Query 008192
Match_columns 574
No_of_seqs 96 out of 121
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 20:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ntx_A EMB|CAB41934.1, prone8; 100.0 2E-197 6E-202 1461.4 25.3 358 90-471 5-363 (365)
2 2dae_A KIAA0733 protein; mitog 66.4 3.3 0.00011 34.8 2.6 35 405-439 12-48 (75)
3 1wgl_A TOLL-interacting protei 54.1 9.5 0.00033 30.0 3.1 34 404-437 10-43 (59)
4 1b63_A MUTL; DNA mismatch repa 42.0 29 0.00098 34.2 5.1 123 77-227 54-195 (333)
5 4h63_V Mediator of RNA polymer 39.3 52 0.0018 29.8 5.9 67 394-467 11-77 (135)
6 2dhy_A CUE domain-containing p 39.0 22 0.00076 28.8 3.2 33 405-437 20-52 (67)
7 1h7s_A PMS1 protein homolog 2; 30.5 49 0.0017 33.3 4.8 122 78-227 65-206 (365)
8 3o0y_A Lipoprotein; structural 29.7 2E+02 0.0067 31.3 9.5 81 266-363 232-323 (609)
9 2oz8_A MLL7089 protein; struct 29.1 36 0.0012 33.7 3.5 51 94-144 62-126 (389)
10 2qq6_A Mandelate racemase/muco 24.1 58 0.002 32.4 4.0 27 118-144 87-114 (410)
11 2fym_A Enolase; RNA degradosom 23.9 64 0.0022 32.7 4.3 29 115-143 103-132 (431)
12 2o4w_A Lysozyme; protein foldi 23.4 77 0.0026 28.7 4.3 43 382-424 39-87 (171)
No 1
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=100.00 E-value=1.6e-197 Score=1461.39 Aligned_cols=358 Identities=54% Similarity=0.908 Sum_probs=308.4
Q ss_pred CCChhHHHHHHHHHHHhhhccCCCCCCcchhhHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhhcceeeeccceeE
Q 008192 90 DTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIV 169 (574)
Q Consensus 90 ~~~~se~E~MKERFaKLLLGEDMSGggKGV~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmdwLLSVsD~IV 169 (574)
+...+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+|||||||||||||||||
T Consensus 5 ~~~~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~IV 84 (365)
T 2ntx_A 5 ERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIV 84 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTSSCCSCCHHHHHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGCE
T ss_pred cCCchHHHHHHHHHHHHhhcCCCCCCCCcccHHHHHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeeccceeE
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecccccCCCceEEeeccccccccccCchhHHHHHHHHHHHhhccCC-CeeEEEeCCccccCCCCCCCCCCCCCCCCC
Q 008192 170 ELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCE-TEFWYVDRGIVVGDGGDRDAFSSMVPSGRP 248 (574)
Q Consensus 170 ElvPs~Q~~~dG~~~EVM~~rpRsDl~~NLPALrKLD~MLle~LDsF~d-tEFWYvd~g~~a~~~~~~~~~~~s~s~r~~ 248 (574)
|||||+|++|||+++|||+||||+|||||||||||||+||||+||||+| ||||||++|+ ++ +.++.
T Consensus 85 E~vPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLle~LDsf~d~tEFWYv~~g~-----~~--------~~~~~ 151 (365)
T 2ntx_A 85 EFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDS-----EE--------GQQAR 151 (365)
T ss_dssp EEEEC----------CCEEEEECHHHHTHHHHHHHHHHHHHHHHHGGGSCCCCEEC------------------------
T ss_pred EeccccccCCCCceEEEeeccccchhhcCcHHHHHHHHHHHHHHHhCCCCCeeEEecCCC-----Cc--------cccCC
Confidence 9999999999999999999999999999999999999999999999999 9999999994 12 12567
Q ss_pred ccccCccccccCCCCCCCCCCHHHHHHhhhhhhhHHHHHHHHHHhhhhhhccCCCcHHHHhhcccCCccchhHHHHHHhh
Q 008192 249 SVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYIT 328 (574)
Q Consensus 249 ~~R~eeKWWLP~P~VPp~GLSe~~RK~L~~qrd~~nQIlKAAmAINs~vL~EMeVPe~y~esLPKnGrasLGD~iYr~iT 328 (574)
.+|||+|||||+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||
T Consensus 152 ~~r~eeKWWLP~p~VP~~GLSe~~RK~L~~qrd~~~QIlKAAmAIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it 231 (365)
T 2ntx_A 152 NDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSIT 231 (365)
T ss_dssp ---------CCCEECCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHSCSCHHHHHCHHHHHHHT
T ss_pred cccccccccCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhHhHhhcCCCcHHHHHhcccccccccHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHhhhcCCCchhhHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCccccccccccchhhHHHHHHHHHHHHH
Q 008192 329 ADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLH 408 (574)
Q Consensus 329 ~d~Fspe~lL~~ldLssEH~aLe~aNRiEAai~vWrrK~~~k~~~~~~~~ksSWg~~Vkd~~~d~dK~e~laeRAEtlL~ 408 (574)
+|+|||||||+||||+|||+|||+||||||||||||||++.+ ++|+|||.+| +.|||++|++|||+||+
T Consensus 232 ~d~Fspe~ll~~ldlssEH~~le~anRiEAsi~vWrrk~~~k------~~kssW~~~~-----~~dK~~~l~eRAEtlL~ 300 (365)
T 2ntx_A 232 EEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTK------DTKSSWGSAV-----SLEKRELFEERAETILV 300 (365)
T ss_dssp CSSCCHHHHHHTSCCCSHHHHHHHHHHHHHHHHHHHHC-------------------------CHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHhhcCC------CCCCCCcccc-----chhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875 4789997644 58999999999999999
Q ss_pred HHHhhCCCCCcchhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccc
Q 008192 409 SLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATKRCAA 471 (574)
Q Consensus 409 ~LKqRfPgLpQT~LD~sKIQyNKDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~l~k~~~~ 471 (574)
||||||||||||+||++||||||||||||||||||||||||||||+|||||||+|++++++..
T Consensus 301 ~LKqRfPglpQTsLD~sKIQyNkDVG~aILESYSRvLesLAf~I~sRIdDvL~~D~~~~~~~~ 363 (365)
T 2ntx_A 301 LLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIEDVLYTDTLALKQTL 363 (365)
T ss_dssp HHHHHCTTCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCCCCchHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 999999999999999999999999999999999999999999999999999999999998753
No 2
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.40 E-value=3.3 Score=34.85 Aligned_cols=35 Identities=31% Similarity=0.564 Sum_probs=25.3
Q ss_pred HHHHHHHhhCCCCCcchhhhhhhh--hcchhhHHHHH
Q 008192 405 TLLHSLRLRFPGLPQTALDMNKIQ--YNKDVGQSILE 439 (574)
Q Consensus 405 tlL~~LKqRfPgLpQT~LD~sKIQ--yNKDVG~aILE 439 (574)
.|++-||||||.+|+...--+=.| +|.|---.+|.
T Consensus 12 qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~ 48 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLS 48 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHH
Confidence 378899999999999988765555 55555544443
No 3
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=54.10 E-value=9.5 Score=30.00 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhhcchhhHHH
Q 008192 404 ETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSI 437 (574)
Q Consensus 404 EtlL~~LKqRfPgLpQT~LD~sKIQyNKDVG~aI 437 (574)
|.-+..|+.-||++.+..+..-=..+|.||..||
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI 43 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAI 43 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4567789999999999988888888888888776
No 4
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=41.97 E-value=29 Score=34.22 Aligned_cols=123 Identities=24% Similarity=0.341 Sum_probs=65.4
Q ss_pred ccceeccCCCCCCCCChhHHHHHHHHHHHhhhc--cC----CCCCCcchhhHHHHHHHHhHhHHhhhccccccCCCchhH
Q 008192 77 KDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLG--ED----MSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQK 150 (574)
Q Consensus 77 ~~~~~~~~k~~~~~~~~se~E~MKERFaKLLLG--ED----MSGggKGV~tALAiSNAITNL~AtVFGelwrLEPL~~ek 150 (574)
..+.+.|.+. .....|++..-+||+.-=.. +| .+.|+.|+ |||.-+++..|..+. ++ .+.
T Consensus 54 ~~i~V~DnG~---Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~--gl~si~~vs~l~v~s----~~-----~~~ 119 (333)
T 1b63_A 54 KLIRIRDNGC---GIKKDELALALARHATSKIASLDDLEAIISLGFRGE--ALASISSVSRLTLTS----RT-----AEQ 119 (333)
T ss_dssp SEEEEEECSC---CCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSC--HHHHHHTTSEEEEEE----EC-----TTC
T ss_pred eEEEEEEcCC---CcCHHHHHHhhhcccccCccccchhhhccccCcccc--chhhhhcCCcEEEEE----ec-----CCC
Confidence 3455566554 55567888777777632111 12 36778888 455555554432211 00 111
Q ss_pred Hhhhhhhcceeeeccc--eeEEeeecccccCCCceEEeeccccccccccCchhHHHH-----------HHHHHHHhhccC
Q 008192 151 KAMWRREMQWLLCVSD--SIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKL-----------DAMLIGMLDGFC 217 (574)
Q Consensus 151 K~mWrREmdwLLSVsD--~IVElvPs~Q~~~dG~~~EVM~~rpRsDl~~NLPALrKL-----------D~MLle~LDsF~ 217 (574)
.. .|-+.... ..++..|. ..+.||+++| .||+-|+|+-+|. ..++-.+.-.+.
T Consensus 120 ~~------~~~~~~~g~~~~~~~~~~--~~~~GT~V~v------~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p 185 (333)
T 1b63_A 120 QE------AWQAYAEGRDMNVTVKPA--AHPVGTTLEV------LDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARF 185 (333)
T ss_dssp SS------EEEEEEETTTTEEEEEEE--CCCSEEEEEE------ESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred ce------EEEEEEcCCcceEeeecc--cCCCCCEEEE------ecccccchhhhhhhccHHHHHHHHHHHHHHHhccCC
Confidence 11 23222111 14566664 3578999999 6899999997663 233333333334
Q ss_pred CCeeEEEeCC
Q 008192 218 ETEFWYVDRG 227 (574)
Q Consensus 218 dtEFWYvd~g 227 (574)
+-.|-+.+.|
T Consensus 186 ~v~~~l~~ng 195 (333)
T 1b63_A 186 DVTINLSHNG 195 (333)
T ss_dssp TCEEEEEETT
T ss_pred CcEEEEEECC
Confidence 4566665544
No 5
>4h63_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=39.28 E-value=52 Score=29.76 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 008192 394 EKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLFVDDATK 467 (574)
Q Consensus 394 dK~e~laeRAEtlL~~LKqRfPgLpQT~LD~sKIQyNKDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~l~k 467 (574)
.|-+.|-.|..+....|-++| +.-+..++|| |+|-+.+..|+|. ++.-|-+|+.-++|+|-.=+-.|
T Consensus 11 ~k~~~l~~rid~~v~~ll~~f----~~iv~lA~v~-~~~~~~~A~e~~~--~~~~~~~~vra~e~LL~L~r~lK 77 (135)
T 4h63_V 11 QRTNTLNSSIDNATLTILSRF----QDILDIAINE-GKDKYTVAPEVYQ--IECHTVSMVRAVEQLLDVSRQIK 77 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCT-TCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcC-CCcHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888888 4457778888 8999999999997 77788889999999886544444
No 6
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.04 E-value=22 Score=28.76 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHHHhhCCCCCcchhhhhhhhhcchhhHHH
Q 008192 405 TLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSI 437 (574)
Q Consensus 405 tlL~~LKqRfPgLpQT~LD~sKIQyNKDVG~aI 437 (574)
..+..||+-||.+....+..-=...|.||..||
T Consensus 20 ~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aI 52 (67)
T 2dhy_A 20 QAMDDFKTMFPNMDYDIIECVLRANSGAVDATI 52 (67)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 356679999999999888877777888888776
No 7
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=30.54 E-value=49 Score=33.27 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=62.2
Q ss_pred cceeccCCCCCCCCChhHHHHHHHHHHHh--hhccCC----CCCCcchhhHHHHHHHHhHhHHhhhccccccCCCchhHH
Q 008192 78 DVVVWDEKPEKSDTDLSEVEMMKERFAKL--LLGEDM----SGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKK 151 (574)
Q Consensus 78 ~~~~~~~k~~~~~~~~se~E~MKERFaKL--LLGEDM----SGggKGV~tALAiSNAITNL~AtVFGelwrLEPL~~ekK 151 (574)
.|.+.|.+. .....|++.+=+||+.- =-.+|. ++|-+|+ |||.-+|+..|..+. ++ .+.
T Consensus 65 ~I~V~DnG~---Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~--gl~si~~vs~v~v~t----~~-----~~~- 129 (365)
T 1h7s_A 65 LIEVSDNGC---GVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGE--ALSSLCALSDVTIST----CH-----ASA- 129 (365)
T ss_dssp EEEEEECSC---CCCGGGSGGGGC----------CCTTCSEEESSSSS--HHHHHHHHSEEEEEE----EC-----TTC-
T ss_pred EEEEEECCC---CcCHHHHHHHhhhccccccccccchhcccccCCCCc--hhhhhhhhccEEEEE----cc-----CCC-
Confidence 455555543 44456666666777632 222452 4566687 455555554332211 00 011
Q ss_pred hhhhhhcceeeec--cceeEEeeecccccCCCceEEeeccccccccccCchhHHH------------HHHHHHHHhhccC
Q 008192 152 AMWRREMQWLLCV--SDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKK------------LDAMLIGMLDGFC 217 (574)
Q Consensus 152 ~mWrREmdwLLSV--sD~IVElvPs~Q~~~dG~~~EVM~~rpRsDl~~NLPALrK------------LD~MLle~LDsF~ 217 (574)
+..|-+.. ...+++.-|. ..+.||+++| .||+-|+|+-|| +-.++-++.-.+.
T Consensus 130 -----~~~~~~~~~~~G~~~~~~~~--~~~~GT~V~v------~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p 196 (365)
T 1h7s_A 130 -----KVGTRLMFDHNGKIIQKTPY--PRPRGTTVSV------QQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISA 196 (365)
T ss_dssp -----SSCEEEEECTTSCEEEEEEC--CCCSEEEEEE------ESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCT
T ss_pred -----cceEEEEEcCCCceEeeccc--CCCCCcEEEE------eecccccchhhhhhccchHHHHHHHHHhhhhhhhcCC
Confidence 11233322 2234443342 3578999999 499999998555 2334444555556
Q ss_pred CCeeEEEeCC
Q 008192 218 ETEFWYVDRG 227 (574)
Q Consensus 218 dtEFWYvd~g 227 (574)
+-.|-+.+.|
T Consensus 197 ~v~f~l~~~~ 206 (365)
T 1h7s_A 197 GIRVSCTNQL 206 (365)
T ss_dssp TCEEEEEEEC
T ss_pred ceEEEEEecC
Confidence 6888887765
No 8
>3o0y_A Lipoprotein; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, lipid protein; 1.70A {Colwellia psychrerythraea}
Probab=29.75 E-value=2e+02 Score=31.31 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=46.2
Q ss_pred CCCCHHHHHHhhhhhhhHHHHHHHHHHhhhhhhccCCCcHHHHhhcccCCcc-----ch--hHHHHHHh----hcCCCCh
Q 008192 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKA-----CL--GDIIYRYI----TADQFSP 334 (574)
Q Consensus 266 ~GLSe~~RK~L~~qrd~~nQIlKAAmAINs~vL~EMeVPe~y~esLPKnGra-----sL--GD~iYr~i----T~d~Fsp 334 (574)
+||+++.++.|..+ |..||+..|+--+.==-.|++.|-.+|+. .| |+..|+++ |.-..+|
T Consensus 232 ~~l~~~~~~~l~~~---------a~~ai~~~v~PAy~~l~~~l~~l~p~a~~~~G~~~lP~G~~~Y~~~l~~~ttt~~t~ 302 (609)
T 3o0y_A 232 DSLTTEQKQSLITQ---------VIAKVSQVVYPAYQSVEKASEQLLSEARSESGIWAQPKGSVYYQDAIKQLGDSELSP 302 (609)
T ss_dssp TTSCHHHHHHHHHH---------HHHHHHHTHHHHHHHHHHHHHHHTTTSBSCCSGGGSTTHHHHHHHHHHHHHCCCSCH
T ss_pred ccCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcchhcCCChHHHHHHHHHHhhCCCCCH
Confidence 46999888877544 22334444332222222344444333333 33 99999987 5555788
Q ss_pred hhHhhhcCCCchhhHHHHhhhhHHHHHHH
Q 008192 335 ECLLDCLDLSSEHHTLEVANRIEAAVHVW 363 (574)
Q Consensus 335 e~lL~~ldLssEH~aLe~aNRiEAai~vW 363 (574)
|++... .++-..||.+.|..=
T Consensus 303 dEi~~~--------gl~ev~ri~~em~~i 323 (609)
T 3o0y_A 303 TQIHQI--------GLDEVARISGVMNEI 323 (609)
T ss_dssp HHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHH--------HHHHHHHHHHHHHHH
Confidence 887543 355666777776543
No 9
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=29.12 E-value=36 Score=33.68 Aligned_cols=51 Identities=20% Similarity=0.121 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhhhccC-------CCCCCcc------hhhHHHHHHHHhHhHHhhhcc-ccccC
Q 008192 94 SEVEMMKERFAKLLLGED-------MSGGGKG------VCTALAISNAITNLSATVFGE-LWRLE 144 (574)
Q Consensus 94 se~E~MKERFaKLLLGED-------MSGggKG------V~tALAiSNAITNL~AtVFGe-lwrLE 144 (574)
+-+..+++.++.+|+|+| +-+++.| .+...||..|+-.|.+-..|. +|+|=
T Consensus 62 ~~~~~i~~~l~p~l~G~d~~~~~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lL 126 (389)
T 2oz8_A 62 EIESVFEHEVWPSLKGNRAIALVHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLL 126 (389)
T ss_dssp HHHHHHHHHTHHHHTTSCHHHHTTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHc
Confidence 345667777999999998 4334444 467789999999999999887 77653
No 10
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=24.13 E-value=58 Score=32.39 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHhHhHHhhhcc-ccccC
Q 008192 118 GVCTALAISNAITNLSATVFGE-LWRLE 144 (574)
Q Consensus 118 GV~tALAiSNAITNL~AtVFGe-lwrLE 144 (574)
+..+..||+.|+-.|.|-..|. +|+|=
T Consensus 87 ~~~A~~aid~AlwDl~gk~~g~Pl~~lL 114 (410)
T 2qq6_A 87 VITALSGIETALWDLAGKLQGVPVYRLL 114 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGGT
T ss_pred HHHHHHHHHHHHHHHhHhHcCCcHHHHc
Confidence 4566789999999999999997 77763
No 11
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=23.89 E-value=64 Score=32.73 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=24.5
Q ss_pred CCcchhhHHHHHHHHhHhHHhhhcc-cccc
Q 008192 115 GGKGVCTALAISNAITNLSATVFGE-LWRL 143 (574)
Q Consensus 115 ggKGV~tALAiSNAITNL~AtVFGe-lwrL 143 (574)
++.|..+..||+.|+-.+.|-..|. +|+|
T Consensus 103 ~~~g~~A~~avd~AlwD~~ak~~g~Pl~~l 132 (431)
T 2fym_A 103 SKFGANAILAVSLANAKAAAAAKGMPLYEH 132 (431)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4556688899999999999999997 7765
No 12
>2o4w_A Lysozyme; protein folding, protein stability, protein engineering, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=23.44 E-value=77 Score=28.73 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=29.4
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHhhCC------CCCcchhhh
Q 008192 382 WGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFP------GLPQTALDM 424 (574)
Q Consensus 382 Wg~~Vkd~~~d~dK~e~laeRAEtlL~~LKqRfP------gLpQT~LD~ 424 (574)
+|..|++-+.+.+=.++|+........+++..++ .|+|...|+
T Consensus 39 ~G~~v~~~iT~~ea~~ll~~Dl~~~~~~v~~~~~~~~~~v~l~q~q~dA 87 (171)
T 2o4w_A 39 IGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAA 87 (171)
T ss_dssp HTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCHHHHHH
T ss_pred cccccCCCcCHHHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHHHH
Confidence 4445556677777778888777777777777665 577766654
Done!