789999999999999976543222 2344444443
No 148
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=39.97 E-value=80 Score=28.64 Aligned_cols=65 Identities=8% Similarity=0.044 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHH
Q 008191 120 TFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI 199 (574)
Q Consensus 120 ~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i 199 (574)
-..++++.|+..||+|.+. |.+ .+++++++...++ +-+.++++. ..+.|...+.+++
T Consensus 17 Gk~iv~~~l~~~GfeVi~L-G~~--------------v~~e~~v~aa~~~---~adiVglS~-----l~~~~~~~~~~~~ 73 (134)
T TIGR01501 17 GNKILDHAFTNAGFNVVNL-GVL--------------SPQEEFIKAAIET---KADAILVSS-----LYGHGEIDCKGLR 73 (134)
T ss_pred hHHHHHHHHHHCCCEEEEC-CCC--------------CCHHHHHHHHHHc---CCCEEEEec-----ccccCHHHHHHHH
Confidence 3467899999999999864 222 4455555443222 344455531 2245777788888
Q ss_pred HHHHHCCc
Q 008191 200 TQILDNGF 207 (574)
Q Consensus 200 ~~L~~kG~ 207 (574)
+.|.++|.
T Consensus 74 ~~l~~~gl 81 (134)
T TIGR01501 74 QKCDEAGL 81 (134)
T ss_pred HHHHHCCC
Confidence 88888876
No 149
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=37.90 E-value=50 Score=27.82 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=25.5
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeE
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVC 136 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~ 136 (574)
+|++||- .|.+ -.+.-.++-.++.|+..||.|.
T Consensus 1 iYIaGPm-tG~~----~~N~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 1 IYIAGPM-TGLP----DYNRPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred CeEeCCc-CCCc----chHHHHHHHHHHHHHHCCCEEe
Confidence 5888984 3554 3456778889999999999887
No 150
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=37.89 E-value=94 Score=36.06 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc-----hhhhhHHHHHHHHHHHHH
Q 008191 416 PPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK-----KQAMRLESLAALEKTIRN 482 (574)
Q Consensus 416 ~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~-----~~~~~~~~l~~~~~~l~~ 482 (574)
+..|.+.+.++...+..++ ..-++..++..|.+|...++.|++..-.- -+.-|+.+|..+...+..
T Consensus 603 E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~l~~L~~~Id~FFD~VmVm~~d~~iR~NRL~LL~~i~~~f~~ 673 (682)
T PRK01233 603 EKALYAALEELKPKVEPAL-AAGDYQAALEALAALRPPVDAFFDNVMVMAEDEALRANRLALLASLRELFLR 673 (682)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHhhhhHHHHHhCCCeeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777 56699999999999999999999876521 123355555555544443
No 151
>PLN02413 choline-phosphate cytidylyltransferase
Probab=37.26 E-value=40 Score=34.55 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=26.9
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCC
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNF 141 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~ 141 (574)
.+..+.+|+.| +++-+|.||++-. .+. +..|-.+..+.|+
T Consensus 24 ~~r~~rVyvdG--~FDLfH~GHir~L------~qA-K~lg~~d~LIVGV 63 (294)
T PLN02413 24 SDRPVRVYADG--IYDLFHFGHARSL------EQA-KKLFPNTYLLVGC 63 (294)
T ss_pred CCCceEEEEeC--chhhCCHHHHHHH------HHH-HHhCCCCEEEEEe
Confidence 34567888887 6999999999864 222 3344345566666
No 152
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=37.20 E-value=12 Score=38.13 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=42.7
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHH-HHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChH----HHHHHHHHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYV-TFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPI----SLSRRYCEEF 170 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v-~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~----e~a~~~~~~f 170 (574)
...+|- |--|.|.+|||-.-+.+ ++|++ ..|.+|+.... |+--.. ..-+-|. --+..|...+
T Consensus 34 ~l~~Yw-GtaptGrpHiay~vpm~kiadfl-----kAGC~VtIl~A--D~hA~L-----dNmkap~e~~~~rv~yYe~~I 100 (360)
T KOG2144|consen 34 ALKCYW-GTAPTGRPHIAYFVPMMKIADFL-----KAGCEVTILFA--DLHAFL-----DNMKAPDELVIRRVGYYEKEI 100 (360)
T ss_pred Cceeee-cCCCCCCcceeeeeehhHHHHHH-----hcCCeEEEEeh--HHHHHH-----hcccchHHHHHHHHHHHHHHH
Confidence 445554 44588999999855433 45543 46888875432 221110 1112222 3466888899
Q ss_pred HHHHHhcCCC
Q 008191 171 HQDMVDLHCL 180 (574)
Q Consensus 171 ~~~l~~L~I~ 180 (574)
+..+..+|+.
T Consensus 101 k~~l~~~nv~ 110 (360)
T KOG2144|consen 101 KAALGSINVP 110 (360)
T ss_pred HHHHhhcCCc
Confidence 9999988884
No 153
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.22 E-value=41 Score=34.42 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=45.5
Q ss_pred CCCceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008191 93 VEGKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFH 171 (574)
Q Consensus 93 ~~~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~ 171 (574)
+.|+.-...+|--|. +.+||||+-+++. ..||... ++|-.|.-+||-. |.+-+- ++. +=|..|..+=.
T Consensus 81 eq~kpFyLYTGRGpSS~smHlGHliPFif----tKwlQe~-F~vpLVIqlTDDE-KflwK~----l~~-eda~~~arENa 149 (397)
T KOG2145|consen 81 EQGKPFYLYTGRGPSSESMHLGHLIPFIF----TKWLQDV-FDVPLVIQLTDDE-KFLWKD----LTL-EDAKKYARENA 149 (397)
T ss_pred HcCCceEEEeCCCCCccccccccchhHHH----HHHHHHH-hCCceEEEecccH-HHHHhh----CcH-HHHHHHHHhcc
Confidence 345555666666666 9999999999974 4566543 6788887777754 322221 221 22334444444
Q ss_pred HHHHhcCCC
Q 008191 172 QDMVDLHCL 180 (574)
Q Consensus 172 ~~l~~L~I~ 180 (574)
+|.-++|..
T Consensus 150 KDIia~GFD 158 (397)
T KOG2145|consen 150 KDIIAVGFD 158 (397)
T ss_pred cceEEeccC
Confidence 555566664
No 154
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=34.69 E-value=1e+02 Score=32.02 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=48.6
Q ss_pred CcCcchhhHHHHHHHHHHHHHHHcCCeeEEE------cCCccccHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHhc
Q 008191 108 DLSHIGHARVYVTFDVLYRYLRHLGYEVCYV------RNFTDVDDKIIARANE-LGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 108 g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v------~~~dD~g~kI~~~A~~-~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
|+--+--+.--..+|.|+|-|+..|.+|..+ +++.+ -+++.+++++ .+..++|..+.|-+.|.+++...
T Consensus 176 g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~-~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~~~~ 251 (322)
T KOG1610|consen 176 GPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN-PEKLEKRMKEIWERLPQETKDEYGEDYFEDYKKS 251 (322)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4444444556678999999999999999643 45555 4666666655 46777888888888777766653
No 155
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.65 E-value=99 Score=31.71 Aligned_cols=131 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred cccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhhhhcC
Q 008191 338 EKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTL-----HDCEKALSLLDAAALK 412 (574)
Q Consensus 338 ~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l-----~~~~~~l~~~~~~~~~ 412 (574)
+|||||.+|--.--.+.+.=+.-.=.+==+.+...+.+.|+... .-..+++-+++..+ ..+.............
T Consensus 210 kKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~TD~~~~vtYd~~~-RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK 288 (347)
T KOG2713|consen 210 KKMSKSDPNPKSRINLTDSPDLIVKKIKKAQTDNTSGVTYDPAN-RPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFK 288 (347)
T ss_pred hhcccCCCCCcceEEecCCHHHHHHHHHHHhcccccceeeCCcc-ccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHH
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhccc
Q 008191 413 DSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLM 490 (574)
Q Consensus 413 ~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~ 490 (574)
......+++.+.-+..+|.+.+.+-=...+++..=.+=+++. ....+.++=.++|+.
T Consensus 289 ~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~GaekAre~---------------------A~~~l~~ik~~~Gf~ 345 (347)
T KOG2713|consen 289 DNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEGAEKAREL---------------------AAKNLEEIKQLMGFL 345 (347)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHhHHHHHHH---------------------HHHHHHHHHHHhccc
No 156
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=34.32 E-value=1.2e+02 Score=35.18 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc-----hhhhhHHHHHHHHHHHHHH
Q 008191 416 PPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK-----KQAMRLESLAALEKTIRNV 483 (574)
Q Consensus 416 ~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~ 483 (574)
+..|.+.+.++...+...+ ..-++..++..|.+|...++.|++..-.- -+.-|+.+|..+...+..+
T Consensus 613 E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~l~~L~~~Id~FFD~VmVm~~d~~iR~NRL~LL~~i~~lf~~i 684 (691)
T TIGR00211 613 EKALFEAVLAIKMNAQESF-ESGDYETALEALAELRAPVDEFFDSVMVMADDIELRQNRLNFLWGLRQLFLEV 684 (691)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHhhhHHHHHhCCCEeeCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666667666 45589999999999999999999876521 1233555555555544443
No 157
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.63 E-value=1.3e+02 Score=27.00 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHH
Q 008191 119 VTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDM 198 (574)
Q Consensus 119 v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~ 198 (574)
+-.+++++.|+..||+|.+. |.+ .+++++++...++ +-+.++++. -.+.|.+.+.++
T Consensus 14 iGkniv~~~L~~~GfeVidL-G~~--------------v~~e~~v~aa~~~---~adiVglS~-----L~t~~~~~~~~~ 70 (128)
T cd02072 14 VGNKILDHAFTEAGFNVVNL-GVL--------------SPQEEFIDAAIET---DADAILVSS-----LYGHGEIDCKGL 70 (128)
T ss_pred HHHHHHHHHHHHCCCEEEEC-CCC--------------CCHHHHHHHHHHc---CCCEEEEec-----cccCCHHHHHHH
Confidence 34578899999999999853 222 4455555443222 334444431 123467777777
Q ss_pred HHHHHHCCc
Q 008191 199 ITQILDNGF 207 (574)
Q Consensus 199 i~~L~~kG~ 207 (574)
++.|.++|+
T Consensus 71 ~~~l~~~gl 79 (128)
T cd02072 71 REKCDEAGL 79 (128)
T ss_pred HHHHHHCCC
Confidence 777777776
No 158
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=31.97 E-value=26 Score=35.90 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=35.9
Q ss_pred eeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcc
Q 008191 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTD 143 (574)
Q Consensus 76 l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD 143 (574)
.++.+.+.+... | .+.-|++|.-| +|+-.|.||||....+ ..+. -+|+.+.|+..
T Consensus 47 ~~it~~~a~~~~---p-~~RPVRVYADG--IyDLFH~GHarqL~Qa------K~~F-PNvyLiVGvc~ 101 (348)
T KOG2804|consen 47 KKITTEMARLGL---P-TDRPVRVYADG--IYDLFHYGHARQLEQA------KKLF-PNVYLIVGVCS 101 (348)
T ss_pred HHhhhhhhhcCC---C-CCCceEEEccc--hHHHhhhhHHHHHHHH------HHhC-CCeEEEEeecC
Confidence 344444444322 2 34569999998 6999999999986443 2333 34888888753
No 159
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=31.23 E-value=2.4e+02 Score=21.48 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccc-------ccHHHHHHHHHHHHHCCceeeecCceee
Q 008191 165 RYCEEFHQDMVDLHCLPPSVEPRVS-------DHMPHIIDMITQILDNGFAYRVDGDVYF 217 (574)
Q Consensus 165 ~~~~~f~~~l~~L~I~~~d~~~r~s-------~~~~~i~~~i~~L~~kG~aY~~~~~v~f 217 (574)
+-.+.+.+.+..=.+.+-+.+|... -....+.+.+..|.+.|+++...+.++|
T Consensus 4 ~i~~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~~G~~ 63 (64)
T PF00392_consen 4 QIYDQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIERRPGRGTF 63 (64)
T ss_dssp HHHHHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECCceEE
Confidence 3344555555555554445554443 1356788999999999999998887775
No 160
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=28.90 E-value=29 Score=29.56 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=11.5
Q ss_pred cCCCCCCcCcchhhHH
Q 008191 102 CGVTPYDLSHIGHARV 117 (574)
Q Consensus 102 cgpt~yg~~HiGHar~ 117 (574)
.|.++ |++|+||..-
T Consensus 4 ~~G~F-dp~H~GH~~l 18 (105)
T cd02156 4 FPGEP-GYLHIGHAKL 18 (105)
T ss_pred eCCCC-CCCCHHHHHH
Confidence 35666 9999999763
No 161
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=28.74 E-value=2.9e+02 Score=31.93 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc-----hhhhhHHHHHHHHHHHH
Q 008191 416 PPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK-----KQAMRLESLAALEKTIR 481 (574)
Q Consensus 416 ~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~-----~~~~~~~~l~~~~~~l~ 481 (574)
+..+.+.+..+...+.+++ ..-+...|+..|.+|..-+..|++..-.. -+.-|+++|..+...+.
T Consensus 612 E~~L~~a~~~~~~~~~~a~-a~~~y~~al~~L~~L~~pId~FFd~VmVm~eD~~iR~NRLalL~~l~~~f~ 681 (691)
T COG0751 612 EKALFEALQALKPKVAEAL-AEKDYQDALAALAELRPPIDEFFDNVMVMAEDEALRNNRLALLSKLRELFL 681 (691)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhHHHHhcCceeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888 77899999999999999999999875521 12234555544444433
No 162
>PHA02754 hypothetical protein; Provisional
Probab=28.25 E-value=88 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=20.9
Q ss_pred HHhhhhcHHH-HHHHHHHhHhCCcEEEe
Q 008191 525 VARKNKEYEK-SDAIRKDLAAVGIALMD 551 (574)
Q Consensus 525 ~AR~~Kdf~~-AD~IRd~L~~~GI~leD 551 (574)
+|..+|||.+ -.++||.|.+.||-|.-
T Consensus 9 k~i~eK~Fke~MRelkD~LSe~GiYi~R 36 (67)
T PHA02754 9 KAIMEKDFKEAMRELKDILSEAGIYIDR 36 (67)
T ss_pred HHHHHhHHHHHHHHHHHHHhhCceEEEE
Confidence 3556788965 47899999999998753
No 163
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=28.11 E-value=1.4e+02 Score=25.13 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=42.7
Q ss_pred EEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCccccc-ccHHHHHHHHHHHH
Q 008191 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVS-DHMPHIIDMITQIL 203 (574)
Q Consensus 136 ~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s-~~~~~i~~~i~~L~ 203 (574)
....|...+.++|+..|++.|++.++ -....+.|..|.+. +..|... +-+.+|..|+.++-
T Consensus 25 vvA~G~G~iAe~II~~Ake~~Vpi~e-----dp~Lv~~L~~lelg--~~IPeelY~vVAEifafi~~~~ 86 (92)
T COG2257 25 VVASGKGEIAEKIIEKAKEHGVPIQE-----DPLLVELLLKLELG--DEIPEELYEVVAEIFAFIYEVD 86 (92)
T ss_pred EEeecchHHHHHHHHHHHHcCCCccc-----CHHHHHHHHhcccc--ccCCHHHHHHHHHHHHHHHHHH
Confidence 45567778889999999999998755 24566778888884 4555443 45566666666653
No 164
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=27.09 E-value=97 Score=28.62 Aligned_cols=35 Identities=31% Similarity=0.351 Sum_probs=22.1
Q ss_pred eEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCC
Q 008191 98 GMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNF 141 (574)
Q Consensus 98 ~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~ 141 (574)
.+|+.| .++++|.||+. +|.|..++ |..+....+.
T Consensus 4 iv~~~G--~FD~~H~GHi~------~L~~A~~l-gd~liVgV~~ 38 (152)
T cd02173 4 VVYVDG--AFDLFHIGHIE------FLEKAREL-GDYLIVGVHD 38 (152)
T ss_pred EEEEcC--cccCCCHHHHH------HHHHHHHc-CCEEEEEEeC
Confidence 455554 68999999975 45566554 6555444443
No 165
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.57 E-value=72 Score=30.66 Aligned_cols=86 Identities=20% Similarity=0.101 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCccc-----cc
Q 008191 115 ARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPR-----VS 189 (574)
Q Consensus 115 ar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r-----~s 189 (574)
+++.|.-|+|...|+..||.|.+--+. .+.+.++.++.+ ...+..+.++..-..+-+--.| +|
T Consensus 85 a~p~Vp~~vl~daLk~~GyrVevr~~~-----------l~T~ap~~ev~E-~vreLse~~~E~~~~~lt~~vrklVv~~S 152 (204)
T COG3286 85 ASPNVPPDVLIDALKLLGYRVEVRGGE-----------LKTNAPWSEVVE-LVRELSEVYREARFQPLTRQVRKLVVAVS 152 (204)
T ss_pred hcCCCCHHHHHHHHHhCCceEEeeCce-----------eecCCCHHHHHH-HHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 345577899999999999999987776 123455544332 2222222222222211000000 01
Q ss_pred -ccHHHHHHHHHHHHHCCceeeec
Q 008191 190 -DHMPHIIDMITQILDNGFAYRVD 212 (574)
Q Consensus 190 -~~~~~i~~~i~~L~~kG~aY~~~ 212 (574)
.+--...+.++.+++.|++-+++
T Consensus 153 ~~~~~~~dd~~eeave~Gll~e~E 176 (204)
T COG3286 153 IVYGLDPDDAAEEAVELGLLEEGE 176 (204)
T ss_pred hHhCCCHHHHHHHHHHhhhhhccc
Confidence 12223457888999999987664
No 166
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.89 E-value=69 Score=26.36 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=30.1
Q ss_pred HHHHHHHcCCeeEEEcCCccc---c-------HH-H---HH---HH---HHcCCChHHHHHHHHHHH
Q 008191 124 LYRYLRHLGYEVCYVRNFTDV---D-------DK-I---IA---RA---NELGEDPISLSRRYCEEF 170 (574)
Q Consensus 124 l~R~lr~~G~~V~~v~~~dD~---g-------~k-I---~~---~A---~~~g~~~~e~a~~~~~~f 170 (574)
++.+|+.+||+|.-+.+-.|. | +. + .. ++ ...|+++.|+++...+.+
T Consensus 13 v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 13 VKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred HHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 678899999999877665522 1 10 1 10 10 235899999998776654
No 167
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.02 E-value=1.7e+02 Score=30.42 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCeeE--EEcCCccccHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHH
Q 008191 121 FDVLYRYLRHLGYEVC--YVRNFTDVDDKIIARANELG-EDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197 (574)
Q Consensus 121 ~Dvl~R~lr~~G~~V~--~v~~~dD~g~kI~~~A~~~g-~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~ 197 (574)
.-|-++.|+.+||+|+ |..|||+.|+. | .-|.| +=.+.-....+.|||. ......+-||-..+-+
T Consensus 18 SsVaa~Ll~~~g~~v~gv~M~nWd~~de~--------~s~cp~e---~D~~da~~Vc~~LnI~-~~~Vnf~kEYW~~Vfs 85 (377)
T KOG2805|consen 18 SSVAARLLAARGYNVTGVFMKNWDSLDEF--------GSQCPAE---RDWKDAKRVCKQLNIP-LHQVNFVKEYWNDVFS 85 (377)
T ss_pred HHHHHHHHHhcCCCeeEEeeecccccccc--------ccCCCch---hhHHHHHHHHHHhCCe-eEEEeeHHHHHHHHHH
Confidence 3456788899999996 66788766531 2 11111 1111122345566663 3334344455555555
Q ss_pred HHHHHHHCCc
Q 008191 198 MITQILDNGF 207 (574)
Q Consensus 198 ~i~~L~~kG~ 207 (574)
-+...+++|.
T Consensus 86 ~~L~~Y~~G~ 95 (377)
T KOG2805|consen 86 PFLEEYENGR 95 (377)
T ss_pred HHHHHHhcCC
Confidence 5555555555
No 168
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=22.14 E-value=1.4e+02 Score=27.61 Aligned_cols=19 Identities=53% Similarity=0.815 Sum_probs=15.5
Q ss_pred ceeEEEcCCCCCCcCcchhhH
Q 008191 96 KVGMYVCGVTPYDLSHIGHAR 116 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar 116 (574)
.+++|++| .++.+|.||++
T Consensus 2 ~~rV~~~G--~FDl~H~GHi~ 20 (150)
T cd02174 2 PVRVYVDG--CFDLFHYGHAN 20 (150)
T ss_pred CeEEEEeC--ccCCCCHHHHH
Confidence 45788887 58999999986
No 169
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=22.09 E-value=1e+02 Score=30.32 Aligned_cols=99 Identities=11% Similarity=0.159 Sum_probs=62.1
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
+..||-|.++.+=.-|+.++ +...++-.+..|.|+..-. .+ ++ .+.|.+.+++.++.+|
T Consensus 4 L~Ls~~~~~~~~~~~~~~~~-----i~n~l~g~~~~i~FIPtAs--------------~~-~~-~~~Yv~k~~~~l~~lg 62 (224)
T COG3340 4 LLLSSSTFSFEDVLEHFLPF-----IANFLQGKRKTIAFIPTAS--------------VD-SE-DDFYVEKVRNALAKLG 62 (224)
T ss_pred EEecCCCcccchhhhhhhHH-----HHHHhcCCCceEEEEecCc--------------cc-cc-hHHHHHHHHHHHHHcC
Confidence 34555555555555555554 3444444455787776421 11 11 1678999999999999
Q ss_pred CCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCC
Q 008191 179 CLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF 222 (574)
Q Consensus 179 I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~ 222 (574)
+. ++..++.+.+.+.| -.+|.+...+|...|..++=...+
T Consensus 63 ~~-v~~L~l~~~~~~~I---e~~l~~~d~IyVgGGNTF~LL~~l 102 (224)
T COG3340 63 LE-VSELHLSKPPLAAI---ENKLMKADIIYVGGGNTFNLLQEL 102 (224)
T ss_pred Ce-eeeeeccCCCHHHH---HHhhhhccEEEECCchHHHHHHHH
Confidence 96 66677777665543 356778888998887776544433
No 170
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.92 E-value=1.5e+02 Score=31.81 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=26.5
Q ss_pred EEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcC
Q 008191 99 MYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRN 140 (574)
Q Consensus 99 ~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~ 140 (574)
-..||--|. ..+|+||+-..+. |.++ ...|+++.-+.|
T Consensus 65 ~vYcGfDPTA~SLHvGNLl~lm~---L~hf-qr~Gh~~ialIG 103 (467)
T KOG2623|consen 65 YVYCGFDPTAESLHVGNLLALMV---LIHF-QRAGHRPIALIG 103 (467)
T ss_pred eEEecCCCcHHhhhhcchHHHHH---HHHH-HHcCCCceEEec
Confidence 355887777 8899999866542 3333 347999887766
No 171
>PRK09620 hypothetical protein; Provisional
Probab=21.65 E-value=1.3e+02 Score=29.77 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=37.1
Q ss_pred CceeEEEcCCCCC---CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCc
Q 008191 95 GKVGMYVCGVTPY---DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFT 142 (574)
Q Consensus 95 ~~v~~y~cgpt~y---g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~d 142 (574)
|+.-+.+.|||.= ..=.|+|..+--++--+++.|..+|++|.++.|..
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4445667788754 33478888877888889999999999999998764
No 172
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=21.19 E-value=3.2e+02 Score=33.15 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhh-----cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008191 390 FYIYQTLHDCEKALSLLDAAA-----LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK 464 (574)
Q Consensus 390 ~~l~~~l~~~~~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~ 464 (574)
..+..+++|+..++.+..... ...+.+..|.+.+.++...+... .-+...++..|.+|...++.|+++.-.-
T Consensus 894 ~~l~~a~kRv~NIl~k~~~~~vd~~Lf~~~~E~~L~~a~~~~~~~~~~~---~~dy~~al~~La~L~~~Id~FFD~VmVm 970 (1000)
T PRK14908 894 AEIAAALNRLKRILASLSFSVTDASLLLEPAELNLKQALDAFREELTEL---PIDLKDYVAAAAELPQAVNTFFDEVLVM 970 (1000)
T ss_pred HHHHHHHHHHHHHHhhcCCCccChhhcCCHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHhhhhHHHHHhCCCEee
Confidence 355556666655554432100 01122334444444444444433 2388899999999999999999876521
Q ss_pred -----hhhhhHHHHHHHHHHHHH
Q 008191 465 -----KQAMRLESLAALEKTIRN 482 (574)
Q Consensus 465 -----~~~~~~~~l~~~~~~l~~ 482 (574)
-+.-|+.+|..+...+..
T Consensus 971 ~eD~~iR~NRLaLL~~i~~lf~~ 993 (1000)
T PRK14908 971 ADDEAIRNARLGLLAAIRDLKFG 993 (1000)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 123355555555444443
No 173
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=20.36 E-value=1.2e+02 Score=30.75 Aligned_cols=62 Identities=21% Similarity=0.164 Sum_probs=35.0
Q ss_pred cchhh-HHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHH-----HHHHHHHHHHHhcC
Q 008191 111 HIGHA-RVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSR-----RYCEEFHQDMVDLH 178 (574)
Q Consensus 111 HiGHa-r~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~-----~~~~~f~~~l~~L~ 178 (574)
=+||+ |+..++ +.|+.+|++|.|++.-+.-. ++...++.|.+...+.+ +-.+++.+.++..+
T Consensus 13 G~GHv~Rcl~LA----~~l~~~g~~v~f~~~~~~~~--~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~ 80 (279)
T TIGR03590 13 GLGHVMRCLTLA----RALHAQGAEVAFACKPLPGD--LIDLLLSAGFPVYELPDESSRYDDALELINLLEEEK 80 (279)
T ss_pred cccHHHHHHHHH----HHHHHCCCEEEEEeCCCCHH--HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcC
Confidence 37894 777655 45567899999998765332 33444556654322211 12234666666553
No 174
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.27 E-value=1.8e+02 Score=29.07 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=61.4
Q ss_pred HHHHHHcCCeeEEEcCCccccHHH-HHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHH
Q 008191 125 YRYLRHLGYEVCYVRNFTDVDDKI-IARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQIL 203 (574)
Q Consensus 125 ~R~lr~~G~~V~~v~~~dD~g~kI-~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~ 203 (574)
..-.+..|++|..-+=..-.+-+. ..-....+.+.++..++....+.+.=...|+. ...=.|-|...+.|..+.+.|.
T Consensus 70 ~~~A~~~G~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~v~~~~Gln-NhmGs~~tsn~~aM~~~m~~Lk 148 (250)
T COG2861 70 AQKARNAGHEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNKVPDAVGLN-NHMGSRFTSNEDAMEKLMEALK 148 (250)
T ss_pred HHHHHhcCCEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhhCccceeeh-hhhhhhhcCcHHHHHHHHHHHH
Confidence 455677899998777665554222 12233345666777777777777666666764 3334566788899999999999
Q ss_pred HCCceeeecCce
Q 008191 204 DNGFAYRVDGDV 215 (574)
Q Consensus 204 ~kG~aY~~~~~v 215 (574)
++|+.|..++..
T Consensus 149 ~r~l~flDs~T~ 160 (250)
T COG2861 149 ERGLYFLDSGTI 160 (250)
T ss_pred HCCeEEEccccc
Confidence 999988776543
No 175
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=20.09 E-value=1e+03 Score=25.09 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHhCCcEEEeCCCC
Q 008191 532 YEKSDAIRKDLAAVGIALMDSPVG 555 (574)
Q Consensus 532 f~~AD~IRd~L~~~GI~leDt~~G 555 (574)
-...|+||+-+..+|+.+.+++.=
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeI 134 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEI 134 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCcc
Confidence 357899999999999999998864
No 176
>PLN02199 shikimate kinase
Probab=20.04 E-value=2.2e+02 Score=29.59 Aligned_cols=126 Identities=23% Similarity=0.342 Sum_probs=62.9
Q ss_pred CccccccCCcC---Ccc---cccCCCCCCCCCCccccccccCCCCCcccc--ccCCCCCCCCCCCCCCcceeeeeccCCC
Q 008191 14 LASIKFSPFIN---SFH---TLQLRPPKPNNRRVFRCFSTLNSSPNVIDD--KSNGKTDGDDKPASASTQLWLYNTMSRK 85 (574)
Q Consensus 14 ~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~ntl~~~ 85 (574)
-.++.||...+ ++| .-++.|..++++++-.+...+|+. +.+++ +++. - -|+... . |.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~le~~~----~-~~~de~----~---Lk~~ 92 (303)
T PLN02199 26 RGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSD-NNSSALLETGS----V-YPFDED----I---LKRK 92 (303)
T ss_pred CcceehhhccccccceeEEEeccccccccchhhhccccccccCC-CCchhhcccCC----C-CCCCHH----H---HHHH
Confidence 45777877766 444 334566656555554444445543 22222 1222 0 122221 1 2222
Q ss_pred ccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHH-HcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHH
Q 008191 86 RELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLR-HLGYEVCYVRNFTDVDDKIIARANELGEDPISLSR 164 (574)
Q Consensus 86 ~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr-~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~ 164 (574)
-+.+.+..+ ...|++.|+.-.|...+|.. |. ..|+.+. |.|.-|.... .|.+..++-+
T Consensus 93 a~~i~~~l~-~~~I~LIG~~GSGKSTVgr~------------LA~~Lg~~fI------DtD~lIe~~~--~G~sI~eIf~ 151 (303)
T PLN02199 93 AEEVKPYLN-GRSMYLVGMMGSGKTTVGKL------------MSKVLGYTFF------DCDTLIEQAM--NGTSVAEIFV 151 (303)
T ss_pred HHHHHHHcC-CCEEEEECCCCCCHHHHHHH------------HHHHhCCCEE------ehHHHHHHHh--cCCCHHHHHH
Confidence 233333222 34788899886676655542 32 2577765 4444444432 3788888777
Q ss_pred HHHHHHHHH
Q 008191 165 RYCEEFHQD 173 (574)
Q Consensus 165 ~~~~~f~~~ 173 (574)
.+-+..+..
T Consensus 152 ~~GE~~FR~ 160 (303)
T PLN02199 152 HHGENFFRG 160 (303)
T ss_pred HhCHHHHHH
Confidence 666554443
Done!