RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008191
(574 letters)
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 301 bits (772), Expect = 3e-99
Identities = 172/311 (55%), Positives = 219/311 (70%), Gaps = 1/311 (0%)
Query: 76 LWLYNTMSRKRELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEV 135
L ++NT++R++E KP G+VGMYVCG+T YDL HIGH R +V FDV+ RYLR LGY++
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 136 CYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHI 195
YVRN TD+DDKII RANE GE +++ R E H+D L+ L P +EPR + H+ I
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 196 IDMITQILDNGFAYRVD-GDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADF 254
I++ Q++ G AY D GDV F V P YG LS + L+ +AG RV V K+NP DF
Sbjct: 122 IELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDF 181
Query: 255 ALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ 314
LWK +KEGEP W SPWG GRPGWHIECSAM+ LG+ FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241
Query: 315 SCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSP 374
S A + +++YW+H+G V +D EKMSKSLGNFFT+R V++ Y +R FL+ HYRS
Sbjct: 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQ 301
Query: 375 INYSVVQLESA 385
+NYS L+ A
Sbjct: 302 LNYSEENLKQA 312
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 186 bits (472), Expect = 5e-55
Identities = 43/314 (13%), Positives = 93/314 (29%), Gaps = 24/314 (7%)
Query: 86 RELVKPKVEGKVGMYVCGVTPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVD 145
++++ + E + + G+TP H+G+ R T ++ LR GYEV ++ + D D
Sbjct: 8 DKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYD 67
Query: 146 -----------------DKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRV 188
I+ + S + + +F +++ L +
Sbjct: 68 RFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASE 127
Query: 189 SDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRK 248
+ I + + Y + + R + +
Sbjct: 128 LYKRGEYSEEIRLAFEKRDKIMEILNKYREI-AKQPPLPENWWPAMVYCPEHRREAEIIE 186
Query: 249 KNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHH 308
+ +K + E + + G + W ++ + D G D +
Sbjct: 187 WDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGS 243
Query: 309 ENEIAQSCA-ACNNSHISYWIHNGFVTIDSE--KMSKSLGNFFTIRQVMELYHPLALRLF 365
+ + + FV I + KMS S GN + + E+ P +R
Sbjct: 244 SYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFI 303
Query: 366 LIGTHYRSPINYSV 379
I +
Sbjct: 304 YARHRPNKEIKIDL 317
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 160 bits (404), Expect = 8e-45
Identities = 50/325 (15%), Positives = 100/325 (30%), Gaps = 52/325 (16%)
Query: 105 TPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSR 164
H+GH ++ DV RY R G+EV ++ I+ +A +LG P +
Sbjct: 12 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIG 71
Query: 165 RYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMI-TQILDNGFAYRVDGDVYFSVDK-- 221
+E D + + S+ + ++I +++ +NGF + +K
Sbjct: 72 EMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGM 131
Query: 222 -FPEYGQLSGRKLED-----------------NRAGERVAVDSRKKNPADFALWKSAKEG 263
P+ +SG A+ + N ++
Sbjct: 132 FLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQW 191
Query: 264 EPFWESPWGPGR----------------------------PGWHIECSAMSAAYLGHSFD 295
+ ++P+ +
Sbjct: 192 DISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAEL 251
Query: 296 IHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQVME 355
H G D+V+ H A + + ++H G+VT++ KMSKS G F +
Sbjct: 252 YHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLN 310
Query: 356 LYHPLALRLFLI--GTHYRSPINYS 378
+ +LR + + I+ +
Sbjct: 311 HFDADSLRYYYTAKLSSRIDDIDLN 335
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 159 bits (401), Expect = 2e-44
Identities = 50/332 (15%), Positives = 87/332 (26%), Gaps = 53/332 (15%)
Query: 100 YVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGE 157
YV Y H+GHA V D L R+ R GY ++ + + + A GE
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 158 DPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMIT-QILDNGFAYRVDGDVY 216
DP + R F + L + ++ ++ ++ + G Y + +
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 217 FSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKE-------------- 262
+ V Y + + G V ++ +
Sbjct: 126 YCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEG 185
Query: 263 ------------------GEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 304
P PWG P + + L +
Sbjct: 186 YRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEA 245
Query: 305 FPHHENEIAQSCAACNNSHIS-----------------YWIHNGFVTIDSEKMSKSLGNF 347
+ + + + D KMSK+LGN
Sbjct: 246 YRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNV 305
Query: 348 FTIRQVMELYHPLALRLFLI-GTHYRSPINYS 378
++E Y ALR +L+ Y S
Sbjct: 306 VDPFALLEKYGRDALRYYLLREIPYGQDTPVS 337
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 153 bits (386), Expect = 4e-42
Identities = 45/338 (13%), Positives = 86/338 (25%), Gaps = 64/338 (18%)
Query: 105 TPYDLSHIGHAR-VYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLS 163
H GH Y+ D+ RYLR G +V ++ + I RA + G P +
Sbjct: 12 YANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIV 71
Query: 164 RRYCEEFHQDMVDLHCLPPSVEPRVSD-HMPHIIDMITQILDNGFAYRVDGDVYFSVDKF 222
+ E+ H + + +NG + +
Sbjct: 72 DEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDK 131
Query: 223 ---PEYGQLSGRKLE--------------------------------------------- 234
P+ + GR +
Sbjct: 132 MFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEE 191
Query: 235 ---DNRAGERVAVDSRKKNPADFALWKSAK-EGEPFWESPWGPGRPGWHIECSAMSAAYL 290
+ V +++ L+ + + R G E
Sbjct: 192 RAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNID 251
Query: 291 GHSFDIHGGGMDLVFPHHENEIAQSCAACNNS---------HISYWIHNGFVTIDSEKMS 341
G + IH G D + H A A N ++T++ +K S
Sbjct: 252 GQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFS 311
Query: 342 KSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYS 378
S + + ++++ LR +L ++S
Sbjct: 312 TSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFS 349
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 84.2 bits (207), Expect = 7e-18
Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 8/182 (4%)
Query: 209 YRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWE 268
Y +G++ + + L + K + + G E
Sbjct: 273 YAENGEIIMTKETVNHVADLFAEHGSNIWFEREA-----KDLLPEGFTHPGSPNGTFTKE 327
Query: 269 SPWGPGRPGWHIECSAMSAAYLGHSF--DIHGGGMDLVFPHHENEIAQSCAACNNSHISY 326
+ + SF D++ G D + I S A S +
Sbjct: 328 TDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKF 387
Query: 327 WIHNGFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESA 385
+ +GFV + +KMSKSLGN QV++ RL++ T Y + + S L+
Sbjct: 388 LLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQT 447
Query: 386 SE 387
S+
Sbjct: 448 SD 449
Score = 65.4 bits (158), Expect = 6e-12
Identities = 28/187 (14%), Positives = 49/187 (26%), Gaps = 18/187 (9%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+GHA + D + RY G+ YV + I + G D +S E
Sbjct: 64 HMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREK 123
Query: 171 HQDMVDLH---------------CLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDV 215
++ ++ I + ++ D G Y+ V
Sbjct: 124 CKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPV 183
Query: 216 YFSVDKFPEYGQLSGRKLEDNRAG---ERVAVDSRKKNPADFALWKSAKEGEPFWESPWG 272
Y+S + D R A + + ++ WG
Sbjct: 184 YWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWG 243
Query: 273 PGRPGWH 279
R
Sbjct: 244 KTRIYNM 250
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 78.4 bits (192), Expect = 4e-16
Identities = 41/307 (13%), Positives = 73/307 (23%), Gaps = 32/307 (10%)
Query: 85 KRELVKPKVEGKVGMYVCGVTPY--DLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNFT 142
K V GK + P H+GHA D L RY R G+E ++
Sbjct: 22 KNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81
Query: 143 DVDDKIIARANEL----GEDPISLSR------------RYCEEFHQDMVDLHCLP---PS 183
L G+ L R + + L
Sbjct: 82 HAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSRE 141
Query: 184 VEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVA 243
+ ++ G AYR V + L A
Sbjct: 142 AFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETCSRCGTPIEYA 201
Query: 244 VDSRKKNPAD---FALWKSAKEGEPFWESPWGPGR--------PGWHIECSAMSAAYLGH 292
+ + + K + G+ + W+I +
Sbjct: 202 IFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPA 261
Query: 293 SFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSKSLGNFFTIRQ 352
+ +++ P E SC AC + + S S + +
Sbjct: 262 WYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETE 321
Query: 353 VMELYHP 359
++ ++P
Sbjct: 322 DLKAFYP 328
Score = 75.0 bits (183), Expect = 5e-15
Identities = 31/237 (13%), Positives = 57/237 (24%), Gaps = 15/237 (6%)
Query: 164 RRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFP 223
+ + P R+ ++ + + R ++
Sbjct: 186 LEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVK 245
Query: 224 EYGQLSGRKLEDNRAGERVAVDSRKKNPAD--FALWKSAKEGEPFWESPWGPGRPGWHIE 281
++ P + ++ E
Sbjct: 246 DWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFS 305
Query: 282 CSAMSAAYLGHSF-----------DIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHN 330
+ + LG D+ G D++F + +
Sbjct: 306 SALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLH 365
Query: 331 GFV-TIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYSVVQLESA 385
G V +KMSKS GN +++E Y ALR LI I + LE A
Sbjct: 366 GLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMA 422
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 70.4 bits (171), Expect = 2e-13
Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 8/221 (3%)
Query: 166 YCEEFHQDMVDLHCLPPSV-EPRVSDHMPHIID-----MITQILDNGFAYRVDGDVYFSV 219
+ +E ++ ++H +PP + E R + + +++D ++
Sbjct: 222 FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAI 281
Query: 220 DKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGPGRPGWH 279
F E + + L + R VD + A + W H
Sbjct: 282 GSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLH 341
Query: 280 IECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFV-TIDSE 338
D G+D + + I +G + +
Sbjct: 342 YPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQ 401
Query: 339 KMSKSLGNFFTIRQVMELYHPLALRLFLI-GTHYRSPINYS 378
KMSKS GN ++ + ALR ++ + +
Sbjct: 402 KMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 442
Score = 56.1 bits (134), Expect = 6e-09
Identities = 32/273 (11%), Positives = 65/273 (23%), Gaps = 37/273 (13%)
Query: 105 TPYDLSHIGHARVYVTFDVLYRYLRHLGYEVCYVRNF--------------------TDV 144
T L H+GHA+ D+ RY GY + ++
Sbjct: 48 TANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREI 107
Query: 145 DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILD 204
+ I R N+ + + + E F + + L + ++ I + + D
Sbjct: 108 EAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFD 167
Query: 205 NGFAYRVDGDVYFSVDKFPE-----------YGQLSGRKLEDNRAGERVAVDSRKKNPAD 253
G YR V + + L ++ K+
Sbjct: 168 RGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELI 227
Query: 254 FALWKSAKEGEPFWES---PWGPGRPGWHIECSAMSAAYLGHSFDIH-GGGMDLVFPHHE 309
+ E W W + S + G + +
Sbjct: 228 RNNQEIHWVPPHIKEGRYGEWLKNLVDWAL--SRNRYWGTPLPIWVCQACGKEEAIGSFQ 285
Query: 310 NEIAQSCAACNNSHISYWIHNGFVTIDSEKMSK 342
A++ + + V +
Sbjct: 286 ELKARATKPLPEPFDPHRPYVDQVELACACGGT 318
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 58.4 bits (140), Expect = 7e-10
Identities = 30/270 (11%), Positives = 68/270 (25%), Gaps = 30/270 (11%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEV-----------------CYVRNFTDVDDKIIARAN 153
H GH R + L LG+EV + + + + +
Sbjct: 24 HAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIH 83
Query: 154 ELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDG 213
L + + +++ EE ++ + E D + F
Sbjct: 84 HLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG---DEEALKIWKRFREFSIE 140
Query: 214 DVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKN-----PADFALWKSAKEGEPFWE 268
+ + + + + ++ A+D K+ L K + +
Sbjct: 141 KYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGK 200
Query: 269 SPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQ---SCAACNNSHIS 325
+ + AA + + ++ + AQ
Sbjct: 201 AIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAK 260
Query: 326 YWIHNGFVTIDSEKMSKSLGNFFTIRQVME 355
H F + MS G + ++E
Sbjct: 261 DLQHVNFGMVQ--GMSTRKGTVVFLDNILE 288
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 53.3 bits (127), Expect = 2e-08
Identities = 47/276 (17%), Positives = 76/276 (27%), Gaps = 38/276 (13%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+G A Y + R G VR D D AR E+ I + ++
Sbjct: 15 HVGTAY---IALFNYAWARRNG-GRFIVR-IEDTD---RARYVPGAEERILAALKWLGLS 66
Query: 171 HQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSG 230
+ + D P R S+ +P ++L G+AYR E G G
Sbjct: 67 YDEGPD--VGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDG 124
Query: 231 RKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGP----------------- 273
R + ++ K + G +
Sbjct: 125 RARNIPPEEAE---ERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS 181
Query: 274 -GRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGF 332
G P +H+ G + I + P H A ++
Sbjct: 182 DGYPTYHLANVVDDHLM-GVTDVIRAEEWLVSTPIHVLL----YRAFGWEAPRFYHMPLL 236
Query: 333 VTIDSEKMSKSLGNFFTIRQVMEL-YHPLALRLFLI 367
D K+SK ++ + P ALR +L
Sbjct: 237 RNPDKTKISKRKS-HTSLDWYKAEGFLPEALRNYLC 271
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 52.2 bits (124), Expect = 8e-08
Identities = 42/294 (14%), Positives = 79/294 (26%), Gaps = 51/294 (17%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVC---YVRNF-TDVDDKIIARANELGE-----DPIS 161
H+GH R D + R L + G EV Y+ + + + A +
Sbjct: 23 HVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 82
Query: 162 LSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFS--- 218
+ R HQD P E + + + + +IL A + +
Sbjct: 83 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLV 142
Query: 219 ----------VDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPAD--------------- 253
+ K + S A+
Sbjct: 143 WESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGT 202
Query: 254 ---------FALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV 304
F WK + P PG + SA + +D+
Sbjct: 203 ATYYAKDIAFQFWKMGILEGLRFRPYENPYYPG--LRTSAPEGEAYTPKAEETINVVDVR 260
Query: 305 FPHHENEIAQSCAACNNSHISYWIHN---GFVTIDSEKMSKSLGNFFTIRQVME 355
H + + + A ++ H+ V ++ +MS G ++ +V+E
Sbjct: 261 QSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLE 314
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 51.1 bits (121), Expect = 2e-07
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H+GH + Y DVL R+ R GYEV + + A + G P + +
Sbjct: 49 HMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108
Query: 171 HQDMVDLHCLPPSVEPRVS---DHMPHIIDMITQILDNGFAYRVDGDVYFSVD 220
+ + + L + ++ + ++ + G AYR G V +
Sbjct: 109 KESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPK 161
Score = 41.5 bits (96), Expect = 2e-04
Identities = 24/223 (10%), Positives = 53/223 (23%), Gaps = 15/223 (6%)
Query: 145 DDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILD 204
D K + G+ P+ + E D + + D
Sbjct: 266 DLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHND 325
Query: 205 NGFAYRVDGDVYFSVDKFPEYGQLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGE 264
+ + VD++ + + L +R + D
Sbjct: 326 RLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVK-------------- 371
Query: 265 PFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHI 324
E G G + + + S + E+ ++ + +
Sbjct: 372 -VEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAEL 430
Query: 325 SYWIHNGFVTIDSEKMSKSLGNFFTIRQVMELYHPLALRLFLI 367
MSKS GN + ++ R+ ++
Sbjct: 431 RPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITIL 473
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 87
Score = 45.3 bits (107), Expect = 6e-07
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 410 ALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTRKGKKQAMR 469
AL+ + F F+ +M DD +T + L D + +N L
Sbjct: 7 ALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDM------- 59
Query: 470 LESLAALEKTIRNVLTVLGLM 490
+ A+ +R + VLGL+
Sbjct: 60 -AAANAMASHLRKLSAVLGLL 79
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 120
Score = 31.3 bits (71), Expect = 0.089
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 402 ALSLLDAAALKDSIPPDTVTSINKFHNDFLASMSDDLHTTVVLAALSDPLKTINDLLHTR 461
AL +D A + IP + N S ++ L + + A L + I D + +
Sbjct: 3 ALKTIDWVAFGEIIPRNQKAVANSL-----KSWNETLTSRL--ATLPEKPPAI-DWAYYK 54
Query: 462 KGKKQAMRLESLAALEKTIRNVLTVLGLMSTGYSEVLLQLREKALKRADLTEDQVLQRIE 521
+A ++ EK N L V ++V + ++ +K Q RI+
Sbjct: 55 ANVAKAGLVDD---FEKKF-NALKVPIPEDKYTAQVDAE-EKEDVKSCAEFLTQSKTRIQ 109
Query: 522 D 522
+
Sbjct: 110 E 110
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 31.3 bits (69), Expect = 0.24
Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 3/146 (2%)
Query: 278 WHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDS 337
E + M S D V + N + + A + + N + +
Sbjct: 109 LLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVC 168
Query: 338 EKMSKSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLH 397
+ MS + + ++ P + I + + + + +RI
Sbjct: 169 DSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASN--G 225
Query: 398 DCEKALSLLDAAALKDSIPPDTVTSI 423
+ +L +L++ AL + + + + I
Sbjct: 226 NLRVSLLMLESMALNNELALKSSSPI 251
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 30.6 bits (68), Expect = 0.36
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 124 LYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHC 179
L LR G++V RN + II R + + + LS +
Sbjct: 16 LVDQLRASGHQVVIYRN-QIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELL 70
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania
major [TaxId: 5664]}
Length = 302
Score = 29.6 bits (66), Expect = 0.85
Identities = 23/138 (16%), Positives = 33/138 (23%), Gaps = 20/138 (14%)
Query: 210 RVDGDVYFSVDKF--PEYGQLSGRKLEDNRAGERVAV--------------DSRKKNPAD 253
DG F DK+ G R + D E+ V R + A
Sbjct: 26 AEDGQATFVEDKWTREGGGGGRTRVMVDGAVIEKGGVNFSHVYGKGLPMSSTERHPDIAG 85
Query: 254 FALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIH-GGGMDLVFPHHENEI 312
++P P H A G GGG DL + E
Sbjct: 86 CNFEAMGVSLVIHPKNPHVPTS---HANVRLFVAEREGKEPVWWFGGGFDLTPYYAVEED 142
Query: 313 AQSCAACNNSHISYWIHN 330
+ + +
Sbjct: 143 CRDFHQVAQDLCKPFGAD 160
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 29.4 bits (65), Expect = 0.93
Identities = 28/264 (10%), Positives = 51/264 (19%), Gaps = 39/264 (14%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
H G Y R VR D+D R + I
Sbjct: 16 HFGSLI---AALGSYLQARARQ-GRWLVR-IEDID---PPREVPGAAETI---------- 57
Query: 171 HQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYFSVDKFPEYGQLSG 230
+ + S + + + + G +Y + + G +
Sbjct: 58 LRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTC----TRARIQSIGGIYD 113
Query: 231 RKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWESPWGP--------GRPGWHIEC 282
G A ++ + E G +++
Sbjct: 114 GHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAV 173
Query: 283 SAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMSK 342
G DL+ P Y + K+SK
Sbjct: 174 VVDD---HFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD--YIHLPLALNPQGAKLSK 228
Query: 343 SLGNFFTIRQVMELYHPLALRLFL 366
+ + L L
Sbjct: 229 QNHAPA----LPKGDPRPVLIAAL 248
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate
reductase), N-terminal domain {Shewanella oneidensis
[TaxId: 70863]}
Length = 90
Score = 27.4 bits (60), Expect = 1.3
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 291 GHSFDIHGGGMDLVFPHHENEIAQSCAACNNSH 323
HG ++ H ++ CA C+ H
Sbjct: 32 AQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVH 64
>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella
typhimurium [TaxId: 90371]}
Length = 229
Score = 28.9 bits (64), Expect = 1.4
Identities = 9/65 (13%), Positives = 17/65 (26%)
Query: 248 KKNPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPH 307
++ + K G + G I + + FD + PH
Sbjct: 98 RERGLLAPMADRVKRGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINPH 157
Query: 308 HENEI 312
N +
Sbjct: 158 FTNAL 162
>d2djfa1 b.61.5.1 (A:1-118) Dipeptidyl peptidase I (cathepsin C),
exclusion domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 27.5 bits (61), Expect = 2.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 200 TQILDNGFAYRVDGDVYFSVDKFPEYG 226
T I + GF ++ +F+ K+ E G
Sbjct: 61 TIIYNQGFEIVLNDYKWFAFFKYKEEG 87
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 27.6 bits (60), Expect = 3.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 124 LYRYLRHLGYEVCYVRNFTDVDD 146
++R LR+LG E + N T +++
Sbjct: 16 IWRTLRYLGVETKIIPNTTPLEE 38
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 27.6 bits (60), Expect = 4.3
Identities = 45/306 (14%), Positives = 78/306 (25%), Gaps = 41/306 (13%)
Query: 124 LYRYLRHLGYEVCYVRNFTDVDDKIIARANELGE------------DPISLSRRYCEEFH 171
L L L +V + NF + + L D +L
Sbjct: 32 LLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAG 91
Query: 172 QDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVDGDVYF-SVDKFPEYGQLSG 230
D V SV ++D + I L+ A R F YG G
Sbjct: 92 VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPG 151
Query: 231 RKLEDNRAGERVAVDSRKKNPADFALWKSAKEGE-------PF--WESPWGPGRPGWHIE 281
++ G+ ++ + K + ++ F + P +
Sbjct: 152 LPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVI 211
Query: 282 CSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIHNGFVTIDSEKMS 341
S+ G I+G G + Q+ + + + +
Sbjct: 212 PKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVGGR--- 268
Query: 342 KSLGNFFTIRQVMELYHPLALRLFLIGTHYRSPINYSVVQLESASERIFYIYQTLHDCEK 401
+ +L+ L L G Y Y R + +L D K
Sbjct: 269 ---------TSLNQLFFALRDGLAENGVSYHREPVY-------RDFREGDVRHSLADISK 312
Query: 402 ALSLLD 407
A LL
Sbjct: 313 AAKLLG 318
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Length = 306
Score = 27.4 bits (59), Expect = 4.5
Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 4/124 (3%)
Query: 214 DVYFSVDKFPEYGQ-LSGRKLEDNRAGE--RVAVD-SRKKNPADFALWKSAKEGEPFWES 269
D ++ FP G+ ++G + G+ AV R F
Sbjct: 13 DHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQ 72
Query: 270 PWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACNNSHISYWIH 329
+ ++G G +++ H A S A
Sbjct: 73 QLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANA 132
Query: 330 NGFV 333
+ +
Sbjct: 133 SALL 136
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 123
Score = 26.6 bits (58), Expect = 4.6
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 122 DVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDMVDLHCLP 181
VL R L G N +V + ++ ++ I + + + H +
Sbjct: 17 WVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPML 76
Query: 182 P 182
P
Sbjct: 77 P 77
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 26.8 bits (58), Expect = 5.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 124 LYRYLRHLGYEVCYVRNFTDVDD 146
+R LR LG + V N D +
Sbjct: 17 EWRVLRELGVDTKIVPNDIDSSE 39
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 26.4 bits (57), Expect = 6.2
Identities = 11/56 (19%), Positives = 17/56 (30%)
Query: 14 LASIKFSPFINSFHTLQLRPPKPNNRRVFRCFSTLNSSPNVIDDKSNGKTDGDDKP 69
++ P N P P F + ++ D +TD DKP
Sbjct: 88 VSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKP 143
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 26.5 bits (57), Expect = 9.4
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 118 YVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGED 158
+V F + + LG + + F D + R EL +
Sbjct: 187 FVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNPELSKK 227
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA,
N-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 121
Score = 25.4 bits (55), Expect = 9.7
Identities = 8/53 (15%), Positives = 15/53 (28%)
Query: 122 DVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFHQDM 174
L R LR G+EV + + + I++ +
Sbjct: 15 ASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTAL 67
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 26.4 bits (57), Expect = 9.9
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 18/102 (17%)
Query: 111 HIGHARVYVTFDVLYRYLRHLGYEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEF 170
HIGHA+ + + + + C +R DD +P+ Y E
Sbjct: 33 HIGHAK---SICLNFGIAQDYK-GQCNLR----FDDT----------NPVKEDIEYVESI 74
Query: 171 HQDMVDLHCLPPSVEPRVSDHMPHIIDMITQILDNGFAYRVD 212
D+ L SD+ + ++++ G AY +
Sbjct: 75 KNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDE 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,185,685
Number of extensions: 105531
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 47
Length of query: 574
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 484
Effective length of database: 1,171,896
Effective search space: 567197664
Effective search space used: 567197664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.6 bits)