Query 008191
Match_columns 574
No_of_seqs 374 out of 2505
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:19:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 1E-117 4E-122 953.8 38.8 458 74-560 3-461 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 1E-114 5E-119 933.3 35.2 463 72-561 20-501 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 100.0 1E-107 5E-112 883.8 36.9 458 76-560 2-460 (461)
4 3c8z_A Cysteinyl-tRNA syntheta 100.0 2.3E-85 7.7E-90 703.0 32.2 388 71-490 16-413 (414)
5 2csx_A Methionyl-tRNA syntheta 100.0 2.7E-64 9.2E-69 553.4 25.7 400 96-501 4-466 (497)
6 2d5b_A Methionyl-tRNA syntheta 100.0 2.2E-62 7.6E-67 538.7 30.0 394 98-501 4-467 (500)
7 3u1f_A Methionyl-tRNA syntheta 100.0 6.9E-62 2.4E-66 539.8 24.6 398 98-502 10-498 (542)
8 1rqg_A Methionyl-tRNA syntheta 100.0 5.8E-61 2E-65 545.6 31.6 403 97-502 4-520 (722)
9 2x1l_A Methionyl-tRNA syntheta 100.0 1E-60 3.5E-65 528.2 25.3 395 97-502 14-490 (524)
10 4dlp_A Aminoacyl-tRNA syntheta 100.0 6.8E-60 2.3E-64 522.5 29.0 410 87-502 15-497 (536)
11 3kfl_A Methionyl-tRNA syntheta 100.0 4.6E-60 1.6E-64 525.9 23.4 413 86-502 14-514 (564)
12 3h99_A Methionyl-tRNA syntheta 100.0 3.4E-59 1.2E-63 519.5 29.9 408 90-502 11-520 (560)
13 1iq0_A Arginyl-tRNA synthetase 100.0 1.6E-51 5.5E-56 458.8 16.8 378 96-492 104-589 (592)
14 1gax_A Valrs, valyl-tRNA synth 100.0 5.7E-49 1.9E-53 452.6 31.8 403 96-502 35-695 (862)
15 2zue_A Arginyl-tRNA synthetase 100.0 1.8E-49 6E-54 443.9 17.5 379 93-492 117-626 (629)
16 1ile_A Ilers, isoleucyl-tRNA s 100.0 4E-48 1.4E-52 447.1 19.3 406 96-503 39-771 (821)
17 1wkb_A Leucyl-tRNA synthetase; 100.0 1.2E-46 4.3E-51 434.9 29.6 204 292-501 602-809 (810)
18 1ffy_A Isoleucyl-tRNA syntheta 100.0 1.6E-46 5.5E-51 435.7 29.2 405 96-502 49-772 (917)
19 1wz2_A Leucyl-tRNA synthetase; 100.0 6.6E-46 2.3E-50 434.2 28.1 205 292-502 602-810 (967)
20 4arc_A Leucine--tRNA ligase; l 100.0 4.4E-45 1.5E-49 419.1 28.2 408 85-502 40-797 (880)
21 1irx_A Lysyl-tRNA synthetase; 100.0 1.8E-47 6.3E-52 421.1 7.1 271 99-396 21-337 (523)
22 2v0c_A Aminoacyl-tRNA syntheta 100.0 7.3E-44 2.5E-48 411.8 33.3 427 95-533 31-834 (878)
23 1f7u_A Arginyl-tRNA synthetase 100.0 5.3E-45 1.8E-49 405.0 18.8 356 93-492 141-604 (607)
24 3fnr_A Arginyl-tRNA synthetase 100.0 7.5E-38 2.6E-42 337.1 23.3 356 93-492 28-451 (464)
25 3aii_A Glutamyl-tRNA synthetas 100.0 5E-33 1.7E-37 301.0 6.6 251 102-388 101-395 (553)
26 1qtq_A GLNRS, protein (glutami 100.0 1.3E-31 4.5E-36 289.9 11.0 251 102-387 31-332 (553)
27 2hz7_A Glutaminyl-tRNA synthet 100.0 5.1E-31 1.7E-35 296.5 10.8 259 94-387 61-372 (851)
28 2cfo_A Glutamyl-tRNA synthetas 99.9 1.1E-26 3.9E-31 251.3 11.5 238 103-384 7-296 (492)
29 1nzj_A Hypothetical protein YA 99.9 2.3E-25 7.8E-30 226.9 9.3 209 103-353 11-241 (298)
30 2o5r_A Glutamyl-tRNA synthetas 99.8 1.6E-17 5.4E-22 179.7 18.9 231 95-369 11-292 (481)
31 3al0_C Glutamyl-tRNA(Gln) amid 99.7 1.5E-16 5.2E-21 175.6 16.7 234 95-371 128-391 (592)
32 1j09_A Glutamyl-tRNA synthetas 99.7 8E-16 2.7E-20 165.5 15.1 239 103-384 7-291 (468)
33 3afh_A Glutamyl-tRNA synthetas 99.6 1.5E-15 5E-20 164.1 16.5 233 103-382 31-300 (488)
34 4g6z_A Glutamate-tRNA ligase; 99.6 1.2E-14 4.1E-19 156.3 18.7 239 103-385 31-312 (490)
35 2ja2_A Glutamyl-tRNA synthetas 99.4 1.3E-11 4.4E-16 133.5 17.7 223 103-369 12-287 (498)
36 4gri_A Glutamate--tRNA ligase; 99.2 7.9E-11 2.7E-15 128.5 13.8 252 103-385 30-322 (512)
37 2cyb_A Tyrosyl-tRNA synthetase 98.5 2.8E-07 9.5E-12 94.9 10.6 74 288-369 165-239 (323)
38 2g36_A Tryptophanyl-tRNA synth 98.4 1.5E-06 5.1E-11 89.9 13.1 208 98-369 13-230 (340)
39 3tzl_A Tryptophanyl-tRNA synth 98.0 4.1E-06 1.4E-10 85.9 6.4 79 284-368 130-216 (322)
40 2el7_A Tryptophanyl-tRNA synth 98.0 0.0002 6.9E-09 73.8 18.4 86 286-379 134-232 (337)
41 2dlc_X Tyrosyl-tRNA synthetase 98.0 9.8E-06 3.4E-10 85.5 7.6 72 289-368 178-252 (394)
42 3hzr_A Tryptophanyl-tRNA synth 97.9 4.3E-05 1.5E-09 80.0 9.9 75 95-180 80-154 (386)
43 1n3l_A Tyrosyl-tRNA synthetase 97.8 4E-05 1.4E-09 80.2 9.5 72 289-368 174-247 (372)
44 2zp1_A Tyrosyl-tRNA synthetase 97.8 1.1E-05 3.8E-10 82.5 5.0 79 99-191 30-108 (314)
45 2cya_A Tyrosyl-tRNA synthetase 97.7 5.5E-05 1.9E-09 78.9 7.9 77 285-369 169-264 (364)
46 1y42_X Tyrosyl-tRNA synthetase 97.7 0.00016 5.6E-09 75.9 11.3 74 293-369 232-321 (392)
47 1yi8_B Tryptophanyl-tRNA synth 97.6 9.5E-05 3.2E-09 76.6 7.4 78 285-368 154-239 (351)
48 3i05_A Tryptophanyl-tRNA synth 97.5 0.00048 1.6E-08 72.3 12.1 75 95-180 76-151 (395)
49 3vgj_A Tyrosyl-tRNA synthetase 97.4 0.00048 1.6E-08 71.9 10.7 73 99-180 58-130 (373)
50 2j5b_A Tyrosyl-tRNA synthetase 97.4 0.00031 1.1E-08 72.7 8.2 58 293-353 186-247 (348)
51 3jxe_A Tryptophanyl-tRNA synth 97.4 0.0005 1.7E-08 72.0 9.8 73 96-180 73-146 (392)
52 3hv0_A Tryptophanyl-tRNA synth 97.4 0.00041 1.4E-08 72.8 9.0 75 95-180 72-148 (393)
53 1i6k_A TRPRS, tryptophanyl-tRN 97.3 0.0002 6.7E-09 73.6 5.1 69 99-180 3-71 (328)
54 3tze_A Tryptophanyl-tRNA synth 97.3 0.00036 1.2E-08 73.4 7.1 75 95-180 99-174 (406)
55 2ip1_A Tryptophanyl-tRNA synth 97.2 0.0011 3.8E-08 70.4 9.9 76 95-180 100-176 (432)
56 3p0j_A Tyrosyl-tRNA synthetase 97.2 0.0011 3.6E-08 74.5 10.0 74 98-180 41-114 (690)
57 2cyc_A Tyrosyl-tRNA synthetase 97.2 0.00087 3E-08 70.0 8.8 78 285-368 172-276 (375)
58 3prh_A Tryptophanyl-tRNA synth 97.1 0.008 2.8E-07 62.7 14.9 68 100-180 38-105 (388)
59 2yy5_A Tryptophanyl-tRNA synth 97.0 0.00068 2.3E-08 70.1 6.5 71 99-183 6-76 (348)
60 1r6t_A Tryptophanyl-tRNA synth 96.9 0.00088 3E-08 72.1 5.8 74 95-180 153-228 (477)
61 1r6u_A Tryptophanyl-tRNA synth 96.8 0.00097 3.3E-08 70.8 5.1 75 95-180 106-181 (437)
62 2yxn_A Tyrosyl-tRNA synthetase 96.7 0.0037 1.3E-07 63.9 8.2 72 293-369 191-263 (322)
63 2pid_A Tyrosyl-tRNA synthetase 96.4 0.0041 1.4E-07 64.5 6.5 72 293-369 210-282 (356)
64 1jil_A Tyrrs, tyrosyl-tRNA syn 95.6 0.013 4.3E-07 62.1 6.1 71 293-368 186-258 (420)
65 2jan_A Tyrosyl-tRNA synthetase 95.6 0.011 3.9E-07 62.5 5.6 72 293-369 187-260 (432)
66 1h3f_A Tyrosyl-tRNA synthetase 95.4 0.01 3.5E-07 63.0 4.6 69 293-369 187-257 (432)
67 2ts1_A Tyrosyl-tRNA synthetase 95.4 0.0064 2.2E-07 64.2 2.9 72 293-369 185-258 (419)
68 3n9i_A Tryptophanyl-tRNA synth 87.9 0.9 3.1E-05 46.5 7.2 68 100-181 18-86 (346)
69 3foc_A Tryptophanyl-tRNA synth 85.3 2.5 8.5E-05 44.7 9.0 76 95-180 89-165 (451)
70 3a04_A Tryptophanyl-tRNA synth 84.7 1.9 6.4E-05 44.6 7.7 77 94-181 67-143 (372)
71 3foc_A Tryptophanyl-tRNA synth 83.9 0.42 1.4E-05 50.6 2.4 54 296-352 290-347 (451)
72 3sz3_A Tryptophanyl-tRNA synth 82.3 0.46 1.6E-05 48.7 1.8 69 100-181 9-77 (341)
73 3a04_A Tryptophanyl-tRNA synth 80.7 1.1 3.6E-05 46.5 3.9 59 291-352 206-270 (372)
74 2yxn_A Tyrosyl-tRNA synthetase 70.5 2.7 9.4E-05 42.5 3.7 39 98-140 34-73 (322)
75 1h3f_A Tyrosyl-tRNA synthetase 69.7 6.5 0.00022 41.4 6.5 42 95-140 35-77 (432)
76 2ts1_A Tyrosyl-tRNA synthetase 69.4 3.2 0.00011 43.6 4.0 38 99-140 32-70 (419)
77 2pid_A Tyrosyl-tRNA synthetase 69.2 3.5 0.00012 42.3 4.2 39 98-140 47-86 (356)
78 1jil_A Tyrrs, tyrosyl-tRNA syn 67.8 3.3 0.00011 43.5 3.7 77 98-180 33-112 (420)
79 2jan_A Tyrosyl-tRNA synthetase 67.2 3.7 0.00013 43.2 4.0 39 98-140 33-72 (432)
80 3sz3_A Tryptophanyl-tRNA synth 59.1 8.7 0.0003 39.1 4.8 69 283-352 133-217 (341)
81 3n9i_A Tryptophanyl-tRNA synth 55.5 16 0.00054 37.2 6.0 69 283-352 142-223 (346)
82 3p0j_A Tyrosyl-tRNA synthetase 50.5 48 0.0016 37.0 9.4 79 103-190 388-467 (690)
83 1e52_A Excinuclease ABC subuni 36.8 26 0.0009 26.3 3.1 33 513-545 23-55 (63)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.1e-117 Score=953.81 Aligned_cols=458 Identities=42% Similarity=0.804 Sum_probs=359.9
Q ss_pred cceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHH
Q 008191 74 TQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARAN 153 (574)
Q Consensus 74 ~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~ 153 (574)
+.|+|||||||+||+|.|.++++|+||+|||||||++||||+|++|++|+++||||++||+|.|++|+||+|+||+.+|+
T Consensus 3 m~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~ 82 (462)
T 3tqo_A 3 MSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAG 82 (462)
T ss_dssp CCCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHH
T ss_pred ceEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee-cCceeecCCCCCCcccccCcc
Q 008191 154 ELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRK 232 (574)
Q Consensus 154 ~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~-~~~v~f~~~~~~~yg~Ls~~~ 232 (574)
++|++|++++++|+++|.++|++|||.+++.+||+|+|++.|+++|++|+++|+||+. +|+||||+++++.||+|++++
T Consensus 83 ~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~ 162 (462)
T 3tqo_A 83 ENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRH 162 (462)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCS
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccccccccCCC
Confidence 9999999999999999999999999998899999999999999999999999999998 799999999999999999999
Q ss_pred cccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHH
Q 008191 233 LEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI 312 (574)
Q Consensus 233 ~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~ 312 (574)
++++..|++++.+.+|+||.||+|||.+++|+|+|++|||.||||||||||+|+.++||.++|||+||.||+||||+|++
T Consensus 163 ~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHhenei 242 (462)
T 3tqo_A 163 LDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEI 242 (462)
T ss_dssp CC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHH
T ss_pred hHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHH
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH
Q 008191 313 AQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYI 392 (574)
Q Consensus 313 A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l 392 (574)
||++|+++++|++||+|+|+|+++|+|||||+||+|+|+|++++|++|++|||++++||+++++||++.+.++.+.+.+|
T Consensus 243 aqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl 322 (462)
T 3tqo_A 243 AQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERF 322 (462)
T ss_dssp HHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHH
Q 008191 393 YQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLES 472 (574)
Q Consensus 393 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~ 472 (574)
++++.++... . . ..+..+.+.|.+||+||||||.|++.|+++++.+|++++... ...
T Consensus 323 ~~~~~~~~~~----------~---~---~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~~-------~~~ 379 (462)
T 3tqo_A 323 YLALRGLPVV----------N---H---EKTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQ-------IEK 379 (462)
T ss_dssp HHHHTTCCC----------------------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTTC-------HHH
T ss_pred HHHHHHhhhc----------c---c---hhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcccc-------HHH
Confidence 9887543110 0 0 113456789999999999999999999999999999875432 122
Q ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeC
Q 008191 473 LAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDS 552 (574)
Q Consensus 473 l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt 552 (574)
+..+...+..++.+|||.....+...+. . ...+.+++|+.||++|++||++|||++||+|||+|.++||.|+||
T Consensus 380 ~~~~~~~~~~~~~vlg~~~~~~~~~~~~---~---~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi~l~D~ 453 (462)
T 3tqo_A 380 AAVLAAELKCLGNIFGLLQYSPEQFLQG---A---KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDS 453 (462)
T ss_dssp HHHHHHHHHHHHGGGTCSCSCHHHHC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCccchhhhhhc---c---ccccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEEc
Confidence 3445677888899999986544332110 0 012345789999999999999999999999999999999999999
Q ss_pred CCCeEEEE
Q 008191 553 PVGTTWRP 560 (574)
Q Consensus 553 ~~Gt~W~~ 560 (574)
|+||+|++
T Consensus 454 ~~g~~w~~ 461 (462)
T 3tqo_A 454 SDGTSWRQ 461 (462)
T ss_dssp --------
T ss_pred CCCcEEEe
Confidence 99999986
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.3e-114 Score=933.28 Aligned_cols=463 Identities=30% Similarity=0.499 Sum_probs=359.8
Q ss_pred CCcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccc-------
Q 008191 72 ASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDV------- 144 (574)
Q Consensus 72 ~~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~------- 144 (574)
..+.|+|||||||+||+|+|.+ +|+||+|||||||.+||||+|++|++|+++||||++||+|.||+|+||+
T Consensus 20 ~~m~l~lyntltr~ke~f~p~~--~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~ 97 (501)
T 3sp1_A 20 GSMILKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL 97 (501)
T ss_dssp --CCEEEEETTTTEEEEECCCS--CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----
T ss_pred CCCeEEEEECCCCccccccccC--cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC
Confidence 3457999999999999999988 9999999999999999999999999999999999999999999999988
Q ss_pred ---cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC
Q 008191 145 ---DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK 221 (574)
Q Consensus 145 ---g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~ 221 (574)
|+||+.+|+++|++|++++++|+++|+++|++|||.+++.++++++|++.|+++|++|+++|+||+++++||||+++
T Consensus 98 DehddKI~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 98 DDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred CCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 99999999999999999999999999999999999988989999999999999999999999999999999999999
Q ss_pred CCCcccccCccc-ccccCCCccccCCCccCccchhhccc--c-cCCCCccccCCcCcCCCCccchhHHHHhhhCCCceee
Q 008191 222 FPEYGQLSGRKL-EDNRAGERVAVDSRKKNPADFALWKS--A-KEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIH 297 (574)
Q Consensus 222 ~~~yg~Ls~~~~-~~~~~g~~v~~~~~k~~~~Df~lwk~--~-~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih 297 (574)
++.||+||++++ +++..|++++++..|+||.||+|||. . ++++|+|++|||.||||||||||+|+.+|||.++|||
T Consensus 178 f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH 257 (501)
T 3sp1_A 178 FKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIH 257 (501)
T ss_dssp CTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEE
T ss_pred cCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEE
Confidence 999999999999 88989999888888999999999998 3 4688999999999999999999999999999999999
Q ss_pred eccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCCCCCC
Q 008191 298 GGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYRSPIN 376 (574)
Q Consensus 298 ~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~~~~~ 376 (574)
+||+||+||||+||+||++|+++++|++||+|+|||+++|+|||||+||+|+|+|++++ |++|++||||+++||+++++
T Consensus 258 ~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~ 337 (501)
T 3sp1_A 258 LGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLK 337 (501)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEE
T ss_pred eeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008191 377 YSVVQLESASER----IFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLK 452 (574)
Q Consensus 377 fs~~~l~~a~~~----l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~ 452 (574)
||++.+.++.+. +.+|++++.++.......... .....+ ...+..+.+.|.+||+||||||.|+++|+++++
T Consensus 338 fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~ 413 (501)
T 3sp1_A 338 FSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNK-DLKNFG---FSVEKEYYDSFVEKISFDLNVAQGLALLWEIIK 413 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHS-CTTSCS---SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccc-cccchh---hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 999999999999 777777776543322110000 000111 234567788999999999999999999999999
Q ss_pred HHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcH
Q 008191 453 TINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEY 532 (574)
Q Consensus 453 ~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf 532 (574)
.+|. .. . .+...+..++.+|||.+.. ..++. ........+++|+.||++|++||++|||
T Consensus 414 ~~~~----~~--------~---~~~~~~~~~~~vlGl~~~~--~~~~~----~~~~~~~~~~~i~~li~~R~~ar~~kd~ 472 (501)
T 3sp1_A 414 SDNL----SF--------V---SKLRLAFIFDEIMSLNLRE--EILKN----LQNHDVVIDENMKALIEERRIAKCEKNF 472 (501)
T ss_dssp CSSS----CH--------H---HHHHHHHHHHHHHCCCHHH--HHHHH----HTTSCCCCCHHHHHHHHHHHHHHHTTCH
T ss_pred Hhcc----CH--------H---HHHHHHHHHHHHcCCCccc--chhhc----ccccchhhHHHHHHHHHHHHHHHHccCH
Confidence 8861 10 0 1125567778999997522 11110 0111234578999999999999999999
Q ss_pred HHHHHHHHHhHhCCcEEEeCCCCeEEEEC
Q 008191 533 EKSDAIRKDLAAVGIALMDSPVGTTWRPA 561 (574)
Q Consensus 533 ~~AD~IRd~L~~~GI~leDt~~Gt~W~~~ 561 (574)
++||+|||+|.++||.|+|+|+||+|++.
T Consensus 473 ~~aD~iRd~L~~~Gi~l~D~~~g~~w~~~ 501 (501)
T 3sp1_A 473 KRADEIRDFFAKKGFVLVDTKEGTKVKRG 501 (501)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------
T ss_pred HHHHHHHHHHHHCCcEEEEcCCCcEEEeC
Confidence 99999999999999999999999999863
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=1.5e-107 Score=883.78 Aligned_cols=458 Identities=46% Similarity=0.819 Sum_probs=354.0
Q ss_pred eeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc
Q 008191 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL 155 (574)
Q Consensus 76 l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~ 155 (574)
|+|||||||+||+|.|.++++|+||+|||||||++||||+|++|++|+++|+||++||+|.|++|+||+|+||+.+|+++
T Consensus 2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~ 81 (461)
T 1li5_A 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81 (461)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT
T ss_pred cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeee-cCceeecCCCCCCcccccCcccc
Q 008191 156 GEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGRKLE 234 (574)
Q Consensus 156 g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~-~~~v~f~~~~~~~yg~Ls~~~~~ 234 (574)
|++|++++++|.++|+++|++|||.++|.++|+|+|++.|++++++|+++|++|+. +|+||||+++++.||+++++.++
T Consensus 82 g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~ 161 (461)
T 1li5_A 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLD 161 (461)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC---
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccccccccccCCCHH
Confidence 99999999999999999999999987799999999999999999999999999999 99999999999999999999988
Q ss_pred cccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHH
Q 008191 235 DNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314 (574)
Q Consensus 235 ~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~ 314 (574)
++.+|++++.+.+|++|.||++||..++|+|+|++|||+|+||||+||++|+.++||.++|||++|+||+||||+||+||
T Consensus 162 ~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq 241 (461)
T 1li5_A 162 QLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241 (461)
T ss_dssp -------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHH
T ss_pred HhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHH
Confidence 88899998888889999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 008191 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQ 394 (574)
Q Consensus 315 ~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~ 394 (574)
++|+.+.+++++|+|+|||+++|+|||||+||+|+|+|++++|++|++|||+|+++|+++++||++.+.++.+.+.++++
T Consensus 242 ~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n 321 (461)
T 1li5_A 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYT 321 (461)
T ss_dssp HHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99997778999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHH
Q 008191 395 TLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLA 474 (574)
Q Consensus 395 ~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~~~~~~~l~ 474 (574)
++.++.. ...+ + .+.++.+.|.++|+||||++.|+++|+++++.+|+|++. . . ..+.
T Consensus 322 ~~~~~~~---------~~~~-d-----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~-~----~---~~~~ 378 (461)
T 1li5_A 322 ALRGTDK---------TVAP-A-----GGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE-D----M---AAAN 378 (461)
T ss_dssp HHTTCCT---------TSCC-C-----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH-C----H---HHHH
T ss_pred HHHHhhc---------CCCH-H-----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc-c----H---HHHH
Confidence 7754310 0011 1 356788899999999999999999999999999999965 2 1 2345
Q ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhCCcEEEeCCC
Q 008191 475 ALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554 (574)
Q Consensus 475 ~~~~~l~~~l~iLGi~p~~~~~i~~~l~~~~~~~~~~~~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~GI~leDt~~ 554 (574)
.+...|..++.+|||......+..+. ... ...+..++|+.||++|++||++|||++||+|||+|.++||.|+|+|+
T Consensus 379 ~~~~~~~~~~~~lG~~~~~~~~~~~~--~~~--~~~~~~~~~~~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi~~~d~~~ 454 (461)
T 1li5_A 379 AMASHLRKLSAVLGLLEQEPEAFLQS--GAQ--ADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQ 454 (461)
T ss_dssp HHHHHHHHHHTTTTCSCSCHHHHC--------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCccChhhhhhc--ccc--cccccHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEEcCC
Confidence 55678888999999964332221100 000 00001146889999999999999999999999999999999999999
Q ss_pred CeEEEE
Q 008191 555 GTTWRP 560 (574)
Q Consensus 555 Gt~W~~ 560 (574)
||+|++
T Consensus 455 g~~w~~ 460 (461)
T 1li5_A 455 GTTWRR 460 (461)
T ss_dssp ------
T ss_pred CcEEEe
Confidence 999985
No 4
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.3e-85 Score=703.02 Aligned_cols=388 Identities=34% Similarity=0.555 Sum_probs=334.5
Q ss_pred CCCcceeeeeccCCCccccccCCCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHH
Q 008191 71 SASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIA 150 (574)
Q Consensus 71 ~~~~~l~~~ntl~~~~~~f~p~~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~ 150 (574)
+..++|+||||+||+|++|.| +++|+||+|||||||++||||+|++|++|+++|+||++||+|.|++|+||+|+||+.
T Consensus 16 ~~~~~~~lynt~~~~~~~f~p--~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~ 93 (414)
T 3c8z_A 16 GRGPALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFE 93 (414)
T ss_dssp SCCCCCEEEETTTTEEEECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHH
T ss_pred CCCCCcEEEeeccCCcccccC--CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHH
Confidence 556789999999999999999 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeec----CceeecCCCCCCcc
Q 008191 151 RANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVD----GDVYFSVDKFPEYG 226 (574)
Q Consensus 151 ~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~----~~v~f~~~~~~~yg 226 (574)
+|++.|++|++++++|.+.|+++|++|||.++|.++|+|+|++.++++|++|+++|++|+++ +++||+++++++||
T Consensus 94 ~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g 173 (414)
T 3c8z_A 94 RAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFG 173 (414)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhH
Confidence 99999999999999999999999999999878999999999999999999999999999998 99999999999999
Q ss_pred cccCcccccccCC--Cc-ccc-CCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeecccc
Q 008191 227 QLSGRKLEDNRAG--ER-VAV-DSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMD 302 (574)
Q Consensus 227 ~Ls~~~~~~~~~g--~~-v~~-~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~D 302 (574)
++++...+++..+ ++ +++ .+.|++|.||++||..++|+|.|++|||.|+||||+||++|+.++||.++|||++|+|
T Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D 253 (414)
T 3c8z_A 174 YESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSD 253 (414)
T ss_dssp TTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGG
T ss_pred hhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccc
Confidence 9988766555322 11 223 3458899999999998899999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhc-cChhhHHHHhhccCCCCCCCCCHH
Q 008191 303 LVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLIGTHYRSPINYSVV 380 (574)
Q Consensus 303 l~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~-~~~d~lR~~ll~~~~~~~~~fs~~ 380 (574)
|+||||+|++||++|+.+. +|.++|+|+|||+++|+|||||+||+|+|+|++++ ||+|++||||++++|+++++||++
T Consensus 254 ~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~ 333 (414)
T 3c8z_A 254 LIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNE 333 (414)
T ss_dssp GTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHH
T ss_pred cccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCHH
Confidence 9999999999999999665 88999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHh
Q 008191 381 QLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHT 460 (574)
Q Consensus 381 ~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~ 460 (574)
.+.++.+.+.+|+++++++ . + + .+.++.+.|.++|+|+||+++|++.|+++++.+|+ ..
T Consensus 334 ~l~~~~~~l~~l~n~~~~~----~-----~---~-------~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~--~~ 392 (414)
T 3c8z_A 334 VLDEANARLARWRSATALP----E-----A---P-------DATDVIARVRQYLADDLDTPKALAALDGWCTDALS--YG 392 (414)
T ss_dssp HHHHHHHHHHHHHHHHTSS----C-----B---S-------CCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHHHHHHHHhc----c-----c---h-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--cc
Confidence 9999999998888876432 0 0 0 12467788999998999999999999999999998 21
Q ss_pred hhcchhhhhHHHHHHHHHHHHHHHhhhccc
Q 008191 461 RKGKKQAMRLESLAALEKTIRNVLTVLGLM 490 (574)
Q Consensus 461 ~~~~~~~~~~~~l~~~~~~l~~~l~iLGi~ 490 (574)
. .. ... ...++..+..||||.
T Consensus 393 ~-~~-~~~-------~~~~~~~~d~vLg~~ 413 (414)
T 3c8z_A 393 G-HD-TES-------PRLVATTVDALLGVD 413 (414)
T ss_dssp C-SB-SSH-------HHHHHHHHHHHHCCC
T ss_pred C-CC-hhh-------HHHHHHHHHHHhCCC
Confidence 1 11 111 124566677888874
No 5
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=2.7e-64 Score=553.38 Aligned_cols=400 Identities=20% Similarity=0.219 Sum_probs=302.8
Q ss_pred ceeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 96 ~v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
+.++|+|+|+|| |++||||+|+++++|+++||+|++||+|.+++|+|+||+||+.+|+++|++|++++++|.+.|.++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 83 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL 83 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 357999999988 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCC--Ccccc--------cCcccccccCCCc
Q 008191 174 MVDLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP--EYGQL--------SGRKLEDNRAGER 241 (574)
Q Consensus 174 l~~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~--~yg~L--------s~~~~~~~~~g~~ 241 (574)
|++|||. +|.++|+++ |++.+++++++|+++|++|++...++||+.+.. .++.+ ++..++....+.-
T Consensus 84 ~~~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~w 162 (497)
T 2csx_A 84 WEFLKIE-YTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSY 162 (497)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCEEE
T ss_pred HHHhCCc-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCce
Confidence 9999995 788999987 999999999999999999999999999987532 12222 1222211111100
Q ss_pred -cccCCC--------ccCccchh----------hcccccCCC-----CccccCCcCcCC---CCccc---------hhHH
Q 008191 242 -VAVDSR--------KKNPADFA----------LWKSAKEGE-----PFWESPWGPGRP---GWHIE---------CSAM 285 (574)
Q Consensus 242 -v~~~~~--------k~~~~Df~----------lwk~~~~g~-----~~w~~~WG~g~P---gWhie---------csam 285 (574)
+.++.+ +.+| ++. -|......+ |.|+++||.++| +|+++ |++|
T Consensus 163 f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~ 241 (497)
T 2csx_A 163 FFRLSKYQDKLLELYEKNP-EFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISAL 241 (497)
T ss_dssp EECTTSSHHHHHHHHHHCT-TSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTT
T ss_pred EEEcHHHHHHHHHHHHhCC-CeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccC
Confidence 001100 1111 111 111111112 446889999999 79987 7777
Q ss_pred HH---hhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhH
Q 008191 286 SA---AYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLAL 362 (574)
Q Consensus 286 ~~---~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~l 362 (574)
.. +++ ++|+|++|+|++||||++|+|++++++..+ .+.|+|||||+++|+|||||+||+|+|.|++++||+|++
T Consensus 242 ~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~g~~~-~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~Dal 318 (497)
T 2csx_A 242 EDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSLGYEL-PKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEV 318 (497)
T ss_dssp TTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHHTCCC-CSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHHCHHHH
T ss_pred CCcchhhC--CceEEEeecchhHhHHHHHHHHHHHcCCCC-CcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHCCcHHH
Confidence 54 455 789999999999999999999999886554 455688899999999999999999999999999999999
Q ss_pred HHHhhc-cCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCC
Q 008191 363 RLFLIG-THYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLH 439 (574)
Q Consensus 363 R~~ll~-~~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n 439 (574)
|||+++ ++++++++|+++.+.++.+. ..++++.+.++...+.+..........+.+++..+.++.+.+.++| ++|+
T Consensus 319 R~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~ 397 (497)
T 2csx_A 319 RYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYENYM-EKVN 397 (497)
T ss_dssp HHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCTTHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH-HccC
Confidence 999998 69999999999999988764 1233444444443333321111113457889999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcch-----h-hhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHH
Q 008191 440 TTVVLAALSDPLKTINDLLHTRKGKK-----Q-AMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQL 501 (574)
Q Consensus 440 ~~~al~~l~~l~~~~N~~~~~~~~~~-----~-~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l 501 (574)
++.|+++|+++++.+|+|++..+++. . +.....+..+...|+.++.+| ||+|+.++++|+.|
T Consensus 398 ~~~a~~~l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L 466 (497)
T 2csx_A 398 FYKAIEEILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQML 466 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHc
Confidence 99999999999999999998876431 1 112234555667777777777 89999999999876
No 6
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.2e-62 Score=538.68 Aligned_cols=394 Identities=20% Similarity=0.210 Sum_probs=306.9
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
++|+|+|+|| |++||||+|+++++|+++||+|++||+|.+++|+|+||++|+.+|+++|+++++++++|.+.|.++|+
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 6899999996 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCC--CcccccCcccccccCCCcccc-------
Q 008191 176 DLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP--EYGQLSGRKLEDNRAGERVAV------- 244 (574)
Q Consensus 176 ~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~--~yg~Ls~~~~~~~~~g~~v~~------- 244 (574)
+|||. +|.++++++ |++.+++++++|+++|++|++++.++||+.+.. .++.+.. ..+.++|..++.
T Consensus 84 ~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~--g~c~~~~~~v~~~~~~~wf 160 (500)
T 2d5b_A 84 LLGIA-YDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVE--GLCPIHGRPVERRKEGNYF 160 (500)
T ss_dssp HTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBT--TBCTTTCSBCEEEEEEEEE
T ss_pred HhCCc-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccC--CcCCCCCCeeeEEecCceE
Confidence 99995 788899987 999999999999999999999889999987632 2222210 001112322211
Q ss_pred ---C--------CCccCccchhhcccc--------cCC--C-----CccccCCcCcCC---------------------C
Q 008191 245 ---D--------SRKKNPADFALWKSA--------KEG--E-----PFWESPWGPGRP---------------------G 277 (574)
Q Consensus 245 ---~--------~~k~~~~Df~lwk~~--------~~g--~-----~~w~~~WG~g~P---------------------g 277 (574)
+ ..++++ +|..|+.. +++ + |.|+.+||.++| |
T Consensus 161 ~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g 239 (500)
T 2d5b_A 161 FRMEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALD 239 (500)
T ss_dssp ECGGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTT
T ss_pred EEcHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcC
Confidence 0 112223 44333221 122 1 224778999999 7
Q ss_pred CccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhhc
Q 008191 278 WHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMEL 356 (574)
Q Consensus 278 Whiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~~ 356 (574)
||++|+ ...++ +.|||++|+||+||||++|+|++++++..+ .+.|+|||||++ +|+|||||+||+|+|.|++++
T Consensus 240 ~~~~~~--~~~~~--p~di~~~G~D~~~fh~~~~~a~~~~~g~~~-~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~ 314 (500)
T 2d5b_A 240 YPEGEA--YRTFW--PHAWHLIGKDILKPHAVFWPTMLKAAGIPM-YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEK 314 (500)
T ss_dssp TTTCHH--HHHHG--GGEEEEEEGGGHHHHHTHHHHHHHHHTCCC-CSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHH
T ss_pred CCCCch--HHHcC--CCeEEEEeechhhhHHHHHHHHHHHcCCCC-CcEEEECceEEeCCCCcccccCCCCCCHHHHHHh
Confidence 999886 34556 569999999999999999999999986544 556688999999 999999999999999999999
Q ss_pred cChhhHHHHhhc-cCCCCCCCCCHHHHHHHHHH-H-HHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHH
Q 008191 357 YHPLALRLFLIG-THYRSPINYSVVQLESASER-I-FYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLAS 433 (574)
Q Consensus 357 ~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~-l-~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~a 433 (574)
||+|++|||+++ ++++++++||++.+.++.+. + ..+.+.+.++...+.+..........+.+++..++++.+.+.++
T Consensus 315 ~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~a 394 (500)
T 2d5b_A 315 YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPL 394 (500)
T ss_dssp HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGGGGGGGGHHHHHHHH
T ss_pred cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999 69999999999999987753 1 12223333332222221111111112367888889999999999
Q ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHhhhcchh----hhh-HHHHHHHHHHHHHHHhhh-ccccccHHHHHHHH
Q 008191 434 MSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQ----AMR-LESLAALEKTIRNVLTVL-GLMSTGYSEVLLQL 501 (574)
Q Consensus 434 m~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~~----~~~-~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l 501 (574)
| ++|+++.|+++|+++++.+|+|++..+++.. ..+ ...+..+...++.++.+| +|+|+.++++|+.|
T Consensus 395 ~-~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l 467 (500)
T 2d5b_A 395 V-RELKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRAL 467 (500)
T ss_dssp H-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHT
T ss_pred H-HccCHHHHHHHHHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHc
Confidence 9 9999999999999999999999998764311 112 234555666777777777 89999999999886
No 7
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=6.9e-62 Score=539.81 Aligned_cols=398 Identities=19% Similarity=0.172 Sum_probs=306.3
Q ss_pred eEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 98 ~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
.+|+|+|.|| |.+||||+++++++|+++||+|++||+|.|++|+||||.||+.+|+++|++|++++++|.+.|+++|+
T Consensus 10 ~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~ 89 (542)
T 3u1f_A 10 VFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFE 89 (542)
T ss_dssp CEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4566665555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCC------------CCcccccCcccccccCCCc
Q 008191 176 DLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF------------PEYGQLSGRKLEDNRAGER 241 (574)
Q Consensus 176 ~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~------------~~yg~Ls~~~~~~~~~g~~ 241 (574)
+|||. +|++.||+ +|.+.++++|.+|+++|++|++.+.||||+.|. +.||... ..+.++|..
T Consensus 90 ~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~---~~~~~sg~~ 165 (542)
T 3u1f_A 90 QMDYS-IDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPC---KVSLESGHV 165 (542)
T ss_dssp HHTCC-CSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEE---EEETTTCCB
T ss_pred HhCCc-cCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccc---cccCCCCCc
Confidence 99996 78898887 699999999999999999999999999999863 2333321 112334554
Q ss_pred cccCCC------------------ccCccchhhccccc--------CCCC--------ccccCCcCcCCC--------Cc
Q 008191 242 VAVDSR------------------KKNPADFALWKSAK--------EGEP--------FWESPWGPGRPG--------WH 279 (574)
Q Consensus 242 v~~~~~------------------k~~~~Df~lwk~~~--------~g~~--------~w~~~WG~g~Pg--------Wh 279 (574)
++.... +.++ ++..|+..+ .+.+ .|...||++.|+ |+
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~ 244 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANP-GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWL 244 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHH
T ss_pred ceeeccccceecchhHHHHHHHHHhhcc-cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeee
Confidence 432100 1111 221221110 1122 233459999997 65
Q ss_pred cchhHHHHh--------------------hhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcc
Q 008191 280 IECSAMSAA--------------------YLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEK 339 (574)
Q Consensus 280 iecsam~~~--------------------~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~K 339 (574)
.+...+... ...+|.|+|++|+|++|||+++|+|++++.+.++ .+.++|||||+.+|+|
T Consensus 245 da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~~-~~~v~~hg~l~~~G~K 323 (542)
T 3u1f_A 245 DALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPL-PKKIVAHGWWTKDRKK 323 (542)
T ss_dssp HHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCC-CSCEEEECCCEETTBC
T ss_pred ccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhcccc-cceeccccceecCCce
Confidence 443333221 1235789999999999999999999999886554 5566888999999999
Q ss_pred cccccCceeehhhhhhccChhhHHHHhhc-cCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhh----hhcC
Q 008191 340 MSKSLGNFFTIRQVMELYHPLALRLFLIG-THYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDA----AALK 412 (574)
Q Consensus 340 MSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~----~~~~ 412 (574)
||||+||+|+|.|++++||+|+|||||++ +++++|++|+++.+.+..|. ..+|+|.+.++......... ....
T Consensus 324 MSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~ 403 (542)
T 3u1f_A 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAY 403 (542)
T ss_dssp CBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCC
T ss_pred eccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchh
Confidence 99999999999999999999999999998 58999999999999888764 33555555554332221111 0112
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----hhh-hHHHHHHHHHHHHHHHhhh
Q 008191 413 DSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----QAM-RLESLAALEKTIRNVLTVL 487 (574)
Q Consensus 413 ~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~~~-~~~~l~~~~~~l~~~l~iL 487 (574)
...++++++.++++.+.+.++| ++|++++|++.|++|++.+|+|++..+++. +.. ...++..+..+|+.++.+|
T Consensus 404 ~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll 482 (542)
T 3u1f_A 404 TEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLL 482 (542)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345788999999999999999 999999999999999999999998876531 122 2334555666777777777
Q ss_pred -ccccccHHHHHHHHH
Q 008191 488 -GLMSTGYSEVLLQLR 502 (574)
Q Consensus 488 -Gi~p~~~~~i~~~l~ 502 (574)
+|+|+.++++|++|+
T Consensus 483 ~P~~P~~aeei~~~Lg 498 (542)
T 3u1f_A 483 SPILPRKSVVIFDMLG 498 (542)
T ss_dssp TTTSHHHHHHHHHHHT
T ss_pred HhHhHHHHHHHHHHCC
Confidence 999999999999874
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=5.8e-61 Score=545.65 Aligned_cols=403 Identities=15% Similarity=0.142 Sum_probs=313.6
Q ss_pred eeEEEcCCCCCCcCcchhhHH-HHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008191 97 VGMYVCGVTPYDLSHIGHARV-YVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMV 175 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~-~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~ 175 (574)
+.|.+..|+|||.+||||+++ +|.+|+++||+|++||+|.|++|+|+||++|+.+|+++|++|++++++|.+.|+++|+
T Consensus 4 ~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~ 83 (722)
T 1rqg_A 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQ 83 (722)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 445555688889999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCC------------CCcc------cc-------
Q 008191 176 DLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKF------------PEYG------QL------- 228 (574)
Q Consensus 176 ~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~------------~~yg------~L------- 228 (574)
+|||. +|.+.|+++ |.+.++++|++|+++|+||++.+.+|||+.|. |.|| .+
T Consensus 84 ~lgis-~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~ 162 (722)
T 1rqg_A 84 RAKIS-FDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRP 162 (722)
T ss_dssp HHTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCC
T ss_pred HhCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccc
Confidence 99995 899999984 99999999999999999999999999999873 3333 22
Q ss_pred -cCccc---ccccCCCccccC----------CCccCccchh---hcccc---------cCCCCcc----ccCCcCcCC--
Q 008191 229 -SGRKL---EDNRAGERVAVD----------SRKKNPADFA---LWKSA---------KEGEPFW----ESPWGPGRP-- 276 (574)
Q Consensus 229 -s~~~~---~~~~~g~~v~~~----------~~k~~~~Df~---lwk~~---------~~g~~~w----~~~WG~g~P-- 276 (574)
++..+ .+.++|..++.. .+++...++. .|... +.|.+.| +.+||+++|
T Consensus 163 l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~ 242 (722)
T 1rqg_A 163 LTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLD 242 (722)
T ss_dssp CCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCC
T ss_pred cChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCcc
Confidence 11111 122345554321 1111111111 24332 3555666 789999999
Q ss_pred --CCc-----------cchhHHHH-------------hhhC--C--CceeeeccccccCccchHHHHHHhhcc-------
Q 008191 277 --GWH-----------IECSAMSA-------------AYLG--H--SFDIHGGGMDLVFPHHENEIAQSCAAC------- 319 (574)
Q Consensus 277 --gWh-----------iecsam~~-------------~~lG--~--~~dih~~G~Dl~fpH~~~~~A~~~a~~------- 319 (574)
||+ ++|.+++. .||+ . ..++|++|+|++|||..+|||++++++
T Consensus 243 ~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~ 322 (722)
T 1rqg_A 243 EEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEV 322 (722)
T ss_dssp CSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSC
T ss_pred ccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCccccc
Confidence 565 44444332 3554 2 245999999999999999999999976
Q ss_pred --C-CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHH--HHHHH
Q 008191 320 --N-NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASER--IFYIY 393 (574)
Q Consensus 320 --~-~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~--l~~l~ 393 (574)
+ +.| +.|+|||||+++|+|||||+||+|+|.|++++||+|++||||++. ++++|++||++.+.+..|. ++++.
T Consensus 323 ~rg~~~P-k~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~ 401 (722)
T 1rqg_A 323 EAEWNLP-YDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLG 401 (722)
T ss_dssp CBCBCCC-SBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHH
T ss_pred ccCCCCC-CEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 2 444 677899999999999999999999999999999999999999997 9999999999999988763 33444
Q ss_pred HHHHHHHHHHhhhhhhh-----cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch---
Q 008191 394 QTLHDCEKALSLLDAAA-----LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK--- 465 (574)
Q Consensus 394 ~~l~~~~~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~--- 465 (574)
|+++++...+..+.... .....+.+++..++++.+.+.++| ++|+++.|++.|++|++.+|+|++..+++.
T Consensus 402 N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~~A~~~i~~~~~~~n~Yi~~~kpw~~~k 480 (722)
T 1rqg_A 402 NFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKRVMSLASFGNRYFDHKQPWKTAK 480 (722)
T ss_dssp HHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhcCchhhcC
Confidence 55544444443321111 112235678889999999999999 999999999999999999999999877542
Q ss_pred -hhh-hHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 466 -QAM-RLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 466 -~~~-~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
... ...++..+...++.++.+| +|+|+.++++|++|+
T Consensus 481 ~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~ 520 (722)
T 1rqg_A 481 EDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLN 520 (722)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcC
Confidence 112 2234555667778777777 899999999999885
No 9
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1e-60 Score=528.21 Aligned_cols=395 Identities=19% Similarity=0.186 Sum_probs=300.7
Q ss_pred eeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008191 97 VGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVD 176 (574)
Q Consensus 97 v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~ 176 (574)
+.+.++.|+|+|++||||+|+++++|+++||+|++||+|.+++|+|+||+||+.+|+++|++|++++++|.++|++++++
T Consensus 14 ~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 93 (524)
T 2x1l_A 14 FYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEK 93 (524)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44444456777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCC--CCcccccCcc--cccc-cCCCcccc-----
Q 008191 177 LHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKF--PEYGQLSGRK--LEDN-RAGERVAV----- 244 (574)
Q Consensus 177 L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~--~~yg~Ls~~~--~~~~-~~g~~v~~----- 244 (574)
|||. +|.+.|+++ |++.+++++++|+++|++|++++.||||+.+. ..++.+.... ..+. .+|..++.
T Consensus 94 lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~q 172 (524)
T 2x1l_A 94 LNIS-FDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQT 172 (524)
T ss_dssp TTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEE
T ss_pred cCCc-CCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCC
Confidence 9996 788999997 99999999999999999999999999999872 2333221000 0000 23333211
Q ss_pred -----CCC--------ccCccchh----------hcccccCCCCcc----c-cCCcCcCCC--------Ccc--------
Q 008191 245 -----DSR--------KKNPADFA----------LWKSAKEGEPFW----E-SPWGPGRPG--------WHI-------- 280 (574)
Q Consensus 245 -----~~~--------k~~~~Df~----------lwk~~~~g~~~w----~-~~WG~g~Pg--------Whi-------- 280 (574)
+.+ +.++ ++. -|- ..+...| . .+||.++|+ |+.
T Consensus 173 wF~~l~~~~~~l~~~~~~~~-~~i~p~~~~~~~~~~~--~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~ 249 (524)
T 2x1l_A 173 YFFRLSAYTDRLLALYEEHP-EFIGPDARRNEIVSFV--SGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTG 249 (524)
T ss_dssp EEECGGGSHHHHHHHHHHCG-GGEESHHHHHHHHHHH--TTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHT
T ss_pred eEeeHHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHH--HcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHH
Confidence 000 0111 111 010 0112223 2 358888873 432
Q ss_pred -----chhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceeehhhhhh
Q 008191 281 -----ECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME 355 (574)
Q Consensus 281 -----ecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~ 355 (574)
+|+.+...++ +.|+|++|+|++||||++|+|++++++..+|.++|+| |||+++|+|||||+||+|+|.|+++
T Consensus 250 ~g~p~~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~h-G~v~~~G~KMSKS~GN~v~p~d~i~ 326 (524)
T 2x1l_A 250 VGFPDTESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAH-GWLLNRGEKMSKSIGNVVDPVNLVD 326 (524)
T ss_dssp TTTTCTTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEE-CCEEECSCSEETTTEESSCHHHHHH
T ss_pred cCCCCCchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEEC-cEEEeCCcccCCcCCCCCCHHHHHH
Confidence 2333444444 6899999999999999999999999877777888776 9999999999999999999999999
Q ss_pred ccChhhHHHHhhc-cCCCCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhhhh-----hcCCCCChhHHHHHH
Q 008191 356 LYHPLALRLFLIG-THYRSPINYSVVQLESASER-----IFYIYQTLHDCEKALSLLDAA-----ALKDSIPPDTVTSIN 424 (574)
Q Consensus 356 ~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~-----l~~l~~~l~~~~~~l~~~~~~-----~~~~~~~~~l~~~l~ 424 (574)
+||+|++|||+++ ++++++++||++.+.++.+. ++|+.+++ ...+.+.... ....+.+.+++..+.
T Consensus 327 ~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~---~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~ 403 (524)
T 2x1l_A 327 TFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRS---LSMVAKNLGAAVPDPGEFTDEDTALLAAAD 403 (524)
T ss_dssp HHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHHSTTBCCCCCCCCHHHHHHHHHHH
T ss_pred HcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCCCCccccchhHHHHHHHHH
Confidence 9999999999999 79999999999999988764 44443332 2222221110 011223567888899
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch--------h-hhhHHHHHHHHHHHHHHHhhh-ccccccH
Q 008191 425 KFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK--------Q-AMRLESLAALEKTIRNVLTVL-GLMSTGY 494 (574)
Q Consensus 425 ~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~--------~-~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~ 494 (574)
++.+.+.++| ++|+++.|+++|++|++.+|+|++..+++. . .....++..+..+++.++.+| ||+|+.+
T Consensus 404 ~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~a 482 (524)
T 2x1l_A 404 ALLERVREHF-DVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPEST 482 (524)
T ss_dssp THHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999 999999999999999999999998776521 1 112234555667777777777 8999999
Q ss_pred HHHHHHHH
Q 008191 495 SEVLLQLR 502 (574)
Q Consensus 495 ~~i~~~l~ 502 (574)
+++|+.|.
T Consensus 483 eei~~~L~ 490 (524)
T 2x1l_A 483 AKLLDLLG 490 (524)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99998863
No 10
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=6.8e-60 Score=522.50 Aligned_cols=410 Identities=20% Similarity=0.199 Sum_probs=301.3
Q ss_pred cccccCCCCceeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHH
Q 008191 87 ELVKPKVEGKVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSR 164 (574)
Q Consensus 87 ~~f~p~~~~~v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~ 164 (574)
.++.|.+-++-++|+|||+|| |++||||+|++|++|+++|++|++||+|.+++|+||||+||+.+|++.|++|+++++
T Consensus 15 ~~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~ 94 (536)
T 4dlp_A 15 QTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLAD 94 (536)
T ss_dssp ---------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHH
T ss_pred cccCCCcCCCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHH
Confidence 455555445568999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccc--cHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc--c-Ccc-cccccC
Q 008191 165 RYCEEFHQDMVDLHCLPPSVEPRVSD--HMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL--S-GRK-LEDNRA 238 (574)
Q Consensus 165 ~~~~~f~~~l~~L~I~~~d~~~r~s~--~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L--s-~~~-~~~~~~ 238 (574)
+|.+.|+++|++|||. +|.+.|+++ |++.+++++++|.++|++|++++.+|||+.|...+..- . +.+ ..+..+
T Consensus 95 ~~~~~~~~~l~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~ 173 (536)
T 4dlp_A 95 RNTSAFRRMAEVLNSS-NDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQ 173 (536)
T ss_dssp HHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTT
T ss_pred HHHHHHHHHHHHcCCC-CCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCC
Confidence 9999999999999997 678888885 99999999999999999999999999999875433221 0 000 001123
Q ss_pred CCccccC----------CC--------ccCccchh----------hcccccCCCCcc-----ccCCcCcCCC--------
Q 008191 239 GERVAVD----------SR--------KKNPADFA----------LWKSAKEGEPFW-----ESPWGPGRPG-------- 277 (574)
Q Consensus 239 g~~v~~~----------~~--------k~~~~Df~----------lwk~~~~g~~~w-----~~~WG~g~Pg-------- 277 (574)
|..++.. .. +.+| +|. -|- +.+...| +..||+++|+
T Consensus 174 g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l--~~~l~D~~ISR~~~~WGipiP~~~~~v~yv 250 (536)
T 4dlp_A 174 GTPVEWVEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFV--KSGLKDLSISRTTFDWGIPVPGDEKHVMYV 250 (536)
T ss_dssp SSBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHH--HTCCCCEECEEC--CCSCBCTTCTTSEECH
T ss_pred CCcceEEeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHH--hcCCCccCCccCCCcCCeeCCCCCCCceEE
Confidence 4433211 00 1111 111 111 1122333 2469999996
Q ss_pred CccchhHHHHhh----------hCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCce
Q 008191 278 WHIECSAMSAAY----------LGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNF 347 (574)
Q Consensus 278 Whiecsam~~~~----------lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~ 347 (574)
|+....++.... -+++.|+|+.|+|+++||+.+|+|++.+++..+|.++++ ||||+++|+|||||+||+
T Consensus 251 Wfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~-hg~v~~~G~KMSKS~GNv 329 (536)
T 4dlp_A 251 WVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFA-HGFLFNRGEKMSKSVGNV 329 (536)
T ss_dssp HHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEE-ECCEEC------------
T ss_pred eeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEe-eeeEeeCCceecccCCCC
Confidence 766555554321 123678999999999999999999999998888888855 599999999999999999
Q ss_pred eehhhhhhccChhhHHHHhhc-cCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhh-----hcCCCCChhH
Q 008191 348 FTIRQVMELYHPLALRLFLIG-THYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAA-----ALKDSIPPDT 419 (574)
Q Consensus 348 i~~~d~l~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~-----~~~~~~~~~l 419 (574)
|+|.|++++||+|++|||+++ .++.++++|+++.+.+..|. ..+++|.++++...+.+.... ......+.++
T Consensus 330 i~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~l 409 (536)
T 4dlp_A 330 IDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAI 409 (536)
T ss_dssp CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHH
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHH
Confidence 999999999999999999999 59999999999999887653 234555555554444332111 0112345789
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----h-hhhHHHHHHHHHHHHHHHhhh-cccccc
Q 008191 420 VTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----Q-AMRLESLAALEKTIRNVLTVL-GLMSTG 493 (574)
Q Consensus 420 ~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~-~~~~~~l~~~~~~l~~~l~iL-Gi~p~~ 493 (574)
+..++++.+.+.++| +++++++|+.+|++|++.+|+|++..+++. . ..+..++..+..+|+.++.+| +|+|+.
T Consensus 410 l~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~ 488 (536)
T 4dlp_A 410 LDQADAALETARKAM-DDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQS 488 (536)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 999999999999999 899999999999999999999999877531 1 122345566677777778787 899999
Q ss_pred HHHHHHHHH
Q 008191 494 YSEVLLQLR 502 (574)
Q Consensus 494 ~~~i~~~l~ 502 (574)
+++++++|+
T Consensus 489 aeei~~~L~ 497 (536)
T 4dlp_A 489 AEKLLDILA 497 (536)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHcC
Confidence 999998863
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=4.6e-60 Score=525.89 Aligned_cols=413 Identities=19% Similarity=0.184 Sum_probs=315.0
Q ss_pred ccccccCCC-CceeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHH
Q 008191 86 RELVKPKVE-GKVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISL 162 (574)
Q Consensus 86 ~~~f~p~~~-~~v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~ 162 (574)
-.+|.|..+ +.-++|+|+|+|| |++||||+|++|++|+++|++|++||+|.+++|+||||+||+.+|++.|++|+++
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~ 93 (564)
T 3kfl_A 14 AQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDF 93 (564)
T ss_dssp ----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHH
T ss_pred hhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHH
Confidence 456766554 3568999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccc--c-C-----cc
Q 008191 163 SRRYCEEFHQDMVDLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQL--S-G-----RK 232 (574)
Q Consensus 163 a~~~~~~f~~~l~~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~L--s-~-----~~ 232 (574)
+++|.+.|+++|++|||. +|.|.|++ +|.+.+++++++|.++|++|++++.+|||+.|...+..- . + ..
T Consensus 94 ~~~~~~~~~~~~~~lgi~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~ 172 (564)
T 3kfl_A 94 TTSVSSEFKQCFQEMNYD-MNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKP 172 (564)
T ss_dssp HHHHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHcCCC-CCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCE
Confidence 999999999999999997 78888888 599999999999999999999999999999875332210 0 0 00
Q ss_pred cc-cccCCCcccc----------CCC--------ccCccchhhcccc--------cCCC----Ccc----ccCCcCcCCC
Q 008191 233 LE-DNRAGERVAV----------DSR--------KKNPADFALWKSA--------KEGE----PFW----ESPWGPGRPG 277 (574)
Q Consensus 233 ~~-~~~~g~~v~~----------~~~--------k~~~~Df~lwk~~--------~~g~----~~w----~~~WG~g~Pg 277 (574)
.. ...+|..++. +.+ +.++ +|...... +.|. +++ +..||+++|+
T Consensus 173 c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~ 251 (564)
T 3kfl_A 173 CKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG 251 (564)
T ss_dssp EEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT
T ss_pred eccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC
Confidence 00 0013444321 110 1111 22111000 1122 344 4679999997
Q ss_pred --------CccchhHHHHh--h-------------h----CCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEe
Q 008191 278 --------WHIECSAMSAA--Y-------------L----GHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHN 330 (574)
Q Consensus 278 --------Whiecsam~~~--~-------------l----G~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~ 330 (574)
|+.....++.. | + .++.|+|++|+|+++||..+|+|++++++..+|.++. .|
T Consensus 252 ~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~-~h 330 (564)
T 3kfl_A 252 DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPERLV-SH 330 (564)
T ss_dssp EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEE-EE
T ss_pred CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCCCCCCcEEE-Ec
Confidence 77666554321 2 1 2356899999999999999999999999888888774 56
Q ss_pred eEEEeCCcccccccCceeehhhhhhccChhhHHHHhhc-cCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhh
Q 008191 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG-THYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLD 407 (574)
Q Consensus 331 g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~ 407 (574)
|||+.+|+|||||+||+|+|.|++++||+|++||||++ .++.++++|+++.+.+..|. ..+++|+++++...+....
T Consensus 331 g~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~ 410 (564)
T 3kfl_A 331 GWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVN 410 (564)
T ss_dssp CCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTT
T ss_pred ccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999 69999999999999987663 4466666666554443111
Q ss_pred hh----hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch----hhhh-HHHHHHHHH
Q 008191 408 AA----ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK----QAMR-LESLAALEK 478 (574)
Q Consensus 408 ~~----~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~----~~~~-~~~l~~~~~ 478 (574)
.. ......+.+++..++++.+.+.++| ++++++.|+.+|++|++.+|+|++..++|. ...+ ..++..+..
T Consensus 411 g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~ 489 (564)
T 3kfl_A 411 GMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTME 489 (564)
T ss_dssp SBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHH
Confidence 10 0112335788999999999999999 899999999999999999999999877531 1222 334556666
Q ss_pred HHHHHHhhh-ccccccHHHHHHHHH
Q 008191 479 TIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 479 ~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.++.++.+| +|+|+.+++++++|+
T Consensus 490 ~l~~l~~lL~P~~P~~ae~i~~~Lg 514 (564)
T 3kfl_A 490 GLRICTMFLQPVMPQKAKEIMDALG 514 (564)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHcC
Confidence 777777777 899999999998873
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=3.4e-59 Score=519.53 Aligned_cols=408 Identities=16% Similarity=0.172 Sum_probs=311.8
Q ss_pred ccCCCCceeEEEcCCCCC--CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHH
Q 008191 90 KPKVEGKVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYC 167 (574)
Q Consensus 90 ~p~~~~~v~~y~cgpt~y--g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~ 167 (574)
.|.+++++++|+|+|+|| |++||||+|+++++|+++|++|++||+|.+++|+||||+||+.+|++.|+++++++++|.
T Consensus 11 ~~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~ 90 (560)
T 3h99_A 11 GSMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMS 90 (560)
T ss_dssp ------CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHH
Confidence 456788999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCC------------CCCcccc-----
Q 008191 168 EEFHQDMVDLHCLPPSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------FPEYGQL----- 228 (574)
Q Consensus 168 ~~f~~~l~~L~I~~~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------~~~yg~L----- 228 (574)
+.|+++|++|||. +|.+.+++ +|.+.+++++++|.++|++|++++.+|||+.+ ||.||..
T Consensus 91 ~~~~~~~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd 169 (560)
T 3h99_A 91 QEHQTDFAGFNIS-YDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGD 169 (560)
T ss_dssp HHHHHHHHHTTCC-CSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETT
T ss_pred HHHHHHHHHcCCC-CCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccc
Confidence 9999999999996 77887777 78999999999999999999999999999875 4445421
Q ss_pred ---------cCcccc---cccCCCccccCCCcc---Cccchh---------------------hcccccCCC----Cccc
Q 008191 229 ---------SGRKLE---DNRAGERVAVDSRKK---NPADFA---------------------LWKSAKEGE----PFWE 268 (574)
Q Consensus 229 ---------s~~~~~---~~~~g~~v~~~~~k~---~~~Df~---------------------lwk~~~~g~----~~w~ 268 (574)
.+..+. +.++|..+.....+. .-.+|. .|.. .+. ++++
T Consensus 170 ~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~--~~l~D~~IsR~ 247 (560)
T 3h99_A 170 NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFE--SGLQQWDISRD 247 (560)
T ss_dssp BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHH--HCCCCEECEEE
T ss_pred hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh--cCCCCCCcccc
Confidence 111111 122344432110000 000111 1111 122 2344
Q ss_pred c-CCcCcCCC--------CccchhHHHHhh--h----C--------CCce-----eeeccccccCccchHHHHHHhhccC
Q 008191 269 S-PWGPGRPG--------WHIECSAMSAAY--L----G--------HSFD-----IHGGGMDLVFPHHENEIAQSCAACN 320 (574)
Q Consensus 269 ~-~WG~g~Pg--------Whiecsam~~~~--l----G--------~~~d-----ih~~G~Dl~fpH~~~~~A~~~a~~~ 320 (574)
. .||+++|+ |+.+..++.... + | ++.| +|++|+||++||+.+|+|++++++.
T Consensus 248 ~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~ 327 (560)
T 3h99_A 248 APYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNF 327 (560)
T ss_dssp SSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB
T ss_pred CCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCC
Confidence 4 58999995 766555543221 0 1 2344 9999999999999999999999988
Q ss_pred CCCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCC-CCCCCCHHHHHHHHHH--HHHHHHHH
Q 008191 321 NSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYR-SPINYSVVQLESASER--IFYIYQTL 396 (574)
Q Consensus 321 ~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~-~~~~fs~~~l~~a~~~--l~~l~~~l 396 (574)
++|.++++ ||||+++|+|||||+||+|+|.|++++||+|++||||++. +.. ++++|+++.+.+..+. ..+++|.+
T Consensus 328 ~~p~~v~~-hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~ 406 (560)
T 3h99_A 328 RKPSNLFV-HGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA 406 (560)
T ss_dssp CCCSEEEE-ECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHH
T ss_pred CCCcEEEE-EeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 77777755 6999999999999999999999999999999999999996 556 8999999998875542 23445555
Q ss_pred HHHHHHHhhhhhh-hcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcch-------hhh
Q 008191 397 HDCEKALSLLDAA-ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKK-------QAM 468 (574)
Q Consensus 397 ~~~~~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~~-------~~~ 468 (574)
.++...+.+.... ......+.+++..++++.+.+.++| ++++++.|+.+|++|++.+|+|++..+++. ...
T Consensus 407 ~R~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~ 485 (560)
T 3h99_A 407 SRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDAD 485 (560)
T ss_dssp HTTHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTCHHH
T ss_pred HHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCcCcHHH
Confidence 4544444332111 1123467899999999999999999 999999999999999999999999877431 122
Q ss_pred hHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 469 RLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 469 ~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+..++..+..+|+.++.+| +|+|+.++++|++|+
T Consensus 486 ~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~ 520 (560)
T 3h99_A 486 LQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN 520 (560)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcC
Confidence 3344556667888888888 899999999998874
No 13
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=1.6e-51 Score=458.84 Aligned_cols=378 Identities=16% Similarity=0.109 Sum_probs=287.0
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHH---HH----------------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKI---IA---------------------- 150 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI---~~---------------------- 150 (574)
+|.||+|||||||++||||+|++|++|+++|+|++.||+|.++++++|+|.++ +.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 89999999999999999999999999999999999999999999999998332 21
Q ss_pred ---------------------HHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCccccccc--HHHHHHHHHHHHHCCc
Q 008191 151 ---------------------RANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDH--MPHIIDMITQILDNGF 207 (574)
Q Consensus 151 ---------------------~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~--~~~i~~~i~~L~~kG~ 207 (574)
++.+.|. .+++++.+.++|+++|++|||. +|.++++|++ .+.+++++++|.++|+
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~-~D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNAR-YDLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCC-CSEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCE-eEEeccCCcccccchHHHHHHHHHHCCC
Confidence 1134455 4899999999999999999997 6999999977 8899999999999999
Q ss_pred ee-----eecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccch--hhcc-------cccCCCCccccCCcC
Q 008191 208 AY-----RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF--ALWK-------SAKEGEPFWESPWGP 273 (574)
Q Consensus 208 aY-----~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df--~lwk-------~~~~g~~~w~~~WG~ 273 (574)
+| +.+|.+|++++.+.....+... +....+|.... ...|+ ++|| ..+ +.|.+|||
T Consensus 262 ~y~~~~g~~~G~~~~~~~~~g~~~~l~~~-vi~ksdG~~~Y------~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~- 330 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDASPVIPGLEDPFF-VLLRSNGTATY------YAKDIAFQFWKMGILEGLRFR---PYENPYYP- 330 (592)
T ss_dssp EECCSSSTTTTCEEEECTTTSCSCSCCEE-EEECTTSCBCH------HHHHHHHHHHHTTSSCCCEEE---ECCCSSCT-
T ss_pred cccCcccCcCCCEEEechhcCCCCCCCce-EEEecCCceEE------ecchHHHHHHHhhhhhhhhhh---hhhcCcch-
Confidence 99 7788888876654211111101 11112232211 12355 7886 322 35789997
Q ss_pred cCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCC-ceEEEEe--eEEEeCCcccccccCceeeh
Q 008191 274 GRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSH-ISYWIHN--GFVTIDSEKMSKSLGNFFTI 350 (574)
Q Consensus 274 g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~-~~~~~h~--g~v~~~G~KMSKS~Gn~i~~ 350 (574)
+|+||++|+.|....++..++|++.+.++-|++. .+.+.+++. ++ ...|.|. |||+++|+|||||+||+|++
T Consensus 331 -r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~---~~~~~alG~-~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l 405 (592)
T 1iq0_A 331 -GLRTSAPEGEAYTPKAEETINVVDVRQSHPQALV---RAALALAGY-PALAEKAHHLAYETVLLEGRQMSGRKGLAVSV 405 (592)
T ss_dssp -TCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHH---HHHHHHTTC-HHHHTTEEEEEECCEEETTBCSCC----CCBH
T ss_pred -hhcccccCcccCCCCCCEEEEEEeccHHHHHHHH---HHHHHHcCC-CCCCCcEEEEEeeEEEcCCCcccCCCCCccCH
Confidence 8999999999965455555666665544433332 233344443 33 3456666 77999999999999999999
Q ss_pred hhhhhc-------------------------cChhhHHHHhhccCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 008191 351 RQVMEL-------------------------YHPLALRLFLIGTHYRSPINYSVVQLESASER-IFYIYQTLHDCEKALS 404 (574)
Q Consensus 351 ~d~l~~-------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~-l~~l~~~l~~~~~~l~ 404 (574)
+|++++ +|+|++|||+|+.+++++++||++.+.+..+. ..++++++.++...+.
T Consensus 406 ~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~ 485 (592)
T 1iq0_A 406 DEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILR 485 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999998 99999999999999999999999999988763 3367777778877776
Q ss_pred hhhhhhc-----CCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhh-------hc--c---hhh
Q 008191 405 LLDAAAL-----KDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTR-------KG--K---KQA 467 (574)
Q Consensus 405 ~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~-------~~--~---~~~ 467 (574)
++...+. ..+.+.+++..+.++.+.+.+++ ++++++.++.+|++|++.+|+|++.+ +. + ...
T Consensus 486 k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~ 564 (592)
T 1iq0_A 486 KAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRE 564 (592)
T ss_dssp HHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTSCTTHHH
T ss_pred hhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCCCHHHHH
Confidence 6531110 11123457778889999999999 99999999999999999999999988 42 1 124
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccc
Q 008191 468 MRLESLAALEKTIRNVLTVLGLMST 492 (574)
Q Consensus 468 ~~~~~l~~~~~~l~~~l~iLGi~p~ 492 (574)
.|+.++.++..+|.+.|.+|||.+.
T Consensus 565 ~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 565 LRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 5788889999999999999999763
No 14
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=5.7e-49 Score=452.63 Aligned_cols=403 Identities=19% Similarity=0.203 Sum_probs=298.4
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHH----cCCChH-----------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE----LGEDPI----------- 160 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~----~g~~~~----------- 160 (574)
+..++.++|+|+|.+||||++++++.|+++||.|++||+|.+++|+|+||.+|..++++ .|+++.
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~ 114 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV 114 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHH
Confidence 45566667888899999999999999999999999999999999999999998887763 476653
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCCCccc---cc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCccc-------
Q 008191 161 -SLSRRYCEEFHQDMVDLHCLPPSVEPR---VS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ------- 227 (574)
Q Consensus 161 -e~a~~~~~~f~~~l~~L~I~~~d~~~r---~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~------- 227 (574)
+++++|.+.+.++|++||+. .|+ .| |+ +|...++++|.+|+++|+||++...|+||+.|...+..
T Consensus 115 ~~~~~~~~~~~~~q~~rlG~s-~Dw-~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e 192 (862)
T 1gax_A 115 WQWKEESGGTILKQLKRLGAS-ADW-SREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEP 192 (862)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CCG-GGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCcc-ccC-CCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCcccccccccccc
Confidence 77999999999999999997 453 33 32 69999999999999999999999999999986321110
Q ss_pred ---------------------------------------------ccCccccc----------------ccCCCccccCC
Q 008191 228 ---------------------------------------------LSGRKLED----------------NRAGERVAVDS 246 (574)
Q Consensus 228 ---------------------------------------------Ls~~~~~~----------------~~~g~~v~~~~ 246 (574)
|.|..+.. +..|+.+....
T Consensus 193 ~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~ 272 (862)
T 1gax_A 193 TPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVT 272 (862)
T ss_dssp EEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECC
T ss_pred ccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCCCCcceEec
Confidence 00100000 00111100000
Q ss_pred CccCccchhhccc--------------------------------------------------------------c----
Q 008191 247 RKKNPADFALWKS--------------------------------------------------------------A---- 260 (574)
Q Consensus 247 ~k~~~~Df~lwk~--------------------------------------------------------------~---- 260 (574)
..+++.||.+++. .
T Consensus 273 Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~ 352 (862)
T 1gax_A 273 PAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIE 352 (862)
T ss_dssp GGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCC
T ss_pred CCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEE
Confidence 0011111111100 0
Q ss_pred ----------------------cC-------------------CCCcc----ccCCcCcCCCCccc-hhHH---------
Q 008191 261 ----------------------KE-------------------GEPFW----ESPWGPGRPGWHIE-CSAM--------- 285 (574)
Q Consensus 261 ----------------------~~-------------------g~~~w----~~~WG~g~PgWhie-csam--------- 285 (574)
+. +...| ...||.+.|.|+++ |..+
T Consensus 353 ~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~l~ 432 (862)
T 1gax_A 353 YAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYL 432 (862)
T ss_dssp EEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGGTT
T ss_pred EEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEecccccc
Confidence 00 11123 35699999988753 3100
Q ss_pred -------------------------HH-----hhhC-----------CCceeeeccccccCccchHHHHHHhhccCC-CC
Q 008191 286 -------------------------SA-----AYLG-----------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SH 323 (574)
Q Consensus 286 -------------------------~~-----~~lG-----------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~ 323 (574)
.+ ..+| +|.|+|++|+|++|+|+.+.++++.++.++ ||
T Consensus 433 ~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pf 512 (862)
T 1gax_A 433 EDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPF 512 (862)
T ss_dssp CCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSB
T ss_pred ccchhhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcc
Confidence 00 0122 478999999999999999999999988776 67
Q ss_pred ceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008191 324 ISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESASERIFYIYQTLHDCEK 401 (574)
Q Consensus 324 ~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~ 401 (574)
.++|+| |+|+ .+|+|||||+||+|+|.|++++||+|++||||++. +++++++|+++.++.+.+.+.+++|+++.+..
T Consensus 513 k~v~~h-G~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~ 591 (862)
T 1gax_A 513 KTVLLH-GLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLL 591 (862)
T ss_dssp SEEEEE-CCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEe-eeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889875 8887 59999999999999999999999999999999995 99999999999999999999999998765544
Q ss_pred HHhhhhh-hhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhcchhhhhHHHHHHHHH
Q 008191 402 ALSLLDA-AALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKGKKQAMRLESLAALEK 478 (574)
Q Consensus 402 ~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~~~~~~~~~~l~~~~~ 478 (574)
.+..... .......+++++..++++.+.+.++| ++|+++.|++.|++|+ ..+|.|++..+.+....+......+..
T Consensus 592 ~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~l~~ 670 (862)
T 1gax_A 592 SREGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEE 670 (862)
T ss_dssp HSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTTBHHHHHHHHH
T ss_pred cccCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhccHHHHHHHHHH
Confidence 3322110 01112345788999999999999999 9999999999999999 468999987764311012334456667
Q ss_pred HHHHHHhhh-ccccccHHHHHHHHH
Q 008191 479 TIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 479 ~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+|..++.+| +|+|+.++++|+.|.
T Consensus 671 ~l~~~~~lL~P~~P~~aEeiw~~L~ 695 (862)
T 1gax_A 671 VLAVLLKLLHPMMPFLTSELYQALT 695 (862)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 778888887 899999999999985
No 15
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.8e-49 Score=443.87 Aligned_cols=379 Identities=19% Similarity=0.144 Sum_probs=286.6
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHH-------------------------
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK------------------------- 147 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~k------------------------- 147 (574)
.+++|.||+|||||+|++||||+|++|++|+|+|+|++.||+|.++++++|+|.+
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 4578999999999999999999999999999999999999999999999998654
Q ss_pred --------------HHHHHHHc-------------------C-CChHHHHHHHHHHHHHHHHhcCCCCCCCccccccc--
Q 008191 148 --------------IIARANEL-------------------G-EDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDH-- 191 (574)
Q Consensus 148 --------------I~~~A~~~-------------------g-~~~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~-- 191 (574)
+...|++. | ..++++++.+.++|+++|++|||. +|.++++|++
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~-~D~~~~es~~~~ 275 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVK-YDLLVWESDIVR 275 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCC-CSEEEEHHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCc-cccccCcCcccc
Confidence 22223332 3 455999999999999999999997 6999999987
Q ss_pred HHHHHHHHHHHHHCCcee-----eecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccch--hhcc------
Q 008191 192 MPHIIDMITQILDNGFAY-----RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF--ALWK------ 258 (574)
Q Consensus 192 ~~~i~~~i~~L~~kG~aY-----~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df--~lwk------ 258 (574)
.+.+++++++|.++|++| +.+|.+|++++.+.....+..+ +....+|.... ...|+ ++||
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~~~~-v~~ksdG~~~Y------~~~Diay~~~K~~ll~~ 348 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPIL-VLRRSDGTATY------TGKDIAYHLWKFGKIDV 348 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSCCEE-EEECTTSCBCH------HHHHHHHHHHHTTCSCC
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCccccCce-EEEecCCcccc------chhhHHHHHHHhhcccc
Confidence 889999999999999999 7789999887654211111101 11112232211 13466 7786
Q ss_pred --cccCC-CCcc-ccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCC-ceEEEEe--e
Q 008191 259 --SAKEG-EPFW-ESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSH-ISYWIHN--G 331 (574)
Q Consensus 259 --~~~~g-~~~w-~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~-~~~~~h~--g 331 (574)
..++. ++.| .+|||+|+|| +...++..++|++.|.++-|.+ ..+.+.+++. ++ ++.|.|. |
T Consensus 349 ~fr~~~~~~~~~~~~~wG~~~Pg--------~~~~~d~~IyV~g~~q~~~~~~---l~~~l~~lG~-~~~~~~~~h~~~g 416 (629)
T 2zue_A 349 DLLYKEWDSTTWTTAPDGKSMPN--------KFGNANIVINVIGAEQKHPQLA---IKYALQLLGF-EDAAANLYHLAYE 416 (629)
T ss_dssp CCEEEECSSSCEEEEEEEEECTT--------SSCCCSEEEEEEEGGGHHHHHH---HHHHHHHTTC-HHHHHTEEEEEEC
T ss_pred cccCCcccccccccCCCCCCCCC--------ccCCCCcEEEEEeCcHhhHHHH---HHHHHHHcCC-CCCCCeEEEEEee
Confidence 33322 3345 4799999998 1112334456666666543332 2344444444 34 4456666 8
Q ss_pred EEEeCCcccccccC--ceeehhhhhhc---------------------------cChhhHHHHhhccCCCCCCCCCHHHH
Q 008191 332 FVTIDSEKMSKSLG--NFFTIRQVMEL---------------------------YHPLALRLFLIGTHYRSPINYSVVQL 382 (574)
Q Consensus 332 ~v~~~G~KMSKS~G--n~i~~~d~l~~---------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l 382 (574)
||+++|+|||||+| |+|+++|++++ +|++++||++|+.+++++++||++.+
T Consensus 417 ~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~ 496 (629)
T 2zue_A 417 HVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDV 496 (629)
T ss_dssp CEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHH
T ss_pred eEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHH
Confidence 89999999999999 99999999998 99999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhhhhhh------------c---CCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHH
Q 008191 383 ESASERIF-YIYQTLHDCEKALSLLDAAA------------L---KDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAA 446 (574)
Q Consensus 383 ~~a~~~l~-~l~~~l~~~~~~l~~~~~~~------------~---~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~ 446 (574)
.+..+..+ ++.++..|+.+.+.++...+ . ..+.+.+|+..+.++++.+.+++ ++++++.++.+
T Consensus 497 ~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~p~~l~~y 575 (629)
T 2zue_A 497 LNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAG-KDVKPHLIAWF 575 (629)
T ss_dssp SCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HTTCTHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 87765333 56666677766665532111 0 11223567888999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhhcc-----hhhhhHHHHHHHHHHHHHHHhhhccccc
Q 008191 447 LSDPLKTINDLLHTRKGK-----KQAMRLESLAALEKTIRNVLTVLGLMST 492 (574)
Q Consensus 447 l~~l~~~~N~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~l~iLGi~p~ 492 (574)
|++|++.+|+||+.++.- ....|+.++.++..+|.+.|.+|||.+.
T Consensus 576 l~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 576 ANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999987631 1246888889999999999999999763
No 16
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=4e-48 Score=447.11 Aligned_cols=406 Identities=16% Similarity=0.168 Sum_probs=294.8
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CCCh---------------
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GEDP--------------- 159 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~~~--------------- 159 (574)
+..++...|+|+|.+||||+++++++|+++||+|++||+|.+++|+|+||.+|+.+|.+. |.++
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~ 118 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQA 118 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHH
Confidence 334444567777999999999999999999999999999999999999999999999985 8764
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCC-CCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCCC---------cc
Q 008191 160 -ISLSRRYCEEFHQDMVDLHCLP-PSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPE---------YG 226 (574)
Q Consensus 160 -~e~a~~~~~~f~~~l~~L~I~~-~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~---------yg 226 (574)
++++++|.+.+++++++||+.. .+.+.+|+ +|...++++|.+|+++|++|++...|+||+.|... |.
T Consensus 119 ~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~ 198 (821)
T 1ile_A 119 CRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYK 198 (821)
T ss_dssp HHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcc
Confidence 5788899999999999999642 34455554 68899999999999999999999999999986321 11
Q ss_pred c-----------ccCc------c----------------------cc---------------------------------
Q 008191 227 Q-----------LSGR------K----------------------LE--------------------------------- 234 (574)
Q Consensus 227 ~-----------Ls~~------~----------------------~~--------------------------------- 234 (574)
. +.+. . ++
T Consensus 199 ~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 278 (821)
T 1ile_A 199 EIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKT 278 (821)
T ss_dssp EEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEE
T ss_pred cccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEEE
Confidence 0 0000 0 00
Q ss_pred -------------------------------cccCCCccccCCCccCccchhh---------------------------
Q 008191 235 -------------------------------DNRAGERVAVDSRKKNPADFAL--------------------------- 256 (574)
Q Consensus 235 -------------------------------~~~~g~~v~~~~~k~~~~Df~l--------------------------- 256 (574)
.+..|+.+......+++.||..
T Consensus 279 ~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~G~~ 358 (821)
T 1ile_A 279 FPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKGLY 358 (821)
T ss_dssp ECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGGGTTCB
T ss_pred echHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCcccCcCCCC
Confidence 0000000000000011112211
Q ss_pred -----------------------------------------------------------------ccccc--C-------
Q 008191 257 -----------------------------------------------------------------WKSAK--E------- 262 (574)
Q Consensus 257 -----------------------------------------------------------------wk~~~--~------- 262 (574)
|.... .
T Consensus 359 ~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l 438 (821)
T 1ile_A 359 FREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWL 438 (821)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHHHH
T ss_pred HHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEECchhhHhHHHHHH
Confidence 10000 0
Q ss_pred -CCCcc----ccCCcCcCCCCccc---------------------------------------h----------------
Q 008191 263 -GEPFW----ESPWGPGRPGWHIE---------------------------------------C---------------- 282 (574)
Q Consensus 263 -g~~~w----~~~WG~g~PgWhie---------------------------------------c---------------- 282 (574)
+...| ...||.+.|-|+.+ |
T Consensus 439 ~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~W 518 (821)
T 1ile_A 439 KNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVW 518 (821)
T ss_dssp HTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHH
T ss_pred hCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhccccccee
Confidence 12233 34699999977531 1
Q ss_pred --hHHH-HhhhC------------CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccC
Q 008191 283 --SAMS-AAYLG------------HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLG 345 (574)
Q Consensus 283 --sam~-~~~lG------------~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~G 345 (574)
|... ...+| +|.|+|++|+||+|+|+.+..+++.++.+. ||.++|+| |||+. +|+|||||+|
T Consensus 519 fdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~h-g~vl~~~G~KMSKS~G 597 (821)
T 1ile_A 519 YDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQKMSKSKG 597 (821)
T ss_dssp HHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSCCCTTTT
T ss_pred cccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEE-eeEECCCCCCCCccCC
Confidence 1110 01122 368999999999999999999999998765 78999886 77764 9999999999
Q ss_pred ceeehhhhhhccChhhHHHHhhcc-CCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHH--Hhhhhh-h----hcCCCCC
Q 008191 346 NFFTIRQVMELYHPLALRLFLIGT-HYRSPINYSVVQLESA-SERIFYIYQTLHDCEKA--LSLLDA-A----ALKDSIP 416 (574)
Q Consensus 346 n~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~fs~~~l~~a-~~~l~~l~~~l~~~~~~--l~~~~~-~----~~~~~~~ 416 (574)
|+|+|.|++++||+|++||||++. +++++++||++.+.++ .+.+.+|+|+++++... +..... . ......+
T Consensus 598 NvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 677 (821)
T 1ile_A 598 NVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMD 677 (821)
T ss_dssp CCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHH
T ss_pred CCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHH
Confidence 999999999999999999999997 6999999999999995 66788888888765422 111100 0 0111234
Q ss_pred hhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH--HHHHHHHHhhhc--c---hhhhhHHHHHHHHHHHHHHHhhh-c
Q 008191 417 PDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPL--KTINDLLHTRKG--K---KQAMRLESLAALEKTIRNVLTVL-G 488 (574)
Q Consensus 417 ~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~--~~~N~~~~~~~~--~---~~~~~~~~l~~~~~~l~~~l~iL-G 488 (574)
.+++..++++.+.+.++| ++|+++.|++.|++|+ ...|.|++..+. + ....+......+..+|+.++.+| +
T Consensus 678 ~~ll~~l~~~~~~v~~a~-e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~r~~~~~~l~~~l~~~~~lLaP 756 (821)
T 1ile_A 678 RWLLARMQDLIQRVTEAL-EAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAP 756 (821)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 678888999999999999 8999999999999999 678989877542 1 11123344555667778888887 8
Q ss_pred cccccHHHHHHHHHH
Q 008191 489 LMSTGYSEVLLQLRE 503 (574)
Q Consensus 489 i~p~~~~~i~~~l~~ 503 (574)
|+|+.++++|+.|..
T Consensus 757 ~~P~~aeelw~~L~~ 771 (821)
T 1ile_A 757 FTPFLAEVLWQNLVR 771 (821)
T ss_dssp TSTTHHHHHHHHHTT
T ss_pred ccchHHHHHHHhccc
Confidence 999999999999853
No 17
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-46 Score=434.91 Aligned_cols=204 Identities=16% Similarity=0.186 Sum_probs=166.7
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhc-c
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG-T 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~ 369 (574)
+|+|+|++|+||+||||.++++++.++.+. ++++.|+|||||+++|+|||||+||+|+|.|++++||+|++|||+++ +
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHC
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcC
Confidence 478999999999999999999999987764 56688899999999999999999999999999999999999999985 6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHH-HH
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAA-LS 448 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~-l~ 448 (574)
+++++++||++.+..+.+.+.+++++++++.... ..........+.+++..++++.+.+.++| ++|+++.|+.. ++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~--~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~ 758 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE--VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (810)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC--CCSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc--CcccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 9999999999999999999999998876543210 00000111235678889999999999999 99999999985 47
Q ss_pred HHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHH
Q 008191 449 DPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQL 501 (574)
Q Consensus 449 ~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l 501 (574)
++++.+|+|++..+... +......+..+|+.++.+| +|+|+.++++|+.|
T Consensus 759 ~l~~~~n~yi~~~k~~~---~~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~L 809 (810)
T 1wkb_A 759 SIMNDLRWYLRRTEGRD---DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809 (810)
T ss_dssp HHHHHHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcc---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 99999999998765221 1111345666777777777 89999999999764
No 18
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.6e-46 Score=435.65 Aligned_cols=405 Identities=19% Similarity=0.202 Sum_probs=299.2
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCCh------------HHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDP------------ISLS 163 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~------------~e~a 163 (574)
+..+....|+|+|.+||||++++++.|+++||.|++||+|.|++|+|+||.+|+.+|++.|+++ ++++
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~ 128 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFA 128 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHH
Confidence 3445555677889999999999999999999999999999999999999999999999999876 6899
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------Cccc------
Q 008191 164 RRYCEEFHQDMVDLHCLP-PSVEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------EYGQ------ 227 (574)
Q Consensus 164 ~~~~~~f~~~l~~L~I~~-~d~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------~yg~------ 227 (574)
++|.+.+++++++||+.. .+.+.+|+ +|...++++|.+|+++|++|++...|+||+.|.. .|+.
T Consensus 129 ~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~ 208 (917)
T 1ffy_A 129 LEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASI 208 (917)
T ss_dssp HHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCceE
Confidence 999999999999999973 23444454 6889999999999999999999999999988632 1100
Q ss_pred -----cc------------------------------------------Cc-------------------ccc----ccc
Q 008191 228 -----LS------------------------------------------GR-------------------KLE----DNR 237 (574)
Q Consensus 228 -----Ls------------------------------------------~~-------------------~~~----~~~ 237 (574)
+. +. ... .-.
T Consensus 209 ~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~ 288 (917)
T 1ffy_A 209 YVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEY 288 (917)
T ss_dssp ECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCC
T ss_pred EEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeeee
Confidence 00 00 000 000
Q ss_pred CCC----------------------ccccC--------CCccCccchhhcccc---------------------------
Q 008191 238 AGE----------------------RVAVD--------SRKKNPADFALWKSA--------------------------- 260 (574)
Q Consensus 238 ~g~----------------------~v~~~--------~~k~~~~Df~lwk~~--------------------------- 260 (574)
.|. .|..+ ...+++.||..++..
T Consensus 289 ~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~ 368 (917)
T 1ffy_A 289 TGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYD 368 (917)
T ss_dssp CTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSS
T ss_pred ecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCHH
Confidence 000 00000 001112233222210
Q ss_pred ---------------------------------cC-------------------------------------------CC
Q 008191 261 ---------------------------------KE-------------------------------------------GE 264 (574)
Q Consensus 261 ---------------------------------~~-------------------------------------------g~ 264 (574)
++ +.
T Consensus 369 ~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~~~ 448 (917)
T 1ffy_A 369 KANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDR 448 (917)
T ss_dssp HHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHHhcC
Confidence 00 00
Q ss_pred Ccc----ccCCcCcCCCCccch----------------------hH-----------------------H----------
Q 008191 265 PFW----ESPWGPGRPGWHIEC----------------------SA-----------------------M---------- 285 (574)
Q Consensus 265 ~~w----~~~WG~g~PgWhiec----------------------sa-----------------------m---------- 285 (574)
+.| ...||.+.|-|+.+- .+ +
T Consensus 449 ~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~W 528 (917)
T 1ffy_A 449 GEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVW 528 (917)
T ss_dssp CCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHH
T ss_pred ccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCee
Confidence 123 346999999876430 00 0
Q ss_pred -----H-Hhh------hCCCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEe-CCcccccccCceeehh
Q 008191 286 -----S-AAY------LGHSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTI-DSEKMSKSLGNFFTIR 351 (574)
Q Consensus 286 -----~-~~~------lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~ 351 (574)
+ ... +.+|.|+|++|+|++++|....++++.++.+. |+.++++| |||+. +|+|||||+||+|+|.
T Consensus 529 fdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV~P~ 607 (917)
T 1ffy_A 529 FDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPD 607 (917)
T ss_dssp HHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHH
T ss_pred cCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcCChH
Confidence 0 000 12468999999999998888888888887665 67888775 99996 9999999999999999
Q ss_pred hhhhccChhhHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhcCCCCChhHHHHHHH
Q 008191 352 QVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDA------AALKDSIPPDTVTSINK 425 (574)
Q Consensus 352 d~l~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~------~~~~~~~~~~l~~~l~~ 425 (574)
|++++||+|++|||+++++++++++|+++.++++.+.+.+|+++++.+...+..+.. .......+++++..+++
T Consensus 608 dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~ 687 (917)
T 1ffy_A 608 QVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLRE 687 (917)
T ss_dssp HHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988776554433211 01122345788889999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH--HHHHHHHhhhcc------hhhhhHHHHHHHHHHHHHHHhhh-ccccccHHH
Q 008191 426 FHNDFLASMSDDLHTTVVLAALSDPLK--TINDLLHTRKGK------KQAMRLESLAALEKTIRNVLTVL-GLMSTGYSE 496 (574)
Q Consensus 426 ~~~~~~~am~dd~n~~~al~~l~~l~~--~~N~~~~~~~~~------~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~ 496 (574)
+.+.+.++| ++|+++.|++.|++|+. ..|.|++..+.. ....+......+..++..++.+| +|+|+.+++
T Consensus 688 ~~~~v~~a~-e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEe 766 (917)
T 1ffy_A 688 FTASTINNY-ENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEE 766 (917)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 999999999 99999999999999998 567788765531 11223334445556677777777 899999999
Q ss_pred HHHHHH
Q 008191 497 VLLQLR 502 (574)
Q Consensus 497 i~~~l~ 502 (574)
+|+.|.
T Consensus 767 iw~~l~ 772 (917)
T 1ffy_A 767 VWSHTP 772 (917)
T ss_dssp HHTTST
T ss_pred HHHHcc
Confidence 999875
No 19
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.6e-46 Score=434.23 Aligned_cols=205 Identities=16% Similarity=0.178 Sum_probs=169.1
Q ss_pred CCceeeeccccccCccchHHHHHHhhccCC-CCceEEEEeeEEEeCCcccccccCceeehhhhhhccChhhHHHHhhc-c
Q 008191 292 HSFDIHGGGMDLVFPHHENEIAQSCAACNN-SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG-T 369 (574)
Q Consensus 292 ~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-~~~~~~~h~g~v~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~ 369 (574)
+|.|+|++|+||+||||.++++++.++.+. ++++.|+|||||+.+|+|||||+||+|+|.|++++||+|++|||+++ +
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 478999999999999999999999998765 55688899999999999999999999999999999999999999985 6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHH-H
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAAL-S 448 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l-~ 448 (574)
+++++++|+++.+..+.+.+.+++++++++... ...........+++++..++++.+.+.++| ++|+++.|+..+ +
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~--~~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEY--EVKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (967)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSS--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 999999999999999999999999887655321 000001112235788899999999999999 999999999865 6
Q ss_pred HHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 449 DPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 449 ~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
.+++.+|+|++..+... +......+..+|..++.+| +|+|+.++++|+.|+
T Consensus 759 ~l~~~~n~Yi~~~k~~~---~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~ 810 (967)
T 1wz2_A 759 SIMNDLRWYLRRTEGRD---DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (967)
T ss_dssp HHHHHHHHHHHHTTTCC---CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhccchh---HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcC
Confidence 99999999998765211 1233345666777777777 899999999999874
No 20
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=4.4e-45 Score=419.14 Aligned_cols=408 Identities=16% Similarity=0.187 Sum_probs=285.2
Q ss_pred CccccccCC-CCceeEEEc--CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHH
Q 008191 85 KRELVKPKV-EGKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPIS 161 (574)
Q Consensus 85 ~~~~f~p~~-~~~v~~y~c--gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e 161 (574)
+...|++.. .++.++|+| .|+|+|.+||||+|+++++|+++||+|++||+|.+++|+|++|.+|+.+|.+.|++|++
T Consensus 40 ~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~ 119 (880)
T 4arc_A 40 EKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAP 119 (880)
T ss_dssp HTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHH
T ss_pred hcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHH
Confidence 344565543 355667766 67888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC--Cccccc--ccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------------C
Q 008191 162 LSRRYCEEFHQDMVDLHCLPPS--VEPRVS--DHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------------E 224 (574)
Q Consensus 162 ~a~~~~~~f~~~l~~L~I~~~d--~~~r~s--~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------------~ 224 (574)
+++++.+.|+++|++||+. .| .+.+++ +|.+.++++|.+|+++|++|++++.||||+.|.. .
T Consensus 120 ~~~~~i~~~~~~l~~LGis-~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~ 198 (880)
T 4arc_A 120 WTYDNIAYMKNQLKMLGFG-YDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWR 198 (880)
T ss_dssp HHHHHHHHHHHHHHHTTCC-CCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC----------------------
T ss_pred HHHHHHHHHHHHHHHhCCC-cCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcC
Confidence 9999999999999999997 45 233333 7999999999999999999999999999987632 2
Q ss_pred ccc-------------cc-----------------------------------------Ccc--c---------------
Q 008191 225 YGQ-------------LS-----------------------------------------GRK--L--------------- 233 (574)
Q Consensus 225 yg~-------------Ls-----------------------------------------~~~--~--------------- 233 (574)
||. ++ +.. +
T Consensus 199 ~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~ 278 (880)
T 4arc_A 199 CDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTY 278 (880)
T ss_dssp --------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCE
T ss_pred CCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeE
Confidence 221 00 000 0
Q ss_pred -----cc-----c-----------------------------------------cCCCcc--------ccCC--------
Q 008191 234 -----ED-----N-----------------------------------------RAGERV--------AVDS-------- 246 (574)
Q Consensus 234 -----~~-----~-----------------------------------------~~g~~v--------~~~~-------- 246 (574)
+. + ..|..+ ..+.
T Consensus 279 vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~ 358 (880)
T 4arc_A 279 LAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAV 358 (880)
T ss_dssp EEECTTCHHHHHHGGGCHHHHHHHTC----------------CEEEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEEEC
T ss_pred EEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccccCcEEecCCCCCEeEEEEeCccccCCCCceEEEc
Confidence 00 0 000000 0000
Q ss_pred CccCccchhhccccc------------------------CC-------------------------------------CC
Q 008191 247 RKKNPADFALWKSAK------------------------EG-------------------------------------EP 265 (574)
Q Consensus 247 ~k~~~~Df~lwk~~~------------------------~g-------------------------------------~~ 265 (574)
..+++.||..++... .| ..
T Consensus 359 Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlr 438 (880)
T 4arc_A 359 PGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLR 438 (880)
T ss_dssp TTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCC
T ss_pred cCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcc
Confidence 011224554432210 00 00
Q ss_pred cc----ccCCcCcCCCCccc-hh-------------------------------------------------------HH
Q 008191 266 FW----ESPWGPGRPGWHIE-CS-------------------------------------------------------AM 285 (574)
Q Consensus 266 ~w----~~~WG~g~PgWhie-cs-------------------------------------------------------am 285 (574)
.| -.-||.+.|-||++ |. ++
T Consensus 439 DW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSsw 518 (880)
T 4arc_A 439 DWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSW 518 (880)
T ss_dssp CEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGT
T ss_pred cceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeeccCCCcceeCCCcCCCcccCcH
Confidence 12 12489999988864 31 00
Q ss_pred -HHhh---------hC-------CCceeeeccccccCccchHHHHH---Hhhc---cC-CCCceEEEEeeEEE-------
Q 008191 286 -SAAY---------LG-------HSFDIHGGGMDLVFPHHENEIAQ---SCAA---CN-NSHISYWIHNGFVT------- 334 (574)
Q Consensus 286 -~~~~---------lG-------~~~dih~~G~Dl~fpH~~~~~A~---~~a~---~~-~~~~~~~~h~g~v~------- 334 (574)
...| +. .|+|++++|+||+..|..+..-. +... .+ .|+.++ +++|||+
T Consensus 519 y~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~l-l~qGmVl~~~~~~~ 597 (880)
T 4arc_A 519 YYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQL-LCQGMVLADAFYYV 597 (880)
T ss_dssp HHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEE-ECCCCEEEEEEEEE
T ss_pred HHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHe-EEeceEeecceecc
Confidence 0000 00 27899999999988887665422 2222 23 355555 7789996
Q ss_pred -eCCc------------------------------------ccccccCceeehhhhhhccChhhHHHHhhcc-CCCCCCC
Q 008191 335 -IDSE------------------------------------KMSKSLGNFFTIRQVMELYHPLALRLFLIGT-HYRSPIN 376 (574)
Q Consensus 335 -~~G~------------------------------------KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~-~~~~~~~ 376 (574)
.+|+ |||||+||+|+|.|++++||+|++|||+++. +++++++
T Consensus 598 d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~ 677 (880)
T 4arc_A 598 GENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLE 677 (880)
T ss_dssp CTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEE
T ss_pred ccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcc
Confidence 2455 9999999999999999999999999999997 9999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 008191 377 YSVVQLESASERIFYIYQTLHDCEKALSLLD-AAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTIN 455 (574)
Q Consensus 377 fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N 455 (574)
||++.++.+.+.+.++++++..+........ ........+++++..++++.+.|.++|+++|+++.|++.|++|++.+|
T Consensus 678 ~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~ 757 (880)
T 4arc_A 678 WQESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLA 757 (880)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 9999999999999999998765432110000 001112335788999999999999999558999999999999999988
Q ss_pred HHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHH
Q 008191 456 DLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLR 502 (574)
Q Consensus 456 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~ 502 (574)
+|... . ......+..++..++.+| +|+|+.+|++|+.|.
T Consensus 758 k~~~~-----~---~~~~~~l~~~l~~ll~LLaPf~PhiaEElW~~Lg 797 (880)
T 4arc_A 758 KAPTD-----G---EQDRALMQEALLAVVRMLNPFTPHICFTLWQELK 797 (880)
T ss_dssp TSCCS-----S---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTT
T ss_pred hhhcc-----c---hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHcC
Confidence 75211 1 111233556677777777 899999999999874
No 21
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=1.8e-47 Score=421.11 Aligned_cols=271 Identities=19% Similarity=0.258 Sum_probs=224.2
Q ss_pred EEEc--CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc--HHH---HHHHHHc--CCCh----------
Q 008191 99 MYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD--DKI---IARANEL--GEDP---------- 159 (574)
Q Consensus 99 ~y~c--gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g--~kI---~~~A~~~--g~~~---------- 159 (574)
.|+| ||||||++||||+|++|++|+++|+|+++|++|.|++++||+| +|| +.+|.++ |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 6888 9999999999999999999999999999999999999999999 999 7778777 9988
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcccccc-cHH-HHHHHHHHHHHCC----------------ceeeecCceeecCCC
Q 008191 160 ISLSRRYCEEFHQDMVDLHCLPPSVEPRVSD-HMP-HIIDMITQILDNG----------------FAYRVDGDVYFSVDK 221 (574)
Q Consensus 160 ~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~-~~~-~i~~~i~~L~~kG----------------~aY~~~~~v~f~~~~ 221 (574)
++++++|.+.|.++|+.|||. +|.+ |+|+ |++ .+++++++|+++| ++|.. + ||++..
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~-~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~~ 175 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIE-VDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAMV 175 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCC-CEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCC-ceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceeccc
Confidence 999999999999999999995 8888 9999 998 8999999999999 55543 2 665432
Q ss_pred -CCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCC-cCcCCCCccchhHHHHhhhCCCceeeec
Q 008191 222 -FPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPW-GPGRPGWHIECSAMSAAYLGHSFDIHGG 299 (574)
Q Consensus 222 -~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~W-G~g~PgWhiecsam~~~~lG~~~dih~~ 299 (574)
|+.||++... +..+. .++.+|.+ ++|++.|+++| |.|+|+||++| +|...++|.. |+++
T Consensus 176 ~~~~~~~~~~~----------~~~~~--~~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~--vd~~ 236 (523)
T 1irx_A 176 YCPEHRREAEI----------IEWDG--GWKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVD--FEPA 236 (523)
T ss_dssp ECTTTCCEECE----------EEECS--SSCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCC--BCCE
T ss_pred cchhhCCcccc----------cccCC--CCceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCC--CcCC
Confidence 4566664321 11111 14457766 56889999999 99999999999 8888889865 4589
Q ss_pred cccccCcc----chHHHHHHhhccCCCCceEEEEeeEEEeC--CcccccccCceeehhhhhhccChhhHHHHhhccCCCC
Q 008191 300 GMDLVFPH----HENEIAQSCAACNNSHISYWIHNGFVTID--SEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRS 373 (574)
Q Consensus 300 G~Dl~fpH----~~~~~A~~~a~~~~~~~~~~~h~g~v~~~--G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~~~~~ 373 (574)
|+||++|| |.++++| .|++.++| +|+|+|||+.+ |+|||||+||+|+++++++.|+||++||||++.++++
T Consensus 237 G~Dh~~~h~s~~~~~~i~~-~alG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~ 313 (523)
T 1irx_A 237 GKDHLVAGSSYDTGKEIIK-EVYGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNK 313 (523)
T ss_dssp EHHHHSTTSHHHHHHHHHH-HHHCCCCC--BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTS
T ss_pred CcCccCCCcchhhHHHHHH-HHhCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCC
Confidence 99999999 8999997 56666555 68999999998 8999999999999999999999999999999999999
Q ss_pred CCCCCHH-HHHHHHHHHHHHHHHH
Q 008191 374 PINYSVV-QLESASERIFYIYQTL 396 (574)
Q Consensus 374 ~~~fs~~-~l~~a~~~l~~l~~~l 396 (574)
+++||++ .+.++.+.+.++++.+
T Consensus 314 ~~~fs~~~~l~~~~~~~~~~~~~~ 337 (523)
T 1irx_A 314 EIKIDLGLGILNLYDEFEKVERIY 337 (523)
T ss_dssp CEEECCSTTHHHHHHHHHHHHHHH
T ss_pred CceeCcchhHHHHHHHHHHHHHHH
Confidence 9999999 8999988888777654
No 22
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=7.3e-44 Score=411.79 Aligned_cols=427 Identities=19% Similarity=0.200 Sum_probs=288.0
Q ss_pred CceeEEEc--CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 95 GKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 95 ~~v~~y~c--gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
++.++|++ .|+|||.+||||+|+++++|+++||+|++||+|.+++|+|+||++|+.+|.+.|++|.+++++|.+.|++
T Consensus 31 ~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~ 110 (878)
T 2v0c_A 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKE 110 (878)
T ss_dssp ---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44455555 4888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCC----cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCC-------------C-cccc------
Q 008191 173 DMVDLHCLPPSV----EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP-------------E-YGQL------ 228 (574)
Q Consensus 173 ~l~~L~I~~~d~----~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~-------------~-yg~L------ 228 (574)
+|++|||. .|+ ++...+|.+.++++|.+|+++|++|++.+.||||+.|.. . ||..
T Consensus 111 ~~~~LGi~-~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~ 189 (878)
T 2v0c_A 111 SLRLMGIL-YDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKREL 189 (878)
T ss_dssp HHHHTTCC-CCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEE
T ss_pred HHHHhCCc-cCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEec
Confidence 99999997 442 233447999999999999999999999999999998631 2 3320
Q ss_pred -------cC---c---ccccc-------------------------cCC-------------------------------
Q 008191 229 -------SG---R---KLEDN-------------------------RAG------------------------------- 239 (574)
Q Consensus 229 -------s~---~---~~~~~-------------------------~~g------------------------------- 239 (574)
+. . .++.. ..|
T Consensus 190 ~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~ 269 (878)
T 2v0c_A 190 EQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTL 269 (878)
T ss_dssp EEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHH
T ss_pred ceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeee
Confidence 00 0 00000 000
Q ss_pred ------------------------------------------------Cc--------cccC--------CCccCccchh
Q 008191 240 ------------------------------------------------ER--------VAVD--------SRKKNPADFA 255 (574)
Q Consensus 240 ------------------------------------------------~~--------v~~~--------~~k~~~~Df~ 255 (574)
.. |..+ ...+++.||.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~ 349 (878)
T 2v0c_A 270 ELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYE 349 (878)
T ss_dssp HHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHH
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHH
Confidence 00 0000 0011223444
Q ss_pred hccccc---------CC----------------------------------------------------CCcc----ccC
Q 008191 256 LWKSAK---------EG----------------------------------------------------EPFW----ESP 270 (574)
Q Consensus 256 lwk~~~---------~g----------------------------------------------------~~~w----~~~ 270 (574)
.++... +| .-.| -.-
T Consensus 350 ~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~ 429 (878)
T 2v0c_A 350 FARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRY 429 (878)
T ss_dssp HHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCS
T ss_pred HHHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccc
Confidence 332210 00 0012 235
Q ss_pred CcCcCCCCccc-hhH-----------------HH---------------------------------------------H
Q 008191 271 WGPGRPGWHIE-CSA-----------------MS---------------------------------------------A 287 (574)
Q Consensus 271 WG~g~PgWhie-csa-----------------m~---------------------------------------------~ 287 (574)
||.+.|-||.+ |.. +. .
T Consensus 430 WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~ 509 (878)
T 2v0c_A 430 WGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYL 509 (878)
T ss_dssp SSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHH
T ss_pred cCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhh
Confidence 99999988752 310 00 0
Q ss_pred hhh--------------C--CCceeeeccccccCccchHH---HHHHhhc---c-CCCCceEEEEeeEEEe---------
Q 008191 288 AYL--------------G--HSFDIHGGGMDLVFPHHENE---IAQSCAA---C-NNSHISYWIHNGFVTI--------- 335 (574)
Q Consensus 288 ~~l--------------G--~~~dih~~G~Dl~fpH~~~~---~A~~~a~---~-~~~~~~~~~h~g~v~~--------- 335 (574)
.|. . .|.|++.+|+|+..-|..+- ...+... . ..|+.++ +.||||+.
T Consensus 510 ~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l-~~~G~vl~~~~~~~~~~ 588 (878)
T 2v0c_A 510 RYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGL-FTQGMVLAWTDFGPVEV 588 (878)
T ss_dssp HTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBE-ECCCCEEEEEEEEEEEE
T ss_pred hccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhh-eecceEeccceeccccc
Confidence 000 0 37899999999876664432 2222222 2 3467777 55799975
Q ss_pred --------------------------------------CC-------cccccccCceeehhhhhhccChhhHHHHhhc-c
Q 008191 336 --------------------------------------DS-------EKMSKSLGNFFTIRQVMELYHPLALRLFLIG-T 369 (574)
Q Consensus 336 --------------------------------------~G-------~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~-~ 369 (574)
+| +|||||+||+|+|.|++++||+|++|||+++ +
T Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~ 668 (878)
T 2v0c_A 589 EGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAA 668 (878)
T ss_dssp ETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHS
T ss_pred cccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccC
Confidence 89 8999999999999999999999999999999 6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhcCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHH
Q 008191 370 HYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLD---AAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAA 446 (574)
Q Consensus 370 ~~~~~~~fs~~~l~~a~~~l~~l~~~l~~~~~~l~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~ 446 (574)
+++++++||++.++.+.+.+.|+++.+......+.... ........+++++..++++.+.+.++| ++|+++.|++.
T Consensus 669 ~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~ 747 (878)
T 2v0c_A 669 PPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA 747 (878)
T ss_dssp CTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH
Confidence 99999999999999999999999998765433221000 011122345789999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHHHHhhh-ccccccHHHHHHHHHHHHHh--------hccccHHHHH
Q 008191 447 LSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL-GLMSTGYSEVLLQLREKALK--------RADLTEDQVL 517 (574)
Q Consensus 447 l~~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~iL-Gi~p~~~~~i~~~l~~~~~~--------~~~~~~~~i~ 517 (574)
|++|++.+|+|.+... .. ..+..+|..++.+| +|+|+.++++|+.|+..... ..-+.++.++
T Consensus 748 l~~f~~~l~k~~~~~~-----~~----~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg~~sv~~~~wP~~d~~~l~~~~~~ 818 (878)
T 2v0c_A 748 LMEFLNALYEYRKDRP-----VT----PVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVE 818 (878)
T ss_dssp HHHHHHHHHHHHHHCC-----SC----HHHHHHHHHHHHHHTTTSHHHHHHHHHHHCSSCGGGSCCCCCCGGGGC-----
T ss_pred HHHHHHHHhhhcccch-----hH----HHHHHHHHHHHHHHcccchHHHHHHHHHcCCCceeecCCCCCCHHHHHHHHHH
Confidence 9999999999965421 01 23456667777777 89999999999988510000 0112345677
Q ss_pred HHHHHHHHHhhhhcHH
Q 008191 518 QRIEDRTVARKNKEYE 533 (574)
Q Consensus 518 ~Li~~R~~AR~~Kdf~ 533 (574)
..++.|...|...+..
T Consensus 819 ~~vqvngkvR~~i~v~ 834 (878)
T 2v0c_A 819 VAVQVNGAVAGTIHIP 834 (878)
T ss_dssp ----------------
T ss_pred HHHhhHHHHHHHcccC
Confidence 7888887777765544
No 23
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=5.3e-45 Score=405.02 Aligned_cols=356 Identities=15% Similarity=0.124 Sum_probs=284.4
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCcccc---------------------------
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD--------------------------- 145 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g--------------------------- 145 (574)
.+++|.|++|||||+|++||||+|++|++|+|+|+|++.||+|.++++++|+|
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 56799999999999999999999999999999999999999999999999954
Q ss_pred ---------------------HHHHHHHHH------cCCC-----hHHHHHHHHHHHHHHHHhcCCCCCCCcccccccH-
Q 008191 146 ---------------------DKIIARANE------LGED-----PISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHM- 192 (574)
Q Consensus 146 ---------------------~kI~~~A~~------~g~~-----~~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s~~~- 192 (574)
++|+.+|++ .|.+ ++++++.+.++|.++|++|||. +|.++++|+|+
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~-fD~~~~ES~~~~ 299 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIK-YDVYSGESQVSK 299 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CSEEEEGGGCCH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ceeecCcchhhh
Confidence 444555665 4665 6899999999999999999997 69999999887
Q ss_pred HHHHHHHHHHHHCCceeeecCceeecCCCCCCccc-ccCcccccccCCCccccCCCccCccch--hhcccccCCCCcccc
Q 008191 193 PHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQ-LSGRKLEDNRAGERVAVDSRKKNPADF--ALWKSAKEGEPFWES 269 (574)
Q Consensus 193 ~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~-Ls~~~~~~~~~g~~v~~~~~k~~~~Df--~lwk~~~~g~~~w~~ 269 (574)
+.|.++++.|.++|++|+.+|.+||+++.+ |+ +.++ +....+|.... .+.|+ ++||..+
T Consensus 300 ~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~---g~~~d~~-v~~KsDG~~~Y------~t~Dia~~~~k~~~-------- 361 (607)
T 1f7u_A 300 ESMLKAIDLFKEKGLTHEDKGAVLIDLTKF---NKKLGKA-IVQKSDGTTLY------LTRDVGAAMDRYEK-------- 361 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEETTEEEEEGGGT---CTTTCEE-EEECTTSCCCH------HHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHhCCCEEEECCcEEEEeccc---CCCCCce-eEeccCCCcCC------CCCcHHHHHHHHhh--------
Confidence 899999999999999999999999998765 43 1100 11112232211 13466 5666421
Q ss_pred CCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEeCCcccccccCceee
Q 008191 270 PWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFT 349 (574)
Q Consensus 270 ~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn~i~ 349 (574)
..++.-++||++|.|+.|++.. +.+.+++. ++.++|+|.+|.+++ |||||+||+|+
T Consensus 362 ------------------~~~d~~IyV~g~~q~~~f~q~~---~~~~~lG~-~~~~~~~Hv~fg~v~--kMSkR~G~~v~ 417 (607)
T 1f7u_A 362 ------------------YHFDKMIYVIASQQDLHAAQFF---EILKQMGF-EWAKDLQHVNFGMVQ--GMSTRKGTVVF 417 (607)
T ss_dssp ------------------HCCSEEEEECCGGGHHHHHHHH---HHHHHTTC-GGGGGEEEECCCCEE--SCCGGGTCCCB
T ss_pred ------------------cCCCcEEEEEcChHhhHHHHHH---HHHHHcCC-CcCcEEEEecccccc--cccCCCCCccc
Confidence 1234467899999998887753 44455554 567789999996665 69999999999
Q ss_pred hhhhhhccCh----------------------------hhHHHHhhccCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHH
Q 008191 350 IRQVMELYHP----------------------------LALRLFLIGTHYRSPINYSVVQLESASERI-FYIYQTLHDCE 400 (574)
Q Consensus 350 ~~d~l~~~~~----------------------------d~lR~~ll~~~~~~~~~fs~~~l~~a~~~l-~~l~~~l~~~~ 400 (574)
++|+++++.. .++||++|+.+++++++|+++.+.++.+.. -+++++..|+.
T Consensus 418 L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~ 497 (607)
T 1f7u_A 418 LDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLR 497 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHH
Confidence 9999998733 489999999999999999999999988755 37888888888
Q ss_pred HHHhhhhh---h--h------cCCCCChhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc-----
Q 008191 401 KALSLLDA---A--A------LKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK----- 464 (574)
Q Consensus 401 ~~l~~~~~---~--~------~~~~~~~~l~~~l~~~~~~~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~----- 464 (574)
+++++... . . ...+.+.+|+..+.++++.+.+++ ++++++.++.+|++|++.+|+||+.++.-
T Consensus 498 SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl~~La~~fn~fY~~~~Vl~~~~~ 576 (607)
T 1f7u_A 498 SVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEE 576 (607)
T ss_dssp HHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHCCSTTSCHH
T ss_pred HHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 88876510 0 0 011223567788889999999999 89999999999999999999999988731
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhccccc
Q 008191 465 KQAMRLESLAALEKTIRNVLTVLGLMST 492 (574)
Q Consensus 465 ~~~~~~~~l~~~~~~l~~~l~iLGi~p~ 492 (574)
....|+.++..+..+|...|.+|||.+.
T Consensus 577 ~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 577 LATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 1246889999999999999999999763
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=7.5e-38 Score=337.12 Aligned_cols=356 Identities=17% Similarity=0.183 Sum_probs=254.6
Q ss_pred CCCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHH-------HHHHH--cCCC-----
Q 008191 93 VEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKII-------ARANE--LGED----- 158 (574)
Q Consensus 93 ~~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~-------~~A~~--~g~~----- 158 (574)
.+++|.+..++|+|.|++||||+|+++++|+++|++++.||+|....+++|+|.+|- .+..+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~ 107 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPE 107 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence 457899999999999999999999999999999999999999999999999998872 22122 1211
Q ss_pred -------h-------------------------HHHHHHHHHHHHHHHHhcCCCCCCCccccc-ccHHHHHHHHHHHHHC
Q 008191 159 -------P-------------------------ISLSRRYCEEFHQDMVDLHCLPPSVEPRVS-DHMPHIIDMITQILDN 205 (574)
Q Consensus 159 -------~-------------------------~e~a~~~~~~f~~~l~~L~I~~~d~~~r~s-~~~~~i~~~i~~L~~k 205 (574)
. +...+...+.|.+++++|||. +|.+...+ -|. .+.++++.|.++
T Consensus 108 ~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~-fD~~~~Ess~~~-~~~~vv~~L~~~ 185 (464)
T 3fnr_A 108 QYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIK-IDSYVSERSYYD-ALNATLESLKEH 185 (464)
T ss_dssp SCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCC-CSCEEEGGGGST-THHHHHHHHHHT
T ss_pred hhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ceeecCHHHHHH-HHHHHHHHHHHC
Confidence 0 112334456789999999997 67766664 344 889999999999
Q ss_pred CceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHH
Q 008191 206 GFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAM 285 (574)
Q Consensus 206 G~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam 285 (574)
|++|+++|.+|++.+.+ |.-... +....+|...... .|.+.-
T Consensus 186 g~~~e~dGa~~~~~~~~---g~~~~~-vl~ksDG~~~Y~t------~DiA~~---------------------------- 227 (464)
T 3fnr_A 186 KGIYEQEGKIWLASSQK---GDEKDR-VIIREDGRGTYLA------ADIVYH---------------------------- 227 (464)
T ss_dssp TCEEEETTEEEECGGGG---TCSSCE-EEECTTSCBCHHH------HHHHHH----------------------------
T ss_pred CCEEEeCCeEEEEeccc---CCCCce-EEEeCCCceehhh------HHHHHH----------------------------
Confidence 99999999999987643 321000 0001122221110 122211
Q ss_pred HHhh-hCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEEe--CCc--ccccccCceeehhhhhhccChh
Q 008191 286 SAAY-LGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI--DSE--KMSKSLGNFFTIRQVMELYHPL 360 (574)
Q Consensus 286 ~~~~-lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~--~G~--KMSKS~Gn~i~~~d~l~~~~~d 360 (574)
..++ .|....|++.|.|+. -|.....+.+.+++..++.-..+++|||++ +|+ |||||+||+|+|+|+++++|+|
T Consensus 228 ~~r~~~~~d~~Iyv~G~dq~-~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~d 306 (464)
T 3fnr_A 228 KDKMSRGYGKCINIWGADHH-GYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSD 306 (464)
T ss_dssp HHHHTSSCSEEEEEEEGGGG-GGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHH
T ss_pred HHHHHcCCCeEEEEecCcHH-HHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHH
Confidence 1111 133455888999976 243344455556655443223467899976 785 9999999999999999999999
Q ss_pred hHHHHhhccCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhh---------cCCCCChhHHHHHHHHHHH
Q 008191 361 ALRLFLIGTHYRSPINYSVVQLESASER--IFYIYQTLHDCEKALSLLDAAA---------LKDSIPPDTVTSINKFHND 429 (574)
Q Consensus 361 ~lR~~ll~~~~~~~~~fs~~~l~~a~~~--l~~l~~~l~~~~~~l~~~~~~~---------~~~~~~~~l~~~l~~~~~~ 429 (574)
++|||+++.+++++++|+++.+.+..+. ..++.++..++...+.+....+ ...+.+.+++..+.++++.
T Consensus 307 alRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~~ 386 (464)
T 3fnr_A 307 ALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKAV 386 (464)
T ss_dssp HHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999776431 1244455666666655532110 0111156788889999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhcc--h---hhhhHHHHHHHHHHHHHHHhhhccccc
Q 008191 430 FLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGK--K---QAMRLESLAALEKTIRNVLTVLGLMST 492 (574)
Q Consensus 430 ~~~am~dd~n~~~al~~l~~l~~~~N~~~~~~~~~--~---~~~~~~~l~~~~~~l~~~l~iLGi~p~ 492 (574)
+.+++ ++++++.++.+|++|++.+|+|++.++.. + ...|+.++.++ +|.+.|.+|||.+.
T Consensus 387 v~~a~-~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 387 LNDAF-EARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHH-HHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCC
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCch
Confidence 99999 99999999999999999999999988732 1 34577777777 99999999999864
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.97 E-value=5e-33 Score=300.99 Aligned_cols=251 Identities=18% Similarity=0.180 Sum_probs=187.0
Q ss_pred cCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 102 cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
-.|+|||++||||+|++++.+.++| +|.+.++..+||.|++ +. ...|.+.|.++|+.||+.
T Consensus 101 FaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~------R~-------~~e~~~~I~edL~wLGl~- 161 (553)
T 3aii_A 101 FAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR------RV-------DPEAYDMIPADLEWLGVE- 161 (553)
T ss_dssp ECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG------GC-------CTTHHHHHHHHHHHHTCC-
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc------cc-------cHHHHHHHHHHHHHcCCC-
Confidence 3799999999999999998555554 6889999999999976 11 448899999999999997
Q ss_pred CCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC----CC------CcccccCc-cc---ccccCCC------c
Q 008191 182 PSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK----FP------EYGQLSGR-KL---EDNRAGE------R 241 (574)
Q Consensus 182 ~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~----~~------~yg~Ls~~-~~---~~~~~g~------~ 241 (574)
+|..+++|+|++.+++++++|+++|+||. +||+.. .. .|..++.. .+ +++..|. +
T Consensus 162 wd~~~~qSdr~~~y~~~~~~Li~~G~AY~-----c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR 236 (553)
T 3aii_A 162 WDETVIQSDRMETYYEYTEKLIERGGAYV-----CTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVR 236 (553)
T ss_dssp CSEEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEE
T ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcee-----CCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEE
Confidence 57889999999999999999999999996 444432 11 13233321 01 1344553 2
Q ss_pred cccC--CCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCc---cchHHHHHH-
Q 008191 242 VAVD--SRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP---HHENEIAQS- 315 (574)
Q Consensus 242 v~~~--~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fp---H~~~~~A~~- 315 (574)
+..+ ....++.||++|+....++|.|-..|. ++|+||++|+ +|.|.+|+++++. |+.+.++|.
T Consensus 237 ~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~-g~PtYhfa~~----------vDD~~~GIThviRG~D~~~nt~~Q~~ 305 (553)
T 3aii_A 237 VKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYR-VYPMMNFSVA----------VDDHLLGVTHVLRGKDHLANREKQEY 305 (553)
T ss_dssp ECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCC-EEECHHHHHH----------HHHHHTTCCEEEC-----CHHHHHHH
T ss_pred EEcccccCCCCCCCcEEEEecCCCCCccCCCce-eeeeeeeeee----------eeeccCCCceEeccHhhhhCHHHHHH
Confidence 2222 223467899999987666665433332 6999999994 5678889999988 999999998
Q ss_pred -hhccCCCCceEEEEeeEEEeCCcccccccCc---------------eeehhhhhhc-cChhhHHHHhhccCC-CCCCCC
Q 008191 316 -CAACNNSHISYWIHNGFVTIDSEKMSKSLGN---------------FFTIRQVMEL-YHPLALRLFLIGTHY-RSPINY 377 (574)
Q Consensus 316 -~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~d~l~~-~~~d~lR~~ll~~~~-~~~~~f 377 (574)
.++.+.++++|| |+++|+++|+|||||+|| +.|+.++.+. |.|++||.|+++.++ +++.+|
T Consensus 306 l~~alG~~~P~y~-H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~ 384 (553)
T 3aii_A 306 LYRHLGWEPPEFI-HYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTM 384 (553)
T ss_dssp HHHHHTCCCCEEE-CCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCC
T ss_pred HHHHcCCCCCeEE-EeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccc
Confidence 344455567786 999999999999999998 7889999975 999999999999888 799999
Q ss_pred CHHHHHHHHHH
Q 008191 378 SVVQLESASER 388 (574)
Q Consensus 378 s~~~l~~a~~~ 388 (574)
+++.|..+.+.
T Consensus 385 s~~~L~~~~r~ 395 (553)
T 3aii_A 385 SWKKIYGLNRS 395 (553)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999888764
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.97 E-value=1.3e-31 Score=289.91 Aligned_cols=251 Identities=19% Similarity=0.154 Sum_probs=200.8
Q ss_pred cCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 102 CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 102 cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
.+|+|||++||||||++++.+.++| +|...|+..+||.|+. ..+..|.+.|.++|+.||+..
T Consensus 31 FaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-------------R~~~e~~~~I~edL~wLGl~w 92 (553)
T 1qtq_A 31 FPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEWLGFHW 92 (553)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTTCCC
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-------------hcCHHHHHHHHHHHHHcCCCC
Confidence 4899999999999999998777766 5788999999999962 135689999999999999987
Q ss_pred CCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------CCCccccc---Cccc-------ccccCCC---
Q 008191 182 PSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------FPEYGQLS---GRKL-------EDNRAGE--- 240 (574)
Q Consensus 182 ~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------~~~yg~Ls---~~~~-------~~~~~g~--- 240 (574)
++..+++|+|++.+.+++++|+++|+||. +||+.. ...+|..+ .+.. +++..|+
T Consensus 93 de~~~~qSer~~~~~~~a~~Li~~G~AY~-----c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~ 167 (553)
T 1qtq_A 93 SGNVRYSSDYFDQLHAYAIELINKGLAYV-----DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEE 167 (553)
T ss_dssp SSSCEEGGGGHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred CCCCeehcccHHHHHHHHHHHHHCCCcee-----cCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccC
Confidence 78889999999999999999999999996 344321 11233322 1112 2344554
Q ss_pred -----c--cccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccC---ccchH
Q 008191 241 -----R--VAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF---PHHEN 310 (574)
Q Consensus 241 -----~--v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~f---pH~~~ 310 (574)
+ +++...+.++.||++||..+++++.|..+| .++|+||++|+ +|.|.+|++|++ +|+.|
T Consensus 168 g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~v----------vDDh~~GITHviRg~e~~~n 236 (553)
T 1qtq_A 168 GKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHC----------ISDALEGITHSLCTLEFQDN 236 (553)
T ss_dssp TSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHTTCSEEEEEGGGTTT
T ss_pred CceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccE----------EEeccCCcceEeeccchhhh
Confidence 2 233445677889999998888889999999 78999998773 688999999999 99999
Q ss_pred HHHHH---hhccCCCCceEEEEeeEEEeCCcccccccCc---------------eeehhhhhhc-cChhhHHHHhhccCC
Q 008191 311 EIAQS---CAACNNSHISYWIHNGFVTIDSEKMSKSLGN---------------FFTIRQVMEL-YHPLALRLFLIGTHY 371 (574)
Q Consensus 311 ~~A~~---~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~d~l~~-~~~d~lR~~ll~~~~ 371 (574)
.++|. .|++...++++| |+++|.++|+|||||+|| ++|+.++.+. |.|++||.|+++.++
T Consensus 237 ~~~q~~l~~alg~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~ 315 (553)
T 1qtq_A 237 RRLYDWVLDNITIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGV 315 (553)
T ss_dssp HHHHHHHHHTSCCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCC
Confidence 99998 566544356787 789999999999999997 7899999965 999999999999888
Q ss_pred CCCCC-CCHHHHHHHHH
Q 008191 372 RSPIN-YSVVQLESASE 387 (574)
Q Consensus 372 ~~~~~-fs~~~l~~a~~ 387 (574)
....+ +++..+++..+
T Consensus 316 s~~~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 316 TKQDNTIEMASLESCIR 332 (553)
T ss_dssp CSSCCCBCHHHHHHHHH
T ss_pred CCCccccchhhHHHHHH
Confidence 76555 68887777544
No 27
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.97 E-value=5.1e-31 Score=296.46 Aligned_cols=259 Identities=17% Similarity=0.130 Sum_probs=203.0
Q ss_pred CCceeEEEc--CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008191 94 EGKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFH 171 (574)
Q Consensus 94 ~~~v~~y~c--gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~ 171 (574)
+++++.++| +|+|||++||||+|++++.+.++| +|.+.|+..+||.|++ + -...|.+.|.
T Consensus 61 ~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R----------~~~e~~~~Il 122 (851)
T 2hz7_A 61 AGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE---L----------ARQEYVDSIA 122 (851)
T ss_dssp TTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT---T----------CCHHHHHHHH
T ss_pred cCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---c----------ccHHHHHHHH
Confidence 456666777 999999999999999998666665 5888999999999975 1 1568999999
Q ss_pred HHHHhcCCCCCCCcccccccHHHHHHHHHHHHHCCceeeecCceeecCCC--------CCCcccccC-c--cc-------
Q 008191 172 QDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK--------FPEYGQLSG-R--KL------- 233 (574)
Q Consensus 172 ~~l~~L~I~~~d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~--------~~~yg~Ls~-~--~~------- 233 (574)
++|+.||+..++..++.|+|++.+++++++|+++|+||. +||+.. +..+|..+. + ..
T Consensus 123 edL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~-----c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~f 197 (851)
T 2hz7_A 123 DDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV-----ESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLL 197 (851)
T ss_dssp HHHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHH
T ss_pred HHHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe-----ecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHH
Confidence 999999998768889999999999999999999999996 344321 122333321 1 11
Q ss_pred ccccCCC--------c--cccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccc
Q 008191 234 EDNRAGE--------R--VAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDL 303 (574)
Q Consensus 234 ~~~~~g~--------~--v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl 303 (574)
+++..|+ + +++...+.++.||++|+..+.+++.|.++| .++|+||++|+ +|.|.+|++|
T Consensus 198 e~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~v----------VDD~~~GITH 266 (851)
T 2hz7_A 198 RRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHP----------LQDAIEGVTH 266 (851)
T ss_dssp HHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHHTCSE
T ss_pred HHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeE----------eeeccCCcce
Confidence 3344555 2 233445667889999999888889999999 78999999996 4678888888
Q ss_pred cCc---cchHHHHHH---hhccCCCCceEEEEeeEEEeCCcccccccCc---------------eeehhhhhhc-cChhh
Q 008191 304 VFP---HHENEIAQS---CAACNNSHISYWIHNGFVTIDSEKMSKSLGN---------------FFTIRQVMEL-YHPLA 361 (574)
Q Consensus 304 ~fp---H~~~~~A~~---~a~~~~~~~~~~~h~g~v~~~G~KMSKS~Gn---------------~i~~~d~l~~-~~~d~ 361 (574)
++. |+.|.++|. .|++....+++| |+++|.++|.|||||+|| ++|+.++.+. |.|++
T Consensus 267 ViRG~D~~~n~~~q~~l~~alG~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeA 345 (851)
T 2hz7_A 267 SMCSLEFVDNRAIYDWLMEKLNFDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEA 345 (851)
T ss_dssp EEEEGGGTTTHHHHHHHHHHTTCSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHH
T ss_pred eecchhhhhChHHHHHHHHHcCCCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHH
Confidence 887 899999987 666443326676 789999999999999987 6789999865 99999
Q ss_pred HHHHhhccCCCCC-CCCCHHHHHHHHH
Q 008191 362 LRLFLIGTHYRSP-INYSVVQLESASE 387 (574)
Q Consensus 362 lR~~ll~~~~~~~-~~fs~~~l~~a~~ 387 (574)
||.|+++.+|... ..+++..++....
T Consensus 346 Ir~fl~~lG~s~~~~~~e~~~le~~~r 372 (851)
T 2hz7_A 346 VRAFAAQIGVSRTNRTVDIAVYENAVR 372 (851)
T ss_dssp HHHHHHHSCCCSSCEEECHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcccccHHHHHHHHH
Confidence 9999999988644 3478777775543
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.93 E-value=1.1e-26 Score=251.31 Aligned_cols=238 Identities=19% Similarity=0.197 Sum_probs=177.0
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|+++.. ||.++++.+.|+..|+|.|.. .. ...|.+.|.++|+.|||..+
T Consensus 7 APSPtG~lHiG~artal~n-----~l~Ar~~~G~filRieDtD~~---------R~----~~~~~~~i~~dL~wLGl~wd 68 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFN-----WLYARHRGGKFILRIEDTDRE---------RS----RPEYTENILEGLQWLGLTWD 68 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHH-----HHHHHHTTCEEEEEECCCSSS---------SC----CHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHH-----HHHHHhcCCeEEEEEeeCCcc---------cc----chHHHHHHHHHHHHcCCCCC
Confidence 6999999999999999885 555556889999999999851 11 25788999999999999744
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeeecCceeecCC-----------------CCC-CcccccCcc-cccccCCC---
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVD-----------------KFP-EYGQLSGRK-LEDNRAGE--- 240 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~-----------------~~~-~yg~Ls~~~-~~~~~~g~--- 240 (574)
...++.|++++..++++++|+++|+||. +||+. .++ .|+.++... .+.+..|.
T Consensus 69 e~~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~ 143 (492)
T 2cfo_A 69 EGPYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPV 143 (492)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCE
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCceE-----ecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCce
Confidence 4478999999999999999999999995 44433 122 255555421 11122333
Q ss_pred -ccccC----------------CCccCc-cchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeecccc
Q 008191 241 -RVAVD----------------SRKKNP-ADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMD 302 (574)
Q Consensus 241 -~v~~~----------------~~k~~~-~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~D 302 (574)
++.++ ..+.++ .||++||..+ +| |.|+|+||++|+ +|.|.+|++
T Consensus 144 iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~v----------vDD~~~gIt 205 (492)
T 2cfo_A 144 IRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVV----------VDDIAMGIT 205 (492)
T ss_dssp EEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHH----------HHHHHTTCS
T ss_pred EEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CC-CCCceeehhhhh----------hhhhcCCCC
Confidence 11111 123456 7999998743 46 689999999986 678889999
Q ss_pred ccCc---cchHHHHHHh---hccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhh-ccChhhHHHHhhccCCCC-
Q 008191 303 LVFP---HHENEIAQSC---AACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYRS- 373 (574)
Q Consensus 303 l~fp---H~~~~~A~~~---a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~~- 373 (574)
+++. |+.|.+.|.. +++.++ + .|.|.+++ ..+|+|||||.||+ ++.++.+ .|.|++||.|++...+..
T Consensus 206 hviRG~D~~~~t~~q~~l~~alg~~~-P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~~ 282 (492)
T 2cfo_A 206 DVIRGEDHIGNTPKQILLYEALGATP-P-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSPP 282 (492)
T ss_dssp EEEEEGGGTTHHHHHHHHHHHTTCCC-C-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCCC
T ss_pred eEEEchhhhhCHHHHHHHHHHcCCCC-c-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 9988 9999998875 554443 3 67899995 57999999999996 8999886 599999999999864432
Q ss_pred ---CCCCCHHHHHH
Q 008191 374 ---PINYSVVQLES 384 (574)
Q Consensus 374 ---~~~fs~~~l~~ 384 (574)
.--|+.+.+.+
T Consensus 283 ~~~~e~~~~~e~i~ 296 (492)
T 2cfo_A 283 EGVGELFTLDLAAK 296 (492)
T ss_dssp TTTCSCCCHHHHHH
T ss_pred CccccccCHHHHHh
Confidence 33467666644
No 29
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.92 E-value=2.3e-25 Score=226.88 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=144.6
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|||++||||+|+++ .+|+.++++.+.|+..++|.|++ + -...|.+.|.++|+.|||..+
T Consensus 11 APsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~---R----------~~~~~~~~I~~dL~~LGl~~D 72 (298)
T 1nzj_A 11 APSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP---R----------EVPGAAETILRQLEHYGLHWD 72 (298)
T ss_dssp CCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG---G----------SCTTHHHHHHHHHHHTTCCCS
T ss_pred CcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch---h----------hHHHHHHHHHHHHHHcCCCCC
Confidence 59999999999999998 66666667889999999999976 1 115788999999999999854
Q ss_pred CCcccccccHHHHHHHHHHHHHCCceeee---------cCceeecCCCC-CCccccc---------CcccccccCCCccc
Q 008191 183 SVEPRVSDHMPHIIDMITQILDNGFAYRV---------DGDVYFSVDKF-PEYGQLS---------GRKLEDNRAGERVA 243 (574)
Q Consensus 183 d~~~r~s~~~~~i~~~i~~L~~kG~aY~~---------~~~v~f~~~~~-~~yg~Ls---------~~~~~~~~~g~~v~ 243 (574)
...++.|++.+.+++++++|+++|++|.- .+.+|+++-.. +.+|+.+ ....+++..|. +.
T Consensus 73 ~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~-~~ 151 (298)
T 1nzj_A 73 GDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGI-IH 151 (298)
T ss_dssp SCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEE-EE
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcc-cc
Confidence 45789999999999999999999999974 34567665332 3455433 11123333333 22
Q ss_pred cCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHHHHHh--hccCC
Q 008191 244 VDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC--AACNN 321 (574)
Q Consensus 244 ~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~--a~~~~ 321 (574)
.+ .+.++.||++||. .|+|+||++|+. .....|.+.+|| |.|+ +.|.+.|.. .+.+.
T Consensus 152 ~~-~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D~----l~~t~~q~~l~~alG~ 210 (298)
T 1nzj_A 152 AD-EKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GADL----IEPTVRQISLYQLFGW 210 (298)
T ss_dssp CC-HHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGGG----HHHHHHHHHHHHHHTC
T ss_pred cC-cccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Cccc----cccHHHHHHHHHHcCC
Confidence 11 2345679999985 479999999987 566789999999 8994 588888876 33355
Q ss_pred CCceEEEEeeEE-EeCCcccccccCceeehhhh
Q 008191 322 SHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQV 353 (574)
Q Consensus 322 ~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~ 353 (574)
++++| +|.+++ ..+|+|||||.||+ ++++.
T Consensus 211 ~~p~~-~H~pll~~~~g~KLSKR~g~~-~v~~~ 241 (298)
T 1nzj_A 211 KVPDY-IHLPLALNPQGAKLSKQNHAP-ALPKG 241 (298)
T ss_dssp CCCEE-EEECBCCC--------------CCCSS
T ss_pred CCCeE-EEeeeeECCCCCcccccCCcc-ChhcC
Confidence 55667 799997 67999999999997 55443
No 30
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.75 E-value=1.6e-17 Score=179.67 Aligned_cols=231 Identities=19% Similarity=0.223 Sum_probs=152.6
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
..|.+.-++|+|+|++||||+|++++.|+++|. ..|. ++.-++|.|. ......+.+.+.++|
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~---~iLRieDtD~-------------~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGK---FILRIEDTDL-------------ERSEREYEEKLMESL 72 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCE---EEECBCCSSC-------------CSGGGHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCe---EEEEEecCCc-------------cccHHHHHHHHHHHH
Confidence 356778889999999999999999999999998 5674 5556778772 122346778889999
Q ss_pred HhcCCCCCCCc---------ccccccHHHHHHHHHHHHHCCceeeecCceeecCCCC--------------CCc-ccccC
Q 008191 175 VDLHCLPPSVE---------PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF--------------PEY-GQLSG 230 (574)
Q Consensus 175 ~~L~I~~~d~~---------~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~--------------~~y-g~Ls~ 230 (574)
+.||+. +|-. .+.|++.+..++++++|+++|.+|.. ||.... +.| |..+.
T Consensus 73 ~wlGl~-~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c-----~ct~eel~~~r~~~~~~g~~~~yd~~~s~ 146 (481)
T 2o5r_A 73 RWLGLL-WDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYV-----YAYPEEIEEMREKLLSEGKAPHYSQEMFE 146 (481)
T ss_dssp HHHTCC-CSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEEE-----CCCSTTTHHHHHHHHHTTCCCCBCGGGGT
T ss_pred HHcCCC-CCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeEe-----cCCHHHHHHHHHHHHhcCCCCCCCCchhh
Confidence 999996 4543 46789999999999999999999953 222210 011 00111
Q ss_pred cccc------cccCCCc-----------ccc--------CCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHH
Q 008191 231 RKLE------DNRAGER-----------VAV--------DSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAM 285 (574)
Q Consensus 231 ~~~~------~~~~g~~-----------v~~--------~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam 285 (574)
+.+. .+..|.. +.. .....+..||++||. .|.|.||++|+.
T Consensus 147 r~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------------DG~ptY~~a~vv- 212 (481)
T 2o5r_A 147 KFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRS-------------NGLPTYNFACVV- 212 (481)
T ss_dssp TTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECT-------------TSCBCHHHHHHH-
T ss_pred hcCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEcc-------------CCCcchhhHHHH-
Confidence 1110 0011210 000 001122346666664 388999998862
Q ss_pred HHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhh-ccChhhHH
Q 008191 286 SAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVME-LYHPLALR 363 (574)
Q Consensus 286 ~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR 363 (574)
.....|.+ .-+.|.|+. .|....+++..+++.++| . |.|..++ ..+|+||||+.|++ +++++++ .|.|++++
T Consensus 213 DD~~~git--hvirG~D~~-~~t~~q~~l~~aLG~~~p-~-~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~ 286 (481)
T 2o5r_A 213 DDMLMEIT--HVIRGDDHL-SNTLRQLALYEAFEKAPP-V-FAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALV 286 (481)
T ss_dssp HHHHTTCS--EEEEEGGGH-HHHHHHHHHHHHTTCCCC-E-EEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHH
T ss_pred HHHhCCCC--eEEEChhHH-HhHHHHHHHHHHcCCCCC-e-EEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHH
Confidence 23344543 335899965 555556666677776654 3 6888885 45899999999998 8999987 57888877
Q ss_pred HHhhcc
Q 008191 364 LFLIGT 369 (574)
Q Consensus 364 ~~ll~~ 369 (574)
.|+...
T Consensus 287 ~~l~~l 292 (481)
T 2o5r_A 287 NYLALL 292 (481)
T ss_dssp HHHHTS
T ss_pred HHHHHh
Confidence 777664
No 31
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.70 E-value=1.5e-16 Score=175.58 Aligned_cols=234 Identities=18% Similarity=0.166 Sum_probs=152.3
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
++|..=.. |+|+|++||||+|+++..+.++|. |.-.|+.-++|.|.. .-...+.+.+.++|
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~-----~~G~~ilRieDtD~~-------------r~~~~~~~~I~~dL 188 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESL 188 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCSS-------------SCCHHHHHHHHHHH
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh-----cCCcEEEEecCcChh-------------hccHHHHHHHHHHH
Confidence 34555555 999999999999999999999986 445577888887621 22457788999999
Q ss_pred HhcCCCCCCCc---------ccccccHHHHHHHHHHHHHCCceeeec----------CceeecCCCCCCccc---c----
Q 008191 175 VDLHCLPPSVE---------PRVSDHMPHIIDMITQILDNGFAYRVD----------GDVYFSVDKFPEYGQ---L---- 228 (574)
Q Consensus 175 ~~L~I~~~d~~---------~r~s~~~~~i~~~i~~L~~kG~aY~~~----------~~v~f~~~~~~~yg~---L---- 228 (574)
+.|||. +|.- .+.|++.+...+++++|+++|++|.-. ...|.........|+ +
T Consensus 189 ~wlGl~-~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~ 267 (592)
T 3al0_C 189 RWCGLD-WDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKV 267 (592)
T ss_dssp HHTTCC-CSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECC
T ss_pred HHcCCC-CCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEEC
Confidence 999996 6654 378999999999999999999999621 111111100000111 0
Q ss_pred c--CcccccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCc
Q 008191 229 S--GRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 306 (574)
Q Consensus 229 s--~~~~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fp 306 (574)
. .....++..|.- .....+..||++||. .|.|.||++|+. .....|.+..| -|.|++ +
T Consensus 268 ~~~~~~~~D~v~G~~---~~~~~~~~D~Vl~R~-------------dg~ptY~~a~vv-DD~~~githvi--rG~D~~-~ 327 (592)
T 3al0_C 268 LPGKTSFEDLLKGYM---EFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMRISHVF--RGEDHL-S 327 (592)
T ss_dssp CSSCCEECCTTTCSE---ECCSSSSCCEEEECT-------------TSCCCHHHHHHH-HHHHTTCSBCC--EEGGGG-G
T ss_pred CCCCceeeeccccee---eeccccCCCeEEEcC-------------CCCeehhhHHHH-HHHhcCCCeEE--EchhhH-h
Confidence 0 001111112211 111223458888875 388999988853 23344544333 478843 2
Q ss_pred cchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhh-ccChhhHHHHhhccCC
Q 008191 307 HHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHY 371 (574)
Q Consensus 307 H~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~ 371 (574)
|....+++..+++..+| .| .|..++ ..+|.|||||.|+ +++.++.+ .|.|+++|.|++...+
T Consensus 328 ~t~~q~~l~~alg~~~P-~~-~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 328 NTPKQLMIYEAFGWEAP-VF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 391 (592)
T ss_dssp GHHHHHHHHTTTTCCCC-BC-CEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTB
T ss_pred CHHHHHHHHHHhCCCCC-eE-EEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 33333344456655543 34 677776 4589999999999 68999987 5999999999988543
No 32
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.65 E-value=8e-16 Score=165.54 Aligned_cols=239 Identities=17% Similarity=0.166 Sum_probs=158.6
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|+++....++|. +.-.|+.-|+|.|.. . -...+.+.+.++|+.||+. +
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~---------R----~~~~~~~~I~~dl~wlGl~-w 67 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARR-----NGGRFIVRIEDTDRA---------R----YVPGAEERILAALKWLGLS-Y 67 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH-----TTCEEEECBCCCCTT---------S----CCTTHHHHHHHHHHHTTCC-C
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEeCcCCCc---------c----cChHHHHHHHHHHHHcCCC-C
Confidence 5999999999999999988888774 445799999999853 1 1346788999999999997 5
Q ss_pred CCc---------ccccccHHHHHHHHHHHHHCCceeeecC--ce---------eecCCCCCCcccccCccc-ccccCCCc
Q 008191 183 SVE---------PRVSDHMPHIIDMITQILDNGFAYRVDG--DV---------YFSVDKFPEYGQLSGRKL-EDNRAGER 241 (574)
Q Consensus 183 d~~---------~r~s~~~~~i~~~i~~L~~kG~aY~~~~--~v---------~f~~~~~~~yg~Ls~~~~-~~~~~g~~ 241 (574)
|-. .+.|++.+...+++++|+++|++|.-.- .. -|+ ..|..++.... ..+..|..
T Consensus 68 d~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~----~~cr~l~~~e~~~~~~~g~~ 143 (468)
T 1j09_A 68 DEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYD----GRARNIPPEEAEERARRGEP 143 (468)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCC----CGGGGSCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCC----CcccCCCHHHHHHHHhcCCC
Confidence 655 4889999999999999999999995310 00 111 11333332100 00111211
Q ss_pred ------------cc--------cCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccc
Q 008191 242 ------------VA--------VDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301 (574)
Q Consensus 242 ------------v~--------~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~ 301 (574)
+. +.....+..||++||. .|.|.||++|+. .....|.+.. +-|.
T Consensus 144 ~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~-------------dg~PtY~~a~vv-DD~~~githv--irG~ 207 (468)
T 1j09_A 144 HVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS-------------DGYPTYHLANVV-DDHLMGVTDV--IRAE 207 (468)
T ss_dssp CEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEE--EEEG
T ss_pred ceEEEecCCCCceEEEeccceeEeecccCCCCeEEEec-------------CCCeeehhHHHH-HHHHCCCCeE--EECh
Confidence 00 0011122357777764 378999998854 2334554433 3488
Q ss_pred cccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhh-ccChhhHHHHhhccCCCC---CCC
Q 008191 302 DLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYRS---PIN 376 (574)
Q Consensus 302 Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~~---~~~ 376 (574)
|+. .|.....++..+++..+| . |.|..++ ..+|+|||||.|++ ++.++.+ .|.|+++|-|++...+.. .-.
T Consensus 208 D~~-~~t~~q~~l~~alg~~~p-~-~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~ 283 (468)
T 1j09_A 208 EWL-VSTPIHVLLYRAFGWEAP-R-FYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPDGREI 283 (468)
T ss_dssp GGG-GGHHHHHHHHHHHTCCCC-E-EEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSC
T ss_pred hhh-hhHHHHHHHHHHcCCCCC-e-EEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCcccccC
Confidence 853 334444455566765544 3 4787775 56899999999998 8888886 599999999998854432 245
Q ss_pred CCHHHHHH
Q 008191 377 YSVVQLES 384 (574)
Q Consensus 377 fs~~~l~~ 384 (574)
|+.+.+.+
T Consensus 284 ~~~~el~~ 291 (468)
T 1j09_A 284 FTLEEFIQ 291 (468)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHh
Confidence 88766544
No 33
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.65 E-value=1.5e-15 Score=164.15 Aligned_cols=233 Identities=18% Similarity=0.161 Sum_probs=152.9
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|+++....++|- +...++.-|+|.|.. .-...+.+.+.++|+.|||. +
T Consensus 31 APsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~-w 91 (488)
T 3afh_A 31 APSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDTE-------------RSSREYEQQILESLRWCGLD-W 91 (488)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCTT-------------TCCHHHHHHHHHHHHHTTCC-C
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCCcc-------------cccHHHHHHHHHHHHHcCCC-C
Confidence 5999999999999999988877775 456789999999853 12447788999999999996 6
Q ss_pred CCc---------ccccccHHHHHHHHHHHHHCCceeeec----------CceeecCCCCC--Cccc-------cc--Ccc
Q 008191 183 SVE---------PRVSDHMPHIIDMITQILDNGFAYRVD----------GDVYFSVDKFP--EYGQ-------LS--GRK 232 (574)
Q Consensus 183 d~~---------~r~s~~~~~i~~~i~~L~~kG~aY~~~----------~~v~f~~~~~~--~yg~-------Ls--~~~ 232 (574)
|.- .+.|++.+...+++++|+++|++|.-. ...|-.. +. ..|+ +. ...
T Consensus 92 De~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~--~~~~~~G~~~~iR~k~~~~~~~ 169 (488)
T 3afh_A 92 DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP--HEYKEKGHPVTIKFKVLPGKTS 169 (488)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC--HHHHHTTCCEEEEECCCSSEEE
T ss_pred CcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCch--hhHHhcCCCceEEEECCCCcee
Confidence 654 388999999999999999999999621 0111111 00 0010 00 000
Q ss_pred cccccCCCccccCCCccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccccCccchHHH
Q 008191 233 LEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI 312 (574)
Q Consensus 233 ~~~~~~g~~v~~~~~k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~ 312 (574)
..++..|. +.....+..||+++|. .|.|.||++|+. .....|.+-.| -|.|+ +.|.+
T Consensus 170 ~~D~v~G~---~~~~~~~~~D~Vl~R~-------------DG~PtY~lA~vV-DD~~mgIThVi--RG~D~----l~~tp 226 (488)
T 3afh_A 170 FEDLLKGY---MEFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMRISHVF--RGEDH----LSNTP 226 (488)
T ss_dssp EEETTTEE---EEEEGGGSCCEEEECT-------------TSCBCHHHHHHH-HHHHTTCSEEE--EEGGG----GGGHH
T ss_pred EEecccee---EeecCCCCCCeEEEec-------------CCCeehhhHHHH-HHHhcCCCEEE--Echhh----hhCHH
Confidence 01111111 0001122347777775 378999988763 23345554443 48884 55555
Q ss_pred HH---HhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhh-ccChhhHHHHhhccCCCC--CCCCCHHHH
Q 008191 313 AQ---SCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHYRS--PINYSVVQL 382 (574)
Q Consensus 313 A~---~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~~~--~~~fs~~~l 382 (574)
.| ..+++.++| .|.|..+++ .+|+|||||.|+ +++.++.+ .|.|++++.|++...+.. +--|+.+.+
T Consensus 227 ~q~~l~~aLG~~~P--~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e~ 300 (488)
T 3afh_A 227 KQLMIYEAFGWEAP--VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEK 300 (488)
T ss_dssp HHHHHHHHHTCCCC--EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHHH
T ss_pred HHHHHHHHcCCCCC--eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHH
Confidence 44 456665554 347878774 589999999999 68999887 599999999998854432 134555544
No 34
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.61 E-value=1.2e-14 Score=156.26 Aligned_cols=239 Identities=19% Similarity=0.207 Sum_probs=149.4
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|+|+|++||||+|+++..++++|. +...|+..++|.|.+ .....|.+.|.++|+.|||. +
T Consensus 31 APSPTG~lHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~-------------R~~~~~~~~i~~dl~wlGl~-~ 91 (490)
T 4g6z_A 31 APSPTGFIHLGNIRSALYPWAFARK-----MKGTFVLRIEDTDVE-------------RSSQEAVDAILEGMAWLGLD-Y 91 (490)
T ss_dssp CCCCCSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHTTCC-C
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCcc-------------cccHHHHHHHHHHHHHcCCC-C
Confidence 4999999999999999987777764 667899999999862 11357899999999999997 4
Q ss_pred CC-cccccccHHHHHHHHHHHHHCCceeeecCceeecCCCC--------------C----CcccccCcccccccCCCcc-
Q 008191 183 SV-EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF--------------P----EYGQLSGRKLEDNRAGERV- 242 (574)
Q Consensus 183 d~-~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~--------------~----~yg~Ls~~~~~~~~~g~~v- 242 (574)
|. ..+.|+|++..++++++|+++|++|.- ||.... + .|-.++.........|...
T Consensus 92 d~~~~~qS~r~~~y~~~~~~Li~~G~aY~C-----~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~ 166 (490)
T 4g6z_A 92 DEGPYYQMQRMDRYREVLAQMQEKGLVYPC-----YMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPV 166 (490)
T ss_dssp SEEEEEGGGCHHHHHHHHHHHHHTTSEEEE-----CC-------------------CCCCTTCCCTTCCCCCCCTTCCCE
T ss_pred CCCCcccccCHHHHHHHHHHHHHCCCEEeC-----CCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCce
Confidence 54 468899999999999999999999942 222110 0 1112221110000111110
Q ss_pred -ccCC-----------Cc-------cCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCceeeeccccc
Q 008191 243 -AVDS-----------RK-------KNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDL 303 (574)
Q Consensus 243 -~~~~-----------~k-------~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~dih~~G~Dl 303 (574)
.+.. .+ ....||++.|. .|.|.+|+.|.. -....|-+-.| =|.|+
T Consensus 167 ~R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~-------------DG~ptY~lA~vV-DD~~mgIThVi--RG~D~ 230 (490)
T 4g6z_A 167 LRFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARP-------------DGTPMYNFCVVV-DDLDMGITHVI--RGDDH 230 (490)
T ss_dssp EEECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEE--EEGGG
T ss_pred EEEecCCCCcEEEEEeeeeeeeeccccCCCeEEEee-------------CCCccchhHHHH-HHHhcCCCEEE--ecccc
Confidence 0000 00 00123333322 367888876643 22234543333 38885
Q ss_pred cCccchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhh-ccChhhHHHHhhccCC--CCCCCCCH
Q 008191 304 VFPHHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGTHY--RSPINYSV 379 (574)
Q Consensus 304 ~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~~~--~~~~~fs~ 379 (574)
+ ....-.+.+..|++..+| .| .|...++- +|+||||+.|. +++.++.+ .|.|++++-|++.-.+ ...--||.
T Consensus 231 l-~~tprq~~l~~aLG~~~P-~f-~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~ 306 (490)
T 4g6z_A 231 V-NNTPRQINILRALGGEVP-VY-AHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTR 306 (490)
T ss_dssp G-GGHHHHHHHHHHTTCCCC-EE-EEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCH
T ss_pred c-cChHHHHHHHHHcCCCCC-eE-EEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCH
Confidence 3 222223344456666654 34 77777654 79999999987 68888875 6999999999988533 33344787
Q ss_pred HHHHHH
Q 008191 380 VQLESA 385 (574)
Q Consensus 380 ~~l~~a 385 (574)
+.+.+.
T Consensus 307 ~eli~~ 312 (490)
T 4g6z_A 307 EQFVEW 312 (490)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776554
No 35
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.35 E-value=1.3e-11 Score=133.45 Aligned_cols=223 Identities=20% Similarity=0.152 Sum_probs=141.5
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||+|+++....++|- ..| .|+.=|+|.|. ..-...+.+.+.++|+.||+. +
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~--~gG---~fiLRieDtD~-------------~R~~~~~~~~I~~~L~wlGl~-w 72 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARH--TGG---TFVFRIEDTDA-------------QRDSEESYLALLDALRWLGLD-W 72 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHH--HTC---EEEECBCCCCT-------------TTCCHHHHHHHHHHHHHHTCC-C
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHH--cCC---EEEEEECcCCC-------------cccChHHHHHHHHHHHHcCCC-c
Confidence 4899999999999999999999985 344 57777888863 223346788999999999997 4
Q ss_pred CC---------cccccccHHHHHHHHHHHHHCCceeeecCceeecCCC-------------CCC----cccccCccc-cc
Q 008191 183 SV---------EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK-------------FPE----YGQLSGRKL-ED 235 (574)
Q Consensus 183 d~---------~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~-------------~~~----yg~Ls~~~~-~~ 235 (574)
|- ..+.|++.+.-.+++++|+++|.+|.- ||... .+. |-.++.... ..
T Consensus 73 Degp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~c-----~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~ 147 (498)
T 2ja2_A 73 DEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHA-----FSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAY 147 (498)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE-----CCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHH
T ss_pred CCCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeEEe-----CCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhh
Confidence 54 457789999999999999999999952 11110 011 111221000 00
Q ss_pred ccCCCc--cccCCC-----------------ccCccchhhcccccCCCCccccCCcCcCCCCccchhHHHHhhhCCCcee
Q 008191 236 NRAGER--VAVDSR-----------------KKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDI 296 (574)
Q Consensus 236 ~~~g~~--v~~~~~-----------------k~~~~Df~lwk~~~~g~~~w~~~WG~g~PgWhiecsam~~~~lG~~~di 296 (574)
...|.. +.+... -....||++.|. .|.|.+|+.|..- ....|. +.
T Consensus 148 ~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~ptY~lA~vVD-D~~mgi--th 211 (498)
T 2ja2_A 148 LAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDFALTRA-------------SGDPLYTLVNPCD-DALMKI--TH 211 (498)
T ss_dssp HHTTCCCEEEECCCSSCEEEEETTTEEEEECTTCSCCCBSBCT-------------TSCBCHHHHHHHH-HHHTTC--CE
T ss_pred hccCCCceEEEECCCCceEEEecccceEeecccccCcceeEcc-------------CCCcchhhHHHHH-hhhcCC--CE
Confidence 111221 000000 001124443332 3778888766422 223443 33
Q ss_pred eeccccccCccchHHHHHHhhc-----cCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhh-ccChhhHHHHhhcc
Q 008191 297 HGGGMDLVFPHHENEIAQSCAA-----CNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT 369 (574)
Q Consensus 297 h~~G~Dl~fpH~~~~~A~~~a~-----~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~ 369 (574)
-+-|.|++ .+....+++..++ +.++| .| .|..+++ .+|.||||+.|+ ++++++.+ .|.|+++|.|++.-
T Consensus 212 viRG~D~~-~~t~~q~~l~~aL~~~g~g~~~P-~~-~h~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 212 VLRGEDLL-PSTPRQLALHQALIRIGVAERIP-KF-AHLPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp EEEEGGGG-GGHHHHHHHHHHHHHTTSCCCCC-EE-EEECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTS
T ss_pred EEEChhhh-hccHHHHHHHHHHHhhcCCCCCC-eE-EEeeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHh
Confidence 34688855 2333344555666 55443 44 6777764 689999999999 58888887 59999999999885
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.20 E-value=7.9e-11 Score=128.53 Aligned_cols=252 Identities=18% Similarity=0.169 Sum_probs=145.8
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPP 182 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~~ 182 (574)
.|.|+|++||||+|++++...++|- +.| .|+.=|+|.|.. . -...|.+.+.++|+.||+. +
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~--~~G---~fiLRieDtD~~---------R----~~~~~~~~I~~~L~wlGl~-w 90 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS--CGG---KFLLRIEDTDQS---------R----YSPEAENDLYSSLKWLGIS-F 90 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH--TTC---EEEECBCCCCTT---------S----CCHHHHHHHHHHHHHHTCC-C
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH--cCC---EEEEEeCcCCCC---------c----CCHHHHHHHHHHHHHcCCC-C
Confidence 5899999999999999999999875 234 688889998832 1 1236778999999999996 4
Q ss_pred CCcc---------cccccHHHHHHHHHHHHHCCceeeecCceeecCCC------------------CCCcccccCccccc
Q 008191 183 SVEP---------RVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDK------------------FPEYGQLSGRKLED 235 (574)
Q Consensus 183 d~~~---------r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~------------------~~~yg~Ls~~~~~~ 235 (574)
|--| +.|++.+.-.+++++|+++|.+|.- ||... +..|-.++......
T Consensus 91 De~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C-----~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~ 165 (512)
T 4gri_A 91 DEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC-----YCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVEN 165 (512)
T ss_dssp SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE-----CCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHH
T ss_pred CcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc-----ccchHHHHHHHHhhhccCCCCccchhhcccchhhhhh
Confidence 4322 5678899999999999999999953 22210 01111121110000
Q ss_pred -ccCCCc-c-ccCCC-ccCc--cchhhcccccCCCCccccCC---cCcCCCCccchhHHHHhhhCCCceeeeccccccCc
Q 008191 236 -NRAGER-V-AVDSR-KKNP--ADFALWKSAKEGEPFWESPW---GPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 306 (574)
Q Consensus 236 -~~~g~~-v-~~~~~-k~~~--~Df~lwk~~~~g~~~w~~~W---G~g~PgWhiecsam~~~~lG~~~dih~~G~Dl~fp 306 (574)
...|.. + .+... ..+. .|...-..........+..| ..|.|.+|+.|+.- ....|- ..-+=|.|++ +
T Consensus 166 ~~~~~~~~~~R~k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVD-D~~mgI--THViRG~D~l-~ 241 (512)
T 4gri_A 166 ALIKKIKPVVRFKIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVD-DYLMKI--THVLRAQEWV-S 241 (512)
T ss_dssp HHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHH-HHHTTC--SEEEEEGGGG-G
T ss_pred hhhhhccceeeecccccCCceeeccccceEEecccccCCceEEEecCCcccccccceec-ccccCC--ceeccccccc-c
Confidence 001110 0 00000 0000 01110000000000000011 13678888776332 222343 3334478854 3
Q ss_pred cchHHHHHHhhccCCCCceEEEEeeEEEe-CCcccccccCceeehhhhhh-ccChhhHHHHhhcc--CCC-CCCCCCHHH
Q 008191 307 HHENEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVME-LYHPLALRLFLIGT--HYR-SPINYSVVQ 381 (574)
Q Consensus 307 H~~~~~A~~~a~~~~~~~~~~~h~g~v~~-~G~KMSKS~Gn~i~~~d~l~-~~~~d~lR~~ll~~--~~~-~~~~fs~~~ 381 (574)
.....+.+..+++.++|. |.|...++. +|+|+||+.|. .++.+..+ .|-|+++.=|++.- .+. ..--||.+.
T Consensus 242 sTp~q~~l~~alg~~~P~--y~H~pli~~~~g~kLSKR~~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~e 318 (512)
T 4gri_A 242 SGPLHVLLYKAFKWKPPI--YCHLPMVMGNDGQKLSKRHGS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKND 318 (512)
T ss_dssp GHHHHHHHHHHHTCCCCE--EEEECCCBCTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHH
T ss_pred ccHHHHHHHHHcCCCCCe--EEecchhccccccccCccccc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHH
Confidence 344444555666666543 478887765 79999999987 56777765 69999999887764 333 235688887
Q ss_pred HHHH
Q 008191 382 LESA 385 (574)
Q Consensus 382 l~~a 385 (574)
|.+.
T Consensus 319 li~~ 322 (512)
T 4gri_A 319 LEQF 322 (512)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 37
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.52 E-value=2.8e-07 Score=94.91 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=52.5
Q ss_pred hhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHh
Q 008191 288 AYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366 (574)
Q Consensus 288 ~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~l 366 (574)
..+-...++.++|.|+.. |.+.-.-....++.+++ +.+|+.++. ++|+|||||.||+|++.| +++++|..+
T Consensus 165 D~l~~~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki 236 (323)
T 2cyb_A 165 DIAHLGVDLAVGGIDQRK-IHMLARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKI 236 (323)
T ss_dssp HHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHH
T ss_pred HHHhcCCCEEEechhhHH-HHHHHHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHH
Confidence 333346789999999874 55443333333333333 346778774 689999999999999987 499999999
Q ss_pred hcc
Q 008191 367 IGT 369 (574)
Q Consensus 367 l~~ 369 (574)
.+.
T Consensus 237 ~~a 239 (323)
T 2cyb_A 237 RKA 239 (323)
T ss_dssp HTS
T ss_pred Hhc
Confidence 885
No 38
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.43 E-value=1.5e-06 Score=89.88 Aligned_cols=208 Identities=18% Similarity=0.133 Sum_probs=108.1
Q ss_pred eEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008191 98 GMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 98 ~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
....||.-|.|.+||||....+. -.+.|...|++|.++. .|.- .++.. ..+|.+ ..++..+..+++.++
T Consensus 13 ~~v~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~~I--aD~h-a~t~~----~~dp~~-~~~~~~~~~~~~lA~ 81 (340)
T 2g36_A 13 MRILSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECFYFV--ADWH-ALTTH----YDDVSK-LKEYTRDLVRGFLAC 81 (340)
T ss_dssp CEEEEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEEEEE--CHHH-HHHHH----TTCCTT-HHHHHHHHHHHHHHT
T ss_pred CeEEEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEEEEE--ecce-eecCC----CCCHHH-HHHHHHHHHHHHHHh
Confidence 34567888999999999876542 3344556899998875 3321 12211 245544 445556677788889
Q ss_pred CCCCCC--CcccccccHHHHHHHHHHHHHCCceeeecCceeecCCCCCCcccccCcccccccCCCccccCCCccCccchh
Q 008191 178 HCLPPS--VEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFA 255 (574)
Q Consensus 178 ~I~~~d--~~~r~s~~~~~i~~~i~~L~~kG~aY~~~~~v~f~~~~~~~yg~Ls~~~~~~~~~g~~v~~~~~k~~~~Df~ 255 (574)
|+. |+ .+...|+.. +..++.-.| .+....|.|.... .+|....-+
T Consensus 82 Gld-p~k~~if~qS~~~-~~~el~~~l-----------------~~~~~v~~l~r~~-------------~~k~~~~r~- 128 (340)
T 2g36_A 82 GID-PEKSVIFVQSGVK-EHAELALLF-----------------SMIVSVSRLERVP-------------TYKEIKSEL- 128 (340)
T ss_dssp TCC-TTTSEEEEGGGCT-HHHHHHHHH-----------------HTTSCHHHHHTCH-------------HHHTC-----
T ss_pred CCC-hhHeEEEECCchH-HHHHHHHHH-----------------HccCCHHHHHHhH-------------HHHhHHHHh-
Confidence 996 43 222233321 122221111 1111122221100 000000000
Q ss_pred hcccccCCCCccccCCcCcCC-CCccchhHHHHhhhCCCceeeeccccccCccchHHH--HHHhhc-cC---CCCceEEE
Q 008191 256 LWKSAKEGEPFWESPWGPGRP-GWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI--AQSCAA-CN---NSHISYWI 328 (574)
Q Consensus 256 lwk~~~~g~~~w~~~WG~g~P-gWhiecsam~~~~lG~~~dih~~G~Dl~fpH~~~~~--A~~~a~-~~---~~~~~~~~ 328 (574)
.++.+.+ |-+....-|+...+-+..++.++|.|+. +|.+.-. |.-... .+ ..|.-+..
T Consensus 129 --------------~~~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~-~hi~l~rdia~r~n~~yg~~f~~P~~~~~ 193 (340)
T 2g36_A 129 --------------NYKDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQV-YHIELTREIARRFNYLYDEVFPEPEAILS 193 (340)
T ss_dssp -----------------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGH-HHHHHHHHHHHHHHHHSCCCCCCCEEEEC
T ss_pred --------------ccCCCCChHHhhhHHHHHhhHHHhCCCEEEcccchH-HHHHHHHHHHHHhhhhcccccCCchhhhc
Confidence 0000111 1122233444555556789999999987 4655333 332211 12 23333333
Q ss_pred EeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 329 HNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 329 h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
|+-+|. ++|.|||||.||.|++.| +|+.++=.+.+.
T Consensus 194 ~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~Ki~~a 230 (340)
T 2g36_A 194 RVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQTILRM 230 (340)
T ss_dssp CSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHHHHHTC
T ss_pred cccccCCCCccccCCCCCCeEeeeC-----CHHHHHHHHHhC
Confidence 344443 489999999999999988 788888888774
No 39
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=98.05 E-value=4.1e-06 Score=85.91 Aligned_cols=79 Identities=25% Similarity=0.157 Sum_probs=47.7
Q ss_pred HHHHhhhCCCceeeeccccccCccchH--HHHHHhhc-cC---CCCceEE-EEeeEEE-eCCcccccccCceeehhhhhh
Q 008191 284 AMSAAYLGHSFDIHGGGMDLVFPHHEN--EIAQSCAA-CN---NSHISYW-IHNGFVT-IDSEKMSKSLGNFFTIRQVME 355 (574)
Q Consensus 284 am~~~~lG~~~dih~~G~Dl~fpH~~~--~~A~~~a~-~~---~~~~~~~-~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~ 355 (574)
-|+...+-+..++.++|.|+. +|.+. ++|.-... .+ ..|..+. .++-+|. ++|+|||||.+|.|++.|
T Consensus 130 LQAaDil~~~~~~vpvG~DQ~-~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d--- 205 (322)
T 3tzl_A 130 LMAADILLFDTRIVPVGKDQI-QHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS--- 205 (322)
T ss_dssp HHHHHHHHTTCSEEECCGGGH-HHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC---
T ss_pred HHHHHHHHhCCcEEEeccchH-HHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC---
Confidence 344444445678999999987 55543 33433221 11 1222221 0123333 589999999999999876
Q ss_pred ccChhhHHHHhhc
Q 008191 356 LYHPLALRLFLIG 368 (574)
Q Consensus 356 ~~~~d~lR~~ll~ 368 (574)
+++.++=.+.+
T Consensus 206 --~p~~i~~KI~~ 216 (322)
T 3tzl_A 206 --SEKTLKKQISS 216 (322)
T ss_dssp --CHHHHHHHHHT
T ss_pred --CHHHHHHHHHh
Confidence 57777766665
No 40
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.01 E-value=0.0002 Score=73.78 Aligned_cols=86 Identities=24% Similarity=0.064 Sum_probs=48.0
Q ss_pred HHhhhCCCceeeeccccccCccchHHH--HHHh--hcc--CCCCceEEEEe---eEEE-eCC-cccccccCceeehhhhh
Q 008191 286 SAAYLGHSFDIHGGGMDLVFPHHENEI--AQSC--AAC--NNSHISYWIHN---GFVT-IDS-EKMSKSLGNFFTIRQVM 354 (574)
Q Consensus 286 ~~~~lG~~~dih~~G~Dl~fpH~~~~~--A~~~--a~~--~~~~~~~~~h~---g~v~-~~G-~KMSKS~Gn~i~~~d~l 354 (574)
+...+-+..++.++|.|+. +|.+.-. |.-. .++ ...|. . +|+ -+|. ++| +|||||.||.|++.|=
T Consensus 134 aaDil~~~~~lvp~G~DQ~-~~i~l~rdla~r~n~~~g~~f~~P~-~-~~~~~~p~l~gldG~~KMSKS~~n~I~L~d~- 209 (337)
T 2el7_A 134 AADILIYKADTVPVGEDQV-QHIELTREIARRFNHLFGETFPEPQ-A-LLNPEAPRVPGIDGKAKMSKSLGNTIGLLEP- 209 (337)
T ss_dssp HHHHHHTTCCEEECCGGGC-HHHHHHHHHHHHHHHHHSSCCCCCE-E-ECCTTSCCCBCTTSSSBCCTTTTCCCBSSSC-
T ss_pred HhhHHhhCCcEEEcccchH-HHHHHHHHHHHHHHhhcCcccCCCe-e-ecccccccccCCCCccccCCCCCCeeeCcCC-
Confidence 3333435678999999987 4655333 3221 112 12232 3 333 2433 589 9999999999998773
Q ss_pred hccChhhHHHHhhcc--CCCCCCCCCH
Q 008191 355 ELYHPLALRLFLIGT--HYRSPINYSV 379 (574)
Q Consensus 355 ~~~~~d~lR~~ll~~--~~~~~~~fs~ 379 (574)
|+.++=.+.+. .....+.++.
T Consensus 210 ----p~~i~~Ki~~a~td~~~~~~~~~ 232 (337)
T 2el7_A 210 ----EESIWQKIQHLPDDPQRIRLSDP 232 (337)
T ss_dssp ----HHHHHHHHHTCCCCC--------
T ss_pred ----HHHHHHHHHhCCCCCccccccCC
Confidence 77888777774 3333444443
No 41
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=9.8e-06 Score=85.46 Aligned_cols=72 Identities=17% Similarity=0.043 Sum_probs=37.7
Q ss_pred hhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eC-CcccccccCce-eehhhhhhccChhhHHHH
Q 008191 289 YLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-ID-SEKMSKSLGNF-FTIRQVMELYHPLALRLF 365 (574)
Q Consensus 289 ~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~-G~KMSKS~Gn~-i~~~d~l~~~~~d~lR~~ 365 (574)
.+-...++.++|.|+. +|.+.-.-....++..++ +.+|+-+|. ++ |+|||||.||. |++.|= ++.++=-
T Consensus 178 ~l~~~~~~v~~G~DQ~-~~~~l~rdl~~r~~~~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~-----p~~i~kK 249 (394)
T 2dlc_X 178 EQFLDVDCQFGGVDQR-KIFVLAEENLPSLGYKKR--AHLMNPMVPGLAQGGKMSASDPNSKIDLLEE-----PKQVKKK 249 (394)
T ss_dssp HHHTTCSEEEEEGGGH-HHHHHHHHHGGGGTCCCC--EEEEECCCCCCC----------CCSCBTTCC-----HHHHHHH
T ss_pred HhhhCCCEEecCccHH-HHHHHHHHHHHHcCCCCC--EEEecccccCCCCCCcCCCCCCCCEEeccCC-----HHHHHHH
Confidence 3335678899999986 455444444444444433 336666664 57 99999999996 888663 5555555
Q ss_pred hhc
Q 008191 366 LIG 368 (574)
Q Consensus 366 ll~ 368 (574)
+.+
T Consensus 250 I~k 252 (394)
T 2dlc_X 250 INS 252 (394)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 42
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.85 E-value=4.3e-05 Score=80.00 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=47.3
Q ss_pred CceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
++.....+|--|.|++|||| ++.+..++++++..|..|.++ ++|.. +.. ....+++++. ++..++.+++
T Consensus 80 ~~~~~vysG~~PTG~lHLGh---~v~~~~~~~lQ~~~g~~v~i~--I~D~~-a~~----~r~~~~e~i~-~~~~~~~~~~ 148 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEE---YITLEFARYLQDAFNIQVIIQ--ILDDI-KVL----NREATINEAS-KMSNDLMKYI 148 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGG---HHHHHHHHHHHHHHCCEEEEE--ECHHH-HHH----TTSCCHHHHH-HHHHHHHHHH
T ss_pred CCCeEEEeccCCCCCccHHH---HHHHHHHHHHHHhcCCeEEEE--eCchH-Hhh----cCCCCHHHHH-HHHHHHHHHH
Confidence 43344557888889999999 444445555444468888877 55532 111 1225666554 5555777888
Q ss_pred HhcCCC
Q 008191 175 VDLHCL 180 (574)
Q Consensus 175 ~~L~I~ 180 (574)
-++|+.
T Consensus 149 lA~GlD 154 (386)
T 3hzr_A 149 LAFGFN 154 (386)
T ss_dssp HHTCCC
T ss_pred HHcCCC
Confidence 999996
No 43
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.84 E-value=4e-05 Score=80.20 Aligned_cols=72 Identities=17% Similarity=0.011 Sum_probs=40.7
Q ss_pred hhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCc-eeehhhhhhccChhhHHHHh
Q 008191 289 YLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGN-FFTIRQVMELYHPLALRLFL 366 (574)
Q Consensus 289 ~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn-~i~~~d~l~~~~~d~lR~~l 366 (574)
++-...++.++|.|+. +|.+.-.-....++..++ +.+|+.++. ++|+|||||.|| .|++.|= |+.++=.+
T Consensus 174 il~~~a~~v~~G~DQ~-~~~~l~rdl~~r~~~~~p--~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi 245 (372)
T 1n3l_A 174 EEYLKVDAQFGGIDQR-KIFTFAEKYLPALGYSKR--VHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKL 245 (372)
T ss_dssp HHHTTCSEEEEEGGGH-HHHHHHHHHGGGGTCCCC--EEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHH
T ss_pred HHHhcCCEEEcChhHH-HHHHHHHHHHHHcCCCCC--EEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHH
Confidence 3334678999999986 455443333334433333 345666654 689999999999 7888663 77777777
Q ss_pred hc
Q 008191 367 IG 368 (574)
Q Consensus 367 l~ 368 (574)
.+
T Consensus 246 ~~ 247 (372)
T 1n3l_A 246 KK 247 (372)
T ss_dssp HT
T ss_pred HH
Confidence 66
No 44
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.83 E-value=1.1e-05 Score=82.51 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=46.3
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...||--|.|.+||||+.+. -.+ +.+...|+++++..+ |+++ ++.. ..++++ .+++..++.+++.++|
T Consensus 30 ~vy~G~~PTg~lHlGhl~~l---~~~-~~lQ~~g~~~~~~i~-D~~a--~~~~----~~~~e~-i~~~~~~~~~~~~a~G 97 (314)
T 2zp1_A 30 SAYIGFEPSGKIHLGHYLQI---KKM-IDLQNAGFDIIILLA-DLAA--YLNQ----KGELDE-IRKIGDYNKKVFEAMG 97 (314)
T ss_dssp EEEEEECCCSSCBHHHHHHH---HHH-HHHHHTTEEEEEEEC-HHHH--HHTT----CCCHHH-HHHHHHHHHHHHHHTT
T ss_pred EEEEccCCCCCcchhhHHHH---HHH-HHHHHCCCCEEEEEe-cceE--ecCC----CCCHHH-HHHHHHHHHHHHHhcC
Confidence 44556666689999993333 233 444456999877654 1121 1110 124444 4566788999999999
Q ss_pred CCCCCCccccccc
Q 008191 179 CLPPSVEPRVSDH 191 (574)
Q Consensus 179 I~~~d~~~r~s~~ 191 (574)
+. ..+...|+.
T Consensus 98 ~d--~~~~~qs~~ 108 (314)
T 2zp1_A 98 LK--AKYVYGSEF 108 (314)
T ss_dssp CC--CEEEEGGGT
T ss_pred CC--eEEEECChh
Confidence 85 445444543
No 45
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.70 E-value=5.5e-05 Score=78.85 Aligned_cols=77 Identities=19% Similarity=0.120 Sum_probs=48.5
Q ss_pred HHHhhhCCCceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eC-----------------Ccccccc-cC
Q 008191 285 MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-ID-----------------SEKMSKS-LG 345 (574)
Q Consensus 285 m~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~-----------------G~KMSKS-~G 345 (574)
++...+-+..++.++|.|+. +|++.-.-....++.+.+ +.+|+-+|. ++ |+||||| .+
T Consensus 169 QaaDil~~~~~~v~~G~DQ~-~~~~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~ 245 (364)
T 2cya_A 169 QVSDIFYMDLDIALGGMDQR-KAHMLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPE 245 (364)
T ss_dssp HHHHHHHTTCSEEEEEGGGH-HHHHHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGG
T ss_pred HHhhHHhcCCCEEeccchHH-HHHHHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCC
Confidence 33344445678999999987 455444433333443333 236666654 46 7899999 78
Q ss_pred ceeehhhhhhccChhhHHHHhhcc
Q 008191 346 NFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 346 n~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
|.|++.|= |+.++=.+.+.
T Consensus 246 ~~I~L~d~-----p~~i~~Ki~~a 264 (364)
T 2cya_A 246 TAVFVVDS-----DDDIRRKIRKA 264 (364)
T ss_dssp GSCBTTCC-----HHHHHHHHHTS
T ss_pred CEeeccCC-----HHHHHHHHHhC
Confidence 99998763 67777666653
No 46
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=97.69 E-value=0.00016 Score=75.86 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=45.5
Q ss_pred CceeeeccccccCccchH--HHHHHhhc-c---C-----CC----CceEEEEeeEEE-eCCcccccccCceeehhhhhhc
Q 008191 293 SFDIHGGGMDLVFPHHEN--EIAQSCAA-C---N-----NS----HISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMEL 356 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~--~~A~~~a~-~---~-----~~----~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~ 356 (574)
..++.++|.|+. +|-+. ++|.-.-. + + -| ...+-+++-+|. ++|+|||||.||.|++.|= .
T Consensus 232 ~~~i~~gG~DQ~-~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~--~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQY-GNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPY--Q 308 (392)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTT--T
T ss_pred CccEEecCcchH-hHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccCC--C
Confidence 578999999984 56543 22322100 0 0 00 122446666664 5899999999999998772 3
Q ss_pred cChhhHHHHhhcc
Q 008191 357 YHPLALRLFLIGT 369 (574)
Q Consensus 357 ~~~d~lR~~ll~~ 369 (574)
-+|+.++=++.+.
T Consensus 309 tsp~~i~qki~~~ 321 (392)
T 1y42_X 309 TSVFDFYGYFVRR 321 (392)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC
Confidence 4566666666654
No 47
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=97.58 E-value=9.5e-05 Score=76.65 Aligned_cols=78 Identities=19% Similarity=0.143 Sum_probs=45.6
Q ss_pred HHHhhhCCCceeeeccccccCccchHHHHHHhhc---cC---CCCceEEEEeeEEE-eCCc-ccccccCceeehhhhhhc
Q 008191 285 MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA---CN---NSHISYWIHNGFVT-IDSE-KMSKSLGNFFTIRQVMEL 356 (574)
Q Consensus 285 m~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~---~~---~~~~~~~~h~g~v~-~~G~-KMSKS~Gn~i~~~d~l~~ 356 (574)
|+...+-+..++.++|.|+. +|.+.-.-..... .+ ..|.-+..|+-+|. ++|. |||||.||.|++.|=
T Consensus 154 QAaDil~~~~~~vpvG~DQ~-~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~--- 229 (351)
T 1yi8_B 154 QAADIAAFGATLVPVGDDQL-PMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS--- 229 (351)
T ss_dssp HHHHHHHHTCSEEEECGGGH-HHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC---
T ss_pred HHhhHHhcCCCEEEecCCcH-HHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCCC---
Confidence 33333334678999999987 4655333222211 12 23332222233433 4887 999999999987664
Q ss_pred cChhhHHHHhhc
Q 008191 357 YHPLALRLFLIG 368 (574)
Q Consensus 357 ~~~d~lR~~ll~ 368 (574)
|+.++=.+.+
T Consensus 230 --p~~i~~Ki~~ 239 (351)
T 1yi8_B 230 --ADEVARKVMG 239 (351)
T ss_dssp --HHHHHHHHHT
T ss_pred --HHHHHHHHHh
Confidence 6666666665
No 48
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.54 E-value=0.00048 Score=72.32 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=47.3
Q ss_pred CceeEEEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.....||--|.| .+||||. |.+..++++++..|..|..+ + +|.- ++.....+++++ +++..++.++
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~---v~~~~~~~lQ~~~~~~v~i~--I---~D~~--~~l~~~~~~e~i-~~~~~~~~~~ 144 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHL---IPFMFTKWLQDSFRVPLVIQ--M---TDDE--KFYFRNIPMEQV-EAMTTENIKD 144 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGS---HHHHHHHHHHHHHTCCEEEE--E---CHHH--HHHHSCCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeecCCCccchHHHH---HHHHHHHHHHHhcCCcEEEE--E---cchH--HHhcCCCCHHHH-HHHHHHHHHH
Confidence 44455667888888 7999996 44445555555558877776 2 2221 122223555554 4566678888
Q ss_pred HHhcCCC
Q 008191 174 MVDLHCL 180 (574)
Q Consensus 174 l~~L~I~ 180 (574)
+-++|+.
T Consensus 145 ~lA~GlD 151 (395)
T 3i05_A 145 IIAMGFD 151 (395)
T ss_dssp HHTTTCC
T ss_pred HHHcCCC
Confidence 8889986
No 49
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=97.45 E-value=0.00048 Score=71.89 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=41.9
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...||--|.|.+|||| .++.-...+.+...|++|+++.+ |.|+ ++. ...|.++.++ +.+...+.+++.++|
T Consensus 58 ~iy~G~~PTg~lHlG~---gvl~~~~~~~lQ~~G~~~~~lIa-D~ha--~i~--d~~~~~~~~i-~~~~~~~~~~~~a~G 128 (373)
T 3vgj_A 58 ICYDGFEPSGRMHIAQ---GLLKSIIVNKLTSNGCTFIFWIA-DWFA--HLN--NKMSGDLKKI-KKVGSYFIEVWKSCG 128 (373)
T ss_dssp EEEEEECCCSSCBHHH---HHHHHHHHHHHHTTTCEEEEEEC-HHHH--HHT--TGGGGCHHHH-HHHHHHHHHHHHHTT
T ss_pred eEEeCCCCCCCceehh---hHHHHHHHHHHHHCCCcEEEEEe-ccee--Eec--CCCCCCHHHH-HHHHHHHHHHHHHcC
Confidence 3456766778999999 22222212334557999887765 2222 010 1123444443 455566678899999
Q ss_pred CC
Q 008191 179 CL 180 (574)
Q Consensus 179 I~ 180 (574)
+.
T Consensus 129 ~d 130 (373)
T 3vgj_A 129 MN 130 (373)
T ss_dssp CC
T ss_pred CC
Confidence 96
No 50
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=97.38 E-value=0.00031 Score=72.74 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=36.2
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-e-CC-ccccccc-Cceeehhhh
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-I-DS-EKMSKSL-GNFFTIRQV 353 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~-~G-~KMSKS~-Gn~i~~~d~ 353 (574)
..|+.++|.|+. +|.+.-.=....++...+ +.+++.+|. + +| +|||||. +|.|++.|=
T Consensus 186 ~~~~~~~G~DQ~-~~i~l~Rdia~r~~~~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~ 247 (348)
T 2j5b_A 186 GIDICQLGIDQR-KVNMLAIEYANDRGLKIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247 (348)
T ss_dssp CCSEECCBGGGH-HHHHHHHHHHHHTTCCCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCC
T ss_pred CCcEEEeccChH-HHHHHHHHHHHHhCCCCc--eeecCccccCCCCcccccccCCCCCeEeecCC
Confidence 578899999987 454433322233333333 235666654 4 56 6999999 688987653
No 51
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.37 E-value=0.0005 Score=72.03 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=44.8
Q ss_pred ceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHH-cCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 96 KVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRH-LGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 96 ~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~-~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
.+.+| +|--|.|.+||||.-.++ +.|+|.. .|++|++..+ |.+. ++. ..+.+++++ +++..+..+++
T Consensus 73 p~~i~-sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i~Ia-D~ha--~~~---~~~~~~e~i-~~~~~~~~~~~ 140 (392)
T 3jxe_A 73 GFFLY-TGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYIQIT-DDEK--FLF---KENLTFDDT-KRWAYDNILDI 140 (392)
T ss_dssp CCEEE-EEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEEEEC-HHHH--HHH---CSSCCHHHH-HHHHHHHHHHH
T ss_pred CeEEE-eccCCCCchhHHHHHHHH----HHHHHHHhcCCceEEEec-chHH--hhc---CCCCCHHHH-HHHHHHHHHHH
Confidence 34444 454455999999966553 2344555 7999888765 3332 111 113455544 45666778888
Q ss_pred HhcCCC
Q 008191 175 VDLHCL 180 (574)
Q Consensus 175 ~~L~I~ 180 (574)
.++|+.
T Consensus 141 lA~GlD 146 (392)
T 3jxe_A 141 IAVGFD 146 (392)
T ss_dssp HTTCCC
T ss_pred HHhCcC
Confidence 999996
No 52
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.37 E-value=0.00041 Score=72.76 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=46.0
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHc-CCChHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANEL-GEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~-g~~~~e~a~~~~~~f~~ 172 (574)
++.....||--|. |.+||||. |.+..++++++..|..|.+. +.|.. +.... ..+++++ +++..++.+
T Consensus 72 g~~~~vy~G~~PTa~~lHlGh~---v~~~~~~~lQ~~~~~~v~i~--I~D~~-----~~~~r~~~~~e~i-~~~~~~~~~ 140 (393)
T 3hv0_A 72 GELFYLYTGRGPSSESLHVGHL---VPFLFTKYLQDTFKVPLVIQ--LTDDE-----KFIFKSNLTLEET-HNYAYENMK 140 (393)
T ss_dssp TCCCEEEEEECCSSSSCBSTTH---HHHHHHHHHHHHHCCCEEEE--ECHHH-----HHHHCTTCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEeCCCCCCCCccHHHH---HHHHHHHHHHHhcCCCeEee--ccChH-----HHhhccCCCHHHH-HHHHHHHHH
Confidence 4333455777788 78999994 44445666555557776663 22322 21222 4555554 456667788
Q ss_pred HHHhcCCC
Q 008191 173 DMVDLHCL 180 (574)
Q Consensus 173 ~l~~L~I~ 180 (574)
++.++|+.
T Consensus 141 ~~lA~GlD 148 (393)
T 3hv0_A 141 DIIACGFD 148 (393)
T ss_dssp HHHTTCCC
T ss_pred HHHHcCCC
Confidence 88899986
No 53
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=97.26 E-value=0.0002 Score=73.63 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=42.0
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...||--|.|.+||||....+.- +.+ +. .|+++++..+ |.|+- + . ..+++++ .++..++.+++-++|
T Consensus 3 ~vysG~~PTG~lHlGn~vg~l~~--~~~-lQ-~g~~~~~~Ia-D~ha~-~-~-----~~~~e~i-~~~~~~~~~~~la~G 69 (328)
T 1i6k_A 3 TIFSGIQPSGVITIGNYIGALRQ--FVE-LQ-HEYNCYFCIV-DQHAI-T-V-----WQDPHEL-RQNIRRLAALYLAVG 69 (328)
T ss_dssp EEEEEECCCSCCBHHHHHHTHHH--HHH-HT-TTSEEEEEEC-HHHHT-T-S-----CCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHH--HHH-HH-cCCcEEEEEe-Cceee-c-C-----CCCHHHH-HHHHHHHHHHHHHhC
Confidence 35677777799999998766521 112 23 3999866544 22210 0 0 0355544 456668888999999
Q ss_pred CC
Q 008191 179 CL 180 (574)
Q Consensus 179 I~ 180 (574)
+.
T Consensus 70 ld 71 (328)
T 1i6k_A 70 ID 71 (328)
T ss_dssp CC
T ss_pred CC
Confidence 96
No 54
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.25 E-value=0.00036 Score=73.41 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=45.7
Q ss_pred CceeEEEcCCCCCC-cCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPYD-LSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~yg-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.....||--|.| .+||||. |.+..++++++..|..|.+. +.|.- +++.+ ..+++++ +++..++.++
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~---v~~~~~~~lQ~~~g~~~~i~--IaD~~-a~l~~----~~~~e~i-~~~~~~~~~~ 167 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHT---IPFLLCKYMQDAFKIRLVIQ--ITDDE-KFLWK----SMRLEDA-MAYGRENIKD 167 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGH---HHHHHHHHHHHHHTCCEEEE--ECHHH-HHHHS----SCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeeCCCCCcccHHHH---HHHHHHHHHHHhcCCcEEEE--eeChH-HHcCC----CCCHHHH-HHHHHHHHHH
Confidence 44445557888887 8999994 44445555444458777664 22321 22221 2555554 4566678888
Q ss_pred HHhcCCC
Q 008191 174 MVDLHCL 180 (574)
Q Consensus 174 l~~L~I~ 180 (574)
+-++|+.
T Consensus 168 ~lA~GlD 174 (406)
T 3tze_A 168 IVTLGFD 174 (406)
T ss_dssp HHTTTCC
T ss_pred HHHcCCC
Confidence 8899985
No 55
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.17 E-value=0.0011 Score=70.36 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=46.8
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.....||--|. |.+||||.-+++ .++++++..|++++++.+ |.++ .+. ....+++. ++++..+..++
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~---~l~~lQ~~~g~~~i~lI~-D~ta--~l~---~~~~t~e~-i~~~~~~~~~~ 169 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFV---FTKWLQEVFDVPLVIELT-DDEK--FLF---KHKLTIND-VKNFARENAKD 169 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC-HHHH--HHH---CTTCCHHH-HHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHH---HHHHHHHHcCCeEEEEEe-cccc--eeC---CCCCCHHH-HHHHHHHHHHH
Confidence 3344566777788 899999976544 344444448998877776 2111 111 11245444 55666677788
Q ss_pred HHhcCCC
Q 008191 174 MVDLHCL 180 (574)
Q Consensus 174 l~~L~I~ 180 (574)
+-++|+.
T Consensus 170 ~lA~GlD 176 (432)
T 2ip1_A 170 IIAVGFD 176 (432)
T ss_dssp HHTTTCC
T ss_pred HHHhCCC
Confidence 8888885
No 56
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.16 E-value=0.0011 Score=74.54 Aligned_cols=74 Identities=12% Similarity=-0.015 Sum_probs=42.4
Q ss_pred eEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008191 98 GMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL 177 (574)
Q Consensus 98 ~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L 177 (574)
....||--|.|.+|||| .++.-+..+.+...|++|++..+ |-|+. | . ...|.+++++ +.+...+.+++.++
T Consensus 41 ~~vy~G~~PTg~lHLG~---~v~~~~~~~~lQ~~G~~~~~lIa-D~ha~-~-~--d~~~~~~e~i-~~~~~~~~~~~lA~ 111 (690)
T 3p0j_A 41 IRCYDGFEPSGRMHIAQ---GIFKAVNVNKCTAAGCEFVFWVA-DWFAL-M-N--DKVGGELEKI-RIVGRYLIEVWKAA 111 (690)
T ss_dssp EEEEEEECCCSCCBHHH---HHHHHHHHHHHHHTTEEEEEEEC-CGGGG-G-G--CTTTTHHHHH-HHHHHHHHHHHHHT
T ss_pred ceEEeeecCCCcchhHh---hHHHHHHHHHHHHCCCcEEEEEe-eeEEE-e-c--CCCcchHHHH-HHHHHHHHHHHHHc
Confidence 34567777888999999 32222223345567999877665 33321 0 0 0122333333 44556677788999
Q ss_pred CCC
Q 008191 178 HCL 180 (574)
Q Consensus 178 ~I~ 180 (574)
|+.
T Consensus 112 GlD 114 (690)
T 3p0j_A 112 GMD 114 (690)
T ss_dssp TCC
T ss_pred CCC
Confidence 985
No 57
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.00087 Score=70.01 Aligned_cols=78 Identities=22% Similarity=0.145 Sum_probs=47.8
Q ss_pred HHHhhhCCCceeeeccccccCccchHHHHHHhhccCC-------CCceEEEEeeEEE-eCC------------------c
Q 008191 285 MSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNN-------SHISYWIHNGFVT-IDS------------------E 338 (574)
Q Consensus 285 m~~~~lG~~~dih~~G~Dl~fpH~~~~~A~~~a~~~~-------~~~~~~~h~g~v~-~~G------------------~ 338 (574)
|+...+-+..|+.++|.|+. +|++.-.-....++.. .+..+.+++.+|. ++| +
T Consensus 172 QaaDil~~~~~~vp~G~DQ~-~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~ 250 (375)
T 2cyc_A 172 QVADIFYQGVTIAHAGMDQR-KAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQM 250 (375)
T ss_dssp HHHHHHHTTCSEEEEEGGGH-HHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeecccchHH-HHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhh
Confidence 34444445678999999987 5655333332333220 1122335656654 577 8
Q ss_pred cccccc-CceeehhhhhhccChhhHHHHhhc
Q 008191 339 KMSKSL-GNFFTIRQVMELYHPLALRLFLIG 368 (574)
Q Consensus 339 KMSKS~-Gn~i~~~d~l~~~~~d~lR~~ll~ 368 (574)
|||||. +|.|++.|= |+.++=.+.+
T Consensus 251 KMSKS~~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 251 KMSKSKPYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp BGGGSCGGGSCBTTCC-----HHHHHHHHHH
T ss_pred cccCCCCCCeeccCCC-----HHHHHHHHHH
Confidence 999998 788988764 6677766655
No 58
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=97.06 E-value=0.008 Score=62.74 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=42.7
Q ss_pred EEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 008191 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC 179 (574)
Q Consensus 100 y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I 179 (574)
..+|--|.|.+||||.-.++.- + +.|. .|++|++... |.|. ++ ...+++++ .++..+...++.+.|+
T Consensus 38 i~sG~~PTG~lHLGhyvGal~~--~-~~LQ-~~~~~~~~Ia-D~hA--lt-----~~~~~~~l-r~~~~~~aa~~lA~Gl 104 (388)
T 3prh_A 38 IFSGIQPSGSVTLGNYIGAMKQ--F-VELQ-HDYNSYFCIV-DQHA--IT-----VPQDRLEL-RKNIRNLAALYLAVGL 104 (388)
T ss_dssp EEEEECCCSCCBHHHHHHTHHH--H-HHTT-TTSEEEEEEC-HHHH--TT-----SCCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred EEEeeCCCCcchHHHHHHHHHH--H-HHHH-ccCcEEEEEe-ccee--ee-----cCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 5678888899999997554421 1 1222 4999876542 3332 11 13455554 4555678888999999
Q ss_pred C
Q 008191 180 L 180 (574)
Q Consensus 180 ~ 180 (574)
.
T Consensus 105 D 105 (388)
T 3prh_A 105 D 105 (388)
T ss_dssp C
T ss_pred C
Confidence 6
No 59
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=97.04 E-value=0.00068 Score=70.13 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=42.3
Q ss_pred EEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 99 ~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
...||--|.|.+||||....+.- + +.|.. |+++++..+ |.|. -+- ..+|+++ ..+..++.+++.++|
T Consensus 6 ~i~sG~~PTG~lHLGn~vg~l~~--~-~~lQ~-~~~~~~~Ia-D~ha-~~~------~~d~~~i-~~~~~~~~~~~lA~G 72 (348)
T 2yy5_A 6 RALTGIQASGKQHLGNYLGVMQS--L-IELQE-QCQLFVFVA-DLHS-ITV------DFQPQAL-KQNNFDLVRTLLAVG 72 (348)
T ss_dssp EEEEEECCCTTCBHHHHHHTGGG--H-HHHHH-HSEEEEEEC-HHHH-TTS------CCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHH--H-HHHHh-CCcEEEEEc-Chhh-ccC------CCCHHHH-HHHHHHHHHHHHHhC
Confidence 45667677799999997755411 1 12344 888766543 2121 000 0455544 356677888899999
Q ss_pred CCCCC
Q 008191 179 CLPPS 183 (574)
Q Consensus 179 I~~~d 183 (574)
+. |+
T Consensus 73 ld-p~ 76 (348)
T 2yy5_A 73 LD-PQ 76 (348)
T ss_dssp CC-TT
T ss_pred CC-hh
Confidence 96 44
No 60
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=96.88 E-value=0.00088 Score=72.06 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=46.1
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHH-cCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRH-LGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQ 172 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~-~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~ 172 (574)
++.....||--|. |.+||||.-+++ .+. +|.. .|++|+++.+=. ...+.. ..++++ +.++..++..
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~---~~~-~lQ~~~g~~~iilI~D~---~a~igd----~lt~e~-i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFI---FTK-WLQDVFNVPLVIQMTDD---EKYLWK----DLTLDQ-AYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHH---HHH-HHHHHHTCCEEEEECHH---HHHHHS----SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH---HHH-HHHHHhCCcEEEEEecc---eeeecC----CCCHHH-HHHHHHHHHH
Confidence 4444556777788 899999976654 333 4554 899877665521 111211 355555 4455566777
Q ss_pred HHHhcCCC
Q 008191 173 DMVDLHCL 180 (574)
Q Consensus 173 ~l~~L~I~ 180 (574)
++-++|+.
T Consensus 221 ~~lA~GlD 228 (477)
T 1r6t_A 221 DIIACGFD 228 (477)
T ss_dssp HHHTTCCC
T ss_pred HHHHhCCC
Confidence 78888985
No 61
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=96.78 E-value=0.00097 Score=70.82 Aligned_cols=75 Identities=12% Similarity=0.030 Sum_probs=46.0
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.....||--|. |.+||||.-+++ .++++++..|++++++.+= . ...+.. ..++++ +.++..++..+
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~---~~~~lQ~~~G~~~iilIgD--~-ta~igd----~lt~e~-i~~n~~~~~~~ 174 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFI---FTKWLQDVFNVPLVIQMTD--D-EKYLWK----DLTLDQ-AYGDAVENAKD 174 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHH---HHHHHHHHHTCCEEEEECH--H-HHHHHS----SCCHHH-HHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH---HHHHHHHHhCCcEEEEEec--c-eeeecC----CCCHHH-HHHHHHHHHHH
Confidence 4444556777788 899999976554 3444333389987776552 1 112221 355555 44555666777
Q ss_pred HHhcCCC
Q 008191 174 MVDLHCL 180 (574)
Q Consensus 174 l~~L~I~ 180 (574)
+-++|+.
T Consensus 175 ~lA~GlD 181 (437)
T 1r6u_A 175 IIACGFD 181 (437)
T ss_dssp HHTTTCC
T ss_pred HHHhCCC
Confidence 8888885
No 62
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=96.65 E-value=0.0037 Score=63.94 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=49.2
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
..+|.+||.|+. +|.+.-.=.....+..++ +-+++-.|. ++|+|||||.||.|++.| ++-+|+.++=++.+.
T Consensus 191 ~~~v~~gG~DQ~-~~i~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 191 GVVLCIGGSDQW-GNITSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWINT 263 (322)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHTC
T ss_pred CceEEecCchhH-HHHHHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhCC
Confidence 578999999987 565543322233333332 224445543 489999999999999988 677888888777664
No 63
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=96.37 E-value=0.0041 Score=64.46 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=37.9
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEE-EeCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v-~~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
..++.++|.|+. +|.+.-.=...-.+..++ +-++.-++ .++|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 210 ~~~i~p~G~DQ~-~~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 210 GCRVQLGGSDQL-GNIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp CCCEEEEEGGGH-HHHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 678999999987 555543333333333332 33555555 3589999999999999987 456788888888774
No 64
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.60 E-value=0.013 Score=62.12 Aligned_cols=71 Identities=23% Similarity=0.210 Sum_probs=46.4
Q ss_pred CceeeeccccccCccchHHHHHHhhc-cCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAA-CNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIG 368 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~-~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~ 368 (574)
..++.++|.|+. +|.+.-.=...-. +..++ +-+++-++. .+|+|||||.||.|++.| +.-+|+.++=++.+
T Consensus 186 ~~~i~~gG~DQ~-~ni~~grdla~r~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 186 NCKIQVGGSDQW-GNITSGIELMRRMYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTSPYEFYQFWIN 258 (420)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHHHHHHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSCHHHHHHHHHT
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhcCCCCe--eEeecccccCCccccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 678999999987 4554433222333 33332 335555554 589999999999999887 34456666666655
No 65
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.57 E-value=0.011 Score=62.48 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=47.5
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCcccccccCc-eeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSEKMSKSLGN-FFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn-~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
..++.++|.|+. +|.+.-.=.....+..++ +-++.-++. .+|+|||||.|| .|++.| +.-+|+.++=++.+.
T Consensus 187 ~~~i~~gG~DQ~-~ni~lgrdlarr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 187 GCTLQIGGADQW-GNIIAGVRLVRQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVNT 260 (432)
T ss_dssp CCCEEEECSTTH-HHHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhcC
Confidence 578999999987 454433322223333332 335555554 589999999999 999877 355677777777664
No 66
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=95.41 E-value=0.01 Score=62.96 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=48.7
Q ss_pred CceeeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCc-ccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSE-KMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~-KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
..++.++|.|+. +|.+.-.=.....+..++ +.+++-++. .+|. |||||.||.|++.| +|+.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~~--~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQR-FNLLVGREVQRAYGQSPQ--VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHHHHTTCCCC--EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHH-HHHHHHHHHHHHhCCCCc--eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 478999999987 566544433333433332 335556554 5885 99999999999988 888888888775
No 67
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.39 E-value=0.0064 Score=64.25 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=46.8
Q ss_pred CceeeeccccccCccchHHHHHHhhc-cCCCCceEEEEeeEEE-eCCcccccccCceeehhhhhhccChhhHHHHhhcc
Q 008191 293 SFDIHGGGMDLVFPHHENEIAQSCAA-CNNSHISYWIHNGFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369 (574)
Q Consensus 293 ~~dih~~G~Dl~fpH~~~~~A~~~a~-~~~~~~~~~~h~g~v~-~~G~KMSKS~Gn~i~~~d~l~~~~~d~lR~~ll~~ 369 (574)
..++.++|.|+. +|.+.-.=..... +..++ +-+++-++. .+|+|||||.||.|++.| +.-+|+.++=++.+.
T Consensus 185 ~~~i~~gG~DQ~-~ni~lgrdlarr~~~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (419)
T 2ts1_A 185 GCRLQIGGSDQW-GNITAGLELIRKTKGEARA--FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWINT 258 (419)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHHHHHHC--CC--EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhcCCCCe--eecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHhcC
Confidence 578999999987 4554333222333 33332 335555554 589999999999999887 345677777666663
No 68
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=87.92 E-value=0.9 Score=46.54 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=41.3
Q ss_pred EEcCCCCCCcCcchhhHHHHHHHHHHHHHHH-cCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008191 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRH-LGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLH 178 (574)
Q Consensus 100 y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~-~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~ 178 (574)
..+|--|.|.+||||.-.++ ..+.++ .++++++... |.|. ++ ...+|+ ..+++..+...++.+.|
T Consensus 18 i~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~~~~~~~~ia-D~hA--~t-----~~~~~~-~~~~~~~~~~~~~lA~G 83 (346)
T 3n9i_A 18 VFSGAQPSGELTIGNYMGAL-----RQWVQMQDDYDCIYCIV-DLHA--IT-----ARQDPA-LLRKRTLDTLALYLACG 83 (346)
T ss_dssp EEEEECSCSCCBHHHHHHTH-----HHHHTTTTTSEEEEEEC-HHHH--TT-----SCCCHH-HHHHHHHHHHHHHHHHT
T ss_pred EEECcCCCCcccHHHHHHHH-----HHHHHHHhhCcEEEEEe-ccee--ec-----CCCCHH-HHHHHHHHHHHHHHHcC
Confidence 44566677999999965443 333222 3788766543 3332 11 124554 44566677888899999
Q ss_pred CCC
Q 008191 179 CLP 181 (574)
Q Consensus 179 I~~ 181 (574)
+.+
T Consensus 84 lDp 86 (346)
T 3n9i_A 84 IDP 86 (346)
T ss_dssp CCT
T ss_pred CCc
Confidence 963
No 69
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=85.25 E-value=2.5 Score=44.74 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=46.7
Q ss_pred CceeEEEcCCCCC-CcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 95 GKVGMYVCGVTPY-DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 95 ~~v~~y~cgpt~y-g~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
++.....||--|. |.+||||. |.+-.++++++.-|..|.+. ++|.. +.+ .+...+++++ +++..++.++
T Consensus 89 g~p~~vytG~dPTagsLHLGH~---v~~~~l~~lQ~~~g~~v~I~--IgD~~-a~~---~r~~lt~E~I-~~n~~~~~~~ 158 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHL---LPFIFTKYLQDAFKCYVVIQ--ITDDE-KFL---RNRSLSYAEV-DSYTRENIKD 158 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHH---HHHHHHHHHHHHHTCEEEEE--ECHHH-HHH---HCTTCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEecCCCCCCCccHHHH---HHHHHHHHHHHccCceEEEE--eeCcH-Hhh---cccCCCHHHH-HHHHHHHHHH
Confidence 4444566788888 89999994 44445555555557777764 33332 211 2224566554 4556677888
Q ss_pred HHhcCCC
Q 008191 174 MVDLHCL 180 (574)
Q Consensus 174 l~~L~I~ 180 (574)
+-++|+.
T Consensus 159 ~lA~GlD 165 (451)
T 3foc_A 159 IIACGFD 165 (451)
T ss_dssp HHTTTCC
T ss_pred HHHcCCC
Confidence 8888985
No 70
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=84.72 E-value=1.9 Score=44.65 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCceeEEEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008191 94 EGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQD 173 (574)
Q Consensus 94 ~~~v~~y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~ 173 (574)
.|+.....+|--|.|.+||||.-.++ -.+++...|++|++.. .|+|- +. -...+..+..+.+..++..+
T Consensus 67 ~gk~~~v~sG~~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~I-aD~ha--~t----~~~~~~~e~~r~~~~~~~~~ 135 (372)
T 3a04_A 67 RGERVAVLTGFMPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAI-ADAEA--FA----VRRIGREEAVRIAVEEYIAN 135 (372)
T ss_dssp TTCCCEEEEEECCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEE-CHHHH--HH----TTCCCHHHHHHHHHHTTHHH
T ss_pred cCCCCEEEeCcCCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEE-ecchh--hc----cCCCCCHHHHHHHHHHHHHH
Confidence 34444555777888999999954332 3455566799996543 23332 11 11234455566777788888
Q ss_pred HHhcCCCC
Q 008191 174 MVDLHCLP 181 (574)
Q Consensus 174 l~~L~I~~ 181 (574)
+-++|+.+
T Consensus 136 ~lA~GlDP 143 (372)
T 3a04_A 136 MIALGLDP 143 (372)
T ss_dssp HHHHTCCT
T ss_pred HHHcCCCh
Confidence 99999963
No 71
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=83.90 E-value=0.42 Score=50.65 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=31.8
Q ss_pred eeeccccccCccchHHHHHHhhccCCCCceEEEEeeEEE-eCCc--ccccccCc-eeehhh
Q 008191 296 IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVT-IDSE--KMSKSLGN-FFTIRQ 352 (574)
Q Consensus 296 ih~~G~Dl~fpH~~~~~A~~~a~~~~~~~~~~~h~g~v~-~~G~--KMSKS~Gn-~i~~~d 352 (574)
+..+|.|+. +|.+.-.-....++.+++. + +++-++. ++|. |||||.+| .|.+.|
T Consensus 290 ~VPvG~DQ~-~hlel~Rdia~rfn~~~p~-~-~~~~~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 290 LIASGIEQD-PYFRLARDLAPRMGHPKNA-Y-LLGKFLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EEEECTTTH-HHHHHHHHHTTTTTSCCCE-E-EEECCCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeeeecchH-HHHHHHHHHHHHhCCCCCe-e-ecCCcccCCCCCCCccCCCCCCCeeeecC
Confidence 668899987 4554332222223333333 3 5556654 4774 99999997 676543
No 72
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=82.30 E-value=0.46 Score=48.65 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=41.9
Q ss_pred EEcCCCCCCcCcchhhHHHHHHHHHHHHHHHcCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 008191 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC 179 (574)
Q Consensus 100 y~cgpt~yg~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I 179 (574)
..+|--|.|.+||||.-.++. -+.+++. |+++++..+ |.|. .+ . ..+++ -..++..++..++.++|+
T Consensus 9 v~sG~~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia-D~ha-~~-~-----~~~~~-~~~~~~~~~~~~~lA~Gl 75 (341)
T 3sz3_A 9 VLSGVQPSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV-DLHA-IT-V-----RQDPQ-ALHEATLDALAICLAVGV 75 (341)
T ss_dssp EEEEECSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHH-TT-S-----CCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred EEeCcCCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe-ccee-Ec-C-----CCCHH-HHHHHHHHHHHHHHHcCC
Confidence 456777779999999765441 1223333 588766533 3332 11 1 24554 445666788889999999
Q ss_pred CC
Q 008191 180 LP 181 (574)
Q Consensus 180 ~~ 181 (574)
.+
T Consensus 76 Dp 77 (341)
T 3sz3_A 76 DP 77 (341)
T ss_dssp CT
T ss_pred Ch
Confidence 63
No 73
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=80.66 E-value=1.1 Score=46.54 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=33.8
Q ss_pred CCCceeeeccccccCccchHHHHHHhhcc----CCCCceEEEEeeEEE-eCCcccccccCc-eeehhh
Q 008191 291 GHSFDIHGGGMDLVFPHHENEIAQSCAAC----NNSHISYWIHNGFVT-IDSEKMSKSLGN-FFTIRQ 352 (574)
Q Consensus 291 G~~~dih~~G~Dl~fpH~~~~~A~~~a~~----~~~~~~~~~h~g~v~-~~G~KMSKS~Gn-~i~~~d 352 (574)
|+...+...|.|+. ||.+.-.-...-++ .+.|. -+|+-++. ++|.|||||..| .|.+.|
T Consensus 206 gy~a~~VPVG~DQ~-~hleltRdiA~rfn~~~~~~~P~--~~~~~~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 206 GYRHVVVPVGADQD-PHLRLTRDLADRMAGVVELERPA--STYHKLQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp CCCCEEEEEEGGGH-HHHHHHHHHHHHTTTTSCCCCCE--EEEECCCBCTTSSBCCTTSGGGSCBTTC
T ss_pred CccceecccchhhH-HHHHHHHHHHHHhcCcccccChh--hhhhcccCCCCCCccCCCCCCcccccCC
Confidence 45555677799987 57654332222222 12333 24455543 589999999854 665543
No 74
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=70.46 E-value=2.7 Score=42.50 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=26.8
Q ss_pred eEEEcCCCCCCc-CcchhhHHHHHHHHHHHHHHHcCCeeEEEcC
Q 008191 98 GMYVCGVTPYDL-SHIGHARVYVTFDVLYRYLRHLGYEVCYVRN 140 (574)
Q Consensus 98 ~~y~cgpt~yg~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~ 140 (574)
....||--|.|+ +||||.- ..-.++ .+...|++++++.+
T Consensus 34 ~~vy~G~~PTg~slHlGh~l---~l~~~~-~lQ~~g~~~~~~i~ 73 (322)
T 2yxn_A 34 IALVCGFDPTADSLHLGHLV---PLLCLK-RFQQAGHKPVALVG 73 (322)
T ss_dssp CEEEEEECCSSSSCBHHHHH---HHHHHH-HHHHTTCEEEEEEC
T ss_pred CEEEEeecCCCCcccHHHHH---HHHHHH-HHHHcCCcEEEEEc
Confidence 345678778899 9999944 333344 44456999887766
No 75
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=69.74 E-value=6.5 Score=41.39 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=27.4
Q ss_pred CceeEEEcCCCCCCc-CcchhhHHHHHHHHHHHHHHHcCCeeEEEcC
Q 008191 95 GKVGMYVCGVTPYDL-SHIGHARVYVTFDVLYRYLRHLGYEVCYVRN 140 (574)
Q Consensus 95 ~~v~~y~cgpt~yg~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~ 140 (574)
++.....||--|.|+ +||||.- ..-.+++++ ..|++++++.+
T Consensus 35 ~~~~~vy~G~dPTg~sLHlGh~v---~l~~l~~lQ-~~G~~~i~lIg 77 (432)
T 1h3f_A 35 GRPLTVKLGADPTRPDLHLGHAV---VLRKMRQFQ-ELGHKVVLIIG 77 (432)
T ss_dssp CSCCEEEEEECTTCCSCBHHHHH---HHHHHHHHH-HTTCEEEEEEC
T ss_pred CCCcEEEEcccCCCCCCchhhHH---HHHHHHHHH-HCCCCEEEEEc
Confidence 333445678888875 9999954 333444444 56999877665
No 76
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=69.39 E-value=3.2 Score=43.59 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=26.4
Q ss_pred EEEcCCCCCCc-CcchhhHHHHHHHHHHHHHHHcCCeeEEEcC
Q 008191 99 MYVCGVTPYDL-SHIGHARVYVTFDVLYRYLRHLGYEVCYVRN 140 (574)
Q Consensus 99 ~y~cgpt~yg~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~ 140 (574)
...||--|.|+ +||||.- ..-.+++ +...|++++++.+
T Consensus 32 ~iy~G~dPTg~sLHlGh~v---~l~~l~~-lQ~~G~~~i~lIg 70 (419)
T 2ts1_A 32 TLYCGFDPTADSLHIGHLA---TILTMRR-FQQAGHRPIALVG 70 (419)
T ss_dssp EEEEEECCSSSSCBGGGHH---HHHHHHH-HHHTTCEEEEEEC
T ss_pred EEEEeeCCCCCCccHHHHH---HHHHHHH-HHHCCCcEEEEEc
Confidence 45678778888 9999944 3334444 4457999887765
No 77
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=69.18 E-value=3.5 Score=42.31 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=26.6
Q ss_pred eEEEcCCCCCCc-CcchhhHHHHHHHHHHHHHHHcCCeeEEEcC
Q 008191 98 GMYVCGVTPYDL-SHIGHARVYVTFDVLYRYLRHLGYEVCYVRN 140 (574)
Q Consensus 98 ~~y~cgpt~yg~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~ 140 (574)
....||--|.|+ +||||+.+.. .++++ ...|++++++.+
T Consensus 47 ~~vy~G~~PTg~sLHLGhl~~l~---~~~~l-Q~~G~~~~~lIa 86 (356)
T 2pid_A 47 QTIYCGFDPTADSLHVGHLLALL---GLFHL-QRAGHNVIALVG 86 (356)
T ss_dssp CEEEEEECCSSSSCBHHHHHHHH---HHHHH-HHTTCEEEEEEC
T ss_pred CEEEEeecCCCCcccHHHHHHHH---HHHHH-HHCCCcEEEEEc
Confidence 456678888896 9999954332 34444 457999887754
No 78
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=67.77 E-value=3.3 Score=43.55 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=41.7
Q ss_pred eEEEcCCCCCCc-CcchhhHHHHHHHHHHHHHHHcCCeeEEEcCC-c-cccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008191 98 GMYVCGVTPYDL-SHIGHARVYVTFDVLYRYLRHLGYEVCYVRNF-T-DVDDKIIARANELGEDPISLSRRYCEEFHQDM 174 (574)
Q Consensus 98 ~~y~cgpt~yg~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~-d-D~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l 174 (574)
....||--|.|+ +||||.- ..-.+++ +...|++++++.+= + =.||+--+...+.-.+++++. ++...+.+.+
T Consensus 33 ~~iy~G~dPTg~sLHlGh~v---~l~~~~~-lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~-~n~~~~~~~~ 107 (420)
T 1jil_A 33 VTLYCGADPTADSLHIGHLL---PFLTLRR-FQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVD-KNIEGISKQM 107 (420)
T ss_dssp CEEEEEECCSSSSCBHHHHH---HHHHHHH-HHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH-HHHHHHHHHH
T ss_pred CEEEEeeCCCCCCccHHHHH---HHHHHHH-HHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHH-HHHHHHHHHH
Confidence 345678778888 9999944 3334444 44579998877652 1 112221000111112444443 5566677766
Q ss_pred HhcCCC
Q 008191 175 VDLHCL 180 (574)
Q Consensus 175 ~~L~I~ 180 (574)
.++ +.
T Consensus 108 ~~~-ld 112 (420)
T 1jil_A 108 HNI-FE 112 (420)
T ss_dssp HHH-SC
T ss_pred HHH-hC
Confidence 666 53
No 79
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=67.23 E-value=3.7 Score=43.21 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=26.8
Q ss_pred eEEEcCCCCCCc-CcchhhHHHHHHHHHHHHHHHcCCeeEEEcC
Q 008191 98 GMYVCGVTPYDL-SHIGHARVYVTFDVLYRYLRHLGYEVCYVRN 140 (574)
Q Consensus 98 ~~y~cgpt~yg~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~ 140 (574)
....||--|.|+ +||||+-+. -.++++ ...|++++++.+
T Consensus 33 ~~iy~G~dPTg~sLHLGhlv~l---~~l~~l-Q~~G~~~i~lIg 72 (432)
T 2jan_A 33 MTVYAGFDPTAPSLHAGHLVPL---LTLRRF-QRAGHRPIVLAG 72 (432)
T ss_dssp CEEEEEECCSSSSCBGGGHHHH---HHHHHH-HHTTCEEEEEEC
T ss_pred CEEEEeeCCCCCCcCHHHHHHH---HHHHHH-HHCCCcEEEEEc
Confidence 345678888895 999995433 334444 457999988764
No 80
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=59.05 E-value=8.7 Score=39.11 Aligned_cols=69 Identities=29% Similarity=0.219 Sum_probs=39.8
Q ss_pred hHHHHhhhCCCceeeeccccccCccchH--HHHHHhhc-cC---CCC--ceEEEE--eeEE-Ee-CC-ccccccc---Cc
Q 008191 283 SAMSAAYLGHSFDIHGGGMDLVFPHHEN--EIAQSCAA-CN---NSH--ISYWIH--NGFV-TI-DS-EKMSKSL---GN 346 (574)
Q Consensus 283 sam~~~~lG~~~dih~~G~Dl~fpH~~~--~~A~~~a~-~~---~~~--~~~~~h--~g~v-~~-~G-~KMSKS~---Gn 346 (574)
.-|+...+-...|+.++|.|+. +|.+. ++|.-... .+ +.+ +...++ +.++ -+ +| +|||||. +|
T Consensus 133 ~lQaaDil~~~ad~vpvG~DQ~-~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~ 211 (341)
T 3sz3_A 133 VLMAADILLYGAHQVPVGSDQK-QHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKN 211 (341)
T ss_dssp HHHHHHHHTTTCSEECCCGGGH-HHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGG
T ss_pred HHHHHHHHHcCCCEEEeccchH-HHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCC
Confidence 3455555656789999999987 56543 44443321 12 111 111132 1222 24 56 6999999 78
Q ss_pred eeehhh
Q 008191 347 FFTIRQ 352 (574)
Q Consensus 347 ~i~~~d 352 (574)
.|.+.|
T Consensus 212 ~I~L~D 217 (341)
T 3sz3_A 212 VITLLE 217 (341)
T ss_dssp CCBTTC
T ss_pred eeecCC
Confidence 998755
No 81
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=55.48 E-value=16 Score=37.25 Aligned_cols=69 Identities=26% Similarity=0.211 Sum_probs=39.2
Q ss_pred hHHHHhhhCCCceeeeccccccCccchH--HHHHHhhc-cCCCC--ceEEEEe--eEE-Ee-CC-cccccccC---ceee
Q 008191 283 SAMSAAYLGHSFDIHGGGMDLVFPHHEN--EIAQSCAA-CNNSH--ISYWIHN--GFV-TI-DS-EKMSKSLG---NFFT 349 (574)
Q Consensus 283 sam~~~~lG~~~dih~~G~Dl~fpH~~~--~~A~~~a~-~~~~~--~~~~~h~--g~v-~~-~G-~KMSKS~G---n~i~ 349 (574)
.-|+...+-...|+.++|.|+. +|++. ++|.-... .++.+ ....++. .++ -+ +| +|||||.+ |.|.
T Consensus 142 ~lQAaDil~~~ad~vpvG~DQ~-~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~ 220 (346)
T 3n9i_A 142 VLMAADILLYQTNQVPVGEDQK-QHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIE 220 (346)
T ss_dssp HHHHHHHHTTTCSEECCCGGGH-HHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCB
T ss_pred HHHHHHHHHhCceEEEeccchH-HHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceec
Confidence 3455555656789999999987 56553 44443331 12211 1121321 222 23 67 59999997 6887
Q ss_pred hhh
Q 008191 350 IRQ 352 (574)
Q Consensus 350 ~~d 352 (574)
+.|
T Consensus 221 L~D 223 (346)
T 3n9i_A 221 LLE 223 (346)
T ss_dssp TTS
T ss_pred CCC
Confidence 654
No 82
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=50.53 E-value=48 Score=36.97 Aligned_cols=79 Identities=8% Similarity=-0.141 Sum_probs=49.4
Q ss_pred CCCCCCcCcchhhHHHHHHHHHHHHHHH-cCCeeEEEcCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 008191 103 GVTPYDLSHIGHARVYVTFDVLYRYLRH-LGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181 (574)
Q Consensus 103 gpt~yg~~HiGHar~~v~~Dvl~R~lr~-~G~~V~~v~~~dD~g~kI~~~A~~~g~~~~e~a~~~~~~f~~~l~~L~I~~ 181 (574)
.| +.|.+||||+-.++ -+++.+++. .|++|+++.+ |.-..|- .+.|.++ +-++.+...+.+++.++|..+
T Consensus 388 ~p-s~g~lHLGh~v~~~--k~l~~~~~~~~g~~v~ilIa--D~~A~i~---d~~g~~~-e~i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 388 MP-ALLKVPLDVAEGMI--KVTKDFIAAHPEGTVTLVLP--DWSAVAS---DEITGVE-KDISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp CC-CCSSCBHHHHHHHH--HHHHHHHHHCSSCEEEEEEC--TTHHHHT---TCTTCCH-HHHHHHHHHHHHHHHHHTCCT
T ss_pred cC-CCCCcccchHHHHH--HHHHHHHHHcCCCeEEEEEe--cchhhhC---CCCCCCH-HHHHHHHHHHHHHHHhcCCCc
Confidence 44 77999999976543 346777776 5888877655 2221111 1234554 445566788899999999853
Q ss_pred CCCcccccc
Q 008191 182 PSVEPRVSD 190 (574)
Q Consensus 182 ~d~~~r~s~ 190 (574)
...+.+.|+
T Consensus 459 k~~fv~~S~ 467 (690)
T 3p0j_A 459 SVKIVTENE 467 (690)
T ss_dssp TSEEEEHHH
T ss_pred CeEEEECCc
Confidence 334444443
No 83
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=36.82 E-value=26 Score=26.30 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHHHHHHhHhC
Q 008191 513 EDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAV 545 (574)
Q Consensus 513 ~~~i~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~ 545 (574)
...+..|-++-.+|-++-+|++|=.|||++..+
T Consensus 23 ~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L 55 (63)
T 1e52_A 23 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345556666666777888999999999987654
Done!