Query 008192
Match_columns 574
No_of_seqs 96 out of 121
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 20:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008192.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008192hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v97a5 d.133.1.1 (A:695-1332) 35.8 10 0.00073 38.0 3.3 27 124-150 579-610 (638)
2 d1t3qb2 d.133.1.1 (B:166-786) 33.9 13 0.00095 36.6 3.8 36 120-157 583-619 (621)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 30.8 17 0.0013 27.2 3.1 35 403-437 9-43 (59)
4 d1c1da2 c.58.1.1 (A:1-148) Phe 29.7 6 0.00044 33.9 0.4 51 70-122 71-124 (148)
5 d1mn3a_ a.5.2.4 (A:) Vacuolar 24.7 42 0.003 24.6 4.3 34 404-437 13-46 (54)
6 d1ffvb2 d.133.1.1 (B:147-803) 22.9 33 0.0024 33.9 4.5 38 119-157 615-652 (657)
7 d2ia7a1 d.373.1.1 (A:23-133) U 22.3 25 0.0018 27.5 2.8 38 122-159 8-57 (111)
8 d1ly1a_ c.37.1.1 (A:) Polynucl 20.0 51 0.0037 24.7 4.2 36 309-344 8-44 (152)
9 d1n62b2 d.133.1.1 (B:147-809) 19.7 39 0.0029 33.3 4.3 39 120-159 622-660 (663)
10 d1h7sa2 d.122.1.2 (A:29-231) D 17.6 48 0.0035 28.2 3.9 39 158-204 103-143 (203)
No 1
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=35.84 E-value=10 Score=37.96 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=21.9
Q ss_pred HHHHHHhHhHHhhhcc----cccc-CCCchhH
Q 008192 124 AISNAITNLSATVFGE----LWRL-EPLAPQK 150 (574)
Q Consensus 124 AiSNAITNL~AtVFGe----lwrL-EPL~~ek 150 (574)
||.|||-|....-|.. .+.+ =|+.|||
T Consensus 579 AI~nAi~~A~g~~~~~~~~~~~~~~lP~TPer 610 (638)
T d1v97a5 579 AIKDAIRAARAQHTNNNTKELFRLDSPATPEK 610 (638)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCCCCCBSCCHHH
T ss_pred HHHHHHHHhhhhhccccccccccCCCCCCHHH
Confidence 9999999999998873 4444 4999997
No 2
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]}
Probab=33.89 E-value=13 Score=36.56 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=24.7
Q ss_pred hhHHHHHHHHhHhHHhhhc-cccccCCCchhHHhhhhhh
Q 008192 120 CTALAISNAITNLSATVFG-ELWRLEPLAPQKKAMWRRE 157 (574)
Q Consensus 120 ~tALAiSNAITNL~AtVFG-elwrLEPL~~ekK~mWrRE 157 (574)
++|=||.|||.|-... +| .+.+| |+.|||=-+.-+|
T Consensus 583 ~~~~AI~nAi~~A~g~-~~~r~~~l-P~tpe~v~~al~~ 619 (621)
T d1t3qb2 583 SAPAAVVAAVNDALAH-LEVVIETV-PITPERIFRSIQE 619 (621)
T ss_dssp HHHHHHHHHHHHHHGG-GTCCCCEE-SCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCC-cCCcccCC-CCCHHHHHHHHhh
Confidence 4667999999998653 33 34444 9999996655443
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.85 E-value=17 Score=27.21 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhCCCCCcchhhhhhhhhcchhhHHH
Q 008192 403 AETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSI 437 (574)
Q Consensus 403 AEtlL~~LKqRfPgLpQT~LD~sKIQyNKDVG~aI 437 (574)
.|..+..||.-||++-...+..-=++.|-+|+.||
T Consensus 9 ~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~ai 43 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAI 43 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHH
T ss_pred cHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 45668999999999987776665555555555553
No 4
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}
Probab=29.68 E-value=6 Score=33.90 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=37.1
Q ss_pred cccccCCccceeccCCCCCCCCChhHHHHHHHHHHHh---hhccCCCCCCcchhhH
Q 008192 70 MVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKL---LLGEDMSGGGKGVCTA 122 (574)
Q Consensus 70 ~lp~~g~~~~~~~~~k~~~~~~~~se~E~MKERFaKL---LLGEDMSGggKGV~tA 122 (574)
-||+=|+|.+... .|..+..++.|.+.+-++|++. |.|.|..|.-.|++.+
T Consensus 71 glp~GGgKg~I~~--dp~~~~~~~~e~~~l~r~~~~~l~~l~G~yi~a~DvGt~~~ 124 (148)
T d1c1da2 71 NLPMGGGKSVIAL--PAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSA 124 (148)
T ss_dssp TCSCEEEEEEEEC--SSCGGGCCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCCHH
T ss_pred cCCCCCcceEEec--CCCcCCCCHHHHHHHHHHHHHHHHHhCCcEeecCCCCCCHH
Confidence 4787778876443 3555677788999888888877 5578888777777654
No 5
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.69 E-value=42 Score=24.63 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhhcchhhHHH
Q 008192 404 ETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSI 437 (574)
Q Consensus 404 EtlL~~LKqRfPgLpQT~LD~sKIQyNKDVG~aI 437 (574)
+..+..||.-||++....+..-=...|-+|+.||
T Consensus 13 ~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~ai 46 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCV 46 (54)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4578999999999998888777777777777765
No 6
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=22.85 E-value=33 Score=33.93 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhh
Q 008192 119 VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRE 157 (574)
Q Consensus 119 V~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrRE 157 (574)
+++|=||.|||-|-... .|--.+==||.|||=-..-+|
T Consensus 615 ~~~~~Ai~nAI~~A~~~-tG~r~~~lP~Tpe~v~~al~~ 652 (657)
T d1ffvb2 615 VGSIPTFTAAVVDAFAH-VGVTHLDMPHTSYRVWKSLKE 652 (657)
T ss_dssp HHHHHHHHHHHHHHHGG-GTCCCCCSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh-hCCccCCCCCCHHHHHHHHHh
Confidence 45777899999987432 365444449999987666555
No 7
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=22.27 E-value=25 Score=27.50 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHHHhHhHHhhhcc----------cccc--CCCchhHHhhhhhhcc
Q 008192 122 ALAISNAITNLSATVFGE----------LWRL--EPLAPQKKAMWRREMQ 159 (574)
Q Consensus 122 ALAiSNAITNL~AtVFGe----------lwrL--EPL~~ekK~mWrREmd 159 (574)
.=+|-++|-||--|-+|| +|.| ||+.+.-+...++++.
T Consensus 8 ee~I~q~i~nll~T~~GEr~~~p~fG~~l~~llFe~~~~~~~~~i~~~I~ 57 (111)
T d2ia7a1 8 EEDIAESIRIILGTARGERVMRPDFGCGIHDRVFSVINTTTLGLIENEVK 57 (111)
T ss_dssp HHHHHHHHHHHHTCCTTSSTTCTTCSCGGGGCCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccccCCccccEechhhhhhcchhHHHHHHHHHH
Confidence 347889999999999999 8888 9999999999999884
No 8
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=20.00 E-value=51 Score=24.70 Aligned_cols=36 Identities=8% Similarity=-0.032 Sum_probs=27.1
Q ss_pred hhcccCCccchhHHHHHHh-hcCCCChhhHhhhcCCC
Q 008192 309 ETLPKNGKACLGDIIYRYI-TADQFSPECLLDCLDLS 344 (574)
Q Consensus 309 esLPKnGrasLGD~iYr~i-T~d~Fspe~lL~~ldLs 344 (574)
--+|=+||++|...|.+.. ..-.++.+.+...+...
T Consensus 8 ~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~ 44 (152)
T d1ly1a_ 8 IGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAH 44 (152)
T ss_dssp ECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcc
Confidence 3478899999999887654 57778888887665433
No 9
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=19.65 E-value=39 Score=33.32 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhhcc
Q 008192 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQ 159 (574)
Q Consensus 120 ~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmd 159 (574)
++|=||.|||-|-.+ .+|--.+=-||.|||=-+.-+|+.
T Consensus 622 ~~~~Ai~nAI~~A~~-~~G~r~~~lP~tpe~v~~~~~~~~ 660 (663)
T d1n62b2 622 GGVPCFSNAVNDAYA-FLNAGHIQMPHDAWRLWKVGEQLG 660 (663)
T ss_dssp HHHHHHHHHHHHHHH-TTTCCCCCSCCCHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHH-hcCCccccCCCCHHHHHHHHHHcC
Confidence 478899999998764 578766777999999866667775
No 10
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.60 E-value=48 Score=28.17 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=29.0
Q ss_pred cceeeec--cceeEEeeecccccCCCceEEeeccccccccccCchhHHH
Q 008192 158 MQWLLCV--SDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKK 204 (574)
Q Consensus 158 mdwLLSV--sD~IVElvPs~Q~~~dG~~~EVM~~rpRsDl~~NLPALrK 204 (574)
..|-+.+ -..+++.-|.. .+.||+++| .||+-|+|+-||
T Consensus 103 ~~~~i~~~~~g~~~~~~~~~--~~~GTtV~v------~~LF~n~PvRrk 143 (203)
T d1h7sa2 103 VGTRLMFDHNGKIIQKTPYP--RPRGTTVSV------QQLFSTLPVRHK 143 (203)
T ss_dssp SCEEEEECTTSCEEEEEECC--CCSEEEEEE------ESTTTTSHHHHH
T ss_pred hhEEEEEeccCceeeeeecc--cccceEEEe------ehhhhhHHHHHH
Confidence 3444443 34688888874 567999999 599999999887
Done!