RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008191
(574 letters)
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 1034 bits (2674), Expect = 0.0
Identities = 451/567 (79%), Positives = 488/567 (86%), Gaps = 16/567 (2%)
Query: 9 KCYKPLASIKFSPFINS-FHT-LQLRPPKPNNRRVFRCFSTLNSSPNVIDDKSNGKTDGD 66
K +PL ++ S S LRPPK R+ CF + ++ +
Sbjct: 5 KSCRPLTPLRLSSPPRSQLRIAFPLRPPK--ERQYRSCFFSASAL------------ASN 50
Query: 67 DKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYR 126
PAS +L LYNTMSRK+EL KPKVEGKVGMYVCGVT YDLSHIGHARVYVTFDVLYR
Sbjct: 51 GAPASRGRELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYR 110
Query: 127 YLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEP 186
YL+HLGYEV YVRNFTDVDDKIIARANELGEDPISLSRRYCEEF DM LHCLPPSVEP
Sbjct: 111 YLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEP 170
Query: 187 RVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDS 246
RVSDH+P IIDMI QILDNG AYRVDGDVYFSVDKFPEYG+LSGRKLEDNRAGERVAVDS
Sbjct: 171 RVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDS 230
Query: 247 RKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 306
RKKNPADFALWK+AKEGEPFW+SPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP
Sbjct: 231 RKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 290
Query: 307 HHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366
HHENEIAQSCAAC +S+ISYWIHNGFVT+DSEKMSKSLGNFFTIRQV++LYHPLALRLFL
Sbjct: 291 HHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFL 350
Query: 367 IGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKF 426
+GTHYRSPINYS VQLESASERIFYIYQTLHDCE++L D+ KDS+PPDT+ INKF
Sbjct: 351 LGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKF 410
Query: 427 HNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTV 486
H++F+ SMSDDLHT V LAALS+PLKTINDLLHTRKGKKQ RLESLAALEK IR+VL+V
Sbjct: 411 HDEFVTSMSDDLHTPVALAALSEPLKTINDLLHTRKGKKQEKRLESLAALEKKIRDVLSV 470
Query: 487 LGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVG 546
LGLM T YSE L QLREKAL+RA LTE+QVLQ+IE+RTVARKNKEYEKSDAIRKDLAAVG
Sbjct: 471 LGLMPTSYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVG 530
Query: 547 IALMDSPVGTTWRPALPLALQEQAVAT 573
IALMDSP GTTWRPA+PLALQEQ AT
Sbjct: 531 IALMDSPDGTTWRPAIPLALQEQVAAT 557
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 714 bits (1845), Expect = 0.0
Identities = 243/485 (50%), Positives = 313/485 (64%), Gaps = 25/485 (5%)
Query: 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYE 134
L +YNT++R++E KP GKV MYVCG T YD +HIGHAR +V FDVL RYLR+LGY+
Sbjct: 2 MLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYK 61
Query: 135 VCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPH 194
V YVRN TD+DDKII RANE GE L+ RY FH+DM L+ LPP +EPR ++H+P
Sbjct: 62 VTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPE 121
Query: 195 IIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
II++I +++D G AY DGDVYF V KFP+YG+LSGR L++ +AG RV V K++P DF
Sbjct: 122 IIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
ALWK+AK GEP WESPWG GRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 ALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S AA +YW+HNGFVT++ EKMSKSLGNFFTIR +++ Y P LR FL+ HYRSP
Sbjct: 242 SEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSP 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+N+S LE A + + +Y L + + + +F F+ +M
Sbjct: 302 LNFSEEALEQAKKALERLYNALAE-----------TALGEDDEALLAELEEFKERFIEAM 350
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T LA L + + IN L + E+ AAL +R + VLGL
Sbjct: 351 DDDFNTPEALAVLFELAREINRAL-------ETKDKEAAAALAALLRALADVLGLEQD-- 401
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
+ +L + ++ IE+R ARK K++ +DAIR +LAA+GI L D+P
Sbjct: 402 -----EEALFEAAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTPD 456
Query: 555 GTTWR 559
GTTWR
Sbjct: 457 GTTWR 461
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 633 bits (1635), Expect = 0.0
Identities = 238/489 (48%), Positives = 309/489 (63%), Gaps = 31/489 (6%)
Query: 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYE 134
L LYNT++R++E P GKV MYVCG T YD +HIGHAR YV FDVL RYLR+LGY+
Sbjct: 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK 60
Query: 135 VCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPH 194
V YVRN TD+DDKII RA E G ++ RY F +DM L+ LPP +EPR ++H+
Sbjct: 61 VTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDE 120
Query: 195 IIDMITQILDNGFAYRV-DGDVYFSVDKFPEYGQLSGR-KLEDNRAGERVAVDSRKKNPA 252
II+ I ++++ G+AY DGDVYF V KF +YG+LSGR LE+ +AG RV VD K+NP
Sbjct: 121 IIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPL 180
Query: 253 DFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEI 312
DF LWK+AK GEP W+SPWG GRPGWHIECSAMS YLG +FDIHGGG DL+FPHHENEI
Sbjct: 181 DFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEI 240
Query: 313 AQSCAACNNSHIS-YWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHY 371
AQS AA + YW+HNGF+ ID EKMSKSLGNF T+R +++ Y P LRLFL+ +HY
Sbjct: 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHY 300
Query: 372 RSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFL 431
RSP+++S LE A + + +Y L + A LK+ F F
Sbjct: 301 RSPLDFSEELLEEAKKALERLYNALRRLRDLAGDAELADLKE------------FEARFR 348
Query: 432 ASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMS 491
++ DD +T LA L + K IN LL K A+ ++ +L +LGL
Sbjct: 349 EALDDDFNTPKALAVLFELAKEINRLLEEGK--------SDAKAVLSALKALLAILGLK- 399
Query: 492 TGYSEVLLQLREKALKRADLTEDQ-VLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALM 550
+L L ++ + D ++D+ + IE+R ARK K + +D IR +L A+GI L
Sbjct: 400 ------VLGLFPQSGAQEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILE 453
Query: 551 DSPVGTTWR 559
D+P GTTWR
Sbjct: 454 DTPDGTTWR 462
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 542 bits (1399), Expect = 0.0
Identities = 232/485 (47%), Positives = 308/485 (63%), Gaps = 23/485 (4%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNT++R++E +P V+GKV MYVCG T YD HIGHAR + FDVL RYLR+LGY+V
Sbjct: 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKV 60
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YV+N TD+DDKII RA E GE +S R+ E + +DM L+ LPP +EPR ++H+ I
Sbjct: 61 QYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEI 120
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I+ I Q+++ G+AY D GDVYF V KF +YG+LS + L+ AG RV VD K+N DF
Sbjct: 121 IEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDF 180
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWKS+KEGEP W+SPWG GRPGWHIECSAM+ YLG DIHGGG+DL+FPHHENEIAQ
Sbjct: 181 VLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ 240
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S AA YW+HNGF+ ID+EKMSKSLGNFFT+R V++ Y P LR FL+ HYRSP
Sbjct: 241 SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSP 300
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+++S LE+A + +Y+ L + +L+ +L +F F+ +M
Sbjct: 301 LDFSEELLEAAKNALERLYKALRVLDTSLAYSGNQSLNKFPDE------KEFEARFVEAM 354
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DDL+T LA L + K+IN L A+ +E L LE + L +L + +
Sbjct: 355 DDDLNTANALAVLFELAKSIN--LTFVSKADAALLIEHLIFLE----SRLGLLLGLPSKP 408
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
+ ++ IE+R++ARK K++ K+D IR +LA GI L D+P
Sbjct: 409 VQAGSNDDLGEIE----------ALIEERSIARKEKDFAKADEIRDELAKKGIVLEDTPQ 458
Query: 555 GTTWR 559
GTTWR
Sbjct: 459 GTTWR 463
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 460 bits (1186), Expect = e-161
Identities = 173/298 (58%), Positives = 214/298 (71%), Gaps = 1/298 (0%)
Query: 89 VKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKI 148
P +GKV MYVCG T YD SHIGHAR V FDVL RYL+ LGY+V +V+NFTD+DDKI
Sbjct: 2 FVPLHQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKI 61
Query: 149 IARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFA 208
I RA + GE L+ R+ + +DM L+ LPP +EPRV++H+ II+ I +++ G+A
Sbjct: 62 IKRAQQQGESFRELAARFITAYTKDMDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGYA 121
Query: 209 YRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFW 267
Y D GDVYF V FP+YG+LSG+ LE AG R V K++P DFALWK++KEGEP W
Sbjct: 122 YVSDNGDVYFDVSSFPDYGKLSGQNLEQLEAGARGEVGEGKRDPLDFALWKASKEGEPSW 181
Query: 268 ESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYW 327
+SPWG GRPGWHIECSAM+ YLG DIHGGG+DL FPHHENEIAQS AA + YW
Sbjct: 182 DSPWGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKFPHHENEIAQSEAAFDQQLAKYW 241
Query: 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESA 385
+HNG + I+ EKMSKSLGNF TIR V++ Y P LR FL+ HYRSP+++S LE A
Sbjct: 242 LHNGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRYFLLSVHYRSPLDFSEELLEQA 299
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 415 bits (1068), Expect = e-137
Identities = 216/499 (43%), Positives = 291/499 (58%), Gaps = 48/499 (9%)
Query: 78 LYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCY 137
+YNT++R++E P V MYVCG+T YD H+GHARV V FD++ R+LR GY + Y
Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTY 289
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIID 197
VRN TD+DDKIIARA E GE L+ R+ + H+D L L P +EP+ ++++P +I
Sbjct: 290 VRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIA 349
Query: 198 MITQILDNGFAY-RVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFAL 256
MI ++ NG AY +GDVY++V +F YGQLSG+ L+D RAGERV VD K++P DF L
Sbjct: 350 MIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVL 409
Query: 257 WKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSC 316
WK+AK GEP WESPWG GRPGWHIECSAMS G +FDIHGGG DL FPHHENEIAQS
Sbjct: 410 WKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSV 469
Query: 317 AACNN----------------SHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPL 360
A + SH+ YW+HNGF+ +D EKMSKSLGNFFTIR+V++ Y P
Sbjct: 470 GATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPE 529
Query: 361 ALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTV 420
+R F++ HYRSP+NYS L+ A + +Y TL + A
Sbjct: 530 VVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA-------------EFMLS 576
Query: 421 TSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTI 480
++N + F A+M+DD T +A L + +N + A L++L
Sbjct: 577 ENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVN----KTNDAQLAGCLKALGG----- 627
Query: 481 RNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRK 540
++GL+ +E L + L+ +++ I R AR +K + +SD IR
Sbjct: 628 -----IIGLLQRDPTEFL----QGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRD 678
Query: 541 DLAAVGIALMDSPVGTTWR 559
L I L D+ GTTWR
Sbjct: 679 LLNEHKIILEDNAGGTTWR 697
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 394 bits (1013), Expect = e-130
Identities = 187/539 (34%), Positives = 270/539 (50%), Gaps = 55/539 (10%)
Query: 68 KPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRY 127
K T L + N+++ + P+ +V Y CG T YD SH+GHAR YVTFD++ R
Sbjct: 32 KEGKYLTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRI 91
Query: 128 LR-HLGYEVCYVRNFTDVDDKIIARANELGEDPIS-LSRRYCEEFHQDMVDLHCLPPSVE 185
L + GY+V YV N TD+DDKII RA E L+R++ +EF +DM L+ PP V
Sbjct: 92 LEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVRPPDVI 151
Query: 186 PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLE------DNRA- 238
RVS+++P I+D I +I+DNGFAY +G VYF V+ F + G + KLE ++R
Sbjct: 152 TRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYP-KLEPESVADEDRIA 210
Query: 239 ---GERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFD 295
G V K++P DFALWK++K GEP W+SPWG GRPGWHIECSAM++ LG D
Sbjct: 211 EGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPID 270
Query: 296 IHGGGMDLVFPHHENEIAQSCAACNNSH--ISYWIHNGFVTIDSEKMSKSLGNFFTIRQV 353
IH GG+DL FPHH+NE+AQS A + H ++Y++H+G + I KMSKSL NF TIRQ
Sbjct: 271 IHSGGIDLKFPHHDNELAQS-EAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQA 329
Query: 354 MELYHPLALRLFLIGTHYRSPINYSVVQLESASER---IFYIYQTLHDCEKALSLLDAAA 410
+ Y +RL + + P+NYS ++ A E+ F + + L +
Sbjct: 330 LSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVK------IKLRESE 383
Query: 411 LKDSIPPDT---------VTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTR 461
L + + H L D+ T L AL + N L
Sbjct: 384 LTSPQKWTQHDFELNELFEETKSAVHAALL----DNFDTPEALQALQKLISATNTYL--N 437
Query: 462 KGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIE 521
G++ + L A + + +L++ GL+ + L E + R E
Sbjct: 438 SGEQPSAPLLRSVA--QYVTKILSIFGLVEGSDGLGSQGQNSTSENFKPLLEALLRFRDE 495
Query: 522 DRTVARKNKE-----------YEKSDAIRKD-LAAVGIALMDSPVGTT-WRPALPLALQ 567
R A+ + + D +R + L +GI + D P G + W+ LQ
Sbjct: 496 VRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQ 554
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 365 bits (939), Expect = e-121
Identities = 180/510 (35%), Positives = 263/510 (51%), Gaps = 50/510 (9%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNT+ R++E +P G V +Y CG T Y+ +HIG+ R YV D L R L LGY V
Sbjct: 3 LRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRV 62
Query: 136 CYVRNFTDV----------DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVE 185
+V N TDV +DK++ A E G+ + ++ Y F +D L+ PS+
Sbjct: 63 THVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIV 122
Query: 186 PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVD 245
++H+ +I +I ++ G Y G+VYF + FP YG L+ +ED +AG R+ D
Sbjct: 123 CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHD 182
Query: 246 SRKKNPADFALW--KSAKEGEPF-WESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMD 302
+ K+NP DF LW +S E W+SPWG G PGWHIECSAMS YLG DIH GG+D
Sbjct: 183 TNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVD 242
Query: 303 LVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHPLA 361
+ HH NEIAQ AA + YW+H+ F+ ++ KMSKS G F T+ + E + PL
Sbjct: 243 HIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLD 302
Query: 362 LRLFLIGTHYRSPINYSVVQLESAS-------ERIFYIYQTLHDCEKAL--SLLDAAALK 412
R FL+G HYRS + +S L++A R+ + ++ +L + AA +
Sbjct: 303 YRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAER 362
Query: 413 DSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLES 472
+ + + DF A++ DD T L+ L +K ++ L
Sbjct: 363 VAESRASESE--LLLTDFRAALEDDFSTPKALSELQKLVK--------DTSVPPSLCLSV 412
Query: 473 LAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALK---RADLTEDQVLQRIEDRTVARKN 529
L A++ TVLGL L+Q +L A +E+++ Q IE R AR+
Sbjct: 413 LQAMD-------TVLGLG-------LIQEATASLSAQVPAGPSEEEIGQLIEARAHARQT 458
Query: 530 KEYEKSDAIRKDLAAVGIALMDSPVGTTWR 559
K++ +D IR L A GI L D+ +GT W+
Sbjct: 459 KDFPLADEIRDKLKAEGIELEDTHLGTIWK 488
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 305 bits (783), Expect = 6e-99
Identities = 144/367 (39%), Positives = 198/367 (53%), Gaps = 37/367 (10%)
Query: 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANE 154
G MYVCG+TPYD +H+GHA Y+ FD++ R R G++V YV+N TDVDD ++ RA
Sbjct: 8 GTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR 67
Query: 155 LGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDG- 213
G D L+ R F +DM L LPP + +P +++++ ++L +G AY VD
Sbjct: 68 DGVDWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDE 127
Query: 214 ---DVYFSVDKFPEYGQLSG------RKLEDNRAG--ERVAVDSRKKNPADFALWKSAKE 262
DVYFSVD P++G SG +L R G +R K++P D LW++A+
Sbjct: 128 EYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPG----KRDPLDALLWRAARP 183
Query: 263 GEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNS 322
GEP W SP+GPGRPGWHIECSA++ LG FDI GGG DL+FPHHE A + AA
Sbjct: 184 GEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGER 243
Query: 323 HIS-YWIHNGFVTIDSEKMSKSLGNF-FTIRQVMELYHPLALRLFLIGTHYRSPINYSVV 380
+ +++H G + +D EKMSKS GN F R P A+RL L+ HYR+ ++
Sbjct: 244 RFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDA 303
Query: 381 QLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHT 440
L A R L A +L D + V A+++DDL T
Sbjct: 304 VLAEAEAR-------LARWRAAAALPAGPDAADVV--ARVR----------AALADDLDT 344
Query: 441 TVVLAAL 447
LAA+
Sbjct: 345 PGALAAV 351
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 301 bits (772), Expect = 6e-97
Identities = 148/383 (38%), Positives = 207/383 (54%), Gaps = 31/383 (8%)
Query: 75 QLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYE 134
L L++T + V+P E GMYVCG+TPYD +H+GHA Y+TFD++ R R G+
Sbjct: 17 PLRLFDTADGQVRPVEPGPE--AGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHR 74
Query: 135 VCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPH 194
V YV+N TDVDD + RA G D L + F +DM L LPP + +
Sbjct: 75 VHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDE 134
Query: 195 IIDMITQILDNGFAYRVDG----DVYFSVDKFPEYGQLSG--RKLEDNRAGERVAVDSR- 247
+++M+ ++L +G AY V+G DVYFS+D ++G SG R ER R
Sbjct: 135 VVEMVEKLLASGAAYIVEGPEYPDVYFSIDATEQFGYESGYDRATMLELFAERGGDPDRP 194
Query: 248 -KKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP 306
K++P D LW++A+EGEP W+SP+G GRPGWHIECSA++ LG FDI GGG DL+FP
Sbjct: 195 GKRDPLDALLWRAAREGEPSWDSPFGRGRPGWHIECSAIALNRLGAGFDIQGGGSDLIFP 254
Query: 307 HHENEIAQSCAACNNSHIS-YWIHNGFVTIDSEKMSKSLGNF-FTIRQVMELYHPLALRL 364
HHE A + AA ++ +++H G + +D EKMSKSLGN F + P A+RL
Sbjct: 255 HHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRL 314
Query: 365 FLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSIN 424
L+ HYR +++ L A R+ A AL D+ PD I
Sbjct: 315 GLLAGHYRQDRDWTDAVLAEAEARL-------------ARWRAALALPDA--PDATDLIA 359
Query: 425 KFHNDFLASMSDDLHTTVVLAAL 447
+ +++DL T LAA+
Sbjct: 360 RLR----QHLANDLDTPAALAAV 378
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 481
Score = 251 bits (643), Expect = 4e-77
Identities = 157/502 (31%), Positives = 253/502 (50%), Gaps = 49/502 (9%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNT ++ +K + KV Y CG T Y+ +HIG+ R Y+ D+L + LR L Y V
Sbjct: 3 LKLYNTKTKDLSELKNFSDVKV--YACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNV 60
Query: 136 CYVRNFTDV----------DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVE 185
Y N TD+ +DK++ A E G +SR + E F D L+ + P
Sbjct: 61 NYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKV 120
Query: 186 PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNR--AGERVA 243
S+++P +I+++ + +NGF Y V+G+VYF F YGQ++G L D + + RV
Sbjct: 121 LVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVE 180
Query: 244 VDSRKKNPADFALW---KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGG 300
+D K+N +DF LW K+ E W+SPWG G P WH+EC+AM+ Y + DIH GG
Sbjct: 181 IDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGG 240
Query: 301 MDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMEL-YHP 359
+D + HH NEIA + N ++H F+ ++ EKMSKS NF TI+ + + + P
Sbjct: 241 VDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSP 300
Query: 360 LALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDT 419
L R F + HYR+ + ++ L++ + L +L D L +
Sbjct: 301 LDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIE 360
Query: 420 VTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKT 479
+ ++++ FL ++ DL+ LA L D +K ++L+ L K
Sbjct: 361 FSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKD-----------------DNLSFLSKL 403
Query: 480 IRNVLTVLGLMSTGYSEVL-LQLREKALK---RADLTEDQVLQR-IEDRTVARKNKEYEK 534
++ + EVL L LRE+ L+ + D ++ IE+R +A+ K++++
Sbjct: 404 ---------RLAFKFDEVLSLGLREEILREIENHRIVIDDNMKSLIEERRLAKCEKDFKR 454
Query: 535 SDAIRKDLAAVGIALMDSPVGT 556
+D IR+ A+ G L+D+ GT
Sbjct: 455 ADEIREYFASKGFVLIDTEEGT 476
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 193 bits (493), Expect = 2e-58
Identities = 64/101 (63%), Positives = 78/101 (77%)
Query: 278 WHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDS 337
WHIECSAM+ YLG +FDIHGGG+DL+FPHHENEIAQS AA YW+H G +TID
Sbjct: 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG 172
Query: 338 EKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYS 378
EKMSKSLGNF T+R ++ Y P LRL L+ +HYRSP+++S
Sbjct: 173 EKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213
Score = 180 bits (458), Expect = 3e-53
Identities = 68/133 (51%), Positives = 82/133 (61%), Gaps = 6/133 (4%)
Query: 77 WLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVC 136
LYNT++R++E P G V MYVCG T YD +HIGHAR YV FDVL RYL LGY+V
Sbjct: 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVR 60
Query: 137 YVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHII 196
YV+N TD+DDKII RA E G ++ Y +EF +DM L+ LPP V PRV HI
Sbjct: 61 YVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLPPDVVPRVW----HIE 116
Query: 197 D--MITQILDNGF 207
M + L F
Sbjct: 117 CSAMAMKYLGETF 129
>gnl|CDD|153417 cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of cysteinyl
tRNA synthetases. This domain is found in cysteinyl
tRNA synthetases (CysRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. CysRS catalyzes the
transfer of cysteine to the 3'-end of its tRNA.
Length = 156
Score = 99.2 bits (248), Expect = 2e-24
Identities = 56/152 (36%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 410 ALKDSIPPDTVTSI--NKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQA 467
AL+ +PP TV F F+A+M DD +T LA L + + IN R K+
Sbjct: 17 ALRG-VPPTTVDIDWGEPFAERFIAAMDDDFNTPEALAVLFELAREIN-----RLKKEDI 70
Query: 468 MRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVAR 527
+ +LAAL K + VL GL+ E LQ L+ ++ I R AR
Sbjct: 71 EKAAALAALLKALGGVL---GLLQQD-PEAFLQ---GGTGEGGLSVAEIEALIAQRNQAR 123
Query: 528 KNKEYEKSDAIRKDLAAVGIALMDSPVGTTWR 559
K K++ ++D IR +LAA GI L DSP GTTWR
Sbjct: 124 KAKDWAEADRIRDELAAQGIILEDSPEGTTWR 155
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 79.4 bits (196), Expect = 1e-17
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 99 MYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGED 158
G+TP HIGH R VTFD L + R LGY+V + D I AN+ GE+
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGEN 60
Query: 159 PISLSRRYCEEFHQD--------MVDLHCL--PPSVEPRVSDHMPHI---IDMITQILDN 205
+ R+ E +D L + SD + HI ++++ +
Sbjct: 61 AKAFVERWIERIKEDVEYMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKA--G 118
Query: 206 GFAYR 210
G A
Sbjct: 119 GPARP 123
Score = 48.6 bits (116), Expect = 6e-07
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 277 GWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTI- 335
+ +A DIH GG D + H E + A + + G V
Sbjct: 77 EYMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKA-GGPARPFGLTFGRVMGA 134
Query: 336 DSEKMSKSL 344
D KMSKS
Sbjct: 135 DGTKMSKSK 143
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 57.8 bits (140), Expect = 4e-09
Identities = 62/299 (20%), Positives = 98/299 (32%), Gaps = 55/299 (18%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTD--------------VDDKIIARANELG 156
H+GHA ++ D + RY R GYEV ++ D K E
Sbjct: 16 HLGHALTHIIADFIARYKRMRGYEVPFLPG-WDTHGLPIELKAERKGGRKKKTIWIEEFR 74
Query: 157 EDPISLSRRYCEEFHQDM------VDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYR 210
EDP E +D D + EP + + + +++ + G YR
Sbjct: 75 EDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPE---YSKAVELIFSRLYEKGLIYR 131
Query: 211 VDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKK------NPADFALWKSAKEGE 264
V + F + + + L+ R G+ V + + + D+A+ +
Sbjct: 132 GTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQR---- 187
Query: 265 PFWESPWGPGRPGWHIE----CSAMSAAYLGHSF-----------DIHGGGMDLVFPHHE 309
WG P + LG+ D H G D++
Sbjct: 188 -----YWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWAN 242
Query: 310 NEIAQSCAACNNSHISYWIHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
I A + +GFV +KMSKS GN V+E Y ALR +L
Sbjct: 243 FWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLT 301
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 55.4 bits (134), Expect = 5e-08
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD---KIIARANELGEDPISLSRRYC 167
H+GH Y+ DV RYLR GYEV ++ T D+ KI +A + G P L +
Sbjct: 21 HLGHLYTYLAADVYARYLRLRGYEVFFL---TGTDEHGTKIELKAEKEGITPQELVDKNH 77
Query: 168 EEFHQDMVDLHC 179
EEF + L+
Sbjct: 78 EEFKELFKALNI 89
Score = 48.0 bits (115), Expect = 1e-05
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+GF+T++ +KMSKS GN +++E Y ALR +L
Sbjct: 324 HGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLA 361
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 54.5 bits (132), Expect = 9e-08
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 105 TPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD---KIIARANELGEDPIS 161
P HIGHA + DVL R+ R GY+V ++ T D+ KI +A E G P
Sbjct: 11 YPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFL---TGTDEHGQKIQRKAEEAGISPQE 67
Query: 162 LSRRYCEEFHQDMVDLHC 179
L+ R F + L+
Sbjct: 68 LADRNSAAFKRLWEALNI 85
Score = 38.3 bits (90), Expect = 0.009
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+GF+T+D EKMSKSLGN +++ Y A+R FL+
Sbjct: 290 HGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLL 327
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 54.1 bits (131), Expect = 2e-07
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369
NGFV ++ +KMSKS GN +R+ +E Y +RL+L +
Sbjct: 568 NGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSS 607
Score = 43.7 bits (104), Expect = 3e-04
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCY 137
H+GH R Y DV+ RY R GY V +
Sbjct: 2 HVGHGRTYTIGDVIARYKRMRGYNVLF 28
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 49.8 bits (120), Expect = 3e-06
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPISLSRRY 166
H+GH Y+ D+ RY R G+EV +V DD I+ +A + G P L RY
Sbjct: 18 HLGHLVEYIQADIWVRYQRMRGHEVLFVCA----DDAHGTPIMLKAEKEGITPEELIARY 73
Query: 167 CEEFHQDMVDLH 178
E +D
Sbjct: 74 HAEHKRDFAGFG 85
Score = 39.7 bits (94), Expect = 0.004
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366
+GF+T++ KMSKS G F R ++ P LR +L
Sbjct: 320 HGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYL 356
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 48.7 bits (117), Expect = 3e-06
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD---KIIARANELGEDPISLSRRYC 167
H+GH V DV RY R GY+V +V T D+ KI +A E G P L +Y
Sbjct: 16 HLGHLYGTVLADVFARYQRLRGYDVLFV---TGTDEHGTKIEQKAEEEGVTPQELCDKYH 72
Query: 168 EEF 170
E F
Sbjct: 73 EIF 75
Score = 42.5 bits (101), Expect = 3e-04
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+G++T++ +KMSKS GN ++E Y ALR +L+
Sbjct: 271 HGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLL 308
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 48.8 bits (117), Expect = 5e-06
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD---KIIARANELGEDPISLSRRYC 167
HIGH + DV RYLR GY+V +V T D+ KI A + G P +
Sbjct: 15 HIGHLYTTIPADVYARYLRLRGYDVLFV---TGTDEHGTKIELAAEKEGVTP----QELV 67
Query: 168 EEFHQ 172
+ +H+
Sbjct: 68 DRYHE 72
Score = 46.1 bits (110), Expect = 3e-05
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+G++T++ KMSKS GN ++++ Y ALR +L
Sbjct: 315 HGWLTVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLA 352
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 48.9 bits (117), Expect = 5e-06
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 100 YVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD---KIIARANELG 156
Y G H+GHA + DV RY R GYEV +V D+ KI +A + G
Sbjct: 9 YANGKP-----HLGHAYTTILADVYARYKRLRGYEVLFV---CGTDEHGTKIELKAEQEG 60
Query: 157 EDPISLSRRYCEEFHQD 173
P L +Y EEF D
Sbjct: 61 LTPKELVDKYHEEFKDD 77
Score = 35.8 bits (83), Expect = 0.068
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
G++T++ KMSKSLGN ++ + LR +L+
Sbjct: 319 GYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLL 355
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 48.1 bits (115), Expect = 1e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366
NG + ++SEKMSKS GNF T+RQ +E + A R L
Sbjct: 709 NGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFAL 745
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 46.5 bits (111), Expect = 2e-05
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 328 IHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
I G V ++ EKMSKS GN T + ++ Y A RL+++
Sbjct: 264 IVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYIL 303
Score = 42.2 bits (100), Expect = 5e-04
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+GH R Y D++ RY R GY V + F A ++G DP + ++
Sbjct: 16 HVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKM 75
Query: 171 HQDM 174
+ +
Sbjct: 76 KEQL 79
>gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 46.0 bits (110), Expect = 4e-05
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 332 FVTID-SEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
EK+SKS GN TI +E P +LRLF+
Sbjct: 272 LFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMF 308
Score = 30.9 bits (71), Expect = 1.8
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 86 RELVKPKVEGKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
+++K GK V G+ P L HIG+ R D++ R LR LG +
Sbjct: 13 EKIIKR--LGKKPPVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKT 62
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 45.1 bits (107), Expect = 9e-05
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 333 VTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYI 392
V + EKMSKS GN ++++E Y ALRLF++ + PI S+ ES E
Sbjct: 599 VYVGYEKMSKSKGNGIDPQEIVESYGADALRLFIM---FMGPIAASLEWNESGLEGARRF 655
Query: 393 YQTLHDCEKALSLLDAAALKDSIPPDTV--TSINKFHNDFLASMSDDLHTTVVL-AALSD 449
+ + ++ AA + H FL +++DL A+S
Sbjct: 656 LDRVWNLVYEITGELDAASLTVTALEEAQKELRRDVH-KFLKKVTEDLEKRESFNTAISA 714
Query: 450 PLKTINDLLHTRKGKKQAMRLESLAAL 476
++ +N L K KK+A+ LE L
Sbjct: 715 MMELLNKLY---KAKKEALMLEYLKGF 738
Score = 37.8 bits (88), Expect = 0.017
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 94 EGKVGMYVCGVTPYDLS--HIGHARVYVTFDVLYRYLRHLGYEV 135
K Y+ + PY H+GH R Y DVL RY R GY V
Sbjct: 26 SSKPKYYILSMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNV 69
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 42.9 bits (101), Expect = 4e-04
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYSVVQLESASER 388
NG+V ++ +KMSKS GN T+ Q +E + RL++ ++ ++E R
Sbjct: 611 NGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILR 670
Query: 389 IFYIYQ 394
+ +Y+
Sbjct: 671 LERLYE 676
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 42.0 bits (99), Expect = 7e-04
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 312 IAQSCAACNNSHISYWIHNGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369
I A ++ + +G V D + KMSKSLGN V++ Y ALRL+L +
Sbjct: 539 IVLGTALTGSAPYKNVLVHGLVR-DEQGRKMSKSLGNVIDPLDVIDKYGADALRLWLASS 597
Query: 370 HYRSPINYS 378
Y IN+S
Sbjct: 598 DYGRDINFS 606
>gnl|CDD|214848 smart00840, DALR_2, This DALR domain is found in
cysteinyl-tRNA-synthetases.
Length = 56
Score = 36.8 bits (86), Expect = 0.001
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 429 DFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLG 488
F +M DD +T LA L + + IN L E LAAL +R + VLG
Sbjct: 1 RFEEAMDDDFNTPEALAVLFELAREINRLALKATDA------EELAALAALLRALGGVLG 54
Query: 489 LM 490
L+
Sbjct: 55 LL 56
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 40.7 bits (96), Expect = 0.002
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEV 135
H+GH R Y DV+ RY R GY V
Sbjct: 50 HVGHVRNYTIGDVIARYKRMQGYNV 74
Score = 37.6 bits (88), Expect = 0.019
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 328 IHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366
I G V + EKMSKS GN + +E Y +RL++
Sbjct: 567 ITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYI 606
>gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 357
Score = 39.9 bits (94), Expect = 0.003
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 338 EKMSKSLGNFFTIRQVMELYHPLALRLFLIGT 369
KMS S GN TI +E P +LR +
Sbjct: 278 GKMSSSKGNVITIEDWLEYAPPESLRFLMFRV 309
Score = 30.3 bits (69), Expect = 2.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 86 RELVKPKVEGKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
+L+K + + G + G+ P L HIG+ R + D + R LR G+E
Sbjct: 9 EKLIKERGKK--GEILVETGIGPSGLPHIGNFREVLRTDAVRRALRKRGFET 58
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 40.0 bits (94), Expect = 0.003
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 332 FVTID-SEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
++ + KMS S GN ++ +E+ P LR +
Sbjct: 269 WILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIA 305
Score = 32.3 bits (74), Expect = 0.66
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 86 RELVKPKVEGKVGMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
+++++ + E + YV G++P L HIG+ R +T D + R LR G EV
Sbjct: 10 KKIIEERPEDE---YVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEV 58
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 39.8 bits (94), Expect = 0.003
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+ ++T++ K SKS G + +E Y P LR +L
Sbjct: 325 SEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLA 362
Score = 39.0 bits (92), Expect = 0.005
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 111 HIGH-ARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD----KIIARANELGEDPISLSRR 165
H+GH A + DV RY R G EV +V D I A + G P L+ +
Sbjct: 19 HLGHLAGSGLPADVFARYQRLKGNEVLFVSG----SDEHGTPIELAAKKEGVTPQELADK 74
Query: 166 YCEEFHQDMVDL 177
Y EE +D L
Sbjct: 75 YHEEHKEDFKKL 86
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I
lysyl tRNA synthetase. Class I lysyl tRNA synthetase
(LysRS) catalytic core domain. This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. The class I LysRS is found only in archaea and
some bacteria and has evolved separately from class II
LysRS, as the two do not share structural or sequence
similarity.
Length = 353
Score = 39.6 bits (93), Expect = 0.004
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 338 EKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
KMS S GN T +E+ P LR
Sbjct: 274 GKMSSSKGNVITPSDWLEVAPPEVLRYLYA 303
Score = 33.1 bits (76), Expect = 0.43
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 98 GMYVC--GVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
YV G++P HIG+ R +T D++ R LR LG+EV
Sbjct: 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEV 58
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 39.7 bits (94), Expect = 0.005
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 100 YVCGVTPY---DLSHIGHARVYVTFDVLYRYLRHLGYEV 135
YV + PY L H+GH R Y DV+ RY R GY V
Sbjct: 35 YVLDMFPYPSGGL-HMGHVRNYTIGDVIARYKRMQGYNV 72
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 39.0 bits (92), Expect = 0.007
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 111 HIGHARVYVTF--DVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPI 160
HIGHA Y T D L RY R GY+V ++ T D KI A + G+ P
Sbjct: 20 HIGHA--YTTIAADALARYKRLQGYDVFFL---TGTDEHGQKIQQAAEKAGKTPQ 69
Score = 35.2 bits (82), Expect = 0.10
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
G+ + KMSKS GN ++++ Y ALR +L+
Sbjct: 291 GWWLMKDGKMSKSKGNVVDPEELVDRYGLDALRYYLL 327
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 37.4 bits (88), Expect = 0.020
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 330 NGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+G V +D + KMSKSLGN+ +V + Y ALR +L+
Sbjct: 582 HGHV-LDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLL 620
>gnl|CDD|204161 pfam09190, DALR_2, DALR domain. This DALR domain is found in
cysteinyl-tRNA-synthetases.
Length = 62
Score = 33.3 bits (77), Expect = 0.022
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 429 DFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLG 488
F+ +M DD +T +A L + K IN + + + AAL +R + VLG
Sbjct: 1 RFIEAMDDDFNTPEAIAVLFELAKEIN--------RLKTTDGAAAAALAALLRALGGVLG 52
Query: 489 L 489
L
Sbjct: 53 L 53
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 36.0 bits (84), Expect = 0.033
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD-----KIIARANELGEDPISLSRR 165
H+GH R + D L R L LGY+V + ++D ++ + E + S +
Sbjct: 16 HVGHLRNAIIGDSLARILEFLGYDV-TREYY--INDWGRQIGLLILSLEKWRKLVEESIK 72
Query: 166 YCEEFHQDMVDLHCLPPSV-----EPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVD 220
D+ L E M ++++ + + G Y DG ++ +
Sbjct: 73 A------DLETYGRLDVRFDVWFGESSYLGLMGKVVEL---LEELGLLYEEDGALWLDLT 123
Query: 221 KF 222
+F
Sbjct: 124 EF 125
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 36.2 bits (84), Expect = 0.047
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 328 IHNGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESA 385
I +GF T+D + KMSKSLGN +V+ Y LRL++ + + +S L+
Sbjct: 599 ITHGF-TLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQV 657
Query: 386 SERIFYI 392
E+ I
Sbjct: 658 VEKYRKI 664
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 36.4 bits (85), Expect = 0.050
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 330 NGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYS 378
+GF +D + KMSKSLGN + V++ Y LRL++ + Y + +S
Sbjct: 592 HGF-VLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFS 641
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 36.1 bits (84), Expect = 0.050
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYV 138
H+GHA D++ RY R GY V +
Sbjct: 17 HMGHALNNTIQDIIARYKRMKGYNVLWP 44
Score = 33.8 bits (78), Expect = 0.21
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 336 DSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
D KMSKSLGN V++ Y ALR L
Sbjct: 340 DGRKMSKSLGNVIDPLDVIDGYGADALRFTLA 371
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 35.7 bits (83), Expect = 0.053
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 328 IHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
I +GFV D KMSKSLGN+ ++V++ Y ALRL++
Sbjct: 287 IVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVA 327
>gnl|CDD|216792 pfam01927, DUF82, Protein of unknown function DUF82. This
prokaryotic protein family has no known function. The
protein contains four conserved cysteines that may be
involved in metal binding or disulphide bridges.
Length = 146
Score = 34.2 bits (79), Expect = 0.073
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 124 LYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRY 166
L R+LR LGY+ Y +F DD+++A A + E I L+R
Sbjct: 12 LARWLRLLGYDTLYDNDFE--DDELLAIAAK--EGRILLTRDR 50
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 34.9 bits (81), Expect = 0.11
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 336 DSEKMSKSLGNFFTIRQVMELYHPLALRLFL-IGTHYRSPINYSVVQLESAS 386
KMSKS GN V++ Y ALR L IN+ ++E
Sbjct: 522 QGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYR 573
Score = 34.9 bits (81), Expect = 0.13
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCY 137
H+GHA Y D+L RY R GY V +
Sbjct: 49 HMGHALNYTLQDILARYKRMRGYNVLW 75
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 35.1 bits (81), Expect = 0.13
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 328 IHNGFVTI-DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLES 384
I NG V D +KMSKSL N+ +V++ Y ALRL+L IN VV+ E
Sbjct: 602 ICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYL--------INSPVVRAEP 651
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 34.5 bits (80), Expect = 0.16
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEV 135
HIGH R + D L R L LGY+V
Sbjct: 133 HIGHLRNAIIGDSLARILEFLGYDV 157
>gnl|CDD|199897 cd10911, LabA, LabA_like proteins. A well conserved group of
bacterial and archaeal proteins with no defined
function. LabA, a member from Synechococcus elongatus
PCC 7942, has been shown to play a role in
cyanobacterial circadian timing. It is required for
negative feedback regulation of the
autokinase/autophosphatase KaiC, a central component of
the circadian clock system. In particular, LabA seems
necessary for KaiC-dependent repression of gene
expression. LabA_like domains exhibit some similarity to
the NYN domain, a distant relative of the PIN-domain
nucleases.
Length = 155
Score = 32.5 bits (75), Expect = 0.27
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 114 HARVYVTFDVLYR--------YLRHLGYEVCY--VRNFTDVDDKIIARAN---ELGEDPI 160
A YV D Y +LR+ GYEV ++ F D D + A+ N EL D +
Sbjct: 40 RAFAYVGLDEEYDERQRGFLDWLRYNGYEVVTKPLKEFVDEDGRGSAKGNLDVELAVDAL 99
Query: 161 SLSRRY 166
L+
Sbjct: 100 LLADNL 105
>gnl|CDD|232987 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form a
separate orthologous set [Protein synthesis, tRNA
aminoacylation].
Length = 515
Score = 33.7 bits (77), Expect = 0.28
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 90 KPKVEGKVGMYV--CGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV--CYVRNFTDVD 145
K K E +Y G+TP HIG+ R +T D + R LR G E Y+ + D
Sbjct: 10 KLKKEKPKNLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPL 69
Query: 146 DKIIARANELGEDPI--SLSRRYCEEFHQDMVDLHCLPPSVE 185
K+ E E + L+R E + H L P +E
Sbjct: 70 RKVYPFLPEELETYLGMPLTRIPDPEGCKTSYAEHFLIPFLE 111
Score = 33.0 bits (75), Expect = 0.43
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 327 WIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINY-----SVVQ 381
WI + KMS S G+ +++ V+E+Y P R T I++ + +
Sbjct: 265 WIS---LKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEFHISFDLDVIKLYE 321
Query: 382 LESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKF-HNDFLASMSDDLHT 440
ER +Y + D EK + L +P + + F H ++ + ++
Sbjct: 322 DYDKFERFYYGVKDK-DEEKKRAFKRIYELSQPMPSERIPYQVPFRHLSVISQIFENNDI 380
Query: 441 TVVLAALSDPLKTIND 456
+L L T++D
Sbjct: 381 EKILEILKRVQYTVDD 396
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 33.6 bits (78), Expect = 0.31
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEV 135
H+GH R V D L R L GY+V
Sbjct: 127 HVGHLRSAVIGDALARILEFAGYDV 151
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 33.5 bits (77), Expect = 0.34
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 336 DSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYR-SPINYSVVQLESAS 386
KMSKSLGN V+E Y ALR L IN+ ++ESA
Sbjct: 522 QGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESAR 573
Score = 28.9 bits (65), Expect = 9.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCY 137
HIGHA + D++ RY R GY V +
Sbjct: 49 HIGHALNWSIQDIIARYKRMKGYNVLW 75
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 33.2 bits (77), Expect = 0.38
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCY 137
HIGH Y D + RY R GY V +
Sbjct: 54 HIGHVFSYTHTDFIARYQRMRGYNVFF 80
Score = 30.2 bits (69), Expect = 3.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 336 DSEKMSKSLGNFFTIRQVMELYHPLALRL 364
D +KMSKS GN T +++E Y A+R
Sbjct: 530 DGKKMSKSKGNVVTPEELLEKYGADAVRY 558
>gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate
dehydrogenase; Provisional.
Length = 296
Score = 32.5 bits (74), Expect = 0.49
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 534 KSDAIRKDLAAVGIALMDSPVGTT 557
++D + D+ A G ++MD PVG T
Sbjct: 101 QTDKLIADMQAKGFSMMDVPVGRT 124
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 32.4 bits (73), Expect = 0.74
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+GF+T D KM KSLGN ++++ + P A+R F +
Sbjct: 357 HGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFL 394
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 32.0 bits (73), Expect = 0.79
Identities = 18/96 (18%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 449 DPLKTIND-LLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALK 507
+ K + K +++ + +++ LE + + ++ E L +L+E +
Sbjct: 109 EADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVL-----ERLEELKELQSR 163
Query: 508 RADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLA 543
RAD+ + +L+ + R + +E E+ +A+ K L+
Sbjct: 164 RADVDVNSMLEALFRREKKEEEEEEEEDEALIKSLS 199
>gnl|CDD|224570 COG1656, COG1656, Uncharacterized conserved protein [Function
unknown].
Length = 165
Score = 30.5 bits (69), Expect = 1.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 124 LYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYC 167
L R+LR LGY+ Y N + DD+II A E I L+R
Sbjct: 18 LARWLRLLGYDTVYSSNES--DDEIILIA--KKEGRILLTRDRE 57
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 31.5 bits (72), Expect = 1.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEV 135
HIGH R + D L R L LGY+V
Sbjct: 128 HIGHLRNAIIGDSLARILEFLGYDV 152
>gnl|CDD|188163 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase,
single chain form. This model represents a
single-molecule form of
phosphoribosylformylglycinamidine synthase, also called
FGAM synthase, an enzyme of purine de novo biosynthesis.
This form is found mostly in eukaryotes and
Proteobacteria. In Bacillus subtilis PurL (FGAM synthase
II) and PurQ (FGAM synthase I), homologous to different
parts of this model, perform the equivalent function;
the unrelated small protein PurS is also required and
may be a third subunit [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 1310
Score = 31.3 bits (71), Expect = 1.6
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 312 IAQSCAACNNSHISYWIHNGFVTIDSEKMSKSL 344
AQ+ N+ H + I N ID +K KSL
Sbjct: 209 FAQA----NSEHCRHKIFNADWIIDGKKQDKSL 237
>gnl|CDD|219337 pfam07217, Het-C, Heterokaryon incompatibility protein Het-C. In
filamentous fungi, het loci (for heterokaryon
incompatibility) are believed to regulate
self/nonself-recognition during vegetative growth. As
filamentous fungi grow, hyphal fusion occurs within an
individual colony to form a network. Hyphal fusion can
occur also between different individuals to form a
heterokaryon, in which genetically distinct nuclei
occupy a common cytoplasm. However, heterokaryotic cells
are viable only if the individuals involved have
identical alleles at all het loci.
Length = 602
Score = 31.2 bits (71), Expect = 1.8
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 21/66 (31%)
Query: 449 DPLKTINDLLHTRKGKK-------------------QAMRLESLAALEK-TIRNVLTVLG 488
D L TI GKK QA+ + +L + TIR ++ VL
Sbjct: 49 DMLLTIA-FARVGGGKKFTKLDVKRVYFGNWLRDYSQAVDVGTLKGVSAETIRILVWVLS 107
Query: 489 LMSTGY 494
+S GY
Sbjct: 108 FLSFGY 113
>gnl|CDD|129386 TIGR00285, TIGR00285, DNA-binding protein Alba. Alba has been
shown to bind DNA and affect DNA supercoiling in a
temperature dependent manner. It is regulated by
acetylation (alba = acetylation lowers binding affinity)
by the Sir2 protein. Alba is proposed to play a role in
establishment or maintenace of chromatin architecture
and thereby in transcription repression. This protein
appears so far only in the Archaea, but may be universal
there. There is a single member in three of the first
four completed archaeal genomes, and a second copy in A.
fulgidus. In Sulfolobus shibatae there is a tandem
second copy that is poorly conserved and scores below
the trusted cutoff; all other members of the family are
conserved at greater than 50 % pairwise identity [DNA
metabolism, Chromosome-associated proteins].
Length = 87
Score = 28.6 bits (64), Expect = 2.0
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 483 VLTVLGLMSTGYSEVLLQLREKALKRA-DLTE---DQVLQRIEDRTVARKNKEYEKSDAI 538
VL VL +++G EV+++ R +A+ RA D+ E ++ + I+ + + +E +
Sbjct: 15 VLAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKSEQGR 74
Query: 539 RKDLAAVGIAL 549
+++ + I L
Sbjct: 75 EVNVSTIEIVL 85
>gnl|CDD|224526 COG1610, COG1610, Uncharacterized conserved protein [Function
unknown].
Length = 148
Score = 29.6 bits (67), Expect = 2.2
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 25/87 (28%)
Query: 465 KQAMRLESLAALEK----TIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRI 520
K+AM+ A +K TIR +L + + E ++ +L ++++L+ +
Sbjct: 12 KEAMK-----AKDKDRLGTIRLILAAI------------KQEEIDERKDELDDEEILKVL 54
Query: 521 EDRTVARKN--KEYEKSDAIRKDLAAV 545
R++ +EYEK A R+DLAA
Sbjct: 55 AKEIKQRRDSAEEYEK--AGRQDLAAK 79
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 30.7 bits (70), Expect = 2.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYV 138
HIGHA D L RY R G E +V
Sbjct: 76 HIGHALTGAIQDSLIRYHRMKGDETLWV 103
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 30.6 bits (69), Expect = 2.6
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 86 RELVKPKVEGKVGMYVCGVTPYDLS---HIGHARVYVTFDVLYRYLRHLGYEV 135
+ KPK YV + PY H+GH Y D+L RY R GY V
Sbjct: 105 VDTSKPK------FYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNV 151
>gnl|CDD|176915 cd08906, START_STARD3-like, Cholesterol-binding START domain of
mammalian STARD3 and related proteins. This subgroup
includes the steroidogenic acute regulatory protein
(StAR)-related lipid transfer (START) domains of STARD3
(also known as metastatic lymph node 64/MLN64) and
related proteins. It belongs to the START domain family,
and in turn to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket. STARD3 has a high affinity for cholesterol. It
may function in trafficking endosomal cholesterol to a
cytosolic acceptor or membrane. In addition to having a
cytoplasmic START cholesterol-binding domain, STARD3
also contains an N-terminal MENTAL cholesterol-binding
and protein-protein interaction domain. The MENTAL
domain contains transmembrane helices and anchors MLN64
to endosome membranes. The gene encoding STARD3 is
overexpressed in about 25% of breast cancers.
Length = 209
Score = 29.8 bits (67), Expect = 2.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 491 STGYSEVLLQLREKALKRADLTEDQVLQRIEDRTV 525
Y EV+LQ + L ++ QVLQR++D T+
Sbjct: 62 ELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTL 96
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 30.6 bits (69), Expect = 3.2
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 369 THYRSPIN-YSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFH 427
+ SP V+ +++ IFYIY D AL L +
Sbjct: 906 ANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT------------- 952
Query: 428 NDFLASMSDDLHTTVVLAALSDPLKTINDL 457
L ++S LH ++ + L P+ +N +
Sbjct: 953 ---LLTVSKRLHEQMLHSVLQAPMAVLNTM 979
>gnl|CDD|223007 PHA03187, PHA03187, UL14 tegument protein; Provisional.
Length = 322
Score = 30.0 bits (67), Expect = 3.3
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 14/85 (16%)
Query: 122 DVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGE-------DPISLSRRYCEEF--HQ 172
++L R+ R L + ++ F +D I+ R LG+ D +E+ H+
Sbjct: 89 EILDRHRRFLHPD--FIDKFDSREDSIVEREERLGDVLSDINCDGGGGEVGDPQEWLGHE 146
Query: 173 DMVDLHCLPPSVEPRVSDHM---PH 194
D L PRVS + PH
Sbjct: 147 DEALLMRWMLEEAPRVSTRIAQDPH 171
>gnl|CDD|204272 pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) is a widespread family of prokaryotic direct
repeats with spacers of unique sequence between
consecutive repeats. This protein family, typified by
YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas)
family strictly associated with the Ypest subtype of
CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas
Subtype Ypest protein 4.
Length = 182
Score = 29.5 bits (67), Expect = 3.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 501 LREKALKRADLTEDQVLQRIEDRTVARKN 529
LR + +KRA LTE++ RI R +
Sbjct: 107 LRRRLMKRAGLTEEEARARIPKSLEKRLD 135
>gnl|CDD|198323 cd10290, GST_C_MetRS_N_fungi, Glutathione S-transferase
C-terminal-like, alpha helical domain of
Saccharomycetales Methionyl-tRNA synthetase.
Glutathione S-transferase (GST) C-terminal domain
family, Saccharomycetales Methionyl-tRNA synthetase
(MetRS) subfamily; This model characterizes the
GST_C-like domain found in the N-terminal region of
Saccharomycetales MetRS. Aminoacyl-tRNA synthetases
(aaRSs) comprise a family of enzymes that catalyze the
coupling of amino acids with their matching tRNAs. This
involves the formation of an aminoacyl adenylate using
ATP, followed by the transfer of the activated amino
acid to the 3'-adenosine moiety of the tRNA. AaRSs may
also be involved in translational and transcriptional
regulation, as well as in tRNA processing. MetRS is a
class I aaRS, containing a Rossman fold catalytic core.
It recognizes the initiator tRNA as well as the Met-tRNA
for protein chain elongation. The GST_C-like domain of
MetRS from Saccharomycetales is involved in
protein-protein interactions, to mediate the formation
of the the MetRS-Arc1p-GluRS ternary complex which is
considered an evolutionary intermediate between
prokaryotic aaRS and the multi-aaRS complex found in
higher eukaryotes. AaRSs from prokaryotes, which are
active as dimers, do not contain this GST_C-like domain.
Length = 95
Score = 28.2 bits (63), Expect = 4.0
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 394 QTLHDCEKALSLLDAAALKDSIPPDTVT-SINKFHNDFLASMSDDLHTT 441
Q + + ALS L+A P+ + K ++L S+ + L T
Sbjct: 14 QQSDEYQYALSSLEALLYHKDTLPEHAKELVTKSLENYLVSLEEPLTAT 62
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 30.1 bits (69), Expect = 4.3
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 331 GFVTIDSE--KMSKSLGN 346
GF T+D + KMSKSLGN
Sbjct: 583 GF-TVDGKGRKMSKSLGN 599
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 29.7 bits (67), Expect = 5.2
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 328 IHNGFVTIDSE--KMSKSLGNFFTIRQVME 355
+ +GFV +D + KMSKSLGN R V+E
Sbjct: 599 LTHGFV-LDEKGFKMSKSLGNVVDPRLVIE 627
>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1307
Score = 29.7 bits (67), Expect = 5.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 311 EIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSL 344
+IAQS N+ H +W +G + ID + M K+L
Sbjct: 205 DIAQS----NSEHSRHWFFSGKLVIDGQPMPKTL 234
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 29.2 bits (66), Expect = 6.0
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 24/103 (23%)
Query: 111 HIGHARVYVTFDVLYRYL--RHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCE 168
HIGHAR L+ YL ++ + +R DD R E+ I
Sbjct: 15 HIGHART-----ALFNYLFAKNYNGK-FILR----FDDTDPEREKPEYEESI-------- 56
Query: 169 EFHQDMVDLHCLPPSVEP-RVSDHMPHIIDMITQILDNGFAYR 210
+ + + +P SD ++++ G AY
Sbjct: 57 ---LEDLKWLGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYV 96
>gnl|CDD|235180 PRK03954, PRK03954, ribonuclease P protein component 4; Validated.
Length = 121
Score = 27.9 bits (62), Expect = 6.1
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 12/55 (21%)
Query: 159 PISLSRRYCEEFHQDMVDLHCLPPSVEPRV---SDHMPHIIDMITQILDNGFAYR 210
P RRYC+ H +V P V RV MPH+ + L+ G R
Sbjct: 59 PRKWKRRYCKRCHSFLV------PGVNARVRLRQKRMPHV---VITCLECGHIMR 104
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 29.5 bits (67), Expect = 6.2
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 331 GFVTIDS--EKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHY 371
GF T+D EKMSKSLGN + + V++ LRL++ Y
Sbjct: 621 GF-TLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASVDY 662
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 28.9 bits (66), Expect = 8.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 10/33 (30%)
Query: 111 HIGHARVYVTF-----DVLYRYLRHLGYEVCYV 138
H+GHA D+L RY R GY ++
Sbjct: 52 HMGHA-----LNNTLQDILIRYKRMQGYNTLWL 79
>gnl|CDD|236050 PRK07564, PRK07564, phosphoglucomutase; Validated.
Length = 543
Score = 28.9 bits (66), Expect = 8.4
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 142 TDVDDKIIARANELGEDPISLSRR--YCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI 199
TDV D I ARANEL + +R V++ V V D + ++ D
Sbjct: 165 TDVTDAIEARANELLAYGLKGVKRIPLDRALASMTVEVIDP---VADYVED-LENVFDF- 219
Query: 200 TQILDNGFAYRVD 212
I G VD
Sbjct: 220 DAIRKAGLRLGVD 232
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 28.7 bits (65), Expect = 9.6
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 517 LQRIEDRTVARKNKEYEKSDAIRKDLAAVGI 547
+ RI+D + R +EY DAI +DL +GI
Sbjct: 38 ILRIDDTDLERSKQEYA--DAIAEDLKWLGI 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,627,175
Number of extensions: 2930753
Number of successful extensions: 2875
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2819
Number of HSP's successfully gapped: 110
Length of query: 574
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 472
Effective length of database: 6,413,494
Effective search space: 3027169168
Effective search space used: 3027169168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)