BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008192
(574 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana
GN=ROPGEF1 PE=1 SV=2
Length = 548
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/576 (71%), Positives = 466/576 (80%), Gaps = 30/576 (5%)
Query: 1 MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
MGS+SS++D + SERCGSYS SAD+SESES SS S RFD EGASSS+ SSPR VA
Sbjct: 1 MGSLSSEED-DEVSSERCGSYSPSADISESESSSSFSC--HRFDGEGASSSIPSSPRVVA 57
Query: 61 -RGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGV 119
RGF FP PVM+PVIGGKDVV WD+K + D DLSE+EMMKERFAKLLLGEDMSGGGKGV
Sbjct: 58 GRGFYFPAPVMLPVIGGKDVV-WDDK--QPDNDLSEIEMMKERFAKLLLGEDMSGGGKGV 114
Query: 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFP 179
CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRE++WLLCVSDSIVEL+PSIQQFP
Sbjct: 115 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFP 174
Query: 180 GGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAF 239
GGGTYE+M TRPRSDLY NLPALKKLDAMLI MLD F +TEFWY DRGIV+GD D+D++
Sbjct: 175 GGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDC-DKDSY 233
Query: 240 SSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLA 299
+S SVR E+KWWLPCPKVP NGLSE+ RKKLQQCRD NQILKAA+AINS VLA
Sbjct: 234 NSPA-----SVRQEDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLA 288
Query: 300 EMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAA 359
EMEIP YLETLPK+GK CLG+IIY+Y+TA++FSPECLLDCLDLSSEH TLE+ANRIEAA
Sbjct: 289 EMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAA 348
Query: 360 VHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQ 419
VHVW+QK+ R+H +K + SSWGGKVKGLV D+E+N L RAETLL SLR+RFPGLPQ
Sbjct: 349 VHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQ 408
Query: 420 TALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKR-CAAAESISLF 478
T LDMNKIQYNKDVGQSILESYSRVMES+AFNI ARIDDVL+VDDA +R + ES+SLF
Sbjct: 409 TTLDMNKIQYNKDVGQSILESYSRVMESMAFNITARIDDVLYVDDAMRRSISVTESLSLF 468
Query: 479 SRGGLSGLPIQKRMSPSPFSIQHTPYASPFGTPTFCSSTPVGGSPGRVPTAQKRSSLKEA 538
S ++GL QK FS+Q +P+ SPF TP ++ SP R P S+K
Sbjct: 469 S---INGLNPQK-----AFSVQSSPHGSPFATPALSVAS---RSPRRAPPLY---SVKRN 514
Query: 539 PPRKLEKPCPAEFERVWSYAGNLSSRRVSGDAPERD 574
R EK E E+ WSYAGNLSSRRV+G PERD
Sbjct: 515 GTR--EKGIVGETEKAWSYAGNLSSRRVTGVTPERD 548
>sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana
GN=ROPGEF2 PE=1 SV=2
Length = 485
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/379 (55%), Positives = 271/379 (71%), Gaps = 18/379 (4%)
Query: 95 EVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW 154
E+E MKERF+KLLLGEDMSG GKGVCTA+ ISNAITNL ATVFG+ RLEPL ++K W
Sbjct: 116 ELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLEIEQKTTW 175
Query: 155 RREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLD 214
+REM LL V D I E +P Q G T EVM +RPR+D+Y+NLPAL+KLD+ML+ LD
Sbjct: 176 KREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALD 235
Query: 215 GFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSV--RHEEKWWLPCPKVPQNGLSEDV 272
F +TEFWY + G + + S S R + R EEKWWLP P VP GLSE
Sbjct: 236 SFQKTEFWYAEEGSL-----SMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKA 290
Query: 273 RKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD-Q 331
RK+L+ R+ TNQI KAAMAINSS+L EM+IP +Y+ TLPK+GKA GD IYR++T+ +
Sbjct: 291 RKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGR 350
Query: 332 FSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVA 391
FSPE LLD L + SEH L++A+R+EA+++ W++K L++SK SSW VK L++
Sbjct: 351 FSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRK---ACLNNSK---SSW-NMVKDLMS 403
Query: 392 DSE---KNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESL 448
+E KN+ LA RAE+LL L+ R+P L QT+LD+ KI NKDVG+++LESYSRV+E L
Sbjct: 404 ITERSDKNYVLAERAESLLFCLKQRYPELSQTSLDICKIHCNKDVGKAVLESYSRVLEGL 463
Query: 449 AFNIMARIDDVLFVDDATK 467
AFNI+A IDDVL+VD +
Sbjct: 464 AFNIVAWIDDVLYVDKTMR 482
>sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana
GN=ROPGEF8 PE=1 SV=1
Length = 523
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/392 (51%), Positives = 267/392 (68%), Gaps = 26/392 (6%)
Query: 87 EKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPL 146
++S+ +++EMMK+RFAKLLLGEDMSGGGKGV +ALA+SNAITNL+A++FGE +L+P+
Sbjct: 77 KRSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPM 136
Query: 147 APQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLD 206
++A W++E+ WLL V+D IVE VPS Q G E+M TR R DL MN+PAL+KLD
Sbjct: 137 PQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLD 196
Query: 207 AMLIGMLDGF-CETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
AMLI LD F EFWYV R G D R +KWWLP KVP
Sbjct: 197 AMLIDTLDNFRGHNEFWYVSRDSEEGQQARND-------------RTNDKWWLPPVKVPP 243
Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
GLSE R+ L +D Q+ KAAMAIN+ VL+EMEIP +Y+++LPKNG+A LGD IY+
Sbjct: 244 GGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYK 303
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
IT + F PE L LD+S+EH L++ NRIEA+V +WK+K H+K +SSWG
Sbjct: 304 SITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRK------LHTKDTKSSWGSA 357
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVM 445
V EK RAET+L L+ +FPGLPQ++LD++KIQ+NKDVGQ++LESYSR++
Sbjct: 358 VS-----LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRIL 412
Query: 446 ESLAFNIMARIDDVLFVDD-ATKRCAAAESIS 476
ESLA+ +M+RI+DVL+ D A K+ AE S
Sbjct: 413 ESLAYTVMSRIEDVLYTDTLALKQTLLAEETS 444
>sp|Q02566|MYH6_MOUSE Myosin-6 OS=Mus musculus GN=Myh6 PE=1 SV=2
Length = 1938
Score = 35.4 bits (80), Expect = 1.4, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1739 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1798
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1799 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1848
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1849 IKELTYQTEEDKKNLMRLQDLVDKLQLKVKAYKRQA 1884
>sp|P43352|RAD52_MOUSE DNA repair protein RAD52 homolog OS=Mus musculus GN=Rad52 PE=2 SV=1
Length = 420
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 72 PVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITN 131
P +GGK V+++ + +D + + +++R + M+GGG+ VC + + N
Sbjct: 17 PFVGGKSVLLFGQSQYTADEYQAIQKALRQRLGPEYISSRMAGGGQKVC--YIEGHRVIN 74
Query: 132 LSATVFG 138
L+ +FG
Sbjct: 75 LANEMFG 81
>sp|Q91Z83|MYH7_MOUSE Myosin-7 OS=Mus musculus GN=Myh7 PE=1 SV=1
Length = 1935
Score = 35.0 bits (79), Expect = 1.7, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQA 1882
>sp|P12883|MYH7_HUMAN Myosin-7 OS=Homo sapiens GN=MYH7 PE=1 SV=5
Length = 1935
Score = 35.0 bits (79), Expect = 1.7, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQA 1882
>sp|P13540|MYH7_MESAU Myosin-7 OS=Mesocricetus auratus GN=MYH7 PE=2 SV=2
Length = 1934
Score = 35.0 bits (79), Expect = 1.8, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1736 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1795
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1796 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1845
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1846 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQA 1881
>sp|P49824|MYH7_CANFA Myosin-7 OS=Canis familiaris GN=MYH7 PE=1 SV=3
Length = 1935
Score = 35.0 bits (79), Expect = 1.8, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQA 1882
>sp|P79293|MYH7_PIG Myosin-7 OS=Sus scrofa GN=MYH7 PE=2 SV=2
Length = 1935
Score = 35.0 bits (79), Expect = 1.8, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQA 1882
>sp|Q9BE39|MYH7_BOVIN Myosin-7 OS=Bos taurus GN=MYH7 PE=2 SV=1
Length = 1935
Score = 35.0 bits (79), Expect = 1.8, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQA 1882
>sp|Q8MJU9|MYH7_HORSE Myosin-7 OS=Equus caballus GN=MYH7 PE=2 SV=1
Length = 1935
Score = 34.7 bits (78), Expect = 2.0, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CRD + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1737 LQTEVEEAVQECRDAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1796
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +E +Q+++ K R S +
Sbjct: 1797 LDEAEQIALKGGKKQLQ-KLEARVRELENELEV--------EQKRNAESIKGMRKS-ERR 1846
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1847 IKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQA 1882
>sp|P02563|MYH6_RAT Myosin-6 OS=Rattus norvegicus GN=Myh6 PE=2 SV=2
Length = 1938
Score = 34.7 bits (78), Expect = 2.0, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1738 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1797
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1798 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1847
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1848 IKELTYQTEEDKKNLVRLQDLVDKLQLKVKAYKRQA 1883
>sp|P13539|MYH6_MESAU Myosin-6 OS=Mesocricetus auratus GN=MYH6 PE=2 SV=2
Length = 1939
Score = 34.7 bits (78), Expect = 2.1, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1739 LQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1798
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ N +EA +Q+++ K R S +
Sbjct: 1799 LDEAEQIALKGGKKQLQ-KLEARVRELENELEA--------EQKRNAESVKGMRKS-ERR 1848
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1849 IKELTYQTEEDKKNLVRLQDLVDKLQLKVKAYKRQA 1884
>sp|Q3IEY7|PROA_PSEHT Gamma-glutamyl phosphate reductase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=proA PE=3 SV=1
Length = 415
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 287 LKAAMAINS---SVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDL 343
LK++ AI S SVLA+ +P A + +P + L +++ + + D P ++
Sbjct: 151 LKSSQAIASVMHSVLAKHNLPEALISVIPDPDRGLLMELMQQRDSIDLIIPRGGEGLINF 210
Query: 344 SSEHHTLEVANRIEAAVHVWKQKDQR-----KHLSHSKSRRSSWGGKVKGLV 390
+E+ T+ V + H++ KD L + K++R+ ++GLV
Sbjct: 211 VTENSTIPVIQHFKGVCHLYVDKDADLEVAINLLLNGKTQRTGVCNALEGLV 262
>sp|Q1MIE8|RPOC_RHIL3 DNA-directed RNA polymerase subunit beta' OS=Rhizobium
leguminosarum bv. viciae (strain 3841) GN=rpoC PE=3 SV=1
Length = 1402
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 428 QYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSRGGLSGLP 487
+YNK +++++ + E +A +MARI V F D+ T R SI + S G G P
Sbjct: 678 KYNK-----VVDAWGKATEKVAEEMMARIKAVEF-DEKTGRQKPMNSIYMMSHSGARGSP 731
Query: 488 IQKR--------MSPSPFSIQHTPYASPF 508
Q R M+ I TP S F
Sbjct: 732 NQMRQLGGMRGLMAKPSGEIIETPIISNF 760
>sp|B3PW60|RPOC_RHIE6 DNA-directed RNA polymerase subunit beta' OS=Rhizobium etli (strain
CIAT 652) GN=rpoC PE=3 SV=1
Length = 1402
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 428 QYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSRGGLSGLP 487
+YNK +++++ + E +A +MARI V F D+ T R SI + S G G P
Sbjct: 678 KYNK-----VVDAWGKATEKVAEEMMARIKAVEF-DENTGRQKPMNSIYMMSHSGARGSP 731
Query: 488 IQKR--------MSPSPFSIQHTPYASPF 508
Q R M+ I TP S F
Sbjct: 732 NQMRQLGGMRGLMAKPSGEIIETPIISNF 760
>sp|Q2K9M3|RPOC_RHIEC DNA-directed RNA polymerase subunit beta' OS=Rhizobium etli (strain
CFN 42 / ATCC 51251) GN=rpoC PE=3 SV=1
Length = 1402
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 428 QYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAAAESISLFSRGGLSGLP 487
+YNK +++++ + E +A +MARI V F D+ T R SI + S G G P
Sbjct: 678 KYNK-----VVDAWGKATEKVAEEMMARIKAVEF-DENTGRQKPMNSIYMMSHSGARGSP 731
Query: 488 IQKR--------MSPSPFSIQHTPYASPF 508
Q R M+ I TP S F
Sbjct: 732 NQMRQLGGMRGLMAKPSGEIIETPIISNF 760
>sp|Q18BE7|SYA_CLOD6 Alanine--tRNA ligase OS=Clostridium difficile (strain 630) GN=alaS
PE=3 SV=1
Length = 879
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 320 GDIIYRYITADQFSPEC---LLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSK 376
GD + + F PE + DC +++E+ LEV N + A + KH+ K
Sbjct: 487 GDKVSIVLDNTTFYPEGGGQVGDCGLITNENLVLEVLNTKKGA------NNSIKHIGIIK 540
Query: 377 SRRSSWGGKVKGLVADSEKNHSLA--HRAETLLH 408
S R S G KVK LV D E S A H A LLH
Sbjct: 541 SGRISNGDKVKTLV-DRETRMSAARNHSATHLLH 573
>sp|Q5BLE2|FA73B_DANRE Protein FAM73B OS=Danio rerio GN=fam73b PE=2 SV=1
Length = 596
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 342 DLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRS-SWGGKVKGLVADSEKNHSLA 400
D ++E+ L E A+ W+ +H SHS++ S S G ++ + +NH A
Sbjct: 171 DANAENLYLMGMELFEEALRKWELALNIRHRSHSRASASNSQGSELVERHSPEVRNHQFA 230
Query: 401 HRAETLLH 408
R ETLLH
Sbjct: 231 ERLETLLH 238
>sp|P13533|MYH6_HUMAN Myosin-6 OS=Homo sapiens GN=MYH6 PE=1 SV=5
Length = 1939
Score = 32.7 bits (73), Expect = 8.5, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 268 LSEDVRKKLQQCRDCTNQILKAAM--AINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
L +V + +Q+CR+ + KA A+ + L + + +A+LE + KN + + D+ +R
Sbjct: 1739 LQSEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHR 1798
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
A+Q + + L E E+ +EA +Q+++ K R S +
Sbjct: 1799 LDEAEQIALKGGKKQLQ-KLEARVRELEGELEA--------EQKRNAESVKGMRKS-ERR 1848
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTA 421
+K L +E++ R + L+ L+L+ + A
Sbjct: 1849 IKELTYQTEEDKKNLLRLQDLVDKLQLKVKAYKRQA 1884
>sp|Q555D2|Y6503_DICDI Uncharacterized protein DDB_G0274915 OS=Dictyostelium discoideum
GN=DDB_G0274915 PE=4 SV=2
Length = 1839
Score = 32.7 bits (73), Expect = 9.1, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 505 ASPFGTPTFCSSTPVGGSPGRVPTA 529
+SPFG P+ SSTP G SP PT+
Sbjct: 1654 SSPFGAPSSTSSTPFGASPFGAPTS 1678
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,670,716
Number of Sequences: 539616
Number of extensions: 10060670
Number of successful extensions: 27825
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 27437
Number of HSP's gapped (non-prelim): 335
length of query: 574
length of database: 191,569,459
effective HSP length: 123
effective length of query: 451
effective length of database: 125,196,691
effective search space: 56463707641
effective search space used: 56463707641
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)