RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008191
(574 letters)
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 748 bits (1934), Expect = 0.0
Identities = 213/485 (43%), Positives = 285/485 (58%), Gaps = 28/485 (5%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L ++NT++R++E KP G+VGMYVCG+T YDL HIGH R +V FDV+ RYLR LGY++
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKII RANE GE +++ R E H+D L+ L P +EPR + H+ I
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I++ Q++ G AY D GDV F V P YG LS + L+ +AG RV V K+NP DF
Sbjct: 122 IELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +KEGEP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S A + +++YW+H+G V +D EKMSKSLGNFFT+R V++ Y +R FL+ HYRS
Sbjct: 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQ 301
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
+NYS L+ A + +Y L +K ++ F F+ +M
Sbjct: 302 LNYSEENLKQARAALERLYTALRGTDKTVAPAGG---------------EAFEARFIEAM 346
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + L D + +N L + A+ +R + VLGL+
Sbjct: 347 DDDFNTPEAYSVLFDMAREVNRLKAEDM--------AAANAMASHLRKLSAVLGLLEQEP 398
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
L + + D ++ I+ R ARK K++ +DA R L +GI L D P
Sbjct: 399 EAFL----QSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQ 454
Query: 555 GTTWR 559
GTTWR
Sbjct: 455 GTTWR 459
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 745 bits (1927), Expect = 0.0
Identities = 195/485 (40%), Positives = 285/485 (58%), Gaps = 30/485 (6%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
+ ++N++++++E+ KP GKV +YVCG+T YD HIGH R ++ FD++ RYLR GYEV
Sbjct: 5 VKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEV 64
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
+VRN TD+DDKII RA E E P +L+ R+ + H+D L L P EPR + ++P I
Sbjct: 65 TFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEI 124
Query: 196 IDMITQILDNGFAYR-VDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I +I ++LDN +AY +GDV+F V +F +YG+LS R L++ +AG RV V K++P DF
Sbjct: 125 IKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDF 184
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK AK GEP W+SPWG GRPGWHIECSAMS++ LG FDIHGGG+DL FPHHENEIAQ
Sbjct: 185 VLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQ 244
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S A + W+H G + I+ EKMSKSLGN +IR+ ++ LR FL+ HYR+P
Sbjct: 245 SEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNP 304
Query: 375 INYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHNDFLASM 434
++YS LE+ + Y L +P + + + F +M
Sbjct: 305 LSYSKENLENGRLALERFYLALRG----------------LPVVNHEKTSSYTDRFYEAM 348
Query: 435 SDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVLGLMSTGY 494
DD +T + A L + ++ IN + +K A L ++ + + GL+
Sbjct: 349 DDDFNTPIAFALLFEMVREINRFRDNNQIEK-------AAVLAAELKCLGNIFGLLQYSP 401
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPV 554
+ L + + ++ + I+ R AR K+++ +D IR L +G+A+ DS
Sbjct: 402 EQFLQG------AKKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSD 455
Query: 555 GTTWR 559
GT+WR
Sbjct: 456 GTSWR 460
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 710 bits (1835), Expect = 0.0
Identities = 141/499 (28%), Positives = 237/499 (47%), Gaps = 38/499 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L LYNT ++ + V +Y CG T Y+ +HIG+ R Y+ D+L + LR LGY+V
Sbjct: 24 LKLYNTRTKDFSELTNF--ENVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKV 81
Query: 136 CYVRNFTDV----------DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVE 185
Y N TD+ +DK+ A E G +S + E F D L+ + P
Sbjct: 82 NYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKV 141
Query: 186 PRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLED-NRAGERVAV 244
S H+P +I+++ + + Y +G+VYF F YG+++G L D + RV V
Sbjct: 142 LVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDV 201
Query: 245 DSRKKNPADFALW---KSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGM 301
D K+N DF LW K+ E W+SPWG G P WH+EC+AM+ Y + DIH GG+
Sbjct: 202 DKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGV 261
Query: 302 DLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME-LYHPL 360
D + HH NEIA + N ++H F+ +D KMSKS GNF T++ + + + PL
Sbjct: 262 DHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPL 321
Query: 361 ALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTV 420
R + +HYR+ + +S+ L+++ + L ++L +D L +
Sbjct: 322 DFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLKNFGF 381
Query: 421 TSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTI 480
+ ++++ F+ +S DL+ LA L + +K+ N +
Sbjct: 382 SVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN-----LSFVSKLRLAFIFDE----- 431
Query: 481 RNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRK 540
++ L + ++ + + ++ + IE+R +A+ K ++++D IR
Sbjct: 432 -----IMSL------NLREEILKNLQNHDVVIDENMKALIEERRIAKCEKNFKRADEIRD 480
Query: 541 DLAAVGIALMDSPVGTTWR 559
A G L+D+ GT +
Sbjct: 481 FFAKKGFVLVDTKEGTKVK 499
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 592 bits (1528), Expect = 0.0
Identities = 133/411 (32%), Positives = 196/411 (47%), Gaps = 32/411 (7%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L L+++ R+ V P MYVCG+TPYD +H+GHA Y+TFD+++R G+ V
Sbjct: 21 LRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTV 78
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YV+N TDVDD + RA G D +L R + F +DM L LPP +D + +
Sbjct: 79 QYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEV 138
Query: 196 IDMITQILDNGFAYRVDG----DVYFSVDKFPEYGQLSGRKLEDNRAGERVAVD----SR 247
++M+ ++L +G AY V+ DVYF D ++G SG +
Sbjct: 139 VEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPG 198
Query: 248 KKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPH 307
K + D LW++ + GEP W SP+G GRPGWH+ECSA++ +G DI GGG DL+FPH
Sbjct: 199 KSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPH 258
Query: 308 HENEIAQSCAACNNSHIS-YWIHNGFVTIDSEKMSKSLGNFFTIRQVM-ELYHPLALRLF 365
HE A + + + +++H G + D KMSKS GN + Q+ + P A+RL
Sbjct: 259 HEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLG 318
Query: 366 LIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINK 425
L HYR +S L+ A+ R+ A +L +A D
Sbjct: 319 LFSGHYREDRFWSNEVLDEANARLARWRS-------ATALPEAPDATD------------ 359
Query: 426 FHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAAL 476
++DDL T LAAL + + ++ AL
Sbjct: 360 VIARVRQYLADDLDTPKALAALDGWCTDALSYGGHDTESPRLVA-TTVDAL 409
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 1e-10
Identities = 70/448 (15%), Positives = 136/448 (30%), Gaps = 151/448 (33%)
Query: 81 TMSRKRELVKPKVEGKVGMYVCGVTPYDLSH---------IGHARVYVTF------DVLY 125
T+ + +EL+K + ++ P+D G+A++ F D +
Sbjct: 115 TLVKTKELIKNYITARI----MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 126 RYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC------ 179
LR L Y+ Y V D I A L + + E+ +++
Sbjct: 171 EELRDL-YQT-Y---HVLVGDLIKFSAETL--SELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 180 LPPSVE-----PRVSDHMPHIIDMITQILDNGFAYRVDGDVY-FSVDKFPEYGQ-LSGRK 232
P + P +S P I + Q+ Y V + F+ + Y + +G
Sbjct: 224 NTPDKDYLLSIP-IS--CPLI--GVIQLA----HYVVTAKLLGFTPGELRSYLKGATGH- 273
Query: 233 LEDNRAGERV-------AVDSRKKNPADFALWKSAKEGEP------FWESPWGPGRPGWH 279
+ + DS W+S F+ G
Sbjct: 274 ------SQGLVTAVAIAETDS----------WESFFVSVRKAITVLFFI--------GV- 308
Query: 280 IEC------SAMSAAYLGHSFDIHGGG----M----DLVFPHHENEIAQSCAAC-NNSHI 324
C +++ + L S + + G M +L ++ + ++ + +
Sbjct: 309 -RCYEAYPNTSLPPSILEDSLE-NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 325 SYWIHNG---FV-----------TIDSEKMSKSLGNF-----FTIRQVMELYHPLALRLF 365
+ NG V + K G F+ R++ + R F
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL-----KFSNR-F 420
Query: 366 L-IGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLDAAALKDSIP-PDTVTSI 423
L + + + S + L AS+ I D K +A ++ IP DT
Sbjct: 421 LPVASPFHSHL------LVPASDLI------NKDLVKNNVSFNAKDIQ--IPVYDTFDGS 466
Query: 424 NKFHNDFLASMSDDLHTTVVLAALSDPL 451
+ L +S + +V + P+
Sbjct: 467 D------LRVLSGSISERIVDCIIRLPV 488
Score = 56.2 bits (135), Expect = 3e-08
Identities = 91/535 (17%), Positives = 172/535 (32%), Gaps = 154/535 (28%)
Query: 106 PYDLSHIGHARVYVTFDV---LYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISL 162
P LSH G V + L E + + + + A +E P L
Sbjct: 8 PLTLSH-GSLEH--VLLVPTASFFIASQL-QE-QFNKILPEPTEGF-AADDEP-TTPAEL 60
Query: 163 SRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKF 222
++ L + VEP ++++ +N + D++ K
Sbjct: 61 VGKF----------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE--GNDIHALAAKL 108
Query: 223 PEYGQLSGRKLEDN-----RAGERVAVDSRKKNPADFALWKSAKEG-------------- 263
+ + K ++ A R+ ++ AL+++ EG
Sbjct: 109 LQENDTTLVKTKELIKNYITA--RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 264 EPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHE--NEIAQSCAACNN 321
+ ++E E + Y H + DL+ E +E+ ++
Sbjct: 167 DDYFE------------ELRDLYQTY--HVL-VG----DLIKFSAETLSELIRTTLDAEK 207
Query: 322 SH-----ISYWIHNGFVTIDSEKMSKS-----------LGNFFTIRQVMELYHPLALRLF 365
I W+ N T D + + L ++ +++ + P LR +
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSY 266
Query: 366 LIG-THYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLL--------DAAALKDSIP 416
L G T + + +V E+ S F+ KA+++L +A S+P
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFF-----VSVRKAITVLFFIGVRCYEAYPNT-SLP 320
Query: 417 PDTVT-SINKFHNDFLAS-MSDDLHTTVVLAALSDPLKTINDLL-HTRKGKKQAMRLESL 473
P + S+ +N+ + S M L+ + + + D + T ++E
Sbjct: 321 PSILEDSLE--NNEGVPSPM---------LSISNLTQEQVQDYVNKTNSHLPAGKQVE-- 367
Query: 474 AALEKTIRNVLTVLGLMSTGYSEVL----LQLREKALKRADLTEDQVLQRIEDRTVARKN 529
+L +N+ V+ +G + L L LR+ +A DQ RI RK
Sbjct: 368 ISLVNGAKNL--VV----SGPPQSLYGLNLTLRK---AKAPSGLDQ--SRIPFS--ERKL 414
Query: 530 K--------------EY--EKSDAIRKDLAAVGIAL----MDSPV-----GTTWR 559
K SD I KDL ++ + PV G+ R
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Score = 40.4 bits (94), Expect = 0.002
Identities = 38/256 (14%), Positives = 81/256 (31%), Gaps = 70/256 (27%)
Query: 360 LALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDC---------------EKALS 404
+ R + +H + + + F+I L + ++ +
Sbjct: 4 YSTRPLTL-SH--GSLEHVL----LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 405 LLDAAA-----LKDSIPPDTVTS--------INKFHNDFLASMSDDLHTTVV-LAALSD- 449
+ + + P V + +F N +L +D+H L +D
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE--GNDIHALAAKLLQENDT 114
Query: 450 PLKTINDLL----HTRKGKKQAMRLESLAALEKTIR----NVLTVLGLMSTGYSEVLLQ- 500
L +L+ R K+ +S +AL + + ++ + G G ++ +
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQGNTDDYFEE 172
Query: 501 LRE-----KALKRADLTE--DQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIA----- 548
LR+ L DL + + L + RT K + + I + L
Sbjct: 173 LRDLYQTYHVLVG-DLIKFSAETLSELI-RTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 549 LMDSPVGTTWRPALPL 564
L+ P+ + PL
Sbjct: 231 LLSIPI------SCPL 240
Score = 40.4 bits (94), Expect = 0.002
Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 111/300 (37%)
Query: 298 GGGMDLVFPHHENEIAQSC--AACNNSHISYWIHNGFVTID-SEKMSKSLGNFFTI---R 351
G GMDL + ++ AQ A N+ +Y GF +D +L F +
Sbjct: 1630 GMGMDL---YKTSKAAQDVWNRADNHFKDTY----GFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 352 QVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEK---------A 402
++ E Y + + G I + E ++ F + A
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEIN--EHSTSYTFR-----SEKGLLSATQFTQPA 1735
Query: 403 LSLLDAAALKD-----SIPPDTVTSINKFHNDF----------LASMSDDLHTTVVLAAL 447
L+L++ AA +D IP D F LAS++D V++ +
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADAT---------FAGHSLGEYAALASLAD------VMS-I 1779
Query: 448 SDPLKTINDLLHTRKGK--KQAM-RLE------SLAAL----------EKTIRNVLTVLG 488
++ ++ R G + A+ R E + A+ ++ ++ V+ +G
Sbjct: 1780 ESLVE----VVFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 489 LMSTGY--------------------------SEVLLQLREKALKRADLTEDQVLQRIED 522
TG+ + VL ++ + + +L + L+ +E
Sbjct: 1835 -KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 39.6 bits (92), Expect = 0.003
Identities = 46/257 (17%), Positives = 77/257 (29%), Gaps = 80/257 (31%)
Query: 40 RVFRCFSTLNSSPNVIDDKSNGKTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGM 99
R + + + P++++D + P+ M L + +V+ V
Sbjct: 309 RCYEAYPNTSLPPSILEDSLEN---NEGVPSP----------MLSISNLTQEQVQDYVN- 354
Query: 100 YVCGVTPYDLSHI------GHARVYVTFDV------LYRYLRHLGYEVCYVRNFTDVDDK 147
P + G A+ V V LY L R
Sbjct: 355 KTNSHLPAG-KQVEISLVNG-AKNLV---VSGPPQSLYGLNLTL-------RKAKAPSGL 402
Query: 148 IIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGF 207
+R E + S R+ LP + P S + D+I + L
Sbjct: 403 DQSRI-PFSERKLKFSNRF-------------LPVAS-PFHSHLLVPASDLINKDL---- 443
Query: 208 AYRVDGDVYFSVD--KFPEYGQLSG---RKLEDNRAGERVAVDSRKKNPADFALWKSAKE 262
V +V F+ + P Y G R L + ER+ VD + P W++ +
Sbjct: 444 ---VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS-ISERI-VDCIIRLPVK---WETTTQ 495
Query: 263 GEP-----FWESPWGPG 274
+ F GPG
Sbjct: 496 FKATHILDF-----GPG 507
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 59.6 bits (144), Expect = 2e-09
Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 34/249 (13%)
Query: 261 KEGEPFWE----SPWGPGRPGWHIECSAMSAAYLGHSF---------DIHGGGMDLVFPH 307
K F++ + + + + + A + D G DL+ H
Sbjct: 558 KLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNH 617
Query: 308 HENEIAQSCAACNNSHISYWI-HNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFL 366
I A H I NGF T++ +KMSKS GN +E +RL++
Sbjct: 618 LTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYI 677
Query: 367 I-GTHYRSPINYSVVQLESASERIFYIYQTLHDCEKA-------LSLLDAAALKDSIPPD 418
+ + S ++ ++ ++I Y+ + + L +D L
Sbjct: 678 MSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLH-----R 732
Query: 419 TVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEK 478
+I + N ++ T + + +NDL + + L
Sbjct: 733 LNKAIKETTNAL-----EEFRTRTAVQWAFYSI--MNDLRWYLRRTEGRDDEAKRYVLRT 785
Query: 479 TIRNVLTVL 487
+ ++
Sbjct: 786 LADVWVRLM 794
Score = 36.9 bits (85), Expect = 0.018
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYV 138
H+GHAR Y DV+ R+ R GY V +
Sbjct: 50 HVGHARTYTIPDVIARFKRMQGYNVLFP 77
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 53.4 bits (128), Expect = 1e-07
Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 20/167 (11%)
Query: 329 HNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYSVVQLESASE 387
NGF T++ +KMSKS GN +E +RL+++ + S ++ ++ +
Sbjct: 640 VNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRK 699
Query: 388 RIFYIYQTLHDCEKA-------LSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHT 440
+I Y+ + + L +D L +I + N ++ T
Sbjct: 700 QIERFYELISQFAEYEVKGNVELKDIDRWMLH-----RLNKAIKETTNAL-----EEFRT 749
Query: 441 TVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALEKTIRNVLTVL 487
+ + +NDL + + L + ++
Sbjct: 750 RTAVQWAFYSI--MNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLM 794
Score = 37.2 bits (86), Expect = 0.017
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCY 137
H+GHAR Y DV+ R+ R GY V +
Sbjct: 50 HVGHARTYTIPDVIARFKRMQGYNVLF 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 8e-07
Identities = 64/458 (13%), Positives = 131/458 (28%), Gaps = 122/458 (26%)
Query: 154 ELGEDPISLSRRYCEEFHQDMV-DLHC------LPPSVEPRVSDH---MPHIIDMITQIL 203
E GE + F V + C + DH + ++
Sbjct: 10 ETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 204 DNGFAYRVDGDVYFSVDKF-PEYGQLSGR-KLEDNRAGERVAVDSRKKNPADFALWKSAK 261
+ + + F + Y L K E + + +++ L+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR----LYND-- 122
Query: 262 EGEPFWESPWGPGRPGWHIE-----CSAMSAAYLGHSFDIHG-GGMD---LVFPHHENEI 312
+ F + + R +++ A + I G G +
Sbjct: 123 -NQVF--AKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVA-------- 167
Query: 313 AQSCAA-----CNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRL--- 364
C + + I +W+ +L N + V+E+ L ++
Sbjct: 168 LDVCLSYKVQCKMDFKI-FWL--------------NLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 365 FLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEKALSLLD----AAALK-------- 412
+ + + S I + +++ R+ E L +L A A
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 413 ----------DSIPPDTVTSINKFHND--------------FLASMSDDL---------- 438
D + T T I+ H+ +L DL
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 439 HTTVVLAALSDPLKTINDLLHTRKGKKQAMRLESLAALE-KTIRNVLTVLGLM--STGYS 495
+++ ++ D L T ++ H K + SL LE R + L + S
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 496 EVLLQLREKALKRADLTEDQVLQRIEDRT-VARKNKEY 532
+LL L + ++D V+ ++ + V ++ KE
Sbjct: 389 TILLSLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKES 424
Score = 47.9 bits (113), Expect = 8e-06
Identities = 79/493 (16%), Positives = 150/493 (30%), Gaps = 143/493 (29%)
Query: 37 NNRRVF-----RCFST------LNSSPNVIDDKSNGKTDGDDKPASASTQLWLYNTMSRK 85
+ ++F C S L ID ++D S++ +L +++ +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-----SSNIKLRIHSIQAEL 234
Query: 86 RELVKPKVEGKVGMYVCGVTPY-----DLSHIGHARVYVTFDVLYRYL---RHLGYEVCY 137
R L+K K PY L ++ +A+ + F++ + L R
Sbjct: 235 RRLLKSK-------------PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF------- 274
Query: 138 VRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDL--HCLPPSVEPRVSDHMPHI 195
+ TD L ++L+ + +D LP V P
Sbjct: 275 -KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPRR 329
Query: 196 IDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLE--DNRAG-ERVAV---DSRKK 249
+ +I + + +G A D + + DK + S LE + R +R++V +
Sbjct: 330 LSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--H 386
Query: 250 NPADF--ALWKSAKEGEPFWESPWGPGRPGWHI--ECSAMSAA---YLGHSFDIHGGGMD 302
P +W + + + + S + I ++
Sbjct: 387 IPTILLSLIWFDVIKSDVM------------VVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 303 LVFP------HHENEIAQ---SCAACNN------------SHISYWIHNGFVTID-SEKM 340
L H + + ++ SHI + H I+ E+M
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--H--LKNIEHPERM 490
Query: 341 SKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCE 400
+ F ++ L R FL I + +A I TL +
Sbjct: 491 T-----LFR-----MVF--LDFR-FL-----EQKIRHD----STAWNASGSILNTLQQLK 528
Query: 401 KALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDL----HTTVVLAALSDPLKTIND 456
+ D V +I DFL + ++L +T ++ AL + I +
Sbjct: 529 FYKPYI---CDNDPKYERLVNAI----LDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 457 LLHTRKGKKQAMR 469
H KQ R
Sbjct: 582 EAH-----KQVQR 589
Score = 37.1 bits (85), Expect = 0.019
Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 28/170 (16%)
Query: 418 DTVTSINKFHN-----DFLASMSDDLHTTVVLAALSDPLKT--INDLLHTRKGKKQAMRL 470
D T +++ F + D+ V L I+ ++ ++ +RL
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 471 ESLAALEKTIRNVLT--VLGLMSTGYSEVLLQLREKALKRADLTEDQVLQR--------- 519
L ++ V ++ Y ++ ++ + + + +T + QR
Sbjct: 68 --FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 520 IEDRTVARKNKEYEKSDAIRKDLAAVGIAL--MDSPVGTTWRPALPLALQ 567
V+R + A+ + A + + + G TW +AL
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-SGKTW-----VALD 169
Score = 34.1 bits (77), Expect = 0.15
Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 79/230 (34%)
Query: 4 LILTLKCYKPLASIKFSPFINSFHTLQLR-PPKPNNRRVFRCFSTLNSSPNVID-DKSNG 61
+++ L + S ++ L K N L+ S ++D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY------ALHRS--IVDHYNIPK 457
Query: 62 KTDGDDKPASASTQLWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGH------- 114
D DD L+ P ++ Y SHIGH
Sbjct: 458 TFDSDD--------------------LIPPYLDQ-----------YFYSHIGHHLKNIEH 486
Query: 115 -------ARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRY- 166
V++ F L + +RH + + L + + + Y
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT----------LQQ--LKFYKPYI 534
Query: 167 ---CEEFHQDMVDLHCLPPSVEPRV--SDHMPHIIDMITQIL--DNGFAY 209
++ + + + P +E + S + D++ L ++ +
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYT----DLLRIALMAEDEAIF 580
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 46.1 bits (109), Expect = 2e-05
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 9/144 (6%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
HIGH + DV+ RY R G V + T D K+ A + P +
Sbjct: 25 HIGHVYSTLITDVIGRYHRVKGERVFAL---TGTDEHGQKVAEAAKQKQVSPYDFTTAVA 81
Query: 168 EEFHQDMVDLHCLPPS-VEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSV--DKFPE 224
EF + + + H + ++ T++ G Y + ++S+ + F
Sbjct: 82 GEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLT 141
Query: 225 YGQLSGRKLEDNRAGERVAVDSRK 248
++ +D +
Sbjct: 142 PQNITDGVDKDGNPCKVSLESGHV 165
Score = 33.8 bits (77), Expect = 0.16
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+G+ T D +K+SKSLGN F + E + AL+ FL+
Sbjct: 314 HGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 43.8 bits (104), Expect = 1e-04
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
G+ T++ +KMSK+LGN +V++ Y +R FL+
Sbjct: 287 GWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLL 323
Score = 41.8 bits (99), Expect = 5e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
H+GHA + D + RY R Y+V ++ T D KI +A ELG P L R
Sbjct: 21 HLGHAYTTIAADTIARYYRLRDYDVFFL---TGTDEHGLKIQKKAEELGISPKELVDRNA 77
Query: 168 EEF 170
E F
Sbjct: 78 ERF 80
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 43.8 bits (104), Expect = 1e-04
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDK----IIARANELGEDPISLSRRY 166
H+GH ++ DV RY R G+EV ++ DD I+ +A +LG P +
Sbjct: 34 HLGHMLEHIQADVWVRYQRMRGHEVNFICA----DDAHGTPIMLKAQQLGITPEQMIGEM 89
Query: 167 CEEFHQDMVDLH 178
+E D +
Sbjct: 90 SQEHQTDFAGFN 101
Score = 42.2 bits (100), Expect = 4e-04
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
+G+VT++ KMSKS G F + + +LR +
Sbjct: 336 HGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYT 373
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 43.4 bits (103), Expect = 2e-04
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
HIGHA + D + R+ R G +V ++ T D K++ A + G P L+ R
Sbjct: 41 HIGHAYELIATDAMARFQRLNGMDVYFL---TGTDEHGIKMLQSARKEGITPRDLADRNT 97
Query: 168 EEF 170
F
Sbjct: 98 SAF 100
Score = 42.3 bits (100), Expect = 4e-04
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
GF+ EKMSKS+GN +++E Y LR FL+
Sbjct: 313 GFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLM 349
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 43.2 bits (102), Expect = 2e-04
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 111 HIGH-ARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD----KIIARANELGEDPISLSRR 165
H GH A Y+ D+ RYLR G +V ++ D I RA + G P +
Sbjct: 18 HAGHLAGAYLPADIFVRYLRLKGEDVVFICG----TDEHGTPISFRALKEGRSPREIVDE 73
Query: 166 YCEEFHQDMVDLH 178
+ E+
Sbjct: 74 FHEQIKITFQRAK 86
Score = 42.4 bits (100), Expect = 4e-04
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 330 NGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
N ++T++ +K S S + + ++++ LR +L
Sbjct: 335 NEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLT 372
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 43.0 bits (102), Expect = 2e-04
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
HIGHA Y+ D + R+ R GY+V Y+ T D K+ A + G L+RR
Sbjct: 28 HIGHAYEYIATDAIARFKRLDGYDVRYL---TGTDVHGQKMAETAAKEGIPAAELARRNS 84
Query: 168 EEFHQ 172
+ F +
Sbjct: 85 DVFQR 89
Score = 41.5 bits (98), Expect = 6e-04
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
G++ EKMSKS+GN +++ + +R FL+
Sbjct: 302 GWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLL 338
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 43.0 bits (102), Expect = 2e-04
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
H+GHA V D L R+ R GY ++ T D + + A GEDP + R
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFL---TGTDEHGETVYRAAQAAGEDPKAFVDRVS 75
Query: 168 EEF 170
F
Sbjct: 76 GRF 78
Score = 38.8 bits (91), Expect = 0.005
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 331 GFVT-IDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
GF+ D KMSK+LGN ++E Y ALR +L+
Sbjct: 288 GFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLL 325
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 41.4 bits (96), Expect = 7e-04
Identities = 44/320 (13%), Positives = 94/320 (29%), Gaps = 32/320 (10%)
Query: 86 RELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD 145
++++ + E + + G+TP H+G+ R T ++ LR GYEV ++ + D D
Sbjct: 10 DKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYD 69
Query: 146 ------DKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI 199
+ + PIS H+ + E ++
Sbjct: 70 RFRKVPRNVPQEWKDYLGMPISEVPDPWGC-HESYAEHFMRKFEEEVEKLGIEVDLLYA- 127
Query: 200 TQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVA--------------VD 245
+++ G ++ + +K + ++ + E +
Sbjct: 128 SELYKRG---EYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREA 184
Query: 246 SRKKNPADFALWKSAKEGEPFWESPWGP-GRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 304
+ + + EG W + W ++ + D G D +
Sbjct: 185 EIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSH---FGVDFEPAGKDHL 241
Query: 305 FPHHENEIAQS-CAACNNSHISYWIHNGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLA 361
+ + + FV I + KMS S GN + + E+ P
Sbjct: 242 VAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGL 301
Query: 362 LRLFLIGTHYRSPINYSVVQ 381
+R I +
Sbjct: 302 VRFIYARHRPNKEIKIDLGL 321
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 41.4 bits (98), Expect = 9e-04
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 90 KPKVEGKVGMYVCGVTPY---DLSHIGHARVYVTFDVLYRYLRHLGYEV 135
+ K YV + PY DL H+GH + Y DVL R+ R GYEV
Sbjct: 32 RGK------QYVLVMFPYPSGDL-HMGHLKNYTMGDVLARFRRMQGYEV 73
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 41.4 bits (98), Expect = 9e-04
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 328 IHNGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYS 378
I +G + +D + KMSKS GN ++ + ALR ++ + +
Sbjct: 579 ICHGLI-LDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 631
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 41.1 bits (97), Expect = 0.001
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 331 GFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
G+ T D +K+SKSLGN F + + + AL+ FL+
Sbjct: 331 GWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLM 367
Score = 40.4 bits (95), Expect = 0.001
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD---DKIIARANELGEDPISLSRRYC 167
HIGH + DVL RY R G EV + T D K+ A + G P+ +
Sbjct: 42 HIGHVYSTLIVDVLGRYHRVKGEEVFVM---TGTDEHGQKVAEAAAKQGVSPMDFTTSVS 98
Query: 168 EEF 170
EF
Sbjct: 99 SEF 101
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 40.6 bits (96), Expect = 0.001
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 90 KPKVEGKVGMYVCGVTPY---DLSHIGHARVYVTFDVLYRYLRHLGYEV 135
K K Y + PY L H+GH R Y DV+ RY R LG V
Sbjct: 52 KEK------YYCLSMLPYPSGRL-HMGHVRNYTIGDVIARYQRMLGKNV 93
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 38.0 bits (89), Expect = 0.007
Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 36/133 (27%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVC---YV-------RNFTDVDDKIIARANEL----- 155
HIGHAR V D L R RHLGY+ YV I+ E
Sbjct: 46 HIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLG---LSILLSVKESILHEN 102
Query: 156 ---------GEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDH-MPHIIDMITQILDN 205
GE + L++ E+F ++ P ++D ++ +I Q L+
Sbjct: 103 VEYPEQYYKGEYIVDLAKEAFEKFGKEFFS-----EENIPSLADWAKDKMLVLIKQNLE- 156
Query: 206 GFAYRVDGDVYFS 218
++ D Y S
Sbjct: 157 --QAKIKIDSYVS 167
Score = 32.2 bits (74), Expect = 0.48
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 339 KMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASER--IFYI 392
KMSK GNF + V++ ALR + + + + + L+ ++YI
Sbjct: 285 KMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYI 340
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.15
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 31/88 (35%)
Query: 461 RKGK-KQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQR 519
RK + +Q RL+ L A K + + REKA K DL E+ ++
Sbjct: 88 RKWREEQRKRLQELDAASK-----------------VMEQEWREKAKK--DL-EEWNQRQ 127
Query: 520 IE--DRTVARKNKEYEK-------SDAI 538
E ++ N+ +K +D I
Sbjct: 128 SEQVEKNKIN-NRIADKAFYQQPDADII 154
Score = 28.2 bits (62), Expect = 6.4
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 495 SEVLLQLREKALKRADLTEDQVLQRIEDRTVARKNKEYEKSDAIRKDLA 543
E + + RE+ + +R+++ A K E E + +KDL
Sbjct: 84 PESIRKWREE---QR--------KRLQELDAASKVMEQEWREKAKKDLE 121
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 33.1 bits (76), Expect = 0.27
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD------KIIA------RANELGED 158
H+GH R D + R L + G EV V N+ +DD + + + E
Sbjct: 119 HVGHLRNIALGDAIARILAYAGREV-LVLNY--IDDTGRQAAETLFALRHYGLTWDGKEK 175
Query: 159 PISLSRRYCEEFHQD 173
+ R HQD
Sbjct: 176 YDHFAGRAYVRLHQD 190
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 30.9 bits (71), Expect = 0.78
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 124 LYRYLRHLGYEVCYVRNFTDVDDKI-IARANELGEDPISLS 163
L LR G+ V RN + + I R + + LS
Sbjct: 16 LADQLRTNGHNVVIYRN--HIPAQTLIDRLATMKNPVLMLS 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.84
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 33/61 (54%)
Query: 513 EDQVLQRIEDRTVARKNKEYEKSDAIRKDLAAVGIALMDSPVGTTWRPALPLALQEQAVA 572
E Q L++++ K Y DS PA LA++ A
Sbjct: 18 EKQALKKLQASL-----KLYAD----------------DSA------PA--LAIK----A 44
Query: 573 T 573
T
Sbjct: 45 T 45
Score = 28.0 bits (61), Expect = 5.8
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 85 KRELVKPKVEGKVGMYVCGVTP 106
K+ L K K++ + +Y P
Sbjct: 19 KQAL-K-KLQASLKLYADDSAP 38
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 31.4 bits (72), Expect = 0.92
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYV 138
H+GHA D L RY R G+E ++
Sbjct: 50 HMGHALDNSLQDALIRYKRMRGFEAVWL 77
Score = 28.7 bits (65), Expect = 7.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 339 KMSKSLGNFFTI--RQVMELYHPLALRLFLI 367
KMSKS GN I +++E Y ALR LI
Sbjct: 528 KMSKSKGN--VIDPLEMVERYGADALRFALI 556
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase,
glutaminase, thioester intermediate, ligas; HET: ADP;
1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A*
3umm_A*
Length = 1303
Score = 31.5 bits (71), Expect = 1.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 316 CAACNNSHISYWIHNGFVTIDSEKMSKSL 344
A N+ H + I N ID + KSL
Sbjct: 217 FAQANSEHCRHKIFNADWIIDGKPQPKSL 245
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 30.8 bits (70), Expect = 1.5
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDD------KIIARANELGEDPISLSR 164
H+GHAR + DV+ R LR LGYEV V+N+ +DD ++ L E+ +
Sbjct: 135 HMGHARNAILGDVMARILRFLGYEV-EVQNY--IDDLGIQFAQVYWGYLRLKEEFERIMN 191
Query: 165 RYCEEFHQDMVDLHCL 180
E +D H L
Sbjct: 192 ELRERGLKDNPIDHAL 207
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 30.6 bits (70), Expect = 1.6
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 331 GFVTIDSE--KMSKSLGNFFTIRQVMELY 357
GF +D E KMSKSLGN QV++
Sbjct: 586 GF-VMDGEGKKMSKSLGNVIVPDQVVKQK 613
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus
aureus subsp}
Length = 281
Score = 29.9 bits (68), Expect = 1.8
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 15/49 (30%)
Query: 95 GKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV-CYVRNFT 142
V +C YDL R F L RY G ++ YV +
Sbjct: 159 TYVTQLIC----YDL------R----FPELLRYPARSGAKIAFYVAQWP 193
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 29.4 bits (67), Expect = 2.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 335 IDSEKMSKSLGN 346
D KMSKS GN
Sbjct: 201 TDGRKMSKSYGN 212
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
phospholipid synthesis, phosphatidylcholine,
phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
{Rattus norvegicus}
Length = 236
Score = 29.2 bits (65), Expect = 3.0
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 67 DKPASASTQLWLYNTMSRKRELV-----KPKVEGKVGMYVCGVTPYDLSHIGHAR 116
+PA S ++ + + R + E V +Y G+ +DL H GHAR
Sbjct: 42 RQPAPFSDEIEVDFSKPYVRVTMEEACRGTPCERPVRVYADGI--FDLFHSGHAR 94
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function,
protein structure INI PSI-2; 2.51A {Corynebacterium
diphtheriae nctc 13129ORGANISM_TAXID}
Length = 507
Score = 28.9 bits (65), Expect = 4.7
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 401 KALSLLDAA------ALK---------DSIPPDTVTSINKFHNDFLASMSDDLHTTVVLA 445
LL + ALK + P+++ I L S + LHT VL
Sbjct: 377 ATSDLLGCSSSMLLNALKHLAGIDDAIHLLSPESIEPIQTLKTVHLGSSNPRLHTDEVLI 436
Query: 446 ALS 448
ALS
Sbjct: 437 ALS 439
>2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins,
electron transport, iron, metal-binding, periplasm,
transport; HET: HEM; NMR {Shewanella frigidimarina}
Length = 86
Score = 27.0 bits (59), Expect = 4.8
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 297 HGGGMDLVFPHHENEIAQSCAACNNSH 323
HG ++ H ++ CA C+ H
Sbjct: 39 HGSLAEMDDNHKPHDGLLMCADCHAPH 65
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 28.8 bits (65), Expect = 5.9
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 321 NSHISYWIHNGFVTIDS 337
N+ I Y + + +DS
Sbjct: 357 NAEIEYLVSDDHFAVDS 373
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD;
1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Length = 482
Score = 28.5 bits (64), Expect = 6.3
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 222 FPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFW 267
P Y + D R + +++ K +P W
Sbjct: 334 NPGYDGFESFPSWAKESLNAHRNDVRS-HIYTLEEFEAGKTHDPLW 378
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 27.9 bits (61), Expect = 8.9
Identities = 35/285 (12%), Positives = 66/285 (23%), Gaps = 21/285 (7%)
Query: 144 VDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQIL 203
++ + +SL+ V L + D ++ + ++
Sbjct: 33 LNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAPTLEQLEKLK 92
Query: 204 DNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEG 263
R Y L+ + + + V S
Sbjct: 93 KVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWS----------------- 135
Query: 264 EPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSH 323
E P G G ++AA L ++ D E
Sbjct: 136 ----ELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYE 191
Query: 324 ISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLE 383
IH +D+ + + ++ L AL++ L T V +
Sbjct: 192 GERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPALQILLTNTKVPRSTKALVAGVR 251
Query: 384 SASERIFYIYQTLHDCEKALSLLDAAALKDSIPPDTVTSINKFHN 428
S + I L A+SL L +
Sbjct: 252 SRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEE 296
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 27.7 bits (61), Expect = 9.6
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 234 EDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWHI 280
E+ + ++ + P + A + E WE W W
Sbjct: 3 EEQQNSDQSNGGNVIPTPEEVATFLHKTVEEGGWEKCWEEEITPWDQ 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,040,997
Number of extensions: 564009
Number of successful extensions: 1494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1460
Number of HSP's successfully gapped: 75
Length of query: 574
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 475
Effective length of database: 3,937,614
Effective search space: 1870366650
Effective search space used: 1870366650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)