Query 008193
Match_columns 574
No_of_seqs 443 out of 1771
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:22:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmu_A Homeobox protein goosec 99.7 2.2E-18 7.6E-23 140.5 7.2 60 439-498 5-64 (70)
2 2cra_A Homeobox protein HOX-B1 99.7 1.7E-18 6E-23 141.3 6.1 57 439-495 5-61 (70)
3 2dmq_A LIM/homeobox protein LH 99.7 4.8E-18 1.6E-22 141.8 8.6 64 439-502 5-68 (80)
4 2da2_A Alpha-fetoprotein enhan 99.7 2.2E-18 7.5E-23 140.4 5.9 58 439-496 5-62 (70)
5 2e1o_A Homeobox protein PRH; D 99.7 3.5E-18 1.2E-22 139.4 7.1 60 439-498 5-64 (70)
6 2da1_A Alpha-fetoprotein enhan 99.7 2.2E-18 7.4E-23 140.4 5.7 59 438-496 4-62 (70)
7 2dms_A Homeobox protein OTX2; 99.7 6.1E-18 2.1E-22 141.4 8.4 61 439-499 5-65 (80)
8 2cue_A Paired box protein PAX6 99.7 5.6E-18 1.9E-22 141.8 7.6 64 439-502 5-68 (80)
9 2dmt_A Homeobox protein BARH-l 99.7 3.1E-18 1E-22 143.4 6.0 59 438-496 14-72 (80)
10 1nk2_P Homeobox protein VND; h 99.7 7.8E-18 2.7E-22 140.0 8.1 62 439-500 7-68 (77)
11 2djn_A Homeobox protein DLX-5; 99.7 2.3E-18 7.9E-23 140.5 4.8 58 438-495 4-61 (70)
12 2da3_A Alpha-fetoprotein enhan 99.7 2.8E-18 9.6E-23 142.9 5.4 59 438-496 14-72 (80)
13 1ig7_A Homeotic protein MSX-1; 99.7 6.4E-18 2.2E-22 132.7 6.7 55 442-496 1-55 (58)
14 1jgg_A Segmentation protein EV 99.7 6.1E-18 2.1E-22 134.0 6.3 57 442-498 2-58 (60)
15 2hdd_A Protein (engrailed home 99.7 5.2E-18 1.8E-22 134.8 5.9 55 441-495 3-57 (61)
16 2h1k_A IPF-1, pancreatic and d 99.7 7.5E-18 2.5E-22 134.8 6.5 56 441-496 3-58 (63)
17 2kt0_A Nanog, homeobox protein 99.7 5E-18 1.7E-22 142.9 5.6 59 438-496 19-77 (84)
18 1wh5_A ZF-HD homeobox family p 99.7 7E-18 2.4E-22 141.9 5.9 56 439-494 15-74 (80)
19 1ftt_A TTF-1 HD, thyroid trans 99.7 1.1E-17 3.9E-22 135.8 7.0 58 441-498 2-59 (68)
20 1ahd_P Antennapedia protein mu 99.7 6.5E-18 2.2E-22 137.4 5.5 60 441-500 2-61 (68)
21 2dmn_A Homeobox protein TGIF2L 99.7 1.7E-17 5.9E-22 140.2 8.1 65 438-502 4-71 (83)
22 1fjl_A Paired protein; DNA-bin 99.7 1.2E-17 4E-22 140.1 7.0 62 438-499 15-76 (81)
23 1zq3_P PRD-4, homeotic bicoid 99.7 1.4E-17 4.9E-22 135.2 6.9 60 441-500 2-61 (68)
24 2vi6_A Homeobox protein nanog; 99.7 7.5E-18 2.6E-22 134.3 5.1 55 441-495 3-57 (62)
25 1bw5_A ISL-1HD, insulin gene e 99.7 8E-18 2.7E-22 135.7 5.1 55 441-495 3-57 (66)
26 1puf_A HOX-1.7, homeobox prote 99.7 2.2E-17 7.5E-22 137.2 7.7 62 439-500 11-72 (77)
27 1x2n_A Homeobox protein pknox1 99.7 2.1E-17 7.2E-22 135.8 7.4 61 439-499 5-68 (73)
28 3a01_A Homeodomain-containing 99.7 2E-17 6.7E-22 142.6 7.2 64 438-501 14-77 (93)
29 1akh_A Protein (mating-type pr 99.7 1.2E-17 4E-22 132.5 5.0 55 440-494 4-58 (61)
30 1wh7_A ZF-HD homeobox family p 99.7 1.2E-17 4E-22 140.7 5.2 56 438-494 14-74 (80)
31 1yz8_P Pituitary homeobox 2; D 99.7 9.4E-18 3.2E-22 136.2 4.2 58 441-498 3-60 (68)
32 2da5_A Zinc fingers and homeob 99.7 3.3E-17 1.1E-21 135.7 7.6 56 443-498 9-64 (75)
33 2l7z_A Homeobox protein HOX-A1 99.7 3.2E-17 1.1E-21 135.1 7.2 56 439-494 5-60 (73)
34 1wi3_A DNA-binding protein SAT 99.7 2.6E-17 9E-22 134.4 6.4 56 439-494 5-61 (71)
35 3a02_A Homeobox protein arista 99.7 1.9E-17 6.3E-22 131.2 5.3 55 444-498 2-56 (60)
36 2m0c_A Homeobox protein arista 99.7 3.7E-17 1.3E-21 134.4 7.2 56 439-494 7-62 (75)
37 3rkq_A Homeobox protein NKX-2. 99.7 2.3E-17 7.7E-22 129.0 5.6 54 441-494 2-55 (58)
38 1b8i_A Ultrabithorax, protein 99.7 2.4E-17 8.2E-22 138.5 5.8 60 439-498 18-77 (81)
39 2da4_A Hypothetical protein DK 99.7 1.8E-17 6.1E-22 138.6 4.8 58 439-496 6-67 (80)
40 2k40_A Homeobox expressed in E 99.7 3.6E-17 1.2E-21 132.2 6.2 53 442-494 2-54 (67)
41 2ecc_A Homeobox and leucine zi 99.7 5.7E-17 1.9E-21 135.5 7.3 57 445-502 7-63 (76)
42 2r5y_A Homeotic protein sex co 99.7 3.1E-17 1.1E-21 139.6 5.5 59 439-497 26-84 (88)
43 1puf_B PRE-B-cell leukemia tra 99.7 4.7E-17 1.6E-21 133.7 6.2 59 442-500 2-63 (73)
44 1b72_A Protein (homeobox prote 99.7 4.1E-17 1.4E-21 141.3 6.1 64 439-503 32-95 (97)
45 2cuf_A FLJ21616 protein; homeo 99.7 8E-17 2.7E-21 139.0 7.7 64 438-501 4-82 (95)
46 3a03_A T-cell leukemia homeobo 99.7 5.6E-17 1.9E-21 127.0 6.0 51 446-496 2-52 (56)
47 1uhs_A HOP, homeodomain only p 99.7 9E-17 3.1E-21 131.8 7.3 56 443-498 3-59 (72)
48 2hi3_A Homeodomain-only protei 99.7 1.1E-16 3.7E-21 131.8 7.4 57 442-498 3-60 (73)
49 1du6_A PBX1, homeobox protein 99.7 3.8E-17 1.3E-21 130.9 4.4 54 442-495 4-60 (64)
50 2dn0_A Zinc fingers and homeob 99.7 9.5E-17 3.3E-21 133.1 6.6 51 444-494 11-61 (76)
51 1b72_B Protein (PBX1); homeodo 99.7 6.8E-17 2.3E-21 136.9 5.4 60 442-501 2-64 (87)
52 1k61_A Mating-type protein alp 99.7 9.9E-17 3.4E-21 126.9 6.0 51 445-495 2-55 (60)
53 2ecb_A Zinc fingers and homeob 99.6 2.2E-16 7.6E-21 135.6 8.3 49 446-494 16-64 (89)
54 2ly9_A Zinc fingers and homeob 99.6 1.4E-16 4.9E-21 131.0 6.8 53 442-494 7-59 (74)
55 1le8_B Mating-type protein alp 99.6 9.5E-17 3.2E-21 135.4 5.9 54 443-496 4-60 (83)
56 3nar_A ZHX1, zinc fingers and 99.6 2.2E-16 7.6E-21 136.6 5.8 60 439-499 23-82 (96)
57 1mnm_C Protein (MAT alpha-2 tr 99.6 3.6E-16 1.2E-20 132.8 6.3 56 439-494 25-83 (87)
58 2dmp_A Zinc fingers and homeob 99.6 7.2E-16 2.5E-20 131.9 7.7 52 444-495 16-67 (89)
59 2cqx_A LAG1 longevity assuranc 99.6 1.5E-16 5.3E-21 131.2 2.9 52 443-494 10-62 (72)
60 3nau_A Zinc fingers and homeob 99.6 5.4E-16 1.9E-20 126.1 5.5 52 448-500 11-62 (66)
61 1au7_A Protein PIT-1, GHF-1; c 99.6 7.5E-16 2.6E-20 143.0 5.2 57 439-495 85-141 (146)
62 2da6_A Hepatocyte nuclear fact 99.6 2.2E-15 7.6E-20 132.4 7.8 62 439-500 4-86 (102)
63 2xsd_C POU domain, class 3, tr 99.6 7.1E-16 2.4E-20 145.8 4.7 60 439-498 97-156 (164)
64 3d1n_I POU domain, class 6, tr 99.6 1.4E-15 4.7E-20 141.6 6.3 57 439-495 91-147 (151)
65 1e3o_C Octamer-binding transcr 99.6 1.1E-15 3.6E-20 143.8 5.3 57 439-495 99-155 (160)
66 3k2a_A Homeobox protein MEIS2; 99.6 1.4E-15 4.9E-20 123.6 5.1 54 447-500 4-60 (67)
67 2e19_A Transcription factor 8; 99.6 1.3E-15 4.6E-20 122.9 4.8 49 446-494 8-56 (64)
68 2l9r_A Homeobox protein NKX-3. 99.6 2.4E-15 8.2E-20 123.4 5.7 49 446-494 9-57 (69)
69 1lfb_A Liver transcription fac 99.6 1.5E-15 5.1E-20 132.8 4.0 56 439-494 7-83 (99)
70 2d5v_A Hepatocyte nuclear fact 99.5 1.6E-15 5.4E-20 142.7 4.4 57 439-495 95-151 (164)
71 1x2m_A LAG1 longevity assuranc 99.5 1.8E-15 6.3E-20 122.5 3.5 47 448-494 7-54 (64)
72 3l1p_A POU domain, class 5, tr 99.5 6.7E-15 2.3E-19 137.8 4.5 57 439-495 94-150 (155)
73 2lk2_A Homeobox protein TGIF1; 99.5 7.8E-14 2.7E-18 119.8 7.3 59 446-504 10-71 (89)
74 1wev_A Riken cDNA 1110020M19; 99.4 7.2E-14 2.5E-18 119.6 2.0 62 234-298 12-75 (88)
75 1ic8_A Hepatocyte nuclear fact 99.4 7.2E-14 2.5E-18 135.6 2.0 58 437-494 111-189 (194)
76 1fp0_A KAP-1 corepressor; PHD 99.4 2.9E-13 9.8E-18 116.1 5.0 57 230-296 17-73 (88)
77 2da7_A Zinc finger homeobox pr 99.4 4E-13 1.4E-17 110.3 4.7 45 450-494 14-58 (71)
78 1mm2_A MI2-beta; PHD, zinc fin 99.3 6.8E-13 2.3E-17 106.1 4.8 52 235-296 6-57 (61)
79 2h8r_A Hepatocyte nuclear fact 99.3 7E-13 2.4E-17 130.7 5.5 57 438-494 139-216 (221)
80 2yt5_A Metal-response element- 99.3 2.3E-13 7.8E-18 109.8 0.4 58 235-295 3-61 (66)
81 1xwh_A Autoimmune regulator; P 99.3 7.9E-13 2.7E-17 107.2 2.9 51 235-295 5-55 (66)
82 2l5u_A Chromodomain-helicase-D 99.3 1.3E-12 4.3E-17 104.6 3.8 52 233-294 6-57 (61)
83 2puy_A PHD finger protein 21A; 99.3 1.2E-12 4E-17 104.2 2.9 51 236-296 3-53 (60)
84 2e6r_A Jumonji/ARID domain-con 99.3 1.2E-12 4E-17 113.0 2.6 56 233-295 11-66 (92)
85 2yql_A PHD finger protein 21A; 99.3 1.7E-12 5.9E-17 101.9 3.0 50 235-294 6-55 (56)
86 2lri_C Autoimmune regulator; Z 99.3 2.1E-12 7.3E-17 105.1 3.7 50 235-294 9-58 (66)
87 1f62_A Transcription factor WS 99.3 1.9E-12 6.4E-17 99.5 3.1 48 240-294 2-49 (51)
88 2ku3_A Bromodomain-containing 99.2 1.9E-12 6.6E-17 106.7 2.2 55 235-296 13-67 (71)
89 2e6s_A E3 ubiquitin-protein li 99.2 6.1E-12 2.1E-16 105.3 5.1 55 232-294 21-76 (77)
90 3asl_A E3 ubiquitin-protein li 99.2 7.3E-12 2.5E-16 102.9 4.1 55 232-294 13-68 (70)
91 2l43_A N-teminal domain from h 99.2 3.3E-12 1.1E-16 109.3 1.4 55 235-296 22-76 (88)
92 2kwj_A Zinc finger protein DPF 99.1 9.6E-12 3.3E-16 110.9 2.6 77 213-296 28-109 (114)
93 3o36_A Transcription intermedi 99.1 1.6E-11 5.6E-16 117.2 4.2 50 236-295 2-51 (184)
94 1mh3_A Maltose binding-A1 home 99.1 1.6E-11 5.4E-16 127.4 4.3 52 443-494 367-418 (421)
95 3u5n_A E3 ubiquitin-protein li 99.1 1.4E-11 4.9E-16 119.8 3.3 51 235-295 4-54 (207)
96 3ask_A E3 ubiquitin-protein li 99.1 4.9E-11 1.7E-15 118.0 4.6 54 233-294 170-224 (226)
97 3shb_A E3 ubiquitin-protein li 99.1 5.8E-11 2E-15 99.4 4.1 56 232-294 21-76 (77)
98 3v43_A Histone acetyltransfera 99.0 9.9E-11 3.4E-15 103.9 4.7 62 228-295 51-112 (112)
99 2ro1_A Transcription intermedi 99.0 8.3E-11 2.8E-15 113.4 4.2 48 238-295 2-49 (189)
100 2k16_A Transcription initiatio 99.0 9.2E-11 3.1E-15 96.8 3.0 55 235-296 15-69 (75)
101 2ysm_A Myeloid/lymphoid or mix 99.0 1.6E-10 5.4E-15 102.0 4.3 75 214-295 28-104 (111)
102 2lv9_A Histone-lysine N-methyl 98.9 1E-09 3.4E-14 95.6 4.7 56 231-295 21-76 (98)
103 4gne_A Histone-lysine N-methyl 98.7 3.8E-09 1.3E-13 93.6 3.4 49 235-295 12-62 (107)
104 2vnf_A ING 4, P29ING4, inhibit 98.6 5.3E-09 1.8E-13 83.4 1.3 50 235-295 7-59 (60)
105 1weu_A Inhibitor of growth fam 98.6 4.1E-08 1.4E-12 84.6 6.5 50 235-295 33-85 (91)
106 1wen_A Inhibitor of growth fam 98.6 3.5E-08 1.2E-12 81.2 4.6 50 235-295 13-65 (71)
107 2ysm_A Myeloid/lymphoid or mix 98.6 4E-08 1.4E-12 86.6 4.8 55 234-295 3-57 (111)
108 2lbm_A Transcriptional regulat 98.6 8.6E-09 2.9E-13 95.5 0.5 54 235-296 60-118 (142)
109 2jmi_A Protein YNG1, ING1 homo 98.5 3.9E-08 1.3E-12 84.6 3.3 48 235-293 23-74 (90)
110 2g6q_A Inhibitor of growth pro 98.5 2.5E-08 8.7E-13 80.0 1.1 49 236-295 9-60 (62)
111 3c6w_A P28ING5, inhibitor of g 98.5 2.9E-08 9.9E-13 78.9 1.2 49 236-295 7-58 (59)
112 3ql9_A Transcriptional regulat 98.3 7.2E-08 2.5E-12 88.0 -1.5 54 235-296 54-112 (129)
113 1x4i_A Inhibitor of growth pro 98.2 2.6E-07 8.8E-12 75.9 1.9 50 236-296 4-56 (70)
114 1we9_A PHD finger family prote 98.2 2.9E-07 9.9E-12 73.5 2.1 55 236-296 4-59 (64)
115 2rsd_A E3 SUMO-protein ligase 98.1 1.2E-06 4.1E-11 71.2 3.5 55 235-295 7-65 (68)
116 3o70_A PHD finger protein 13; 98.1 1.1E-06 3.7E-11 71.7 2.9 51 235-294 16-66 (68)
117 1wee_A PHD finger family prote 98.1 1.2E-06 4.1E-11 71.8 2.8 52 236-295 14-66 (72)
118 1wew_A DNA-binding family prot 98.0 1.7E-06 5.8E-11 72.1 2.3 57 235-295 13-72 (78)
119 2nzz_A Penetratin conjugated G 98.0 6.4E-07 2.2E-11 65.0 -0.4 20 483-503 1-20 (37)
120 2ri7_A Nucleosome-remodeling f 97.9 6.8E-07 2.3E-11 84.2 -1.7 55 236-296 6-60 (174)
121 1wem_A Death associated transc 97.9 8.7E-07 3E-11 73.2 -0.9 54 236-295 14-70 (76)
122 2kwj_A Zinc finger protein DPF 97.8 2.3E-06 7.8E-11 76.1 0.2 54 239-295 2-61 (114)
123 1wep_A PHF8; structural genomi 97.7 6.3E-06 2.2E-10 68.6 0.9 52 237-295 11-63 (79)
124 2xb1_A Pygopus homolog 2, B-ce 97.7 5.9E-06 2E-10 72.7 0.7 55 238-296 3-62 (105)
125 2vpb_A Hpygo1, pygopus homolog 97.7 2.4E-06 8E-11 69.2 -2.1 54 236-293 6-64 (65)
126 3kqi_A GRC5, PHD finger protei 97.7 6.9E-06 2.4E-10 67.8 0.2 53 237-295 9-61 (75)
127 3v43_A Histone acetyltransfera 97.6 4.7E-06 1.6E-10 73.8 -1.6 55 238-296 5-65 (112)
128 2kgg_A Histone demethylase jar 97.6 8.8E-06 3E-10 62.7 -0.2 48 240-293 4-52 (52)
129 1wil_A KIAA1045 protein; ring 97.6 3.2E-05 1.1E-09 65.5 2.8 54 236-293 13-74 (89)
130 3o7a_A PHD finger protein 13 v 97.5 2.2E-05 7.7E-10 60.4 1.7 46 239-293 5-50 (52)
131 3lqh_A Histone-lysine N-methyl 97.3 0.0001 3.6E-09 70.8 2.8 56 239-296 3-64 (183)
132 3pur_A Lysine-specific demethy 97.0 0.0002 6.7E-09 78.6 1.9 40 252-295 55-94 (528)
133 3kv5_D JMJC domain-containing 96.9 8.5E-05 2.9E-09 81.1 -1.6 55 236-296 35-89 (488)
134 3kv4_A PHD finger protein 8; e 96.2 0.00036 1.2E-08 75.4 -2.9 51 240-295 6-56 (447)
135 4bbq_A Lysine-specific demethy 95.6 0.0035 1.2E-07 55.1 1.4 40 253-295 73-114 (117)
136 2ku7_A MLL1 PHD3-CYP33 RRM chi 94.5 0.009 3.1E-07 52.5 0.8 40 254-295 1-44 (140)
137 2ys9_A Homeobox and leucine zi 94.4 0.033 1.1E-06 45.7 4.0 49 446-494 11-59 (70)
138 4gne_A Histone-lysine N-methyl 93.9 0.032 1.1E-06 49.2 3.1 64 214-289 35-98 (107)
139 3a1b_A DNA (cytosine-5)-methyl 86.7 0.13 4.3E-06 48.4 -0.0 55 237-296 78-135 (159)
140 2pv0_B DNA (cytosine-5)-methyl 83.6 0.15 5.1E-06 54.1 -1.3 54 237-296 92-149 (386)
141 3rsn_A SET1/ASH2 histone methy 80.5 1 3.5E-05 43.0 3.4 50 243-295 9-59 (177)
142 2d8s_A Cellular modulator of i 79.9 0.76 2.6E-05 38.0 2.0 52 236-296 13-68 (80)
143 2glo_A Brinker CG9653-PA; prot 78.1 1.8 6.3E-05 32.9 3.6 47 446-493 4-50 (59)
144 1iym_A EL5; ring-H2 finger, ub 77.7 1.1 3.9E-05 32.9 2.2 49 237-295 4-52 (55)
145 1hlv_A CENP-B, major centromer 77.7 3.3 0.00011 35.8 5.6 48 444-494 4-51 (131)
146 1tc3_C Protein (TC3 transposas 76.8 3.8 0.00013 28.4 4.8 42 447-493 5-46 (51)
147 3k1l_B Fancl; UBC, ring, RWD, 76.1 2.8 9.4E-05 44.2 5.3 59 235-296 305-371 (381)
148 2ct0_A Non-SMC element 1 homol 73.6 1.2 4.1E-05 36.5 1.5 48 236-294 13-60 (74)
149 2kn9_A Rubredoxin; metalloprot 73.5 3.2 0.00011 34.8 4.1 66 219-299 8-73 (81)
150 2l0b_A E3 ubiquitin-protein li 72.2 0.62 2.1E-05 38.7 -0.6 49 236-295 38-86 (91)
151 2elh_A CG11849-PA, LD40883P; s 72.1 5.1 0.00018 32.8 5.1 45 442-491 17-61 (87)
152 4bbq_A Lysine-specific demethy 71.2 1 3.5E-05 39.2 0.6 38 238-296 7-44 (117)
153 1jko_C HIN recombinase, DNA-in 69.9 3.6 0.00012 29.1 3.2 43 447-494 5-47 (52)
154 3hug_A RNA polymerase sigma fa 67.2 5.6 0.00019 32.6 4.3 48 447-500 37-84 (92)
155 2kiz_A E3 ubiquitin-protein li 67.0 1 3.4E-05 35.0 -0.3 51 235-296 11-61 (69)
156 2ect_A Ring finger protein 126 64.2 3.2 0.00011 32.9 2.1 50 236-296 13-62 (78)
157 2o8x_A Probable RNA polymerase 61.9 5.3 0.00018 30.4 3.0 47 447-499 15-61 (70)
158 1x4j_A Ring finger protein 38; 59.5 0.81 2.8E-05 36.3 -2.2 49 236-295 21-69 (75)
159 4a0k_B E3 ubiquitin-protein li 58.9 2.2 7.7E-05 37.8 0.3 27 261-295 83-109 (117)
160 2ecl_A Ring-box protein 2; RNF 58.8 2.8 9.7E-05 34.0 0.9 50 237-295 14-73 (81)
161 3c57_A Two component transcrip 58.4 7.6 0.00026 32.3 3.5 43 446-494 26-68 (95)
162 2ecm_A Ring finger and CHY zin 58.2 1.7 5.7E-05 32.0 -0.5 49 237-295 4-52 (55)
163 1p4w_A RCSB; solution structur 57.8 12 0.00042 31.7 4.8 44 445-494 32-75 (99)
164 2jn6_A Protein CGL2762, transp 57.2 12 0.00041 30.7 4.6 46 446-494 4-49 (97)
165 1vyx_A ORF K3, K3RING; zinc-bi 56.3 1.1 3.7E-05 35.1 -1.9 49 237-295 5-56 (60)
166 3dpl_R Ring-box protein 1; ubi 55.7 2.8 9.4E-05 36.4 0.3 27 261-295 72-98 (106)
167 3l11_A E3 ubiquitin-protein li 55.3 3.6 0.00012 35.1 1.1 50 236-298 13-62 (115)
168 2rn7_A IS629 ORFA; helix, all 54.9 15 0.00053 30.6 4.9 46 446-491 5-53 (108)
169 1v87_A Deltex protein 2; ring- 53.4 3 0.0001 35.4 0.2 32 261-295 60-91 (114)
170 2x48_A CAG38821; archeal virus 52.1 14 0.00048 27.0 3.8 40 447-491 13-54 (55)
171 2d8t_A Dactylidin, ring finger 51.0 7.1 0.00024 30.4 2.0 48 236-297 13-60 (71)
172 1e4u_A Transcriptional repress 50.8 8.3 0.00028 31.4 2.5 51 237-296 10-60 (78)
173 3nw0_A Non-structural maintena 49.1 5.1 0.00018 39.5 1.1 46 238-294 180-225 (238)
174 1fse_A GERE; helix-turn-helix 49.0 16 0.00054 28.0 3.8 43 446-494 10-52 (74)
175 2ep4_A Ring finger protein 24; 49.0 2.6 9E-05 33.0 -0.8 50 236-296 13-62 (74)
176 1ku3_A Sigma factor SIGA; heli 48.9 14 0.00049 28.7 3.5 50 447-498 10-59 (73)
177 3mzy_A RNA polymerase sigma-H 48.8 15 0.00051 31.7 4.0 47 447-500 109-155 (164)
178 1x3u_A Transcriptional regulat 47.7 8.1 0.00028 30.2 1.9 42 447-494 16-57 (79)
179 1s7o_A Hypothetical UPF0122 pr 44.4 16 0.00056 31.6 3.5 48 447-500 22-69 (113)
180 2ysl_A Tripartite motif-contai 44.0 5.8 0.0002 30.7 0.5 50 236-296 18-67 (73)
181 2xi8_A Putative transcription 43.9 12 0.00043 27.5 2.4 24 471-494 17-40 (66)
182 2egp_A Tripartite motif-contai 43.9 14 0.00048 28.8 2.8 53 237-296 11-63 (79)
183 2p7v_B Sigma-70, RNA polymeras 43.5 14 0.00049 28.3 2.7 47 447-494 5-51 (68)
184 2r1j_L Repressor protein C2; p 43.1 13 0.00046 27.5 2.4 24 471-494 21-44 (68)
185 2rnj_A Response regulator prot 42.5 18 0.00063 29.4 3.4 43 446-494 28-70 (91)
186 2ckl_B Ubiquitin ligase protei 41.8 4.8 0.00016 36.7 -0.4 49 236-296 52-100 (165)
187 1je8_A Nitrate/nitrite respons 41.6 12 0.0004 30.3 2.0 44 445-494 19-62 (82)
188 1weq_A PHD finger protein 7; s 41.5 15 0.00051 31.0 2.6 33 253-293 44-77 (85)
189 1zug_A Phage 434 CRO protein; 41.3 14 0.00049 27.6 2.4 24 471-494 19-42 (71)
190 3bs3_A Putative DNA-binding pr 39.8 16 0.00054 27.9 2.4 24 471-494 26-49 (76)
191 2lq6_A Bromodomain-containing 39.7 9 0.00031 32.2 1.0 31 239-272 18-49 (87)
192 1rp3_A RNA polymerase sigma fa 39.7 17 0.00058 33.6 3.1 47 447-499 187-233 (239)
193 2pmy_A RAS and EF-hand domain- 39.5 20 0.00068 28.6 3.1 46 446-491 19-69 (91)
194 3i5g_B Myosin regulatory light 39.4 53 0.0018 28.9 6.2 45 445-489 7-58 (153)
195 2rgt_A Fusion of LIM/homeobox 38.9 0.62 2.1E-05 43.0 -6.9 29 440-468 135-163 (169)
196 3bd1_A CRO protein; transcript 38.0 16 0.00055 28.6 2.2 25 470-494 13-37 (79)
197 1adr_A P22 C2 repressor; trans 37.3 18 0.00062 27.4 2.4 24 471-494 21-44 (76)
198 1xsv_A Hypothetical UPF0122 pr 37.3 29 0.00099 29.9 3.9 48 447-500 25-72 (113)
199 1u78_A TC3 transposase, transp 36.6 42 0.0015 28.5 5.0 43 446-493 5-47 (141)
200 4ayc_A E3 ubiquitin-protein li 36.6 6.5 0.00022 34.9 -0.3 44 239-296 54-97 (138)
201 1fi6_A EH domain protein REPS1 36.6 32 0.0011 27.7 4.0 44 447-490 2-50 (92)
202 1r69_A Repressor protein CI; g 36.5 19 0.00065 26.8 2.4 24 471-494 17-40 (69)
203 3omt_A Uncharacterized protein 36.5 20 0.00069 27.4 2.6 24 471-494 24-47 (73)
204 2b5a_A C.BCLI; helix-turn-heli 36.3 19 0.00066 27.4 2.4 24 471-494 26-49 (77)
205 2jpc_A SSRB; DNA binding prote 35.8 30 0.001 25.5 3.4 38 451-494 2-39 (61)
206 2ct2_A Tripartite motif protei 35.6 8.9 0.0003 30.6 0.3 54 236-296 13-66 (88)
207 1jm7_B BARD1, BRCA1-associated 35.0 24 0.00081 30.2 3.0 45 237-296 21-65 (117)
208 1or7_A Sigma-24, RNA polymeras 34.7 25 0.00087 31.5 3.3 47 447-499 140-186 (194)
209 1y7y_A C.AHDI; helix-turn-heli 34.6 22 0.00075 26.8 2.5 24 471-494 29-52 (74)
210 2ea6_A Ring finger protein 4; 34.2 6.1 0.00021 30.0 -0.8 51 236-295 13-65 (69)
211 1s24_A Rubredoxin 2; electron 34.2 14 0.00047 31.4 1.3 47 237-298 34-80 (87)
212 1dx8_A Rubredoxin; electron tr 33.9 18 0.0006 29.4 1.8 16 279-297 36-51 (70)
213 2ecj_A Tripartite motif-contai 33.8 21 0.00071 26.0 2.1 45 237-292 14-58 (58)
214 2ecw_A Tripartite motif-contai 33.7 7.3 0.00025 30.7 -0.5 52 237-296 18-69 (85)
215 3b7h_A Prophage LP1 protein 11 33.6 23 0.00077 27.1 2.4 23 471-493 23-45 (78)
216 2ecv_A Tripartite motif-contai 33.3 4.7 0.00016 31.8 -1.7 52 237-296 18-69 (85)
217 2lv7_A Calcium-binding protein 33.0 64 0.0022 26.7 5.3 46 445-490 27-79 (100)
218 3lrq_A E3 ubiquitin-protein li 32.4 4.6 0.00016 33.9 -2.0 48 237-296 21-68 (100)
219 1chc_A Equine herpes virus-1 r 32.2 6.5 0.00022 30.1 -1.0 47 237-296 4-50 (68)
220 3fmy_A HTH-type transcriptiona 32.2 43 0.0015 26.0 3.9 41 447-494 10-50 (73)
221 1iuf_A Centromere ABP1 protein 32.2 28 0.00096 31.1 3.1 49 442-493 6-61 (144)
222 2csy_A Zinc finger protein 183 32.1 8 0.00027 30.8 -0.5 47 236-296 13-59 (81)
223 3kz3_A Repressor protein CI; f 31.7 25 0.00087 27.4 2.5 24 471-494 28-51 (80)
224 3ulq_B Transcriptional regulat 31.7 46 0.0016 27.4 4.2 45 444-494 26-70 (90)
225 1c07_A Protein (epidermal grow 31.7 38 0.0013 27.5 3.6 43 448-490 4-51 (95)
226 1tty_A Sigma-A, RNA polymerase 31.6 20 0.00069 29.0 1.9 47 447-494 18-64 (87)
227 1j7q_A CAVP, calcium vector pr 31.0 83 0.0028 24.1 5.4 45 446-490 6-60 (86)
228 2kpj_A SOS-response transcript 31.0 26 0.00089 28.3 2.5 24 471-494 25-48 (94)
229 1jm7_A BRCA1, breast cancer ty 30.9 8.8 0.0003 32.2 -0.4 48 238-296 21-68 (112)
230 2ysj_A Tripartite motif-contai 30.2 7.3 0.00025 29.4 -1.0 46 236-292 18-63 (63)
231 2ecn_A Ring finger protein 141 29.4 14 0.00049 28.3 0.6 45 237-296 14-58 (70)
232 2yur_A Retinoblastoma-binding 29.4 16 0.00056 28.6 0.9 49 236-295 13-61 (74)
233 1e8j_A Rubredoxin; iron-sulfur 29.2 34 0.0012 26.1 2.6 15 279-296 32-46 (52)
234 2a6c_A Helix-turn-helix motif; 28.6 30 0.001 27.4 2.4 23 471-493 34-56 (83)
235 1u78_A TC3 transposase, transp 28.5 78 0.0027 26.8 5.3 45 446-494 59-105 (141)
236 2wiu_B HTH-type transcriptiona 28.2 32 0.0011 26.9 2.5 24 471-494 28-51 (88)
237 2ef8_A C.ECOT38IS, putative tr 28.2 31 0.0011 26.7 2.4 24 471-494 26-49 (84)
238 2k9q_A Uncharacterized protein 27.6 33 0.0011 26.5 2.4 24 471-494 18-41 (77)
239 2q0o_A Probable transcriptiona 27.3 43 0.0015 31.8 3.7 44 445-494 173-216 (236)
240 3fl2_A E3 ubiquitin-protein li 26.7 7.6 0.00026 33.6 -1.6 47 237-296 51-97 (124)
241 3o9x_A Uncharacterized HTH-typ 26.6 51 0.0018 28.3 3.8 41 447-494 70-110 (133)
242 3f6w_A XRE-family like protein 26.5 34 0.0012 26.6 2.4 24 471-494 30-53 (83)
243 2djb_A Polycomb group ring fin 25.9 18 0.0006 28.1 0.5 48 236-296 13-60 (72)
244 1pdn_C Protein (PRD paired); p 25.7 77 0.0026 26.0 4.6 42 444-490 14-55 (128)
245 3ng2_A RNF4, snurf, ring finge 25.7 4.2 0.00015 31.3 -3.1 52 236-296 8-61 (71)
246 3lsg_A Two-component response 25.6 40 0.0014 27.6 2.8 40 453-492 4-43 (103)
247 2q1z_A RPOE, ECF SIGE; ECF sig 25.5 31 0.001 30.7 2.2 47 447-499 135-181 (184)
248 1k78_A Paired box protein PAX5 25.5 1.2E+02 0.0042 26.2 6.1 47 445-494 88-144 (149)
249 1rzs_A Antirepressor, regulato 25.5 34 0.0011 26.1 2.1 20 470-489 12-31 (61)
250 2v79_A DNA replication protein 25.5 66 0.0023 28.7 4.3 44 446-492 28-75 (135)
251 2ict_A Antitoxin HIGA; helix-t 25.3 35 0.0012 27.4 2.3 24 471-494 24-47 (94)
252 3t72_q RNA polymerase sigma fa 25.2 55 0.0019 27.8 3.6 51 447-499 19-69 (99)
253 2k27_A Paired box protein PAX- 25.2 79 0.0027 27.9 4.8 46 444-494 22-67 (159)
254 3s8q_A R-M controller protein; 24.6 40 0.0014 26.1 2.5 25 470-494 26-50 (82)
255 1lmb_3 Protein (lambda repress 24.6 38 0.0013 26.9 2.4 24 471-494 33-56 (92)
256 2ktg_A Calmodulin, putative; e 24.6 87 0.003 23.8 4.4 45 446-490 6-57 (85)
257 1bor_A Transcription factor PM 24.2 70 0.0024 23.6 3.6 44 236-296 4-47 (56)
258 3t76_A VANU, transcriptional r 24.1 40 0.0014 27.8 2.4 25 470-494 39-63 (88)
259 2ecy_A TNF receptor-associated 24.0 13 0.00045 28.3 -0.6 47 237-296 14-60 (66)
260 2opo_A Polcalcin CHE A 3; calc 24.0 73 0.0025 24.4 3.9 44 447-490 4-53 (86)
261 4b2u_A S67; toxin, ICK; NMR {S 23.8 26 0.00088 24.4 0.9 12 282-295 16-27 (36)
262 2l49_A C protein; P2 bacteriop 23.7 43 0.0015 27.0 2.5 24 471-494 20-43 (99)
263 2joj_A Centrin protein; N-term 23.5 53 0.0018 24.4 2.9 43 448-490 1-50 (77)
264 3qq6_A HTH-type transcriptiona 23.4 44 0.0015 26.2 2.5 24 471-494 26-50 (78)
265 2zet_C Melanophilin; complex, 23.3 30 0.001 31.9 1.7 54 237-298 67-120 (153)
266 4b2v_A S64; toxin, ICK; NMR {S 23.3 31 0.0011 23.4 1.3 19 268-294 8-26 (32)
267 1dtl_A Cardiac troponin C; hel 22.8 1.2E+02 0.004 25.5 5.3 45 446-490 10-62 (161)
268 1x57_A Endothelial differentia 22.6 43 0.0015 26.7 2.3 24 471-494 29-52 (91)
269 2ckl_A Polycomb group ring fin 22.0 16 0.00055 30.7 -0.4 47 237-296 14-60 (108)
270 2xeu_A Ring finger protein 4; 21.9 4.5 0.00016 30.3 -3.6 50 238-296 3-54 (64)
271 1qf8_A Casein kinase II; casei 21.8 35 0.0012 32.6 1.8 51 261-311 108-164 (182)
272 2lfw_A PHYR sigma-like domain; 21.7 50 0.0017 29.2 2.8 49 447-501 93-141 (157)
273 4ap4_A E3 ubiquitin ligase RNF 21.6 6.1 0.00021 33.8 -3.3 52 236-296 70-123 (133)
274 1k78_A Paired box protein PAX5 21.6 75 0.0026 27.6 3.9 43 446-493 31-73 (149)
275 1l0o_C Sigma factor; bergerat 21.5 20 0.00067 33.1 0.0 43 447-494 198-240 (243)
276 3bdn_A Lambda repressor; repre 21.3 55 0.0019 30.7 3.1 25 470-494 32-56 (236)
277 4dgl_A Casein kinase II subuni 21.3 30 0.001 33.9 1.3 51 261-311 108-164 (215)
278 2k1p_A Zinc finger RAN-binding 21.3 33 0.0011 23.7 1.1 10 282-293 4-13 (33)
279 1avs_A Troponin C; muscle cont 21.1 97 0.0033 24.0 4.1 44 447-490 13-63 (90)
280 2kvr_A Ubiquitin carboxyl-term 20.9 34 0.0012 30.6 1.4 24 471-494 72-95 (130)
281 2mys_C Myosin; muscle protein, 20.8 1.3E+02 0.0043 24.8 5.0 44 448-491 2-52 (149)
282 3j04_B Myosin regulatory light 20.6 1.5E+02 0.0051 24.4 5.4 44 448-491 1-51 (143)
283 2ewt_A BLDD, putative DNA-bind 20.5 54 0.0019 24.4 2.4 24 471-494 24-49 (71)
284 2y43_A E3 ubiquitin-protein li 20.1 15 0.00051 30.3 -1.0 47 237-296 21-67 (99)
285 2hin_A GP39, repressor protein 20.0 62 0.0021 26.0 2.7 24 471-494 13-36 (71)
No 1
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=140.51 Aligned_cols=60 Identities=30% Similarity=0.463 Sum_probs=55.2
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
...+|+|+.||.+|+.+||.+|..++||+..+|++||.+|||++.||++||||||++.+|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr 64 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 64 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccc
Confidence 445778899999999999999999999999999999999999999999999999994433
No 2
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.7e-18 Score=141.27 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=54.1
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
...+|+|++||.+|+.+||.+|..++||+..+|.+||.+|||++.||+|||||||++
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 61 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 61 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHH
Confidence 456778899999999999999999999999999999999999999999999999993
No 3
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.8e-18 Score=141.79 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=57.5
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhhhh
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 502 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~~~ 502 (574)
...+|+|+.||.+|+.+||.+|..++||+..+|++||.+|||++.||+|||||||++.+|....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999955554433
No 4
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=140.41 Aligned_cols=58 Identities=31% Similarity=0.386 Sum_probs=54.6
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 496 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~ 496 (574)
.+.+|+|++||.+|+.+||.+|..++||+..++++||.+|||++.||++||||||++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKA 62 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHH
Confidence 4567788999999999999999999999999999999999999999999999999943
No 5
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.5e-18 Score=139.44 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=55.0
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
...+++|++||.+|+.+||.+|..++||+..+|.+||.+|||++.||++||||||++.++
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr 64 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 64 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCC
Confidence 455677899999999999999999999999999999999999999999999999994433
No 6
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=140.43 Aligned_cols=59 Identities=22% Similarity=0.418 Sum_probs=55.0
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHH
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 496 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~ 496 (574)
..+.+|+|++||.+|+.+||.+|..++||+..++.+||.+|||++.||++||||||++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKE 62 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHH
Confidence 34567888999999999999999999999999999999999999999999999999943
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=6.1e-18 Score=141.43 Aligned_cols=61 Identities=23% Similarity=0.440 Sum_probs=55.9
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHh
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 499 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~ 499 (574)
.+.+|+|++||.+|+.+||.+|..++||+..+|++||.+|||++.||+|||||||++.+|.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 4567888999999999999999999999999999999999999999999999999944443
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=5.6e-18 Score=141.81 Aligned_cols=64 Identities=20% Similarity=0.412 Sum_probs=57.5
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhhhh
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 502 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~~~ 502 (574)
...+|+|+.||.+|+.+||.+|..++||+..+|.+||..|||++.||+|||||||++.+|..+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 4557788999999999999999999999999999999999999999999999999955554443
No 9
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=143.39 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=55.1
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHH
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 496 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~ 496 (574)
..+.+|+|+.||.+|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 72 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 72 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHh
Confidence 35567888999999999999999999999999999999999999999999999999933
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=7.8e-18 Score=139.96 Aligned_cols=62 Identities=26% Similarity=0.411 Sum_probs=56.2
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
.+.+|+|+.||..|+.+||.+|..++||+..+|.+||..|||++.||+|||||||++.++..
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 45677889999999999999999999999999999999999999999999999999444433
No 11
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=140.54 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=54.5
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
+...+|+|+.||.+|+.+||.+|..++||+..+|++||.+|||++.||++||||||++
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 61 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 3456788899999999999999999999999999999999999999999999999993
No 12
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=142.90 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=55.1
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHH
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 496 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~ 496 (574)
+.+.+|+|+.||.+|+.+||.+|..++||+..+|++||.+|||++.||+|||||||++.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 72 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARE 72 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhH
Confidence 35667888999999999999999999999999999999999999999999999999933
No 13
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=6.4e-18 Score=132.72 Aligned_cols=55 Identities=25% Similarity=0.382 Sum_probs=52.2
Q ss_pred CCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHH
Q 008193 442 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 496 (574)
Q Consensus 442 kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~ 496 (574)
+|+|+.||.+|+.+||.+|..++||+..++.+||..|||++.||++||||||++.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 55 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 55 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhh
Confidence 4678999999999999999999999999999999999999999999999999943
No 14
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=6.1e-18 Score=133.98 Aligned_cols=57 Identities=23% Similarity=0.400 Sum_probs=52.9
Q ss_pred CCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 442 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 442 kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
+|+|+.||.+|+.+||.+|..++||+..++.+||.+|||++.||++||||||++.+|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 567899999999999999999999999999999999999999999999999995444
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.71 E-value=5.2e-18 Score=134.81 Aligned_cols=55 Identities=27% Similarity=0.485 Sum_probs=50.1
Q ss_pred cCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 441 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 441 ~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
.+|+|+.||.+|+.+||.+|..|+||+..+|.+||..|||++.||++||||||++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAK 57 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccc
Confidence 4677899999999999999999999999999999999999999999999999993
No 16
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.71 E-value=7.5e-18 Score=134.85 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=51.9
Q ss_pred cCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHH
Q 008193 441 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 496 (574)
Q Consensus 441 ~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~ 496 (574)
.+|+|+.||..|+.+||.+|..++||+..+|.+||..|||++.||++||||||++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 58 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKW 58 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhh
Confidence 46778999999999999999999999999999999999999999999999999943
No 17
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=5e-18 Score=142.94 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=55.3
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHH
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 496 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~ 496 (574)
..+.+|+|+.||..|+.+||.+|..++||+..+|.+||..|||++.||+|||||||++.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~ 77 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKS 77 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999943
No 18
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=7e-18 Score=141.89 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=53.8
Q ss_pred cccCCCccCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAE----NELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~----~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.+.+|+|+.||.+|+.+||.+|.. ++||+..+|++||.+|||++.||+|||||||+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRa 74 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKH 74 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCc
Confidence 456788899999999999999999 99999999999999999999999999999999
No 19
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=135.85 Aligned_cols=58 Identities=26% Similarity=0.425 Sum_probs=53.8
Q ss_pred cCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 441 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 441 ~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
++|+|+.||..|+.+||.+|..++||+..+|.+||..|||++.||++||||||++.++
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 59 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR 59 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhh
Confidence 4678899999999999999999999999999999999999999999999999994433
No 20
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.71 E-value=6.5e-18 Score=137.39 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=54.7
Q ss_pred cCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 441 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 441 ~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
++|.|+.||.+|+.+||.+|..++||+..+|.+||..|||++.||+|||||||++.+|..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 367789999999999999999999999999999999999999999999999999444433
No 21
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=140.16 Aligned_cols=65 Identities=25% Similarity=0.342 Sum_probs=57.5
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhhhh
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 502 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~~~ 502 (574)
+.+.+++|++||.+|+.+||.+|.+ |+||+..+|++||.+|||++.||+|||||+|++.++....
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 3556778899999999999999998 5999999999999999999999999999999966554433
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.70 E-value=1.2e-17 Score=140.06 Aligned_cols=62 Identities=24% Similarity=0.466 Sum_probs=55.6
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHh
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 499 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~ 499 (574)
..+.+|+|+.||..|+.+||.+|..++||+..+|.+||.+|||++.||++||||||++.+|.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 35567888999999999999999999999999999999999999999999999999954443
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=1.4e-17 Score=135.25 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=54.9
Q ss_pred cCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 441 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 441 ~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
.+|+|+.||.+|+.+||.+|..++||+..+|.+||..|||++.||+|||||||++.++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 367789999999999999999999999999999999999999999999999999544443
No 24
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.70 E-value=7.5e-18 Score=134.30 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=49.2
Q ss_pred cCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 441 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 441 ~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
.+|+|+.||.+|+.+||.+|..++||+..+|.+||..|||++.||++||||||++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 57 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMK 57 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcc
Confidence 4678899999999999999999999999999999999999999999999999993
No 25
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=8e-18 Score=135.71 Aligned_cols=55 Identities=27% Similarity=0.486 Sum_probs=52.8
Q ss_pred cCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 441 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 441 ~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
.+|+|+.||.+|+.+||.+|..++||+..++++||..|||++.||++||||||++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCK 57 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999993
No 26
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.70 E-value=2.2e-17 Score=137.23 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=56.2
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
...+|+|+.||..|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|..
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 44567889999999999999999999999999999999999999999999999999554443
No 27
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.1e-17 Score=135.77 Aligned_cols=61 Identities=23% Similarity=0.366 Sum_probs=55.4
Q ss_pred cccCCCccCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHh
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 499 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~ 499 (574)
.+.+++|+.||.+|+.+||.+|.. ++||+..+|++||.+|||++.||++||||||++.++.
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 455677899999999999999987 9999999999999999999999999999999955443
No 28
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=2e-17 Score=142.63 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=57.7
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhhh
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 501 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~~ 501 (574)
+++.+|+|+.||.+|+.+||.+|..++||+..+|.+||..|||++.||+|||||||++.++...
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 4567788999999999999999999999999999999999999999999999999995444433
No 29
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.69 E-value=1.2e-17 Score=132.51 Aligned_cols=55 Identities=27% Similarity=0.433 Sum_probs=46.8
Q ss_pred ccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 440 KIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 440 ~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
+.+|+|++||.+|+.+||.+|..++||+..++.+||.+|||++.||++||||||+
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~ 58 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRM 58 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999999999999999999999
No 30
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=1.2e-17 Score=140.73 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=53.0
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+.+|.|+.||.+|+.+|| .|.. ++||+..+|++||.+|||++.||+|||||||+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~ 74 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKN 74 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccccccccccc
Confidence 35667888999999999999 8999 99999999999999999999999999999999
No 31
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.69 E-value=9.4e-18 Score=136.21 Aligned_cols=58 Identities=26% Similarity=0.408 Sum_probs=54.0
Q ss_pred cCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 441 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 441 ~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
.+|+|+.||..|+.+||.+|..++||+..++.+||..|||++.||++||||||++.+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 60 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 60 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHH
Confidence 4678899999999999999999999999999999999999999999999999994433
No 32
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=135.73 Aligned_cols=56 Identities=21% Similarity=0.430 Sum_probs=51.4
Q ss_pred CCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 443 RSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 443 r~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
++|++||.+|+.+||.+|..++||+..+|.+||.+|||++.||+|||||||++.++
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNA 64 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999994433
No 33
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.69 E-value=3.2e-17 Score=135.06 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=53.5
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.+.+|+|++||..|+.+||.+|..++||+..+|.+||..|||++.||++||||||+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 60 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRV 60 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhH
Confidence 44577889999999999999999999999999999999999999999999999999
No 34
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=2.6e-17 Score=134.35 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=54.1
Q ss_pred cccCCCccCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAE-NELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~-~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
...+|+|+.|+.+|+.+|+.+|+. ++||+...|++||.+|||++++|+|||||+|+
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 466889999999999999999999 99999999999999999999999999999999
No 35
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.68 E-value=1.9e-17 Score=131.20 Aligned_cols=55 Identities=24% Similarity=0.460 Sum_probs=49.1
Q ss_pred CccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 444 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 444 ~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
+|++||.+|+.+||.+|..++||+..+|.+||.+|||++.||++||||||++.+|
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 3589999999999999999999999999999999999999999999999994433
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=3.7e-17 Score=134.37 Aligned_cols=56 Identities=29% Similarity=0.514 Sum_probs=53.7
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.+.+|.|+.||..|+.+||.+|..++||+..++.+||..|||++.||++||||||+
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 62 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRA 62 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999
No 37
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=128.97 Aligned_cols=54 Identities=26% Similarity=0.427 Sum_probs=52.1
Q ss_pred cCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 441 IRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 441 ~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
++|+|+.|+..|+.+||.+|..++||+..++.+||..|||++.||++||||||+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 55 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRY 55 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhc
Confidence 457789999999999999999999999999999999999999999999999999
No 38
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.68 E-value=2.4e-17 Score=138.50 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=51.3
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
...+|.|+.||.+|+.+||.+|..++||+..+|++||..|||++.||+|||||||++.+|
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 77 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKK 77 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhh
Confidence 345778899999999999999999999999999999999999999999999999994433
No 39
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=138.62 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=54.4
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCChhhHHHhhcccccHH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAEN----ELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 496 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~----~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~ 496 (574)
.+.+|.|+.||.+|+.+||.+|..+ +||+..+|++||.+|||++.||+|||||||++.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~ 67 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKY 67 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHH
Confidence 4567788999999999999999999 999999999999999999999999999999933
No 40
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-17 Score=132.23 Aligned_cols=53 Identities=34% Similarity=0.577 Sum_probs=51.7
Q ss_pred CCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 442 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 442 kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
+|+|+.||++|+.+||.+|..++||+..++.+||.+|||++.||++||||||+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 54 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRA 54 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHH
Confidence 57789999999999999999999999999999999999999999999999999
No 41
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=5.7e-17 Score=135.53 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=51.8
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhhhh
Q 008193 445 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKV 502 (574)
Q Consensus 445 r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~~~ 502 (574)
+.+||.+|+.+||.+|..|+||+..+|++||.+|||++.||+|||||||+ ++|+...
T Consensus 7 r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~-k~Kk~~l 63 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRY-ALKHGQL 63 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH-HHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHH-HHHHHHH
Confidence 35799999999999999999999999999999999999999999999999 4454433
No 42
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.67 E-value=3.1e-17 Score=139.60 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=51.8
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLAL 497 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~ 497 (574)
...+|+|+.||..|+.+||.+|..++||+..+|.+||..|||++.||+|||||||++.+
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~k 84 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 84 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhH
Confidence 45577889999999999999999999999999999999999999999999999999443
No 43
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.67 E-value=4.7e-17 Score=133.69 Aligned_cols=59 Identities=32% Similarity=0.447 Sum_probs=54.2
Q ss_pred CCCccCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 442 RRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 442 kr~r~r~t~~Q~~~Le~~F---~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
+|+|++||.+|+.+||.+| ..++||+..+|.+||..|||++.||++||||||++.++..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 5678999999999999999 8999999999999999999999999999999999554443
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=4.1e-17 Score=141.35 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=53.8
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhhhhh
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKVE 503 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~~~e 503 (574)
...+++|+.||.+|+.+||.+|..++||+..+|.+||..|||++.||+|||||||++ .|+...+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k-~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK-QKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHH-HhHHhcc
Confidence 345677899999999999999999999999999999999999999999999999994 4444333
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=8e-17 Score=139.02 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=57.6
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC---------------CChhhHHHhhcccccHHHHhhh
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------LEPEKVNKWFKNARYLALKARK 501 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~Lg---------------L~~~qV~vWFQNrR~~~~k~~~ 501 (574)
..+.+|.|+.|++.|+.+||.+|..++||+..+|++||.+|| |++.||++||||||++.++..+
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 356678889999999999999999999999999999999999 9999999999999995544443
No 46
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.66 E-value=5.6e-17 Score=126.98 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=47.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHH
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 496 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~ 496 (574)
+.||.+|+.+||.+|..++||+..+|.+||..|||++.||++||||||++.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 52 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKW 52 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhh
Confidence 579999999999999999999999999999999999999999999999943
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=9e-17 Score=131.79 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=51.7
Q ss_pred CCccCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 443 RSFHRMPPNAVEKLRQVFAE-NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 443 r~r~r~t~~Q~~~Le~~F~~-~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
+.|++||.+|+.+||.+|.. ++||+..+|++||.+|||++.||++||||||++.+|
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk 59 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhh
Confidence 45689999999999999996 999999999999999999999999999999994433
No 48
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=1.1e-16 Score=131.76 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=52.2
Q ss_pred CCCccCCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 442 RRSFHRMPPNAVEKLRQVFA-ENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 442 kr~r~r~t~~Q~~~Le~~F~-~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
.++|++||.+|+.+||.+|. .++||+..+|.+||.+|||++.||++||||||++.+|
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk 60 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 60 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999 5999999999999999999999999999999994433
No 49
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=3.8e-17 Score=130.86 Aligned_cols=54 Identities=31% Similarity=0.450 Sum_probs=51.5
Q ss_pred CCCccCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 442 RRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 442 kr~r~r~t~~Q~~~Le~~F---~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
+++|+.||.+|+.+||.+| ..++||+..++++||.+|||++.||++||||+|++
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r 60 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5667899999999999999 89999999999999999999999999999999993
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.5e-17 Score=133.07 Aligned_cols=51 Identities=27% Similarity=0.537 Sum_probs=49.7
Q ss_pred CccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 444 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 444 ~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.|++||.+|+.+||.+|..++||+..+|++||.+|||++.||++||||||+
T Consensus 11 ~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~ 61 (76)
T 2dn0_A 11 YKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRY 61 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhH
Confidence 468999999999999999999999999999999999999999999999999
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=6.8e-17 Score=136.86 Aligned_cols=60 Identities=32% Similarity=0.434 Sum_probs=54.4
Q ss_pred CCCccCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhhh
Q 008193 442 RRSFHRMPPNAVEKLRQVF---AENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 501 (574)
Q Consensus 442 kr~r~r~t~~Q~~~Le~~F---~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~~ 501 (574)
||+|++|+.+|+.+||.+| ..++||+..+|++||.+|||++.||++||||||++.++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 5678999999999999999 89999999999999999999999999999999996555443
No 52
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.65 E-value=9.9e-17 Score=126.85 Aligned_cols=51 Identities=31% Similarity=0.364 Sum_probs=49.3
Q ss_pred ccCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 445 FHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 445 r~r~t~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
+++||.+|+.+||.+|.. ++||+..+|.+||.+|||++.||++||||||++
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r 55 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcc
Confidence 478999999999999999 999999999999999999999999999999993
No 53
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2.2e-16 Score=135.63 Aligned_cols=49 Identities=12% Similarity=0.303 Sum_probs=48.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.+||.+|+.+||.+|..|+||+..+|++||..|||+++||+|||||||+
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~ 64 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKK 64 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccch
Confidence 4899999999999999999999999999999999999999999999999
No 54
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=130.96 Aligned_cols=53 Identities=21% Similarity=0.377 Sum_probs=51.3
Q ss_pred CCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 442 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 442 kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
++.|+.||.+|+.+||.+|..++||+..+|++||..|||++.||++||||||+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 59 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRY 59 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhH
Confidence 56679999999999999999999999999999999999999999999999999
No 55
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=9.5e-17 Score=135.43 Aligned_cols=54 Identities=28% Similarity=0.301 Sum_probs=50.2
Q ss_pred CCccCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCChhhHHHhhcccccHH
Q 008193 443 RSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLA 496 (574)
Q Consensus 443 r~r~r~t~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~ 496 (574)
+++++||.+|+.+||.+|.. ++||+..+|.+||..|||++.||++||||||++.
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~ 60 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKE 60 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccc
Confidence 44577999999999999999 9999999999999999999999999999999944
No 56
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.62 E-value=2.2e-16 Score=136.58 Aligned_cols=60 Identities=25% Similarity=0.466 Sum_probs=52.7
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHh
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 499 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~ 499 (574)
...+|.|++||..|+.+||.+|..++||+..+|.+||..|||++.||++||||||+ ++|+
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~-k~kk 82 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRY-AWKN 82 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTT
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhh-Hhhh
Confidence 34556789999999999999999999999999999999999999999999999999 4443
No 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.62 E-value=3.6e-16 Score=132.75 Aligned_cols=56 Identities=29% Similarity=0.322 Sum_probs=52.6
Q ss_pred cccCCCccCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
...+++|++||.+|+.+||.+|.. ++||+..+|++||.+|||++.||++||||||+
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~ 83 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRR 83 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 344566899999999999999999 99999999999999999999999999999999
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.2e-16 Score=131.92 Aligned_cols=52 Identities=23% Similarity=0.485 Sum_probs=49.2
Q ss_pred CccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 444 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 444 ~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
++.+||.+|+.+||.+|..++||+..+|++||.+|||++.||+|||||||++
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k 67 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKL 67 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHH
Confidence 3456999999999999999999999999999999999999999999999993
No 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=1.5e-16 Score=131.18 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=49.6
Q ss_pred CCccCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 443 RSFHRMPPNAVEKLRQVF-AENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 443 r~r~r~t~~Q~~~Le~~F-~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
+.+.+++.+|+.+||.+| ..++||+..+|++||.+|||+++||+|||||||+
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~ 62 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRN 62 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhccc
Confidence 445689999999999999 9999999999999999999999999999999999
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=126.14 Aligned_cols=52 Identities=19% Similarity=0.426 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 448 MPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 448 ~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
-|.+|+.+||..|..++||+..+|++||..|||+++||++||||||+ ++|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~-k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRY-RCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchh-hhhcc
Confidence 57899999999999999999999999999999999999999999999 55543
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.58 E-value=7.5e-16 Score=143.00 Aligned_cols=57 Identities=30% Similarity=0.412 Sum_probs=51.7
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
.+.+|+|+.||..|+.+||.+|..++||+..+|.+||..|||+++||+|||||||++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 141 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQR 141 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhh
Confidence 456778899999999999999999999999999999999999999999999999993
No 62
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=132.36 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=56.1
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc---------------------CCChhhHHHhhcccccHHH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKEL---------------------SLEPEKVNKWFKNARYLAL 497 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~L---------------------gL~~~qV~vWFQNrR~~~~ 497 (574)
.+.||.|+.|++.|+.+||.+|..++||+..+|++||.+| +|++.+|+|||||||++..
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4567888999999999999999999999999999999999 7999999999999999544
Q ss_pred Hhh
Q 008193 498 KAR 500 (574)
Q Consensus 498 k~~ 500 (574)
++.
T Consensus 84 r~~ 86 (102)
T 2da6_A 84 FRQ 86 (102)
T ss_dssp HHH
T ss_pred Hhh
Confidence 433
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.58 E-value=7.1e-16 Score=145.85 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=48.6
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
.+.+|+|++|+..|+.+||.+|..++||+..+|.+||..|||+++||+|||||||++.+|
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTB
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhh
Confidence 456778899999999999999999999999999999999999999999999999994433
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=141.58 Aligned_cols=57 Identities=33% Similarity=0.547 Sum_probs=54.2
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
.+.+|+|+.|+..|+.+||.+|..++||+..+|.+||.+|||++.||+|||||||++
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k 147 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQT 147 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhc
Confidence 466778899999999999999999999999999999999999999999999999993
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.57 E-value=1.1e-15 Score=143.83 Aligned_cols=57 Identities=25% Similarity=0.403 Sum_probs=51.0
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
.+.||+|+.||..|+.+||.+|..++||+..+|.+||.+|||++.||+|||||||++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 155 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQK 155 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhh
Confidence 466788899999999999999999999999999999999999999999999999993
No 66
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=1.4e-15 Score=123.56 Aligned_cols=54 Identities=28% Similarity=0.401 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 447 RMPPNAVEKLRQVFA---ENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~---~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
+||.+|+.+|+.+|. .||||+..+|.+||.+|||++.||++||||+|++.+|..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 699999999999999 999999999999999999999999999999999555443
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=122.91 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=47.4
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..++.+|+.+||.+|..++||+..+|.+||.+|||+++||+|||||||+
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRa 56 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQA 56 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccC
Confidence 4578999999999999999999999999999999999999999999999
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-15 Score=123.40 Aligned_cols=49 Identities=31% Similarity=0.532 Sum_probs=47.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+|..|+.+||.+|..++||+..+|.+||..|||+++||+|||||||+
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRa 57 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRY 57 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhh
Confidence 4689999999999999999999999999999999999999999999999
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.55 E-value=1.5e-15 Score=132.80 Aligned_cols=56 Identities=30% Similarity=0.466 Sum_probs=49.5
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH------------------cC---CChhhHHHhhccccc
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKE------------------LS---LEPEKVNKWFKNARY 494 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~------------------Lg---L~~~qV~vWFQNrR~ 494 (574)
.+.+|.|+.|++.|+.+||.+|..++||+..+|++||.+ || |++.||+|||||||+
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 456788899999999999999999999999999999999 99 999999999999999
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.55 E-value=1.6e-15 Score=142.69 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=50.9
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
.+.||+|+.||..|+.+||.+|..++||+..+|++||.+|||++.||+|||||||++
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r 151 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRR 151 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcc
Confidence 455778899999999999999999999999999999999999999999999999993
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=1.8e-15 Score=122.51 Aligned_cols=47 Identities=28% Similarity=0.468 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHH-HhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 448 MPPNAVEKLRQVF-AENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 448 ~t~~Q~~~Le~~F-~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
-.+.|+.+||.+| ..+.||+..+|.+||++|||+++||+|||||||+
T Consensus 7 ~~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~ 54 (64)
T 1x2m_A 7 GTAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRN 54 (64)
T ss_dssp CSSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3456899999999 6799999999999999999999999999999999
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.50 E-value=6.7e-15 Score=137.79 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=53.9
Q ss_pred cccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccH
Q 008193 439 AKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYL 495 (574)
Q Consensus 439 ~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~ 495 (574)
.+.+|+|+.|+..|+.+||.+|..++||+..+|.+||..|||+++||+|||||||++
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k 150 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQK 150 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccccccc
Confidence 356678899999999999999999999999999999999999999999999999993
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.46 E-value=7.8e-14 Score=119.78 Aligned_cols=59 Identities=34% Similarity=0.436 Sum_probs=53.3
Q ss_pred cCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhhhhhc
Q 008193 446 HRMPPNAVEKLRQVFAE---NELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARKVES 504 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~---~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~~~e~ 504 (574)
+-|+.+++.+|+.||.+ +|||+..+|++||.+|||++.||++||||+|++.++......
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 57999999999999998 999999999999999999999999999999997766654443
No 74
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.38 E-value=7.2e-14 Score=119.57 Aligned_cols=62 Identities=24% Similarity=0.637 Sum_probs=51.2
Q ss_pred cccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCC--CCCCCCCccccCcccchhhh
Q 008193 234 VHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTE--SIPPGDQGWFCKFCECKMEI 298 (574)
Q Consensus 234 ~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~--~iP~gde~W~C~~C~~k~~~ 298 (574)
..+++.+|.+|+.++...++.||+||+ |+++||++||+|||..+ .+|.++ |||+.|......
T Consensus 12 ~~e~~~~C~vC~~~~~~~~~~ll~CD~-C~~~yH~~Cl~Ppl~~~~~~~p~g~--W~C~~C~~~~~~ 75 (88)
T 1wev_A 12 AMEMGLACVVCRQMTVASGNQLVECQE-CHNLYHQDCHKPQVTDKEVNDPRLV--WYCARCTRQMKR 75 (88)
T ss_dssp HHHHCCSCSSSCCCCCCTTCCEEECSS-SCCEEETTTSSSCCCHHHHHCTTCC--CCCHHHHHHHCC
T ss_pred cCCCCCcCCCCCCCCCCCCCceEECCC-CCCeEcCccCCCcccccccCCCCCC--eeCccccchhhh
Confidence 345678999999987655689999996 99999999999999721 289998 999999876543
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.38 E-value=7.2e-14 Score=135.60 Aligned_cols=58 Identities=28% Similarity=0.427 Sum_probs=51.3
Q ss_pred CccccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC---------------------CChhhHHHhhccccc
Q 008193 437 SNAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------------LEPEKVNKWFKNARY 494 (574)
Q Consensus 437 ~~~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~Lg---------------------L~~~qV~vWFQNrR~ 494 (574)
...+.||.|+.|++.|+.+||.+|..++||+..+|++||..|| |++.||++||||||+
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 3456678899999999999999999999999999999999999 999999999999999
No 76
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.37 E-value=2.9e-13 Score=116.05 Aligned_cols=57 Identities=30% Similarity=0.825 Sum_probs=50.0
Q ss_pred CCCCcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 230 TDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 230 ~dg~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+.+...++++|.+|+.+ ++||+||+ |+++||++|+.|||. .+|.|+ |||+.|....
T Consensus 17 ~~~~~d~n~~~C~vC~~~-----g~LL~CD~-C~~~fH~~Cl~PpL~--~~P~g~--W~C~~C~~~~ 73 (88)
T 1fp0_A 17 EFGTLDDSATICRVCQKP-----GDLVMCNQ-CEFCFHLDCHLPALQ--DVPGEE--WSCSLCHVLP 73 (88)
T ss_dssp CCCSSSSSSSCCSSSCSS-----SCCEECTT-SSCEECTTSSSTTCC--CCCSSS--CCCCSCCCCC
T ss_pred cccccCCCCCcCcCcCCC-----CCEEECCC-CCCceecccCCCCCC--CCcCCC--cCCccccCCC
Confidence 345667788999999986 78999996 999999999999998 799998 9999998654
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4e-13 Score=110.28 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 450 PNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 450 ~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
++|+.+|+.+|..|++|+.+++.+||..|||+.++|+|||||||+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 689999999999999999999999999999999999999999998
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.33 E-value=6.8e-13 Score=106.12 Aligned_cols=52 Identities=38% Similarity=1.072 Sum_probs=45.7
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+.++.+|.+|+.+ ++||+||+ |+++||++|++|||. .+|.++ |||+.|..+.
T Consensus 6 d~~~~~C~vC~~~-----g~ll~Cd~-C~~~fH~~Cl~ppl~--~~p~g~--W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG-----GELLCCDT-CPSSYHIHCLNPPLP--EIPNGE--WLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC-----SSCBCCSS-SCCCBCSSSSSSCCS--SCCSSC--CCCTTTTTTC
T ss_pred cCCCCcCCCCCCC-----CCEEEcCC-CCHHHcccccCCCcC--cCCCCc--cCChhhcCch
Confidence 3457899999975 79999996 999999999999998 799998 9999998653
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.33 E-value=7e-13 Score=130.69 Aligned_cols=57 Identities=30% Similarity=0.494 Sum_probs=52.3
Q ss_pred ccccCCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC---------------------CChhhHHHhhccccc
Q 008193 438 NAKIRRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELS---------------------LEPEKVNKWFKNARY 494 (574)
Q Consensus 438 ~~~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~Lg---------------------L~~~qV~vWFQNrR~ 494 (574)
..+.||.|+.|++.|+.+||.+|..|+||+..+|++||.+|| |++.||++||||||+
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 356678889999999999999999999999999999999998 899999999999998
No 80
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.30 E-value=2.3e-13 Score=109.79 Aligned_cols=58 Identities=28% Similarity=0.733 Sum_probs=48.3
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCC-CCCCCccccCcccch
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESI-PPGDQGWFCKFCECK 295 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~i-P~gde~W~C~~C~~k 295 (574)
+.++.+|.+|+.++..+++.||+||+ |+++||++||+|||....+ |.++ |||+.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~-C~~~~H~~C~~p~l~~~~~~p~~~--W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDK-CGQGYHQLCHTPHIDSSVIDSDEK--WLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSS-SCCEEETTTSSSCCCHHHHHSSCC--CCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCC-CChHHHhhhCCCcccccccCCCCC--EECCCCcCc
Confidence 34678999999986556799999996 9999999999999873224 7888 999999754
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.29 E-value=7.9e-13 Score=107.21 Aligned_cols=51 Identities=41% Similarity=0.976 Sum_probs=45.3
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
..++++|.+|+.+ ++||+||+ |+++||++||+|||. .+|.++ |||+.|...
T Consensus 5 ~~~~~~C~vC~~~-----g~ll~CD~-C~~~fH~~Cl~ppl~--~~P~g~--W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG-----GELICCDG-CPRAFHLACLSPPLR--EIPSGT--WRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC-----SSCEECSS-CCCEECTTTSSSCCS--SCCSSC--CCCHHHHHT
T ss_pred CCCCCCCccCCCC-----CCEEEcCC-CChhhcccccCCCcC--cCCCCC--eECccccCc
Confidence 3467899999976 78999996 999999999999998 799988 999999754
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=104.57 Aligned_cols=52 Identities=37% Similarity=0.914 Sum_probs=45.8
Q ss_pred CcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccc
Q 008193 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (574)
Q Consensus 233 ~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~ 294 (574)
....++.+|.+|+.+ ++||+||+ |+++||++|++||+. .+|.++ |||+.|..
T Consensus 6 ~~~~~~~~C~vC~~~-----g~ll~CD~-C~~~fH~~Cl~p~l~--~~p~g~--W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG-----GEIILCDT-CPRAYHMVCLDPDME--KAPEGK--WSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSCC-----SSEEECSS-SSCEEEHHHHCTTCC--SCCCSS--CCCTTGGG
T ss_pred ccCCCCCCCccCCCC-----CcEEECCC-CChhhhhhccCCCCC--CCCCCc--eECccccc
Confidence 345667899999985 79999995 999999999999998 799998 99999974
No 83
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.27 E-value=1.2e-12 Score=104.18 Aligned_cols=51 Identities=37% Similarity=1.028 Sum_probs=45.2
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.++++|.+|+.+ ++||+||+ |+++||++|++|||. .+|.++ |||+.|....
T Consensus 3 ~~~~~C~vC~~~-----g~ll~Cd~-C~~~fH~~Cl~ppl~--~~p~g~--W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS-----GQLLMCDT-CSRVYHLDCLDPPLK--TIPKGM--WICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC-----SSCEECSS-SSCEECGGGSSSCCS--SCCCSC--CCCHHHHHHH
T ss_pred CCCCCCcCCCCC-----CcEEEcCC-CCcCEECCcCCCCcC--CCCCCc--eEChhccChh
Confidence 356899999986 79999996 999999999999998 799988 9999997654
No 84
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-12 Score=113.01 Aligned_cols=56 Identities=36% Similarity=0.865 Sum_probs=48.5
Q ss_pred CcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 233 ~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
+...++.+|.+|+..+ +.+.||+||+ |+++||++||+|||. .+|.++ |||+.|...
T Consensus 11 ~~~~~~~~C~vC~~~~--~~~~ll~CD~-C~~~~H~~Cl~Ppl~--~~P~g~--W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGD--EDDKLLFCDG-CDDNYHIFCLLPPLP--EIPRGI--WRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSG--GGGGCEECTT-TCCEECSSSSSSCCS--SCCSSC--CCCHHHHHH
T ss_pred hhccCCCCCccCCCcC--CCCCEEEcCC-CCchhccccCCCCcc--cCCCCC--cCCccCcCc
Confidence 4566778999999874 3468999996 999999999999998 799998 999999764
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=101.92 Aligned_cols=50 Identities=36% Similarity=1.014 Sum_probs=44.3
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccc
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~ 294 (574)
..++++|.+|+.. ++||+||+ |+++||++|++|||. .+|.++ |||+.|..
T Consensus 6 ~~~~~~C~vC~~~-----g~ll~Cd~-C~~~~H~~Cl~ppl~--~~p~g~--W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS-----GQLLMCDT-CSRVYHLDCLDPPLK--TIPKGM--WICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS-----SCCEECSS-SSCEECSSSSSSCCC--SCCCSS--CCCHHHHC
T ss_pred CCCCCCCccCCCC-----CeEEEcCC-CCcceECccCCCCcC--CCCCCc--eEChhhhC
Confidence 3457899999986 79999995 999999999999998 799988 99999963
No 86
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-12 Score=105.06 Aligned_cols=50 Identities=28% Similarity=0.558 Sum_probs=43.8
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccc
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~ 294 (574)
......|.+|+.+ ++||+||+ |+++||++||+|||. .+|.++ |||+.|..
T Consensus 9 ~~~~~~C~vC~~~-----~~ll~Cd~-C~~~~H~~Cl~P~l~--~~P~g~--W~C~~C~~ 58 (66)
T 2lri_C 9 LAPGARCGVCGDG-----TDVLRCTH-CAAAFHWRCHFPAGT--SRPGTG--LRCRSCSG 58 (66)
T ss_dssp CCTTCCCTTTSCC-----TTCEECSS-SCCEECHHHHCTTTC--CCCSSS--CCCTTTTT
T ss_pred CCCCCCcCCCCCC-----CeEEECCC-CCCceecccCCCccC--cCCCCC--EECccccC
Confidence 3445679999865 78999995 999999999999998 799998 99999974
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.25 E-value=1.9e-12 Score=99.51 Aligned_cols=48 Identities=42% Similarity=1.043 Sum_probs=42.7
Q ss_pred cccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccc
Q 008193 240 ICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (574)
Q Consensus 240 ~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~ 294 (574)
+|.+|+..+ +++.||+||+ |+++||++|++|||. .+|.++ |||+.|..
T Consensus 2 ~C~vC~~~~--~~~~ll~Cd~-C~~~~H~~Cl~p~l~--~~P~g~--W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG--EDDKLILCDE-CNKAFHLFCLRPALY--EVPDGE--WQCPACQP 49 (51)
T ss_dssp CCTTTCCSS--CCSCCEECTT-TCCEECHHHHCTTCC--SCCSSC--CSCTTTSC
T ss_pred CCCCCCCCC--CCCCEEECCC-CChhhCcccCCCCcC--CCCCCc--EECcCccc
Confidence 699999874 3578999996 999999999999998 799988 99999974
No 88
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.23 E-value=1.9e-12 Score=106.73 Aligned_cols=55 Identities=38% Similarity=0.839 Sum_probs=47.4
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
..++.+|.+|+.+++.+++.||+||+ |+++||++|++|+ .+|.|+ |||+.|....
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~~H~~Cl~~~----~vP~g~--W~C~~C~~~~ 67 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDM-CNLAVHQECYGVP----YIPEGQ--WLCRHCLQSR 67 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSS-SCCEEEHHHHTCS----SCCSSC--CCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCC-CCCccccccCCCC----cCCCCC--cCCccCcCcC
Confidence 45678999999987666789999996 9999999999998 389998 9999998653
No 89
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=6.1e-12 Score=105.29 Aligned_cols=55 Identities=38% Similarity=0.904 Sum_probs=46.4
Q ss_pred CCcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCC-CCccccCcccc
Q 008193 232 GSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPG-DQGWFCKFCEC 294 (574)
Q Consensus 232 g~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~g-de~W~C~~C~~ 294 (574)
.|...+. +|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.| + |||+.|..
T Consensus 21 ~w~C~~c-~C~vC~~~~--~~~~ll~CD~-C~~~yH~~Cl~Ppl~--~~P~g~~--W~C~~C~~ 76 (77)
T 2e6s_A 21 EKKCHSC-SCRVCGGKH--EPNMQLLCDE-CNVAYHIYCLNPPLD--KVPEEEY--WYCPSCKT 76 (77)
T ss_dssp SSCCSSS-SCSSSCCCC--CSTTEEECSS-SCCEEETTSSSSCCS--SCCCSSC--CCCTTTCC
T ss_pred CeECCCC-CCcCcCCcC--CCCCEEEcCC-CCccccccccCCCcc--CCCCCCC--cCCcCccC
Confidence 3555555 899999864 4589999996 999999999999998 79998 7 99999963
No 90
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.20 E-value=7.3e-12 Score=102.93 Aligned_cols=55 Identities=36% Similarity=0.929 Sum_probs=45.8
Q ss_pred CCcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCC-CCccccCcccc
Q 008193 232 GSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPG-DQGWFCKFCEC 294 (574)
Q Consensus 232 g~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~g-de~W~C~~C~~ 294 (574)
.|..... +|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.| + |||+.|..
T Consensus 13 ~w~C~~C-~C~~C~~~~--~~~~ll~CD~-C~~~yH~~Cl~Ppl~--~~P~g~~--W~C~~C~~ 68 (70)
T 3asl_A 13 NRLCRVC-ACHLCGGRQ--DPDKQLMCDE-CDMAFHIYCLDPPLS--SVPSEDE--WYCPECRN 68 (70)
T ss_dssp TSCCTTT-SBTTTCCCS--CGGGEEECTT-TCCEEEGGGSSSCCS--SCCSSSC--CCCTTTSC
T ss_pred CeECCCC-CCcCCCCcC--CCCCEEEcCC-CCCceecccCCCCcC--CCCCCCC--cCCcCccC
Confidence 3455555 777888764 4589999996 999999999999998 79998 7 99999974
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.18 E-value=3.3e-12 Score=109.34 Aligned_cols=55 Identities=38% Similarity=0.850 Sum_probs=47.0
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
..++.+|.+|+.+++.+++.||+||+ |+.+||++|++|++ +|.|+ |||+.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~fH~~Cl~p~~----vP~g~--W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDM-CNLAVHQECYGVPY----IPEGQ--WLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSS-SCCCCCHHHHTCSS----CCSSC--CCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCC-CCchhhcccCCCCc----cCCCc--eECccccCcc
Confidence 35678999999986556689999996 99999999999983 78888 9999998654
No 92
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.15 E-value=9.6e-12 Score=110.86 Aligned_cols=77 Identities=26% Similarity=0.632 Sum_probs=60.9
Q ss_pred hhccCCCCCCCcCC-----cccCCCCcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCcc
Q 008193 213 QLDSLSSVGCIEGS-----VIATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGW 287 (574)
Q Consensus 213 ~~d~l~~~~~l~~s-----~l~~dg~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W 287 (574)
.+...+|..++... .+....|...+..+|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.|+ |
T Consensus 28 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~--~~~~ll~Cd~-C~~~yH~~Cl~ppl~--~~P~g~--W 100 (114)
T 2kwj_A 28 DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSE--NDDQLLFCDD-CDRGYHMYCLNPPVA--EPPEGS--W 100 (114)
T ss_dssp SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCT--TTTTEEECSS-SCCEEETTTSSSCCS--SCCSSC--C
T ss_pred CCCCccchhhCCChhhhhhccCCCccCccccCccCcccccC--CCCceEEcCC-CCccccccccCCCcc--CCCCCC--e
Confidence 34555677777643 3445567778888899998864 4689999996 999999999999998 799998 9
Q ss_pred ccCcccchh
Q 008193 288 FCKFCECKM 296 (574)
Q Consensus 288 ~C~~C~~k~ 296 (574)
||+.|....
T Consensus 101 ~C~~C~~~~ 109 (114)
T 2kwj_A 101 SCHLCWELL 109 (114)
T ss_dssp CCHHHHHHH
T ss_pred ECccccchh
Confidence 999997543
No 93
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.14 E-value=1.6e-11 Score=117.17 Aligned_cols=50 Identities=32% Similarity=0.883 Sum_probs=44.8
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.++++|.+|+.+ |+||+||+ |+++||++|++|||. .+|.|+ |+|+.|...
T Consensus 2 ~~~~~C~~C~~~-----g~ll~Cd~-C~~~~H~~C~~p~l~--~~p~~~--W~C~~C~~~ 51 (184)
T 3o36_A 2 PNEDWCAVCQNG-----GELLCCEK-CPKVFHLSCHVPTLT--NFPSGE--WICTFCRDL 51 (184)
T ss_dssp CSCSSCTTTCCC-----SSCEECSS-SSCEECTTTSSSCCS--SCCSSC--CCCTTTSCS
T ss_pred CCCCccccCCCC-----CeeeecCC-CCcccCccccCCCCC--CCCCCC--EECccccCc
Confidence 356899999976 78999996 999999999999998 799998 999999854
No 94
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.14 E-value=1.6e-11 Score=127.38 Aligned_cols=52 Identities=29% Similarity=0.444 Sum_probs=49.6
Q ss_pred CCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 443 RSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 443 r~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
+.+..|+..|+..||..|..++||+..+|++||.+|||+++||+|||||||+
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~ 418 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRM 418 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhccc
Confidence 3456899999999999999999999999999999999999999999999998
No 95
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.13 E-value=1.4e-11 Score=119.83 Aligned_cols=51 Identities=37% Similarity=0.877 Sum_probs=45.5
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
+.++++|.+|+.+ |+||+||+ |+++||++|++|||. .+|.|+ |+|+.|...
T Consensus 4 d~~~~~C~~C~~~-----g~ll~Cd~-C~~~~H~~Cl~p~l~--~~p~~~--W~C~~C~~~ 54 (207)
T 3u5n_A 4 DPNEDWCAVCQNG-----GDLLCCEK-CPKVFHLTCHVPTLL--SFPSGD--WICTFCRDI 54 (207)
T ss_dssp CSSCSSBTTTCCC-----EEEEECSS-SSCEECTTTSSSCCS--SCCSSC--CCCTTTSCS
T ss_pred CCCCCCCCCCCCC-----CceEEcCC-CCCccCCccCCCCCC--CCCCCC--EEeCceeCc
Confidence 3467899999976 78999996 999999999999998 799998 999999864
No 96
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.08 E-value=4.9e-11 Score=117.96 Aligned_cols=54 Identities=37% Similarity=0.944 Sum_probs=41.8
Q ss_pred CcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCC-CCccccCcccc
Q 008193 233 SVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPG-DQGWFCKFCEC 294 (574)
Q Consensus 233 ~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~g-de~W~C~~C~~ 294 (574)
+.+..+ .|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.| + |||+.|..
T Consensus 170 w~C~~c-~C~vC~~~~--~~~~lL~CD~-C~~~yH~~CL~PPL~--~vP~G~~--W~Cp~C~~ 224 (226)
T 3ask_A 170 RLCRVC-ACHLCGGRQ--DPDKQLMCDE-CDMAFHIYCLDPPLS--SVPSEDE--WYCPECRN 224 (226)
T ss_dssp SCCTTT-SCSSSCCCC--C--CCEECSS-SCCEECSCC--CCCC--SCCSSSC--CCCGGGC-
T ss_pred EecCCC-CCcCCCCCC--CCCCeEEcCC-CCcceeCccCCCCcc--cCCCCCC--CCCcCCcC
Confidence 444444 899999864 4589999996 999999999999998 79998 7 99999974
No 97
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.07 E-value=5.8e-11 Score=99.39 Aligned_cols=56 Identities=38% Similarity=0.920 Sum_probs=45.3
Q ss_pred CCcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccc
Q 008193 232 GSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (574)
Q Consensus 232 g~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~ 294 (574)
.|..... .|.+|+..+ +++.||+||+ |+++||++||+|||. .+|.++ .|||+.|..
T Consensus 21 ~W~C~~C-~C~vC~~~~--d~~~ll~CD~-C~~~yH~~Cl~PpL~--~~P~g~-~W~C~~C~~ 76 (77)
T 3shb_A 21 NRLCRVC-ACHLCGGRQ--DPDKQLMCDE-CDMAFHIYCLDPPLS--SVPSED-EWYCPECRN 76 (77)
T ss_dssp TSCCTTT-SBTTTCCCS--CGGGEEECTT-TCCEEETTTSSSCCS--SCCSSS-CCCCTTTC-
T ss_pred CCCCCCC-cCCccCCCC--CCcceeEeCC-CCCccCcccCCCccc--CCCCCC-ceECcCccc
Confidence 3555666 678888764 4578999996 999999999999998 799874 499999973
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.05 E-value=9.9e-11 Score=103.93 Aligned_cols=62 Identities=29% Similarity=0.815 Sum_probs=52.0
Q ss_pred ccCCCCcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 228 IATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 228 l~~dg~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
+....|...+..+|.+|+.... +++.||+||+ |+++||++||+|||. .+|.++ |||+.|..+
T Consensus 51 ~~~~~W~C~~C~~C~vC~~~~~-~~~~ll~Cd~-C~~~yH~~Cl~p~l~--~~P~~~--W~C~~C~~k 112 (112)
T 3v43_A 51 VKALRWQCIECKTCSSCRDQGK-NADNMLFCDS-CDRGFHMECCDPPLT--RMPKGM--WICQICRPR 112 (112)
T ss_dssp HHTSCCCCTTTCCBTTTCCCCC-TTCCCEECTT-TCCEECGGGCSSCCS--SCCSSC--CCCTTTSCC
T ss_pred hhccccccccCCccccccCcCC-CccceEEcCC-CCCeeecccCCCCCC--CCCCCC--eECCCCCCc
Confidence 3456788888889999997532 4578999996 999999999999998 799998 999999753
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.04 E-value=8.3e-11 Score=113.39 Aligned_cols=48 Identities=33% Similarity=0.953 Sum_probs=43.6
Q ss_pred cccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 238 d~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
+++|.+|+.+ |+||+||+ |+++||++|+.||+. .+|.|+ |+|+.|...
T Consensus 2 ~~~C~~C~~~-----g~ll~Cd~-C~~~~H~~Cl~p~l~--~~p~g~--W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP-----GDLVMCNQ-CEFCFHLDCHLPALQ--DVPGEE--WSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC-----SSCCCCTT-TCCBCCSTTSTTCCS--SCCCTT--CCTTTTSCS
T ss_pred CCcCccCCCC-----CceeECCC-CCchhccccCCCCcc--cCCCCC--CCCcCccCC
Confidence 4689999976 78999996 999999999999998 799998 999999865
No 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.02 E-value=9.2e-11 Score=96.84 Aligned_cols=55 Identities=24% Similarity=0.614 Sum_probs=45.5
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
..+..+|.+|+..+ +++.||+||+ |+.+||+.|+++++. .+|.++ |||+.|..+.
T Consensus 15 ~~~~~~C~~C~~~~--~~~~mi~CD~-C~~wfH~~Cv~~~~~--~~~~~~--w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPD--DGSPMIGCDD-CDDWYHWPCVGIMAA--PPEEMQ--WFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCC--SSCCEEECSS-SSSEEEHHHHTCSSC--CCSSSC--CCCTTTHHHH
T ss_pred CCCCcCCCCCCCCC--CCCCEEEcCC-CCcccccccCCCCcc--CCCCCC--EEChhccCch
Confidence 45678899999975 3457999996 999999999999987 567677 9999998653
No 101
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.01 E-value=1.6e-10 Score=102.03 Aligned_cols=75 Identities=28% Similarity=0.664 Sum_probs=58.7
Q ss_pred hccCCCCCCCcCCc--ccCCCCcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCc
Q 008193 214 LDSLSSVGCIEGSV--IATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKF 291 (574)
Q Consensus 214 ~d~l~~~~~l~~s~--l~~dg~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~ 291 (574)
+...+|..++...+ +....|...+..+|.+|+... ++..||+||+ |+++||++||+|||. .+|.++ |||+.
T Consensus 28 C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~--~~~~ll~Cd~-C~~~yH~~Cl~ppl~--~~P~g~--W~C~~ 100 (111)
T 2ysm_A 28 CGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSG--EDSKMLVCDT-CDKGYHTFCLQPVMK--SVPTNG--WKCKN 100 (111)
T ss_dssp SCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCS--CCTTEEECSS-SCCEEEGGGSSSCCS--SCCSSC--CCCHH
T ss_pred CCCCcChHHhCCccccccccCccCCcCCcccccCccC--CCCCeeECCC-CCcHHhHHhcCCccc--cCCCCC--cCCcC
Confidence 44556666665433 234678888888899999874 3467999995 999999999999998 799988 99999
Q ss_pred ccch
Q 008193 292 CECK 295 (574)
Q Consensus 292 C~~k 295 (574)
|...
T Consensus 101 C~~c 104 (111)
T 2ysm_A 101 CRIC 104 (111)
T ss_dssp HHCC
T ss_pred CcCc
Confidence 9754
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.89 E-value=1e-09 Score=95.57 Aligned_cols=56 Identities=27% Similarity=0.660 Sum_probs=43.9
Q ss_pred CCCcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 231 DGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 231 dg~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
++....+.+.| +|+..+ +++.||+||+ |+.+||+.|++|++. .+|+ . |||+.|..+
T Consensus 21 dg~~~~d~vrC-iC~~~~--~~~~mi~Cd~-C~~w~H~~C~~~~~~--~~p~-~--w~C~~C~~~ 76 (98)
T 2lv9_A 21 DGSYGTDVTRC-ICGFTH--DDGYMICCDK-CSVWQHIDCMGIDRQ--HIPD-T--YLCERCQPR 76 (98)
T ss_dssp TCCCCCCBCCC-TTSCCS--CSSCEEEBTT-TCBEEETTTTTCCTT--SCCS-S--BCCTTTSSS
T ss_pred cCCCCCCCEEe-ECCCcc--CCCcEEEcCC-CCCcCcCcCCCCCcc--CCCC-C--EECCCCcCC
Confidence 34444445667 898875 4689999995 999999999999987 6774 4 999999754
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.74 E-value=3.8e-09 Score=93.56 Aligned_cols=49 Identities=33% Similarity=0.859 Sum_probs=42.7
Q ss_pred ccccccccccccCCCCCCCCccccC--CCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCD--g~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
..++++|.+|+.+ |+||+|| + |+++||++||+ |. .+|.|+ |||+.|.+.
T Consensus 12 ~~~~~~C~~C~~~-----G~ll~CD~~~-Cp~~fH~~Cl~--L~--~~P~g~--W~Cp~c~C~ 62 (107)
T 4gne_A 12 QMHEDYCFQCGDG-----GELVMCDKKD-CPKAYHLLCLN--LT--QPPYGK--WECPWHQCD 62 (107)
T ss_dssp CSSCSSCTTTCCC-----SEEEECCSTT-CCCEECTGGGT--CS--SCCSSC--CCCGGGBCT
T ss_pred CCCCCCCCcCCCC-----CcEeEECCCC-CCcccccccCc--CC--cCCCCC--EECCCCCCC
Confidence 4567899999965 8999999 6 99999999999 55 799998 999999754
No 104
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.64 E-value=5.3e-09 Score=83.35 Aligned_cols=50 Identities=30% Similarity=0.734 Sum_probs=38.3
Q ss_pred ccccccccccccCCCCCCCCccccCCCcC---CcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~---rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
..+..+| +|+..+ .+.||+|| .|+ .+||+.|++ |. .+|.+. |||+.|..+
T Consensus 7 ~~e~~~C-~C~~~~---~g~mi~CD-~cdC~~~wfH~~Cvg--l~--~~p~g~--w~C~~C~~~ 59 (60)
T 2vnf_A 7 PNEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVG--LT--TKPRGK--WFCPRCSQE 59 (60)
T ss_dssp --CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGT--CS--SCCSSC--CCCHHHHC-
T ss_pred CCCCCEE-ECCCcC---CCCEEEeC-CCCCCCceEehhcCC--CC--cCCCCC--EECcCccCc
Confidence 3456778 899873 47899999 555 799999999 44 678887 999999754
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.63 E-value=4.1e-08 Score=84.59 Aligned_cols=50 Identities=30% Similarity=0.781 Sum_probs=39.7
Q ss_pred ccccccccccccCCCCCCCCccccCCC--cC-CcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~--C~-rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
..+..+| +|+..+ .+.||+|| . |+ .+||+.|++. . .+|.+. |||+.|...
T Consensus 33 ~~e~~yC-iC~~~~---~g~MI~CD-~~dC~~~WfH~~CVgl--~--~~p~g~--W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVGL--T--TKPRGK--WFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBC---CSCCCCCS-CSSCSCCCCCSTTTTC--S--SCCCSS--CCCTTTCCC
T ss_pred CCCCcEE-ECCCCC---CCCEeEec-CCCCCCCCEecccCCc--C--cCCCCC--EECcCccCc
Confidence 4456788 999874 47899999 5 55 6999999994 4 577777 999999764
No 106
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.58 E-value=3.5e-08 Score=81.24 Aligned_cols=50 Identities=32% Similarity=0.822 Sum_probs=39.9
Q ss_pred ccccccccccccCCCCCCCCccccCCC--cC-CcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~--C~-rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
..+..+| +|+..+ .+.||+|| . |+ .+||+.|++ |. .+|.+. |||+.|...
T Consensus 13 ~~~~~~C-~C~~~~---~g~MI~CD-~~~C~~~wfH~~Cvg--l~--~~p~g~--w~Cp~C~~~ 65 (71)
T 1wen_A 13 PNEPTYC-LCHQVS---YGEMIGCD-NPDCSIEWFHFACVG--LT--TKPRGK--WFCPRCSQE 65 (71)
T ss_dssp TTSCCCS-TTCCCS---CSSEECCS-CSSCSCCCEETTTTT--CS--SCCSSC--CCCTTTSSC
T ss_pred CCCCCEE-ECCCCC---CCCEeEee-CCCCCCccEecccCC--cC--cCCCCC--EECCCCCcc
Confidence 3456788 799874 47899999 6 66 699999999 44 578787 999999764
No 107
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.57 E-value=4e-08 Score=86.59 Aligned_cols=55 Identities=24% Similarity=0.537 Sum_probs=44.8
Q ss_pred cccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 234 VHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 234 ~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
...++++|.+|+.+. +.++||+|++ |++.||++|++|++. .++.+. |+|+.|..-
T Consensus 3 ~~~~~~~C~~C~~~g--~~~~ll~C~~-C~~~~H~~Cl~~~~~--~~~~~~--W~C~~C~~C 57 (111)
T 2ysm_A 3 SGSSGANCAVCDSPG--DLLDQFFCTT-CGQHYHGMCLDIAVT--PLKRAG--WQCPECKVC 57 (111)
T ss_dssp CCCCCSCBTTTCCCC--CTTTSEECSS-SCCEECTTTTTCCCC--TTTSTT--CCCTTTCCC
T ss_pred CCCCCCCCcCCCCCC--CCcCCeECCC-CCCCcChHHhCCccc--cccccC--ccCCcCCcc
Confidence 355788999999874 2256799995 999999999999986 577777 999999643
No 108
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.56 E-value=8.6e-09 Score=95.51 Aligned_cols=54 Identities=24% Similarity=0.622 Sum_probs=44.7
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCC---C--CCCCCCccccCcccchh
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTE---S--IPPGDQGWFCKFCECKM 296 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~---~--iP~gde~W~C~~C~~k~ 296 (574)
+..+++|.+|+.+ |+||+|| .|+++||..|+.|||... . .|.++ |+|+.|....
T Consensus 60 Dg~~d~C~vC~~G-----G~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~--W~C~~C~~~p 118 (142)
T 2lbm_A 60 DGMDEQCRWCAEG-----GNLICCD-FCHNAFCKKCILRNLGRKELSTIMDENNQ--WYCYICHPEP 118 (142)
T ss_dssp TSCBCSCSSSCCC-----SSEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTSTTC--CCCTTTCCCT
T ss_pred CCCCCeecccCCC-----CcEEeCC-CCCCeeeHhhcCCCCChhhhhhcccCCCC--CEeecccCcc
Confidence 3457899999987 8999999 599999999999998621 1 37787 9999998653
No 109
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.52 E-value=3.9e-08 Score=84.57 Aligned_cols=48 Identities=29% Similarity=0.765 Sum_probs=38.0
Q ss_pred ccccccccccccCCCCCCCCccccCCCcC---CcccccccCCCCCCCCCCCCCCccccCc-cc
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESIPPGDQGWFCKF-CE 293 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~---rafH~~Cl~PPL~~~~iP~gde~W~C~~-C~ 293 (574)
..+..+| +|+..+ .+.||+||+ |+ .+||+.|++. . .+|.+. |||+. |.
T Consensus 23 ~~~~~yC-iC~~~~---~g~MI~CD~-c~C~~eWfH~~CVgl--~--~~p~~~--W~Cp~cC~ 74 (90)
T 2jmi_A 23 NQEEVYC-FCRNVS---YGPMVACDN-PACPFEWFHYGCVGL--K--QAPKGK--WYCSKDCK 74 (90)
T ss_dssp -CCSCCS-TTTCCC---SSSEECCCS-SSCSCSCEETTTSSC--S--SCTTSC--CCSSHHHH
T ss_pred CCCCcEE-EeCCCC---CCCEEEecC-CCCccccCcCccCCC--C--cCCCCC--ccCChhhc
Confidence 3456788 899863 478999995 77 8999999994 3 567777 99999 86
No 110
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.48 E-value=2.5e-08 Score=80.03 Aligned_cols=49 Identities=27% Similarity=0.677 Sum_probs=38.3
Q ss_pred cccccccccccCCCCCCCCccccCCCcC---CcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~---rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.+..+| +|+..+ .+.||.|| .|+ .+||+.|++.. .+|.+. |||+.|..+
T Consensus 9 ~e~~yC-~C~~~~---~g~MI~CD-~c~C~~~WfH~~Cvgl~----~~p~~~--w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYC-LCNQVS---YGEMIGCD-NEQCPIEWFHFSCVSLT----YKPKGK--WYCPKCRGD 60 (62)
T ss_dssp -CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGTCS----SCCSSC--CCCHHHHTC
T ss_pred CCCcEE-ECCCCC---CCCeeeee-CCCCCcccEecccCCcC----cCCCCC--EECcCcccC
Confidence 445788 899863 47899999 555 99999999943 467777 999999754
No 111
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.47 E-value=2.9e-08 Score=78.89 Aligned_cols=49 Identities=35% Similarity=0.853 Sum_probs=38.6
Q ss_pred cccccccccccCCCCCCCCccccCCC--cC-CcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGT--CN-CAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~--C~-rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.+..+| +|+..+ .+.||.|| . |+ .+||+.|++ |. .+|.+. |||+.|..+
T Consensus 7 ~e~~yC-~C~~~~---~g~mi~CD-~~~C~~~wfH~~Cvg--l~--~~p~~~--w~Cp~C~~~ 58 (59)
T 3c6w_A 7 NEPTYC-LCHQVS---YGEMIGCD-NPDCPIEWFHFACVD--LT--TKPKGK--WFCPRCVQE 58 (59)
T ss_dssp -CCEET-TTTEEC---CSEEEECS-CTTCSSCEEETGGGT--CS--SCCSSC--CCCHHHHCC
T ss_pred CCCcEE-ECCCCC---CCCeeEee-CCCCCCCCEecccCC--cc--cCCCCC--EECcCccCc
Confidence 355778 899873 47899999 6 66 699999999 44 577787 999999753
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.25 E-value=7.2e-08 Score=88.01 Aligned_cols=54 Identities=26% Similarity=0.647 Sum_probs=43.5
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCC---CC--CCCCCccccCcccchh
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTE---SI--PPGDQGWFCKFCECKM 296 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~---~i--P~gde~W~C~~C~~k~ 296 (574)
+..+.+|.+|+.+ |+||+||. |+++||..|+.|++... .+ |.+. |+|..|..+.
T Consensus 54 Dg~~~~C~vC~dG-----G~LlcCd~-Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~--W~C~~C~~~p 112 (129)
T 3ql9_A 54 DGMDEQCRWCAEG-----GNLICCDF-CHNAFCKKCILRNLGRRELSTIMDENNQ--WYCYICHPEP 112 (129)
T ss_dssp TSCBSSCTTTCCC-----SEEEECSS-SSCEEEHHHHHHHTCHHHHHHHTCTTSC--CCCTTTCCGG
T ss_pred CCCCCcCeecCCC-----CeeEecCC-CchhhhHHHhCCCcchhHHHHhccCCCC--eEcCCcCCHH
Confidence 3456789999987 89999995 99999999999986411 23 6676 9999998764
No 113
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=2.6e-07 Score=75.86 Aligned_cols=50 Identities=28% Similarity=0.686 Sum_probs=39.0
Q ss_pred cccccccccccCCCCCCCCccccCCCcC---CcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCN---CAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~---rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+..+|. |+..+ .+.||.||+ |+ .+||+.|++.. ..|.+. |||+.|....
T Consensus 4 ~~~~yC~-C~~~~---~g~MI~CD~-cdC~~~WfH~~Cvgl~----~~p~~~--w~Cp~C~~~~ 56 (70)
T 1x4i_A 4 GSSGYCI-CNQVS---YGEMVGCDN-QDCPIEWFHYGCVGLT----EAPKGK--WYCPQCTAAM 56 (70)
T ss_dssp SCCCCST-TSCCC---CSSEECCSC-TTCSCCCEEHHHHTCS----SCCSSC--CCCHHHHHHH
T ss_pred CCCeEEE-cCCCC---CCCEeEeCC-CCCCccCCcccccccC----cCCCCC--EECCCCCccc
Confidence 3456784 98873 479999995 75 79999999954 467776 9999998654
No 114
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.24 E-value=2.9e-07 Score=73.54 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=41.4
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCC-CCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIP-PGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP-~gde~W~C~~C~~k~ 296 (574)
.+..+|.+|+..+. +++.||.||. |..+||..|++.... .+. ... |+|+.|..+.
T Consensus 4 ~e~~~C~~C~~~~~-~~~~mI~Cd~-C~~WfH~~Cvgl~~~--~~~~~~~--~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYA-ADEFWICCDL-CEMWFHGKCVKITPA--RAEHIKQ--YKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCC-SSSCEEECSS-SCCEEETTTTTCCTT--GGGGCSS--CCCHHHHTTT
T ss_pred CCCCCCCCCCCccC-CCCCEEEccC-CCCCCCccccCcChh--HhcCCCc--EECCCCcCcC
Confidence 45678999998742 3578999995 999999999996543 222 133 9999998654
No 115
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.13 E-value=1.2e-06 Score=71.18 Aligned_cols=55 Identities=20% Similarity=0.665 Sum_probs=38.6
Q ss_pred ccccccccccccCCCCCCCCccccCC-CcCCcccccccCCCCCC---CCCCCCCCccccCcccch
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDG-TCNCAFHQKCLDPPLDT---ESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg-~C~rafH~~Cl~PPL~~---~~iP~gde~W~C~~C~~k 295 (574)
+++..+| +|+..+ +++.||.||+ .|..+||..|++..-.. ..+|+ .|||+.|+..
T Consensus 7 ~e~~v~C-~C~~~~--~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~---~~~C~~Cr~~ 65 (68)
T 2rsd_A 7 PEAKVRC-ICSSTM--VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPP---VFYCELCRLS 65 (68)
T ss_dssp SSCEECC-TTCCCS--CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCS---SCCCHHHHHH
T ss_pred CCCCEEe-ECCCCc--CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCC---cEECcCccCc
Confidence 3445677 798764 4589999993 39999999999854321 12332 3999999754
No 116
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.11 E-value=1.1e-06 Score=71.71 Aligned_cols=51 Identities=18% Similarity=0.509 Sum_probs=39.7
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccc
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~ 294 (574)
..+..+| +|+..+ +++.||.||. |..+||..|++.... .+| +. |+|+.|..
T Consensus 16 ~~~~~~C-iC~~~~--~~~~MIqCd~-C~~WfH~~Cvgi~~~--~~~-~~--~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPF--AGRPMIECNE-CHTWIHLSCAKIRKS--NVP-EV--FVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCC--TTCCEEECTT-TCCEEETTTTTCCTT--SCC-SS--CCCHHHHT
T ss_pred CCCceEe-ECCCcC--CCCCEEECCC-CCccccccccCcCcc--cCC-Cc--EECCCCCC
Confidence 4456788 999874 3457999995 999999999997654 455 34 99999963
No 117
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.09 E-value=1.2e-06 Score=71.78 Aligned_cols=52 Identities=25% Similarity=0.687 Sum_probs=38.7
Q ss_pred cccccccccccCCCCCCC-CccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 236 HEHIICAKCKLREAFPDN-DIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g-~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
....+| +|+..+ +++ .||.||. |..+||..|++..... .+| .. |+|+.|..+
T Consensus 14 ~~~~~C-~C~~~~--~~g~~mI~Cd~-C~~W~H~~Cvg~~~~~-~~~-~~--~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKD--DDGERMLACDG-CGVWHHTRCIGINNAD-ALP-SK--FLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCS--CCSSCEEECSS-SCEEEETTTTTCCTTS-CCC-SC--CCCHHHHHH
T ss_pred CcceEe-eCCCcc--CCCCcEEECCC-CCCccCCeeeccCccc-cCC-Cc--EECCCccCC
Confidence 445789 699874 234 6999995 9999999999976432 344 44 999999754
No 118
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.02 E-value=1.7e-06 Score=72.07 Aligned_cols=57 Identities=19% Similarity=0.548 Sum_probs=40.3
Q ss_pred ccccccccccccCCCCCCCCccccC--CCcCCcccccccCCCCCCCC-CCCCCCccccCcccch
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTES-IPPGDQGWFCKFCECK 295 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCD--g~C~rafH~~Cl~PPL~~~~-iP~gde~W~C~~C~~k 295 (574)
..+..+| +|+..+ +++.||.|| . |..+||..|++.+-.... .+.....|||+.|...
T Consensus 13 ~~~~~~C-iC~~~~--~~g~MI~CD~~~-C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 13 PEIKVRC-VCGNSL--ETDSMIQCEDPR-CHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCCC-SSCCCC--CCSCEEECSSTT-TCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCCEEe-ECCCcC--CCCCEEEECCcc-CCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3456788 899974 458999999 7 999999999996543210 0111124999999754
No 119
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.01 E-value=6.4e-07 Score=65.01 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=16.0
Q ss_pred hhHHHhhcccccHHHHhhhhh
Q 008193 483 EKVNKWFKNARYLALKARKVE 503 (574)
Q Consensus 483 ~qV~vWFQNrR~~~~k~~~~e 503 (574)
+||+|||||||+ ++|++..+
T Consensus 1 rQVkIWFQNRRa-K~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRM-KWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHH-HHTSSHHH
T ss_pred CCceeccHHHHH-HHHHHhHH
Confidence 589999999999 55665554
No 120
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.93 E-value=6.8e-07 Score=84.16 Aligned_cols=55 Identities=20% Similarity=0.515 Sum_probs=39.7
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+..+| +|+..+. +++.||.||+ |+.+||..|++..... ..+.+. |+|+.|....
T Consensus 6 ~~~~~C-~C~~~~~-~~~~mi~Cd~-C~~WfH~~Cv~~~~~~-~~~~~~--~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPED-ESKFYIGCDR-CQNWYHGRCVGILQSE-AELIDE--YVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECC-TTSCEEECTT-TCCEEEHHHHTCCHHH-HTTCSS--CCCHHHHHHH
T ss_pred CCCcEe-eCCCCCC-CCCCEeECCC-CCchhChhhcCCchhh-ccCccC--eecCCCcchh
Confidence 456789 9998742 3577999995 9999999999864321 112344 9999998654
No 121
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.93 E-value=8.7e-07 Score=73.22 Aligned_cols=54 Identities=20% Similarity=0.553 Sum_probs=38.1
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCC-C--CCCCCccccCcccch
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTES-I--PPGDQGWFCKFCECK 295 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~-i--P~gde~W~C~~C~~k 295 (574)
.+..+| +|+..+ +++.||.||. |..+||..|++....... + +... |+|+.|...
T Consensus 14 ~~~~~C-~C~~~~--~~~~MI~Cd~-C~~WfH~~Cvgl~~~~~~~l~~~~~~--~~C~~C~~~ 70 (76)
T 1wem_A 14 PNALYC-ICRQPH--NNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGED--YICPNCTIL 70 (76)
T ss_dssp TTCCCS-TTCCCC--CSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCC--CCCHHHHHH
T ss_pred CCCCEE-ECCCcc--CCCCEEEeCC-CCCcEeCeEEccchhhhhhccCCCCe--EECcCCcCc
Confidence 335678 899875 3468999995 999999999996432000 0 1234 999999754
No 122
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.85 E-value=2.3e-06 Score=76.09 Aligned_cols=54 Identities=24% Similarity=0.508 Sum_probs=40.3
Q ss_pred ccccccccCCC-----CCCCCccccCCCcCCcccccccCCCCCC-CCCCCCCCccccCcccch
Q 008193 239 IICAKCKLREA-----FPDNDIVLCDGTCNCAFHQKCLDPPLDT-ESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 239 ~~C~vC~~~~~-----~~~g~lLlCDg~C~rafH~~Cl~PPL~~-~~iP~gde~W~C~~C~~k 295 (574)
++|.+|..+.. .+.++||+|++ |++.||++||++++.. ..+|.+. |+|+.|..-
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~-C~~~~H~~Cl~~~~~~~~~~~~~~--W~C~~C~~C 61 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD-CGRSGHPTCLQFTLNMTEAVKTYK--WQCIECKSC 61 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS-SCCEECTTTTTCCHHHHHHHHHTT--CCCGGGCCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC-CCCccchhhCCChhhhhhccCCCc--cCccccCcc
Confidence 57999987642 13469999996 9999999999987421 1356677 999999643
No 123
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.72 E-value=6.3e-06 Score=68.65 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=37.9
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCC-CCCCccccCcccch
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIP-PGDQGWFCKFCECK 295 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP-~gde~W~C~~C~~k 295 (574)
+..+| +|+..+. +++.||.||. |..+||..|++.... ... .. .|+|+.|...
T Consensus 11 ~~~~C-~C~~~~d-~~~~MIqCd~-C~~WfH~~Cvgl~~~--~~~~~~--~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYN-VNHFMIECGL-CQDWFHGSCVGIEEE--NAVDID--IYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCC-SSSCEEEBTT-TCCEEEHHHHTCCHH--HHTTCS--BBCCTTTTTT
T ss_pred CccEE-EcCCccC-CCCceEEcCC-CCCcEEeeecCcccc--cccCCC--eEECCCcccc
Confidence 34667 9998742 3578999995 999999999995433 121 13 4999999854
No 124
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.72 E-value=5.9e-06 Score=72.70 Aligned_cols=55 Identities=24% Similarity=0.594 Sum_probs=39.9
Q ss_pred cccccccccCCCCCCCCccccC-CCcCCcccccccCCCCCC-CC---CCCCCCccccCcccchh
Q 008193 238 HIICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLDT-ES---IPPGDQGWFCKFCECKM 296 (574)
Q Consensus 238 d~~C~vC~~~~~~~~g~lLlCD-g~C~rafH~~Cl~PPL~~-~~---iP~gde~W~C~~C~~k~ 296 (574)
...|.+|+.... +++.||.|| + |..+||..|++..... .. -|.+. |+|+.|....
T Consensus 3 ~~~C~iC~~p~~-~~~~mi~Cdd~-C~~WfH~~CVglt~~~~~~i~~~~~~~--~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVN-DDQDAILCEAS-CQKWFHRECTGMTESAYGLLTTEASAV--WACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCC-TTSCEEECTTT-TCCEEEGGGTTCCHHHHHHHHHCTTEE--ECCHHHHHTT
T ss_pred cCCCCCCCCccC-CCCCEEEecCC-cccccccccCCcCHHHHHhhccCCCCC--EECccccCcC
Confidence 467999999753 357899998 6 9999999999954210 00 24444 9999998654
No 125
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.69 E-value=2.4e-06 Score=69.20 Aligned_cols=54 Identities=24% Similarity=0.543 Sum_probs=38.0
Q ss_pred cccccccccccCCCCCCCCccccC-CCcCCcccccccCCCCCCC----CCCCCCCccccCccc
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLDTE----SIPPGDQGWFCKFCE 293 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCD-g~C~rafH~~Cl~PPL~~~----~iP~gde~W~C~~C~ 293 (574)
+....|.+|+.... ++..||.|| + |..+||..|++...... .-|.+. |+|+.|.
T Consensus 6 ~~~~~C~~C~~p~~-~~~~mI~CD~~-C~~WfH~~Cvglt~~~~~~l~~e~~~~--w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVN-DDQDAILCEAS-CQKWFHRICTGMTETAYGLLTAEASAV--WGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCC-TTSCEEEBTTT-TCCEEEHHHHTCCHHHHHHHHHCTTEE--ECCHHHH
T ss_pred CCcCcCccCCCccC-CCCCeEecccC-ccccCchhccCCCHHHHHHhhccCCCc--EECcCcc
Confidence 44578999999753 456899999 7 99999999998542100 024444 9999995
No 126
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.66 E-value=6.9e-06 Score=67.82 Aligned_cols=53 Identities=26% Similarity=0.578 Sum_probs=37.8
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
+..+| +|+..+. +++.||.||. |..+||..|++.... .++..+ .|+|+.|...
T Consensus 9 ~~~yC-iC~~~~~-~~~~MI~Cd~-C~~WfH~~Cvg~~~~--~~~~~~-~~~C~~C~~~ 61 (75)
T 3kqi_A 9 VPVYC-VCRLPYD-VTRFMIECDA-CKDWFHGSCVGVEEE--EAPDID-IYHCPNCEKT 61 (75)
T ss_dssp CCEET-TTTEECC-TTSCEEECTT-TCCEEEHHHHTCCTT--TGGGBS-SCCCHHHHHH
T ss_pred CeeEE-ECCCcCC-CCCCEEEcCC-CCCCEeccccccccc--ccCCCC-EEECCCCccc
Confidence 34566 8988641 3578999995 999999999996543 333222 3999999754
No 127
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.61 E-value=4.7e-06 Score=73.78 Aligned_cols=55 Identities=22% Similarity=0.469 Sum_probs=40.2
Q ss_pred cccccccccCCC----CCCCCccccCCCcCCcccccccCC--CCCCCCCCCCCCccccCcccchh
Q 008193 238 HIICAKCKLREA----FPDNDIVLCDGTCNCAFHQKCLDP--PLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 238 d~~C~vC~~~~~----~~~g~lLlCDg~C~rafH~~Cl~P--PL~~~~iP~gde~W~C~~C~~k~ 296 (574)
..+|.+|..... ...++||.|++ |++.||++||++ ++. ..++.++ |+|+.|..-.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl~~~~~~~-~~~~~~~--W~C~~C~~C~ 65 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCLKFSPELT-VRVKALR--WQCIECKTCS 65 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHHTCCHHHH-HHHHTSC--CCCTTTCCBT
T ss_pred CccccccCCchhhCcCCCchhceEhhh-cCCCCCCchhcCCHHHH-HHhhccc--cccccCCccc
Confidence 467889977531 13468999996 999999999974 232 1466777 9999997443
No 128
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.58 E-value=8.8e-06 Score=62.72 Aligned_cols=48 Identities=29% Similarity=0.616 Sum_probs=34.6
Q ss_pred cccccccCCCCCCCCccccC-CCcCCcccccccCCCCCCCCCCCCCCccccCccc
Q 008193 240 ICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCE 293 (574)
Q Consensus 240 ~C~vC~~~~~~~~g~lLlCD-g~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~ 293 (574)
.|.+|+..+. ++..||.|| + |..+||..|++.... ...... |+|+.|.
T Consensus 4 ~cc~C~~p~~-~~~~mI~Cd~~-C~~WfH~~Cvgl~~~--~~~~~~--~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCK-DKVDWVQCDGG-CDEWFHQVCVGVSPE--MAENED--YICINCA 52 (52)
T ss_dssp SCTTCCCCCC-TTCCEEECTTT-TCCEEETTTTTCCHH--HHHHSC--CCCSCC-
T ss_pred cCCCCcCccC-CCCcEEEeCCC-CCccCcccccCCCcc--ccCCCC--EECCCCC
Confidence 4778888752 356799999 7 999999999995432 111244 9999994
No 129
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.56 E-value=3.2e-05 Score=65.54 Aligned_cols=54 Identities=22% Similarity=0.760 Sum_probs=39.2
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCC--------CCCCCCCCCCCccccCccc
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPP--------LDTESIPPGDQGWFCKFCE 293 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PP--------L~~~~iP~gde~W~C~~C~ 293 (574)
..+..|.||..-. .+.++-|. .|.+.||..||.++ +.....-..+.+|.|+.|.
T Consensus 13 ~~D~~C~VC~~~t---~~~l~pCR-vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 13 VNDEMCDVCEVWT---AESLFPCR-VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCSCCCTTTCCCC---SSCCSSCS-SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCcccCcccccc---ccceeccc-cccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 4678999999863 47899999 79999999999875 1110111223459999995
No 130
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.55 E-value=2.2e-05 Score=60.37 Aligned_cols=46 Identities=20% Similarity=0.599 Sum_probs=35.5
Q ss_pred ccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCccc
Q 008193 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCE 293 (574)
Q Consensus 239 ~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~ 293 (574)
.+| +|+..+ +++.||.||. |..+||..|++.... .+| +. |+|+.|.
T Consensus 5 ~~C-~C~~~~--~~~~MI~Cd~-C~~W~H~~Cvgi~~~--~~~-~~--~~C~~C~ 50 (52)
T 3o7a_A 5 VTC-FCMKPF--AGRPMIECNE-CHTWIHLSCAKIRKS--NVP-EV--FVCQKCR 50 (52)
T ss_dssp BCS-TTCCBC--TTCCEEECTT-TCCEEETTTTTCCGG--GCC-SS--CCCHHHH
T ss_pred eEE-EeCCcC--CCCCEEEcCC-CCccccccccCCCcc--cCC-Cc--EECcCCC
Confidence 345 688764 3569999995 999999999997644 455 33 9999996
No 131
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.26 E-value=0.0001 Score=70.81 Aligned_cols=56 Identities=20% Similarity=0.476 Sum_probs=38.2
Q ss_pred ccccccccCCCCCC--CCccccCCCcCCcccccccCCCCCC----CCCCCCCCccccCcccchh
Q 008193 239 IICAKCKLREAFPD--NDIVLCDGTCNCAFHQKCLDPPLDT----ESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 239 ~~C~vC~~~~~~~~--g~lLlCDg~C~rafH~~Cl~PPL~~----~~iP~gde~W~C~~C~~k~ 296 (574)
.+|.+|+..+..++ ..||.||+ |..+||..|++..-.. ..+|+. ..|+|+.|....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~-C~~W~H~~Cvgi~~~~~e~~~~~pe~-~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGK-CDRWVHSKCENLSDEMYEILSNLPES-VAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTT-TCCEEEGGGSSCCHHHHHHHHHSHHH-HCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCC-CCcccchhccccCHHHHHHhhcCCCC-CeeECcCCCCCC
Confidence 47999999864322 34999995 9999999999853200 012321 139999998754
No 132
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.98 E-value=0.0002 Score=78.56 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=29.3
Q ss_pred CCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 252 DNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 252 ~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
+..||.||+ |+.+||..|++..-. .... ...|+||.|...
T Consensus 55 ~~~mI~CD~-C~~WfH~~CVgi~~~--~a~~-~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDS-CQTWYHFLCSGLEQF--EYYL-YEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTT-TCCEEEGGGTTCCGG--GTTT-EEECCCTTTHHH
T ss_pred CCCEEECCC-CCcCCCCcCCCCChh--HhcC-CCeEECcCCcCC
Confidence 467999995 999999999995532 1111 124999999864
No 133
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.92 E-value=8.5e-05 Score=81.06 Aligned_cols=55 Identities=18% Similarity=0.391 Sum_probs=38.3
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+..+| +|+..+. +++.||.||. |..+||..|++..-. .... ...|+|+.|....
T Consensus 35 ~~~~yC-~C~~~~d-~~~~MIqCd~-C~~WfH~~Cvgl~~~--~~~~-~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYD-VNRFMIECDI-CKDWFHGSCVGVEEH--HAVD-IDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECC-TTSCEEEBTT-TCCEEEHHHHTCCGG--GGGG-EEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCC-CCCCeEEccC-CCCceeeeecCcCcc--cccC-CCEEECCCCcCCc
Confidence 334566 9998641 2588999995 999999999985432 2211 1249999998643
No 134
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=96.16 E-value=0.00036 Score=75.42 Aligned_cols=51 Identities=22% Similarity=0.452 Sum_probs=36.1
Q ss_pred cccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 240 ICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 240 ~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.+++|+..+. +++.||.||. |..+||..|++..-. ..+.. ..|+|+.|...
T Consensus 6 ~yCiC~~~~d-~~~~MIqCD~-C~~WfH~~CVgi~~~--~~~~~-~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYCLCRLPYD-VTRFMIECDM-CQDWFHGSCVGVEEE--KAADI-DLYHCPNCEVL 56 (447)
T ss_dssp EETTTTEECC-TTSCEEECTT-TCCEEEHHHHTCCHH--HHTTE-EECCCHHHHHH
T ss_pred eEEeCCCcCC-CCCCeEEcCC-CCcccccccCCcCcc--cccCC-CEEECCCCccc
Confidence 3458988641 3588999995 999999999985432 12111 24999999764
No 135
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.58 E-value=0.0035 Score=55.12 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=28.8
Q ss_pred CCccccCCCcCCcccccccCCCCCCCCCCCC--CCccccCcccch
Q 008193 253 NDIVLCDGTCNCAFHQKCLDPPLDTESIPPG--DQGWFCKFCECK 295 (574)
Q Consensus 253 g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~g--de~W~C~~C~~k 295 (574)
..||.|+ .|+.+||..|++++.. .++.. .+.|+|+.|...
T Consensus 73 ~~m~~C~-~C~~~~H~~C~~~~~~--~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 73 KKLMECC-ICNEIVHPGCLQMDGE--GLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GSCEEET-TTCCEECGGGCCSCCC--CEECSSSSSEEECTTTC--
T ss_pred cceEEee-ecCCeEECCCCCCCcc--ccccccCCCCeECCCCcCC
Confidence 4588999 5999999999998754 23221 124999999854
No 136
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=94.46 E-value=0.009 Score=52.45 Aligned_cols=40 Identities=20% Similarity=0.551 Sum_probs=28.0
Q ss_pred CccccCCCcCCcccccccCCCCC----CCCCCCCCCccccCcccch
Q 008193 254 DIVLCDGTCNCAFHQKCLDPPLD----TESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 254 ~lLlCDg~C~rafH~~Cl~PPL~----~~~iP~gde~W~C~~C~~k 295 (574)
.||.||. |..|||..|.+..-. ...+|... .|.|+.|...
T Consensus 1 ~mi~c~~-c~~w~H~~c~~~~~~~~~~l~~lp~~~-~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGK-CDRWVHSKCENLSDEMYEILSNLPESV-AYTCVNCTER 44 (140)
T ss_dssp CCCCCSC-CSSCHHHHHCCCCHHHHHHHHSSCTTT-TCCSSCCTTT
T ss_pred Ccccccc-CCCccCCcccccCHHHHHHHhhccccc-eeeCcccccc
Confidence 3899995 999999999874310 01455332 4999999754
No 137
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.45 E-value=0.033 Score=45.67 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=43.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
...++.-.+.|+.+|..+..+..+.-+.|+.+.+|+..||+.||--|-.
T Consensus 11 ~~~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k~~ 59 (70)
T 2ys9_A 11 IPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLP 59 (70)
T ss_dssp CCCCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHHSC
T ss_pred CCCCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhccc
Confidence 3456667789999999999999999999999999999999999965443
No 138
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=93.88 E-value=0.032 Score=49.18 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=38.7
Q ss_pred hccCCCCCCCcCCcccCCCCcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCcccc
Q 008193 214 LDSLSSVGCIEGSVIATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFC 289 (574)
Q Consensus 214 ~d~l~~~~~l~~s~l~~dg~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C 289 (574)
++...|..++.-..+....|....+ .|.+|+.. ..+.|. .|+.+||..|+.+.|. ..+.+. |+|
T Consensus 35 Cp~~fH~~Cl~L~~~P~g~W~Cp~c-~C~~C~k~------~~~~C~-~Cp~sfC~~c~~g~l~--~~~~~~--~~c 98 (107)
T 4gne_A 35 CPKAYHLLCLNLTQPPYGKWECPWH-QCDECSSA------AVSFCE-FCPHSFCKDHEKGALV--PSALEG--RLC 98 (107)
T ss_dssp CCCEECTGGGTCSSCCSSCCCCGGG-BCTTTCSB------CCEECS-SSSCEECTTTCTTSCE--ECTTTT--CEE
T ss_pred CCcccccccCcCCcCCCCCEECCCC-CCCcCCCC------CCcCcC-CCCcchhhhccCCcce--ecCCCC--cee
Confidence 3445566666532232222333322 24455554 237899 5999999999999997 345444 998
No 139
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=86.67 E-value=0.13 Score=48.44 Aligned_cols=55 Identities=20% Similarity=0.547 Sum_probs=39.3
Q ss_pred ccccccccccCCCCCCCCccccCC-CcCCcccccccCCCCCCCCCC--CCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDG-TCNCAFHQKCLDPPLDTESIP--PGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg-~C~rafH~~Cl~PPL~~~~iP--~gde~W~C~~C~~k~ 296 (574)
.+.+|.+|+.+ +.||+||. .|.+.|-..|+.--+....+- ...++|.|-.|...+
T Consensus 78 ~~~yC~wC~~G-----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 78 YQSYCTICCGG-----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SBSSCTTTSCC-----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CcceeeEecCC-----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 36799999987 89999992 399999999987554421111 112359999998654
No 140
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=83.59 E-value=0.15 Score=54.14 Aligned_cols=54 Identities=17% Similarity=0.539 Sum_probs=39.5
Q ss_pred ccccccccccCCCCCCCCccccC--CCcCCcccccccCCCCCCCCCC--CCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCD--GTCNCAFHQKCLDPPLDTESIP--PGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCD--g~C~rafH~~Cl~PPL~~~~iP--~gde~W~C~~C~~k~ 296 (574)
.+.+|..|+.+ +++|+|| . |.++|-..|+.--+....+- .....|.|-.|....
T Consensus 92 ~~~yCr~C~~G-----g~l~~Cdn~~-C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCSG-----ETLLICGNPD-CTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCCC-----SSCEECCSTT-CCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCCC-----CeEEEeCCCC-CCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 46789999987 8999999 6 99999999987555321111 112359999998764
No 141
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=80.49 E-value=1 Score=42.96 Aligned_cols=50 Identities=12% Similarity=0.278 Sum_probs=32.2
Q ss_pred ccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCC-CCCCccccCcccch
Q 008193 243 KCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIP-PGDQGWFCKFCECK 295 (574)
Q Consensus 243 vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP-~gde~W~C~~C~~k 295 (574)
.|+.... -.-.||.|+. |.++||..|+..+... -+| ...-...|..|...
T Consensus 9 YCG~~~~-~~~~mLqC~~-C~qWFH~~Cl~~~~~~-~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 9 DEENGRQ-LGEVELQCGI-CTKWFTADTFGIDTSS-CLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp --CTTCC-TTSCEEECTT-TCCEEEGGGGTCCCTT-CCTTCCSEEEECTTTSTT
T ss_pred EcCCCCC-CCceeEeecc-ccceecHHHhcccccC-ccccceeEEEEccccCCC
Confidence 4665321 2356999995 9999999999866542 344 22224669999763
No 142
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.93 E-value=0.76 Score=37.97 Aligned_cols=52 Identities=21% Similarity=0.615 Sum_probs=33.7
Q ss_pred cccccccccccCCCCCCCCccc-cCCCc---CCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVL-CDGTC---NCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLl-CDg~C---~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+...|.+|..... +++.+++ |. | ...||..|+...|.. .+. ..||.|....
T Consensus 13 ~~~~~C~IC~~~~~-~~~~l~~pC~--C~Gs~h~fH~~Cl~~Wl~~----~~~--~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGD-DESPLITPCH--CTGSLHFVHQACLQQWIKS----SDT--RCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCC-SSSCEECSSS--CCSSSCCEETTHHHHHHHH----HCC--SBCSSSCCBC
T ss_pred CCCCCCeEcCcccc-CCCeeEeccc--cCCcCCeeCHHHHHHHHhh----CCC--CCCCCCCCee
Confidence 44578999987532 2344543 32 4 389999999977652 122 5799998653
No 143
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=78.05 E-value=1.8 Score=32.92 Aligned_cols=47 Identities=6% Similarity=0.263 Sum_probs=33.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 493 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR 493 (574)
..||++....+...+... ++......++|+++|+++.+|..|....+
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468998887775555443 32122356999999999999999976433
No 144
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=77.70 E-value=1.1 Score=32.95 Aligned_cols=49 Identities=22% Similarity=0.507 Sum_probs=32.6
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
+...|.+|...... +..++..-. |...||..|+...+.. . ..||.|+..
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~~~~-C~H~f~~~Ci~~w~~~------~--~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELED-GEEARFLPR-CGHGFHAECVDMWLGS------H--STCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCT-TSCCEECSS-SCCEECTTHHHHTTTT------C--CSCSSSCCC
T ss_pred CCCcCccCCccccC-CCceEECCC-CCCcccHHHHHHHHHc------C--CcCcCCCCE
Confidence 34679999876421 222333433 8899999999877651 2 569999754
No 145
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=77.65 E-value=3.3 Score=35.81 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=39.3
Q ss_pred CccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 444 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 444 ~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
+|.+||.++...+-..+..++.+.. .+||++||++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 4568999999888777766766543 46999999999999999988776
No 146
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=76.80 E-value=3.8 Score=28.38 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccc
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 493 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR 493 (574)
.+++++...+...+... + ...++|+.||++...|..|....+
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 57888876666666433 3 366899999999999999986544
No 147
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=76.12 E-value=2.8 Score=44.20 Aligned_cols=59 Identities=25% Similarity=0.562 Sum_probs=35.7
Q ss_pred ccccccccccccCCCCCCCCc--cccCC-CcCCcccccccCCCCCCCCCCCC-----CCccccCcccchh
Q 008193 235 HHEHIICAKCKLREAFPDNDI--VLCDG-TCNCAFHQKCLDPPLDTESIPPG-----DQGWFCKFCECKM 296 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~l--LlCDg-~C~rafH~~Cl~PPL~~~~iP~g-----de~W~C~~C~~k~ 296 (574)
.+....|.+|-.... +++.+ ..|+. .|...||..|+...+. ..+.. -..=-||.|..+.
T Consensus 305 ee~~~ECaICys~~l-~~g~lPdk~C~n~~C~h~FH~~CL~kWLr--s~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 305 DNEELRCNICFAYRL-DGGEVPLVSCDNAKCVLKCHAVCLEEWFK--TLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCSCCSCSSSCCSSC-TTCCCCCBCCSCTTCCCCBCSGGGHHHHH--HHHSSSCTTTCCEEECTTTCCEE
T ss_pred ccCCccCcccceeec-CCCCCccccccCCccCCccchHHHHHHHH--hCCCccccccccCCCCCCCCCcC
Confidence 345677999998643 22333 46872 5999999999986443 11110 0001399998654
No 148
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.57 E-value=1.2 Score=36.52 Aligned_cols=48 Identities=21% Similarity=0.426 Sum_probs=33.9
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccc
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~ 294 (574)
+....|.+|...-. .-+.|- .|...||..|+.-.|.+ ... =.||.|..
T Consensus 13 ~~i~~C~IC~~~i~----~g~~C~-~C~h~fH~~Ci~kWl~~--~~~----~~CP~Cr~ 60 (74)
T 2ct0_A 13 DAVKICNICHSLLI----QGQSCE-TCGIRMHLPCVAKYFQS--NAE----PRCPHCND 60 (74)
T ss_dssp SSSCBCSSSCCBCS----SSEECS-SSCCEECHHHHHHHSTT--CSS----CCCTTTCS
T ss_pred CCCCcCcchhhHcc----cCCccC-CCCchhhHHHHHHHHHh--cCC----CCCCCCcC
Confidence 34578999998642 124687 59999999999987763 211 24999973
No 149
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=73.52 E-value=3.2 Score=34.84 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=33.9
Q ss_pred CCCCCcCCcccCCCCcccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchhhh
Q 008193 219 SVGCIEGSVIATDGSVHHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKMEI 298 (574)
Q Consensus 219 ~~~~l~~s~l~~dg~~~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~~~ 298 (574)
|.+.|+.+.+..........+.|.+|+--+....|+ .-...+-+.++. .+|+ + |.||.|-.....
T Consensus 8 ~~~~~~~~~~g~~~~~em~~y~C~vCGyvYD~~~Gd----------p~~gI~pGT~fe--dlPd-d--W~CPvCga~K~~ 72 (81)
T 2kn9_A 8 HMGTLEAQTQGPGSMNDYKLFRCIQCGFEYDEALGW----------PEDGIAAGTRWD--DIPD-D--WSCPDCGAAKSD 72 (81)
T ss_dssp CCCCCCCCCCCCCCSSCCCEEEETTTCCEEETTTCB----------TTTTBCTTCCTT--TSCT-T--CCCTTTCCCGGG
T ss_pred cccceeecccCCcCCCCcceEEeCCCCEEEcCCcCC----------cccCcCCCCChh--HCCC-C--CcCCCCCCCHHH
Confidence 345555555543322223457788888643211111 112233334444 6775 3 999999876543
Q ss_pred h
Q 008193 299 I 299 (574)
Q Consensus 299 ~ 299 (574)
+
T Consensus 73 F 73 (81)
T 2kn9_A 73 F 73 (81)
T ss_dssp E
T ss_pred c
Confidence 3
No 150
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=72.18 E-value=0.62 Score=38.70 Aligned_cols=49 Identities=22% Similarity=0.534 Sum_probs=32.9
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.+...|.+|..... .+..+..- .|...||..|+...+.. . -.||.|+..
T Consensus 38 ~~~~~C~IC~~~~~--~~~~~~~l-~C~H~Fh~~Ci~~wl~~------~--~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYV--KGDVATEL-PCHHYFHKPCVSIWLQK------S--GTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECC--TTCEEEEE-TTTEEEEHHHHHHHHTT------T--CBCTTTCCB
T ss_pred CCCCCCcccChhhc--CCCcEEec-CCCChHHHHHHHHHHHc------C--CcCcCcCcc
Confidence 44678999986532 23333333 38899999999976651 1 369999854
No 151
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=72.11 E-value=5.1 Score=32.79 Aligned_cols=45 Identities=16% Similarity=0.384 Sum_probs=32.8
Q ss_pred CCCccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcc
Q 008193 442 RRSFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKN 491 (574)
Q Consensus 442 kr~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQN 491 (574)
++++..|+.++....-..+... + ...+||++||++...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 3445689998865555556432 2 3568999999999999999753
No 152
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=71.20 E-value=1 Score=39.18 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=28.9
Q ss_pred cccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 238 d~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
..+|.+|+.. -|+ .|...||++|+++|. |.|..|....
T Consensus 7 C~~C~~C~~~---------~C~-~C~~c~~~~~~~~~~-----------~~~~~c~~~~ 44 (117)
T 4bbq_A 7 CRKCKACVQG---------ECG-VCHYCRDMKKFGGPG-----------RMKQSCVLRQ 44 (117)
T ss_dssp CSCSHHHHSC---------CCS-CSHHHHHSGGGTSCC-----------CSCCCCGGGC
T ss_pred CCcCcCcCCc---------CCC-CCCCCcCCcccCCCC-----------ccccchhhee
Confidence 5678888875 298 599999999998752 7787776543
No 153
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=69.86 E-value=3.6 Score=29.06 Aligned_cols=43 Identities=7% Similarity=0.254 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.+++++...+...+... ....+||+.||++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 46777776666666543 23578999999999999999976544
No 154
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=67.16 E-value=5.6 Score=32.61 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
.+++.|.++|...|...- .-.++|..||++...|+.+...-|. ++|..
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~-~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVR-ALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHH-HHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHH-HHHHH
Confidence 599999999998764432 4578999999999999999988887 55544
No 155
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=67.02 E-value=1 Score=34.96 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=33.1
Q ss_pred ccccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 235 HHEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 235 ~~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
......|.+|..... .+..+..- .|...||..|+...+.. . ..||.|+...
T Consensus 11 ~~~~~~C~IC~~~~~--~~~~~~~~-~C~H~fc~~Ci~~~~~~------~--~~CP~Cr~~~ 61 (69)
T 2kiz_A 11 EDTEEKCTICLSILE--EGEDVRRL-PCMHLFHQVCVDQWLIT------N--KKCPICRVDI 61 (69)
T ss_dssp TTCCCSBTTTTBCCC--SSSCEEEC-TTSCEEEHHHHHHHHHH------C--SBCTTTCSBS
T ss_pred CCCCCCCeeCCcccc--CCCcEEEe-CCCCHHHHHHHHHHHHc------C--CCCcCcCccc
Confidence 345678999987532 23333334 39999999999866541 1 4699998543
No 156
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=64.20 E-value=3.2 Score=32.86 Aligned_cols=50 Identities=28% Similarity=0.494 Sum_probs=32.4
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.....|.+|..... ....+.-- .|...||..|+...+.. . ..||.|+...
T Consensus 13 ~~~~~C~IC~~~~~--~~~~~~~~-~C~H~fc~~Ci~~~~~~------~--~~CP~Cr~~~ 62 (78)
T 2ect_A 13 GSGLECPVCKEDYA--LGESVRQL-PCNHLFHDSCIVPWLEQ------H--DSCPVCRKSL 62 (78)
T ss_dssp SSSCCCTTTTSCCC--TTSCEEEC-TTSCEEETTTTHHHHTT------T--CSCTTTCCCC
T ss_pred CCCCCCeeCCcccc--CCCCEEEe-CCCCeecHHHHHHHHHc------C--CcCcCcCCcc
Confidence 44578999987532 22222222 28889999999876541 1 4699998653
No 157
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=61.91 E-value=5.3 Score=30.38 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHh
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 499 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~ 499 (574)
.+|+.+..+|...|... ..-.++|..||+++..|..|...-+. .++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~-~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARD-ALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHH-HHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHH-HHHH
Confidence 58999999999877443 23468999999999999999987777 4443
No 158
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.53 E-value=0.81 Score=36.27 Aligned_cols=49 Identities=27% Similarity=0.623 Sum_probs=33.1
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.+...|.+|.... ..+..+..- .|...||..|+...+.. . ..||.|+..
T Consensus 21 ~~~~~C~IC~~~~--~~~~~~~~l-~C~H~fh~~Ci~~w~~~------~--~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDF--ESRQLLRVL-PCNHEFHAKCVDKWLKA------N--RTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEEC--CBTCEEEEE-TTTEEEETTHHHHHHHH------C--SSCTTTCCC
T ss_pred CCCCCCeECCccc--CCCCeEEEE-CCCCHhHHHHHHHHHHc------C--CcCcCcCCc
Confidence 4567899999753 224444444 38889999999876541 1 469999754
No 159
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=58.88 E-value=2.2 Score=37.81 Aligned_cols=27 Identities=33% Similarity=0.618 Sum_probs=0.0
Q ss_pred CcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 261 TCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 261 ~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.|.-.||..|+.+-|.. . -.||.|+..
T Consensus 83 ~C~H~FH~~CI~~Wl~~------~--~~CP~Cr~~ 109 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKT------R--QVCPLDNRE 109 (117)
T ss_dssp -----------------------------------
T ss_pred CcCceEcHHHHHHHHHc------C--CcCCCCCCe
Confidence 49999999999987762 1 359999864
No 160
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.76 E-value=2.8 Score=33.99 Aligned_cols=50 Identities=26% Similarity=0.559 Sum_probs=31.3
Q ss_pred ccccccccccCCCC---------CCCC-ccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 237 EHIICAKCKLREAF---------PDND-IVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 237 ed~~C~vC~~~~~~---------~~g~-lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
++..|.+|...-.. ..++ ++.-- .|.-.||..|+..-|.. - -.||.|+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~--~------~~CP~CR~~ 73 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWG-ECNHSFHNCCMSLWVKQ--N------NRCPLCQQD 73 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TTSCEEEHHHHHHHTTT--C------CBCTTTCCB
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeC-CCCCccChHHHHHHHHh--C------CCCCCcCCC
Confidence 45668888775321 0122 22222 39999999999987762 1 269999854
No 161
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=58.39 E-value=7.6 Score=32.28 Aligned_cols=43 Identities=7% Similarity=0.082 Sum_probs=35.0
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+|+.|.++|...|..-. -.++|..||+++..|+.+..+-+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4699999999998644332 378999999999999998887776
No 162
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=58.19 E-value=1.7 Score=31.96 Aligned_cols=49 Identities=16% Similarity=0.398 Sum_probs=32.1
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
....|.+|..... +.+..+..- .|...||..|+...+.. . ..||.|+..
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~~~-~CgH~fc~~Ci~~~~~~------~--~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIH-TSRVVAHVL-PCGHLLHRTCYEEMLKE------G--YRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCC-TTTSCEEEC-TTSCEEETTHHHHHHHH------T--CCCTTSCCS
T ss_pred CCCcCcccChhhc-CCCcCeEec-CCCCcccHHHHHHHHHc------C--CcCCCCCCc
Confidence 3567999987532 223344455 38899999999865541 1 469999754
No 163
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=57.76 E-value=12 Score=31.69 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=35.7
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 445 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 445 r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
...||+.+.++|..++..-. -.++|..||+++..|+.+.++-+.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35799999999988664332 389999999999999998886655
No 164
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=57.22 E-value=12 Score=30.73 Aligned_cols=46 Identities=4% Similarity=0.192 Sum_probs=32.4
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..||+++....-..+... ......++|+++|+++.+|..|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS---DGASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG---GGSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHc---CCChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 468888876655555332 0123679999999999999999865443
No 165
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=56.34 E-value=1.1 Score=35.06 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=32.1
Q ss_pred ccccccccccCCCCCCCCccccCCCcCC---cccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNC---AFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~r---afH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
+...|.+|.... ++.-+.-|. |.. .||..||...+.. .+. +.|+.|...
T Consensus 5 ~~~~CrIC~~~~--~~~l~~PC~--C~gs~~~~H~~Cl~~W~~~----~~~--~~C~~C~~~ 56 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNERFRACG--CTGELENVHRSCLSTWLTI----SRN--TACQICGVV 56 (60)
T ss_dssp SCCEETTTTEEC--SCCCCCSCC--CSSGGGSCCHHHHHHHHHH----HTC--SBCTTTCCB
T ss_pred CCCEeEEeecCC--CCceecCcC--CCCchhhhHHHHHHHHHHh----CCC--CccCCCCCe
Confidence 456799998752 122233443 655 8999999987651 134 889999754
No 166
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=55.68 E-value=2.8 Score=36.37 Aligned_cols=27 Identities=33% Similarity=0.618 Sum_probs=21.2
Q ss_pred CcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 261 TCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 261 ~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.|...||..|+.+-|.. . -.||.|+..
T Consensus 72 ~C~H~FH~~Ci~~Wl~~------~--~~CP~Cr~~ 98 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKT------R--QVCPLDNRE 98 (106)
T ss_dssp TTSCEEEHHHHHHHHTT------C--SBCSSSCSB
T ss_pred ccCcEECHHHHHHHHHc------C--CcCcCCCCc
Confidence 49999999999987652 1 469999864
No 167
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=55.35 E-value=3.6 Score=35.13 Aligned_cols=50 Identities=18% Similarity=0.503 Sum_probs=34.5
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchhhh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKMEI 298 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~~~ 298 (574)
.++..|.+|...- ...+++ . |...||..|+...+. .+. ..||.|......
T Consensus 13 ~~~~~C~iC~~~~---~~p~~~--~-CgH~fC~~Ci~~~~~-----~~~--~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL---VEPVTL--P-CNHTLCKPCFQSTVE-----KAS--LCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC---SSCEEC--T-TSCEECHHHHCCCCC-----TTT--SBCTTTCCBCHH
T ss_pred CCCCCCccCCccc---CceeEc--C-CCCHHhHHHHHHHHh-----HCc--CCCCCCCcccCc
Confidence 4467899999753 233333 3 888999999986654 223 679999986543
No 168
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=54.85 E-value=15 Score=30.61 Aligned_cols=46 Identities=15% Similarity=0.403 Sum_probs=32.9
Q ss_pred cCCCHHHHHHHHHHH-HhC-CCCCH-HHHHHHHHHcCCChhhHHHhhcc
Q 008193 446 HRMPPNAVEKLRQVF-AEN-ELPSR-IVKENLSKELSLEPEKVNKWFKN 491 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F-~~~-~yPs~-~~r~~LA~~LgL~~~qV~vWFQN 491 (574)
.+||+++....-..+ ... .|++. ....++|+++|+++.+|..|..-
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 468998876554444 322 24443 46789999999999999999754
No 169
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=53.42 E-value=3 Score=35.43 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=20.9
Q ss_pred CcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 261 TCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 261 ~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.|...||..|+...+.. ...... -.||.|+..
T Consensus 60 ~C~H~Fh~~Ci~~wl~~-~~~~~~--~~CP~CR~~ 91 (114)
T 1v87_A 60 KCSHAFHLLCLLAMYCN-GNKDGS--LQCPSCKTI 91 (114)
T ss_dssp SSCCEECHHHHHHHHHH-TCCSSC--CBCTTTCCB
T ss_pred CCCCcccHHHHHHHHHc-ccCCCC--CcCCCCCCc
Confidence 38899999999876521 001112 579999854
No 170
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=52.09 E-value=14 Score=26.97 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=29.3
Q ss_pred CCC--HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcc
Q 008193 447 RMP--PNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKN 491 (574)
Q Consensus 447 r~t--~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQN 491 (574)
-++ +++...+...|.. .+ ...++|+.||++...|..|+..
T Consensus 13 ~l~~~~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp EECSHHHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHhcCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHh
Confidence 356 6666666666543 33 4668999999999999999853
No 171
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.03 E-value=7.1 Score=30.38 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=32.4
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchhh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKME 297 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~~ 297 (574)
.+...|.+|.... .+.+.. . |...||..|+...+.. . ..||.|+....
T Consensus 13 ~~~~~C~IC~~~~----~~~~~~-~-CgH~fC~~Ci~~~~~~------~--~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTC----VHPVSL-P-CKHVFCYLCVKGASWL------G--KRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBC----SSEEEE-T-TTEEEEHHHHHHCTTC------S--SBCSSSCCBCC
T ss_pred CCCCCCccCCccc----CCCEEc-c-CCCHHHHHHHHHHHHC------C--CcCcCcCchhC
Confidence 4557899998753 222333 3 8888999999865541 1 57999987653
No 172
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=50.80 E-value=8.3 Score=31.39 Aligned_cols=51 Identities=16% Similarity=0.395 Sum_probs=32.0
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
++..|.+|...-...+-.++-|. |...|+..|+.--+. .+. ..||.|+...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~--CGH~fC~~Cl~~~~~-----~~~--~~CP~CR~~~ 60 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCT--CGYQICRFCWHRIRT-----DEN--GLCPACRKPY 60 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSST--TSCCCCHHHHHHHTT-----SSC--SBCTTTCCBC
T ss_pred cCCcCCccCccCccccccccccC--CCCCcCHHHHHHHHh-----cCC--CCCCCCCCcc
Confidence 34679999985322222334453 877888888874433 123 7899998654
No 173
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=49.07 E-value=5.1 Score=39.49 Aligned_cols=46 Identities=24% Similarity=0.447 Sum_probs=32.2
Q ss_pred cccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccc
Q 008193 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCEC 294 (574)
Q Consensus 238 d~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~ 294 (574)
...|.+|..--. .=+.|. .|...||..|+.--+. .... --||.|..
T Consensus 180 i~~C~iC~~iv~----~g~~C~-~C~~~~H~~C~~~~~~--~~~~----~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLI----QGQSCE-TCGIRMHLPCVAKYFQ--SNAE----PRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCS----SCEECS-SSCCEECHHHHHHHTT--TCSS----CBCTTTCC
T ss_pred CCcCcchhhHHh----CCcccC-ccChHHHHHHHHHHHH--hCCC----CCCCCCCC
Confidence 467999998643 226798 5999999999975544 1221 35999963
No 174
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=49.04 E-value=16 Score=27.95 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=34.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+|+.|.++|..+ ...+ .-.++|..||+++..|..++++-+.
T Consensus 10 ~~L~~~e~~il~~~--~~g~----s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 10 PLLTKREREVFELL--VQDK----TTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCHHHHHHHHHH--TTTC----CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--HcCC----CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46999999999884 3333 4468999999999999999887655
No 175
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.03 E-value=2.6 Score=32.96 Aligned_cols=50 Identities=32% Similarity=0.731 Sum_probs=32.3
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
..+..|.+|..... ....++... |...||..|+...+.. . ..||.|+...
T Consensus 13 ~~~~~C~IC~~~~~-~~~~~~~~~--C~H~f~~~Ci~~~~~~------~--~~CP~Cr~~~ 62 (74)
T 2ep4_A 13 NLHELCAVCLEDFK-PRDELGICP--CKHAFHRKCLIKWLEV------R--KVCPLCNMPV 62 (74)
T ss_dssp CCSCBCSSSCCBCC-SSSCEEEET--TTEEEEHHHHHHHHHH------C--SBCTTTCCBC
T ss_pred CCCCCCcCCCcccC-CCCcEEEcC--CCCEecHHHHHHHHHc------C--CcCCCcCccc
Confidence 34568999998632 122333332 8889999999865541 1 3699998653
No 176
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=48.88 E-value=14 Score=28.74 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHH
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALK 498 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k 498 (574)
.+|+.+.++|...|.-..- ....-.++|..||++...|+.|...-+. +++
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~-kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALR-KLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHH-HHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH-HHH
Confidence 5899999999998852100 0123358999999999999998877776 444
No 177
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=48.80 E-value=15 Score=31.73 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
.+|+.|..+|. .|.. .| .-.++|..||++...|+.+.+.-|. ++|..
T Consensus 109 ~L~~~~r~v~~-~~~~-g~----s~~EIA~~lgis~~tV~~~~~ra~~-~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-GY----SYREIATILSKNLKSIDNTIQRIRK-KSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTT-TC----CHHHHHHHHTCCHHHHHHHHHHHHH-HHHHH
T ss_pred hCCHHHHHHHH-HHHc-CC----CHHHHHHHHCCCHHHHHHHHHHHHH-HHHHH
Confidence 58999999998 4432 23 4578999999999999999988887 44444
No 178
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=47.67 E-value=8.1 Score=30.18 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.+|+.+.++|..+| ..+ .-.++|..||+++..|+.++.+-+.
T Consensus 16 ~L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 16 TLSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HHCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 48999999998743 333 3358999999999999998877666
No 179
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=44.43 E-value=16 Score=31.60 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
.+|+.|.++|...|... -.-.++|..||+++..|+.|.+.-|. +++..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~-kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEK-ILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHH-HHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHH-HHHHH
Confidence 59999999999876544 23478999999999999999998887 44443
No 180
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.02 E-value=5.8 Score=30.73 Aligned_cols=50 Identities=24% Similarity=0.571 Sum_probs=32.6
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+...|.+|.... .+.+++ . |...||..|+...+.. ..+. -.||.|+...
T Consensus 18 ~~~~~C~IC~~~~---~~~~~~--~-CgH~fC~~Ci~~~~~~---~~~~--~~CP~Cr~~~ 67 (73)
T 2ysl_A 18 QEEVICPICLDIL---QKPVTI--D-CGHNFCLKCITQIGET---SCGF--FKCPLCKTSV 67 (73)
T ss_dssp CCCCBCTTTCSBC---SSEEEC--T-TCCEEEHHHHHHHCSS---SCSC--CCCSSSCCCC
T ss_pred ccCCEeccCCccc---CCeEEc--C-CCChhhHHHHHHHHHc---CCCC--CCCCCCCCcC
Confidence 3457899999863 233333 3 8888999999866541 1122 5799998643
No 181
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=43.94 E-value=12 Score=27.47 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.4
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 468999999999999999998765
No 182
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=43.92 E-value=14 Score=28.84 Aligned_cols=53 Identities=13% Similarity=0.326 Sum_probs=33.0
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+...|.+|...-. +.++ . . |...||..|+.-.+....... ...-.||.|+...
T Consensus 11 ~~~~C~IC~~~~~---~p~~-l-~-CgH~fC~~Ci~~~~~~~~~~~-~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLT---EPLS-L-D-CGHSLCRACITVSNKEAVTSM-GGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECS---SCCC-C-S-SSCCCCHHHHSCCCCCCSSSC-CCCCCCSSSCCCC
T ss_pred cCCCCcCCCcccC---CeeE-C-C-CCCHHHHHHHHHHHHhcccCC-CCCCcCCCCCCcC
Confidence 3567999987531 2333 2 3 888899999997665211111 1126799998654
No 183
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.51 E-value=14 Score=28.29 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.+|+.+.++|...|.-+.+- ...-.++|..||+++..|+.+...-+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 58999999999988432221 123367999999999999998876665
No 184
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=43.12 E-value=13 Score=27.48 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=21.7
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 578999999999999999998765
No 185
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=42.52 E-value=18 Score=29.40 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=34.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+|+.+.++|...|.. +. -.++|..||+++..|+.+..+-+.
T Consensus 28 ~~Lt~~e~~vl~l~~~g--~s----~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKG--YS----NQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp GGCCSHHHHHHHHHHTT--CC----TTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcC--CC----HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46999999999985433 32 247999999999999998887665
No 186
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=41.80 E-value=4.8 Score=36.68 Aligned_cols=49 Identities=22% Similarity=0.526 Sum_probs=33.1
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+...|.+|...- .+-+.+-. |...||..|+...+. .+. ..||.|....
T Consensus 52 ~~~~~C~IC~~~~----~~p~~~~~-CgH~fC~~Ci~~~~~-----~~~--~~CP~Cr~~~ 100 (165)
T 2ckl_B 52 HSELMCPICLDML----KNTMTTKE-CLHRFCADCIITALR-----SGN--KECPTCRKKL 100 (165)
T ss_dssp HHHHBCTTTSSBC----SSEEEETT-TCCEEEHHHHHHHHH-----TTC--CBCTTTCCBC
T ss_pred CCCCCCcccChHh----hCcCEeCC-CCChhHHHHHHHHHH-----hCc--CCCCCCCCcC
Confidence 3456899998763 22344432 889999999986654 122 5799998654
No 187
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=41.59 E-value=12 Score=30.27 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=35.3
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 445 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 445 r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
-..+|+.|.++|...| .. ..-.++|..||++...|+.+..+-+.
T Consensus 19 ~~~Lt~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 19 VNQLTPRERDILKLIA--QG----LPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp GGGSCHHHHHHHHHHT--TT----CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3569999999999843 22 35578999999999999998887665
No 188
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.48 E-value=15 Score=31.04 Aligned_cols=33 Identities=27% Similarity=0.727 Sum_probs=24.8
Q ss_pred CCccccCCCcCC-cccccccCCCCCCCCCCCCCCccccCccc
Q 008193 253 NDIVLCDGTCNC-AFHQKCLDPPLDTESIPPGDQGWFCKFCE 293 (574)
Q Consensus 253 g~lLlCDg~C~r-afH~~Cl~PPL~~~~iP~gde~W~C~~C~ 293 (574)
=.||+|. .|.. +-|..|..- . . ...+ |.|..|.
T Consensus 44 W~L~lC~-~Cgs~gtH~~Cs~l--~--~-~~~~--weC~~C~ 77 (85)
T 1weq_A 44 WRLILCA-TCGSHGTHRDCSSL--R--P-NSKK--WECNECL 77 (85)
T ss_dssp TBCEECS-SSCCCEECSGGGTC--C--T-TCSC--CCCTTTS
T ss_pred EEEEeCc-ccCCchhHHHHhCC--c--C-CCCC--EECCcCc
Confidence 4699999 5995 789999883 2 1 2234 9999997
No 189
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=41.33 E-value=14 Score=27.63 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=21.6
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999988765
No 190
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=39.78 E-value=16 Score=27.87 Aligned_cols=24 Identities=13% Similarity=0.405 Sum_probs=21.5
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999998765
No 191
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=39.73 E-value=9 Score=32.15 Aligned_cols=31 Identities=29% Similarity=0.742 Sum_probs=23.0
Q ss_pred ccccccccCCCCCCCCccccC-CCcCCcccccccC
Q 008193 239 IICAKCKLREAFPDNDIVLCD-GTCNCAFHQKCLD 272 (574)
Q Consensus 239 ~~C~vC~~~~~~~~g~lLlCD-g~C~rafH~~Cl~ 272 (574)
..|.+|+... .|-.|.|. +.|..+||..|..
T Consensus 18 l~C~iC~~~~---~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 18 LTCYLCKQKG---VGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCBTTTTBCC---SSCEEECSCTTTCCEEEHHHHH
T ss_pred CCCcCCCCCC---CcEeEecCCCCCCCcCcHHHHH
Confidence 5699998641 26777786 2599999999953
No 192
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=39.67 E-value=17 Score=33.59 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHh
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 499 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~ 499 (574)
.+++.|..+|...|... ..-.++|..||+++..|+.+...-|. ++|.
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~-~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALE-RLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHH-HHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHH-HHHH
Confidence 59999999999988432 34568999999999999999988887 5554
No 193
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=39.51 E-value=20 Score=28.59 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=39.7
Q ss_pred cCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCCChhhHHHhhcc
Q 008193 446 HRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFKN 491 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~LgL~~~qV~vWFQN 491 (574)
..++.+++..|..+|.. +.+++..+-..+-..+|++..+|..+|+.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 46899999999999964 56899999999999999999999988863
No 194
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=39.42 E-value=53 Score=28.90 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=35.8
Q ss_pred ccCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCCChhh--HHHhh
Q 008193 445 FHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEK--VNKWF 489 (574)
Q Consensus 445 r~r~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~LgL~~~q--V~vWF 489 (574)
+..||++|++.|..+|.. +.+.+..+-..+-+.||+.+.. +...+
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 367999999999999974 6789999999999999965544 44444
No 195
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=38.91 E-value=0.62 Score=43.02 Aligned_cols=29 Identities=10% Similarity=-0.047 Sum_probs=21.8
Q ss_pred ccCCCccCCCHHHHHHHHHHHHhCCCCCH
Q 008193 440 KIRRSFHRMPPNAVEKLRQVFAENELPSR 468 (574)
Q Consensus 440 ~~kr~r~r~t~~Q~~~Le~~F~~~~yPs~ 468 (574)
..+|+|+.|+..|+++|+..|..++||..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 45788899999999999999999999974
No 196
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=38.01 E-value=16 Score=28.64 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCChhhHHHhhccccc
Q 008193 470 VKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 470 ~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
...+||+.||++...|..|..+++.
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCC
Confidence 3578999999999999999998775
No 197
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=37.30 E-value=18 Score=27.42 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=21.6
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999998765
No 198
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=37.26 E-value=29 Score=29.87 Aligned_cols=48 Identities=6% Similarity=0.114 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhh
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKAR 500 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~ 500 (574)
.+|+.|.++|...|... ..-.++|..||+++..|+.+...-|. +++..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~-kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGD-LVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHH-HHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHH-HHHHH
Confidence 58999999999876443 23478999999999999999998887 44443
No 199
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=36.59 E-value=42 Score=28.49 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=33.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 493 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR 493 (574)
..++.++...+...+... + ...++|+.||++...|..|++..+
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHccc
Confidence 468888888777777543 3 357899999999999999997543
No 200
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=36.58 E-value=6.5 Score=34.85 Aligned_cols=44 Identities=18% Similarity=0.472 Sum_probs=29.2
Q ss_pred ccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 239 IICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 239 ~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
..|.+|.... .+.+... |...||..|+...+.. . -.||.|+...
T Consensus 54 ~~C~iC~~~~----~~~~~~~--CgH~fc~~Ci~~~~~~------~--~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYF----IEAVTLN--CAHSFCSYCINEWMKR------K--IECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBC----SSEEEET--TSCEEEHHHHHHHTTT------C--SBCTTTCCBC
T ss_pred CCCcccCccc----CCceECC--CCCCccHHHHHHHHHc------C--CcCCCCCCcC
Confidence 4699998753 2223332 8888999998865541 1 4599998653
No 201
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=36.58 E-value=32 Score=27.71 Aligned_cols=44 Identities=7% Similarity=0.097 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCCChhhHHHhhc
Q 008193 447 RMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFK 490 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~LgL~~~qV~vWFQ 490 (574)
.++++|+..|..+|.. +.|.+..+-..+-+.+|++..+|..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3789999999999975 5678888888888889999988887765
No 202
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=36.55 E-value=19 Score=26.77 Aligned_cols=24 Identities=4% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999988765
No 203
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=36.48 E-value=20 Score=27.36 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.4
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~~ 47 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDVQ 47 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999998754
No 204
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=36.33 E-value=19 Score=27.43 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.5
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDRN 49 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 578999999999999999988764
No 205
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=35.83 E-value=30 Score=25.49 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 451 NAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 451 ~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.|.++|...+.. +. -.++|..||+++..|+.+..+-+.
T Consensus 2 re~~vl~l~~~g--~s----~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 2 RERQVLKLIDEG--YT----NHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHHHHHTS--CC----SHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CC----HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456677663332 32 258999999999999998887665
No 206
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.56 E-value=8.9 Score=30.61 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=32.8
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+...|.+|.......+...+.. . |...||..|+...+.. - ... ..||.|+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-~-CgH~fC~~Ci~~~~~~--~-~~~--~~CP~Cr~~~ 66 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLL-H-CGHTICRQCLEKLLAS--S-ING--VRCPFCSKIT 66 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEEC-S-SSCEEEHHHHHHHHHH--C-SSC--BCCTTTCCCB
T ss_pred cCCCCCccCCccccccCCCeEEC-C-CCChhhHHHHHHHHHc--C-CCC--cCCCCCCCcc
Confidence 34567999987642111113333 3 8899999999865541 1 112 6799998643
No 207
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.01 E-value=24 Score=30.18 Aligned_cols=45 Identities=18% Similarity=0.465 Sum_probs=28.6
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+...|.+|...- .+.+++.. |...|+..|+.-.+. ..||.|....
T Consensus 21 ~~~~C~IC~~~~---~~pv~~~~--CgH~fC~~Ci~~~~~----------~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNIL---REPVCLGG--CEHIFCSNCVSDCIG----------TGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCC---SSCBCCCS--SSCCBCTTTGGGGTT----------TBCSSSCCBC
T ss_pred hCCCCCCCChHh---hCccEeCC--CCCHHHHHHHHHHhc----------CCCcCCCCcC
Confidence 356799998753 23444432 777777778764332 3599998653
No 208
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.75 E-value=25 Score=31.47 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHh
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 499 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~ 499 (574)
.+|+.+.++|...|... + .-.++|..||+++..|+.+...-|. ++|.
T Consensus 140 ~L~~~~r~vl~l~~~~g-~----s~~EIA~~lgis~~tV~~~l~ra~~-~Lr~ 186 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG-L----SYEEIAAIMDCPVGTVRSRIFRARE-AIDN 186 (194)
T ss_dssp HSCHHHHHHHHHHHTTC-C----CHHHHHHHTTSCHHHHHHHHHHHHH-HHHH
T ss_pred hCCHHHHHHhHHHHHcC-C----CHHHHHHHHCCCHHHHHHHHHHHHH-HHHH
Confidence 58999999999876543 2 2368999999999999999988887 4444
No 209
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=34.61 E-value=22 Score=26.79 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.5
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~~ 52 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQRN 52 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCC
Confidence 578999999999999999998764
No 210
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.22 E-value=6.1 Score=29.99 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=31.8
Q ss_pred cccccccccccCCCCC--CCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 236 HEHIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~--~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.+...|.+|....... .+.++..- .|...||..|+...+.. . -.||.|+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~------~--~~CP~Cr~~ 65 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN------A--NTCPTCRKK 65 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH------C--SSCTTTCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc------C--CCCCCCCCc
Confidence 3457799998753211 12333344 38899999999865431 1 359999754
No 211
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=34.19 E-value=14 Score=31.37 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=25.1
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchhhh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKMEI 298 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~~~ 298 (574)
..+.|.+|+--+....|+ .-+..+-+-++. .+|+ + |.||.|-.....
T Consensus 34 ~~y~C~vCGyvYD~~~Gd----------p~~gI~pGT~fe--dlPd-d--W~CPvCga~K~~ 80 (87)
T 1s24_A 34 LKWICITCGHIYDEALGD----------EAEGFTPGTRFE--DIPD-D--WCCPDCGATKED 80 (87)
T ss_dssp CEEEETTTTEEEETTSCC----------TTTTCCSCCCGG--GCCT-T--CCCSSSCCCGGG
T ss_pred ceEECCCCCeEecCCcCC----------cccCcCCCCChh--HCCC-C--CCCCCCCCCHHH
Confidence 357788887542111111 112333333444 6775 3 999999875443
No 212
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=33.90 E-value=18 Score=29.40 Aligned_cols=16 Identities=13% Similarity=0.588 Sum_probs=12.0
Q ss_pred CCCCCCCccccCcccchhh
Q 008193 279 SIPPGDQGWFCKFCECKME 297 (574)
Q Consensus 279 ~iP~gde~W~C~~C~~k~~ 297 (574)
.+|+ + |.||.|-....
T Consensus 36 ~lPd-d--w~CP~Cga~K~ 51 (70)
T 1dx8_A 36 DLSD-S--FMCPACRSPKN 51 (70)
T ss_dssp GSCT-T--CBCTTTCCBGG
T ss_pred hCCC-C--CcCCCCCCCHH
Confidence 5775 4 99999987653
No 213
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.77 E-value=21 Score=26.05 Aligned_cols=45 Identities=18% Similarity=0.513 Sum_probs=28.7
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcc
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFC 292 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C 292 (574)
+...|.+|..... +.++ - . |...||..|+...+. .+. .. ..||.|
T Consensus 14 ~~~~C~IC~~~~~---~p~~-~-~-CgH~fC~~Ci~~~~~--~~~-~~--~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK---EPVI-I-E-CGHNFCKACITRWWE--DLE-RD--FPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS---SCCC-C-S-SCCCCCHHHHHHHTT--SSC-CS--CCCSCC
T ss_pred cCCCCccCCcccC---ccEe-C-C-CCCccCHHHHHHHHH--hcC-CC--CCCCCC
Confidence 4568999998632 2233 2 3 888899999986644 111 22 568887
No 214
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.72 E-value=7.3 Score=30.70 Aligned_cols=52 Identities=19% Similarity=0.487 Sum_probs=31.5
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+...|.+|..... ..+ .. . |...||..|+...+.......+. ..||.|....
T Consensus 18 ~~~~C~IC~~~~~---~p~-~~-~-CgH~fC~~Ci~~~~~~~~~~~~~--~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELLK---EPV-SA-D-CNHSFCRACITLNYESNRNTDGK--GNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCCS---SCE-EC-T-TSCCBCHHHHHHHHHHSBCTTSC--BCCTTTCCCC
T ss_pred cCCCCcCCChhhC---cce-eC-C-CCCHHHHHHHHHHHHhccCCCCC--CCCCCCCCcC
Confidence 4568999987631 223 23 2 88889999987544310101122 7899998653
No 215
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=33.61 E-value=23 Score=27.10 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=21.3
Q ss_pred HHHHHHHcCCChhhHHHhhcccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNAR 493 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR 493 (574)
..+||+.+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999999887
No 216
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.34 E-value=4.7 Score=31.82 Aligned_cols=52 Identities=23% Similarity=0.531 Sum_probs=31.2
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+...|.+|..... ..+++ . |...||..|+...+.......+. ..||.|....
T Consensus 18 ~~~~C~IC~~~~~---~p~~~--~-CgH~fC~~Ci~~~~~~~~~~~~~--~~CP~Cr~~~ 69 (85)
T 2ecv_A 18 EEVTCPICLELLT---QPLSL--D-CGHSFCQACLTANHKKSMLDKGE--SSCPVCRISY 69 (85)
T ss_dssp CCCCCTTTCSCCS---SCBCC--S-SSCCBCTTHHHHHHHHHHHTTSC--CCCTTTCCSS
T ss_pred CCCCCCCCCcccC---CceeC--C-CCCHHHHHHHHHHHHHhhcCCCC--CcCCCCCCcc
Confidence 4568999998631 23332 3 88889999987544310001122 5799998654
No 217
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=33.01 E-value=64 Score=26.72 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=39.0
Q ss_pred ccCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcC--CChhhHHHhhc
Q 008193 445 FHRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELS--LEPEKVNKWFK 490 (574)
Q Consensus 445 r~r~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~Lg--L~~~qV~vWFQ 490 (574)
...++.+|++.|..+|.. +.|.+..+-..+-+.|| ++..+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 357999999999999975 57899999999999988 67788888875
No 218
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=32.43 E-value=4.6 Score=33.93 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=33.8
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+...|.+|...- .+-+.|- .|...||..|+...+.. .. ..||.|+...
T Consensus 21 ~~~~C~IC~~~~----~~p~~~~-~CgH~FC~~Ci~~~~~~-----~~--~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKL----RDARLCP-HCSKLCCFSCIRRWLTE-----QR--AQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBC----SSEEECT-TTCCEEEHHHHHHHHHH-----TC--SBCTTTCCBC
T ss_pred CCCCCccCCccc----cCccccC-CCCChhhHHHHHHHHHH-----Cc--CCCCCCCCcC
Confidence 456799999863 3445556 49999999999866541 11 4699998764
No 219
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=32.20 E-value=6.5 Score=30.06 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=30.0
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
....|.+|.... .+.. ..- .|...||..|+...+.. . ..||.|+...
T Consensus 4 ~~~~C~IC~~~~---~~~~-~~~-~C~H~fc~~Ci~~~~~~------~--~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDP---SNYS-MAL-PCLHAFCYVCITRWIRQ------N--PTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCC---CSCE-EET-TTTEEESTTHHHHHHHH------S--CSTTTTCCCC
T ss_pred CCCCCeeCCccc---cCCc-Eec-CCCCeeHHHHHHHHHhC------c--CcCcCCChhh
Confidence 356799998763 1222 233 38888999998764431 1 4699998543
No 220
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=32.20 E-value=43 Score=25.96 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.|+.+.+..|.....- ...+||+.+|++...|..|-++++.
T Consensus 10 ~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 5888888888866543 3578999999999999999998775
No 221
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=32.16 E-value=28 Score=31.05 Aligned_cols=49 Identities=10% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCCccCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHH----Hc--CCChhhHHHhhcccc
Q 008193 442 RRSFHRMPPNAVEKLRQVF-AENELPSRIVKENLSK----EL--SLEPEKVNKWFKNAR 493 (574)
Q Consensus 442 kr~r~r~t~~Q~~~Le~~F-~~~~yPs~~~r~~LA~----~L--gL~~~qV~vWFQNrR 493 (574)
+++|.++|-+|...|-.++ ..++-.+ ..+||+ ++ |++...|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 4567899999999999999 6777664 345777 78 778888999987643
No 222
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.09 E-value=8 Score=30.81 Aligned_cols=47 Identities=19% Similarity=0.406 Sum_probs=31.2
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.....|.+|.... .+.++ - .|...||..|+...+. . . ..||.|....
T Consensus 13 ~~~~~C~IC~~~~---~~p~~--~-~CgH~fC~~Ci~~~~~--~----~--~~CP~Cr~~~ 59 (81)
T 2csy_A 13 EIPFRCFICRQAF---QNPVV--T-KCRHYFCESCALEHFR--A----T--PRCYICDQPT 59 (81)
T ss_dssp CCCSBCSSSCSBC---CSEEE--C-TTSCEEEHHHHHHHHH--H----C--SBCSSSCCBC
T ss_pred CCCCCCcCCCchh---cCeeE--c-cCCCHhHHHHHHHHHH--C----C--CcCCCcCccc
Confidence 3456899998763 12333 2 3888899999876543 1 2 4699998654
No 223
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=31.72 E-value=25 Score=27.43 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.7
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 468999999999999999998876
No 224
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=31.70 E-value=46 Score=27.39 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=34.2
Q ss_pred CccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 444 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 444 ~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
....||+.+.++|...+ ..+ .-.++|..||+++..|+...++-+.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34679999999999776 333 4678999999999999987766544
No 225
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=31.70 E-value=38 Score=27.51 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCCChhhHHHhhc
Q 008193 448 MPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSLEPEKVNKWFK 490 (574)
Q Consensus 448 ~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~LgL~~~qV~vWFQ 490 (574)
++++|++.|..+|.. +.|.+..+-..+-+.+|++..+|..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 788999999999954 5678998888888889999999987775
No 226
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.62 E-value=20 Score=29.03 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.+|+.|.++|...|.-..- ....-.++|..||++...|+.|...-+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5899999999998852100 1123468999999999999998877666
No 227
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=30.99 E-value=83 Score=24.10 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=36.4
Q ss_pred cCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcC--CChhh---HHHhhc
Q 008193 446 HRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELS--LEPEK---VNKWFK 490 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~Lg--L~~~q---V~vWFQ 490 (574)
..++++|+..|..+|.. +.+.+..+-..+-+.+| ++..+ |..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46899999999999964 56899999999989998 55667 777775
No 228
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=30.99 E-value=26 Score=28.35 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=21.6
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.||++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 577999999999999999998765
No 229
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.86 E-value=8.8 Score=32.15 Aligned_cols=48 Identities=19% Similarity=0.448 Sum_probs=30.6
Q ss_pred cccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 238 HIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 238 d~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
...|.+|.... .+.+++ . |...||..|+...+.. ..+. ..||.|....
T Consensus 21 ~~~C~IC~~~~---~~p~~~--~-CgH~fC~~Ci~~~~~~---~~~~--~~CP~Cr~~~ 68 (112)
T 1jm7_A 21 ILECPICLELI---KEPVST--K-CDHIFCKFCMLKLLNQ---KKGP--SQCPLCKNDI 68 (112)
T ss_dssp HTSCSSSCCCC---SSCCBC--T-TSCCCCSHHHHHHHHS---SSSS--CCCTTTSCCC
T ss_pred CCCCcccChhh---cCeEEC--C-CCCHHHHHHHHHHHHh---CCCC--CCCcCCCCcC
Confidence 45799998753 122332 3 8888999998765541 1122 6799998654
No 230
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.19 E-value=7.3 Score=29.42 Aligned_cols=46 Identities=26% Similarity=0.603 Sum_probs=28.8
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcc
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFC 292 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C 292 (574)
.+...|.+|.... .+.+++ . |...||..|+...+.. .... ..||.|
T Consensus 18 ~~~~~C~IC~~~~---~~p~~~--~-CgH~fC~~Ci~~~~~~---~~~~--~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDIL---QKPVTI--D-CGHNFCLKCITQIGET---SCGF--FKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBC---SSCEEC--T-TSSEECHHHHHHHHHH---CSSC--CCCSCC
T ss_pred ccCCCCCcCCchh---CCeEEe--C-CCCcchHHHHHHHHHc---CCCC--CcCcCC
Confidence 3457899998753 233443 3 8888999998765431 1112 468877
No 231
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.44 E-value=14 Score=28.28 Aligned_cols=45 Identities=29% Similarity=0.610 Sum_probs=30.6
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+...|.+|..... . +.- .|...||..|+...+. .. ..||.|+...
T Consensus 14 ~~~~C~IC~~~~~---~--~~~--~CgH~fc~~Ci~~~~~------~~--~~CP~Cr~~~ 58 (70)
T 2ecn_A 14 DEEECCICMDGRA---D--LIL--PCAHSFCQKCIDKWSD------RH--RNCPICRLQM 58 (70)
T ss_dssp CCCCCSSSCCSCC---S--EEE--TTTEEECHHHHHHSSC------CC--SSCHHHHHCT
T ss_pred CCCCCeeCCcCcc---C--ccc--CCCCcccHHHHHHHHH------Cc--CcCCCcCCcc
Confidence 4578999988631 2 222 2888899999987554 12 6799997543
No 232
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=29.38 E-value=16 Score=28.58 Aligned_cols=49 Identities=18% Similarity=0.522 Sum_probs=31.4
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccch
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECK 295 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k 295 (574)
.+...|.+|...- .+.++ -. .|...||..|+...+.. . +. ..||.|+..
T Consensus 13 ~~~~~C~IC~~~~---~~p~~-~~-~CgH~fC~~Ci~~~~~~--~--~~--~~CP~Cr~~ 61 (74)
T 2yur_A 13 PDELLCLICKDIM---TDAVV-IP-CCGNSYCDECIRTALLE--S--DE--HTCPTCHQN 61 (74)
T ss_dssp CGGGSCSSSCCCC---TTCEE-CS-SSCCEECTTHHHHHHHH--S--SS--SCCSSSCCS
T ss_pred CCCCCCcCCChHH---hCCeE-cC-CCCCHHHHHHHHHHHHh--c--CC--CcCCCCCCc
Confidence 3457899998753 23333 33 28888999998766541 1 11 469999864
No 233
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.16 E-value=34 Score=26.12 Aligned_cols=15 Identities=33% Similarity=1.059 Sum_probs=11.3
Q ss_pred CCCCCCCccccCcccchh
Q 008193 279 SIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 279 ~iP~gde~W~C~~C~~k~ 296 (574)
.+|+ + |.||.|-...
T Consensus 32 ~lP~-d--w~CP~Cg~~K 46 (52)
T 1e8j_A 32 DLPD-D--WACPVCGASK 46 (52)
T ss_dssp SSCT-T--CCCSSSCCCT
T ss_pred HCCC-C--CcCCCCCCcH
Confidence 5775 3 9999998643
No 234
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=28.64 E-value=30 Score=27.43 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=21.4
Q ss_pred HHHHHHHcCCChhhHHHhhcccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNAR 493 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR 493 (574)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999999886
No 235
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.46 E-value=78 Score=26.79 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=33.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC--CChhhHHHhhccccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELS--LEPEKVNKWFKNARY 494 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~Lg--L~~~qV~vWFQNrR~ 494 (574)
..+++++...+... ..++..+. .+||.+|| ++...|..|+.....
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 35899998888777 55665555 56889999 789999999976544
No 236
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=28.20 E-value=32 Score=26.94 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=21.4
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999998654
No 237
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=28.16 E-value=31 Score=26.67 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.7
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999998765
No 238
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=27.58 E-value=33 Score=26.50 Aligned_cols=24 Identities=4% Similarity=0.183 Sum_probs=21.5
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~~ 41 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSETA 41 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 568999999999999999998764
No 239
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=27.30 E-value=43 Score=31.78 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=35.5
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 445 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 445 r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
...||+.+.++|.-.+. .+ .-.++|..||+++..|+++.+|-+.
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARA 216 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35799999999987542 22 3478999999999999999887766
No 240
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=26.71 E-value=7.6 Score=33.58 Aligned_cols=47 Identities=21% Similarity=0.472 Sum_probs=31.0
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+...|.+|...-. ..+++ . |...||..|+...+. ... ..||.|+...
T Consensus 51 ~~~~C~IC~~~~~---~p~~~--~-CgH~fC~~Ci~~~~~-----~~~--~~CP~Cr~~~ 97 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITT--V-CQHNVCKDCLDRSFR-----AQV--FSCPACRYDL 97 (124)
T ss_dssp HHTBCTTTSSBCS---SEEEC--T-TSCEEEHHHHHHHHH-----TTC--CBCTTTCCBC
T ss_pred cCCCCCcCChHHc---CcEEe--e-CCCcccHHHHHHHHh-----HCc--CCCCCCCccC
Confidence 3467999987531 23332 3 888899999876543 111 4799998654
No 241
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=26.60 E-value=51 Score=28.32 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.++++++..|.....- ...+||..||++...|..|-++++.
T Consensus 70 ~~~~~~l~~~R~~~gl-------sq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp TCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCCHHHHHHHHHHcCC-------CHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 4788888888765532 3568999999999999999998775
No 242
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=26.55 E-value=34 Score=26.60 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.4
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 30 q~elA~~~gis~~~is~~e~g~~~ 53 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAERR 53 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCC
Confidence 468999999999999999998765
No 243
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.94 E-value=18 Score=28.12 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=30.8
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+...|.+|...- .+.+ .... |...||..|+...+.. . -.||.|+...
T Consensus 13 ~~~~~C~IC~~~~---~~p~-~~~~-CgH~fC~~Ci~~~~~~------~--~~CP~Cr~~~ 60 (72)
T 2djb_A 13 TPYILCSICKGYL---IDAT-TITE-CLHTFCKSCIVRHFYY------S--NRCPKCNIVV 60 (72)
T ss_dssp CGGGSCTTTSSCC---SSCE-ECSS-SCCEECHHHHHHHHHH------C--SSCTTTCCCC
T ss_pred CCCCCCCCCChHH---HCcC-EECC-CCCHHHHHHHHHHHHc------C--CcCCCcCccc
Confidence 3457899998753 1233 3332 8888999998754431 1 3599998654
No 244
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.74 E-value=77 Score=26.02 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred CccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhc
Q 008193 444 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFK 490 (574)
Q Consensus 444 ~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQ 490 (574)
+...++.++...+-..+.... ...++|+.||++...|..|+.
T Consensus 14 m~~~~s~~~r~~i~~~~~~g~-----s~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 14 NGRPLPNNIRLKIVEMAADGI-----RPCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
No 245
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=25.72 E-value=4.2 Score=31.26 Aligned_cols=52 Identities=19% Similarity=0.463 Sum_probs=32.7
Q ss_pred cccccccccccCCCCC--CCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~--~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+...|.+|......+ .+.++..- .|.-.||..|+...+.. . -.||.|+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~------~--~~CP~Cr~~~ 61 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN------A--NTCPTCRKKI 61 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH------C--SBCTTTCCBC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc------C--CCCCCCCCcc
Confidence 3457899998752111 13333444 39999999999865431 1 3699998653
No 246
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.61 E-value=40 Score=27.59 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccc
Q 008193 453 VEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNA 492 (574)
Q Consensus 453 ~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNr 492 (574)
++.+..+...+..-..-.-.+||..+||+++.+...|+-.
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444444432224467789999999999999888764
No 247
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=25.54 E-value=31 Score=30.70 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHh
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 499 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~ 499 (574)
.+|+.+.++|...|...-- -.++|..||+++..|+.|.+.-|. ++|.
T Consensus 135 ~L~~~~r~vl~l~~~~g~s-----~~eIA~~lgis~~tV~~~l~ra~~-~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDLT-----HRELAAETGLPLGTIKSRIRLALD-RLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHHSCCS-----SCCSTTTCCCCCHHHHHHHHHHHH-HHHH
T ss_pred hCCHHHHHHHHHHHHcCCC-----HHHHHHHHCcCHHHHHHHHHHHHH-HHHH
Confidence 4899999999986644321 146999999999999999988887 4443
No 248
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.51 E-value=1.2e+02 Score=26.21 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=35.0
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc--------C--CChhhHHHhhccccc
Q 008193 445 FHRMPPNAVEKLRQVFAENELPSRIVKENLSKEL--------S--LEPEKVNKWFKNARY 494 (574)
Q Consensus 445 r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~L--------g--L~~~qV~vWFQNrR~ 494 (574)
...+++++...|...+.+++..+.. +|+..| | ++...|..|+.....
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~---~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAW---EIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHH---HHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHH---HHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 3468999999999999988877654 355555 6 788999999876554
No 249
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=25.49 E-value=34 Score=26.06 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCChhhHHHhh
Q 008193 470 VKENLSKELSLEPEKVNKWF 489 (574)
Q Consensus 470 ~r~~LA~~LgL~~~qV~vWF 489 (574)
...+||+.||++..-|..|+
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 35789999999999999999
No 250
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=25.47 E-value=66 Score=28.70 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=36.9
Q ss_pred cCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCChhhHHHhhccc
Q 008193 446 HRMPPNAVEKLRQVFAE----NELPSRIVKENLSKELSLEPEKVNKWFKNA 492 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~----~~yPs~~~r~~LA~~LgL~~~qV~vWFQNr 492 (574)
..+|..+.-.|-..+.. +++|+.. +||+.+|+++.+|..+.++=
T Consensus 28 LgLs~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L 75 (135)
T 2v79_A 28 LGLNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMF 75 (135)
T ss_dssp HTCCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHH
Confidence 46899998888887774 7888885 69999999999999888753
No 251
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=25.30 E-value=35 Score=27.37 Aligned_cols=24 Identities=4% Similarity=0.293 Sum_probs=21.8
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~~ 47 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKAA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 578999999999999999998764
No 252
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=25.24 E-value=55 Score=27.75 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHh
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKA 499 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~ 499 (574)
.+|+.|..+|...|..+.+ ....-.++|..||++...|+.+....+. ++|.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlk-kLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALR-KLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHH-HHHH
Confidence 5899999999998864321 1234578999999999999998776666 4443
No 253
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.21 E-value=79 Score=27.92 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred CccCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 444 SFHRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 444 ~r~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
+...++.++...+-..+.... ...++|+.||++...|..|++..+.
T Consensus 22 ~~~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~r~~~ 67 (159)
T 2k27_A 22 NGRPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp SSCSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred CCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHh
No 254
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=24.64 E-value=40 Score=26.15 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCChhhHHHhhccccc
Q 008193 470 VKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 470 ~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
...+||..+|++...|..|..+++.
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~~~ 50 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNSRN 50 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCCC
Confidence 3568999999999999999998764
No 255
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=24.62 E-value=38 Score=26.85 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=21.5
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~~ 56 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGINA 56 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999998764
No 256
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=24.59 E-value=87 Score=23.78 Aligned_cols=45 Identities=9% Similarity=0.160 Sum_probs=35.9
Q ss_pred cCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcC--CChhhHHHhhc
Q 008193 446 HRMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELS--LEPEKVNKWFK 490 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~Lg--L~~~qV~vWFQ 490 (574)
..|+++++..|..+|.. +.+.+..+-..+-+.+| ++..+|..+|+
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 46899999999999964 45688888888888888 56677877775
No 257
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.22 E-value=70 Score=23.61 Aligned_cols=44 Identities=16% Similarity=0.566 Sum_probs=26.6
Q ss_pred cccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+...|.+|..... +-.++ .|...|+..|+.. .. ..||.|+...
T Consensus 4 ~~~~~C~IC~~~~~--~p~~l----~CgH~fC~~Ci~~---------~~--~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAK--CPKLL----PCLHTLCSGCLEA---------SG--MQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCB--CCSCS----TTSCCSBTTTCSS---------SS--SSCSSCCSSS
T ss_pred ccCCCceEeCCccC--CeEEc----CCCCcccHHHHcc---------CC--CCCCcCCcEe
Confidence 34567999987532 22233 2666677777653 11 5699998643
No 258
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=24.07 E-value=40 Score=27.77 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCChhhHHHhhccccc
Q 008193 470 VKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 470 ~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
...+||+.+|++...|..|..+++.
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~~ 63 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNENV 63 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCc
Confidence 4678999999999999999998764
No 259
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.01 E-value=13 Score=28.29 Aligned_cols=47 Identities=21% Similarity=0.511 Sum_probs=30.9
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+...|.+|...-. +.++ -. |...||..|+...+. ... ..||.|....
T Consensus 14 ~~~~C~IC~~~~~---~p~~--~~-CgH~fC~~Ci~~~~~-----~~~--~~CP~Cr~~~ 60 (66)
T 2ecy_A 14 DKYKCEKCHLVLC---SPKQ--TE-CGHRFCESCMAALLS-----SSS--PKCTACQESI 60 (66)
T ss_dssp CCEECTTTCCEES---SCCC--CS-SSCCCCHHHHHHHHT-----TSS--CCCTTTCCCC
T ss_pred cCCCCCCCChHhc---CeeE--CC-CCCHHHHHHHHHHHH-----hCc--CCCCCCCcCC
Confidence 4577999987532 2233 23 888899999986653 122 5699998653
No 260
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=24.01 E-value=73 Score=24.38 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcC-CChhhHHHhhc
Q 008193 447 RMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELS-LEPEKVNKWFK 490 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~Lg-L~~~qV~vWFQ 490 (574)
.++++++..|..+|.. +.+.+..+-..+-..+| ++..+|..+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5889999999999954 56788888888888887 77777887775
No 261
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=23.80 E-value=26 Score=24.39 Aligned_cols=12 Identities=42% Similarity=1.129 Sum_probs=9.7
Q ss_pred CCCCccccCcccch
Q 008193 282 PGDQGWFCKFCECK 295 (574)
Q Consensus 282 ~gde~W~C~~C~~k 295 (574)
+|+ |.|..|...
T Consensus 16 egd--wcchkcvpe 27 (36)
T 4b2u_A 16 EGD--WCCHKCVPE 27 (36)
T ss_dssp GCC--SSSSEEEEE
T ss_pred ccC--eeeeccccc
Confidence 577 999999864
No 262
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=23.67 E-value=43 Score=26.95 Aligned_cols=24 Identities=4% Similarity=0.045 Sum_probs=21.8
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 578999999999999999999775
No 263
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=23.50 E-value=53 Score=24.44 Aligned_cols=43 Identities=5% Similarity=0.104 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCC--ChhhHHHhhc
Q 008193 448 MPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSL--EPEKVNKWFK 490 (574)
Q Consensus 448 ~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~LgL--~~~qV~vWFQ 490 (574)
+|++++..|..+|.. +.+.+..+-..+-+.+|+ +..+|..+|+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 578889999999854 557888888888888885 5556776665
No 264
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=23.43 E-value=44 Score=26.18 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=20.7
Q ss_pred HHHHHHHcCCChhhHHHhhcc-ccc
Q 008193 471 KENLSKELSLEPEKVNKWFKN-ARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQN-rR~ 494 (574)
..+||+.+|++...|..|..+ ++.
T Consensus 26 q~elA~~~gis~~~is~~E~G~~~~ 50 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERNLQTN 50 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 467999999999999999998 443
No 265
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.33 E-value=30 Score=31.95 Aligned_cols=54 Identities=20% Similarity=0.459 Sum_probs=34.1
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchhhh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKMEI 298 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~~~ 298 (574)
+...|..|...-..-.+.=..|.. |..-+-..|-.- ..+.. .|.|..|...+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~-C~~~VC~~C~~~-----~~~~~--~W~C~vC~k~rel 120 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLE-CSLFVCKSCSHA-----HPEEQ--GWLCDPCHLARVV 120 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTT-TCCEECGGGEEC-----CSSSS--SCEEHHHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCC-CCchhhcccccc-----cCCCC--cEeeHHHHHHHHH
Confidence 356899998863223344456764 887777777631 11233 4999999877653
No 266
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=23.27 E-value=31 Score=23.40 Aligned_cols=19 Identities=42% Similarity=0.915 Sum_probs=12.7
Q ss_pred ccccCCCCCCCCCCCCCCccccCcccc
Q 008193 268 QKCLDPPLDTESIPPGDQGWFCKFCEC 294 (574)
Q Consensus 268 ~~Cl~PPL~~~~iP~gde~W~C~~C~~ 294 (574)
-+|.+|. ..|+ |.|-.|+.
T Consensus 8 gfcpdpe------kmgd--wccgrcir 26 (32)
T 4b2v_A 8 GFCPDPE------KMGD--WCCGRCIR 26 (32)
T ss_dssp CBCCCTT------TTCC--CCSSEEET
T ss_pred CcCCChH------Hhcc--hhhhHHHH
Confidence 3566653 2377 99999974
No 267
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=22.80 E-value=1.2e+02 Score=25.55 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=36.7
Q ss_pred cCCCHHHHHHHHHHHHh------CCCCCHHHHHHHHHHcC--CChhhHHHhhc
Q 008193 446 HRMPPNAVEKLRQVFAE------NELPSRIVKENLSKELS--LEPEKVNKWFK 490 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~------~~yPs~~~r~~LA~~Lg--L~~~qV~vWFQ 490 (574)
..|+++++..|..+|.. +.+.+..+-..+-..+| ++..+|..+|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 56899999999999964 56888888888888888 56777887775
No 268
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=22.57 E-value=43 Score=26.65 Aligned_cols=24 Identities=8% Similarity=0.322 Sum_probs=21.6
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.+|++...|..|..+++.
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~~ 52 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRAI 52 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999998774
No 269
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=22.02 E-value=16 Score=30.69 Aligned_cols=47 Identities=23% Similarity=0.555 Sum_probs=31.2
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+...|.+|...- .+-+.... |...||..|+...+.. . -.||.|....
T Consensus 14 ~~~~C~IC~~~~----~~p~~~~~-CgH~fC~~Ci~~~~~~------~--~~CP~Cr~~~ 60 (108)
T 2ckl_A 14 PHLMCVLCGGYF----IDATTIIE-CLHSFCKTCIVRYLET------S--KYCPICDVQV 60 (108)
T ss_dssp GGTBCTTTSSBC----SSEEEETT-TCCEEEHHHHHHHHTS------C--SBCTTTCCBS
T ss_pred CcCCCccCChHH----hCcCEeCC-CCChhhHHHHHHHHHh------C--CcCcCCCccc
Confidence 356799998753 22333332 8888999998865541 1 4699998654
No 270
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=21.87 E-value=4.5 Score=30.27 Aligned_cols=50 Identities=20% Similarity=0.481 Sum_probs=31.0
Q ss_pred cccccccccCCCCC--CCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 238 HIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 238 d~~C~vC~~~~~~~--~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
...|.+|......+ .+..+..- .|.-.||..|+...+.. . ..||.|+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~------~--~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN------A--NTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH------C--SBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc------C--CCCCCCCccC
Confidence 46799998752110 12333334 38899999999865431 1 4699998654
No 271
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=21.81 E-value=35 Score=32.57 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=23.8
Q ss_pred CcCCcccccccCCCCCCCCCCCCCC-ccccCcccch----hhhh-hhhhccCCceec
Q 008193 261 TCNCAFHQKCLDPPLDTESIPPGDQ-GWFCKFCECK----MEII-ESMNAHIGTSFS 311 (574)
Q Consensus 261 ~C~rafH~~Cl~PPL~~~~iP~gde-~W~C~~C~~k----~~~~-~~~n~~~g~~f~ 311 (574)
.|+|.|-..+..-|+...++|.... ..|||.|..- .... ..=.+.+|+.|.
T Consensus 108 ~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~~~~~iDGAyFGtsFp 164 (182)
T 1qf8_A 108 YCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFP 164 (182)
T ss_dssp BCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSSHH
T ss_pred CCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcccccccccceecCchH
Confidence 3555443222222233225554322 5999999641 1111 122356676665
No 272
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=21.70 E-value=50 Score=29.19 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccccHHHHhhh
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARYLALKARK 501 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~~~~k~~~ 501 (574)
.+|+.|.++|...| ...-.-.++|..||+++..|+.+...-|. ++|..-
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~-~Lr~~l 141 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALA-EIEKQT 141 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHH-HHHTTS
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHH-HHHHHH
Confidence 58888888887543 33334578999999999999999988887 555543
No 273
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=21.59 E-value=6.1 Score=33.80 Aligned_cols=52 Identities=19% Similarity=0.459 Sum_probs=33.6
Q ss_pred cccccccccccCCCCC--CCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 236 HEHIICAKCKLREAFP--DNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 236 ~ed~~C~vC~~~~~~~--~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
.+...|.+|....... .+.++..-. |...||..|+.+.+.. . ..||.|+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~------~--~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKN------A--NTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHH------C--SBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHc------C--CCCCCCCCcC
Confidence 4567799998742110 122323343 9999999999987651 1 5799998654
No 274
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=21.55 E-value=75 Score=27.62 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=32.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhcccc
Q 008193 446 HRMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNAR 493 (574)
Q Consensus 446 ~r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR 493 (574)
..|+.++...+-..+.. .+ ...++|+.||++...|..|+..-+
T Consensus 31 ~~~s~e~r~~iv~~~~~-G~----s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-GV----RPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35888887777777753 33 356799999999999999997543
No 275
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=21.49 E-value=20 Score=33.08 Aligned_cols=43 Identities=5% Similarity=0.052 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCChhhHHHhhccccc
Q 008193 447 RMPPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~~~yPs~~~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
.+++.+..+|...|.. .-.-.++|..||+++..|+.++..-|.
T Consensus 198 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 198 ELDERERLIVYLRYYK-----DQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp ------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhc-----CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4888888888876643 345678999999999999999887665
No 276
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=21.31 E-value=55 Score=30.70 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCChhhHHHhhccccc
Q 008193 470 VKENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 470 ~r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
...+||+.+|++...|..|..+++.
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~~ 56 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGINA 56 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4578999999999999999988654
No 277
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=21.29 E-value=30 Score=33.85 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=24.9
Q ss_pred CcCCcccccccCCCCCCCCCCCCCC-ccccCcccchhh----h-hhhhhccCCceec
Q 008193 261 TCNCAFHQKCLDPPLDTESIPPGDQ-GWFCKFCECKME----I-IESMNAHIGTSFS 311 (574)
Q Consensus 261 ~C~rafH~~Cl~PPL~~~~iP~gde-~W~C~~C~~k~~----~-~~~~n~~~g~~f~ 311 (574)
.|+|.|...+..-|+...++|.... ..|||.|..-.. . ...=.+.+|+.|.
T Consensus 108 ~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s~r~~~iDGAyFGtsFp 164 (215)
T 4dgl_A 108 YCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFP 164 (215)
T ss_dssp BCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSSTTSTTSBGGGTTTTHH
T ss_pred cCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCcccccccccceecCcch
Confidence 3555554433333333335554322 589999964211 1 1122466777764
No 278
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=21.26 E-value=33 Score=23.67 Aligned_cols=10 Identities=50% Similarity=1.371 Sum_probs=8.5
Q ss_pred CCCCccccCccc
Q 008193 282 PGDQGWFCKFCE 293 (574)
Q Consensus 282 ~gde~W~C~~C~ 293 (574)
.|| |.|+.|-
T Consensus 4 ~gD--W~C~~C~ 13 (33)
T 2k1p_A 4 AND--WQCKTCS 13 (33)
T ss_dssp SSS--CBCSSSC
T ss_pred CCC--cccCCCC
Confidence 577 9999995
No 279
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.15 E-value=97 Score=24.01 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcC--CChhhHHHhhc
Q 008193 447 RMPPNAVEKLRQVFAE-----NELPSRIVKENLSKELS--LEPEKVNKWFK 490 (574)
Q Consensus 447 r~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~Lg--L~~~qV~vWFQ 490 (574)
.++++++..|..+|.. +.+.+..+-..+-+.+| ++..+|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5899999999999964 56788888888888888 55777887775
No 280
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=20.92 E-value=34 Score=30.64 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.0
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
...+|++||+++.++..|+-..|.
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHhCCCcccEEEEEeecCC
Confidence 378999999999999999887775
No 281
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=20.77 E-value=1.3e+02 Score=24.80 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHH-----hCCCCCHHHHHHHHHHcCC--ChhhHHHhhcc
Q 008193 448 MPPNAVEKLRQVFA-----ENELPSRIVKENLSKELSL--EPEKVNKWFKN 491 (574)
Q Consensus 448 ~t~~Q~~~Le~~F~-----~~~yPs~~~r~~LA~~LgL--~~~qV~vWFQN 491 (574)
||++|++.|+.+|. .+.+.+..+-..+...+|+ +..+|..+|+.
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 52 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGN 52 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 78899999999995 3557888888887777774 56677777753
No 282
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=20.55 E-value=1.5e+02 Score=24.36 Aligned_cols=44 Identities=5% Similarity=0.176 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHcCC--ChhhHHHhhcc
Q 008193 448 MPPNAVEKLRQVFAE-----NELPSRIVKENLSKELSL--EPEKVNKWFKN 491 (574)
Q Consensus 448 ~t~~Q~~~Le~~F~~-----~~yPs~~~r~~LA~~LgL--~~~qV~vWFQN 491 (574)
||++|++.|..+|.. +.+.+..+-..+-+.+|+ +..+|...|..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 689999999999964 567899988888888885 55667776654
No 283
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=20.54 E-value=54 Score=24.42 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=21.1
Q ss_pred HHHHHHHcC--CChhhHHHhhccccc
Q 008193 471 KENLSKELS--LEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~Lg--L~~~qV~vWFQNrR~ 494 (574)
..+||+.+| ++...|..|..+++.
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~~ 49 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDRA 49 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCSC
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCCC
Confidence 468999999 999999999988764
No 284
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=20.14 E-value=15 Score=30.32 Aligned_cols=47 Identities=15% Similarity=0.352 Sum_probs=30.8
Q ss_pred ccccccccccCCCCCCCCccccCCCcCCcccccccCCCCCCCCCCCCCCccccCcccchh
Q 008193 237 EHIICAKCKLREAFPDNDIVLCDGTCNCAFHQKCLDPPLDTESIPPGDQGWFCKFCECKM 296 (574)
Q Consensus 237 ed~~C~vC~~~~~~~~g~lLlCDg~C~rafH~~Cl~PPL~~~~iP~gde~W~C~~C~~k~ 296 (574)
+...|.+|...-. +.++ .- .|...||..|+...+.. . -.||.|....
T Consensus 21 ~~~~C~IC~~~~~---~p~~-~~-~CgH~fC~~Ci~~~~~~------~--~~CP~Cr~~~ 67 (99)
T 2y43_A 21 DLLRCGICFEYFN---IAMI-IP-QCSHNYCSLCIRKFLSY------K--TQCPTCCVTV 67 (99)
T ss_dssp HHTBCTTTCSBCS---SEEE-CT-TTCCEEEHHHHHHHHTT------C--CBCTTTCCBC
T ss_pred CCCCcccCChhhC---CcCE-EC-CCCCHhhHHHHHHHHHC------C--CCCCCCCCcC
Confidence 3467999987631 2333 33 28888999998765541 1 4699998654
No 285
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=20.02 E-value=62 Score=25.99 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=21.5
Q ss_pred HHHHHHHcCCChhhHHHhhccccc
Q 008193 471 KENLSKELSLEPEKVNKWFKNARY 494 (574)
Q Consensus 471 r~~LA~~LgL~~~qV~vWFQNrR~ 494 (574)
..+||+.||++..-|..|+.++..
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~i 36 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEI 36 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCC
Confidence 789999999999999999977555
Done!