BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008196
(574 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3B7M6|NEDD1_BOVIN Protein NEDD1 OS=Bos taurus GN=NEDD1 PE=2 SV=1
Length = 659
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Query: 471 VEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIE 530
V G+ +++ + ++ + +P+ P S+ ++ Q ++ETLD F+++ H D+ NL +E
Sbjct: 558 VTAGVAGSLSEKIVDTIGNSRPNAPL-SSVQIRFIQNMIQETLDDFREACHRDIVNLQVE 616
Query: 531 ILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLR 571
+++QFHMQ +M +++ N+ L+ EI+ LR+EN +LR
Sbjct: 617 MIKQFHMQLNEMHSLLERYSVNEG-LVAEIERLREENKRLR 656
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
YN D ++AS SLSG++ILH++ + + + Q +R L YS + LL + D+G
Sbjct: 127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSIRHLKYSLFKKSLLGSVSDNGI 186
Query: 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALL 121
+ LWD +SP ++ H AP +GI FS ++ + + + D ++ K L+
Sbjct: 187 VTLWDVNSQSPYHNFDSTHKAPASGICFSPVNELLFVTVGLDKRIILYDTSSKKLVKTLV 246
Query: 122 GGAVGDSI-LMPD 133
A ++ MPD
Sbjct: 247 ADAPLTAVDFMPD 259
>sp|P33215|NEDD1_MOUSE Protein NEDD1 OS=Mus musculus GN=Nedd1 PE=2 SV=2
Length = 660
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 471 VEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIE 530
V G+ +++ + +L + +P P S ++ Q ++ETLD F+++ H D+ NL +E
Sbjct: 559 VTAGVASSLSEKIVDTLGNSRPGAPLTS-VQIRFIQNMIQETLDDFREACHRDIVNLQVE 617
Query: 531 ILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLR 571
+++QFH+Q +M +++ N+ L+ EI+ LR+EN +LR
Sbjct: 618 MIKQFHIQLNEMHSLLERYSVNEG-LVAEIERLREENKRLR 657
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
YN D ++AS SLSG++ILH++ + + ++Q +R + YS + LL + D+G
Sbjct: 127 YNWNDCYIASGSLSGEIILHSVTTNTSSTPFGHGSKQPIRHIKYSLFRKSLLGSVSDNGV 186
Query: 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFS 90
+ LWD +S ++ H AP +GI FS
Sbjct: 187 VTLWDVNSQSSYHTFDSTHKAPASGICFS 215
>sp|Q8NHV4|NEDD1_HUMAN Protein NEDD1 OS=Homo sapiens GN=NEDD1 PE=1 SV=1
Length = 660
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 471 VEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIE 530
V G+ +++ ++ S+ + + + P S ++ Q ++ETLD F+++ H D+ NL +E
Sbjct: 559 VTAGVASSLSEKIADSIGNNRQNAPLTS-IQIRFIQNMIQETLDDFREACHRDIVNLQVE 617
Query: 531 ILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLR 571
+++QFHMQ +M +++ N+ L+ EI+ LR+EN +LR
Sbjct: 618 MIKQFHMQLNEMHSLLERYSVNEG-LVAEIERLREENKRLR 657
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%)
Query: 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
YN D ++AS SLSG++ILH++ + + + Q +R L YS + LL + D+G
Sbjct: 127 YNWNDCYIASGSLSGEIILHSVTTNLSSTPFGHGSNQSVRHLKYSLFKKSLLGSVSDNGI 186
Query: 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFS 90
+ LWD +SP ++ H AP +GI FS
Sbjct: 187 VTLWDVNSQSPYHNFDSVHKAPASGICFS 215
>sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog OS=Dictyostelium discoideum
GN=wdr61 PE=4 SV=1
Length = 299
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66
+L S+S SG++ ++++ +G K + + N+QVL + S N+ + V AG DGT+ +D
Sbjct: 111 NNLVSVSESGNISIYSVETGEKLRSISNTNKQVL-TMAISPNNEQIAV-AGLDGTVLCYD 168
Query: 67 T-TGRSPKVSWLKQHSAPTAGISFSSDDKAV 96
+GR +VS +K H P + FSSD K +
Sbjct: 169 VESGR--RVSEIKAHGVPIRSLCFSSDSKTI 197
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66
++LAS S ++ ++ +G A L+ P +RV +S +S HL V+ G DG++ LWD
Sbjct: 67 QYLASCSTDATTMVWSMDTGEIEAVLEHPGRSPVRVCAFSPDSSHL-VSGGSDGSIALWD 125
Query: 67 TTGRS 71
T R+
Sbjct: 126 FTSRT 130
>sp|P97865|PEX7_MOUSE Peroxisomal targeting signal 2 receptor OS=Mus musculus GN=Pex7
PE=2 SV=1
Length = 318
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 18 LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77
L+L SG + D N+ + V +S N+ H+LVT DG+L LWDT + +
Sbjct: 44 LVLDQNESGLQIFRSFDWNDGLFDV-TWSENNEHVLVTCSGDGSLQLWDTAKATGPLQVY 102
Query: 78 KQHSAPTAGISFS 90
K+H+ + +S
Sbjct: 103 KEHTQEVYSVDWS 115
>sp|O00628|PEX7_HUMAN Peroxisomal targeting signal 2 receptor OS=Homo sapiens GN=PEX7
PE=1 SV=1
Length = 323
Score = 39.7 bits (91), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 21 HNLASGAKAAELKDPNEQVLRV------------LDYSRNSRHLLVTAGDDGTLHLWDTT 68
H +G + DP+E LR+ + +S N+ H+L+T DG+L LWDT
Sbjct: 39 HYGIAGCGTLLILDPDEAGLRLFRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTA 98
Query: 69 GRSPKVSWLKQHSAPTAGISFS 90
+ + K+H+ + +S
Sbjct: 99 KAAGPLQVYKEHAQEVYSVDWS 120
>sp|Q7TMQ7|WDR91_MOUSE WD repeat-containing protein 91 OS=Mus musculus GN=Wdr91 PE=1 SV=1
Length = 748
Score = 39.3 bits (90), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 34 DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD 93
DP + ++ N +LLVT DG + L+D +SW K H + FS D+
Sbjct: 560 DPEPIAINCTAFNHNG-NLLVTGAADGVIRLFDMQQHECAMSW-KAHCGEVYSVEFSCDE 617
Query: 94 KAVSSL 99
AV S+
Sbjct: 618 NAVYSI 623
>sp|B2RYI0|WDR91_RAT WD repeat-containing protein 91 OS=Rattus norvegicus GN=Wdr91 PE=2
SV=1
Length = 747
Score = 38.9 bits (89), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 34 DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD 93
DP + ++ N +LLVT DG + L+D +SW K H + FS D+
Sbjct: 559 DPEPIAINCTAFNHNG-NLLVTGAADGVIRLFDMQQHGCAMSW-KAHCGEVYSVEFSYDE 616
Query: 94 KAVSSL 99
AV+S+
Sbjct: 617 NAVNSI 622
>sp|Q6DUZ9|TSSC1_GECJA Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1
Length = 387
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS 90
Q++R LD++ N ++ L + GDD + WDT S V L++HS + ++
Sbjct: 229 QLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVSDPVKTLEEHSHWVWNVRYN 281
>sp|Q5RE10|TSSC1_PONAB Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1
Length = 414
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS- 90
+++ + Q++R LD++ N ++ L + GDD + WDT + V L++HS + ++
Sbjct: 250 IENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNH 309
Query: 91 SDDKAV 96
S D+ V
Sbjct: 310 SHDQLV 315
>sp|Q54ED4|GRWD1_DICDI Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium
discoideum GN=grwd1 PE=3 SV=1
Length = 482
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTG---RSPKVSWLKQHSAPTAGISFS 90
+ V+ +SRN +LLV+ DDG+ +WD SP VS K H+ P I ++
Sbjct: 342 VNVISWSRNVEYLLVSGCDDGSFRVWDLRAFKDNSP-VSDFKYHTGPITSIEWN 394
>sp|Q53HC9|TSSC1_HUMAN Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2
Length = 387
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS- 90
+++ + Q++R LD++ N ++ L + GDD + WDT + V L++HS + ++
Sbjct: 223 IENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNH 282
Query: 91 SDDKAV 96
S D+ V
Sbjct: 283 SHDQLV 288
>sp|Q4R571|TSSC1_MACFA Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1
Length = 387
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS- 90
+++ + Q++R LD++ N ++ L + GDD + WDT + V L++HS + ++
Sbjct: 223 IENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNH 282
Query: 91 SDDKAV 96
S D+ V
Sbjct: 283 SHDQLV 288
>sp|Q5XJP1|TSSC1_DANRE Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1
Length = 387
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 22 NLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81
+L S ++ +++ + Q++R LD++ N ++ L + GDD + WD S V L++HS
Sbjct: 213 DLRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDVRHISEPVKCLEEHS 272
Query: 82 APTAGISFS 90
+ ++
Sbjct: 273 HWVWSVRYN 281
>sp|Q5PPK9|TSSC1_RAT Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1
Length = 386
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%)
Query: 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS 90
+++ + Q++R LD++ N ++ L + GDD + WDT + V L++HS + ++
Sbjct: 223 IENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYN 281
>sp|Q8K0G5|TSSC1_MOUSE Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=2
Length = 386
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%)
Query: 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS 90
+++ + Q++R LD++ N ++ L + GDD + WDT + V L++HS + ++
Sbjct: 223 IENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWSVRYN 281
>sp|Q7T0P4|POC1A_XENLA POC1 centriolar protein homolog A OS=Xenopus laevis GN=poc1a PE=1
SV=2
Length = 441
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
+N + LAS S+ L++ N+ + +A + +L V D+S S HL+ +A D T
Sbjct: 26 FNANTKQLASGSMDSCLMVWNMKTQMRAYRFVGHKDAILSV-DFS-PSGHLIASASRDKT 83
Query: 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFS---------SDDKAVSSLCWQRAKPVF 108
+ LW + + + K H+ +SFS SDDK + R K +F
Sbjct: 84 VRLWVPSVKGESTA-FKAHTGTVRSVSFSGDGQSLVTASDDKTIKVWTVHRQKFLF 138
>sp|Q6DFF9|MABP1_XENLA Mitogen-activated protein kinase-binding protein 1 OS=Xenopus
laevis GN=mapkbp1 PE=2 SV=1
Length = 1580
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHL 64
+HLAS +G L +H L S + +++ + ++L L+YS+ +LL +A D +H+
Sbjct: 491 QHLASGDRTGTLRVHELQSMTELLKVEAHDSEIL-CLEYSKPDTGLNLLASASRDRLIHV 549
Query: 65 WDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFI 109
D + L HS+ + F+++D V + K ++
Sbjct: 550 LDASKDYSLQQTLDDHSSSITAVKFAANDGKVQMISCGADKSIYF 594
>sp|Q8NFH3|NUP43_HUMAN Nucleoporin Nup43 OS=Homo sapiens GN=NUP43 PE=1 SV=1
Length = 380
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISF 89
L +D N +H++ T G DG L +WD + VS LK H A + F
Sbjct: 220 LHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF 269
>sp|Q3KPT3|TSSC1_XENLA Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1
Length = 387
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS- 90
+++ + Q++R LD++ N ++ L + GDD + WDT V L++HS + ++
Sbjct: 223 IENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNH 282
Query: 91 SDDKAV 96
S D+ V
Sbjct: 283 SHDQLV 288
>sp|Q5M8I4|TSSC1_XENTR Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1
Length = 387
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS- 90
+++ + Q++R LD++ N ++ L + GDD + WDT V L++HS + ++
Sbjct: 223 IENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNIHEPVKTLEEHSHWVWSVRYNH 282
Query: 91 SDDKAV 96
S D+ V
Sbjct: 283 SHDQLV 288
>sp|Q0ULF5|SEC31_PHANO Protein transport protein SEC31 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=SEC31 PE=3 SV=3
Length = 1256
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 9 LASISLSGDLILHNLASGAKAAEL----KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL 64
LAS G+L +H+L +K+ L +P+E LD+++ H+L T G + +
Sbjct: 137 LASAGAKGELFVHDLDDESKSFRLGKAGANPDE--YTTLDWNKKVAHILATGSSGGFVTV 194
Query: 65 WDTTGR 70
WD G+
Sbjct: 195 WDVKGK 200
>sp|Q8R537|PEX7_CRIGR Peroxisomal targeting signal 2 receptor OS=Cricetulus griseus
GN=PEX7 PE=1 SV=1
Length = 318
Score = 37.0 bits (84), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 21 HNLASGAKAAELKDPNE---QVLRVLDYS---------RNSRHLLVTAGDDGTLHLWDTT 68
H +G + D N+ Q+ R D+S ++ H+LVT DG+L LWDT
Sbjct: 34 HYGIAGCGTLIILDQNQSGLQIFRSFDWSDGLFDVTWSEDNEHVLVTCSGDGSLQLWDTA 93
Query: 69 GRSPKVSWLKQHSAPTAGISFS 90
+ + K+H+ + +S
Sbjct: 94 KATGPLQVYKEHTQEVYSVDWS 115
>sp|Q5XI13|GRWD1_RAT Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus
GN=Grwd1 PE=2 SV=1
Length = 445
Score = 36.2 bits (82), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDT---TGRSPKVSWLKQHSAPTAGISFSSDDKAV 96
+ V+ +SR LL + GDDGTL +WD SP V+ KQH AP + + D V
Sbjct: 310 VNVISWSRREPFLL-SGGDDGTLKVWDLRQFKSGSP-VATFKQHVAPVTSVEWHPQDSGV 367
>sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b
PE=2 SV=1
Length = 477
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL 62
NCK +A+ S L+L +L A+A ++ V+ L +S +LL +A D T+
Sbjct: 29 NCK--QIATASWDTFLMLWSLKPHARAYRYVG-HKDVVTSLQFSPQG-NLLASASRDKTV 84
Query: 63 HLWDTTGRSPKVSWLKQHSAPTAGISFSSD 92
LW R K S K H+AP + FS+D
Sbjct: 85 RLW-VLDRKGKSSEFKAHTAPVRSVDFSAD 113
>sp|Q6GMD2|WDR61_XENLA WD repeat-containing protein 61 OS=Xenopus laevis GN=wdr61 PE=2
SV=1
Length = 305
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
Y+ ++LAS ++ G + + ++A+G K + + +R L +S +S+ LLVTA DDG
Sbjct: 156 YSPDGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSTDSQ-LLVTASDDGY 213
Query: 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD 93
+ ++D S + L H + ++FS DD
Sbjct: 214 IKIYDVQHASLAAT-LSGHGSWVLNVAFSPDD 244
>sp|P74442|Y143_SYNY3 Uncharacterized WD repeat-containing protein slr0143
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0143 PE=4 SV=1
Length = 1191
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 39 VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSS 98
+ RV D+S N + + TAG D T+ +WD G + LK H +SFS D + ++S
Sbjct: 604 IYRV-DFSPNGK-IFATAGQDQTVKIWDLDGNLLQT--LKGHQDSVYSVSFSPDGEILAS 659
Query: 99 LCWQRAKPVFIDETTCKAETALLGG---AVGDSILMPD 133
R + V + A+LGG +V D+ PD
Sbjct: 660 TS--RDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPD 695
>sp|P59235|NUP43_MOUSE Nucleoporin Nup43 OS=Mus musculus GN=Nup43 PE=2 SV=2
Length = 380
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISF 89
L +D + +H++ T G DG L +WD + VS LK H A + F
Sbjct: 220 LHCVDRHPDQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF 269
>sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1
SV=1
Length = 476
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL 62
NCK +A+ S L+L +L A+A ++ V+ L +S +LL +A D T+
Sbjct: 29 NCK--QIATASWDTFLMLWSLKPHARAYRYVG-HKDVVTSLQFSPQG-NLLASASRDRTV 84
Query: 63 HLWDTTGRSPKVSWLKQHSAPTAGISFSSD 92
LW R K S K H+AP + FS+D
Sbjct: 85 RLW-VLDRKGKSSEFKAHTAPVRSVDFSAD 113
>sp|Q6NS57|MABP1_MOUSE Mitogen-activated protein kinase-binding protein 1 OS=Mus musculus
GN=Mapkbp1 PE=1 SV=1
Length = 1503
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHL 64
+HLAS G L +H L S ++ +++ + ++L L+YS+ LL +A D +H+
Sbjct: 487 QHLASGDRMGTLRIHELQSLSEMLKVEAHDSEIL-CLEYSKPDTGLKLLASASRDRLIHV 545
Query: 65 WDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFI 109
D L +HS+ + F++ D V + K ++
Sbjct: 546 LDAGREYSLQQTLDEHSSSITAVKFAASDGQVRMISCGADKSIYF 590
>sp|Q6TEN6|WDR91_DANRE WD repeat-containing protein 91 OS=Danio rerio GN=wdr91 PE=1 SV=2
Length = 724
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 14 LSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72
+SG L+L + + + + +P + ++ N +LLVT DG + L+D
Sbjct: 515 VSGQLLLWDTKTVKQQLQFALEPGPVAINCTAFNHNG-NLLVTGAADGIIRLFDMQRYES 573
Query: 73 KVSWLKQHSAPTAGISFSSDDKAVSSL 99
+SW K H + FS D+ V S+
Sbjct: 574 ALSW-KAHDGEVYSVEFSYDENTVFSI 599
>sp|Q28I85|POC1A_XENTR POC1 centriolar protein homolog A OS=Xenopus tropicalis GN=poc1a
PE=2 SV=1
Length = 441
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
+N + LAS S+ L++ N+ +A + +L V D+S S HL+ +A D T
Sbjct: 26 FNPNTKQLASGSMDSCLMIWNMKPQMRAYRFVGHKDAILSV-DFS-PSGHLIASASRDKT 83
Query: 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFS---------SDDKAVSSLCWQRAKPVF 108
+ LW + + K H+ +SFS SDDK + R K +F
Sbjct: 84 VRLWVPSVKGESTV-FKAHTGTVRSVSFSGDGQSLVTASDDKTIKVWTVHRQKFLF 138
>sp|Q9BQ67|GRWD1_HUMAN Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens
GN=GRWD1 PE=1 SV=1
Length = 446
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDT---TGRSPKVSWLKQHSAPTAGISFSSDDKAV 96
+ V+ +SR LL + GDDG L +WD SP V+ KQH AP + + D V
Sbjct: 311 VNVISWSRREPFLL-SGGDDGALKIWDLRQFKSGSP-VATFKQHVAPVTSVEWHPQDSGV 368
>sp|Q96KV7|WDR90_HUMAN WD repeat-containing protein 90 OS=Homo sapiens GN=WDR90 PE=2 SV=2
Length = 1748
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD- 66
HL + S +++ + SG EL + + L S ++R LL+ AG T+ +WD
Sbjct: 899 HLLVSTSSNRVVVLDAVSGRIIRELPGVHPEPCPSLTLSEDARFLLIAAGR--TIKVWDY 956
Query: 67 TTGRSPKVSWLKQHSAPTAGISFSSDDKAVSS 98
T SP HS P ++FS D + V S
Sbjct: 957 ATQASPGPQVYIGHSEPVQAVAFSPDQQQVLS 988
>sp|Q810D6|GRWD1_MOUSE Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus
GN=Grwd1 PE=2 SV=2
Length = 446
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDT---TGRSPKVSWLKQHSAPTAGISFSSDDKAV 96
+ V+ +SR LL + GDDG L +WD SP V+ KQH AP + + D V
Sbjct: 311 VNVISWSRREPFLL-SGGDDGALKVWDLRQFKSGSP-VATFKQHMAPVTSVEWHPQDSGV 368
>sp|O60336|MABP1_HUMAN Mitogen-activated protein kinase-binding protein 1 OS=Homo sapiens
GN=MAPKBP1 PE=2 SV=4
Length = 1514
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHL 64
+HLAS G L +H L S ++ +++ + ++L L+YS+ LL +A D +H+
Sbjct: 492 QHLASGDRMGTLRVHELQSLSEMLKVEAHDSEIL-CLEYSKPDTGLKLLASASRDRLIHV 550
Query: 65 WDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFI 109
D L +HS+ + F++ D V + K ++
Sbjct: 551 LDAGREYSLQQTLDEHSSSITAVKFAASDGQVRMISCGADKSIYF 595
>sp|B3RQN1|WDR12_TRIAD Ribosome biogenesis protein WDR12 homolog OS=Trichoplax adhaerens
GN=TRIADDRAFT_55049 PE=3 SV=2
Length = 432
Score = 33.5 bits (75), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHL-LVTAGDDGTLH 63
KD+ + + SL G + N+A G + A K V V S+++ H +VTA DGTL
Sbjct: 120 KDDCILAGSLDGTARIWNMA-GEEYAIFKGHESYVNGVEWISKDNNHATIVTASQDGTLR 178
Query: 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLC 100
LW+ + V L + T ++ + +++ + +C
Sbjct: 179 LWEWAIGTKSVECLCECKGHTQAVNAVTVNQSKTKIC 215
>sp|Q6PBD6|WDR61_XENTR WD repeat-containing protein 61 OS=Xenopus tropicalis GN=wdr61 PE=2
SV=1
Length = 305
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
Y+ ++LAS ++ G + + ++A+G K + + +R L +S +S+ LLVTA DDG
Sbjct: 156 YSPDGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGY 213
Query: 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD 93
+ +++ S + L H + ++FS DD
Sbjct: 214 IKIYEVQHASLAAT-LSGHGSWVLNVAFSPDD 244
>sp|B6GZA1|SCONB_PENCW Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075
/ Wisconsin 54-1255) GN=sconB PE=3 SV=1
Length = 673
Score = 32.7 bits (73), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN---SRHLLVTAG 57
+ +C+++H+ + S GD IL L+ +A PN D ++ S ++T+G
Sbjct: 522 LADCENDHVGTSSQGGDNILSTLSPLLEATSPSHPNSPFGSSFDQDQDRIESPRYILTSG 581
Query: 58 DDGTLHLWDT-TGRS 71
D T+ LW+T TGR
Sbjct: 582 VDTTIRLWETSTGRC 596
>sp|Q6P5M2|WDR61_DANRE WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1
Length = 305
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT 61
Y+ ++LAS ++ G + + ++A+G K + + +R L +S +S+ LLVTA DDG
Sbjct: 156 YSPDGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGY 213
Query: 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD 93
+ ++D + + L H + ++FS DD
Sbjct: 214 IKIYDVQHANLAGT-LSGHGSWVLSVAFSPDD 244
>sp|O08653|TEP1_RAT Telomerase protein component 1 OS=Rattus norvegicus GN=Tep1 PE=1 SV=1
Length = 2629
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 10 ASISLSGDLI-LHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68
++ GD I ++ ++SG + A+ ++ N V ++ S + +LV+ +DG+LH W
Sbjct: 1953 VAVGYRGDGIKIYRISSGPQEAQCQELNVAVSALVWLSPS---VLVSGAEDGSLHGWMLR 2009
Query: 69 GRSPKVSWLKQ-HSAPTAGISFSSDDKAVSS-----LCWQR---AKPVFIDETTCKAETA 119
S + WL P G++ S + A +S W R +P ++E C AE
Sbjct: 2010 RNSLQSLWLSSVCQKPVLGLAASQEFLASASEDFTVRLWPRQLLTQPHAVEELPCAAELR 2069
Query: 120 LLGGAVGDSILMPD 133
G V PD
Sbjct: 2070 GHEGPVCCCSFSPD 2083
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,291,553
Number of Sequences: 539616
Number of extensions: 9154964
Number of successful extensions: 29404
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 288
Number of HSP's that attempted gapping in prelim test: 27396
Number of HSP's gapped (non-prelim): 1266
length of query: 574
length of database: 191,569,459
effective HSP length: 123
effective length of query: 451
effective length of database: 125,196,691
effective search space: 56463707641
effective search space used: 56463707641
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)