Query 008196
Match_columns 574
No_of_seqs 258 out of 1956
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 20:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4378 Nuclear protein COP1 [ 100.0 8.5E-51 1.8E-55 428.6 30.4 498 1-574 128-673 (673)
2 KOG0279 G protein beta subunit 99.6 3E-14 6.6E-19 144.2 12.7 200 2-240 71-275 (315)
3 KOG0271 Notchless-like WD40 re 99.5 5.1E-14 1.1E-18 147.3 11.8 262 2-270 123-440 (480)
4 KOG0263 Transcription initiati 99.5 4.3E-14 9.4E-19 157.6 9.9 100 1-103 542-641 (707)
5 KOG0272 U4/U6 small nuclear ri 99.5 6.3E-14 1.4E-18 147.8 9.4 108 1-111 310-418 (459)
6 KOG0272 U4/U6 small nuclear ri 99.5 8.3E-14 1.8E-18 147.0 9.4 105 2-108 353-457 (459)
7 KOG0271 Notchless-like WD40 re 99.5 8.5E-14 1.8E-18 145.6 8.6 99 1-102 374-472 (480)
8 KOG0291 WD40-repeat-containing 99.5 3.6E-13 7.7E-18 149.8 14.0 105 2-108 358-505 (893)
9 KOG0266 WD40 repeat-containing 99.5 4.4E-13 9.6E-18 146.3 13.4 106 1-111 210-316 (456)
10 KOG0263 Transcription initiati 99.4 4.9E-13 1.1E-17 149.3 11.6 96 2-100 501-596 (707)
11 KOG0279 G protein beta subunit 99.4 4.3E-12 9.3E-17 128.7 13.0 108 2-113 113-222 (315)
12 PTZ00421 coronin; Provisional 99.4 5.1E-12 1.1E-16 139.7 14.6 106 2-111 83-196 (493)
13 KOG0266 WD40 repeat-containing 99.3 2.6E-11 5.7E-16 132.4 14.6 103 2-106 167-271 (456)
14 KOG0645 WD40 repeat protein [G 99.3 4.6E-11 1E-15 121.0 14.4 109 2-113 22-135 (312)
15 KOG0286 G-protein beta subunit 99.3 2.3E-11 5E-16 124.2 10.8 126 2-129 194-329 (343)
16 KOG0284 Polyadenylation factor 99.2 1.5E-11 3.3E-16 129.7 8.8 131 1-136 187-318 (464)
17 PTZ00420 coronin; Provisional 99.2 2.2E-10 4.7E-15 128.6 17.4 105 2-111 82-195 (568)
18 KOG0273 Beta-transducin family 99.2 1.5E-10 3.2E-15 124.0 14.0 200 2-271 243-484 (524)
19 KOG0273 Beta-transducin family 99.2 1.1E-10 2.5E-15 124.9 13.0 107 1-111 366-480 (524)
20 KOG0295 WD40 repeat-containing 99.2 1.3E-10 2.9E-15 121.3 12.8 99 3-103 244-356 (406)
21 KOG0275 Conserved WD40 repeat- 99.2 6.3E-12 1.4E-16 129.6 2.9 103 1-104 220-329 (508)
22 KOG0283 WD40 repeat-containing 99.2 3.5E-11 7.5E-16 135.4 8.7 97 1-102 274-431 (712)
23 KOG0295 WD40 repeat-containing 99.2 1.5E-10 3.3E-15 120.9 11.8 98 6-106 304-401 (406)
24 KOG0645 WD40 repeat protein [G 99.2 4.5E-10 9.8E-15 113.9 14.6 109 1-111 68-180 (312)
25 KOG0318 WD40 repeat stress pro 99.2 3.5E-10 7.5E-15 122.5 14.4 101 1-103 197-342 (603)
26 KOG0319 WD40-repeat-containing 99.2 3.2E-10 7E-15 126.5 14.0 98 2-102 471-568 (775)
27 KOG0316 Conserved WD40 repeat- 99.1 2.1E-10 4.5E-15 114.6 10.8 103 1-106 24-126 (307)
28 KOG0281 Beta-TrCP (transducin 99.1 8.8E-11 1.9E-15 122.2 8.3 129 3-138 327-480 (499)
29 PTZ00421 coronin; Provisional 99.1 1.1E-09 2.3E-14 121.4 17.2 107 2-111 133-243 (493)
30 KOG0283 WD40 repeat-containing 99.1 1.8E-10 3.9E-15 129.7 10.6 94 6-103 380-473 (712)
31 KOG0286 G-protein beta subunit 99.1 5.8E-10 1.3E-14 114.1 12.9 95 5-102 155-250 (343)
32 KOG0282 mRNA splicing factor [ 99.1 2.4E-10 5.2E-15 122.7 10.4 106 1-111 265-370 (503)
33 KOG0302 Ribosome Assembly prot 99.1 5E-10 1.1E-14 117.6 12.4 94 2-98 265-364 (440)
34 KOG0319 WD40-repeat-containing 99.1 2.4E-10 5.3E-15 127.4 10.4 104 2-110 513-616 (775)
35 KOG0264 Nucleosome remodeling 99.1 6.4E-10 1.4E-14 118.6 13.1 107 6-114 240-348 (422)
36 KOG0310 Conserved WD40 repeat- 99.1 8.4E-10 1.8E-14 118.6 13.9 97 2-100 118-215 (487)
37 KOG0285 Pleiotropic regulator 99.1 4.2E-10 9.2E-15 117.5 10.9 117 2-123 159-275 (460)
38 KOG0289 mRNA splicing factor [ 99.1 4.1E-10 8.8E-15 119.8 10.7 98 1-100 354-451 (506)
39 KOG0315 G-protein beta subunit 99.1 5.7E-10 1.2E-14 112.3 10.9 119 2-123 91-257 (311)
40 KOG0315 G-protein beta subunit 99.1 1.4E-09 3E-14 109.5 13.5 120 3-126 176-301 (311)
41 PTZ00420 coronin; Provisional 99.1 2.5E-09 5.5E-14 120.1 17.2 106 2-111 133-246 (568)
42 KOG0284 Polyadenylation factor 99.1 1.5E-10 3.2E-15 122.3 6.6 108 1-109 271-378 (464)
43 KOG0293 WD40 repeat-containing 99.1 6E-10 1.3E-14 118.0 10.4 97 2-100 232-331 (519)
44 cd00200 WD40 WD40 domain, foun 99.0 2.4E-09 5.3E-14 101.1 12.8 99 2-103 185-283 (289)
45 KOG0647 mRNA export protein (c 99.0 2.2E-09 4.7E-14 110.4 12.2 101 2-106 35-140 (347)
46 KOG0265 U5 snRNP-specific prot 99.0 2.5E-09 5.5E-14 109.7 12.1 135 1-138 54-207 (338)
47 KOG0973 Histone transcription 99.0 1.2E-09 2.6E-14 126.0 10.2 103 2-107 77-197 (942)
48 KOG0275 Conserved WD40 repeat- 99.0 1.8E-10 3.9E-15 119.0 2.9 103 2-107 271-374 (508)
49 cd00200 WD40 WD40 domain, foun 99.0 7E-09 1.5E-13 98.0 13.5 105 2-111 17-121 (289)
50 KOG0276 Vesicle coat complex C 99.0 1E-09 2.2E-14 120.9 8.5 103 2-106 148-252 (794)
51 KOG0276 Vesicle coat complex C 99.0 4.5E-09 9.7E-14 115.9 13.1 106 2-109 63-169 (794)
52 KOG0292 Vesicle coat complex C 99.0 1.5E-09 3.3E-14 123.0 9.8 101 1-104 58-158 (1202)
53 KOG0291 WD40-repeat-containing 99.0 6.7E-09 1.5E-13 116.4 13.7 100 2-104 315-415 (893)
54 KOG0269 WD40 repeat-containing 98.9 2.3E-09 5.1E-14 120.2 10.0 103 6-111 146-248 (839)
55 KOG0973 Histone transcription 98.9 3.4E-09 7.5E-14 122.2 11.6 128 1-131 136-272 (942)
56 KOG0772 Uncharacterized conser 98.9 2.7E-09 5.9E-14 115.6 9.7 98 2-100 325-428 (641)
57 KOG1007 WD repeat protein TSSC 98.9 4.9E-09 1.1E-13 107.4 10.6 100 2-102 178-280 (370)
58 KOG0310 Conserved WD40 repeat- 98.9 2.5E-09 5.3E-14 115.1 8.8 118 2-122 76-194 (487)
59 KOG0641 WD40 repeat protein [G 98.9 8.9E-09 1.9E-13 102.6 12.0 105 1-107 189-299 (350)
60 KOG1273 WD40 repeat protein [G 98.9 7.5E-09 1.6E-13 107.0 11.8 96 1-100 30-125 (405)
61 KOG0303 Actin-binding protein 98.9 5.5E-09 1.2E-13 110.4 10.9 105 2-111 89-201 (472)
62 KOG4378 Nuclear protein COP1 [ 98.9 1.4E-06 3E-11 94.7 29.2 93 2-98 216-309 (673)
63 KOG0265 U5 snRNP-specific prot 98.9 8.2E-09 1.8E-13 106.0 11.7 120 2-126 98-217 (338)
64 KOG0772 Uncharacterized conser 98.9 2.8E-09 6E-14 115.5 8.5 112 2-115 276-397 (641)
65 KOG0292 Vesicle coat complex C 98.9 3.1E-09 6.8E-14 120.5 8.8 107 2-111 17-123 (1202)
66 KOG0318 WD40 repeat stress pro 98.9 1.3E-08 2.8E-13 110.6 13.0 114 2-119 451-566 (603)
67 KOG0274 Cdc4 and related F-box 98.9 2.4E-08 5.3E-13 111.7 15.6 222 5-275 260-488 (537)
68 KOG0313 Microtubule binding pr 98.9 5.1E-09 1.1E-13 110.2 9.5 100 2-103 308-410 (423)
69 PLN00181 protein SPA1-RELATED; 98.9 1.8E-08 4E-13 116.9 14.7 99 2-104 583-683 (793)
70 KOG0285 Pleiotropic regulator 98.9 1.1E-08 2.4E-13 107.1 11.3 99 2-103 201-299 (460)
71 PLN00181 protein SPA1-RELATED; 98.9 4.4E-08 9.6E-13 113.7 17.5 105 2-111 540-646 (793)
72 KOG2394 WD40 protein DMR-N9 [G 98.9 2.9E-09 6.2E-14 115.8 7.0 87 2-91 298-384 (636)
73 KOG1445 Tumor-specific antigen 98.9 3.6E-09 7.8E-14 116.6 7.7 103 5-111 639-748 (1012)
74 KOG0316 Conserved WD40 repeat- 98.9 2E-08 4.4E-13 100.6 12.3 133 4-138 69-260 (307)
75 KOG0282 mRNA splicing factor [ 98.9 3.9E-09 8.5E-14 113.5 7.7 95 2-100 222-319 (503)
76 KOG0289 mRNA splicing factor [ 98.9 3.5E-08 7.5E-13 105.4 14.3 99 3-103 312-411 (506)
77 KOG0267 Microtubule severing p 98.8 2.5E-09 5.4E-14 119.3 5.8 96 2-100 78-173 (825)
78 KOG0306 WD40-repeat-containing 98.8 8.2E-09 1.8E-13 115.7 8.7 100 2-104 558-657 (888)
79 KOG0639 Transducin-like enhanc 98.8 6.7E-09 1.4E-13 112.3 6.9 120 2-124 473-601 (705)
80 KOG0640 mRNA cleavage stimulat 98.8 2.5E-08 5.5E-13 103.0 10.8 97 2-100 224-324 (430)
81 KOG0313 Microtubule binding pr 98.8 3.5E-08 7.6E-13 104.0 11.4 124 2-131 268-394 (423)
82 KOG0293 WD40 repeat-containing 98.8 1.4E-08 3E-13 107.8 8.5 102 1-104 276-377 (519)
83 KOG0277 Peroxisomal targeting 98.8 5.6E-08 1.2E-12 98.3 12.3 93 6-100 117-210 (311)
84 KOG0308 Conserved WD40 repeat- 98.8 4E-08 8.7E-13 108.9 12.0 104 3-111 180-283 (735)
85 KOG0277 Peroxisomal targeting 98.8 1.4E-08 3.1E-13 102.6 7.8 105 2-107 155-261 (311)
86 KOG0296 Angio-associated migra 98.8 8.7E-08 1.9E-12 100.6 13.8 98 1-101 113-210 (399)
87 KOG0305 Anaphase promoting com 98.8 3.1E-08 6.8E-13 108.8 10.5 97 1-100 224-320 (484)
88 KOG0643 Translation initiation 98.8 7.1E-08 1.5E-12 98.2 12.2 102 1-106 17-118 (327)
89 KOG0306 WD40-repeat-containing 98.8 4.3E-08 9.3E-13 110.1 11.5 119 2-126 516-635 (888)
90 KOG0640 mRNA cleavage stimulat 98.8 3.3E-08 7.1E-13 102.2 9.7 98 1-100 119-235 (430)
91 KOG1407 WD40 repeat protein [F 98.8 2.7E-08 5.9E-13 100.8 9.0 100 2-105 197-296 (313)
92 KOG0294 WD40 repeat-containing 98.8 7E-08 1.5E-12 99.9 12.1 97 4-102 51-148 (362)
93 KOG0639 Transducin-like enhanc 98.7 2.3E-08 4.9E-13 108.3 8.4 127 2-138 517-645 (705)
94 KOG0296 Angio-associated migra 98.7 2E-07 4.3E-12 98.0 15.1 104 3-111 73-176 (399)
95 KOG0305 Anaphase promoting com 98.7 8.2E-08 1.8E-12 105.6 12.6 123 1-126 308-432 (484)
96 KOG0264 Nucleosome remodeling 98.7 1.2E-07 2.5E-12 101.6 12.4 124 2-127 185-318 (422)
97 KOG0281 Beta-TrCP (transducin 98.7 1.6E-08 3.6E-13 105.5 5.8 96 4-106 205-300 (499)
98 KOG1034 Transcriptional repres 98.7 3.8E-08 8.2E-13 102.3 8.3 98 8-106 107-206 (385)
99 KOG0278 Serine/threonine kinas 98.7 9.7E-08 2.1E-12 96.5 10.6 106 2-111 151-295 (334)
100 KOG4283 Transcription-coupled 98.7 9.1E-08 2E-12 98.4 10.4 96 7-103 159-268 (397)
101 KOG0643 Translation initiation 98.7 1.5E-07 3.3E-12 95.8 11.7 102 4-107 62-216 (327)
102 KOG0267 Microtubule severing p 98.7 1.6E-08 3.5E-13 113.0 4.8 100 2-104 120-219 (825)
103 KOG1036 Mitotic spindle checkp 98.7 1.1E-07 2.5E-12 98.0 10.3 100 2-107 21-120 (323)
104 PF08662 eIF2A: Eukaryotic tra 98.7 3.9E-07 8.4E-12 89.1 13.6 92 2-101 67-163 (194)
105 KOG1009 Chromatin assembly com 98.6 1.3E-07 2.8E-12 100.4 9.6 133 2-138 21-179 (434)
106 KOG1009 Chromatin assembly com 98.6 5.8E-08 1.2E-12 103.0 7.0 102 1-105 72-189 (434)
107 KOG0299 U3 snoRNP-associated p 98.6 1.2E-07 2.7E-12 101.7 8.9 96 2-100 210-305 (479)
108 KOG1274 WD40 repeat protein [G 98.6 4.5E-07 9.7E-12 103.8 13.6 107 2-111 146-260 (933)
109 TIGR03866 PQQ_ABC_repeats PQQ- 98.6 1.2E-06 2.6E-11 86.3 14.9 107 2-111 164-277 (300)
110 KOG2096 WD40 repeat protein [G 98.6 2.5E-07 5.4E-12 96.1 10.2 98 4-104 197-301 (420)
111 KOG0274 Cdc4 and related F-box 98.6 3.3E-07 7.2E-12 102.7 12.0 92 5-102 300-391 (537)
112 KOG0300 WD40 repeat-containing 98.6 2.4E-07 5.2E-12 96.1 9.9 109 2-114 280-388 (481)
113 KOG1446 Histone H3 (Lys4) meth 98.6 3.9E-07 8.4E-12 94.2 11.0 97 1-100 194-294 (311)
114 KOG1407 WD40 repeat protein [F 98.5 5.9E-07 1.3E-11 91.3 11.6 99 2-103 155-253 (313)
115 KOG1539 WD repeat protein [Gen 98.5 1.5E-07 3.3E-12 106.7 7.9 104 2-109 542-645 (910)
116 KOG0288 WD40 repeat protein Ti 98.5 5.5E-08 1.2E-12 103.3 4.1 101 2-105 183-285 (459)
117 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 2.6E-06 5.7E-11 83.9 15.7 92 6-101 1-92 (300)
118 KOG0646 WD40 repeat protein [G 98.5 7.6E-07 1.6E-11 95.9 12.5 95 1-98 130-234 (476)
119 KOG1445 Tumor-specific antigen 98.5 2.1E-07 4.6E-12 103.0 8.0 98 7-106 691-789 (1012)
120 KOG1063 RNA polymerase II elon 98.5 2.9E-07 6.3E-12 102.8 9.0 105 3-111 534-646 (764)
121 KOG0270 WD40 repeat-containing 98.5 3.6E-07 7.9E-12 97.9 9.1 99 5-105 191-311 (463)
122 KOG1007 WD repeat protein TSSC 98.5 8.2E-07 1.8E-11 91.4 10.9 107 2-111 222-359 (370)
123 KOG1332 Vesicle coat complex C 98.5 7.9E-07 1.7E-11 89.8 10.6 102 4-107 21-130 (299)
124 KOG0269 WD40 repeat-containing 98.5 2.2E-07 4.7E-12 104.8 7.0 92 5-98 99-194 (839)
125 KOG0646 WD40 repeat protein [G 98.5 1.1E-06 2.5E-11 94.6 12.1 96 3-100 90-195 (476)
126 KOG0308 Conserved WD40 repeat- 98.5 1.1E-06 2.3E-11 97.8 12.1 97 3-102 127-234 (735)
127 KOG1538 Uncharacterized conser 98.5 9.8E-07 2.1E-11 98.3 11.4 91 2-98 20-110 (1081)
128 KOG0270 WD40 repeat-containing 98.4 2.1E-06 4.5E-11 92.2 13.0 101 6-110 256-357 (463)
129 KOG0303 Actin-binding protein 98.4 1.1E-06 2.4E-11 93.3 10.5 126 2-132 139-269 (472)
130 KOG0294 WD40 repeat-containing 98.4 1.5E-06 3.2E-11 90.3 11.1 94 2-100 91-187 (362)
131 PRK01742 tolB translocation pr 98.4 3.8E-06 8.2E-11 91.1 14.7 94 1-100 210-310 (429)
132 KOG0301 Phospholipase A2-activ 98.4 1E-06 2.2E-11 98.6 9.9 90 8-104 153-242 (745)
133 KOG1274 WD40 repeat protein [G 98.4 2.2E-06 4.7E-11 98.4 12.5 98 2-102 104-209 (933)
134 KOG0290 Conserved WD40 repeat- 98.4 2.4E-06 5.1E-11 88.1 11.0 64 5-69 162-228 (364)
135 KOG1408 WD40 repeat protein [F 98.4 2.1E-06 4.5E-11 96.4 11.2 106 3-113 605-713 (1080)
136 KOG0300 WD40 repeat-containing 98.4 8.8E-07 1.9E-11 92.0 7.5 102 7-110 161-301 (481)
137 KOG1332 Vesicle coat complex C 98.4 1.5E-06 3.2E-11 87.8 8.9 110 7-119 176-292 (299)
138 KOG0647 mRNA export protein (c 98.3 2.5E-06 5.4E-11 88.2 10.5 68 2-71 80-148 (347)
139 KOG0268 Sof1-like rRNA process 98.3 5.6E-07 1.2E-11 94.7 5.8 106 2-110 195-301 (433)
140 KOG0288 WD40 repeat protein Ti 98.3 3.2E-06 7E-11 90.2 10.7 102 3-109 350-457 (459)
141 KOG1524 WD40 repeat-containing 98.3 2.2E-06 4.8E-11 93.8 9.5 96 1-101 111-246 (737)
142 KOG1034 Transcriptional repres 98.3 1.2E-06 2.7E-11 91.3 6.9 65 2-68 143-211 (385)
143 KOG2445 Nuclear pore complex c 98.3 8.3E-06 1.8E-10 84.6 12.7 108 1-111 20-142 (361)
144 KOG2110 Uncharacterized conser 98.3 7.2E-06 1.6E-10 86.6 12.5 96 3-100 138-237 (391)
145 KOG0641 WD40 repeat protein [G 98.3 6.5E-06 1.4E-10 82.5 11.5 100 3-104 240-342 (350)
146 KOG0302 Ribosome Assembly prot 98.3 3.5E-06 7.6E-11 89.2 10.1 92 8-100 226-321 (440)
147 KOG0642 Cell-cycle nuclear pro 98.3 2.7E-06 5.9E-11 93.5 9.4 106 2-111 302-424 (577)
148 KOG0299 U3 snoRNP-associated p 98.3 3.2E-06 7E-11 91.1 9.3 105 2-109 150-272 (479)
149 KOG4328 WD40 protein [Function 98.3 2.5E-06 5.5E-11 91.9 8.4 102 2-104 287-392 (498)
150 KOG2096 WD40 repeat protein [G 98.3 2.2E-06 4.8E-11 89.2 7.8 65 2-68 236-308 (420)
151 KOG1446 Histone H3 (Lys4) meth 98.2 2.8E-05 6E-10 80.8 15.4 229 2-271 22-264 (311)
152 COG2319 FOG: WD40 repeat [Gene 98.2 2.1E-05 4.5E-10 77.1 13.3 96 2-100 163-260 (466)
153 KOG1408 WD40 repeat protein [F 98.2 1.6E-06 3.6E-11 97.2 5.8 103 2-105 467-573 (1080)
154 KOG0321 WD40 repeat-containing 98.2 1E-05 2.2E-10 90.1 11.9 66 2-68 108-175 (720)
155 KOG0301 Phospholipase A2-activ 98.2 1.2E-05 2.7E-10 90.2 12.3 96 5-107 189-284 (745)
156 KOG0307 Vesicle coat complex C 98.2 2.4E-06 5.3E-11 99.7 6.5 104 2-106 72-194 (1049)
157 KOG2055 WD40 repeat protein [G 98.1 4.9E-06 1.1E-10 89.8 7.4 99 1-100 351-454 (514)
158 KOG0644 Uncharacterized conser 98.1 9.9E-07 2.2E-11 100.3 2.2 88 2-92 198-285 (1113)
159 KOG1063 RNA polymerase II elon 98.1 9.6E-06 2.1E-10 91.0 9.7 108 1-111 579-697 (764)
160 KOG2919 Guanine nucleotide-bin 98.1 1.6E-05 3.4E-10 83.1 10.4 97 2-100 166-269 (406)
161 PRK02889 tolB translocation pr 98.1 5.5E-05 1.2E-09 82.2 15.1 98 1-100 202-302 (427)
162 KOG0278 Serine/threonine kinas 98.1 9.8E-07 2.1E-11 89.4 1.4 93 5-100 70-162 (334)
163 KOG2139 WD40 repeat protein [G 98.1 3.3E-05 7.1E-10 81.8 12.6 96 2-100 203-299 (445)
164 PRK05137 tolB translocation pr 98.1 6.2E-05 1.3E-09 81.7 15.4 96 1-100 208-308 (435)
165 KOG0322 G-protein beta subunit 98.1 3.4E-06 7.4E-11 86.0 4.8 63 3-67 260-322 (323)
166 PF08662 eIF2A: Eukaryotic tra 98.1 8E-05 1.7E-09 72.9 14.3 107 2-113 13-133 (194)
167 KOG2048 WD40 repeat protein [G 98.1 1.6E-05 3.4E-10 89.1 10.3 99 2-103 162-267 (691)
168 KOG0771 Prolactin regulatory e 98.1 9.2E-06 2E-10 86.8 8.1 88 2-93 152-241 (398)
169 KOG1310 WD40 repeat protein [G 98.1 1E-05 2.3E-10 88.9 8.5 104 2-106 58-173 (758)
170 KOG0268 Sof1-like rRNA process 98.1 4.3E-06 9.4E-11 88.2 5.1 99 2-102 237-336 (433)
171 KOG1273 WD40 repeat protein [G 98.0 7.6E-06 1.6E-10 85.2 6.5 59 40-100 26-84 (405)
172 KOG2394 WD40 protein DMR-N9 [G 98.0 2.6E-05 5.6E-10 85.7 10.7 93 41-138 294-388 (636)
173 KOG0771 Prolactin regulatory e 98.0 4.2E-05 9.1E-10 81.8 11.7 103 2-106 194-349 (398)
174 PF00400 WD40: WD domain, G-be 98.0 1.6E-05 3.5E-10 56.9 5.8 39 26-66 1-39 (39)
175 PRK03629 tolB translocation pr 98.0 0.00015 3.3E-09 78.9 15.8 96 1-100 205-305 (429)
176 KOG4283 Transcription-coupled 98.0 6.7E-05 1.4E-09 77.8 11.9 91 5-98 113-205 (397)
177 PRK04922 tolB translocation pr 98.0 0.00021 4.5E-09 77.7 16.4 96 1-100 210-310 (433)
178 KOG1539 WD repeat protein [Gen 98.0 4.6E-05 1E-09 87.1 11.5 104 7-111 215-318 (910)
179 KOG0322 G-protein beta subunit 98.0 2E-05 4.3E-10 80.6 7.6 60 41-102 255-314 (323)
180 COG2319 FOG: WD40 repeat [Gene 98.0 0.00011 2.4E-09 72.0 12.7 99 3-104 119-222 (466)
181 PRK01742 tolB translocation pr 97.9 8.9E-05 1.9E-09 80.5 12.8 95 1-100 254-351 (429)
182 KOG2919 Guanine nucleotide-bin 97.9 1.6E-05 3.5E-10 83.0 6.3 99 2-102 258-361 (406)
183 KOG1188 WD40 repeat protein [G 97.9 0.0001 2.2E-09 77.5 12.2 92 7-99 41-135 (376)
184 KOG0650 WD40 repeat nucleolar 97.9 9.7E-05 2.1E-09 82.2 12.2 107 3-111 409-552 (733)
185 KOG2055 WD40 repeat protein [G 97.9 8.2E-05 1.8E-09 80.6 11.2 104 3-111 312-415 (514)
186 KOG0307 Vesicle coat complex C 97.9 2.3E-05 5.1E-10 91.8 7.2 103 7-111 175-282 (1049)
187 KOG2106 Uncharacterized conser 97.9 0.00013 2.9E-09 79.8 12.2 90 8-100 420-510 (626)
188 KOG0321 WD40 repeat-containing 97.9 4E-05 8.6E-10 85.6 8.3 107 6-116 64-178 (720)
189 KOG1036 Mitotic spindle checkp 97.8 0.00015 3.3E-09 75.3 11.8 89 5-100 64-152 (323)
190 KOG0649 WD40 repeat protein [G 97.8 0.0003 6.5E-09 71.5 13.1 66 3-71 123-189 (325)
191 KOG1963 WD40 repeat protein [G 97.8 0.00011 2.5E-09 84.2 11.2 99 2-104 213-315 (792)
192 PRK03629 tolB translocation pr 97.8 0.00048 1E-08 75.1 15.2 98 1-102 249-351 (429)
193 KOG4547 WD40 repeat-containing 97.8 0.0002 4.3E-09 79.4 12.2 91 3-98 111-206 (541)
194 TIGR02800 propeller_TolB tol-p 97.8 0.00051 1.1E-08 73.1 15.0 97 1-101 196-297 (417)
195 KOG1523 Actin-related protein 97.8 0.00011 2.3E-09 76.9 9.4 107 2-110 18-129 (361)
196 KOG2048 WD40 repeat protein [G 97.8 0.00036 7.8E-09 78.5 13.9 98 2-102 77-175 (691)
197 KOG4227 WD40 repeat protein [G 97.8 0.00019 4E-09 76.7 11.0 104 2-110 64-176 (609)
198 KOG1538 Uncharacterized conser 97.7 0.00027 5.9E-09 79.5 12.7 123 2-128 61-246 (1081)
199 KOG0974 WD-repeat protein WDR6 97.7 8.5E-05 1.8E-09 86.6 9.1 97 1-103 182-280 (967)
200 PRK04792 tolB translocation pr 97.7 0.00061 1.3E-08 74.8 15.5 96 1-100 224-324 (448)
201 KOG0974 WD-repeat protein WDR6 97.7 0.00017 3.6E-09 84.2 11.3 94 2-99 141-234 (967)
202 KOG2111 Uncharacterized conser 97.7 0.00078 1.7E-08 70.5 14.8 66 3-69 190-257 (346)
203 PRK11028 6-phosphogluconolacto 97.7 0.00052 1.1E-08 71.1 13.6 98 2-102 87-195 (330)
204 PF02239 Cytochrom_D1: Cytochr 97.7 0.0007 1.5E-08 72.8 14.7 100 1-103 43-149 (369)
205 KOG1188 WD40 repeat protein [G 97.7 0.00012 2.5E-09 77.1 7.9 90 3-93 126-223 (376)
206 PRK01029 tolB translocation pr 97.7 0.00082 1.8E-08 73.5 14.8 97 1-100 287-389 (428)
207 KOG2111 Uncharacterized conser 97.6 0.00034 7.3E-09 73.2 10.8 91 8-100 150-245 (346)
208 PRK05137 tolB translocation pr 97.6 0.001 2.2E-08 72.4 14.9 97 1-101 252-353 (435)
209 PRK04922 tolB translocation pr 97.6 0.0012 2.5E-08 71.9 15.2 96 1-100 254-354 (433)
210 PRK02889 tolB translocation pr 97.6 0.00092 2E-08 72.7 13.7 97 1-101 246-347 (427)
211 PRK11028 6-phosphogluconolacto 97.6 0.0012 2.5E-08 68.5 13.7 98 2-102 42-146 (330)
212 KOG2110 Uncharacterized conser 97.6 0.00049 1.1E-08 73.1 10.9 94 6-101 97-193 (391)
213 KOG1272 WD40-repeat-containing 97.6 7.8E-05 1.7E-09 80.9 5.0 100 2-104 217-316 (545)
214 KOG2106 Uncharacterized conser 97.5 0.00091 2E-08 73.5 12.3 104 2-111 208-314 (626)
215 PRK00178 tolB translocation pr 97.5 0.0022 4.8E-08 69.2 15.4 96 1-100 205-305 (430)
216 KOG4497 Uncharacterized conser 97.5 0.00094 2E-08 70.4 11.3 94 2-98 56-150 (447)
217 KOG0290 Conserved WD40 repeat- 97.5 0.00063 1.4E-08 70.6 9.8 96 2-100 204-355 (364)
218 KOG2445 Nuclear pore complex c 97.4 0.00047 1E-08 71.9 8.7 77 30-107 6-87 (361)
219 KOG1272 WD40-repeat-containing 97.4 0.0002 4.3E-09 77.8 6.2 87 3-93 260-346 (545)
220 PRK01029 tolB translocation pr 97.4 0.0027 5.9E-08 69.4 14.6 100 1-101 237-346 (428)
221 PF02239 Cytochrom_D1: Cytochr 97.4 0.0025 5.4E-08 68.6 13.5 102 6-111 5-107 (369)
222 KOG0642 Cell-cycle nuclear pro 97.4 0.00068 1.5E-08 75.1 9.2 66 2-69 352-427 (577)
223 KOG0649 WD40 repeat protein [G 97.3 0.0041 8.9E-08 63.5 13.1 115 2-121 18-194 (325)
224 KOG1524 WD40 repeat-containing 97.3 0.00085 1.8E-08 74.2 8.8 60 7-69 76-135 (737)
225 KOG4328 WD40 protein [Function 97.3 0.0012 2.6E-08 71.8 9.8 95 3-102 331-441 (498)
226 KOG1963 WD40 repeat protein [G 97.2 0.0017 3.6E-08 75.0 10.4 99 2-102 168-272 (792)
227 TIGR02800 propeller_TolB tol-p 97.2 0.0083 1.8E-07 63.8 14.6 97 2-102 241-342 (417)
228 PF06156 DUF972: Protein of un 97.1 0.001 2.3E-08 59.9 6.5 45 530-574 8-52 (107)
229 KOG1587 Cytoplasmic dynein int 97.1 0.0017 3.6E-08 73.5 9.2 106 2-111 406-514 (555)
230 PRK04792 tolB translocation pr 97.1 0.0083 1.8E-07 65.9 14.4 98 1-102 268-370 (448)
231 KOG0280 Uncharacterized conser 97.1 0.0012 2.6E-08 68.7 7.2 86 7-94 179-266 (339)
232 PRK04043 tolB translocation pr 97.0 0.016 3.4E-07 63.5 15.8 97 1-101 194-296 (419)
233 KOG4497 Uncharacterized conser 97.0 0.0012 2.6E-08 69.6 6.6 94 1-98 15-108 (447)
234 KOG4640 Anaphase-promoting com 97.0 0.0019 4.1E-08 72.6 8.6 87 2-90 28-114 (665)
235 KOG3881 Uncharacterized conser 97.0 0.0039 8.5E-08 66.8 10.4 97 6-104 216-313 (412)
236 PRK00178 tolB translocation pr 97.0 0.013 2.7E-07 63.4 14.6 96 1-100 249-349 (430)
237 PRK13169 DNA replication intia 96.9 0.0021 4.5E-08 58.3 6.5 45 530-574 8-52 (110)
238 KOG1310 WD40 repeat protein [G 96.9 0.0013 2.8E-08 72.9 6.0 73 29-103 43-117 (758)
239 KOG2321 WD40 repeat protein [G 96.9 0.0052 1.1E-07 68.6 10.5 95 3-98 184-290 (703)
240 PF11768 DUF3312: Protein of u 96.9 0.0046 1E-07 69.2 10.2 72 2-77 267-338 (545)
241 KOG1517 Guanine nucleotide bin 96.9 0.0042 9.2E-08 73.2 10.2 97 7-103 1178-1279(1387)
242 KOG0650 WD40 repeat nucleolar 96.9 0.00092 2E-08 74.6 4.4 101 1-104 573-673 (733)
243 KOG0280 Uncharacterized conser 96.9 0.0065 1.4E-07 63.4 10.2 105 2-107 129-237 (339)
244 KOG2315 Predicted translation 96.9 0.0087 1.9E-07 66.6 11.7 92 1-100 277-373 (566)
245 KOG2315 Predicted translation 96.7 0.0025 5.5E-08 70.7 6.5 85 1-91 318-410 (566)
246 KOG4227 WD40 repeat protein [G 96.7 0.011 2.4E-07 63.6 10.6 95 2-98 113-211 (609)
247 KOG1240 Protein kinase contain 96.6 0.02 4.4E-07 68.6 13.0 63 4-68 1059-1128(1431)
248 KOG2139 WD40 repeat protein [G 96.6 0.02 4.4E-07 61.2 11.7 101 2-106 148-263 (445)
249 KOG3914 WD repeat protein WDR4 96.6 0.004 8.7E-08 66.8 6.5 66 2-70 159-225 (390)
250 KOG1517 Guanine nucleotide bin 96.6 0.013 2.8E-07 69.4 11.0 95 5-100 1220-1323(1387)
251 smart00320 WD40 WD40 repeats. 96.5 0.007 1.5E-07 39.3 5.3 38 27-66 3-40 (40)
252 KOG0644 Uncharacterized conser 96.5 0.0047 1E-07 71.3 6.9 100 8-111 367-466 (1113)
253 KOG4714 Nucleoporin [Nuclear s 96.5 0.0025 5.5E-08 65.4 4.2 70 40-111 182-252 (319)
254 KOG1523 Actin-related protein 96.5 0.0078 1.7E-07 63.3 7.8 103 2-106 63-171 (361)
255 KOG1587 Cytoplasmic dynein int 96.5 0.012 2.7E-07 66.6 10.1 102 7-111 361-470 (555)
256 PF10282 Lactonase: Lactonase, 96.5 0.059 1.3E-06 57.0 14.5 105 1-105 198-315 (345)
257 KOG2321 WD40 repeat protein [G 96.5 0.027 5.8E-07 63.2 12.1 107 9-119 148-264 (703)
258 KOG3621 WD40 repeat-containing 96.5 0.01 2.2E-07 67.7 9.0 106 2-111 41-152 (726)
259 KOG3881 Uncharacterized conser 96.4 0.0063 1.4E-07 65.3 6.9 86 3-92 256-342 (412)
260 KOG1334 WD40 repeat protein [G 96.4 0.0014 3.1E-08 71.7 2.0 66 2-69 402-467 (559)
261 COG4467 Regulator of replicati 96.2 0.012 2.7E-07 52.8 6.5 43 532-574 10-52 (114)
262 KOG2041 WD40 repeat protein [G 96.2 0.018 4E-07 65.8 9.2 96 2-99 22-133 (1189)
263 COG0823 TolB Periplasmic compo 96.2 0.039 8.5E-07 60.8 11.5 99 1-106 199-305 (425)
264 PRK04043 tolB translocation pr 96.0 0.11 2.5E-06 56.9 14.3 93 2-100 240-337 (419)
265 KOG4547 WD40 repeat-containing 95.9 0.11 2.4E-06 58.2 13.3 94 5-100 69-163 (541)
266 KOG4532 WD40-like repeat conta 95.7 0.072 1.6E-06 55.3 10.1 91 2-93 166-262 (344)
267 KOG2695 WD40 repeat protein [G 95.7 0.024 5.1E-07 60.4 6.8 98 2-100 260-365 (425)
268 PF11768 DUF3312: Protein of u 95.6 0.069 1.5E-06 60.0 10.5 70 35-111 258-327 (545)
269 KOG2314 Translation initiation 95.6 0.045 9.8E-07 61.3 8.5 94 2-98 257-363 (698)
270 COG2706 3-carboxymuconate cycl 95.5 0.19 4.1E-06 53.7 12.7 97 1-99 151-261 (346)
271 KOG1334 WD40 repeat protein [G 95.5 0.042 9.1E-07 60.6 8.1 100 2-102 150-254 (559)
272 KOG2695 WD40 repeat protein [G 95.5 0.028 6.1E-07 59.9 6.3 84 5-90 310-401 (425)
273 TIGR02658 TTQ_MADH_Hv methylam 95.4 0.44 9.6E-06 51.4 15.4 105 2-110 201-328 (352)
274 KOG1645 RING-finger-containing 95.4 0.047 1E-06 59.1 7.7 86 2-89 201-289 (463)
275 PF00400 WD40: WD domain, G-be 95.3 0.032 6.8E-07 39.6 4.5 32 73-104 3-34 (39)
276 KOG1409 Uncharacterized conser 95.3 0.065 1.4E-06 57.2 8.4 100 8-111 167-268 (404)
277 KOG3914 WD repeat protein WDR4 94.8 0.063 1.4E-06 57.9 6.8 93 13-111 129-221 (390)
278 PF10282 Lactonase: Lactonase, 94.8 0.63 1.4E-05 49.2 14.2 98 2-100 44-162 (345)
279 TIGR02658 TTQ_MADH_Hv methylam 94.7 0.74 1.6E-05 49.7 14.8 88 16-107 27-130 (352)
280 PLN02919 haloacid dehalogenase 94.7 0.29 6.3E-06 59.8 13.0 95 2-100 747-877 (1057)
281 PF05769 DUF837: Protein of un 94.7 0.28 6E-06 48.3 10.4 70 505-574 89-176 (181)
282 COG0823 TolB Periplasmic compo 94.6 0.35 7.6E-06 53.4 12.1 96 2-101 245-345 (425)
283 COG4946 Uncharacterized protei 94.4 0.3 6.4E-06 54.2 10.7 94 3-100 410-507 (668)
284 KOG4190 Uncharacterized conser 94.3 0.12 2.5E-06 58.0 7.6 105 5-114 746-861 (1034)
285 KOG2066 Vacuolar assembly/sort 94.3 0.3 6.6E-06 56.8 11.1 86 5-97 82-174 (846)
286 PF04762 IKI3: IKI3 family; I 94.3 0.3 6.4E-06 58.9 11.5 98 2-102 217-325 (928)
287 PF12709 Kinetocho_Slk19: Cent 94.3 0.45 9.7E-06 41.6 9.5 65 510-574 3-72 (87)
288 PF07433 DUF1513: Protein of u 94.2 0.55 1.2E-05 49.7 12.0 99 2-100 12-117 (305)
289 PRK13922 rod shape-determining 94.2 0.38 8.3E-06 49.6 10.8 72 502-574 36-109 (276)
290 KOG1064 RAVE (regulator of V-A 94.1 0.13 2.9E-06 64.2 7.9 102 1-111 2258-2364(2439)
291 KOG1912 WD40 repeat protein [G 94.0 0.26 5.7E-06 57.3 9.6 86 2-91 23-119 (1062)
292 COG2706 3-carboxymuconate cycl 93.9 1.1 2.5E-05 47.9 13.7 110 1-111 197-319 (346)
293 PF14775 NYD-SP28_assoc: Sperm 93.8 0.083 1.8E-06 43.0 3.8 27 548-574 30-56 (60)
294 KOG1275 PAB-dependent poly(A) 93.6 0.33 7.2E-06 57.3 9.8 62 4-69 185-255 (1118)
295 KOG1645 RING-finger-containing 93.6 0.19 4.1E-06 54.6 7.3 72 37-111 193-264 (463)
296 PLN02919 haloacid dehalogenase 93.5 0.62 1.4E-05 57.0 12.4 67 2-70 690-772 (1057)
297 PF06005 DUF904: Protein of un 93.0 0.45 9.8E-06 40.1 7.3 33 536-572 21-53 (72)
298 COG4946 Uncharacterized protei 93.0 1.1 2.3E-05 50.0 12.0 92 3-98 368-460 (668)
299 PF08553 VID27: VID27 cytoplas 92.8 0.66 1.4E-05 54.9 10.8 91 7-100 543-637 (794)
300 KOG4714 Nucleoporin [Nuclear s 92.7 0.1 2.2E-06 54.1 3.4 63 6-69 192-255 (319)
301 KOG1354 Serine/threonine prote 92.6 0.59 1.3E-05 50.2 9.0 98 2-99 33-182 (433)
302 KOG1912 WD40 repeat protein [G 92.6 0.62 1.3E-05 54.4 9.8 82 8-91 81-165 (1062)
303 PF14783 BBS2_Mid: Ciliary BBS 92.5 2.5 5.4E-05 38.6 11.7 91 3-103 11-105 (111)
304 smart00340 HALZ homeobox assoc 92.4 0.14 3E-06 38.8 3.0 21 553-573 14-34 (44)
305 PF08450 SGL: SMP-30/Gluconola 92.2 2.8 6E-05 41.7 13.1 94 2-98 141-242 (246)
306 KOG4532 WD40-like repeat conta 92.2 1.1 2.3E-05 47.0 10.1 67 2-69 211-283 (344)
307 PF10392 COG5: Golgi transport 92.2 0.89 1.9E-05 42.2 8.8 60 507-567 36-95 (132)
308 KOG1354 Serine/threonine prote 92.0 0.26 5.5E-06 52.8 5.6 101 2-103 172-300 (433)
309 KOG1832 HIV-1 Vpr-binding prot 91.9 0.22 4.8E-06 58.6 5.3 108 2-110 1109-1261(1516)
310 KOG4190 Uncharacterized conser 91.8 0.073 1.6E-06 59.6 1.4 68 29-99 728-802 (1034)
311 PF08450 SGL: SMP-30/Gluconola 91.7 2.8 6.1E-05 41.7 12.5 99 2-104 93-205 (246)
312 PF10224 DUF2205: Predicted co 91.7 0.89 1.9E-05 39.2 7.5 42 528-573 18-59 (80)
313 PF08826 DMPK_coil: DMPK coile 91.6 2.1 4.6E-05 35.1 9.3 40 533-572 21-60 (61)
314 KOG1240 Protein kinase contain 91.6 1.4 3E-05 53.8 11.4 101 8-110 1165-1270(1431)
315 PF00930 DPPIV_N: Dipeptidyl p 91.6 0.66 1.4E-05 49.3 8.2 100 3-106 1-125 (353)
316 KOG3617 WD40 and TPR repeat-co 91.4 0.43 9.2E-06 56.1 6.8 93 2-99 23-119 (1416)
317 PF15492 Nbas_N: Neuroblastoma 91.3 3.5 7.5E-05 43.3 12.7 103 1-104 50-170 (282)
318 COG5354 Uncharacterized protei 91.2 0.39 8.4E-06 53.6 6.1 92 1-98 39-148 (561)
319 PF10226 DUF2216: Uncharacteri 91.0 0.64 1.4E-05 45.9 6.7 24 550-573 54-77 (195)
320 COG5354 Uncharacterized protei 91.0 1.1 2.5E-05 50.0 9.4 92 2-100 282-378 (561)
321 PF15492 Nbas_N: Neuroblastoma 90.8 2 4.3E-05 45.0 10.5 85 3-91 6-101 (282)
322 KOG0309 Conserved WD40 repeat- 90.7 0.24 5.1E-06 57.4 4.0 96 2-98 166-262 (1081)
323 PRK14127 cell division protein 90.6 0.49 1.1E-05 43.0 5.2 35 539-573 25-59 (109)
324 PF02897 Peptidase_S9_N: Proly 90.5 4.8 0.0001 43.3 13.7 101 2-105 131-250 (414)
325 PF07798 DUF1640: Protein of u 90.5 2.5 5.3E-05 41.2 10.4 73 497-573 21-95 (177)
326 KOG2079 Vacuolar assembly/sort 90.4 0.8 1.7E-05 55.1 8.0 90 7-98 100-192 (1206)
327 KOG4005 Transcription factor X 90.1 0.37 8E-06 49.1 4.3 29 545-573 91-119 (292)
328 PF15294 Leu_zip: Leucine zipp 90.0 1.6 3.5E-05 45.7 9.0 19 556-574 130-148 (278)
329 smart00320 WD40 WD40 repeats. 89.8 0.32 6.9E-06 31.1 2.6 21 2-22 20-40 (40)
330 KOG1409 Uncharacterized conser 89.6 0.38 8.1E-06 51.6 4.2 66 2-69 205-271 (404)
331 PF14197 Cep57_CLD_2: Centroso 89.4 6 0.00013 33.1 10.3 64 504-572 5-68 (69)
332 TIGR03752 conj_TIGR03752 integ 89.1 0.54 1.2E-05 52.3 5.1 25 549-573 107-131 (472)
333 PRK02888 nitrous-oxide reducta 89.0 3.4 7.3E-05 47.9 11.4 96 2-100 328-450 (635)
334 PF15254 CCDC14: Coiled-coil d 88.8 1.3 2.9E-05 51.7 8.1 76 497-573 394-477 (861)
335 PF07433 DUF1513: Protein of u 88.8 4.2 9.2E-05 43.2 11.2 103 1-104 57-185 (305)
336 KOG0309 Conserved WD40 repeat- 88.7 1.7 3.7E-05 50.7 8.6 90 8-98 83-176 (1081)
337 PF01166 TSC22: TSC-22/dip/bun 88.5 0.57 1.2E-05 37.9 3.5 30 544-573 14-43 (59)
338 KOG3612 PHD Zn-finger protein 88.5 2.2 4.9E-05 48.1 9.3 50 518-567 456-505 (588)
339 PRK02888 nitrous-oxide reducta 88.4 6 0.00013 45.9 12.9 83 15-100 295-393 (635)
340 KOG2066 Vacuolar assembly/sort 88.3 2.4 5.2E-05 49.8 9.7 95 6-115 49-148 (846)
341 TIGR00219 mreC rod shape-deter 88.1 1.3 2.8E-05 46.4 7.0 21 554-574 87-107 (283)
342 PF15397 DUF4618: Domain of un 88.1 5.9 0.00013 41.2 11.5 42 531-572 180-221 (258)
343 TIGR03300 assembly_YfgL outer 87.7 2.9 6.3E-05 44.2 9.5 62 6-70 279-340 (377)
344 KOG4649 PQQ (pyrrolo-quinoline 87.7 7.6 0.00016 40.8 11.9 90 6-98 63-153 (354)
345 COG4026 Uncharacterized protei 87.2 6.5 0.00014 40.1 10.8 72 500-571 103-183 (290)
346 COG1792 MreC Cell shape-determ 86.8 1.5 3.3E-05 45.9 6.6 40 534-574 67-106 (284)
347 KOG2314 Translation initiation 86.8 2.6 5.7E-05 47.8 8.6 95 2-100 453-556 (698)
348 KOG1920 IkappaB kinase complex 86.5 4.4 9.5E-05 49.6 10.7 102 2-106 203-314 (1265)
349 KOG4343 bZIP transcription fac 86.5 1 2.3E-05 50.5 5.3 30 545-574 303-332 (655)
350 PF08553 VID27: VID27 cytoplas 86.5 1.5 3.3E-05 52.0 6.9 58 6-67 588-646 (794)
351 PRK15422 septal ring assembly 86.4 4.5 9.8E-05 34.8 7.9 26 547-572 28-60 (79)
352 COG5170 CDC55 Serine/threonine 86.4 2.1 4.6E-05 45.6 7.2 100 2-104 229-360 (460)
353 TIGR02449 conserved hypothetic 85.6 1.2 2.6E-05 37.0 4.0 23 550-572 6-28 (65)
354 COG5170 CDC55 Serine/threonine 85.3 0.9 1.9E-05 48.3 3.9 97 2-99 180-298 (460)
355 COG4026 Uncharacterized protei 85.2 3.9 8.5E-05 41.6 8.2 69 503-571 76-162 (290)
356 PF10146 zf-C4H2: Zinc finger- 85.2 6.4 0.00014 40.3 9.9 49 525-573 48-103 (230)
357 KOG1064 RAVE (regulator of V-A 85.1 2.9 6.3E-05 53.1 8.5 90 4-98 2218-2307(2439)
358 PRK13616 lipoprotein LpqB; Pro 84.5 7 0.00015 45.1 11.0 90 2-100 357-466 (591)
359 KOG2114 Vacuolar assembly/sort 84.4 6.3 0.00014 46.8 10.4 97 2-100 31-144 (933)
360 PF08961 DUF1875: Domain of un 84.4 0.3 6.6E-06 49.2 0.0 31 540-570 132-162 (243)
361 PF14988 DUF4515: Domain of un 84.2 6.9 0.00015 39.3 9.5 65 509-573 90-171 (206)
362 PF07334 IFP_35_N: Interferon- 84.0 1.4 3.1E-05 37.6 3.9 29 545-573 1-29 (76)
363 PF08700 Vps51: Vps51/Vps67; 83.7 5.1 0.00011 33.9 7.2 55 519-573 19-73 (87)
364 PF13097 CENP-U: CENP-A nucleo 83.7 10 0.00022 37.3 10.1 73 499-574 103-175 (175)
365 COG3490 Uncharacterized protei 83.3 10 0.00022 40.4 10.4 98 1-102 120-246 (366)
366 smart00338 BRLZ basic region l 82.9 3.1 6.6E-05 33.8 5.3 33 542-574 31-63 (65)
367 PF09755 DUF2046: Uncharacteri 82.7 3.2 6.9E-05 44.1 6.7 34 533-573 243-276 (310)
368 KOG4657 Uncharacterized conser 82.6 14 0.00031 37.7 10.9 32 542-573 77-108 (246)
369 PRK13922 rod shape-determining 82.2 4.2 9.1E-05 41.9 7.4 20 553-572 71-90 (276)
370 KOG2395 Protein involved in va 82.2 5.1 0.00011 45.5 8.2 88 10-100 398-490 (644)
371 TIGR01834 PHA_synth_III_E poly 81.9 4.8 0.0001 43.1 7.7 53 518-570 255-315 (320)
372 PF12894 Apc4_WD40: Anaphase-p 81.7 1.9 4E-05 33.4 3.4 28 2-30 19-46 (47)
373 PF12894 Apc4_WD40: Anaphase-p 81.6 3.9 8.4E-05 31.6 5.1 29 40-69 14-42 (47)
374 PRK11546 zraP zinc resistance 81.5 4.7 0.0001 38.4 6.7 37 536-572 71-110 (143)
375 KOG1275 PAB-dependent poly(A) 81.4 9.6 0.00021 45.7 10.4 93 5-104 146-238 (1118)
376 PRK04654 sec-independent trans 81.3 10 0.00022 38.3 9.3 54 513-568 32-85 (214)
377 PF02183 HALZ: Homeobox associ 81.0 2.4 5.3E-05 32.6 3.8 28 546-573 14-41 (45)
378 cd04766 HTH_HspR Helix-Turn-He 80.8 3 6.5E-05 35.9 4.8 18 556-573 70-87 (91)
379 TIGR03300 assembly_YfgL outer 80.7 5 0.00011 42.4 7.5 58 5-65 319-376 (377)
380 PF07798 DUF1640: Protein of u 80.2 21 0.00046 34.7 11.1 63 509-571 85-151 (177)
381 PRK10884 SH3 domain-containing 79.9 11 0.00024 37.9 9.1 7 481-487 78-84 (206)
382 KOG2444 WD40 repeat protein [G 79.8 3 6.4E-05 42.7 5.0 61 6-68 114-177 (238)
383 TIGR03495 phage_LysB phage lys 79.4 25 0.00054 33.3 10.7 41 532-572 56-96 (135)
384 PF06977 SdiA-regulated: SdiA- 79.2 31 0.00068 35.6 12.4 96 2-100 29-136 (248)
385 KOG3156 Uncharacterized membra 78.6 15 0.00033 37.1 9.5 74 497-574 64-139 (220)
386 KOG0995 Centromere-associated 78.6 9.9 0.00021 43.4 9.1 61 512-573 263-323 (581)
387 PF09726 Macoilin: Transmembra 78.5 4.4 9.5E-05 47.7 6.6 53 520-573 423-475 (697)
388 TIGR01837 PHA_granule_1 poly(h 78.4 19 0.0004 33.1 9.4 61 512-572 45-117 (118)
389 KOG0882 Cyclophilin-related pe 78.4 13 0.00029 41.5 9.8 97 3-99 62-162 (558)
390 smart00503 SynN Syntaxin N-ter 77.9 18 0.00039 31.8 9.0 62 508-570 12-76 (117)
391 KOG4451 Uncharacterized conser 77.7 18 0.00039 37.1 9.7 63 511-573 50-121 (286)
392 COG3386 Gluconolactonase [Carb 77.7 26 0.00057 37.2 11.6 94 2-99 170-273 (307)
393 PRK00888 ftsB cell division pr 77.7 3.1 6.7E-05 37.4 4.0 30 542-571 32-61 (105)
394 KOG2395 Protein involved in va 77.7 4 8.6E-05 46.3 5.6 58 7-67 442-499 (644)
395 PF12234 Rav1p_C: RAVE protein 77.6 29 0.00063 40.6 12.7 89 10-99 45-146 (631)
396 PF10647 Gmad1: Lipoprotein Lp 77.6 47 0.001 33.9 13.2 95 2-102 31-132 (253)
397 PF13591 MerR_2: MerR HTH fami 77.5 3.7 8E-05 35.2 4.3 38 534-572 47-84 (84)
398 PF05377 FlaC_arch: Flagella a 77.5 3.5 7.7E-05 33.2 3.8 23 548-570 11-33 (55)
399 COG3391 Uncharacterized conser 77.4 35 0.00075 36.9 12.8 98 2-102 123-227 (381)
400 PF13360 PQQ_2: PQQ-like domai 77.3 14 0.0003 35.8 8.9 66 5-74 35-100 (238)
401 PRK13616 lipoprotein LpqB; Pro 77.1 14 0.00031 42.7 10.2 89 2-96 404-511 (591)
402 PF02183 HALZ: Homeobox associ 76.8 8.3 0.00018 29.7 5.6 27 547-573 8-34 (45)
403 KOG3617 WD40 and TPR repeat-co 76.7 2.4 5.1E-05 50.3 3.7 65 2-68 67-131 (1416)
404 KOG4196 bZIP transcription fac 76.6 3.2 7E-05 38.8 3.9 24 550-573 80-103 (135)
405 KOG2041 WD40 repeat protein [G 76.6 2.3 4.9E-05 49.6 3.5 94 2-98 79-173 (1189)
406 PF13942 Lipoprotein_20: YfhG 76.5 14 0.00031 36.3 8.3 68 506-574 79-146 (179)
407 PF00170 bZIP_1: bZIP transcri 76.1 8.6 0.00019 31.1 5.9 32 541-572 30-61 (64)
408 PF14197 Cep57_CLD_2: Centroso 75.5 10 0.00022 31.8 6.2 43 531-573 17-62 (69)
409 PF06156 DUF972: Protein of un 75.4 20 0.00043 32.5 8.6 37 531-571 20-56 (107)
410 KOG3119 Basic region leucine z 75.3 12 0.00026 39.0 8.2 34 540-573 218-251 (269)
411 PF07569 Hira: TUP1-like enhan 75.2 12 0.00026 37.7 8.0 27 3-29 19-45 (219)
412 PF10313 DUF2415: Uncharacteri 75.1 10 0.00022 29.1 5.6 30 40-69 3-34 (43)
413 PF04762 IKI3: IKI3 family; I 74.8 32 0.0007 41.9 12.7 90 2-94 264-361 (928)
414 PF10211 Ax_dynein_light: Axon 74.5 45 0.00098 33.0 11.6 21 554-574 166-186 (189)
415 cd00179 SynN Syntaxin N-termin 74.0 28 0.00061 32.1 9.6 61 508-569 10-73 (151)
416 PRK03100 sec-independent trans 73.8 10 0.00023 35.8 6.6 37 532-568 30-67 (136)
417 KOG0980 Actin-binding protein 73.8 45 0.00098 40.2 12.9 48 525-572 353-400 (980)
418 PF04751 DUF615: Protein of un 73.5 8.4 0.00018 37.2 6.0 76 496-573 56-131 (157)
419 KOG4640 Anaphase-promoting com 73.3 12 0.00025 43.3 7.9 66 41-111 24-90 (665)
420 PRK05255 hypothetical protein; 72.8 11 0.00024 36.9 6.7 77 495-573 66-142 (171)
421 KOG0977 Nuclear envelope prote 72.4 21 0.00046 40.8 9.8 32 542-573 153-184 (546)
422 PF14645 Chibby: Chibby family 72.2 4 8.6E-05 37.5 3.3 23 550-572 70-92 (116)
423 PRK15422 septal ring assembly 72.2 45 0.00098 28.8 9.4 40 535-574 30-73 (79)
424 PF00804 Syntaxin: Syntaxin; 72.2 26 0.00056 29.7 8.3 58 510-568 13-73 (103)
425 PF00038 Filament: Intermediat 72.1 27 0.00059 36.3 10.0 64 509-572 167-230 (312)
426 KOG2991 Splicing regulator [RN 72.0 12 0.00025 39.0 6.9 58 516-573 247-307 (330)
427 PRK13169 DNA replication intia 72.0 10 0.00022 34.6 5.9 37 531-571 20-56 (110)
428 KOG3621 WD40 repeat-containing 71.8 4.6 9.9E-05 46.9 4.4 66 3-69 85-155 (726)
429 KOG2629 Peroxisomal membrane a 71.7 58 0.0013 34.6 12.0 62 512-573 126-190 (300)
430 TIGR00219 mreC rod shape-deter 71.7 5.8 0.00013 41.6 4.9 21 548-568 88-108 (283)
431 PF07716 bZIP_2: Basic region 71.6 8 0.00017 30.4 4.5 23 550-572 31-53 (54)
432 KOG2391 Vacuolar sorting prote 71.6 18 0.00038 39.1 8.4 54 507-570 210-265 (365)
433 COG3386 Gluconolactonase [Carb 71.3 41 0.0009 35.7 11.2 84 19-103 144-234 (307)
434 PF06005 DUF904: Protein of un 71.3 12 0.00027 31.6 5.8 23 550-572 24-46 (72)
435 PRK14872 rod shape-determining 71.2 7 0.00015 42.2 5.4 16 555-570 61-76 (337)
436 PF14916 CCDC92: Coiled-coil d 71.2 8.4 0.00018 31.6 4.6 21 551-571 21-41 (60)
437 KOG2114 Vacuolar assembly/sort 71.0 30 0.00066 41.4 10.7 91 4-95 74-185 (933)
438 PF12126 DUF3583: Protein of u 70.8 28 0.0006 36.9 9.4 61 512-572 28-89 (324)
439 PF06305 DUF1049: Protein of u 70.8 4.4 9.5E-05 32.8 3.0 22 550-571 47-68 (68)
440 PF00930 DPPIV_N: Dipeptidyl p 70.7 61 0.0013 34.4 12.4 99 4-102 245-348 (353)
441 KOG1832 HIV-1 Vpr-binding prot 70.6 8.1 0.00018 46.3 6.0 73 28-103 1093-1166(1516)
442 PF10647 Gmad1: Lipoprotein Lp 70.6 80 0.0017 32.2 12.8 99 2-100 73-184 (253)
443 TIGR02268 Myxococcus xanthus p 70.4 3.6 7.8E-05 43.5 3.0 26 548-573 135-160 (295)
444 PF02050 FliJ: Flagellar FliJ 70.1 35 0.00077 29.3 8.9 59 512-570 27-85 (123)
445 PF11577 NEMO: NF-kappa-B esse 69.7 50 0.0011 27.7 9.0 61 502-567 5-68 (68)
446 PF08961 DUF1875: Domain of un 69.7 1.5 3.2E-05 44.4 0.0 33 540-572 125-157 (243)
447 COG3937 Uncharacterized conser 69.7 21 0.00047 32.4 7.3 50 523-572 43-104 (108)
448 PF07676 PD40: WD40-like Beta 69.6 19 0.00041 25.7 5.8 25 41-65 12-38 (39)
449 PF12711 Kinesin-relat_1: Kine 69.6 8.7 0.00019 33.7 4.7 20 553-572 46-65 (86)
450 PRK00888 ftsB cell division pr 69.5 9.3 0.0002 34.4 5.0 27 547-573 30-56 (105)
451 KOG4797 Transcriptional regula 69.4 9.6 0.00021 34.7 5.0 30 544-573 67-96 (123)
452 PRK10265 chaperone-modulator p 69.2 7.4 0.00016 34.6 4.3 28 543-573 70-97 (101)
453 PF13360 PQQ_2: PQQ-like domai 69.2 30 0.00064 33.4 9.0 55 14-71 1-57 (238)
454 KOG0447 Dynamin-like GTP bindi 69.2 8.5 0.00018 44.1 5.7 37 538-574 231-267 (980)
455 PF11594 Med28: Mediator compl 69.2 21 0.00045 32.5 7.1 40 529-569 14-53 (106)
456 KOG2129 Uncharacterized conser 68.1 18 0.00038 40.1 7.6 37 538-574 265-301 (552)
457 PHA02557 22 prohead core prote 68.1 43 0.00094 35.1 10.1 68 503-573 91-170 (271)
458 PF07028 DUF1319: Protein of u 67.4 17 0.00038 33.9 6.4 44 526-569 42-85 (126)
459 KOG2211 Predicted Golgi transp 67.4 25 0.00055 41.1 9.0 59 514-573 85-143 (797)
460 PF09712 PHA_synth_III_E: Poly 67.2 34 0.00074 36.2 9.5 69 502-572 217-293 (293)
461 PRK00708 sec-independent trans 67.1 15 0.00033 37.1 6.5 21 510-530 40-60 (209)
462 PF05266 DUF724: Protein of un 67.0 43 0.00093 33.3 9.6 66 498-564 84-151 (190)
463 PRK11138 outer membrane biogen 67.0 45 0.00097 35.8 10.6 27 6-32 256-282 (394)
464 PF15390 DUF4613: Domain of un 67.0 43 0.00093 38.8 10.6 113 2-115 64-197 (671)
465 PF02646 RmuC: RmuC family; I 67.0 33 0.00072 36.3 9.4 60 501-565 3-62 (304)
466 smart00338 BRLZ basic region l 66.9 10 0.00023 30.7 4.4 27 546-572 28-54 (65)
467 COG3391 Uncharacterized conser 66.8 1.4E+02 0.003 32.3 14.4 94 3-100 82-178 (381)
468 PF04053 Coatomer_WDAD: Coatom 66.7 14 0.00031 41.2 6.9 57 6-68 117-173 (443)
469 COG3074 Uncharacterized protei 66.7 56 0.0012 27.7 8.6 16 557-572 45-60 (79)
470 PF14362 DUF4407: Domain of un 66.6 26 0.00056 36.6 8.5 61 512-572 102-163 (301)
471 PRK13723 conjugal transfer pil 66.6 30 0.00065 38.9 9.3 74 498-573 361-434 (451)
472 PF04841 Vps16_N: Vps16, N-ter 66.1 40 0.00087 37.0 10.1 51 17-71 62-112 (410)
473 PRK10115 protease 2; Provision 66.0 78 0.0017 37.3 13.0 98 2-102 134-243 (686)
474 KOG3119 Basic region leucine z 65.8 14 0.00031 38.4 6.3 28 547-574 218-245 (269)
475 KOG2444 WD40 repeat protein [G 65.5 23 0.0005 36.4 7.4 87 6-96 70-160 (238)
476 PF04977 DivIC: Septum formati 65.5 9.5 0.00021 31.4 4.0 30 541-570 21-50 (80)
477 PF07989 Microtub_assoc: Micro 65.3 29 0.00063 29.5 6.9 29 546-574 38-66 (75)
478 PF12808 Mto2_bdg: Micro-tubul 65.2 10 0.00022 30.2 3.9 26 547-572 25-50 (52)
479 cd07307 BAR The Bin/Amphiphysi 64.9 90 0.002 28.7 11.0 20 530-549 98-117 (194)
480 PF11715 Nup160: Nucleoporin N 64.7 25 0.00054 39.6 8.5 68 5-72 157-252 (547)
481 COG3490 Uncharacterized protei 64.3 33 0.00071 36.7 8.4 91 10-100 84-180 (366)
482 PF13801 Metal_resist: Heavy-m 64.2 38 0.00082 29.2 7.9 42 531-572 64-108 (125)
483 TIGR03752 conj_TIGR03752 integ 64.2 13 0.00028 41.8 5.8 28 547-574 112-139 (472)
484 cd08044 TAF5_NTD2 TAF5_NTD2 is 64.1 32 0.0007 31.8 7.7 62 501-564 7-73 (133)
485 KOG3915 Transcription regulato 64.1 83 0.0018 35.5 11.8 80 481-567 486-569 (641)
486 PF11598 COMP: Cartilage oligo 63.7 24 0.00051 27.4 5.5 29 538-566 9-37 (45)
487 PF10186 Atg14: UV radiation r 63.7 63 0.0014 32.9 10.6 73 501-574 35-107 (302)
488 PF15188 CCDC-167: Coiled-coil 63.5 23 0.00051 31.0 6.1 32 538-569 37-68 (85)
489 PF00170 bZIP_1: bZIP transcri 63.4 14 0.0003 29.9 4.5 18 550-567 46-63 (64)
490 PHA02713 hypothetical protein; 63.3 40 0.00088 38.5 9.9 113 17-136 433-555 (557)
491 PRK09413 IS2 repressor TnpA; R 63.3 17 0.00037 33.0 5.6 25 548-572 75-99 (121)
492 PF04977 DivIC: Septum formati 63.2 25 0.00053 28.9 6.1 23 550-572 23-45 (80)
493 PF13801 Metal_resist: Heavy-m 63.2 18 0.00039 31.3 5.6 13 533-545 59-71 (125)
494 PF14655 RAB3GAP2_N: Rab3 GTPa 63.1 39 0.00084 37.6 9.3 36 3-38 316-351 (415)
495 COG2433 Uncharacterized conser 63.0 17 0.00037 41.9 6.6 30 542-571 427-456 (652)
496 PF02344 Myc-LZ: Myc leucine z 62.9 11 0.00023 27.2 3.1 18 554-571 4-21 (32)
497 PF02897 Peptidase_S9_N: Proly 62.5 1.7E+02 0.0036 31.5 14.0 68 2-69 177-261 (414)
498 TIGR02894 DNA_bind_RsfA transc 62.5 23 0.00049 34.5 6.5 21 551-571 111-131 (161)
499 PF12711 Kinesin-relat_1: Kine 62.4 6.7 0.00015 34.3 2.6 6 566-571 52-57 (86)
500 PF10186 Atg14: UV radiation r 62.1 74 0.0016 32.4 10.7 74 500-574 27-100 (302)
No 1
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-51 Score=428.61 Aligned_cols=498 Identities=26% Similarity=0.309 Sum_probs=367.9
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
+|+++++|||+++..|.|+|+.+.++.....|....++.++.|.|++..+.+|.+++++|.|.+||+.+..++..+...|
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H 207 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH 207 (673)
T ss_pred EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence 58999999999999999999999999998899877788889999999999999999999999999999988888899999
Q ss_pred CCCeEEEEEcCCCCEE-EEEEecCCcCEEEecc-------------CC------CcceeEecccCCCeEeccCCC----C
Q 008196 81 SAPTAGISFSSDDKAV-SSLCWQRAKPVFIDET-------------TC------KAETALLGGAVGDSILMPDPL----P 136 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~L-aS~sWD~sg~viv~e~-------------~~------s~e~aLlg~~~~dsVi~PDPl----p 136 (574)
..+...|||+|....| ++.++|+. +++++. .. .....+..+...+-++..|.. |
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkk--i~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKK--INIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred cCCcCcceecCCccceEEEecccce--EEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 9999999999977654 45555532 222221 11 012233334444444444422 1
Q ss_pred CCccccc-cc--------c-cccCC---------CCCCCCC---CCCCcccccccCCCCcCCCCcccCCCCCCccccccC
Q 008196 137 SVTTSSV-SL--------S-TAVSG---------SRPNSRS---GPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAP 194 (574)
Q Consensus 137 s~t~ss~-ss--------s-ts~~~---------~~SS~~~---~s~g~~sS~~~~st~e~tPsr~~~~~~G~ls~~~~p 194 (574)
..+.+.- .+ + +.... ..++.-. +.++-+...-+....|++| +.++|+.+++.++++-
T Consensus 286 v~v~sah~~sVt~vafq~s~tvltkssln~G~~~~~~~vn~~s~~~~aat~g~rNsgiVe~aP-~~~l~~s~p~~~lsa~ 364 (673)
T KOG4378|consen 286 VAVRSAHDASVTRVAFQPSPTVLTKSSLNSGDNQQNGSVNSSSNATGAATEGPRNSGIVERAP-SDELRKSIPANLLSAQ 364 (673)
T ss_pred ceEeeecccceeEEEeeecceeeeccccccCccCCCceeccccccccccCCCCccccchhcCc-hhhhhhccCchhhhhh
Confidence 1111100 00 0 00000 0000000 0011112233456689999 6899999999999999
Q ss_pred CCCCCCCCccccccccccCCCCCCcccccCCCCCCCc-CCCCCCcCCCCccccCCCCCCCCccCCCCCcccccc-ccCCC
Q 008196 195 RSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAK-KDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFD-WKSSS 272 (574)
Q Consensus 195 ~~~~~~~~~~~vfSPl~d~~~~~~s~~~~w~~~~g~~-~d~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~ 272 (574)
+.+.+..++|.+|+|++++..+.. |.+..|.. +|.+.+|-++| ++ .+.. -||+| |.+-.
T Consensus 365 ~~~ts~~~~~~g~p~iI~~ds~~k-----~~Ds~G~n~~d~~~~d~g~S-S~----------gD~f---sPIrDD~~~~n 425 (673)
T KOG4378|consen 365 NQLTSLGYGVSGTPTIIRRDSFCK-----FLDSQGPNAVDRMSTDLGAS-SY----------GDSF---SPIRDDWETLN 425 (673)
T ss_pred ccccccccCccCCCceeehhhhhh-----hhhccCCccccceeeccCcc-cc----------cccC---CccccchhhcC
Confidence 999999999999999999888877 88888865 68888888885 22 1111 16664 43221
Q ss_pred CccCcccccccccCCCCCCCCCCCCCCCCCCccccccccchhhhhcccCCCCCCccccccCccccccccccccccccccc
Q 008196 273 TSKQDDARSFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPLNMPSRYGMSTSSGLTSSSMYSGLQDVSLSQ 352 (574)
Q Consensus 273 ~~~~~~~~s~~~~~~t~~~~~~~~~~~~t~p~a~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (574)
- |.++..++ | |++| +|..+...--.|.|-. +.++++|++.|+|.+.| ....
T Consensus 426 ~--------------------K~~d~~~~--k---Gd~f--~f~p~~ns~fsp~~n~-V~Ss~ttS~~~~spl~d-f~~s 476 (673)
T KOG4378|consen 426 R--------------------KPQDYETA--K---GDRF--SFCPPVNSGFSPVDNS-VNSSTTTSLQRNSPLKD-FSNS 476 (673)
T ss_pred C--------------------CCCchhcc--c---cCcc--ccccccccCCCcccCc-ccccccchhhccCcccc-ccCC
Confidence 1 44555555 2 5766 3333322222255554 56668999999999999 5555
Q ss_pred cccccccCCccccccccccccccccccCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCcCCCCCCCCCcchhhhcc
Q 008196 353 TSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGILGSGNLDSSRPSSLTLTHREPRRTYAERIS 432 (574)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (574)
++.--..+..+.++.. ++.+.++|+++ +.+.. +.++.++++.+..|+++. +.+ +++|+ |++|+++|.
T Consensus 477 ~G~~~~~n~~lt~e~~--~~~s~~~e~~s----d~~~~---s~kl~t~gv~a~gn~~~~-~lS-N~TRn--s~~~~~~i~ 543 (673)
T KOG4378|consen 477 SGDGKLMNIALTDELC--EEQSANIEVAS----DTGGG---SDKLNTPGVDAEGNRRLR-LLS-NATRN--STPHHANIT 543 (673)
T ss_pred CCcchhhcccccchHH--HHhhcceeeec----cCCCC---cccccCCCCCCccccccc-ccc-ccccc--CCcccccCC
Confidence 5655555555555544 57788888883 33332 236899999888888886 444 99999 999999999
Q ss_pred ccCCCccccCCCCCcCCchhhHHHHhhhhccccCccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 008196 433 TTSGTSLSVGSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINGGMSQSLKSPQPDPPQGSNFTLQLFQRTLEET 512 (574)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 512 (574)
+++--.+=.++|++||++.+ .|.....+.+.|..+.+++.+-|.... +.+-.+-..|++|+||++++++
T Consensus 544 ~~s~~~~L~~~p~i~ksss~----------n~p~~~~a~~ag~~s~l~~~v~qs~~~-~~q~~~~~~fs~q~~q~~~~~t 612 (673)
T KOG4378|consen 544 PQSSNPLLKPQPLIAKSSSG----------NLPAQMDADWAGEFSELRDFVDQSCEK-VEQELEYVTFSNQRLQANKMTT 612 (673)
T ss_pred CcccCccccCCcccccCCCC----------CCchhhhhhhhhhhHHHHHHHHhhhhh-HHhhcccchhHHHHHHHHhhhh
Confidence 99944444599999999996 277888889999999999998887766 4466678999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 513 LDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 513 l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
||+||.++|+|||||||||||||||+.+||+.+++.|.|++. |++|+|.||||||+||+.+
T Consensus 613 lddfq~~~hrdirNl~~ell~Qfhm~~~Ems~llery~eNe~-l~aelk~lreenq~lr~~~ 673 (673)
T KOG4378|consen 613 LDDFQVENHRDIRNLALELLLQFHMFMREMSRLLERYNENEM-LKAELKFLREENQTLRCGE 673 (673)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhhhhhhccC
Confidence 999999999999999999999999999999999999999888 9999999999999999864
No 2
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.55 E-value=3e-14 Score=144.18 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=135.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
.++||++.++++.|+++++||+.+|+..+.|.+|...| .+++|++|.++ |++|+.|++|++|++.+.+.+...-..|.
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dV-lsva~s~dn~q-ivSGSrDkTiklwnt~g~ck~t~~~~~~~ 148 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDV-LSVAFSTDNRQ-IVSGSRDKTIKLWNTLGVCKYTIHEDSHR 148 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCce-EEEEecCCCce-eecCCCcceeeeeeecccEEEEEecCCCc
Confidence 47899999999999999999999999999999999888 77799999866 99999999999999988654433334447
Q ss_pred CCeEEEEEcCC--CCEEEEEEecCCcCEEEeccCCCcceeEecccCCC--eEeccCCCCCCcccccccccccCCCCCCCC
Q 008196 82 APTAGISFSSD--DKAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD--SILMPDPLPSVTTSSVSLSTAVSGSRPNSR 157 (574)
Q Consensus 82 ~~VtSVaFSPD--G~~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~d--sVi~PDPlps~t~ss~sssts~~~~~SS~~ 157 (574)
+.|.||+|+|+ .-+|++++||+..++ |+-.++.-...++|....- +.+.||..-+. +
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKv-Wnl~~~~l~~~~~gh~~~v~t~~vSpDGslca---------------s--- 209 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKV-WNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCA---------------S--- 209 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEE-EccCCcchhhccccccccEEEEEECCCCCEEe---------------c---
Confidence 89999999998 789999999986654 4555676666666543332 33344332221 0
Q ss_pred CCCCCcccccccCCCCcCCCCcccCCCCCCccccccCCCCCCCCCcccccccccc-CCCCCCcccccCCCCCCCcCCCCC
Q 008196 158 SGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVD-VQPITPSLDKLWDGHEGAKKDHLP 236 (574)
Q Consensus 158 ~~s~g~~sS~~~~st~e~tPsr~~~~~~G~ls~~~~p~~~~~~~~~~~vfSPl~d-~~~~~~s~~~~w~~~~g~~~d~~~ 236 (574)
++..| ..-.++....+. +++-.++. .--.-+|||=.- --+++.+..|.||..+++..++|+
T Consensus 210 Ggkdg-~~~LwdL~~~k~---------------lysl~a~~--~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 210 GGKDG-EAMLWDLNEGKN---------------LYSLEAFD--IVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELK 271 (315)
T ss_pred CCCCc-eEEEEEccCCce---------------eEeccCCC--eEeeEEecCCceeEeeccCCceEEEeccchhhhhhcc
Confidence 11111 111122211111 22211110 112248999111 123666779999999999999999
Q ss_pred CcCC
Q 008196 237 IDKK 240 (574)
Q Consensus 237 ~~~~ 240 (574)
+|-.
T Consensus 272 ~d~~ 275 (315)
T KOG0279|consen 272 LDGI 275 (315)
T ss_pred cccc
Confidence 8853
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=5.1e-14 Score=147.26 Aligned_cols=262 Identities=16% Similarity=0.155 Sum_probs=158.1
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+|+|.+|++|+.|.++++||+.+.....++++|.+.| .||+|+|||+. ||+|+.||+|++||..+.+..-..+.+|.
T Consensus 123 fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WV-lcvawsPDgk~-iASG~~dg~I~lwdpktg~~~g~~l~gH~ 200 (480)
T KOG0271|consen 123 FSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWV-LCVAWSPDGKK-IASGSKDGSIRLWDPKTGQQIGRALRGHK 200 (480)
T ss_pred ecCCCceEEecCCCceEEeeccCCCCcceeecCCccEE-EEEEECCCcch-hhccccCCeEEEecCCCCCcccccccCcc
Confidence 89999999999999999999999999999999999888 88899999955 99999999999999977777778899999
Q ss_pred CCeEEEEEcC-----CCCEEEEEEecCCcCEEEeccCC----------Cc---------ceeEecccCCCeEeccCCCCC
Q 008196 82 APTAGISFSS-----DDKAVSSLCWQRAKPVFIDETTC----------KA---------ETALLGGAVGDSILMPDPLPS 137 (574)
Q Consensus 82 ~~VtSVaFSP-----DG~~LaS~sWD~sg~viv~e~~~----------s~---------e~aLlg~~~~dsVi~PDPlps 137 (574)
.+|++++|.| .+++|++++-| +.+.+|+... .. +-.+..+..+..|-|++-+..
T Consensus 201 K~It~Lawep~hl~p~~r~las~skD--g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKD--GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred cceeEEeecccccCCCccceecccCC--CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccch
Confidence 9999999974 67888886533 3333332221 11 222223344445666665431
Q ss_pred Cc-ccccccccccCCCC-CCCCC-CCCCcccccccCCCC-------------------cCCCCc-----ccCCCCCCccc
Q 008196 138 VT-TSSVSLSTAVSGSR-PNSRS-GPSAEASSLTVGGTG-------------------EETPQR-----SYLRPGGPLAR 190 (574)
Q Consensus 138 ~t-~ss~sssts~~~~~-SS~~~-~s~g~~sS~~~~st~-------------------e~tPsr-----~~~~~~G~ls~ 190 (574)
.. +.-..=+..+.... ++-.+ .++++...-....+. |..-+- .-+|.+-..-+
T Consensus 279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 10 00000011111100 00000 011111111110000 111110 11444322221
Q ss_pred cccCCCCCCCCCccccccccccCCC-CCCcccc---cCCCCCCCcCCCCCCcCCCCccc-cCCCCCCCCccCCCCCcccc
Q 008196 191 LHAPRSSYNFKDDMEVFSPLVDVQP-ITPSLDK---LWDGHEGAKKDHLPIDKKPSSML-FPSSSRRFPYAEDGSNEHSV 265 (574)
Q Consensus 191 ~~~p~~~~~~~~~~~vfSPl~d~~~-~~~s~~~---~w~~~~g~~~d~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~ 265 (574)
..+-...-..--.-..||| |... ++.|-|| |||+.+|.-.-.|-+|+-+=--+ | +++-|+.+....+.-..+
T Consensus 359 pi~rmtgHq~lVn~V~fSP--d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw-saDsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 359 PITRMTGHQALVNHVSFSP--DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW-SADSRLLVSGSKDSTLKV 435 (480)
T ss_pred chhhhhchhhheeeEEECC--CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe-ccCccEEEEcCCCceEEE
Confidence 1100000000001138999 7777 4555555 99999999999998887442234 7 777788888888888888
Q ss_pred ccccC
Q 008196 266 FDWKS 270 (574)
Q Consensus 266 ~~~~~ 270 (574)
||-++
T Consensus 436 w~V~t 440 (480)
T KOG0271|consen 436 WDVRT 440 (480)
T ss_pred EEeee
Confidence 88764
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.50 E-value=4.3e-14 Score=157.59 Aligned_cols=100 Identities=21% Similarity=0.329 Sum_probs=91.4
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|+|+.+|+|+||.|.+|++||+.+|..++.|.||++.| .+|+|+|+| ++|++|+.||.|+|||+.+. ..+..+.+|
T Consensus 542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V-~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~-~~v~~l~~H 618 (707)
T KOG0263|consen 542 SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV-TALAFSPCG-RYLASGDEDGLIKIWDLANG-SLVKQLKGH 618 (707)
T ss_pred EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce-EEEEEcCCC-ceEeecccCCcEEEEEcCCC-cchhhhhcc
Confidence 389999999999999999999999999999999999888 888999999 55999999999999999774 355678999
Q ss_pred CCCeEEEEEcCCCCEEEEEEecC
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
.+.|.+|.|+.||.+|++++-|.
T Consensus 619 t~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 619 TGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred cCceeEEEEecCCCEEEecCCCC
Confidence 99999999999999999987554
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.49 E-value=6.3e-14 Score=147.85 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=96.3
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|++||.+++||+.|..-+|||+++|.++-.+.+|-..| ..|+|+|+| +.|+|||.|++++|||++.... +.++.+|
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I-~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~-ly~ipAH 386 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEI-LSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE-LYTIPAH 386 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcEEEEecccccce-eeEeECCCc-eEEeecCCCCcEEEeeeccccc-ceecccc
Confidence 489999999999999999999999999999999999888 566999999 8899999999999999977543 6789999
Q ss_pred CCCeEEEEEcC-CCCEEEEEEecCCcCEEEec
Q 008196 81 SAPTAGISFSS-DDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 81 ~~~VtSVaFSP-DG~~LaS~sWD~sg~viv~e 111 (574)
.+.|+.|+|+| .|++|+|+++|...+++...
T Consensus 387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred cchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 99999999998 78899999999766654433
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.48 E-value=8.3e-14 Score=146.98 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=95.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+|+|.+||||+.|++++|||++.-.+++++.+|.+-| ..|+|+|+..++|+||+.|++++||...+ +.++..+.||.
T Consensus 353 fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlV-S~Vk~~p~~g~fL~TasyD~t~kiWs~~~-~~~~ksLaGHe 430 (459)
T KOG0272|consen 353 FSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLV-SQVKYSPQEGYFLVTASYDNTVKIWSTRT-WSPLKSLAGHE 430 (459)
T ss_pred ECCCceEEeecCCCCcEEEeeecccccceecccccchh-hheEecccCCeEEEEcccCcceeeecCCC-cccchhhcCCc
Confidence 89999999999999999999999888899999998777 77799996669999999999999999987 45667899999
Q ss_pred CCeEEEEEcCCCCEEEEEEecCCcCEE
Q 008196 82 APTAGISFSSDDKAVSSLCWQRAKPVF 108 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~sg~vi 108 (574)
..|.++++++|+.+|++++||+.-+.+
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeec
Confidence 999999999999999999999876653
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=8.5e-14 Score=145.61 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=90.6
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|+||++|||+++-|..|++||-.+|+.+..|++|-..|+.+ +|+.|. +||++|+.|.++++||+.++ .+...+.+|
T Consensus 374 ~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqv-awsaDs-RLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh 450 (480)
T KOG0271|consen 374 SFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQV-AWSADS-RLLVSGSKDSTLKVWDVRTK-KLKQDLPGH 450 (480)
T ss_pred EECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEE-EeccCc-cEEEEcCCCceEEEEEeeee-eecccCCCC
Confidence 499999999999999999999999999999999999999555 999997 88999999999999999884 455678999
Q ss_pred CCCeEEEEEcCCCCEEEEEEec
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD 102 (574)
.+.|+++.|+|||..++++.-|
T Consensus 451 ~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 451 ADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred CceEEEEEecCCCceeecCCCc
Confidence 9999999999999999988644
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=3.6e-13 Score=149.82 Aligned_cols=105 Identities=22% Similarity=0.436 Sum_probs=92.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC----------
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---------- 71 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~---------- 71 (574)
|+|||++||+|+.||.|+|||..+|.|+.+|..|+..+ ..++|+..| +.+++.|.||+|+.||+....
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V-t~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV-TAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCce-EEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 79999999999999999999999999999999999988 888999998 679999999999999983210
Q ss_pred ---------------------------------ceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEE
Q 008196 72 ---------------------------------PKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVF 108 (574)
Q Consensus 72 ---------------------------------~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~vi 108 (574)
.++..+.||.++|.+++|+|++..|++++||+..+++
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 0123567999999999999999999999999876653
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=4.4e-13 Score=146.28 Aligned_cols=106 Identities=27% Similarity=0.407 Sum_probs=94.6
Q ss_pred CccCCCCEEEEEeCCCcEEEEEC-CCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 1 MYNCKDEHLASISLSGDLILHNL-ASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl-~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
.|+++|+++++|+.|++|+|||+ ..+.++.++++|...+ .+++|+|+| .++++|+.|++|+|||+.+ ...+..+.+
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v-~~~~f~p~g-~~i~Sgs~D~tvriWd~~~-~~~~~~l~~ 286 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYV-TSVAFSPDG-NLLVSGSDDGTVRIWDVRT-GECVRKLKG 286 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCce-EEEEecCCC-CEEEEecCCCcEEEEeccC-CeEEEeeec
Confidence 48999999999999999999999 5568899999999888 777999999 8899999999999999987 456678999
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
|.+.|.+++|++++..|+++++| +.+.+|+
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d--~~i~vwd 316 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYD--GTIRVWD 316 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCC--ccEEEEE
Confidence 99999999999999999999764 5555555
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.43 E-value=4.9e-13 Score=149.31 Aligned_cols=96 Identities=19% Similarity=0.264 Sum_probs=89.2
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+|-|-|+||++.|++.++|.......++.|.+|...+ .|++|+|+. .|+++||.|++|++||+... ..++.+.||.
T Consensus 501 F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV-~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~ 577 (707)
T KOG0263|consen 501 FAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDV-DCVSFHPNS-NYVATGSSDRTVRLWDVSTG-NSVRIFTGHK 577 (707)
T ss_pred ecCCceEEEecCCCceeeeeecccCCchhhhccccccc-ceEEECCcc-cccccCCCCceEEEEEcCCC-cEEEEecCCC
Confidence 89999999999999999999999999999999999999 999999997 77999999999999999663 4567899999
Q ss_pred CCeEEEEEcCCCCEEEEEE
Q 008196 82 APTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~s 100 (574)
++|.+|+|||+|++|+++.
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGD 596 (707)
T ss_pred CceEEEEEcCCCceEeecc
Confidence 9999999999999999965
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.37 E-value=4.3e-12 Score=128.75 Aligned_cols=108 Identities=16% Similarity=0.224 Sum_probs=89.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCC-CCeEEEEEEccCC-CeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~-~~Vvs~LafSPdG-r~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
|++|.+.|++|+.|.+|++||. .|.+..++..+. ...+.||+|+|.. ..+|++++.|++||+||+.+. .....+.+
T Consensus 113 ~s~dn~qivSGSrDkTiklwnt-~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~g 190 (315)
T KOG0279|consen 113 FSTDNRQIVSGSRDKTIKLWNT-LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIG 190 (315)
T ss_pred ecCCCceeecCCCcceeeeeee-cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhcccc
Confidence 7899999999999999999999 577777777554 5666999999984 477999999999999999884 45567889
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccC
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETT 113 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~ 113 (574)
|...|+.+++||||...+++. ++++.++++.+
T Consensus 191 h~~~v~t~~vSpDGslcasGg--kdg~~~LwdL~ 222 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGSLCASGG--KDGEAMLWDLN 222 (315)
T ss_pred ccccEEEEEECCCCCEEecCC--CCceEEEEEcc
Confidence 999999999999999998864 45555555533
No 12
>PTZ00421 coronin; Provisional
Probab=99.37 E-value=5.1e-12 Score=139.65 Aligned_cols=106 Identities=17% Similarity=0.324 Sum_probs=89.0
Q ss_pred ccC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce
Q 008196 2 YNC-KDEHLASISLSGDLILHNLASG-------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (574)
Q Consensus 2 FSp-DG~~LASGS~DGtVrIWDl~Tg-------~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l 73 (574)
|+| ++++|++|+.|++|+|||+.++ ..+..+.+|...| .+|+|+|++..+|++|+.|++|+|||+... ..
T Consensus 83 fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V-~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~ 160 (493)
T PTZ00421 83 FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKV-GIVSFHPSAMNVLASAGADMVVNVWDVERG-KA 160 (493)
T ss_pred EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcE-EEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eE
Confidence 788 8899999999999999999765 2467788888777 788999987678999999999999999764 34
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 74 VSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 74 l~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
+..+.+|...|.+++|+|+|..|+++++|+ .+.+++
T Consensus 161 ~~~l~~h~~~V~sla~spdG~lLatgs~Dg--~IrIwD 196 (493)
T PTZ00421 161 VEVIKCHSDQITSLEWNLDGSLLCTTSKDK--KLNIID 196 (493)
T ss_pred EEEEcCCCCceEEEEEECCCCEEEEecCCC--EEEEEE
Confidence 557889999999999999999999998664 343444
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=2.6e-11 Score=132.42 Aligned_cols=103 Identities=23% Similarity=0.306 Sum_probs=90.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~--~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
|+++|+++++++.|+.|++|+...+. .+..+.+|...| ..++|+|++ .++++++.|++|+|||+......+.++.+
T Consensus 167 fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v-~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 167 FSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGV-SDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EcCCCCeEEEccCCCcEEEeecccccchhhccccccccce-eeeEECCCC-cEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 89999999999999999999997777 677777787777 777999999 56999999999999999554566778999
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCCcC
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
|...|++++|+|+|+.|+++++|...+
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVR 271 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEE
Confidence 999999999999999999998775433
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=4.6e-11 Score=121.00 Aligned_cols=109 Identities=21% Similarity=0.285 Sum_probs=88.9
Q ss_pred ccCC-CCEEEEEeCCCcEEEEECCC---CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC-CCCCceeEE
Q 008196 2 YNCK-DEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRSPKVSW 76 (574)
Q Consensus 2 FSpD-G~~LASGS~DGtVrIWDl~T---g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl-~~~~~ll~t 76 (574)
|+|. |..||+|+.|..|+||+... ..+...+.+.+..-++.|+|+|.| ++|++|+.|.++.||.- .+....+..
T Consensus 22 whp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efecv~~ 100 (312)
T KOG0645|consen 22 WHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFECVAT 100 (312)
T ss_pred eccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecCCCceeEEee
Confidence 6777 88999999999999999974 344555554444444888999999 57999999999999986 344456778
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccC
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETT 113 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~ 113 (574)
+.||...|.||+|+++|.+|++++ +++-+++++..
T Consensus 101 lEGHEnEVK~Vaws~sG~~LATCS--RDKSVWiWe~d 135 (312)
T KOG0645|consen 101 LEGHENEVKCVAWSASGNYLATCS--RDKSVWIWEID 135 (312)
T ss_pred eeccccceeEEEEcCCCCEEEEee--CCCeEEEEEec
Confidence 999999999999999999999998 66677777654
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.26 E-value=2.3e-11 Score=124.22 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=92.1
Q ss_pred ccC-CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee-EEecc
Q 008196 2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-SWLKQ 79 (574)
Q Consensus 2 FSp-DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll-~tl~g 79 (574)
++| +++.+++|+.|+..+|||++.+.++..|.+|...| ..|+|.|+| .-+++|++|+++++||++..+.+. +.-..
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI-Nsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a~ys~~~ 271 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI-NSVRFFPSG-DAFATGSDDATCRLYDLRADQELAVYSHDS 271 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcceeEeeccccccc-ceEEEccCC-CeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence 356 89999999999999999999999999999999999 677999999 559999999999999997654332 22223
Q ss_pred CCCCeEEEEEcCCCCEEEEE-------EecCCcC-EEEeccCCCcceeEecccCCCeE
Q 008196 80 HSAPTAGISFSSDDKAVSSL-------CWQRAKP-VFIDETTCKAETALLGGAVGDSI 129 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~-------sWD~sg~-viv~e~~~s~e~aLlg~~~~dsV 129 (574)
-..+|++|+||..|++|+.+ .||.-+. .+-.-......+..++...++..
T Consensus 272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcE
Confidence 34568889999888888873 4553222 11111123455555655555543
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.25 E-value=1.5e-11 Score=129.74 Aligned_cols=131 Identities=16% Similarity=0.245 Sum_probs=101.6
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|+|++..|++++.||+|+|||..-.+....+.+|...| .+|+|+|.. .+|++||.|..|++||.++.. ++.++.+|
T Consensus 187 afSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdV-ksvdWHP~k-gLiasgskDnlVKlWDprSg~-cl~tlh~H 263 (464)
T KOG0284|consen 187 AFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDV-KSVDWHPTK-GLIASGSKDNLVKLWDPRSGS-CLATLHGH 263 (464)
T ss_pred ccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCc-ceeccCCcc-ceeEEccCCceeEeecCCCcc-hhhhhhhc
Confidence 389999999999999999999998888888999998888 888999995 889999999999999997743 34578999
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCcceeEecccCCC-eEeccCCCC
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD-SILMPDPLP 136 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~d-sVi~PDPlp 136 (574)
+..|..+.|++++.+|++++-|. .+.+.+.....|....-++-++ ..+.+.|+.
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~--~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQ--SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCc--eEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 99999999999999999998554 3223332233344433333333 334455553
No 17
>PTZ00420 coronin; Provisional
Probab=99.23 E-value=2.2e-10 Score=128.61 Aligned_cols=105 Identities=16% Similarity=0.274 Sum_probs=83.3
Q ss_pred ccCC-CCEEEEEeCCCcEEEEECCCCc--------eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCc
Q 008196 2 YNCK-DEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (574)
Q Consensus 2 FSpD-G~~LASGS~DGtVrIWDl~Tg~--------~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ 72 (574)
|+|+ +++||+|+.|+.|+|||+.++. .+..+.+|...| .+|+|+|++..+|++++.|++|+|||+.....
T Consensus 82 fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V-~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~ 160 (568)
T PTZ00420 82 FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI-SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR 160 (568)
T ss_pred EcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE-EEEEECCCCCeEEEEEeCCCeEEEEECCCCcE
Confidence 7886 7899999999999999997642 244677887777 78899999877788999999999999976443
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 73 KVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 73 ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
+..+. |...|.+++|+++|.+|++++.| +.+.+++
T Consensus 161 -~~~i~-~~~~V~SlswspdG~lLat~s~D--~~IrIwD 195 (568)
T PTZ00420 161 -AFQIN-MPKKLSSLKWNIKGNLLSGTCVG--KHMHIID 195 (568)
T ss_pred -EEEEe-cCCcEEEEEECCCCCEEEEEecC--CEEEEEE
Confidence 23343 56789999999999999988744 3444444
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.21 E-value=1.5e-10 Score=124.03 Aligned_cols=200 Identities=19% Similarity=0.239 Sum_probs=134.1
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCc---------
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--------- 72 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~--------- 72 (574)
||.+|.+||+|+.||.++||+. .|..+.++..|++.| ..|.|+-+| .+|++++.|+++.|||......
T Consensus 243 Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI-~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 243 WNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPI-FSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred ecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCce-EEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 8899999999999999999999 788999999999998 566999999 5599999999999999843211
Q ss_pred -------------------------------eeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCcceeEe
Q 008196 73 -------------------------------KVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALL 121 (574)
Q Consensus 73 -------------------------------ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aLl 121 (574)
.+.++.+|...|.+|.|+|.|..|++++.|..-+++ .. ....-...+
T Consensus 320 ~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW-s~-~~~~~~~~l 397 (524)
T KOG0273|consen 320 PALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW-SM-GQSNSVHDL 397 (524)
T ss_pred CccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee-ec-CCCcchhhh
Confidence 124667899999999999999999999866544432 22 111111222
Q ss_pred cccCCC-eEeccCCCCCCcccccccccccCCCCCCCCCCCCCcccccccCCCCcCCCCcccCCCCCCccccccCCCCCCC
Q 008196 122 GGAVGD-SILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNF 200 (574)
Q Consensus 122 g~~~~d-sVi~PDPlps~t~ss~sssts~~~~~SS~~~~s~g~~sS~~~~st~e~tPsr~~~~~~G~ls~~~~p~~~~~~ 200 (574)
..+..+ ..+-|.|.-+.+ +++|.|
T Consensus 398 ~~Hskei~t~~wsp~g~v~----------------------------------------~n~~~~--------------- 422 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVT----------------------------------------SNPNMN--------------- 422 (524)
T ss_pred hhhccceeeEeecCCCCcc----------------------------------------CCCcCC---------------
Confidence 222222 223333322211 011111
Q ss_pred CCccccccccccCCCCCCcccccCCCCCCCcCCCCCCcCCCCccc-cCCCCCCCCccCCCCCccccccccCC
Q 008196 201 KDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPSSML-FPSSSRRFPYAEDGSNEHSVFDWKSS 271 (574)
Q Consensus 201 ~~~~~vfSPl~d~~~~~~s~~~~w~~~~g~~~d~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~ 271 (574)
....+=..| |-+++||..+|...-.|..|.+|=.+| | +...|+.+.++-+.-..||+-|++
T Consensus 423 ---~~l~sas~d------stV~lwdv~~gv~i~~f~kH~~pVysvaf-S~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 423 ---LMLASASFD------STVKLWDVESGVPIHTLMKHQEPVYSVAF-SPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred ---ceEEEeecC------CeEEEEEccCCceeEeeccCCCceEEEEe-cCCCcEEEecCCCCeeEeccccch
Confidence 111122223 445678888887766677777776677 7 666777777777777777777654
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.20 E-value=1.1e-10 Score=124.91 Aligned_cols=107 Identities=22% Similarity=0.344 Sum_probs=91.1
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCC--------CeEEEEEeCCCcEEEEeCCCCCc
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS--------RHLLVTAGDDGTLHLWDTTGRSP 72 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdG--------r~LLaSgS~DGtVrLWDl~~~~~ 72 (574)
.|+|.|.+|++++.|++++||+...+.+++.+..|...+ ..+.|+|.| ...|++++.|++|++||+... .
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei-~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v 443 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI-YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-V 443 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccce-eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-c
Confidence 389999999999999999999998899999999999888 555999965 246899999999999999774 4
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 73 KVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 73 ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.+..+..|..+|.+|+|+|+|+++++++.| +.+.++.
T Consensus 444 ~i~~f~kH~~pVysvafS~~g~ylAsGs~d--g~V~iws 480 (524)
T KOG0273|consen 444 PIHTLMKHQEPVYSVAFSPNGRYLASGSLD--GCVHIWS 480 (524)
T ss_pred eeEeeccCCCceEEEEecCCCcEEEecCCC--CeeEecc
Confidence 556788999999999999999999998744 4444444
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=1.3e-10 Score=121.30 Aligned_cols=99 Identities=22% Similarity=0.287 Sum_probs=87.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccC--------------CCeEEEEEeCCCcEEEEeCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN--------------SRHLLVTAGDDGTLHLWDTT 68 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPd--------------Gr~LLaSgS~DGtVrLWDl~ 68 (574)
+.||.++|+++.|.+|++|-+.+++|...++.|...+ .|++|.|. +.+++++++.|++||+||+.
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v-Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV-ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhhhhhhccccce-EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc
Confidence 4689999999999999999999999999999988777 99999883 23689999999999999997
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecC
Q 008196 69 GRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 69 ~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
+ +.++.++.+|..+|..++|+|.|++|+++..|+
T Consensus 323 t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 323 T-GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK 356 (406)
T ss_pred C-CeEEEEEecccceeeeeEEcCCCeEEEEEecCC
Confidence 7 356779999999999999999999999976443
No 21
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=6.3e-12 Score=129.56 Aligned_cols=103 Identities=20% Similarity=0.364 Sum_probs=85.8
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecC-------CCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD-------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~g-------h~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l 73 (574)
.|+|||+||++|+.||-|.|||..+|+....++. ..+..+.|+.|+.|. .+|++|+.||.|++|.+.+..++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecchHH
Confidence 4999999999999999999999999987554441 123444999999997 77999999999999999765444
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEEecCC
Q 008196 74 VSWLKQHSAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 74 l~tl~gH~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
...-.+|...|+|+.|+.|+..|+++++|..
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t 329 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQT 329 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccce
Confidence 4444699999999999999999999988754
No 22
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=3.5e-11 Score=135.41 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=78.2
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCC--------------------------------C----------------------
Q 008196 1 MYNCKDEHLASISLSGDLILHNLAS--------------------------------G---------------------- 26 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~T--------------------------------g---------------------- 26 (574)
.|++||+|||+||.||.|+||.+.. .
T Consensus 274 KFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~ 353 (712)
T KOG0283|consen 274 KFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLK 353 (712)
T ss_pred EeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCc
Confidence 4999999999999999999998754 0
Q ss_pred ------ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEE
Q 008196 27 ------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKAVSSL 99 (574)
Q Consensus 27 ------~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSP-DG~~LaS~ 99 (574)
+.++.|.+|.+.| ..|.|+-++ +|++++.|.|||||++....++ ....|.+.|+||+|+| |.++++++
T Consensus 354 ~f~f~ekP~~ef~GHt~DI-LDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL--~~F~HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 354 AFVFSEKPFCEFKGHTADI-LDLSWSKNN--FLLSSSMDKTVRLWHPGRKECL--KVFSHNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred cccccccchhhhhccchhh-eecccccCC--eeEeccccccEEeecCCCccee--eEEecCCeeEEEEecccCCCcEeec
Confidence 0123455888888 666999874 6999999999999999764433 3578999999999997 67899997
Q ss_pred Eec
Q 008196 100 CWQ 102 (574)
Q Consensus 100 sWD 102 (574)
+-|
T Consensus 429 SLD 431 (712)
T KOG0283|consen 429 SLD 431 (712)
T ss_pred ccc
Confidence 633
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=1.5e-10 Score=120.88 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=86.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeE
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~Vt 85 (574)
+.++++++.|++|++||+.+|.|+.++.+|.+.| +.++|+|.| +||+++.+|+++++||+.... ....+..|..-|+
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV-r~~af~p~G-kyi~ScaDDktlrvwdl~~~~-cmk~~~ah~hfvt 380 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV-RGVAFSPGG-KYILSCADDKTLRVWDLKNLQ-CMKTLEAHEHFVT 380 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEeccccee-eeeEEcCCC-eEEEEEecCCcEEEEEeccce-eeeccCCCcceeE
Confidence 4699999999999999999999999999999888 888999999 669999999999999997743 3446779999999
Q ss_pred EEEEcCCCCEEEEEEecCCcC
Q 008196 86 GISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 86 SVaFSPDG~~LaS~sWD~sg~ 106 (574)
+++|+.+.-++++++-|...+
T Consensus 381 ~lDfh~~~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 381 SLDFHKTAPYVVTGSVDQTVK 401 (406)
T ss_pred EEecCCCCceEEeccccceee
Confidence 999999988999988665443
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=4.5e-10 Score=113.92 Aligned_cols=109 Identities=17% Similarity=0.349 Sum_probs=96.3
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCC--ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC--CCCceeEE
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT--GRSPKVSW 76 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg--~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~--~~~~ll~t 76 (574)
.|+|.|+|||+|+-|.++.||.-..+ +++.++.+|.+.| .|++|+++| .|||+|+.|+.|-||.+. ........
T Consensus 68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEV-K~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEV-KCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccce-eEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 38999999999999999999987654 6789999999999 999999999 679999999999999995 33345667
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
++.|...|..+.|+|.-..|+++++|...+++..+
T Consensus 146 L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 146 LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred eccccccccEEEEcCCcceeEEeccCCeEEEEeec
Confidence 99999999999999999999999999887776655
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.16 E-value=3.5e-10 Score=122.53 Aligned_cols=101 Identities=21% Similarity=0.381 Sum_probs=87.9
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEec---CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCc-----
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP----- 72 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~---gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~----- 72 (574)
.|+|||+++|+.+.||+|.|||-.+|+.+..+. +|++.| ..|+|+||+.+ +++++.|.++||||+.....
T Consensus 197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI-falsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI-FALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE-EEEEECCCCce-EEEecCCceEEEEEeeccceEEEee
Confidence 389999999999999999999999999999998 788888 77799999966 99999999999999853321
Q ss_pred -------------------------------------eeEEeccCCCCeEEEEEcCCCCEEEEEEecC
Q 008196 73 -------------------------------------KVSWLKQHSAPTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 73 -------------------------------------ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
.+..+.+|...|+++..++|+.+|+++++|.
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 0135678999999999999999999988664
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.15 E-value=3.2e-10 Score=126.46 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=89.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
++|++++|||||.|.+++||++..+..+.++.+|+..+ .||.|++.. ++++|+|.|++||||.+... -++.++.||.
T Consensus 471 ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGv-w~V~Fs~~d-q~laT~SgD~TvKIW~is~f-SClkT~eGH~ 547 (775)
T KOG0319|consen 471 IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGV-WCVSFSKND-QLLATCSGDKTVKIWSISTF-SCLKTFEGHT 547 (775)
T ss_pred ecCCCceEEecccccceeeecccCceEEEEeeCCccce-EEEEecccc-ceeEeccCCceEEEEEeccc-eeeeeecCcc
Confidence 57899999999999999999999999999999999988 788999986 88999999999999999874 4567899999
Q ss_pred CCeEEEEEcCCCCEEEEEEec
Q 008196 82 APTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD 102 (574)
..|..+.|-.+|+.|++++-|
T Consensus 548 ~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCC
Confidence 999999999999999996633
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=2.1e-10 Score=114.65 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=91.2
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.||-||+|+++++.|.+|++||...|.++.++.+|...| ..++.+.|+.+ +++|+.|+.|.+||+.+. ...+.+.+|
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EV-lD~~~s~Dnsk-f~s~GgDk~v~vwDV~TG-kv~Rr~rgH 100 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEV-LDAALSSDNSK-FASCGGDKAVQVWDVNTG-KVDRRFRGH 100 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeeeecCCCcee-eeccccccccc-cccCCCCceEEEEEcccC-eeeeecccc
Confidence 389999999999999999999999999999999998888 55588888755 999999999999999874 466789999
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCCcC
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
.+.|+.|.|+.+...++++++|...+
T Consensus 101 ~aqVNtV~fNeesSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVASGSFDSSVR 126 (307)
T ss_pred cceeeEEEecCcceEEEeccccceeE
Confidence 99999999999999999988775433
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.14 E-value=8.8e-11 Score=122.17 Aligned_cols=129 Identities=22% Similarity=0.318 Sum_probs=102.8
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~ 82 (574)
..|.+||++++.|.+|++|++.++++++++.+|+..+ .|++|. | +++++|+.|.+|++||+... .++..++||..
T Consensus 327 dfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGI-AClQYr--~-rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEe 401 (499)
T KOG0281|consen 327 DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI-ACLQYR--D-RLVVSGSSDNTIRLWDIECG-ACLRVLEGHEE 401 (499)
T ss_pred ccccceEEEecCCceEEEEeccceeeehhhhcccccc-eehhcc--C-eEEEecCCCceEEEEecccc-HHHHHHhchHH
Confidence 3477899999999999999999999999999999888 776664 3 78999999999999999773 45667999999
Q ss_pred CeEEEEEcCCCCEEEEEEecCCcCEEEeccC----------C---------------CcceeEecccCCCeEeccCCCCC
Q 008196 83 PTAGISFSSDDKAVSSLCWQRAKPVFIDETT----------C---------------KAETALLGGAVGDSILMPDPLPS 137 (574)
Q Consensus 83 ~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~----------~---------------s~e~aLlg~~~~dsVi~PDPlps 137 (574)
-|.||.| |.+.|+++.+|+..+++--... | -.++..+...+++.+++||.+..
T Consensus 402 LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 402 LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred hhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 9999999 6789999888765443211000 0 13556677788889999998854
Q ss_pred C
Q 008196 138 V 138 (574)
Q Consensus 138 ~ 138 (574)
.
T Consensus 480 ~ 480 (499)
T KOG0281|consen 480 P 480 (499)
T ss_pred C
Confidence 4
No 29
>PTZ00421 coronin; Provisional
Probab=99.14 E-value=1.1e-09 Score=121.42 Aligned_cols=107 Identities=16% Similarity=0.271 Sum_probs=87.5
Q ss_pred ccCCC-CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG-~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|+|++ ++|++|+.|+.|+|||+.+++.+..+.+|...+ .+|+|+|+| .+|++++.|++|+|||+.... .+..+.+|
T Consensus 133 f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V-~sla~spdG-~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H 209 (493)
T PTZ00421 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQI-TSLEWNLDG-SLLCTTSKDKKLNIIDPRDGT-IVSSVEAH 209 (493)
T ss_pred eCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCce-EEEEEECCC-CEEEEecCCCEEEEEECCCCc-EEEEEecC
Confidence 78875 699999999999999999999999999888777 788999998 669999999999999997643 45567788
Q ss_pred CCC-eEEEEEcCCCCEEEEEEecC--CcCEEEec
Q 008196 81 SAP-TAGISFSSDDKAVSSLCWQR--AKPVFIDE 111 (574)
Q Consensus 81 ~~~-VtSVaFSPDG~~LaS~sWD~--sg~viv~e 111 (574)
... +..+.|.+++..|++++++. ++.+.+|+
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 765 45678999988898877653 34455554
No 30
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=1.8e-10 Score=129.71 Aligned_cols=94 Identities=16% Similarity=0.297 Sum_probs=81.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeE
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~Vt 85 (574)
.++|+++++|.+|+||++...+|++.|. |.+.| +||+|+|..++|+++||.||.|+||++... ..+.|..-| +-|+
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfV-TcVaFnPvDDryFiSGSLD~KvRiWsI~d~-~Vv~W~Dl~-~lIT 455 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFV-TCVAFNPVDDRYFISGSLDGKVRLWSISDK-KVVDWNDLR-DLIT 455 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEe-cCCee-EEEEecccCCCcEeecccccceEEeecCcC-eeEeehhhh-hhhe
Confidence 4599999999999999999999999998 66555 999999977788999999999999999774 344555555 6899
Q ss_pred EEEEcCCCCEEEEEEecC
Q 008196 86 GISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 86 SVaFSPDG~~LaS~sWD~ 103 (574)
+|||+|||++.+.+++++
T Consensus 456 Avcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 456 AVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred eEEeccCCceEEEEEecc
Confidence 999999999999998764
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.12 E-value=5.8e-10 Score=114.11 Aligned_cols=95 Identities=19% Similarity=0.277 Sum_probs=86.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEcc-CCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCC
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSP-dGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~ 83 (574)
|+.+|++++.|.++.+||+++|+.+..|.+|.+.| .+|+++| ++ +.+++|+.|+..+|||++.. ..++.+.+|...
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV-~slsl~p~~~-ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesD 231 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV-MSLSLSPSDG-NTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESD 231 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecCCcccE-EEEecCCCCC-CeEEecccccceeeeeccCc-ceeEeecccccc
Confidence 46789999999999999999999999999999999 6779999 66 66999999999999999774 567789999999
Q ss_pred eEEEEEcCCCCEEEEEEec
Q 008196 84 TAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 84 VtSVaFSPDG~~LaS~sWD 102 (574)
|++|+|.|+|..|++++-|
T Consensus 232 INsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDD 250 (343)
T ss_pred cceEEEccCCCeeeecCCC
Confidence 9999999999999998744
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.11 E-value=2.4e-10 Score=122.68 Aligned_cols=106 Identities=18% Similarity=0.285 Sum_probs=92.9
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
+|+.+|..|.+++-|+.|++||+++|.++..|. .+.+..|+.|+|++.+++++|+.|+.|+.||++... .++.+..|
T Consensus 265 ~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~h 341 (503)
T KOG0282|consen 265 SFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRH 341 (503)
T ss_pred hccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhh
Confidence 589999999999999999999999999988876 556669999999998899999999999999998853 56678889
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
-+.|..|.|-++|+++++.+-|. .+++|+
T Consensus 342 Lg~i~~i~F~~~g~rFissSDdk--s~riWe 370 (503)
T KOG0282|consen 342 LGAILDITFVDEGRRFISSSDDK--SVRIWE 370 (503)
T ss_pred hhheeeeEEccCCceEeeeccCc--cEEEEE
Confidence 99999999999999999998554 555555
No 33
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.11 E-value=5e-10 Score=117.58 Aligned_cols=94 Identities=31% Similarity=0.538 Sum_probs=75.7
Q ss_pred ccCCC-CEEEEEeCCCcEEEEECCCC---ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC--CceeE
Q 008196 2 YNCKD-EHLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPKVS 75 (574)
Q Consensus 2 FSpDG-~~LASGS~DGtVrIWDl~Tg---~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~--~~ll~ 75 (574)
|+|.. ..||+|++||.|+|||++.+ .++.. +.|...| .+|.|+..- .||++|++||+++|||++.. ...+.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV-NVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV-NVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce-eeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcce
Confidence 56654 48999999999999999988 34444 6787777 888999986 48999999999999999532 23466
Q ss_pred EeccCCCCeEEEEEcCCCCEEEE
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSS 98 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS 98 (574)
.++-|..+|+||.|+|...-++.
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred eEEeccCCeeEEEeccccCceEE
Confidence 78999999999999986554444
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.11 E-value=2.4e-10 Score=127.38 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=92.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+++++++||+|.|++|+||.+.+..|+.+|.||...|.++ .|-.+|++ |++|+.||-||||++.+. .++..+.+|.
T Consensus 513 Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra-~F~~~~~q-liS~~adGliKlWnikt~-eC~~tlD~H~ 589 (775)
T KOG0319|consen 513 FSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA-SFIRNGKQ-LISAGADGLIKLWNIKTN-ECEMTLDAHN 589 (775)
T ss_pred eccccceeEeccCCceEEEEEeccceeeeeecCccceeEee-eeeeCCcE-EEeccCCCcEEEEeccch-hhhhhhhhcc
Confidence 89999999999999999999999999999999999999887 89998856 999999999999999774 3456899999
Q ss_pred CCeEEEEEcCCCCEEEEEEecCCcCEEEe
Q 008196 82 APTAGISFSSDDKAVSSLCWQRAKPVFID 110 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~sg~viv~ 110 (574)
+.||+++-++...++++++.| +.++.+
T Consensus 590 DrvWaL~~~~~~~~~~tgg~D--g~i~~w 616 (775)
T KOG0319|consen 590 DRVWALSVSPLLDMFVTGGGD--GRIIFW 616 (775)
T ss_pred ceeEEEeecCccceeEecCCC--eEEEEe
Confidence 999999999999999998744 554444
No 35
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.11 E-value=6.4e-10 Score=118.57 Aligned_cols=107 Identities=15% Similarity=0.277 Sum_probs=87.0
Q ss_pred CCEEEEEeCCCcEEEEECCC--CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCC
Q 008196 6 DEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~T--g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~ 83 (574)
..+|++++.|+.+.|||+++ .+......+|.+.+ .||+|+|.+..+||+|+.|++|+|||++.....+..+.+|.+.
T Consensus 240 ~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v-n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de 318 (422)
T KOG0264|consen 240 EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV-NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE 318 (422)
T ss_pred hhhheeecCCCeEEEEEcCCCCCCCcccccccCCce-eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence 45889999999999999994 45566777788778 8889999988999999999999999998777778899999999
Q ss_pred eEEEEEcCCCCEEEEEEecCCcCEEEeccCC
Q 008196 84 TAGISFSSDDKAVSSLCWQRAKPVFIDETTC 114 (574)
Q Consensus 84 VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~ 114 (574)
|.+|.|+|....++..+. .++.+.+|+...
T Consensus 319 v~~V~WSPh~etvLASSg-~D~rl~vWDls~ 348 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSG-TDRRLNVWDLSR 348 (422)
T ss_pred eEEEEeCCCCCceeEecc-cCCcEEEEeccc
Confidence 999999998765554332 345555555443
No 36
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=8.4e-10 Score=118.64 Aligned_cols=97 Identities=26% Similarity=0.334 Sum_probs=83.3
Q ss_pred ccCCCC-EEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~-~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|+++++ .|++|++|+.+++||+.++.....+.+|++.| +|.+|+|..+++++|||+||+|++||++.....+ ....|
T Consensus 118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV-R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v-~elnh 195 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV-RCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV-VELNH 195 (487)
T ss_pred ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCccee-EeeccccCCCeEEEecCCCceEEEEEeccCCcee-EEecC
Confidence 677665 77889999999999998888777889999888 9999999988999999999999999997643332 34578
Q ss_pred CCCeEEEEEcCCCCEEEEEE
Q 008196 81 SAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~s 100 (574)
..+|..|.|-|.|..|++++
T Consensus 196 g~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAG 215 (487)
T ss_pred CCceeeEEEcCCCCEEEEcC
Confidence 88999999999999999964
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.09 E-value=4.2e-10 Score=117.52 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=94.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
+.|..++|++|+.|++|+|||+.+|+...++.+|...+ +.|++++-. .||++|+.|+.|+.||+..+ ..++.+.||-
T Consensus 159 vdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~v-r~vavS~rH-pYlFs~gedk~VKCwDLe~n-kvIR~YhGHl 235 (460)
T KOG0285|consen 159 VDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETV-RGVAVSKRH-PYLFSAGEDKQVKCWDLEYN-KVIRHYHGHL 235 (460)
T ss_pred eCCCceeEEecCCCceeEEEEcccCeEEEeecchhhee-eeeeecccC-ceEEEecCCCeeEEEechhh-hhHHHhcccc
Confidence 56778899999999999999999999999999998877 888999987 56999999999999999764 3455788999
Q ss_pred CCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCcceeEecc
Q 008196 82 APTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALLGG 123 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aLlg~ 123 (574)
..|.|++.+|.-..|++++-| ....+|+......+..+.+
T Consensus 236 S~V~~L~lhPTldvl~t~grD--st~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 236 SGVYCLDLHPTLDVLVTGGRD--STIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ceeEEEeccccceeEEecCCc--ceEEEeeecccceEEEecC
Confidence 999999999999999997633 3333444333344443433
No 38
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.09 E-value=4.1e-10 Score=119.83 Aligned_cols=98 Identities=18% Similarity=0.273 Sum_probs=83.5
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|+|||.+|++|..|+.|+|||+..+..+..|.+|.+.| ..|+|+.+| ++|+++++|+.|++||++............
T Consensus 354 ~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v-k~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV-KAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred eEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce-eEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 489999999999999999999999999999999999888 888999998 999999999999999996533222122233
Q ss_pred CCCeEEEEEcCCCCEEEEEE
Q 008196 81 SAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~s 100 (574)
...|.+++|...|.+|+.++
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred cccceeEEEcCCCCeEEeec
Confidence 34799999999999999875
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.08 E-value=5.7e-10 Score=112.26 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=86.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCc---------
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--------- 72 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~--------- 72 (574)
|..||+++++|+.||+|+|||++.-.+.+.++ |...| .+|..+|+... |++|..+|.|++||+.....
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spV-n~vvlhpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPV-NTVVLHPNQTE-LISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCc-ceEEecCCcce-EEeecCCCcEEEEEccCCccccccCCCCC
Confidence 78899999999999999999998866666665 45555 77788998645 88889999999999843210
Q ss_pred ---------------------------------------eeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccC
Q 008196 73 ---------------------------------------KVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETT 113 (574)
Q Consensus 73 ---------------------------------------ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~ 113 (574)
.+..+++|..-+..+.||||+++|++++-|+..+++..+..
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 11346678888899999999999999887765555433322
Q ss_pred CCcceeEecc
Q 008196 114 CKAETALLGG 123 (574)
Q Consensus 114 ~s~e~aLlg~ 123 (574)
++.|..+.++
T Consensus 248 ~kle~~l~gh 257 (311)
T KOG0315|consen 248 FKLELVLTGH 257 (311)
T ss_pred eeeEEEeecC
Confidence 2444444433
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.08 E-value=1.4e-09 Score=109.53 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=94.4
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCc------eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEE
Q 008196 3 NCKDEHLASISLSGDLILHNLASGA------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW 76 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~------~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~t 76 (574)
.+||.+++.+..-|.+.+|++.... .+..|+.|.+-+.+| .||||+ ++|++++.|.+|+||++.+.......
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C-~lSPd~-k~lat~ssdktv~iwn~~~~~kle~~ 253 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC-LLSPDV-KYLATCSSDKTVKIWNTDDFFKLELV 253 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEE-EECCCC-cEEEeecCCceEEEEecCCceeeEEE
Confidence 5799999999999999999997643 356778888888788 899998 55999999999999999886445567
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCcceeEecccCC
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALLGGAVG 126 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~ 126 (574)
+++|..+|+..+||.||++|++++-| ....+|+.....++....++.+
T Consensus 254 l~gh~rWvWdc~FS~dg~YlvTassd--~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 254 LTGHQRWVWDCAFSADGEYLVTASSD--HTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred eecCCceEEeeeeccCccEEEecCCC--CceeecccccCceeeecCCccc
Confidence 89999999999999999999998855 3344444334344443344443
No 41
>PTZ00420 coronin; Provisional
Probab=99.08 E-value=2.5e-09 Score=120.10 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=83.1
Q ss_pred ccCCCCE-EEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKDEH-LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~~-LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|+|++.+ |++++.|++|+|||+.+++.+..+. |...+ .+|+|+|+| .+|++++.|+.|+|||++... .+..+.+|
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V-~SlswspdG-~lLat~s~D~~IrIwD~Rsg~-~i~tl~gH 208 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKL-SSLKWNIKG-NLLSGTCVGKHMHIIDPRKQE-IASSFHIH 208 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcE-EEEEECCCC-CEEEEEecCCEEEEEECCCCc-EEEEEecc
Confidence 8898875 5799999999999999998877776 44455 888999999 568999999999999998743 45578889
Q ss_pred CCCe-----EEEEEcCCCCEEEEEEecCCc--CEEEec
Q 008196 81 SAPT-----AGISFSSDDKAVSSLCWQRAK--PVFIDE 111 (574)
Q Consensus 81 ~~~V-----tSVaFSPDG~~LaS~sWD~sg--~viv~e 111 (574)
.+.+ +...|++++.+|++++++... .+.+|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWD 246 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWD 246 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEE
Confidence 8754 334466899999998888642 344454
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.07 E-value=1.5e-10 Score=122.33 Aligned_cols=108 Identities=12% Similarity=0.174 Sum_probs=95.5
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
+|++++++|++++.|..|+|+|+++.+.+..+++|+..+ .++.|+|....|+.+||.||.|.+|.+....++...-.+|
T Consensus 271 ~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv-~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH 349 (464)
T KOG0284|consen 271 KFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDV-TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH 349 (464)
T ss_pred EEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhh-eeeccccccccceeeccCCCceEEEeccccccccCCCccc
Confidence 489999999999999999999999889999999999888 7779999988999999999999999997555665566889
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCCcCEEE
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRAKPVFI 109 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~sg~viv 109 (574)
...|++++|+|-|.+|++++-|++.+.+.
T Consensus 350 d~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 350 DGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ccceeeeeccccceeEeecCCCcceeeec
Confidence 99999999999999999988665554433
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.06 E-value=6e-10 Score=118.01 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=81.2
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCce---eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEec
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~---l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~ 78 (574)
|+++|+|||+++.|.+.+||++..... ..++.+|...| ..|.|+||.++ |++|+.|-.+.+||+.+.........
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V-~yi~wSPDdry-LlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPV-SYIMWSPDDRY-LLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCce-EEEEECCCCCe-EEecCchHheeeccCCcchhhhhccc
Confidence 899999999999999999999865433 77888999888 56699999855 77777888899999976555544456
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE
Q 008196 79 QHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~s 100 (574)
+|...+.+++|.|||..+++++
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs 331 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGS 331 (519)
T ss_pred CcCCCcceeEEccCCceeEecC
Confidence 6778899999999999999965
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.04 E-value=2.4e-09 Score=101.06 Aligned_cols=99 Identities=25% Similarity=0.410 Sum_probs=84.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|++++++|++++.|+.|++||+..++.+..+..|...+ .+++|++++ .++++++.|+.|++||+... .....+..|.
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~ 261 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV-NSVAFSPDG-YLLASGSEDGTIRVWDLRTG-ECVQTLSGHT 261 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCce-EEEEEcCCC-cEEEEEcCCCcEEEEEcCCc-eeEEEccccC
Confidence 78899999999999999999999888888887777666 778999995 77888888999999999753 3445677899
Q ss_pred CCeEEEEEcCCCCEEEEEEecC
Q 008196 82 APTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
..|.+++|++++..|++++.|.
T Consensus 262 ~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 262 NSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred CcEEEEEECCCCCEEEEecCCC
Confidence 9999999999999999988664
No 45
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.02 E-value=2.2e-09 Score=110.35 Aligned_cols=101 Identities=19% Similarity=0.325 Sum_probs=80.1
Q ss_pred ccC-CCCEEEEEeCCCcEEEEECCC-CceeE-EecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEec
Q 008196 2 YNC-KDEHLASISLSGDLILHNLAS-GAKAA-ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 2 FSp-DG~~LASGS~DGtVrIWDl~T-g~~l~-t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~ 78 (574)
|+| ...+++.|+.|++||+|++.. |..+. ....|.+.+ .+++|+.|| ..+++|+.|+.+++||+.+. .+..+.
T Consensus 35 FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~Pv-L~v~Wsddg-skVf~g~~Dk~~k~wDL~S~--Q~~~v~ 110 (347)
T KOG0647|consen 35 FSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPV-LDVCWSDDG-SKVFSGGCDKQAKLWDLASG--QVSQVA 110 (347)
T ss_pred eccccCceEEecccCCceEEEEEecCCcccchhhhccCCCe-EEEEEccCC-ceEEeeccCCceEEEEccCC--Ceeeee
Confidence 888 555777999999999999976 34333 223455666 666999999 55999999999999999775 345788
Q ss_pred cCCCCeEEEEEcCCC--CEEEEEEecCCcC
Q 008196 79 QHSAPTAGISFSSDD--KAVSSLCWQRAKP 106 (574)
Q Consensus 79 gH~~~VtSVaFSPDG--~~LaS~sWD~sg~ 106 (574)
.|.++|.++.|-+.. ..|+|++||+.-+
T Consensus 111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLK 140 (347)
T ss_pred ecccceeEEEEecCCCcceeEeccccccee
Confidence 999999999997554 4899999998654
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.01 E-value=2.5e-09 Score=109.73 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=96.6
Q ss_pred CccCCCCEEEEEeCCCcEEEEECC-CCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 1 MYNCKDEHLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~-Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
+|+|+|.+||+|+.|..|.+|+.. ..+....+++|.+.| ..|.|.+|+.+ |++|+.|++|+.||+.+. ...+..++
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAV-M~l~~~~d~s~-i~S~gtDk~v~~wD~~tG-~~~rk~k~ 130 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAV-MELHGMRDGSH-ILSCGTDKTVRGWDAETG-KRIRKHKG 130 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccccccceeeecccccee-EeeeeccCCCE-EEEecCCceEEEEecccc-eeeehhcc
Confidence 599999999999999999999963 345578889999988 77799999955 999999999999999773 45567899
Q ss_pred CCCCeEEEEEcCCCCEEEE--------EEecCCcCEEEeccCCCccee----------EecccCCCeEeccCCCCCC
Q 008196 80 HSAPTAGISFSSDDKAVSS--------LCWQRAKPVFIDETTCKAETA----------LLGGAVGDSILMPDPLPSV 138 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS--------~sWD~sg~viv~e~~~s~e~a----------Llg~~~~dsVi~PDPlps~ 138 (574)
|...|++++=+.-|..++. ..||.+.+..+.....+.+.. ...++.++.+-+|||....
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d 207 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND 207 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCc
Confidence 9999999985555555554 334443332222221222222 2234455566789997654
No 47
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.99 E-value=1.2e-09 Score=125.96 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=90.5
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCC------------------CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEE
Q 008196 2 YNCKDEHLASISLSGDLILHNLAS------------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~T------------------g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVr 63 (574)
|++||+|||+|++|+.|.||.... ++++..+.+|.+.| ..|+|+|++ .+|++++.|++|.
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV-~Dv~Wsp~~-~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDV-LDVNWSPDD-SLLVSVSLDNSVI 154 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcc-ceeccCCCc-cEEEEecccceEE
Confidence 999999999999999999999872 23567888999999 666999997 7899999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCE
Q 008196 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPV 107 (574)
Q Consensus 64 LWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~v 107 (574)
|||..+. .++..+.+|...|-.+.|.|-|++|++-+.|+..++
T Consensus 155 iwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikv 197 (942)
T KOG0973|consen 155 IWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKV 197 (942)
T ss_pred EEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEE
Confidence 9999886 677789999999999999999999999876665443
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.8e-10 Score=119.01 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=90.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~-gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|+.|.++||+|+.||.|+||.+.+|.|++.|. .|...+ .|+.|+.|+.+ +++++.|.+|+|.-+... ..+..+.+|
T Consensus 271 FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGv-t~l~FSrD~Sq-iLS~sfD~tvRiHGlKSG-K~LKEfrGH 347 (508)
T KOG0275|consen 271 FSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGV-TCLSFSRDNSQ-ILSASFDQTVRIHGLKSG-KCLKEFRGH 347 (508)
T ss_pred ecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCe-eEEEEccCcch-hhcccccceEEEeccccc-hhHHHhcCc
Confidence 88899999999999999999999999999998 555566 99999999866 899999999999999764 445679999
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCCcCE
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRAKPV 107 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~sg~v 107 (574)
...|+.+.|.+||.+|++++-|...++
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEE
Confidence 999999999999999999986654443
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.99 E-value=7e-09 Score=97.97 Aligned_cols=105 Identities=25% Similarity=0.342 Sum_probs=86.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|++++++|++++.||.|++||+.++.....+..|...+ ..+.|++++ .++++++.|+.|++||+... .....+..|.
T Consensus 17 ~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~-~~~~~~~~~~ 93 (289)
T cd00200 17 FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV-RDVAASADG-TYLASGSSDKTIRLWDLETG-ECVRTLTGHT 93 (289)
T ss_pred EcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcce-eEEEECCCC-CEEEEEcCCCeEEEEEcCcc-cceEEEeccC
Confidence 78999999999999999999999888888888887766 667999998 56999999999999999763 2344677898
Q ss_pred CCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 82 APTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
..|.+++|++++.+++++.++ +.+.+++
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~--~~i~~~~ 121 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRD--KTIKVWD 121 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCC--CeEEEEE
Confidence 899999999998888877633 4444444
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1e-09 Score=120.90 Aligned_cols=103 Identities=23% Similarity=0.308 Sum_probs=89.5
Q ss_pred ccCCC-CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCC-CeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 2 YNCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSpDG-~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdG-r~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
|+|++ +.+|++|.|++|+||.+.+..+..++++|...| .||+|-+.| +.+|++|++|.+|+|||..+. .+++++.|
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGV-N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeG 225 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGV-NCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEG 225 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCc-ceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhc
Confidence 67755 599999999999999998888999999999888 888987754 457999999999999999874 45778999
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCCcC
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
|...|..++|+|.=.+|++++-|...+
T Consensus 226 Ht~Nvs~v~fhp~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 226 HTNNVSFVFFHPELPIIISGSEDGTVR 252 (794)
T ss_pred ccccceEEEecCCCcEEEEecCCccEE
Confidence 999999999999999999988665433
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=4.5e-09 Score=115.87 Aligned_cols=106 Identities=17% Similarity=0.274 Sum_probs=93.1
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|-.-.+++++|+.|..|+|++..+++.+.+|..|.+.+ +||+.+|.. .+++++++|-+||+||......+.+++.||.
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyI-R~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYI-RSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccce-eeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 33445799999999999999999999999999988777 999999997 5699999999999999988788888999999
Q ss_pred CCeEEEEEcC-CCCEEEEEEecCCcCEEE
Q 008196 82 APTAGISFSS-DDKAVSSLCWQRAKPVFI 109 (574)
Q Consensus 82 ~~VtSVaFSP-DG~~LaS~sWD~sg~viv 109 (574)
..|.+|+|+| |...+++++-|++.+++-
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEE
Confidence 9999999997 567899988887666543
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.5e-09 Score=122.95 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=90.4
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|+|.+-++++|++|..|+||+..+.+|+.++.+|-+.| +.+.|++.- .+|+++++|.+|+||+..++ .++..+.||
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYV-Rt~~FHhey-PWIlSASDDQTIrIWNwqsr-~~iavltGH 134 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV-RTVFFHHEY-PWILSASDDQTIRIWNWQSR-KCIAVLTGH 134 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccceehhhhcccccee-EEeeccCCC-ceEEEccCCCeEEEEeccCC-ceEEEEecC
Confidence 389999999999999999999999999999999999888 777999997 45999999999999999774 456689999
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCC
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
+..|.|..|+|....|++++-|.+
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred ceEEEeeccCCccceEEEecccce
Confidence 999999999999999999875543
No 53
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.95 E-value=6.7e-09 Score=116.39 Aligned_cols=100 Identities=17% Similarity=0.349 Sum_probs=87.4
Q ss_pred ccCCCCEEEEEeC-CCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~~LASGS~-DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
||..|.+||.||. =|++.||+..+...+-..++|...+ .+++|+||| ++|++|+.||.|||||.... .+..++..|
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i-~~l~YSpDg-q~iaTG~eDgKVKvWn~~Sg-fC~vTFteH 391 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRI-TSLAYSPDG-QLIATGAEDGKVKVWNTQSG-FCFVTFTEH 391 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeeccceeeeccccccce-eeEEECCCC-cEEEeccCCCcEEEEeccCc-eEEEEeccC
Confidence 7888999999885 5899999998877777778888888 888999999 78999999999999999773 455689999
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCC
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
...|+.++|+..|+.+++.+-|..
T Consensus 392 ts~Vt~v~f~~~g~~llssSLDGt 415 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNVLLSSSLDGT 415 (893)
T ss_pred CCceEEEEEEecCCEEEEeecCCe
Confidence 999999999999999999775543
No 54
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=2.3e-09 Score=120.22 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=87.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeE
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~Vt 85 (574)
-++|++|++||.|++||++..+...++.+....+ +.|+|+|.....++++.+.|.|.+||++........+.+|.++|.
T Consensus 146 p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESi-RDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 146 PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESI-RDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred ccEEEecCCCceEEEEeeecccccccccccchhh-hceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence 4689999999999999999988888888755556 888999976678999999999999999765555667899999999
Q ss_pred EEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 86 GISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 86 SVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
|+.|+|++.+|+|++ +++.+.+|+
T Consensus 225 c~nwhPnr~~lATGG--RDK~vkiWd 248 (839)
T KOG0269|consen 225 CLNWHPNREWLATGG--RDKMVKIWD 248 (839)
T ss_pred EEeecCCCceeeecC--CCccEEEEe
Confidence 999999999999987 555555554
No 55
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.95 E-value=3.4e-09 Score=122.23 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=99.2
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|+|++.+|++++.|+.|+|||..+.+++..+++|++.| ..|.|.|-| +|+++-++|++|+||++... -....+.++
T Consensus 136 ~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~V-KGvs~DP~G-ky~ASqsdDrtikvwrt~dw-~i~k~It~p 212 (942)
T KOG0973|consen 136 NWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLV-KGVSWDPIG-KYFASQSDDRTLKVWRTSDW-GIEKSITKP 212 (942)
T ss_pred ccCCCccEEEEecccceEEEEccccceeeeeeecccccc-cceEECCcc-CeeeeecCCceEEEEEcccc-eeeEeeccc
Confidence 489999999999999999999999999999999999888 788999999 66999999999999997542 222223332
Q ss_pred C------CCeEEEEEcCCCCEEEEEE-ecCCc--CEEEeccCCCcceeEecccCCCeEec
Q 008196 81 S------APTAGISFSSDDKAVSSLC-WQRAK--PVFIDETTCKAETALLGGAVGDSILM 131 (574)
Q Consensus 81 ~------~~VtSVaFSPDG~~LaS~s-WD~sg--~viv~e~~~s~e~aLlg~~~~dsVi~ 131 (574)
. ..+..+.|||||++|++.- .+..+ ..++...+++.+..++|+...-.++.
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvr 272 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVR 272 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEE
Confidence 2 2388999999999999932 22222 24556667888888988876544433
No 56
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.94 E-value=2.7e-09 Score=115.56 Aligned_cols=98 Identities=20% Similarity=0.278 Sum_probs=73.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCce---eEEecCCCC-CeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEe
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAK---AAELKDPNE-QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~---l~t~~gh~~-~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl 77 (574)
|++||++||.|+.||.|.+|+...... ...-+.|.. .-+.||.|++|| ++|++-|.|+++++||++.....+...
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccchhhh
Confidence 899999999999999999999844322 233345554 244999999999 559999999999999996543333232
Q ss_pred cc--CCCCeEEEEEcCCCCEEEEEE
Q 008196 78 KQ--HSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 78 ~g--H~~~VtSVaFSPDG~~LaS~s 100 (574)
.+ ...+-+.+||||+.++|+++.
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecc
Confidence 22 233467889999999999944
No 57
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.93 E-value=4.9e-09 Score=107.36 Aligned_cols=100 Identities=27% Similarity=0.403 Sum_probs=86.0
Q ss_pred ccC--CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 2 YNC--KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSp--DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
|+| ||+.+++. .|+++..||+++.++...+...|+..++.|.|+|+..++|++|++||.|+|||++.....+..+.+
T Consensus 178 WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~ 256 (370)
T KOG1007|consen 178 WSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG 256 (370)
T ss_pred cCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC
Confidence 555 78888887 689999999999999999998888888999999998899999999999999999765667788999
Q ss_pred CCCCeEEEEEcCCCC-EEEEEEec
Q 008196 80 HSAPTAGISFSSDDK-AVSSLCWQ 102 (574)
Q Consensus 80 H~~~VtSVaFSPDG~-~LaS~sWD 102 (574)
|..+|++|.|+|... .|++++-|
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred CceEEEEEEecCccceEEEecCCC
Confidence 999999999998654 55555533
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=2.5e-09 Score=115.12 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=94.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|-.||++||+|...|.|+|+|..+...++.+.+|...+ ..+.|+|++..++++|++|+.+++||+.+... ...+.+|.
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv-~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~ht 153 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPV-HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHT 153 (487)
T ss_pred eecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCce-eEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCc
Confidence 66799999999999999999987766788999998887 77799999989999999999999999988653 45789999
Q ss_pred CCeEEEEEcCC-CCEEEEEEecCCcCEEEeccCCCcceeEec
Q 008196 82 APTAGISFSSD-DKAVSSLCWQRAKPVFIDETTCKAETALLG 122 (574)
Q Consensus 82 ~~VtSVaFSPD-G~~LaS~sWD~sg~viv~e~~~s~e~aLlg 122 (574)
+.|+|.+|+|. +.+++|+++|...+. |+.+.....+..+.
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl-~DtR~~~~~v~eln 194 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRL-WDTRSLTSRVVELN 194 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEE-EEeccCCceeEEec
Confidence 99999999986 457888998854333 33323334444443
No 59
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=8.9e-09 Score=102.60 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=89.5
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecC--CC----CCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKD--PN----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~g--h~----~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll 74 (574)
+|+.+|-++++|+.|.+|+.||++-..+++++.. |. ...+..|+..|.| +||++|..|..+.+||+++. ..+
T Consensus 189 lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~-r~i 266 (350)
T KOG0641|consen 189 LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGG-RMI 266 (350)
T ss_pred EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCC-cee
Confidence 4778899999999999999999998888888763 21 2344777999998 78999999999999999884 456
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEEecCCcCE
Q 008196 75 SWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPV 107 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~v 107 (574)
+.+..|...|+||.|+|...+++++++|...++
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEE
Confidence 788999999999999999999999999865543
No 60
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=7.5e-09 Score=107.00 Aligned_cols=96 Identities=19% Similarity=0.263 Sum_probs=79.1
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.||+.|.+||.|+.||.|.|||+.+...-+.+.+|...+ .+|+|++|| ++|++++.|..|++||+....+.. -.-.
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi-~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~--rirf 105 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPI-TSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLK--RIRF 105 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEccccchhhhhhccccce-eEEEecCCC-CEeeeecCCceeEEEeccCCCcee--EEEc
Confidence 389999999999999999999999988778888888777 888999999 559999999999999996544432 2235
Q ss_pred CCCeEEEEEcCCCCEEEEEE
Q 008196 81 SAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~s 100 (574)
..+|+.+.|+|-....+.++
T Consensus 106 ~spv~~~q~hp~k~n~~va~ 125 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVAT 125 (405)
T ss_pred cCccceeeeccccCCeEEEE
Confidence 67899999998765555443
No 61
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.92 E-value=5.5e-09 Score=110.40 Aligned_cols=105 Identities=20% Similarity=0.353 Sum_probs=86.0
Q ss_pred ccC-CCCEEEEEeCCCcEEEEECCCCc-------eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce
Q 008196 2 YNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (574)
Q Consensus 2 FSp-DG~~LASGS~DGtVrIWDl~Tg~-------~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l 73 (574)
|+| |++.||+|+.|.+|.||.+..+. .+..+.+|...| -.|+|+|....+|++++.|.+|.|||+.+....
T Consensus 89 w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrV-g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal 167 (472)
T KOG0303|consen 89 WCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRV-GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL 167 (472)
T ss_pred cCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeE-EEEeecccchhhHhhccCCceEEEEeccCCcee
Confidence 444 56789999999999999996543 366788888777 777999998889999999999999999775544
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 74 VSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 74 l~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
+ .+. |.+.|++++|+.||..|++.|-| +++.+++
T Consensus 168 i-~l~-hpd~i~S~sfn~dGs~l~TtckD--KkvRv~d 201 (472)
T KOG0303|consen 168 I-TLD-HPDMVYSMSFNRDGSLLCTTCKD--KKVRVID 201 (472)
T ss_pred e-ecC-CCCeEEEEEeccCCceeeeeccc--ceeEEEc
Confidence 4 444 99999999999999999999844 4554444
No 62
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.92 E-value=1.4e-06 Score=94.67 Aligned_cols=93 Identities=16% Similarity=0.283 Sum_probs=75.1
Q ss_pred ccCCC-CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG-~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|+|.. .+|++.+.|+.|++||+...+....+... ... ..|+|+++| .+|+.|...|.|..||++.....+..+.+|
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~Pl-stvaf~~~G-~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-HPL-STVAFSECG-TYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred ecCCccceEEEecccceEEEeecccccccceeeec-CCc-ceeeecCCc-eEEEeecCCceEEEEecccCCCCceEeeec
Confidence 56654 48899999999999999876666666532 244 667999999 779999999999999998766677789999
Q ss_pred CCCeEEEEEcCCCCEEEE
Q 008196 81 SAPTAGISFSSDDKAVSS 98 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS 98 (574)
...|+||+|.+.. .+++
T Consensus 293 ~~sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 293 DASVTRVAFQPSP-TVLT 309 (673)
T ss_pred ccceeEEEeeecc-eeee
Confidence 9999999998764 4444
No 63
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.91 E-value=8.2e-09 Score=106.05 Aligned_cols=120 Identities=19% Similarity=0.221 Sum_probs=90.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|..|++.|++++.|.+|+.||.++|++++.+++|.+-+ ..|.-+.-|..++.+++.|++++|||++.+... . .....
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~v-Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~-~-t~~~k 174 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFV-NSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI-K-TFENK 174 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccceeeehhcccccee-eecCccccCCeEEEecCCCceEEEEeecccchh-h-ccccc
Confidence 78899999999999999999999999999999988766 665766667789999999999999999764332 2 23345
Q ss_pred CCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCcceeEecccCC
Q 008196 82 APTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALLGGAVG 126 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~ 126 (574)
..+++++|..++..+.+++-| +.+.+|+.....-...+.++.+
T Consensus 175 yqltAv~f~d~s~qv~sggId--n~ikvWd~r~~d~~~~lsGh~D 217 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGID--NDIKVWDLRKNDGLYTLSGHAD 217 (338)
T ss_pred eeEEEEEecccccceeecccc--CceeeeccccCcceEEeecccC
Confidence 679999999999999998744 4444555322233333344443
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.91 E-value=2.8e-09 Score=115.50 Aligned_cols=112 Identities=20% Similarity=0.324 Sum_probs=80.6
Q ss_pred ccCCCC-EEEEEeCCCcEEEEECCCCce-eEEec----CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC--Cce
Q 008196 2 YNCKDE-HLASISLSGDLILHNLASGAK-AAELK----DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPK 73 (574)
Q Consensus 2 FSpDG~-~LASGS~DGtVrIWDl~Tg~~-l~t~~----gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~--~~l 73 (574)
|+|+.+ .+++++.||+++|||+..-+. +..|+ +...-.+..|+|++|| .+||.||.||.|.+||..+. .+.
T Consensus 276 whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~ 354 (641)
T KOG0772|consen 276 WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPV 354 (641)
T ss_pred cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccc
Confidence 677654 789999999999999976433 33333 1112223555999999 55999999999999998442 233
Q ss_pred eEEeccCCC--CeEEEEEcCCCCEEEEEEecCCcCEEEeccCCC
Q 008196 74 VSWLKQHSA--PTAGISFSSDDKAVSSLCWQRAKPVFIDETTCK 115 (574)
Q Consensus 74 l~tl~gH~~--~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s 115 (574)
...-.+|.. .|+||.||+||++|++.++|..-++ |+-++++
T Consensus 355 ~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv-WDLrq~k 397 (641)
T KOG0772|consen 355 MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV-WDLRQFK 397 (641)
T ss_pred eEeeeccCCCCceeEEEeccccchhhhccCCCceee-eeccccc
Confidence 455678887 7999999999999999887754333 3433333
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3.1e-09 Score=120.51 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=95.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+|..-+|.++-..|.|++||.+-+.++..|..|.+.| +.|+|+|.+ .++++||+|..|++|++..+ .++.++.||-
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpV-Rgv~FH~~q-plFVSGGDDykIkVWnYk~r-rclftL~GHl 93 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPV-RGVDFHPTQ-PLFVSGGDDYKIKVWNYKTR-RCLFTLLGHL 93 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCcc-ceeeecCCC-CeEEecCCccEEEEEecccc-eehhhhcccc
Confidence 88999999999999999999999999999999999988 999999998 77999999999999999774 4566899999
Q ss_pred CCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 82 APTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
+.|+.+.|++.--+|++++.|.+..++.|.
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 999999999999999998866655555443
No 66
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.90 E-value=1.3e-08 Score=110.58 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=91.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCce--eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~--l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
++|++.++|.|+.|+.|+||.+..+.. ...+..|.+.+ ++|+|+||+ .+|++|...+.|.+||+..++.......=
T Consensus 451 v~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~i-T~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~~~~w~F 528 (603)
T KOG0318|consen 451 VSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAI-TDVAYSPDG-AYLAAGDASRKVVLYDVASREVKTNRWAF 528 (603)
T ss_pred EcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCc-eEEEECCCC-cEEEEeccCCcEEEEEcccCceecceeee
Confidence 589999999999999999999966543 33555678777 888999999 66999999999999999776655444555
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCccee
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETA 119 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~a 119 (574)
|...|.||+|+|+..++++++-| ..+++++........
T Consensus 529 HtakI~~~aWsP~n~~vATGSlD--t~Viiysv~kP~~~i 566 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVATGSLD--TNVIIYSVKKPAKHI 566 (603)
T ss_pred eeeeEEEEEeCCCceEEEecccc--ceEEEEEccChhhhe
Confidence 99999999999999999999855 556666544444443
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.89 E-value=2.4e-08 Score=111.68 Aligned_cols=222 Identities=18% Similarity=0.214 Sum_probs=134.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
.+.+|++|+.|.+++|||..+|+|...+.+|...+ .|+...+ .++++|+.|.+|++||+.+. ..+..+.+|.++|
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv-~~~~~~~---~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V 334 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSV-RCLTIDP---FLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPV 334 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceE-EEEEccC---ceEeeccCCceEEEEeccCc-ceEEEeccccccE
Confidence 47799999999999999999999999999998777 7766544 45889999999999999863 4566778899999
Q ss_pred EEEEEcCCCCEEEEEEecCCcCEEEeccCCCccee-EecccCCC-eEeccCCCCCCcccccccccccCCCCCCCCCCCCC
Q 008196 85 AGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETA-LLGGAVGD-SILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSA 162 (574)
Q Consensus 85 tSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~a-Llg~~~~d-sVi~PDPlps~t~ss~sssts~~~~~SS~~~~s~g 162 (574)
++|.++ +.++++++.|. .+.+|+.. ..... .+.++... .-++.+...-- .+.+ . .
T Consensus 335 ~~v~~~--~~~lvsgs~d~--~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~~~~----~Sgs---------~-----D 391 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDG--TVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSENRL----LSGS---------L-----D 391 (537)
T ss_pred EEEEec--CCEEEEEecCc--eEEEEEhh-hceeeeeecCCcceEEEEEecCcceE----Eeee---------e-----c
Confidence 999996 78999999776 33334322 22221 12222221 11223331000 0000 0 0
Q ss_pred cccccccCCCCcCCCCcccCCCCCCc-cccccCCCCCCCCCccccccccccCCCCCCcc---cccCCCCCCCcCCCCCCc
Q 008196 163 EASSLTVGGTGEETPQRSYLRPGGPL-ARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL---DKLWDGHEGAKKDHLPID 238 (574)
Q Consensus 163 ~~sS~~~~st~e~tPsr~~~~~~G~l-s~~~~p~~~~~~~~~~~vfSPl~d~~~~~~s~---~~~w~~~~g~~~d~~~~~ 238 (574)
.. -++|+=.+. .-+++..+......++.++.- .-+.-++ .|+||.+++.-...+...
T Consensus 392 ~~---------------IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~----~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 392 TT---------------IKVWDLRTKRKCIHTLQGHTSLVSSLLLRDN----FLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred cc---------------eEeecCCchhhhhhhhcCCcccccccccccc----eeEeccccccEEEeecccCceeeeeccC
Confidence 00 123332222 222333332222233333322 2233333 459999998776666553
Q ss_pred CCCCccc-cCCCCCCCCccCCCCCccccccccCCCCcc
Q 008196 239 KKPSSML-FPSSSRRFPYAEDGSNEHSVFDWKSSSTSK 275 (574)
Q Consensus 239 ~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 275 (574)
..+.+ |+......-+....++...|||..++...+
T Consensus 453 --~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 453 --HVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred --CcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 22244 545544555556666777889988877666
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.89 E-value=5.1e-09 Score=110.16 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=85.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCc---eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEec
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~---~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~ 78 (574)
+++.-++||+||.|..|+|||.+++. ...+|.+|++.| ..|.|+|...+.|++|+.|+++++||++.....++.+.
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV-ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV-SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh-hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 45677899999999999999998763 356888999877 77799999989999999999999999987665677899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEecC
Q 008196 79 QHSAPTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
+|.+.|.++.|+ ++..|++++-|.
T Consensus 387 ~h~DKvl~vdW~-~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 387 GHNDKVLSVDWN-EGGLIVSGGADN 410 (423)
T ss_pred cCCceEEEEecc-CCceEEeccCcc
Confidence 999999999997 467888887553
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.88 E-value=1.8e-08 Score=116.88 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=81.9
Q ss_pred ccC-CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEcc-CCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSp-DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSP-dGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
|++ ++.+|++|+.|+.|+|||+.++.++..+..+ ..+ .++.|++ +| .+|++|+.|+.|++||+......+..+.+
T Consensus 583 ~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v-~~v~~~~~~g-~~latgs~dg~I~iwD~~~~~~~~~~~~~ 659 (793)
T PLN00181 583 YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI-CCVQFPSESG-RSLAFGSADHKVYYYDLRNPKLPLCTMIG 659 (793)
T ss_pred EcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe-EEEEEeCCCC-CEEEEEeCCCeEEEEECCCCCccceEecC
Confidence 665 7899999999999999999999998888754 455 6778965 55 67999999999999999764434556789
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCC
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
|...|.++.|. ++.+|++++.|..
T Consensus 660 h~~~V~~v~f~-~~~~lvs~s~D~~ 683 (793)
T PLN00181 660 HSKTVSYVRFV-DSSTLVSSSTDNT 683 (793)
T ss_pred CCCCEEEEEEe-CCCEEEEEECCCE
Confidence 99999999997 7889999886653
No 70
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.88 E-value=1.1e-08 Score=107.10 Aligned_cols=99 Identities=22% Similarity=0.271 Sum_probs=87.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|++-.-|+++++.|++|+.||+...+.++.+-+|-..| .||+.+|.- .+|++|+.|.+++|||++++ ..+..+.||.
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V-~~L~lhPTl-dvl~t~grDst~RvWDiRtr-~~V~~l~GH~ 277 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGV-YCLDLHPTL-DVLVTGGRDSTIRVWDIRTR-ASVHVLSGHT 277 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHHHhcccccee-EEEeccccc-eeEEecCCcceEEEeeeccc-ceEEEecCCC
Confidence 45555699999999999999999999999999999888 899999986 56999999999999999884 4567899999
Q ss_pred CCeEEEEEcCCCCEEEEEEecC
Q 008196 82 APTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
.+|.+|.+.|-+-.+++++-|.
T Consensus 278 ~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 278 NPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred CcceeEEeecCCCceEEecCCc
Confidence 9999999998888899988654
No 71
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.87 E-value=4.4e-08 Score=113.73 Aligned_cols=105 Identities=21% Similarity=0.399 Sum_probs=82.8
Q ss_pred ccC-CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSp-DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|++ ++.+||+++.||.|+|||+.+++.+..+.+|.+.| .+|+|+|....+|++|+.|++|++||+.... .+..+..|
T Consensus 540 ~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V-~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~ 617 (793)
T PLN00181 540 WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRV-WSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK 617 (793)
T ss_pred eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCE-EEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC
Confidence 444 47899999999999999999999999999998877 7779997433679999999999999997633 34455544
Q ss_pred CCCeEEEEEc-CCCCEEEEEEecCCcCEEEec
Q 008196 81 SAPTAGISFS-SDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 81 ~~~VtSVaFS-PDG~~LaS~sWD~sg~viv~e 111 (574)
..|.++.|+ +++.+|++++.| +.+.+++
T Consensus 618 -~~v~~v~~~~~~g~~latgs~d--g~I~iwD 646 (793)
T PLN00181 618 -ANICCVQFPSESGRSLAFGSAD--HKVYYYD 646 (793)
T ss_pred -CCeEEEEEeCCCCCEEEEEeCC--CeEEEEE
Confidence 579999995 678999998755 3444444
No 72
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.87 E-value=2.9e-09 Score=115.83 Aligned_cols=87 Identities=18% Similarity=0.293 Sum_probs=79.0
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|++||++||+.+.||.++|+|+.+.+.+..++...+.. .||+|+||| +||++|+.|--|.||.+..+ .++..-++|+
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL-LCvcWSPDG-KyIvtGGEDDLVtVwSf~er-RVVARGqGHk 374 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL-LCVCWSPDG-KYIVTGGEDDLVTVWSFEER-RVVARGQGHK 374 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce-EEEEEcCCc-cEEEecCCcceEEEEEeccc-eEEEeccccc
Confidence 89999999999999999999999999998888777777 788999999 56999999999999999763 4566789999
Q ss_pred CCeEEEEEcC
Q 008196 82 APTAGISFSS 91 (574)
Q Consensus 82 ~~VtSVaFSP 91 (574)
.+|..|+|.|
T Consensus 375 SWVs~VaFDp 384 (636)
T KOG2394|consen 375 SWVSVVAFDP 384 (636)
T ss_pred cceeeEeecc
Confidence 9999999977
No 73
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.87 E-value=3.6e-09 Score=116.61 Aligned_cols=103 Identities=25% Similarity=0.397 Sum_probs=84.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-------eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEe
Q 008196 5 KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~-------~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl 77 (574)
|.+.||.++.||.|+||.+..+. ....+..|...| ..|.|+|-.-.+|+++++|-+|+|||+.+.. ....+
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI-~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l 716 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI-TSLRFHPLAADVLAVASYDSTIELWDLANAK-LYSRL 716 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE-EEEEecchhhhHhhhhhccceeeeeehhhhh-hhhee
Confidence 56789999999999999997543 245667777777 7779999776789999999999999997643 33468
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 78 KQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 78 ~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.+|.+.|.+++|||||+.+++.|-| +.+.+++
T Consensus 717 ~gHtdqIf~~AWSpdGr~~AtVcKD--g~~rVy~ 748 (1012)
T KOG1445|consen 717 VGHTDQIFGIAWSPDGRRIATVCKD--GTLRVYE 748 (1012)
T ss_pred ccCcCceeEEEECCCCcceeeeecC--ceEEEeC
Confidence 9999999999999999999999844 5555554
No 74
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=2e-08 Score=100.62 Aligned_cols=133 Identities=16% Similarity=0.269 Sum_probs=96.4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce-eE-------
Q 008196 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VS------- 75 (574)
Q Consensus 4 pDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l-l~------- 75 (574)
.|...||+|+.|..|.+||+.+|+.++.|.+|.++| ..|+|+.+. .++++|+.|.+|++||.+..... ++
T Consensus 69 ~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqV-NtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 69 SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQV-NTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred ccccccccCCCCceEEEEEcccCeeeeeccccccee-eEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 466789999999999999999999999999999999 666999997 77999999999999999543211 00
Q ss_pred ----------------------E---------eccCCCCeEEEEEcCCCCEEEEEEecCCcCEEE---------------
Q 008196 76 ----------------------W---------LKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFI--------------- 109 (574)
Q Consensus 76 ----------------------t---------l~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv--------------- 109 (574)
+ ......+|+|++|++|+...+.++-|..-.++-
T Consensus 147 ~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred ceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence 0 011245799999999999988876553322111
Q ss_pred -----eccCCCcceeEecccCCCeEeccCCCCCC
Q 008196 110 -----DETTCKAETALLGGAVGDSILMPDPLPSV 138 (574)
Q Consensus 110 -----~e~~~s~e~aLlg~~~~dsVi~PDPlps~ 138 (574)
+.+-...+.....+..++-++.||-....
T Consensus 227 ~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 227 MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 11111234445566667788888876443
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.86 E-value=3.9e-09 Score=113.52 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=77.3
Q ss_pred ccC-CCCEEEEEeCCCcEEEEECCC-CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 2 YNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSp-DG~~LASGS~DGtVrIWDl~T-g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
|.| .+++|++|+.|+.|+||++.. +.++++|.+|...| +.++|+.+|.. ++|++.|++|++||+.+.... ..+..
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~V-rd~~~s~~g~~-fLS~sfD~~lKlwDtETG~~~-~~f~~ 298 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPV-RDASFNNCGTS-FLSASFDRFLKLWDTETGQVL-SRFHL 298 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhh-hhhhccccCCe-eeeeecceeeeeeccccceEE-EEEec
Confidence 445 788999999999999999987 88999999998888 88899999966 899999999999999775333 23322
Q ss_pred CCCCeEEEEEcCCC-CEEEEEE
Q 008196 80 HSAPTAGISFSSDD-KAVSSLC 100 (574)
Q Consensus 80 H~~~VtSVaFSPDG-~~LaS~s 100 (574)
...++|+.|+||+ +.++++.
T Consensus 299 -~~~~~cvkf~pd~~n~fl~G~ 319 (503)
T KOG0282|consen 299 -DKVPTCVKFHPDNQNIFLVGG 319 (503)
T ss_pred -CCCceeeecCCCCCcEEEEec
Confidence 3358999999999 5555544
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.85 E-value=3.5e-08 Score=105.39 Aligned_cols=99 Identities=20% Similarity=0.337 Sum_probs=85.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCC-CeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNE-QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~-~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
++.|+||++++.|++....|+.+|.++........ --+.+.+|+||| .++++|..|+.|+|||+.... .+..+.+|.
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~-~~a~Fpght 389 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQT-NVAKFPGHT 389 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCcc-ccccCCCCC
Confidence 57899999999999999999999999877775433 335788999999 889999999999999997743 456789999
Q ss_pred CCeEEEEEcCCCCEEEEEEecC
Q 008196 82 APTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
++|..|.|+.+|.+|++++-|.
T Consensus 390 ~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred CceeEEEeccCceEEEEEecCC
Confidence 9999999999999999977443
No 77
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=2.5e-09 Score=119.31 Aligned_cols=96 Identities=19% Similarity=0.287 Sum_probs=84.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+.+..+|+.|+.+|+|++||+..++.++++.+|...++. |.|+|.+ .|.++|+.|+.+++||++... +...+.+|.
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~s-v~f~P~~-~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~ 154 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITS-VDFHPYG-EFFASGSTDTDLKIWDIRKKG-CSHTYKSHT 154 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcce-eeeccce-EEeccccccccceehhhhccC-ceeeecCCc
Confidence 6777889999999999999999999999999999988844 4999998 668999999999999996433 345678899
Q ss_pred CCeEEEEEcCCCCEEEEEE
Q 008196 82 APTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~s 100 (574)
..|.++.|+|+|++++++.
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ 173 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGG 173 (825)
T ss_pred ceeEEEeecCCCceeeccC
Confidence 9999999999999999954
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.82 E-value=8.2e-09 Score=115.68 Aligned_cols=100 Identities=17% Similarity=0.273 Sum_probs=90.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
.++|+++|+||+.|..|+||-++-|.|-..|.+|.+.| .+|.|-|.. +++++||.|+.|+.||-... ..++.+.+|.
T Consensus 558 IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv-m~V~F~P~~-~~FFt~gKD~kvKqWDg~kF-e~iq~L~~H~ 634 (888)
T KOG0306|consen 558 ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV-MSVQFLPKT-HLFFTCGKDGKVKQWDGEKF-EEIQKLDGHH 634 (888)
T ss_pred ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce-eEEEEcccc-eeEEEecCcceEEeechhhh-hhheeeccch
Confidence 37899999999999999999999999999999999888 777999985 89999999999999998763 4567899999
Q ss_pred CCeEEEEEcCCCCEEEEEEecCC
Q 008196 82 APTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
..|+|++-+|+|.++++++.|..
T Consensus 635 ~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 635 SEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred heeeeeEEcCCCCeEEeccCCce
Confidence 99999999999999999875543
No 79
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.80 E-value=6.7e-09 Score=112.27 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=91.2
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCcee--EEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l--~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
..+||+.|++|+.-.+|-|||+..-..- ..+. .....++.|+.+||. +++++|+.||.|.|||+.. +.++..+++
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDa-kvcFsccsdGnI~vwDLhn-q~~VrqfqG 549 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHN-QTLVRQFQG 549 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCcc-ceeeeeccCCcEEEEEccc-ceeeecccC
Confidence 4689999999999999999999654331 2222 223444778999997 7799999999999999988 467889999
Q ss_pred CCCCeEEEEEcCCCCEEEE-------EEecCCcCEEEeccCCCcceeEeccc
Q 008196 80 HSAPTAGISFSSDDKAVSS-------LCWQRAKPVFIDETTCKAETALLGGA 124 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS-------~sWD~sg~viv~e~~~s~e~aLlg~~ 124 (574)
|.+.+.||.+++||..|-+ .|||......+..+.+...+..++..
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~c 601 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYC 601 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccC
Confidence 9999999999999999988 67876544334444455444444443
No 80
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.80 E-value=2.5e-08 Score=102.98 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=79.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEec---CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEec
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~---gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~ 78 (574)
|+|.|++|+.|....++++||+.+-+|..... +|.+.| .+|.|++.| .+.++|+.||.|+|||-....+....-.
T Consensus 224 fHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai-~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~ 301 (430)
T KOG0640|consen 224 FHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI-TQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGN 301 (430)
T ss_pred ecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce-eEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHh
Confidence 89999999999999999999999988865443 566667 788999998 7899999999999999855333322335
Q ss_pred cCCC-CeEEEEEcCCCCEEEEEE
Q 008196 79 QHSA-PTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 79 gH~~-~VtSVaFSPDG~~LaS~s 100 (574)
+|.+ .|.+..|..+|++|++.+
T Consensus 302 AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 302 AHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred hcCCceeeeEEEccCCeEEeecC
Confidence 6764 499999999999999954
No 81
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.79 E-value=3.5e-08 Score=103.96 Aligned_cols=124 Identities=21% Similarity=0.307 Sum_probs=93.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC--CCceeEEecc
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--RSPKVSWLKQ 79 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~--~~~ll~tl~g 79 (574)
|+. ...+++++.|.+|++||+.++.++-.+.+. ..+.|+.++|.. .||++||.|..++|||.+. .....+++.+
T Consensus 268 w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g 343 (423)
T KOG0313|consen 268 WSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIG 343 (423)
T ss_pred EcC-CCceEeecccceEEEEEeecccceeeeecC--cceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeec
Confidence 444 668999999999999999999998888743 444888999986 8899999999999999953 3355678999
Q ss_pred CCCCeEEEEEcCCCC-EEEEEEecCCcCEEEeccCCCcceeEecccCCCeEec
Q 008196 80 HSAPTAGISFSSDDK-AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM 131 (574)
Q Consensus 80 H~~~VtSVaFSPDG~-~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~dsVi~ 131 (574)
|...|.++.|+|... .|++++.|...+ +|+-+.+......+.++ ++-++.
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~k-lWDvRS~k~plydI~~h-~DKvl~ 394 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVK-LWDVRSTKAPLYDIAGH-NDKVLS 394 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEE-EEEeccCCCcceeeccC-CceEEE
Confidence 999999999999776 455677775433 34555555555555444 344443
No 82
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=1.4e-08 Score=107.85 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=82.8
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
+|+||++||++|+.|..+++||+.+|.+...+...++.-+.+++|.|||.+ +++|+.|++|..||+.+.. .-.+....
T Consensus 276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~-~~~W~gvr 353 (519)
T KOG0293|consen 276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI-LGNWEGVR 353 (519)
T ss_pred EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch-hhcccccc
Confidence 699999999999999999999999999988887544444466699999966 9999999999999998853 22232233
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCC
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
...|.+++.++||+++++.+-|..
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccc
Confidence 356999999999999999875543
No 83
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=5.6e-08 Score=98.31 Aligned_cols=93 Identities=17% Similarity=0.281 Sum_probs=77.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeE
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~Vt 85 (574)
++.+++++.|++||||+...++.+.+|.+|..-|+. .+|+|....++++++.|++++|||++...... .+..|...|.
T Consensus 117 r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~-a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil 194 (311)
T KOG0277|consen 117 RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQ-AAFSPHIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEIL 194 (311)
T ss_pred ceeEEeeccCCceEeecCCCCcceEeecCCccEEEE-EecCCCCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeE
Confidence 457888899999999999999999999998877744 49999888899999999999999996543333 4889999999
Q ss_pred EEEEcCCC-CEEEEEE
Q 008196 86 GISFSSDD-KAVSSLC 100 (574)
Q Consensus 86 SVaFSPDG-~~LaS~s 100 (574)
|+.|+.-. .+|+|++
T Consensus 195 ~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGG 210 (311)
T ss_pred eecccccCCcEEEecC
Confidence 99998644 5556644
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=4e-08 Score=108.89 Aligned_cols=104 Identities=23% Similarity=0.262 Sum_probs=90.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~ 82 (574)
++.|..|++|+..+.|++||-.+++.+-.+++|+..| ++|..+.||.+ +++++.||+|++||+..+ .++.++..|..
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNV-r~ll~~dDGt~-~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e 256 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNV-RVLLVNDDGTR-LLSASSDGTIRLWDLGQQ-RCLATYIVHKE 256 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeeccccce-EEEEEcCCCCe-EeecCCCceEEeeecccc-ceeeeEEeccC
Confidence 5567799999999999999999999999999999888 99999999977 999999999999999764 45667999999
Q ss_pred CeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 83 PTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 83 ~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.||++.-+++=.+++++. +++.++..+
T Consensus 257 ~VWaL~~~~sf~~vYsG~--rd~~i~~Td 283 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGG--RDGNIYRTD 283 (735)
T ss_pred ceEEEeeCCCcceEEecC--CCCcEEecc
Confidence 999999998888888775 556665544
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.4e-08 Score=102.58 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=84.7
Q ss_pred ccC-CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSp-DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|+| ..+++++++.|+.++|||++..-....+..|...+ .|+.|+.-.+++|+||+.|+.|++||++.....+..+.+|
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Ei-l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh 233 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEI-LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH 233 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCceeEEEecccee-EeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence 566 36799999999999999997644434478788677 5559999888999999999999999997655667788999
Q ss_pred CCCeEEEEEcCCC-CEEEEEEecCCcCE
Q 008196 81 SAPTAGISFSSDD-KAVSSLCWQRAKPV 107 (574)
Q Consensus 81 ~~~VtSVaFSPDG-~~LaS~sWD~sg~v 107 (574)
...|+.|.|||-. ..|+++++|-..++
T Consensus 234 ~~AVRkvk~Sph~~~lLaSasYDmT~ri 261 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHASLLASASYDMTVRI 261 (311)
T ss_pred ceEEEEEecCcchhhHhhhccccceEEe
Confidence 9999999999865 46667777754443
No 86
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.77 E-value=8.7e-08 Score=100.63 Aligned_cols=98 Identities=18% Similarity=0.388 Sum_probs=86.4
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|+.||.|||||+.+|.|+||...++...+.+.+.-..+ .=|.|+|-+ ++|+.|+.||.|-+|.+... ...+.+.+|
T Consensus 113 ~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~di-eWl~WHp~a-~illAG~~DGsvWmw~ip~~-~~~kv~~Gh 189 (399)
T KOG0296|consen 113 SFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDI-EWLKWHPRA-HILLAGSTDGSVWMWQIPSQ-ALCKVMSGH 189 (399)
T ss_pred EEccCceEEEecCCCccEEEEEcccCceEEEeecccCce-EEEEecccc-cEEEeecCCCcEEEEECCCc-ceeeEecCC
Confidence 499999999999999999999999999988888666666 444999987 78999999999999999763 456678999
Q ss_pred CCCeEEEEEcCCCCEEEEEEe
Q 008196 81 SAPTAGISFSSDDKAVSSLCW 101 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sW 101 (574)
..+++|=.|.|||+.++++.-
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred CCCcccccccCCCceEEEEec
Confidence 999999999999999999763
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.1e-08 Score=108.83 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=84.7
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|+++|.+||.|..+|.|.|||..+.+.+..+.+++..-+.||+|.. .++.+|+.|+.|.+||++........+.+|
T Consensus 224 ~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H 300 (484)
T KOG0305|consen 224 KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGH 300 (484)
T ss_pred EECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcc
Confidence 38899999999999999999999999999999984545459999983 559999999999999997655555568999
Q ss_pred CCCeEEEEEcCCCCEEEEEE
Q 008196 81 SAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~s 100 (574)
...|+.+.|++|+.++++++
T Consensus 301 ~qeVCgLkws~d~~~lASGg 320 (484)
T KOG0305|consen 301 RQEVCGLKWSPDGNQLASGG 320 (484)
T ss_pred cceeeeeEECCCCCeeccCC
Confidence 99999999999999999965
No 88
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.76 E-value=7.1e-08 Score=98.16 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=86.2
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
+||.+|.+|++++.|..+.||-..+|+.+.++.+|.+.| .||+...+.+ .+++|+.|.+++|||+.+...+. .+ ..
T Consensus 17 KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGav-W~~Did~~s~-~liTGSAD~t~kLWDv~tGk~la-~~-k~ 92 (327)
T KOG0643|consen 17 KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAV-WCCDIDWDSK-HLITGSADQTAKLWDVETGKQLA-TW-KT 92 (327)
T ss_pred EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceE-EEEEecCCcc-eeeeccccceeEEEEcCCCcEEE-Ee-ec
Confidence 489999999999999999999999999999999999999 6669999874 49999999999999997754443 33 33
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCCcC
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
..+|..+.|+.+|.+++...-+..+.
T Consensus 93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~ 118 (327)
T KOG0643|consen 93 NSPVKRVDFSFGGNLILASTDKQMGY 118 (327)
T ss_pred CCeeEEEeeccCCcEEEEEehhhcCc
Confidence 45899999999999888876555544
No 89
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.75 E-value=4.3e-08 Score=110.06 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=96.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC-CCCceeEEeccC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT-GRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~-~~~~ll~tl~gH 80 (574)
|||||++||.+--|++|+||-+++-+..-.+=||.-+| .||.++||+ .+++|||.|++|+||-+. +.| ...+.+|
T Consensus 516 ~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV-~smDIS~DS-klivTgSADKnVKiWGLdFGDC--HKS~fAH 591 (888)
T KOG0306|consen 516 VSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV-LSMDISPDS-KLIVTGSADKNVKIWGLDFGDC--HKSFFAH 591 (888)
T ss_pred EcCCCcEEEEEeccCeEEEEEecceeeeeeecccccce-eEEeccCCc-CeEEeccCCCceEEeccccchh--hhhhhcc
Confidence 79999999999999999999999988888888888777 888999998 789999999999999884 443 3468999
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCcceeEecccCC
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALLGGAVG 126 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~ 126 (574)
.+.|.+|.|-|+...+++++ +++++-.|+...-..+..+.++..
T Consensus 592 dDSvm~V~F~P~~~~FFt~g--KD~kvKqWDg~kFe~iq~L~~H~~ 635 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCG--KDGKVKQWDGEKFEEIQKLDGHHS 635 (888)
T ss_pred cCceeEEEEcccceeEEEec--CcceEEeechhhhhhheeeccchh
Confidence 99999999999999999987 445554454334444444444443
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.75 E-value=3.3e-08 Score=102.19 Aligned_cols=98 Identities=19% Similarity=0.284 Sum_probs=76.6
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCC------------C------ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcE
Q 008196 1 MYNCKDEHLASISLSGDLILHNLAS------------G------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL 62 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~T------------g------~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtV 62 (574)
.|++||.++|+|+.|..|+|.|++. | -.++++-.|.+.| .+|.|+|.. .+|++|+.|++|
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~dev-n~l~FHPre-~ILiS~srD~tv 196 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEV-NDLDFHPRE-TILISGSRDNTV 196 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcc-cceeecchh-heEEeccCCCeE
Confidence 3899999999999999999999862 1 1356666777777 888999986 889999999999
Q ss_pred EEEeCCCCC-ceeEEeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 63 HLWDTTGRS-PKVSWLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 63 rLWDl~~~~-~ll~tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
++||+.... ...........+|.++.|+|.|.+|+.+.
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT 235 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec
Confidence 999994321 11112233455799999999999998843
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.75 E-value=2.7e-08 Score=100.84 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=87.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+|+|+|||+|+.|..|-+||+..--|++.|..+...| +.|.|+.|| ++||+|+.|..|-|=++.+...+ +-..|.
T Consensus 197 f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV-RTlSFS~dg-~~lASaSEDh~IDIA~vetGd~~--~eI~~~ 272 (313)
T KOG1407|consen 197 FDPDGRYFATGSADALVSLWDVDELICERCISRLDWPV-RTLSFSHDG-RMLASASEDHFIDIAEVETGDRV--WEIPCE 272 (313)
T ss_pred ECCCCceEeeccccceeeccChhHhhhheeeccccCce-EEEEeccCc-ceeeccCccceEEeEecccCCeE--EEeecc
Confidence 89999999999999999999999888999999777666 999999999 67999999999999998765433 345677
Q ss_pred CCeEEEEEcCCCCEEEEEEecCCc
Q 008196 82 APTAGISFSSDDKAVSSLCWQRAK 105 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~sg 105 (574)
++...|+|+|....|+-++-|+++
T Consensus 273 ~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 273 GPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred CCceeEEecCCCceeeEEecCCCC
Confidence 889999999999999999878766
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.75 E-value=7e-08 Score=99.90 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=83.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCC-eEEEEEeCCCcEEEEeCCCCCceeEEeccCCC
Q 008196 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 4 pDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr-~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~ 82 (574)
.+|.|+|+|+.|-+|+|||+.+...+..+-.|.+.+ ++|.|.++-. .-|++|+.||.|.+|+... ..++.++++|..
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsi-taL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~H~~ 128 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSI-TALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKAHKG 128 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccce-EEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeeccccc
Confidence 468899999999999999999988888988887767 8889988642 2489999999999999977 467889999999
Q ss_pred CeEEEEEcCCCCEEEEEEec
Q 008196 83 PTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 83 ~VtSVaFSPDG~~LaS~sWD 102 (574)
.|+.++++|.++.-++.+.|
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D 148 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGD 148 (362)
T ss_pred ccceeEecCCCceEEEEcCC
Confidence 99999999999988885533
No 93
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.74 E-value=2.3e-08 Score=108.27 Aligned_cols=127 Identities=16% Similarity=0.159 Sum_probs=94.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC-
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH- 80 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH- 80 (574)
.+||.+.+++++.||.|.|||+.+...+++|++|.+.+ .||.+++||.+ |-+|+.|++|+.||++... .+..|
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa-scIdis~dGtk-lWTGGlDntvRcWDlregr----qlqqhd 590 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA-SCIDISKDGTK-LWTGGLDNTVRCWDLREGR----QLQQHD 590 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCc-eeEEecCCCce-eecCCCccceeehhhhhhh----hhhhhh
Confidence 47899999999999999999999999999999999888 99999999955 9999999999999996532 23344
Q ss_pred -CCCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCcceeEecccCCCeEeccCCCCCC
Q 008196 81 -SAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 138 (574)
Q Consensus 81 -~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~dsVi~PDPlps~ 138 (574)
...|+++.++|++.+|+.+--+ +.+.+-.........+ +.++.+|+.....+++
T Consensus 591 F~SQIfSLg~cP~~dWlavGMen--s~vevlh~skp~kyql--hlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 591 FSSQIFSLGYCPTGDWLAVGMEN--SNVEVLHTSKPEKYQL--HLHESCVLSLKFAYCG 645 (705)
T ss_pred hhhhheecccCCCccceeeeccc--CcEEEEecCCccceee--cccccEEEEEEecccC
Confidence 4569999999999999998633 3333332222222222 2344455555554444
No 94
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.74 E-value=2e-07 Score=98.01 Aligned_cols=104 Identities=14% Similarity=0.188 Sum_probs=85.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~ 82 (574)
+|+.+++|||+.|-...||++.+|.....+.+|+..| .++.|+.+| .|||||+.+|.|+||+..++.... .+.+...
T Consensus 73 ~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSV-t~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~-~~~~e~~ 149 (399)
T KOG0296|consen 73 HPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSV-TCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQW-KLDQEVE 149 (399)
T ss_pred CCCCceEEecCCCceEEEEEccCCcceeEecCCCCce-EEEEEccCc-eEEEecCCCccEEEEEcccCceEE-EeecccC
Confidence 6788999999999999999999999999999999988 677999998 789999999999999997644332 3444455
Q ss_pred CeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 83 PTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 83 ~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.|-=++|+|-+.+|+.++ .++.+++|.
T Consensus 150 dieWl~WHp~a~illAG~--~DGsvWmw~ 176 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGS--TDGSVWMWQ 176 (399)
T ss_pred ceEEEEecccccEEEeec--CCCcEEEEE
Confidence 577789999999998876 335555443
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=8.2e-08 Score=105.58 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=94.0
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEE--eCCCcEEEEeCCCCCceeEEec
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA--GDDGTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSg--S~DGtVrLWDl~~~~~ll~tl~ 78 (574)
.|++|+++||+|+.|+.|.|||......+..+..|...| ..++|+|-...+||+| ..|+.|++||+.+.. .+. ..
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV-KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-~i~-~v 384 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV-KALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-RID-SV 384 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCCccccEEEeccceee-eEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-Eec-cc
Confidence 389999999999999999999998778888999999888 8889999877889996 469999999997643 332 33
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCcceeEecccCC
Q 008196 79 QHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALLGGAVG 126 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~ 126 (574)
.....|.+|.|++..+-|++........+.+|..........+.++..
T Consensus 385 dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 385 DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 345679999999998877776555555666665444334444444433
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.70 E-value=1.2e-07 Score=101.58 Aligned_cols=124 Identities=20% Similarity=0.284 Sum_probs=87.8
Q ss_pred ccCCCC-EEEEEeCCCcEEEEECCCCce-------eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC-CCc
Q 008196 2 YNCKDE-HLASISLSGDLILHNLASGAK-------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSP 72 (574)
Q Consensus 2 FSpDG~-~LASGS~DGtVrIWDl~Tg~~-------l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~-~~~ 72 (574)
|++..+ +|++|+.|++|++||+..... ...+.+|...| ..++|++....+++++++|+.+.|||++. ...
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~V-eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVV-EDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcce-ehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 555544 799999999999999964322 45667777666 77799998889999999999999999974 233
Q ss_pred eeEEeccCCCCeEEEEEcCCCC-EEEEEEecCCcCEEEeccCCCcceeEecccCCC
Q 008196 73 KVSWLKQHSAPTAGISFSSDDK-AVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 127 (574)
Q Consensus 73 ll~tl~gH~~~VtSVaFSPDG~-~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~d 127 (574)
......+|.+.|+|++|+|-+. .|++++-|++ ..+++-++.......+.++.+.
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~H~de 318 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEGHEDE 318 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccCCCcc
Confidence 4456789999999999998655 5555654432 2234444444444444444443
No 97
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.70 E-value=1.6e-08 Score=105.54 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=81.0
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCC
Q 008196 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (574)
Q Consensus 4 pDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~ 83 (574)
.|++.+++|..|.+|+|||..+-.+++.+.+|.+.| .|++|. +++|++|+.|.+|++||+.+++ .+.++.+|+..
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSV-LCLqyd---~rviisGSSDsTvrvWDv~tge-~l~tlihHcea 279 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSV-LCLQYD---ERVIVSGSSDSTVRVWDVNTGE-PLNTLIHHCEA 279 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhcCCCcE-Eeeecc---ceEEEecCCCceEEEEeccCCc-hhhHHhhhcce
Confidence 367789999999999999999999999999999988 777774 3689999999999999998754 45578999999
Q ss_pred eEEEEEcCCCCEEEEEEecCCcC
Q 008196 84 TAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 84 VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
|..+.|+ ..++++++-|+...
T Consensus 280 VLhlrf~--ng~mvtcSkDrsia 300 (499)
T KOG0281|consen 280 VLHLRFS--NGYMVTCSKDRSIA 300 (499)
T ss_pred eEEEEEe--CCEEEEecCCceeE
Confidence 9999995 46788887555433
No 98
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.70 E-value=3.8e-08 Score=102.28 Aligned_cols=98 Identities=15% Similarity=0.277 Sum_probs=84.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee--EEeccCCCCeE
Q 008196 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV--SWLKQHSAPTA 85 (574)
Q Consensus 8 ~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll--~tl~gH~~~Vt 85 (574)
++|.|+.-|.|+|.|+.++++...+.+|.+.| ..|.|+|+..+|+++|+.|..|++|++.+..... .-+.+|.+.|.
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sI-Neik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSI-NEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccc-hhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 78899999999999999999999999998888 7779999988999999999999999997743222 22578999999
Q ss_pred EEEEcCCCCEEEEEEecCCcC
Q 008196 86 GISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 86 SVaFSPDG~~LaS~sWD~sg~ 106 (574)
+|.|+.+|.+|++++.|..-+
T Consensus 186 SvD~~~~gd~i~ScGmDhslk 206 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLK 206 (385)
T ss_pred EEEEcCCCCeeeccCCcceEE
Confidence 999999999999987665443
No 99
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.69 E-value=9.7e-08 Score=96.50 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=73.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCC--------------------------------
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-------------------------------- 49 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdG-------------------------------- 49 (574)
|...++.|++...|++|++||..+|..+..+... ..+ ..+.++++|
T Consensus 151 wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~V-tSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~ 228 (334)
T KOG0278|consen 151 WCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPV-TSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVE 228 (334)
T ss_pred EeccCceEEeeccCCceEEEEeccCcEEEEEecC-CCC-cceeeccCCCEEEEecCceeEEeccccccceeeccCccccc
Confidence 6667889999999999999999999988877622 122 222333333
Q ss_pred -------CeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 50 -------RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 50 -------r~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
+.++++|+.|..++.||+.+...+....++|.++|.||.|+|||...++++-| +.+.+|.
T Consensus 229 SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED--GTirlWQ 295 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED--GTIRLWQ 295 (334)
T ss_pred cccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC--ceEEEEE
Confidence 14456666666666666644333322358999999999999999999998855 4555554
No 100
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.68 E-value=9.1e-08 Score=98.45 Aligned_cols=96 Identities=22% Similarity=0.311 Sum_probs=80.8
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC--Cc------------
Q 008196 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SP------------ 72 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~--~~------------ 72 (574)
.+||+|..|-+|++-|+.+|.+-+++.+|.+.| ..|.|+|..+++|++|+.||.|++||++.. +.
T Consensus 159 cLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v-laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p 237 (397)
T KOG4283|consen 159 CLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV-LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP 237 (397)
T ss_pred eEEEEecCCCcEEEEeccCCcceeeeccccCce-EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc
Confidence 378889999999999999999999999999999 555999999999999999999999999432 11
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEEecC
Q 008196 73 KVSWLKQHSAPTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 73 ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
.++.-.+|.+.|++++|+.|+.+++++.-|.
T Consensus 238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred cccccccccceeeeeeecccchhhhhccCcc
Confidence 1223456788899999999999999976443
No 101
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.68 E-value=1.5e-07 Score=95.77 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=81.4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEec--------------------------------------------------
Q 008196 4 CKDEHLASISLSGDLILHNLASGAKAAELK-------------------------------------------------- 33 (574)
Q Consensus 4 pDG~~LASGS~DGtVrIWDl~Tg~~l~t~~-------------------------------------------------- 33 (574)
.+.++|++|+.|.+++|||+.+|+++..++
T Consensus 62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 62 WDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred CCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 456799999999999999999999877655
Q ss_pred ---CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCE
Q 008196 34 ---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPV 107 (574)
Q Consensus 34 ---gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~v 107 (574)
.+...+ ..+-|.|.+ ..|++|..||.|.+||+.+....+..-..|...|+.++|++|..++++++-|...++
T Consensus 142 kI~t~~ski-t~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 142 KIPTPDSKI-TSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL 216 (327)
T ss_pred EecCCccce-eeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcccee
Confidence 111222 333677777 558999999999999998766666667889999999999999999999987765553
No 102
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=1.6e-08 Score=112.97 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=86.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+|-+.|+|+|+.|+.+++||++...|.+.+++|. .++.+++|+|+| .++++|+.|.+|+|||...+ .....+..|.
T Consensus 120 f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~-~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~ag-k~~~ef~~~e 196 (825)
T KOG0267|consen 120 FHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT-RVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAG-KLSKEFKSHE 196 (825)
T ss_pred eccceEEeccccccccceehhhhccCceeeecCCc-ceeEEEeecCCC-ceeeccCCcceeeeeccccc-cccccccccc
Confidence 89999999999999999999999888999999865 455999999999 55999999999999999663 3455788999
Q ss_pred CCeEEEEEcCCCCEEEEEEecCC
Q 008196 82 APTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
..|.++.|+|..-.+.+++-|+.
T Consensus 197 ~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 197 GKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred ccccccccCchhhhhccCCCCce
Confidence 99999999998888877765543
No 103
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=1.1e-07 Score=97.98 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=83.2
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|++.++.|+.+++||.+++||+........++ |...++.| +|.++. . +++|+.||.|+.+|+.+.. ...+..|.
T Consensus 21 f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c-~F~d~~-~-~~~G~~dg~vr~~Dln~~~--~~~igth~ 94 (323)
T KOG1036|consen 21 FSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDC-AFADES-T-IVTGGLDGQVRRYDLNTGN--EDQIGTHD 94 (323)
T ss_pred EcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeee-eccCCc-e-EEEeccCceEEEEEecCCc--ceeeccCC
Confidence 77888889999999999999998776555555 66777555 999875 6 8999999999999997753 33578899
Q ss_pred CCeEEEEEcCCCCEEEEEEecCCcCE
Q 008196 82 APTAGISFSSDDKAVSSLCWQRAKPV 107 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~sg~v 107 (574)
.+|.||++++....+++++||+..++
T Consensus 95 ~~i~ci~~~~~~~~vIsgsWD~~ik~ 120 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSWDKTIKF 120 (323)
T ss_pred CceEEEEeeccCCeEEEcccCccEEE
Confidence 99999999998899999999976554
No 104
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.65 E-value=3.9e-07 Score=89.10 Aligned_cols=92 Identities=24% Similarity=0.438 Sum_probs=67.5
Q ss_pred ccCCCCEEEEE--eCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeC---CCcEEEEeCCCCCceeEE
Q 008196 2 YNCKDEHLASI--SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---DGTLHLWDTTGRSPKVSW 76 (574)
Q Consensus 2 FSpDG~~LASG--S~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~---DGtVrLWDl~~~~~ll~t 76 (574)
|+|+|+.||.. ..++.|.|||++ ++.+..+. ...+ ..|.|+|+|+. |+.|+. .|.|.+||+.... .+..
T Consensus 67 WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~-n~i~wsP~G~~-l~~~g~~n~~G~l~~wd~~~~~-~i~~ 140 (194)
T PF08662_consen 67 WSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPR-NTISWSPDGRF-LVLAGFGNLNGDLEFWDVRKKK-KIST 140 (194)
T ss_pred ECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCc-eEEEECCCCCE-EEEEEccCCCcEEEEEECCCCE-Eeec
Confidence 89999987654 467899999995 77777765 3344 56799999954 666654 4679999998532 2222
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEEe
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLCW 101 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~sW 101 (574)
..|. .+..++|+|||++|+++..
T Consensus 141 -~~~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 141 -FEHS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred -cccC-cEEEEEEcCCCCEEEEEEe
Confidence 3344 4789999999999999664
No 105
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.62 E-value=1.3e-07 Score=100.42 Aligned_cols=133 Identities=18% Similarity=0.212 Sum_probs=93.1
Q ss_pred ccCCCC-EEEEEeCCCcEEEEECCCCc---------eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC---
Q 008196 2 YNCKDE-HLASISLSGDLILHNLASGA---------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT--- 68 (574)
Q Consensus 2 FSpDG~-~LASGS~DGtVrIWDl~Tg~---------~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~--- 68 (574)
|..+.. .||||+.|..|+||-+..+. .+..+..|+..+ ++|.|+|+| .+|++|+++|.|.+|-..
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aV-N~vRf~p~g-elLASg~D~g~v~lWk~~~~~ 98 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAV-NVVRFSPDG-ELLASGGDGGEVFLWKQGDVR 98 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCccee-EEEEEcCCc-CeeeecCCCceEEEEEecCcC
Confidence 344444 99999999999999986532 244566777777 888999999 679999999999999864
Q ss_pred -----C-----C--CceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEecc-CCCcceeEecccCCCeEeccCCC
Q 008196 69 -----G-----R--SPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDET-TCKAETALLGGAVGDSILMPDPL 135 (574)
Q Consensus 69 -----~-----~--~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~-~~s~e~aLlg~~~~dsVi~PDPl 135 (574)
+ . ......+.+|...|..++|++|+..+++++-|.. .++++. .......+-++.+..--+.|||+
T Consensus 99 ~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns--~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 99 IFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS--VRLWDVHAGQLLAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce--EEEEEeccceeEeeccccccccceeecchh
Confidence 2 1 1234457889999999999999999999885543 333331 12222222222333344578998
Q ss_pred CCC
Q 008196 136 PSV 138 (574)
Q Consensus 136 ps~ 138 (574)
..-
T Consensus 177 ~qy 179 (434)
T KOG1009|consen 177 NQY 179 (434)
T ss_pred hhh
Confidence 755
No 106
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.62 E-value=5.8e-08 Score=103.01 Aligned_cols=102 Identities=22% Similarity=0.333 Sum_probs=86.3
Q ss_pred CccCCCCEEEEEeCCCcEEEEECC--------C--------CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEE
Q 008196 1 MYNCKDEHLASISLSGDLILHNLA--------S--------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL 64 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~--------T--------g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrL 64 (574)
.|+++|++||+|+.+|+|.+|-.. + ......+.+|...+ ..++|+|++ .++++++.|..+++
T Consensus 72 Rf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~di-ydL~Ws~d~-~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 72 RFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDI-YDLAWSPDS-NFLVSGSVDNSVRL 149 (434)
T ss_pred EEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccch-hhhhccCCC-ceeeeeeccceEEE
Confidence 389999999999999999999875 2 22344666788888 677999998 77999999999999
Q ss_pred EeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCc
Q 008196 65 WDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAK 105 (574)
Q Consensus 65 WDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg 105 (574)
||+.. ..++..+.+|...|..++|.|-++++++.+.|+..
T Consensus 150 ~Dv~~-G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~ 189 (434)
T KOG1009|consen 150 WDVHA-GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHP 189 (434)
T ss_pred EEecc-ceeEeeccccccccceeecchhhhhhhhhccCccc
Confidence 99976 34666789999999999999999999998888743
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.60 E-value=1.2e-07 Score=101.72 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=81.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
-++||+|||+|+.|..|.|||..+.+.+..+.+|.+.| .+++|-..- .-|++++.|+.|++|++... .++.++.+|.
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V-~~L~fr~gt-~~lys~s~Drsvkvw~~~~~-s~vetlyGHq 286 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAV-SSLAFRKGT-SELYSASADRSVKVWSIDQL-SYVETLYGHQ 286 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcccchhhcccccccce-eeeeeecCc-cceeeeecCCceEEEehhHh-HHHHHHhCCc
Confidence 47999999999999999999999999999999999888 777887654 44999999999999999663 3566789999
Q ss_pred CCeEEEEEcCCCCEEEEEE
Q 008196 82 APTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~s 100 (574)
+.|.+|.-..-.+.+..+.
T Consensus 287 d~v~~IdaL~reR~vtVGg 305 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTVGG 305 (479)
T ss_pred cceeeechhcccceEEecc
Confidence 9999998876666666654
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=4.5e-07 Score=103.80 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=81.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCC------C-CCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDP------N-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh------~-~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll 74 (574)
|+|++++||+.+.||.|+|||+.++.+..++.+- . ..++..++|+|+|.. ++..+.|+.|++|+..+.....
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f 224 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQF 224 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCceehe
Confidence 8999999999999999999999998876666531 1 445677799999878 6666789999999997743332
Q ss_pred EE-eccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 75 SW-LKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 75 ~t-l~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.. ...|...+.++.|+|+|+||+++. .++.+.+|+
T Consensus 225 ~Lr~~~~ss~~~~~~wsPnG~YiAAs~--~~g~I~vWn 260 (933)
T KOG1274|consen 225 KLRDKLSSSKFSDLQWSPNGKYIAAST--LDGQILVWN 260 (933)
T ss_pred eecccccccceEEEEEcCCCcEEeeec--cCCcEEEEe
Confidence 22 233445599999999999999976 445555555
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.58 E-value=1.2e-06 Score=86.33 Aligned_cols=107 Identities=11% Similarity=0.171 Sum_probs=74.8
Q ss_pred ccCCCCEEEE-EeCCCcEEEEECCCCceeEEecCCC-----CC-eEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee
Q 008196 2 YNCKDEHLAS-ISLSGDLILHNLASGAKAAELKDPN-----EQ-VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (574)
Q Consensus 2 FSpDG~~LAS-GS~DGtVrIWDl~Tg~~l~t~~gh~-----~~-Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll 74 (574)
|+++|++|+. +..++.|++||+.+++.+..+..+. .. ....++|+|+++.++++.+.++.|.+||+.+.. ..
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-~~ 242 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-VL 242 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc-EE
Confidence 7899998854 4569999999999988777664221 11 113458999997766666677889999997643 33
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 75 SWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
..+ .+...+++++|+|+|++|+++. ...+.+.+++
T Consensus 243 ~~~-~~~~~~~~~~~~~~g~~l~~~~-~~~~~i~v~d 277 (300)
T TIGR03866 243 DYL-LVGQRVWQLAFTPDEKYLLTTN-GVSNDVSVID 277 (300)
T ss_pred EEE-EeCCCcceEEECCCCCEEEEEc-CCCCeEEEEE
Confidence 222 3445789999999999998764 2344555555
No 110
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=2.5e-07 Score=96.10 Aligned_cols=98 Identities=16% Similarity=0.274 Sum_probs=81.2
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC----CCC---CceeEE
Q 008196 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT----TGR---SPKVSW 76 (574)
Q Consensus 4 pDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl----~~~---~~ll~t 76 (574)
.++++|++++.|..|.||++. |+.+..+.........+ +.+|+| ++|++++.---|++|.+ .+. -..+..
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a-avSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~ 273 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA-AVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS 273 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce-eeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence 357899999999999999996 99999998776666344 999999 67999999999999998 121 123567
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEEecCC
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
++||...|..++|+++...+++.+-|..
T Consensus 274 LkGH~saV~~~aFsn~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 274 LKGHQSAVLAAAFSNSSTRAVTVSKDGK 301 (420)
T ss_pred eccchhheeeeeeCCCcceeEEEecCCc
Confidence 8999999999999999999999885543
No 111
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.57 E-value=3.3e-07 Score=102.69 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=79.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
.+.++++|+.|.+|+||++.+++++..+.+|.+.| ++|.++ + .++++|+.|++|++||+.. ...+..+.+|...|
T Consensus 300 ~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V-~~v~~~--~-~~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V 374 (537)
T KOG0274|consen 300 DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV-NCVQLD--E-PLLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRV 374 (537)
T ss_pred cCceEeeccCCceEEEEeccCcceEEEeccccccE-EEEEec--C-CEEEEEecCceEEEEEhhh-ceeeeeecCCcceE
Confidence 34578889999999999999999999999988777 888887 3 5699999999999999985 45667899999999
Q ss_pred EEEEEcCCCCEEEEEEec
Q 008196 85 AGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 85 tSVaFSPDG~~LaS~sWD 102 (574)
.++.+... ..+++++.|
T Consensus 375 ~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 375 YSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred EEEEecCc-ceEEeeeec
Confidence 99988654 888898877
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.57 E-value=2.4e-07 Score=96.08 Aligned_cols=109 Identities=19% Similarity=0.294 Sum_probs=88.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|-..|+.+++++.|.+..+||+++|+.+..+.+|......| +-+|.. +|+++.+.|.+.++||++..-..+..++||.
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc-stHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC-STHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc-ccCCcc-eEEEEeccCceeEeccchhhcceeeeecccc
Confidence 33468899999999999999999999999999999888555 888886 8899999999999999976555677899999
Q ss_pred CCeEEEEEcCCCCEEEEEEecCCcCEEEeccCC
Q 008196 82 APTAGISFSSDDKAVSSLCWQRAKPVFIDETTC 114 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~ 114 (574)
+.|+++.|..|.+ +++++.|+..+ +|+-++.
T Consensus 358 dtVTS~vF~~dd~-vVSgSDDrTvK-vWdLrNM 388 (481)
T KOG0300|consen 358 DTVTSVVFNTDDR-VVSGSDDRTVK-VWDLRNM 388 (481)
T ss_pred cceeEEEEecCCc-eeecCCCceEE-Eeeeccc
Confidence 9999999997754 66766554433 3444333
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.9e-07 Score=94.22 Aligned_cols=97 Identities=14% Similarity=0.290 Sum_probs=82.3
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCC---eEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEe
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQ---VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~---Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl 77 (574)
.|++||++|+.+...+.++|.|.-+|..+..+.++.+. .+.+ .|.||+ +++++|+.||+|++|++.+..+.. .+
T Consensus 194 ~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a-~ftPds-~Fvl~gs~dg~i~vw~~~tg~~v~-~~ 270 (311)
T KOG1446|consen 194 EFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA-TFTPDS-KFVLSGSDDGTIHVWNLETGKKVA-VL 270 (311)
T ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE-EECCCC-cEEEEecCCCcEEEEEcCCCcEee-Ee
Confidence 38999999999999999999999999999999877543 2355 899999 779999999999999997754444 45
Q ss_pred cc-CCCCeEEEEEcCCCCEEEEEE
Q 008196 78 KQ-HSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 78 ~g-H~~~VtSVaFSPDG~~LaS~s 100 (574)
.+ |..++.|+.|+|.-.++++++
T Consensus 271 ~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 271 RGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred cCCCCCCccccccCCceeeeeecC
Confidence 55 788999999999988888875
No 114
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.54 E-value=5.9e-07 Score=91.31 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=84.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+.++++++--...|.|.|.....-+.+..++.|.... .||.|+|+|++ +|+|+.|-.|.|||+.. -.+++.+.-|.
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC-icI~f~p~Gry-fA~GsADAlvSLWD~~E-LiC~R~isRld 231 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC-ICIEFDPDGRY-FATGSADALVSLWDVDE-LICERCISRLD 231 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcce-EEEEECCCCce-EeeccccceeeccChhH-hhhheeecccc
Confidence 56666766666678999999998888999999998777 78899999955 99999999999999965 24456788899
Q ss_pred CCeEEEEEcCCCCEEEEEEecC
Q 008196 82 APTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
.+|+.++|+.||++|++++-|.
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred CceEEEEeccCcceeeccCccc
Confidence 9999999999999999988654
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.54 E-value=1.5e-07 Score=106.71 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=84.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+.....+|.++.|-.|+|+|..+.+.++.|.+|.+.+ +.++|||||++ |++++.|++|++||+.+.+.. -...-.
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri-td~~FS~DgrW-lisasmD~tIr~wDlpt~~lI--D~~~vd 617 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI-TDMTFSPDGRW-LISASMDSTIRTWDLPTGTLI--DGLLVD 617 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce-eeeEeCCCCcE-EEEeecCCcEEEEeccCccee--eeEecC
Confidence 34455678899999999999999999999999999998 78899999955 999999999999999764332 222345
Q ss_pred CCeEEEEEcCCCCEEEEEEecCCcCEEE
Q 008196 82 APTAGISFSSDDKAVSSLCWQRAKPVFI 109 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~sg~viv 109 (574)
.++.++.|+|+|.+|++..-|..+..+|
T Consensus 618 ~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred CcceeeEECCCCCEEEEEEecCceEEEE
Confidence 6789999999999999987665554443
No 116
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.53 E-value=5.5e-08 Score=103.33 Aligned_cols=101 Identities=18% Similarity=0.264 Sum_probs=81.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~--~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
|-++...|++|+.|..|++|+...++ .+.++.+..+.+ ..+.|.+++++ ++.++.|+.+++|++... ....++.+
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~i-t~~d~d~~~~~-~iAas~d~~~r~Wnvd~~-r~~~TLsG 259 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNI-TSIDFDSDNKH-VIAASNDKNLRLWNVDSL-RLRHTLSG 259 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCc-ceeeecCCCce-EEeecCCCceeeeeccch-hhhhhhcc
Confidence 45666789999999999999997655 466777777777 67799999855 777889999999999763 34568999
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCCc
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRAK 105 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~sg 105 (574)
|.+.|+++.|......+++++.|+..
T Consensus 260 HtdkVt~ak~~~~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSRVVSGSADRTI 285 (459)
T ss_pred cccceeeehhhccccceeeccccchh
Confidence 99999999998777778886655443
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.53 E-value=2.6e-06 Score=83.94 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=71.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeE
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~Vt 85 (574)
++++++++.|+.|++||+.+++.+..+..+.. + .+++|+|+++.++++++.|+.|++||+.+... ...+..+.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~-~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-P-RGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-C-CceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCCC-cc
Confidence 46789999999999999999998888886543 4 56799999977667888999999999976432 334444443 57
Q ss_pred EEEEcCCCCEEEEEEe
Q 008196 86 GISFSSDDKAVSSLCW 101 (574)
Q Consensus 86 SVaFSPDG~~LaS~sW 101 (574)
.++|+|+++.++..+.
T Consensus 77 ~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 77 LFALHPNGKILYIANE 92 (300)
T ss_pred EEEECCCCCEEEEEcC
Confidence 8899999998876553
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=7.6e-07 Score=95.91 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=69.1
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCC---------CceeEEecCCCCCeEEEEEEccCC-CeEEEEEeCCCcEEEEeCCCC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGR 70 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~T---------g~~l~t~~gh~~~Vvs~LafSPdG-r~LLaSgS~DGtVrLWDl~~~ 70 (574)
+|+-||.+|+||+.||.|++|++.. -+.++.|.+|.-.| ..+...+.| +..|+|+|.|.+|++||+...
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI-TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI-TDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCccee-EEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 4889999999999999999999742 24577888887766 666665542 345999999999999999664
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCEEEE
Q 008196 71 SPKVSWLKQHSAPTAGISFSSDDKAVSS 98 (574)
Q Consensus 71 ~~ll~tl~gH~~~VtSVaFSPDG~~LaS 98 (574)
..++ -......+.+|+..|-.+.++.
T Consensus 209 ~LLl--ti~fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 209 VLLL--TITFPSSIKAVALDPAERVVYI 234 (476)
T ss_pred eeeE--EEecCCcceeEEEcccccEEEe
Confidence 3332 1223445777777776666655
No 119
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.51 E-value=2.1e-07 Score=102.98 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=80.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC-CCCeE
Q 008196 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-SAPTA 85 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH-~~~Vt 85 (574)
+.||+++.|-+|+|||+.+++....+.+|+++| ..++|+|||+ .+++.|.||+|++|+.......++.-.+. ...-.
T Consensus 691 dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI-f~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgA 768 (1012)
T KOG1445|consen 691 DVLAVASYDSTIELWDLANAKLYSRLVGHTDQI-FGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGA 768 (1012)
T ss_pred hHhhhhhccceeeeeehhhhhhhheeccCcCce-eEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcce
Confidence 478899999999999999999999999999999 6669999995 59999999999999997655444333222 22356
Q ss_pred EEEEcCCCCEEEEEEecCCcC
Q 008196 86 GISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 86 SVaFSPDG~~LaS~sWD~sg~ 106 (574)
.|.|..||++|+..++|+...
T Consensus 769 Ri~wacdgr~viv~Gfdk~Se 789 (1012)
T KOG1445|consen 769 RILWACDGRIVIVVGFDKSSE 789 (1012)
T ss_pred eEEEEecCcEEEEecccccch
Confidence 788999999999998887655
No 120
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.50 E-value=2.9e-07 Score=102.79 Aligned_cols=105 Identities=24% Similarity=0.257 Sum_probs=86.4
Q ss_pred cCCCCEEEEEeC-----CCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC---cee
Q 008196 3 NCKDEHLASISL-----SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PKV 74 (574)
Q Consensus 3 SpDG~~LASGS~-----DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~---~ll 74 (574)
+|+|+++|+++. ...|+||+..+...+..+.+|.-.| +.|+|+||| ++|++.|.|+++.+|...... ...
T Consensus 534 s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV-T~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~f 611 (764)
T KOG1063|consen 534 SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV-TRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRF 611 (764)
T ss_pred cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE-EEEEECCCC-cEEEEeecCceEEeeeeecccchhhhh
Confidence 688999999984 4568999999988888899888777 777999999 569999999999999983221 122
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 75 SWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
...+.|..-|++..|+|++++++|++ +++.+.+|.
T Consensus 612 a~~k~HtRIIWdcsW~pde~~FaTaS--RDK~VkVW~ 646 (764)
T KOG1063|consen 612 ACLKAHTRIIWDCSWSPDEKYFATAS--RDKKVKVWE 646 (764)
T ss_pred ccccccceEEEEcccCcccceeEEec--CCceEEEEe
Confidence 23688999999999999999999998 666666665
No 121
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.49 E-value=3.6e-07 Score=97.86 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=75.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce---eEE------------------ecCCCCCeEEEEEEccCCCeEEEEEeCCCcEE
Q 008196 5 KDEHLASISLSGDLILHNLASGAK---AAE------------------LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~---l~t------------------~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVr 63 (574)
.|+|+|.|+.|..|.|||+.--.. ..+ ..+|+..+ -.|+|+.+-+++||+||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdav-l~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAV-LALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHH-HHHHhccccceeEEecCCCceEE
Confidence 478999999999999999863211 111 11455555 56688888889999999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEEecCCc
Q 008196 64 LWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKAVSSLCWQRAK 105 (574)
Q Consensus 64 LWDl~~~~~ll~tl~gH~~~VtSVaFSP-DG~~LaS~sWD~sg 105 (574)
+||+....+ ...+..|...|.++.|+| ...+|+++++|+..
T Consensus 270 lWD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 270 LWDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred EEEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceE
Confidence 999976443 446778999999999986 46788888877543
No 122
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.48 E-value=8.2e-07 Score=91.35 Aligned_cols=107 Identities=18% Similarity=0.273 Sum_probs=83.5
Q ss_pred ccCCCC-EEEEEeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC--------
Q 008196 2 YNCKDE-HLASISLSGDLILHNLASG-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-------- 71 (574)
Q Consensus 2 FSpDG~-~LASGS~DGtVrIWDl~Tg-~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~-------- 71 (574)
|||+.+ +|++|+.||.|+|||.+.- ..+..+.+|...+ .+|+|+|...+||++||.|..|.+|....-.
T Consensus 222 fNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv-W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~ 300 (370)
T KOG1007|consen 222 FNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV-WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFE 300 (370)
T ss_pred CCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE-EEEEecCccceEEEecCCCceeEEEeccccccccccccc
Confidence 788877 6889999999999999754 4588888888777 6779999988999999999999999872100
Q ss_pred --------------------ceeEEeccCCCCeEEEEEcC-CCCEEEEEEecCCcCEEEec
Q 008196 72 --------------------PKVSWLKQHSAPTAGISFSS-DDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 72 --------------------~ll~tl~gH~~~VtSVaFSP-DG~~LaS~sWD~sg~viv~e 111 (574)
-.+.++..|.+.|.+++|+. |--++++.++| |++++..
T Consensus 301 ~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD--GRviIs~ 359 (370)
T KOG1007|consen 301 DDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD--GRVIISS 359 (370)
T ss_pred cccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC--ceEEeec
Confidence 01346778999999999974 55566667766 5555554
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=7.9e-07 Score=89.76 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=79.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC---ceeEEecCCCCCeEEEEEEcc--CCCeEEEEEeCCCcEEEEeCCC-CCceeEEe
Q 008196 4 CKDEHLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTG-RSPKVSWL 77 (574)
Q Consensus 4 pDG~~LASGS~DGtVrIWDl~Tg---~~l~t~~gh~~~Vvs~LafSP--dGr~LLaSgS~DGtVrLWDl~~-~~~ll~tl 77 (574)
..|+.|||++.|++|+|+..... +.+..+.+|.+.+..+ +|.. .| .+|++|++||.|.||...+ +.......
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv-~wahPk~G-~iLAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKV-AWAHPKFG-TILASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEE-eecccccC-cEeeEeecCceEEEEecCCCchhhhhhh
Confidence 46889999999999999999764 4588999999999555 8855 55 7899999999999999854 33445567
Q ss_pred ccCCCCeEEEEEcCCCC--EEEEEEecCCcCE
Q 008196 78 KQHSAPTAGISFSSDDK--AVSSLCWQRAKPV 107 (574)
Q Consensus 78 ~gH~~~VtSVaFSPDG~--~LaS~sWD~sg~v 107 (574)
..|...|++|+|-|.+. .|++++-|....+
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSV 130 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEE
Confidence 78999999999988654 5555655544333
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.47 E-value=2.2e-07 Score=104.82 Aligned_cols=92 Identities=18% Similarity=0.350 Sum_probs=75.2
Q ss_pred CCCEEEEEeCCCcEEEEECCC---CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 5 KDEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~T---g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
+.++||+++..|.|.+||+.. .+.+..|..|...+ .+++|++.-.++|++|++||+||+||++... -..++.+..
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~-~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nS 176 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSA-NKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNS 176 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccce-eeeeeccCCccEEEecCCCceEEEEeeeccc-ccccccccc
Confidence 457999999999999999976 45667888888777 8889999888999999999999999996632 334567778
Q ss_pred CCeEEEEEcCCCC-EEEE
Q 008196 82 APTAGISFSSDDK-AVSS 98 (574)
Q Consensus 82 ~~VtSVaFSPDG~-~LaS 98 (574)
..|+.|.|+|... .+++
T Consensus 177 ESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred hhhhceeeccCCCceEEE
Confidence 8899999998544 4444
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=1.1e-06 Score=94.56 Aligned_cols=96 Identities=19% Similarity=0.322 Sum_probs=79.6
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC-------C-CCcee
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT-------G-RSPKV 74 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~-------~-~~~ll 74 (574)
+++|.||+.|...|.|++|.+.+|..+..+.+|...+ +||.|+-|| .+|+|||.||.|.+|++. . .-..+
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~I-TcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSI-TCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHhhccce-eEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 5789999999999999999999999999998888777 999999998 559999999999999982 1 12335
Q ss_pred EEeccCCCCeEEEEEcCC--CCEEEEEE
Q 008196 75 SWLKQHSAPTAGISFSSD--DKAVSSLC 100 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPD--G~~LaS~s 100 (574)
..+..|.-.|+++...+. ..+|+|++
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEec
Confidence 678899999999987644 45677744
No 126
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=1.1e-06 Score=97.83 Aligned_cols=97 Identities=22% Similarity=0.369 Sum_probs=79.3
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCc--eeEE--------ec-CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGA--KAAE--------LK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS 71 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~--~l~t--------~~-gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~ 71 (574)
..+..++|+|+-|+.|+|||+.+|. .+.. +. ++...+ +.++-++.| .+|++|+..+.+++||.++.
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si-YSLA~N~t~-t~ivsGgtek~lr~wDprt~- 203 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI-YSLAMNQTG-TIIVSGGTEKDLRLWDPRTC- 203 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce-eeeecCCcc-eEEEecCcccceEEeccccc-
Confidence 3567799999999999999999872 2222 22 566666 777889988 78999999999999999884
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 72 PKVSWLKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 72 ~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
..+..+.||.+-|.++-.+.||..+++++.|
T Consensus 204 ~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 204 KKIMKLRGHTDNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred cceeeeeccccceEEEEEcCCCCeEeecCCC
Confidence 4556788999999999999999999996544
No 127
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.45 E-value=9.8e-07 Score=98.31 Aligned_cols=91 Identities=14% Similarity=0.295 Sum_probs=77.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|-|||..|+.+. +..+.|||...|..+.++++|++.| .||+|+.||+ .+++|+.|+.|.+|...-...+ --.|.
T Consensus 20 fkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtV-ycVAys~dGk-rFASG~aDK~VI~W~~klEG~L---kYSH~ 93 (1081)
T KOG1538|consen 20 FKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTV-YCVAYAKDGK-RFASGSADKSVIIWTSKLEGIL---KYSHN 93 (1081)
T ss_pred ECCCCceEEEec-CCEEEEEeCCCcccccccccccceE-EEEEEccCCc-eeccCCCceeEEEeccccccee---eeccC
Confidence 789999887774 5579999999999999999999888 8889999994 5999999999999998543332 23699
Q ss_pred CCeEEEEEcCCCCEEEE
Q 008196 82 APTAGISFSSDDKAVSS 98 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS 98 (574)
+.|.|+.|+|-.+.|++
T Consensus 94 D~IQCMsFNP~~h~Las 110 (1081)
T KOG1538|consen 94 DAIQCMSFNPITHQLAS 110 (1081)
T ss_pred CeeeEeecCchHHHhhh
Confidence 99999999998777777
No 128
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.44 E-value=2.1e-06 Score=92.23 Aligned_cols=101 Identities=17% Similarity=0.269 Sum_probs=77.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce-eEEeccCCCCe
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHSAPT 84 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l-l~tl~gH~~~V 84 (574)
.+.||+|+.|.+|++||+.+|++..++..|.+.| .++.|+|....+|++|+.|++|.|.|++..... ..+ ...+.|
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V-q~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--k~~g~V 332 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKV-QTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW--KFDGEV 332 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCce-eEEEecCCCceEEEeccccceEEeeeccCccccCceE--Eeccce
Confidence 3589999999999999999999999999666666 999999988899999999999999999631111 111 123468
Q ss_pred EEEEEcCCCCEEEEEEecCCcCEEEe
Q 008196 85 AGISFSSDDKAVSSLCWQRAKPVFID 110 (574)
Q Consensus 85 tSVaFSPDG~~LaS~sWD~sg~viv~ 110 (574)
-.++|.+.....+.++-| +|.+...
T Consensus 333 Ekv~w~~~se~~f~~~td-dG~v~~~ 357 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTD-DGTVYYF 357 (463)
T ss_pred EEEEecCCCceeEEEecC-CceEEee
Confidence 899999887766655533 3444433
No 129
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.43 E-value=1.1e-06 Score=93.28 Aligned_cols=126 Identities=18% Similarity=0.247 Sum_probs=86.7
Q ss_pred ccCCC-CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG-~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|+|-. +.|++++.|.+|.|||+.+|+.+.++. |.+.| ..+.|+.|| .+|++.|.|+.|+|||.+..... ..-.+|
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i-~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v-~e~~~h 214 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMV-YSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVV-SEGVAH 214 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeE-EEEEeccCC-ceeeeecccceeEEEcCCCCcEe-eecccc
Confidence 45544 478899999999999999999988888 66666 777999999 66999999999999999875443 333566
Q ss_pred CCC-eEEEEEcCCCCEEEEEEecCCcC---EEEeccCCCcceeEecccCCCeEecc
Q 008196 81 SAP-TAGISFSSDDKAVSSLCWQRAKP---VFIDETTCKAETALLGGAVGDSILMP 132 (574)
Q Consensus 81 ~~~-VtSVaFSPDG~~LaS~sWD~sg~---viv~e~~~s~e~aLlg~~~~dsVi~P 132 (574)
.+. -..+.|-.+|. |++.++.+... .+|+..+....+.+........+++|
T Consensus 215 eG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~P 269 (472)
T KOG0303|consen 215 EGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLP 269 (472)
T ss_pred cCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEe
Confidence 543 45667888888 55544444332 23333334444444444444455555
No 130
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.43 E-value=1.5e-06 Score=90.30 Aligned_cols=94 Identities=24% Similarity=0.277 Sum_probs=74.9
Q ss_pred ccCCCC--EEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC-CCCceeEEec
Q 008196 2 YNCKDE--HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT-GRSPKVSWLK 78 (574)
Q Consensus 2 FSpDG~--~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~-~~~~ll~tl~ 78 (574)
|.++-. +|++|+.||.|.||+...+.++..+++|.++| +.|+++|.| +|.++.+.|+.+++||+. ++...+..+
T Consensus 91 F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V-t~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L- 167 (362)
T KOG0294|consen 91 FYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV-TDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNL- 167 (362)
T ss_pred ecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc-ceeEecCCC-ceEEEEcCCceeeeehhhcCccceeecc-
Confidence 444443 89999999999999999999999999999996 888999998 778999999999999994 432222222
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE
Q 008196 79 QHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.|. .+.|.|+|.|.+++..+
T Consensus 168 ~~~--at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 168 KNK--ATLVSWSPQGDHFVVSG 187 (362)
T ss_pred CCc--ceeeEEcCCCCEEEEEe
Confidence 333 24499999999888754
No 131
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=3.8e-06 Score=91.14 Aligned_cols=94 Identities=23% Similarity=0.410 Sum_probs=68.1
Q ss_pred CccCCCCEEEEEeCC---CcEEEEECCCCce--eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEE--eCCCCCce
Q 008196 1 MYNCKDEHLASISLS---GDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRSPK 73 (574)
Q Consensus 1 ~FSpDG~~LASGS~D---GtVrIWDl~Tg~~--l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLW--Dl~~~~~l 73 (574)
.|+|||++|+.++.+ .+|++||+.+++. +..+.++. ..++|+|||++++++.+.||.+.|| |+.+..
T Consensus 210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~----~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-- 283 (429)
T PRK01742 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN----GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-- 283 (429)
T ss_pred eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc----CceeECCCCCEEEEEEecCCcEEEEEEECCCCC--
Confidence 489999999987753 4699999988764 33344333 2359999997766666778887776 444432
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 74 VSWLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 74 l~tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
...+..|...+.+++|+|||+.|+..+
T Consensus 284 ~~~lt~~~~~~~~~~wSpDG~~i~f~s 310 (429)
T PRK01742 284 PSQLTSGAGNNTEPSWSPDGQSILFTS 310 (429)
T ss_pred eEeeccCCCCcCCEEECCCCCEEEEEE
Confidence 345666777788999999999888765
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.40 E-value=1e-06 Score=98.61 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=76.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEE
Q 008196 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (574)
Q Consensus 8 ~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSV 87 (574)
.++|||.|.+|++|.- ++++.+|.+|.+-| +.|++-+++ . +++|+.||.|++||+.+. .+..+.+|..-|.++
T Consensus 153 ~~vTgsaDKtIklWk~--~~~l~tf~gHtD~V-RgL~vl~~~-~-flScsNDg~Ir~w~~~ge--~l~~~~ghtn~vYsi 225 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG--GTLLKTFSGHTDCV-RGLAVLDDS-H-FLSCSNDGSIRLWDLDGE--VLLEMHGHTNFVYSI 225 (745)
T ss_pred cEEeccCcceeeeccC--Cchhhhhccchhhe-eeeEEecCC-C-eEeecCCceEEEEeccCc--eeeeeeccceEEEEE
Confidence 8899999999999987 78899999987666 999999985 5 899999999999999775 345789999999999
Q ss_pred EEcCCCCEEEEEEecCC
Q 008196 88 SFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 88 aFSPDG~~LaS~sWD~s 104 (574)
+...++..|++++-|+.
T Consensus 226 s~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 226 SMALSDGLIVSTGEDRT 242 (745)
T ss_pred EecCCCCeEEEecCCce
Confidence 97778888888665543
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=2.2e-06 Score=98.36 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=79.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc--
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-- 79 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g-- 79 (574)
|+-+|+++|.|+.|-.|+|.+..+......+++|.+.| .+|.|+|.+ .|||+.+.||.|++||+..+... .++.+
T Consensus 104 v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV-l~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~-~tl~~v~ 180 (933)
T KOG1274|consen 104 VSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV-LQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILS-KTLTGVD 180 (933)
T ss_pred EecCCcEEEeecCceeEEEEeccccchheeecccCCce-eeeeEcCCC-CEEEEEecCceEEEEEcccchhh-hhcccCC
Confidence 78899999999999999999999999999999999888 888999998 78999999999999999654322 12211
Q ss_pred ------CCCCeEEEEEcCCCCEEEEEEec
Q 008196 80 ------HSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 80 ------H~~~VtSVaFSPDG~~LaS~sWD 102 (574)
....+..++|+|+|..++..+-|
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d 209 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVD 209 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccC
Confidence 13347788999997777764433
No 134
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.37 E-value=2.4e-06 Score=88.11 Aligned_cols=64 Identities=16% Similarity=0.401 Sum_probs=55.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc---eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC
Q 008196 5 KDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~---~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~ 69 (574)
|-++|.+.+-|-++.|||+++|. ...++-.|...| ..|+|..++..++++.|.||.|++||++.
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV-~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV-YDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcce-eEEEeccCccceEEEecCCCcEEEEEecc
Confidence 34699999999999999999873 356777888888 77799999999999999999999999953
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.36 E-value=2.1e-06 Score=96.41 Aligned_cols=106 Identities=18% Similarity=0.274 Sum_probs=89.4
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCC---CCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDP---NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh---~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
.|+.+++++++.|..|+|||+.+|+.+..|++. .+..+.+ ...|.| .||++.+.|+++.++|+.+.+ ++..+.|
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv-~lDPSg-iY~atScsdktl~~~Df~sgE-cvA~m~G 681 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV-ILDPSG-IYLATSCSDKTLCFVDFVSGE-CVAQMTG 681 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE-EECCCc-cEEEEeecCCceEEEEeccch-hhhhhcC
Confidence 467789999999999999999999999999864 4556566 789998 669999999999999996643 4457899
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccC
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETT 113 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~ 113 (574)
|...|+.|.|.+|.++|++.+.| +.+.+|...
T Consensus 682 HsE~VTG~kF~nDCkHlISvsgD--gCIFvW~lp 713 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDCKHLISVSGD--GCIFVWKLP 713 (1080)
T ss_pred cchheeeeeecccchhheeecCC--ceEEEEECc
Confidence 99999999999999999998744 667677633
No 136
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.35 E-value=8.8e-07 Score=91.98 Aligned_cols=102 Identities=20% Similarity=0.310 Sum_probs=86.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC------CCC----------
Q 008196 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT------TGR---------- 70 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl------~~~---------- 70 (574)
..+.+++.|.+.+||.+++|.|+.++.+|.+.+ .+|.|++.+ .|+++++.|++-+||.. ...
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSV-Nsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSV-NSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccce-eeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 378899999999999999999999999999999 888999987 88999999999999983 110
Q ss_pred -----------------------CceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEe
Q 008196 71 -----------------------SPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFID 110 (574)
Q Consensus 71 -----------------------~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~ 110 (574)
...+..+.+|...|.+..|-..|+.+++++||+...++-.
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV 301 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV 301 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeee
Confidence 0013457889999999999999999999999987665433
No 137
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=1.5e-06 Score=87.80 Aligned_cols=110 Identities=14% Similarity=0.182 Sum_probs=80.8
Q ss_pred CEEEEEeCCCcEEEEECCCCce--eEEecCCCCCeEEEEEEccC---CCeEEEEEeCCCcEEEEeCCCC--CceeEEecc
Q 008196 7 EHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRN---SRHLLVTAGDDGTLHLWDTTGR--SPKVSWLKQ 79 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~--l~t~~gh~~~Vvs~LafSPd---Gr~LLaSgS~DGtVrLWDl~~~--~~ll~tl~g 79 (574)
+.|++|++|..|+||+...+.. ...|.+|.+.+ +.++|.|. .+..|++|+.||+|.||-.... .-....+..
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV-RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV-RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchhh-hhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 5799999999999999987643 44578888777 88899995 3567999999999999987432 122223556
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCccee
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETA 119 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~a 119 (574)
....++.+.||..|..|+..+.| .++.++..+..++..
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~Gd--Nkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGD--NKVTLWKENVDGKWE 292 (299)
T ss_pred CCcceEEEEEeccccEEEEecCC--cEEEEEEeCCCCcEE
Confidence 77789999999999999887633 444444334444433
No 138
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.34 E-value=2.5e-06 Score=88.22 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=58.0
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCC-eEEEEEeCCCcEEEEeCCCCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRS 71 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr-~LLaSgS~DGtVrLWDl~~~~ 71 (574)
|+.||..+++|+.|+++++||+.+++ +.++..|.+.+ ++|.|-+... ..|+||+.|++||+||++...
T Consensus 80 WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pv-kt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 80 WSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPV-KTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred EccCCceEEeeccCCceEEEEccCCC-eeeeeecccce-eEEEEecCCCcceeEecccccceeecccCCCC
Confidence 78899999999999999999999984 56777788777 7779987652 368999999999999997643
No 139
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.34 E-value=5.6e-07 Score=94.67 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=85.8
Q ss_pred ccCCCC-EEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~-~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|||... .|++|+.|+.|.|||+.++..+..+... ... ..|+|+|.+ ..+++|+.|..++.||+......+....+|
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRT-N~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MRT-NTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceeeee-ccc-cceecCccc-cceeeccccccceehhhhhhcccchhhccc
Confidence 666544 7888889999999999998876655422 122 344999976 668999999999999997656667778999
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCCcCEEEe
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRAKPVFID 110 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~sg~viv~ 110 (574)
...|.+|+|||.|+-|+++++|+...++-.
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeec
Confidence 999999999999999999999988776543
No 140
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.31 E-value=3.2e-06 Score=90.18 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=76.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCC----CCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEec
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPN----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~----~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~ 78 (574)
+.+|..|.+++.|.++.+.|+.+.+....+.... ..+ +.+.|||++ .|+++||.||.|+||++.+.. +...+.
T Consensus 350 s~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw-trvvfSpd~-~YvaAGS~dgsv~iW~v~tgK-lE~~l~ 426 (459)
T KOG0288|consen 350 SMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW-TRVVFSPDG-SYVAAGSADGSVYIWSVFTGK-LEKVLS 426 (459)
T ss_pred ccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc-ceeEECCCC-ceeeeccCCCcEEEEEccCce-EEEEec
Confidence 5688899999999999999998887776666321 224 455899998 569999999999999997643 333333
Q ss_pred c-CCC-CeEEEEEcCCCCEEEEEEecCCcCEEE
Q 008196 79 Q-HSA-PTAGISFSSDDKAVSSLCWQRAKPVFI 109 (574)
Q Consensus 79 g-H~~-~VtSVaFSPDG~~LaS~sWD~sg~viv 109 (574)
. +.. .|++++|+|.|..++++. +.+.+.+
T Consensus 427 ~s~s~~aI~s~~W~~sG~~Llsad--k~~~v~l 457 (459)
T KOG0288|consen 427 LSTSNAAITSLSWNPSGSGLLSAD--KQKAVTL 457 (459)
T ss_pred cCCCCcceEEEEEcCCCchhhccc--CCcceEe
Confidence 3 333 699999999999999875 4444443
No 141
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.30 E-value=2.2e-06 Score=93.80 Aligned_cols=96 Identities=14% Similarity=0.270 Sum_probs=73.6
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCC---------Cce-------------------------------eEEecCCCCCeE
Q 008196 1 MYNCKDEHLASISLSGDLILHNLAS---------GAK-------------------------------AAELKDPNEQVL 40 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~T---------g~~-------------------------------l~t~~gh~~~Vv 40 (574)
.|++||.-|++++.||.|+||...- +.. +-.++.|.+-+
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGii- 189 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLV- 189 (737)
T ss_pred ccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEE-
Confidence 4899999999999999999998631 010 11233555444
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEe
Q 008196 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCW 101 (574)
Q Consensus 41 s~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sW 101 (574)
.++.|++.+ .+|++||.|...++||..+. .+.....|..+|++|+|+|| +.++.+++
T Consensus 190 L~~~W~~~s-~lI~sgGED~kfKvWD~~G~--~Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 190 LSLSWSTQS-NIIASGGEDFRFKIWDAQGA--NLFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred EEeecCccc-cceeecCCceeEEeecccCc--ccccCChhccceeeeeeccc-cceeeeee
Confidence 777999997 78999999999999999774 34466789999999999999 55555443
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.29 E-value=1.2e-06 Score=91.25 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=56.4
Q ss_pred ccCCC-CEEEEEeCCCcEEEEECCCCceeEEec---CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC
Q 008196 2 YNCKD-EHLASISLSGDLILHNLASGAKAAELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (574)
Q Consensus 2 FSpDG-~~LASGS~DGtVrIWDl~Tg~~l~t~~---gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~ 68 (574)
|.|+. +++++++.|..|++||+.+..|+..|. +|.+.| ..+.|+.+|+ .|++||.|..+++|++.
T Consensus 143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV-LSvD~~~~gd-~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 143 FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV-LSVDFSLDGD-RIASCGMDHSLKLWRLN 211 (385)
T ss_pred cCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE-EEEEEcCCCC-eeeccCCcceEEEEecC
Confidence 45554 699999999999999999999988886 577778 4559999996 59999999999999996
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=8.3e-06 Score=84.65 Aligned_cols=108 Identities=13% Similarity=0.225 Sum_probs=81.4
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCC----ceeEEecCCCCCeEEEEEE-ccCCCeEEEEEeCCCcEEEEeCC-----C-
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASG----AKAAELKDPNEQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTT-----G- 69 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg----~~l~t~~gh~~~Vvs~Laf-SPdGr~LLaSgS~DGtVrLWDl~-----~- 69 (574)
.|++.|+.+|+|+.|++|+|||.... .+....+.|.+.++++ .| +|.-.+++|+|+.|++|.||.-. .
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV-~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRV-VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEE-EecCccccceEEEEecCCceeeeeecccccccc
Confidence 48889999999999999999997543 4556777888888776 67 55434889999999999999861 1
Q ss_pred --CCceeEEeccCCCCeEEEEEcCC--CCEEEEEEecCCcCEEEec
Q 008196 70 --RSPKVSWLKQHSAPTAGISFSSD--DKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 70 --~~~ll~tl~gH~~~VtSVaFSPD--G~~LaS~sWD~sg~viv~e 111 (574)
...+..++......|+.|+|.|. |-.+++++ -++.+.+++
T Consensus 99 ~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~--aDG~lRIYE 142 (361)
T KOG2445|consen 99 GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS--ADGILRIYE 142 (361)
T ss_pred cceeEEEEEeecCCcceeEEEecchhcceEEEEec--cCcEEEEEe
Confidence 12334556777788999999985 55666665 446666666
No 144
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.28 E-value=7.2e-06 Score=86.60 Aligned_cols=96 Identities=20% Similarity=0.298 Sum_probs=76.1
Q ss_pred cCCCCEEEEEe--CCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCc-EEEEeCCCCCceeEEecc
Q 008196 3 NCKDEHLASIS--LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-LHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 3 SpDG~~LASGS--~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGt-VrLWDl~~~~~ll~tl~g 79 (574)
|.++.|||--+ ..|.|+|||+.+-+.+..+..|.+.+ .||+|+++| .+|||++..|+ ||||.+..+....+.-.|
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~l-Aalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG 215 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPL-AALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRG 215 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCce-eEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence 34455887643 57999999999999999999998888 899999999 78999999988 799999664444333333
Q ss_pred C-CCCeEEEEEcCCCCEEEEEE
Q 008196 80 H-SAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 80 H-~~~VtSVaFSPDG~~LaS~s 100 (574)
- ...|.+++|++|+.+|++.+
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEec
Confidence 2 33489999999999887766
No 145
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=6.5e-06 Score=82.51 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=85.9
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC---CceeEEecc
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR---SPKVSWLKQ 79 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~---~~ll~tl~g 79 (574)
.|.|++|++|-.|..+.+||++-+..+..|..|...+ +||.|+|.. +++++|+.|..|++-|+.+. +..+.....
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi-r~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI-RCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce-eEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 5889999999999999999999999999999888777 999999986 88999999999999999653 233445678
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCC
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
|++.+-.+.|+|..--+++.+-|+.
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred ccCceEEEEecCccceeeeccCcce
Confidence 9999999999999888888765543
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.28 E-value=3.5e-06 Score=89.18 Aligned_cols=92 Identities=17% Similarity=0.251 Sum_probs=74.5
Q ss_pred EEEEEeCCCcEEEEECCCCcee---EEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC-CceeEEeccCCCC
Q 008196 8 HLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLKQHSAP 83 (574)
Q Consensus 8 ~LASGS~DGtVrIWDl~Tg~~l---~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~-~~ll~tl~gH~~~ 83 (574)
.|++|.+-+.|++|...+|... ..|.+|+..| ..|+|+|.-+.++++|+.||+|+|||++.. .......++|...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SV-EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSV-EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccch-hhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 5889989999999999887653 3455777777 888999988889999999999999999654 1122234899999
Q ss_pred eEEEEEcCCCCEEEEEE
Q 008196 84 TAGISFSSDDKAVSSLC 100 (574)
Q Consensus 84 VtSVaFSPDG~~LaS~s 100 (574)
|+.|+|+.+-.+|+++.
T Consensus 305 VNVISWnr~~~lLasG~ 321 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGG 321 (440)
T ss_pred eeeEEccCCcceeeecC
Confidence 99999998877777765
No 147
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=2.7e-06 Score=93.47 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=83.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCC--------CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC----
Q 008196 2 YNCKDEHLASISLSGDLILHNLAS--------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG---- 69 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~T--------g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~---- 69 (574)
|.+-.-.|++|+.||.|++|++.. -+.+.+|.+|.+.| -|+++...+. .+++|+.||+|+.|++..
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPV-l~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPV-LCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCce-EEEEecCCce-EEEeeccCceeeeeccCCCCCc
Confidence 455566899999999999999932 24588999999998 7779999984 499999999999996521
Q ss_pred -----CCceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 70 -----RSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 70 -----~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
...+...+.||.+.||.++||.....|++++.|. .+..|+
T Consensus 380 ~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg--Tvr~w~ 424 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG--TVRLWE 424 (577)
T ss_pred ccccCcchhccceeccccceeeeeecccccceeeecCCc--eEEeec
Confidence 0123456899999999999999989999988664 444444
No 148
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.26 E-value=3.2e-06 Score=91.07 Aligned_cols=105 Identities=21% Similarity=0.340 Sum_probs=85.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCcee-EEe-----------------cCCCCCeEEEEEEccCCCeEEEEEeCCCcEE
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKA-AEL-----------------KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l-~t~-----------------~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVr 63 (574)
+++|++++++++.|++|.-|++.+|+.. +.+ ++|...+ .+++.++|| +||++|+.|..|.
T Consensus 150 ls~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~kei-l~~avS~Dg-kylatgg~d~~v~ 227 (479)
T KOG0299|consen 150 LSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEI-LTLAVSSDG-KYLATGGRDRHVQ 227 (479)
T ss_pred eeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccccee-EEEEEcCCC-cEEEecCCCceEE
Confidence 5789999999999999999999988743 111 1344445 677999999 5699999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEE
Q 008196 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFI 109 (574)
Q Consensus 64 LWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv 109 (574)
|||..+..+ +..+.+|.+.|.+++|-..-..+++++.|+..+++.
T Consensus 228 Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 228 IWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred EecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 999987544 446899999999999998888899999888766654
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.25 E-value=2.5e-06 Score=91.90 Aligned_cols=102 Identities=14% Similarity=0.199 Sum_probs=80.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCce-eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC--c-eeEEe
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--P-KVSWL 77 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~-l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~--~-ll~tl 77 (574)
|+.+..-++.|..=|...+||++++.. ...+.-|...| ..|+++|..+++|+|||.|++++|||++... . .+...
T Consensus 287 ~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI-~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 287 FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI-TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred ccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc-ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 455666677777777899999988765 66777777767 7779999999999999999999999994321 1 12355
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEecCC
Q 008196 78 KQHSAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 78 ~gH~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
..|...|.++.|||++..|++.|.|..
T Consensus 366 ~~HrrsV~sAyFSPs~gtl~TT~~D~~ 392 (498)
T KOG4328|consen 366 LPHRRSVNSAYFSPSGGTLLTTCQDNE 392 (498)
T ss_pred ccccceeeeeEEcCCCCceEeeccCCc
Confidence 789999999999999988998775543
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=2.2e-06 Score=89.16 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=54.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECC---CC-----ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLA---SG-----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~---Tg-----~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~ 68 (574)
.+|||++||+++--..|+||.+- .| ..+..+++|...| ..++|++++++ +++.+.||+++|||+.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV-~~~aFsn~S~r-~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV-LAAAFSNSSTR-AVTVSKDGKWRIWDTD 308 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe-eeeeeCCCcce-eEEEecCCcEEEeecc
Confidence 47999999999999999999973 22 2356788999888 55599999966 9999999999999983
No 151
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.8e-05 Score=80.76 Aligned_cols=229 Identities=18% Similarity=0.241 Sum_probs=139.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeC--CCcEEEEeCCCCCceeEEecc
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~--DGtVrLWDl~~~~~ll~tl~g 79 (574)
|+.+|.+|++++.|-+|+|||..+|+.++++..++..+ .+++|...... ++.++. |.+|++-++... .+++++.|
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~-~~~~Fth~~~~-~i~sStk~d~tIryLsl~dN-kylRYF~G 98 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGV-DLACFTHHSNT-VIHSSTKEDDTIRYLSLHDN-KYLRYFPG 98 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccc-cEEEEecCCce-EEEccCCCCCceEEEEeecC-ceEEEcCC
Confidence 78999999999999999999999999999998776666 66688666545 444454 899999999663 57889999
Q ss_pred CCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCcceeEecccCCCeEeccCCCCCCcccccccccccCCCCCCCCCC
Q 008196 80 HSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSG 159 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~dsVi~PDPlps~t~ss~sssts~~~~~SS~~~~ 159 (574)
|...|.+++.+|-+..+++++.|+. +.+|+.....-..++... ...+...|| ...-.+.+..+.
T Consensus 99 H~~~V~sL~~sP~~d~FlS~S~D~t--vrLWDlR~~~cqg~l~~~-~~pi~AfDp------~GLifA~~~~~~------- 162 (311)
T KOG1446|consen 99 HKKRVNSLSVSPKDDTFLSSSLDKT--VRLWDLRVKKCQGLLNLS-GRPIAAFDP------EGLIFALANGSE------- 162 (311)
T ss_pred CCceEEEEEecCCCCeEEecccCCe--EEeeEecCCCCceEEecC-CCcceeECC------CCcEEEEecCCC-------
Confidence 9999999999999999999886643 333432211111111111 111111222 222221111110
Q ss_pred CCCcccccccCCCCcCCCCcccCCCCCCccccccCCCCCCCCCccc----cccccccCCCCCCcccc----cCCCCCCCc
Q 008196 160 PSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDME----VFSPLVDVQPITPSLDK----LWDGHEGAK 231 (574)
Q Consensus 160 s~g~~sS~~~~st~e~tPsr~~~~~~G~ls~~~~p~~~~~~~~~~~----vfSPl~d~~~~~~s~~~----~w~~~~g~~ 231 (574)
..-+.+ .+....||-....... .+..+ =||| |.+.|.=|-.. +-|+-+|+.
T Consensus 163 ----~IkLyD----------~Rs~dkgPF~tf~i~~-----~~~~ew~~l~FS~--dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 163 ----LIKLYD----------LRSFDKGPFTTFSITD-----NDEAEWTDLEFSP--DGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ----eEEEEE----------ecccCCCCceeEccCC-----CCccceeeeEEcC--CCCEEEEEeCCCcEEEEEccCCcE
Confidence 000111 1234445555432211 11111 4899 88874333332 567778888
Q ss_pred CCCCCCcCCCC---ccc-cCCCCCCCCccCCCCCccccccccCC
Q 008196 232 KDHLPIDKKPS---SML-FPSSSRRFPYAEDGSNEHSVFDWKSS 271 (574)
Q Consensus 232 ~d~~~~~~~~~---~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~ 271 (574)
+.+|+...-.. .+- | ...-+|.+...+++..-||+.+++
T Consensus 222 ~~tfs~~~~~~~~~~~a~f-tPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATF-TPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred eeeEeeccCCCCcceeEEE-CCCCcEEEEecCCCcEEEEEcCCC
Confidence 87777765321 112 4 566677778888777788888544
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.21 E-value=2.1e-05 Score=77.11 Aligned_cols=96 Identities=28% Similarity=0.397 Sum_probs=77.8
Q ss_pred ccCCCCEEEEEeC-CCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeE-Eecc
Q 008196 2 YNCKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-WLKQ 79 (574)
Q Consensus 2 FSpDG~~LASGS~-DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~-tl~g 79 (574)
|++++++++.++. |+.+++|++..+..+..+.+|...+ .+++|+|+++.++++++.|+.|++||.... .... .+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~ 240 (466)
T COG2319 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV-SSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSG 240 (466)
T ss_pred ECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce-EEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCC
Confidence 7889999999886 9999999998888888888877777 788999998646777799999999998743 3444 5788
Q ss_pred CCCCeEEEEEcCCCCEEEEEE
Q 008196 80 HSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~s 100 (574)
|...+ ...|++++..+++++
T Consensus 241 ~~~~~-~~~~~~~~~~~~~~~ 260 (466)
T COG2319 241 HSDSV-VSSFSPDGSLLASGS 260 (466)
T ss_pred CCcce-eEeECCCCCEEEEec
Confidence 88775 448999997777554
No 153
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.20 E-value=1.6e-06 Score=97.21 Aligned_cols=103 Identities=21% Similarity=0.299 Sum_probs=88.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccC--CCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPd--Gr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
.+|||++||+|..-|.++||++..-+....+..|...| .||.|+.- +++||++++.|.-|+|||+.....+++++.+
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEi-lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~ 545 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEI-LCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG 545 (1080)
T ss_pred ECCCcceecccCccCceEEEEehhhhhhhheeccccee-EEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc
Confidence 47999999999999999999998888888888888887 88899752 4578999999999999999776778889999
Q ss_pred CCCCeEEEEEcCCC--CEEEEEEecCCc
Q 008196 80 HSAPTAGISFSSDD--KAVSSLCWQRAK 105 (574)
Q Consensus 80 H~~~VtSVaFSPDG--~~LaS~sWD~sg 105 (574)
|...|++|.|-..| ..+++++-|+..
T Consensus 546 HSssITsvKFa~~gln~~MiscGADksi 573 (1080)
T KOG1408|consen 546 HSSSITSVKFACNGLNRKMISCGADKSI 573 (1080)
T ss_pred cccceeEEEEeecCCceEEEeccCchhh
Confidence 99999999998776 667776655543
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.20 E-value=1e-05 Score=90.09 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=59.0
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEE--ecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t--~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~ 68 (574)
|-|...+|++++.|.+|++||+..+.++.. +.+|.+.+ ..++|.|+...++++|+.||.|.|||++
T Consensus 108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~Sv-kS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSV-KSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cCCCceeEEEccCCceeeeeeeccceeecceeeccccccc-chhhhccCCCcceeeccCCCcEEEEEEe
Confidence 667556899999999999999999888776 88999888 7779999988899999999999999984
No 155
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.19 E-value=1.2e-05 Score=90.16 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=73.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
++..|++++.||.|++|++ +|+++..+.+|++.+ ++++...++ .+++|++.|++++||+... +.+.+.-....|
T Consensus 189 ~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~v-Ysis~~~~~-~~Ivs~gEDrtlriW~~~e---~~q~I~lPttsi 262 (745)
T KOG0301|consen 189 DDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFV-YSISMALSD-GLIVSTGEDRTLRIWKKDE---CVQVITLPTTSI 262 (745)
T ss_pred cCCCeEeecCCceEEEEec-cCceeeeeeccceEE-EEEEecCCC-CeEEEecCCceEEEeecCc---eEEEEecCccce
Confidence 4557899999999999999 899999999999888 777865554 5699999999999999863 333344344479
Q ss_pred EEEEEcCCCCEEEEEEecCCcCE
Q 008196 85 AGISFSSDDKAVSSLCWQRAKPV 107 (574)
Q Consensus 85 tSVaFSPDG~~LaS~sWD~sg~v 107 (574)
|++++-++|.+++.++ |...++
T Consensus 263 Wsa~~L~NgDIvvg~S-DG~VrV 284 (745)
T KOG0301|consen 263 WSAKVLLNGDIVVGGS-DGRVRV 284 (745)
T ss_pred EEEEEeeCCCEEEecc-CceEEE
Confidence 9999988888655443 543333
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=2.4e-06 Score=99.73 Aligned_cols=104 Identities=19% Similarity=0.294 Sum_probs=75.5
Q ss_pred ccCCCC----EEEEEeCCCcEEEEECCC---C---ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC
Q 008196 2 YNCKDE----HLASISLSGDLILHNLAS---G---AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS 71 (574)
Q Consensus 2 FSpDG~----~LASGS~DGtVrIWDl~T---g---~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~ 71 (574)
|.+.|. +||.|+.||.|.+||... + ..+.++..|++.| ..|.|++....+|++|+.||.|.|||+....
T Consensus 72 W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V-~gLDfN~~q~nlLASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 72 WGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPV-LGLDFNPFQGNLLASGADDGEILIWDLNKPE 150 (1049)
T ss_pred ecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCce-eeeeccccCCceeeccCCCCcEEEeccCCcC
Confidence 455555 489999999999999865 2 2366777899999 7789999988899999999999999996532
Q ss_pred ceeEE-eccCCCCeEEEEEcCCCCEE-EE-------EEecCCcC
Q 008196 72 PKVSW-LKQHSAPTAGISFSSDDKAV-SS-------LCWQRAKP 106 (574)
Q Consensus 72 ~ll~t-l~gH~~~VtSVaFSPDG~~L-aS-------~sWD~sg~ 106 (574)
..... -....+.|.|++|+..-.+| ++ ..||.+++
T Consensus 151 tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 151 TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 22111 22345679999998654444 33 45665544
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=4.9e-06 Score=89.82 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=78.9
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC-----CceeE
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-----SPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~-----~~ll~ 75 (574)
.|+.|++.|..++.+|.|.+||+....+++.+.....-.-..++.++++ .|||+|+..|.|.|||..+. -..+.
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchh
Confidence 3788999999999999999999999999999986544444566788998 57999999999999997431 12233
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.+..-...|+++.|++|+++|+-++
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhh
Confidence 4444556799999999999998876
No 158
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.12 E-value=9.9e-07 Score=100.26 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=79.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|...|.+|++|+.|..|+||...++.|+..+.||.+.+ +.++.+... .++++++.|..|++|.+... ..+..+.+|.
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~di-tdlavs~~n-~~iaaaS~D~vIrvWrl~~~-~pvsvLrght 274 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDI-TDLAVSSNN-TMIAAASNDKVIRVWRLPDG-APVSVLRGHT 274 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhccCCCCcccc-chhccchhh-hhhhhcccCceEEEEecCCC-chHHHHhccc
Confidence 77789999999999999999999999999999999998 777888775 77999999999999999773 4566799999
Q ss_pred CCeEEEEEcCC
Q 008196 82 APTAGISFSSD 92 (574)
Q Consensus 82 ~~VtSVaFSPD 92 (574)
+.|++|+|+|-
T Consensus 275 gavtaiafsP~ 285 (1113)
T KOG0644|consen 275 GAVTAIAFSPR 285 (1113)
T ss_pred cceeeeccCcc
Confidence 99999999974
No 159
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.12 E-value=9.6e-06 Score=90.98 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=76.6
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCce----eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC---Cce
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAK----AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR---SPK 73 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~----l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~---~~l 73 (574)
.|||||+||++.|+|.++.||....... ....+.|...| ..+.|+|++ ++++|++.|++|++|..... ...
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRII-WdcsW~pde-~~FaTaSRDK~VkVW~~~~~~d~~i~ 656 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRII-WDCSWSPDE-KYFATASRDKKVKVWEEPDLRDKYIS 656 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEE-EEcccCccc-ceeEEecCCceEEEEeccCchhhhhh
Confidence 4999999999999999999999854322 23355666555 555999998 55999999999999998432 222
Q ss_pred eEEeccCCCCeEEEEEcCC----CCEEEEEEecCCcCEEEec
Q 008196 74 VSWLKQHSAPTAGISFSSD----DKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 74 l~tl~gH~~~VtSVaFSPD----G~~LaS~sWD~sg~viv~e 111 (574)
......+...|+.++|.+- ...+++.+. ..|+++++.
T Consensus 657 ~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl-e~GeI~l~~ 697 (764)
T KOG1063|consen 657 RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL-EKGEIVLWR 697 (764)
T ss_pred hhchhccCCceeeEEeeccccccccceEEEEe-cccEEEEEe
Confidence 1245568889999999753 222444442 446666665
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.11 E-value=1.6e-05 Score=83.10 Aligned_cols=97 Identities=12% Similarity=0.233 Sum_probs=77.2
Q ss_pred ccCCCCEEEEEeCCCcEEEEEC-CCCceeE--EecCC----CCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee
Q 008196 2 YNCKDEHLASISLSGDLILHNL-ASGAKAA--ELKDP----NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl-~Tg~~l~--t~~gh----~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll 74 (574)
|+|||.+|+.| ....|+|+|+ +.|.... ....+ ...++.|++|+|-....++.|+....+-||.-.+..+ +
T Consensus 166 Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-l 243 (406)
T KOG2919|consen 166 FSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-L 243 (406)
T ss_pred ecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-e
Confidence 89999999988 6678999999 5554322 11112 2457799999998767899999999999998866544 4
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 75 SWLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
..+.+|.+.|+.++|.+||..|+++.
T Consensus 244 ~llggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 244 QLLGGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred eeecccCCCeeeEEeccCcCeecccc
Confidence 57889999999999999999999965
No 161
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=5.5e-05 Score=82.17 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=69.5
Q ss_pred CccCCCCEEEEEeCC---CcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEe
Q 008196 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (574)
Q Consensus 1 ~FSpDG~~LASGS~D---GtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl 77 (574)
.|+|||++|+..+.+ ..|.+||+.+++... +....+.. ...+|+|||++++++.+.|+...||.+.........+
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~-~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSN-SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL 279 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCc-cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence 489999999887643 459999998887643 33233333 4559999998877788889988888763211123345
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEE
Q 008196 78 KQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 78 ~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
..|...+.+.+|+|||+.|+..+
T Consensus 280 t~~~~~~~~~~wSpDG~~l~f~s 302 (427)
T PRK02889 280 TQSSGIDTEPFFSPDGRSIYFTS 302 (427)
T ss_pred CCCCCCCcCeEEcCCCCEEEEEe
Confidence 55665667889999999988765
No 162
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.10 E-value=9.8e-07 Score=89.37 Aligned_cols=93 Identities=16% Similarity=0.267 Sum_probs=78.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
|...-|+++.|-+.+|||.-+|..+..|. |+..| ..|+|+.|. +.|++|+.++.++|||+.........+.+|...|
T Consensus 70 na~~aasaaadftakvw~a~tgdelhsf~-hkhiv-k~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 70 NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIV-KAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhhee-eeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 44467889999999999999999999988 55445 777999998 5599999999999999976655666789999999
Q ss_pred EEEEEcCCCCEEEEEE
Q 008196 85 AGISFSSDDKAVSSLC 100 (574)
Q Consensus 85 tSVaFSPDG~~LaS~s 100 (574)
..+-|.-..+.|++..
T Consensus 147 r~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSA 162 (334)
T ss_pred eeEEEeccCceEEeec
Confidence 9999988888888843
No 163
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=3.3e-05 Score=81.76 Aligned_cols=96 Identities=18% Similarity=0.288 Sum_probs=76.2
Q ss_pred ccCCCCEEEEEe-CCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~~LASGS-~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|++||..+++++ .|..|+|||..++.++.-....-+.+ .-+.|+||| .+|+.+..|+..++|+.........+..+.
T Consensus 203 wn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~-slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgs 280 (445)
T KOG2139|consen 203 WNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGF-SLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGS 280 (445)
T ss_pred EcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCce-eeEEEcCCC-CEEEEecccceeeeehhcccceecceeccC
Confidence 789999999998 58889999999998866553334455 677999999 458888899999999875544455555554
Q ss_pred CCCeEEEEEcCCCCEEEEEE
Q 008196 81 SAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~s 100 (574)
. .|...+|+|+|+.|+-.+
T Consensus 281 g-rvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 281 G-RVQTACWSPCGSFLLFAC 299 (445)
T ss_pred C-ceeeeeecCCCCEEEEEE
Confidence 4 899999999999888765
No 164
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=6.2e-05 Score=81.72 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=71.1
Q ss_pred CccCCCCEEEEEeC---CCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCc--EEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LASGS~---DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGt--VrLWDl~~~~~ll~ 75 (574)
.|+|||+.|+..+. +..|.+||+.++... .+..+.+.+ ...+|+|||++++++.+.++. |.+||+.+.. ..
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~-~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 283 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMT-FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TT 283 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcc-cCcEECCCCCEEEEEEecCCCceEEEEECCCCc--eE
Confidence 38999999888763 578999999888653 444444444 455999999887788887776 6666776643 33
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.+..|.....+.+|+|||+.|+..+
T Consensus 284 ~Lt~~~~~~~~~~~spDG~~i~f~s 308 (435)
T PRK05137 284 RLTDSPAIDTSPSYSPDGSQIVFES 308 (435)
T ss_pred EccCCCCccCceeEcCCCCEEEEEE
Confidence 4666666678899999999998765
No 165
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.08 E-value=3.4e-06 Score=86.03 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=58.9
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT 67 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl 67 (574)
-+|++.+|++++|+.|+||+-++...+..++.|.+.+ .+|+|+|+. .++|.++.|+.|.+|++
T Consensus 260 RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv-n~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 260 RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV-NAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce-eEEEeCCCC-chhhhccCCceEEeeec
Confidence 4799999999999999999999999999999999777 888999996 67999999999999986
No 166
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.08 E-value=8e-05 Score=72.90 Aligned_cols=107 Identities=15% Similarity=0.210 Sum_probs=69.1
Q ss_pred ccCCCCEEEEEeC----------CCcEEEEECC-CCceeEEecCCC-CCeEEEEEEccCCCeEEEE-EeCCCcEEEEeCC
Q 008196 2 YNCKDEHLASISL----------SGDLILHNLA-SGAKAAELKDPN-EQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTT 68 (574)
Q Consensus 2 FSpDG~~LASGS~----------DGtVrIWDl~-Tg~~l~t~~gh~-~~Vvs~LafSPdGr~LLaS-gS~DGtVrLWDl~ 68 (574)
|+++|++|+.-.. -+...||.++ .+..+..+.-.. +.| ..++|+|+|+.+++. |..++.|.|||+.
T Consensus 13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I-~~~~WsP~g~~favi~g~~~~~v~lyd~~ 91 (194)
T PF08662_consen 13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPI-HDVAWSPNGNEFAVIYGSMPAKVTLYDVK 91 (194)
T ss_pred ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCce-EEEEECcCCCEEEEEEccCCcccEEEcCc
Confidence 8899987765433 2234455542 223344444333 345 788999999886555 4467899999997
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecC-CcCEEEeccC
Q 008196 69 GRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQR-AKPVFIDETT 113 (574)
Q Consensus 69 ~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~-sg~viv~e~~ 113 (574)
.. .+..+ +...+..|.|+|+|++|+.++.+. .+.+.+++..
T Consensus 92 ~~--~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 92 GK--KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred cc--EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 42 33334 345678999999999999987653 3555555533
No 167
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=1.6e-05 Score=89.09 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=78.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEec-----CC--CCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK-----DP--NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~-----gh--~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll 74 (574)
|+++|..|+.||.||.|++||..++..+.... .. ...++..|.|-.++ . |++|..-|+|++||.... .++
T Consensus 162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-t-I~sgDS~G~V~FWd~~~g-TLi 238 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-T-IASGDSAGTVTFWDSIFG-TLI 238 (691)
T ss_pred ecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-c-EEEecCCceEEEEcccCc-chh
Confidence 88999999999999999999999998776222 11 23455666777776 4 999999999999999663 455
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEEecC
Q 008196 75 SWLKQHSAPTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
+....|..-|.|++-.+++.++++++-|.
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 66788999999999999988888876553
No 168
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=9.2e-06 Score=86.75 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=70.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEe--cc
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL--KQ 79 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl--~g 79 (574)
|+.+|..|++|+.||++|||+..+...+..+..|+..| .+|.|+||| ++|++-+.| ..+|||+..... +.+. ..
T Consensus 152 f~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV-~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~-~a~~t~~~ 227 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEV-KDLDFSPDG-KFLASIGAD-SARVWSVNTGAA-LARKTPFS 227 (398)
T ss_pred EcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCcc-ccceeCCCC-cEEEEecCC-ceEEEEeccCch-hhhcCCcc
Confidence 78899999999999999999987777777888888888 999999999 679999999 999999966422 2222 33
Q ss_pred CCCCeEEEEEcCCC
Q 008196 80 HSAPTAGISFSSDD 93 (574)
Q Consensus 80 H~~~VtSVaFSPDG 93 (574)
.......+.|+.|+
T Consensus 228 k~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDN 241 (398)
T ss_pred cchhhhhceecccC
Confidence 34446677787665
No 169
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.06 E-value=1e-05 Score=88.90 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=81.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEEccC-CCeEEEEEeCCCcEEEEeCCC---------C
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTG---------R 70 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~-gh~~~Vvs~LafSPd-Gr~LLaSgS~DGtVrLWDl~~---------~ 70 (574)
|+.||.+|++|+.|-.|+|||....+.+..+. +|...| .++.|-|. +..++++|..|..|+|||+.. .
T Consensus 58 Wn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNI-FsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~ 136 (758)
T KOG1310|consen 58 WNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANI-FSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM 136 (758)
T ss_pred ecCCCCEEeecCCcceEEeecchhcceeeeeecccccce-eEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence 89999999999999999999998888888877 555566 67799884 357899999999999999953 1
Q ss_pred CceeEEeccCCCCeEEEEEcCCC-CEEEEEEecCCcC
Q 008196 71 SPKVSWLKQHSAPTAGISFSSDD-KAVSSLCWQRAKP 106 (574)
Q Consensus 71 ~~ll~tl~gH~~~VtSVaFSPDG-~~LaS~sWD~sg~ 106 (574)
.....-+..|...|..|+-.|++ ..+.+++-|....
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtir 173 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIR 173 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCccee
Confidence 12223356788888888888888 6777777665433
No 170
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.05 E-value=4.3e-06 Score=88.17 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=77.0
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASG-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg-~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|||++--+.+|+.|..+..+|...- ..+....+|...+ ..|+|+|.|.. +++||.|.+|+||.+....-.-......
T Consensus 237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV-~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRdiYhtkR 314 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV-MDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRDIYHTKR 314 (433)
T ss_pred cCccccceeeccccccceehhhhhhcccchhhcccceeE-EEeccCCCcch-hccccccceEEEeecCCCcchhhhhHhh
Confidence 8998878899999999999999754 3467778888888 66699999966 9999999999999995432111011112
Q ss_pred CCCeEEEEEcCCCCEEEEEEec
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD 102 (574)
-+.|.||.||-|.++|++++.|
T Consensus 315 Mq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 315 MQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred hheeeEEEEeccccEEEecCCC
Confidence 2359999999999999999844
No 171
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=7.6e-06 Score=85.21 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=52.0
Q ss_pred EEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 40 vs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
..|+.|++.| .+||.|+.||.|.|||+.+.. ....+.+|..+|+|+|||+||+.|++++
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS 84 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSS 84 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeec
Confidence 4777999999 679999999999999998754 3457899999999999999999999954
No 172
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.03 E-value=2.6e-05 Score=85.73 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=66.9
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEeccCCCcceeE
Q 008196 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETAL 120 (574)
Q Consensus 41 s~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aL 120 (574)
...+|+||| ++||+.+.||.+||||+... .++..++..-+...||||||||++|++++-| ..+-||. -....++.
T Consensus 294 n~f~FS~DG-~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED--DLVtVwS-f~erRVVA 368 (636)
T KOG2394|consen 294 NEFAFSPDG-KYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDGKYIVTGGED--DLVTVWS-FEERRVVA 368 (636)
T ss_pred cceeEcCCC-ceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCccEEEecCCc--ceEEEEE-eccceEEE
Confidence 445899999 55999999999999999874 3344556667789999999999999998744 3444443 12334455
Q ss_pred ecccCCC--eEeccCCCCCC
Q 008196 121 LGGAVGD--SILMPDPLPSV 138 (574)
Q Consensus 121 lg~~~~d--sVi~PDPlps~ 138 (574)
.|.++.. .++..||.-..
T Consensus 369 RGqGHkSWVs~VaFDpytt~ 388 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTS 388 (636)
T ss_pred eccccccceeeEeecccccc
Confidence 5666655 66778887544
No 173
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=4.2e-05 Score=81.81 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=81.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEec-----------------------------------------CCC----
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK-----------------------------------------DPN---- 36 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~-----------------------------------------gh~---- 36 (574)
|++||++|++.+.| ..+||+..+|.++.... .+.
T Consensus 194 FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 194 FSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred eCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc
Confidence 89999999999999 99999998872211110 000
Q ss_pred --------CCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcC
Q 008196 37 --------EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 37 --------~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
...+.+++.+.|| +|++-|+.||.|.|++....+......+.|...|+.+.|+||.+++++.+.+....
T Consensus 273 ~~~~~~~~~~siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 273 RLRKKIKRFKSISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred chhhhhhccCcceeEEEcCCC-cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 2244888999999 77999999999999999776666666789999999999999999999976555444
No 174
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.00 E-value=1.6e-05 Score=56.86 Aligned_cols=39 Identities=21% Similarity=0.589 Sum_probs=34.7
Q ss_pred CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEe
Q 008196 26 GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (574)
Q Consensus 26 g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWD 66 (574)
|+++.++.+|.+.+ .+|+|+|++ .+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i-~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSI-NSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSE-EEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcE-EEEEEeccc-ccceeeCCCCEEEEEC
Confidence 35788999998888 888999997 6699999999999998
No 175
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00015 Score=78.92 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=66.9
Q ss_pred CccCCCCEEEEEe---CCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCC--cEEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLASIS---LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LASGS---~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DG--tVrLWDl~~~~~ll~ 75 (574)
.|+|||+.||..+ .+..|.+||+.+|+... +....+.. ..++|+|||++++++.+.++ .|.+||+.+... .
T Consensus 205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~-~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~--~ 280 (429)
T PRK03629 205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHN-GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--R 280 (429)
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCc-CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE--E
Confidence 4899999988754 34679999998876432 22222222 23489999988777666666 488889976432 3
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.+..+...+...+|+|||+.|+..+
T Consensus 281 ~lt~~~~~~~~~~wSPDG~~I~f~s 305 (429)
T PRK03629 281 QVTDGRSNNTEPTWFPDSQNLAYTS 305 (429)
T ss_pred EccCCCCCcCceEECCCCCEEEEEe
Confidence 4445555678899999999988766
No 176
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.97 E-value=6.7e-05 Score=77.79 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=74.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCC--CeEEEEEeCCCcEEEEeCCCCCceeEEeccCCC
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS--RHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdG--r~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~ 82 (574)
|..++.+++-|.+++|||..+-+....|+ ..+.|++. +++|-. ..|||+|-.|-.|++.|+... .....+.||.+
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYsh-amSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~ 189 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSH-AMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRD 189 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEee-cCceeehh-hcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccC
Confidence 45578899999999999999988888887 44567555 888843 368889999999999999764 34568999999
Q ss_pred CeEEEEEcCCCCEEEE
Q 008196 83 PTAGISFSSDDKAVSS 98 (574)
Q Consensus 83 ~VtSVaFSPDG~~LaS 98 (574)
.|.+|.|+|...+++.
T Consensus 190 ~vlaV~Wsp~~e~vLa 205 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLA 205 (397)
T ss_pred ceEEEEeccCceeEEE
Confidence 9999999999887665
No 177
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.00021 Score=77.70 Aligned_cols=96 Identities=19% Similarity=0.299 Sum_probs=69.9
Q ss_pred CccCCCCEEEEEeC---CCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCC--cEEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LASGS~---DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DG--tVrLWDl~~~~~ll~ 75 (574)
.|+|||++|+..+. +..|.+||+.+++.. .+....+.. .+++|+|||++++++.+.++ .|++||+.+.. ..
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~-~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--~~ 285 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGIN-GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--LT 285 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCc-cCceECCCCCEEEEEEeCCCCceEEEEECCCCC--eE
Confidence 48999999998773 446999999887653 333333333 45699999988777777766 48889987643 23
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.+..|......++|+|||+.|+..+
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~s 310 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTS 310 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEE
Confidence 4556655567889999999988775
No 178
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.97 E-value=4.6e-05 Score=87.12 Aligned_cols=104 Identities=16% Similarity=0.254 Sum_probs=88.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEE
Q 008196 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG 86 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtS 86 (574)
..+|.|..+|+|+|+|++.++.+..|+...+.| ..|+|..||..++++|+..|.+-+||+..+.........|.+.|..
T Consensus 215 DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~V-tslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~ 293 (910)
T KOG1539|consen 215 DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRV-TSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTG 293 (910)
T ss_pred eEEEEeccCceEEEEEcccCcEEEEEEccccce-eEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccc
Confidence 468999999999999999999999999656778 6669999999999999999999999998865555556789889999
Q ss_pred EEEcCCCCEEEEEEecCCcCEEEec
Q 008196 87 ISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 87 VaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
..|.+....+++++-|..-++++-+
T Consensus 294 ~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 294 ATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred ceecCCCceEeeccCCCceeEEEee
Confidence 9999998899887766555555544
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.95 E-value=2e-05 Score=80.58 Aligned_cols=60 Identities=23% Similarity=0.320 Sum_probs=50.2
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 41 s~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
..+.+-||+ +++||+|.|+.|+||..++..+ +..++.|.+.|.+++|+||...++.++-|
T Consensus 255 ~gvrIRpD~-KIlATAGWD~RiRVyswrtl~p-LAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 255 SGVRIRPDG-KILATAGWDHRIRVYSWRTLNP-LAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cceEEccCC-cEEeecccCCcEEEEEeccCCc-hhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 344666887 7799999999999999977544 44789999999999999999999988744
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.95 E-value=0.00011 Score=72.00 Aligned_cols=99 Identities=27% Similarity=0.437 Sum_probs=75.6
Q ss_pred cCCCC-EEEEEeC-CCcEEEEECCC-CceeEEecCCCCCeEEEEEEccCCCeEEEEEeC-CCcEEEEeCCCCCceeEEec
Q 008196 3 NCKDE-HLASISL-SGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 3 SpDG~-~LASGS~-DGtVrIWDl~T-g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~-DGtVrLWDl~~~~~ll~tl~ 78 (574)
++++. +++..+. |+.+++||... ...+..+..|...+ ..++|+|+++ +++.++. |+.+++|++.. ...+..+.
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 195 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESV-TSLAFSPDGK-LLASGSSLDGTIKLWDLRT-GKPLSTLA 195 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccE-EEEEECCCCC-EEEecCCCCCceEEEEcCC-CceEEeec
Confidence 45566 5555444 99999999987 67788888888777 7889999985 5777775 99999999976 33455677
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEEecCC
Q 008196 79 QHSAPTAGISFSSDDK-AVSSLCWQRA 104 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~-~LaS~sWD~s 104 (574)
+|...|.+++|+|++. .+++++.|..
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCc
Confidence 8999999999999998 4444354433
No 181
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=8.9e-05 Score=80.51 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=65.0
Q ss_pred CccCCCCEEEEEe-CCCcEEEE--ECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEe
Q 008196 1 MYNCKDEHLASIS-LSGDLILH--NLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (574)
Q Consensus 1 ~FSpDG~~LASGS-~DGtVrIW--Dl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl 77 (574)
.|+|||++|+.++ .+|.+.|| |+.++. +..+..+...+ ...+|+|||+.+++++..++.+.||++.........+
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~-~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNN-TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCc-CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 3899999888765 68876555 665554 45555555444 5669999998777777778999999874322122223
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEE
Q 008196 78 KQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 78 ~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.+.. .+++|+|||+.|+..+
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMIN 351 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEc
Confidence 4443 4678999999998765
No 182
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.92 E-value=1.6e-05 Score=83.04 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=77.5
Q ss_pred ccCCCCEEEEEeC-CCcEEEEECCC-CceeEEecCCCC---CeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEE
Q 008196 2 YNCKDEHLASISL-SGDLILHNLAS-GAKAAELKDPNE---QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW 76 (574)
Q Consensus 2 FSpDG~~LASGS~-DGtVrIWDl~T-g~~l~t~~gh~~---~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~t 76 (574)
|.++|+.|++|.+ |-.|..||++. +..+..+..|.+ +.|.. ...|++ .+|++|+.||.|++||++.....+..
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~F-Dld~~~-~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILF-DLDPKG-EILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEE-ecCCCC-ceeeccCCCccEEEEecCCCCCcccc
Confidence 7899999999985 88899999975 345677776654 33233 557888 66999999999999999764334456
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
+..|.+.|+.|+++|--.++++++.+
T Consensus 336 ~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccccccccceecCcccceeeeccCc
Confidence 78899999999999998888887643
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=0.0001 Score=77.49 Aligned_cols=92 Identities=20% Similarity=0.313 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccC-CCeEEEEEeCCCcEEEEeCCCCCc-eeEEeccCC-CC
Q 008196 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSP-KVSWLKQHS-AP 83 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPd-Gr~LLaSgS~DGtVrLWDl~~~~~-ll~tl~gH~-~~ 83 (574)
..+|++..+|.|+|||..+|+.+..|+++...+ ..++|.-+ +.+.+.+|+.||+|++||++.... ......+|. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~-N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATT-NGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcc-cceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 468999999999999999999999999887766 56688664 567899999999999999965332 222344554 45
Q ss_pred eEEEEEcCCCCEEEEE
Q 008196 84 TAGISFSSDDKAVSSL 99 (574)
Q Consensus 84 VtSVaFSPDG~~LaS~ 99 (574)
..|++.+..++.++++
T Consensus 120 f~~ld~nck~~ii~~G 135 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACG 135 (376)
T ss_pred ceEeeccCcCCeEEec
Confidence 6667666666777663
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=9.7e-05 Score=82.16 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=72.4
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC-CC-----------
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT-GR----------- 70 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~-~~----------- 70 (574)
.+.|++||+|+.||+|+||.+.+|.|++++. .+.++.||+|+|.+..-++....+..+.|-+.. +.
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell 486 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELL 486 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhh
Confidence 4679999999999999999999999999887 334669999999874323333333334444431 10
Q ss_pred ------------------------CceeEEeccCCCCeEEEEEcCCCCEEEEEEecCC-cCEEEec
Q 008196 71 ------------------------SPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRA-KPVFIDE 111 (574)
Q Consensus 71 ------------------------~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~s-g~viv~e 111 (574)
..-+.....|...|..|.|+..|.+|++.+-+.. ..++++.
T Consensus 487 ~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 487 ASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred hcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 0001123346778999999999999999775543 3345543
No 185
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=8.2e-05 Score=80.61 Aligned_cols=104 Identities=15% Similarity=0.236 Sum_probs=79.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~ 82 (574)
++++++||..+..|.|.|.-..+++.+..|+- . .++..++|+.||+. |+.+|.+|.|.+||+....+...+...-.-
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT~eli~s~Ki-e-G~v~~~~fsSdsk~-l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-E-GVVSDFTFSSDSKE-LLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhhhhhhheeee-c-cEEeeEEEecCCcE-EEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 78999999999999999999999999999883 3 44488899999966 555566789999999776444434333232
Q ss_pred CeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 83 PTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 83 ~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.-+++|.++++.+|++++ ..|.+-+++
T Consensus 389 ~gts~~~S~ng~ylA~GS--~~GiVNIYd 415 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGS--DSGIVNIYD 415 (514)
T ss_pred ceeeeeecCCCceEEecc--CcceEEEec
Confidence 357788889999999987 445554444
No 186
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=2.3e-05 Score=91.79 Aligned_cols=103 Identities=22% Similarity=0.283 Sum_probs=77.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEecCCCC-CeEEEEEEccCCCeEEEEEeCCC---cEEEEeCCCCCceeEEeccCCC
Q 008196 7 EHLASISLSGDLILHNLASGAKAAELKDPNE-QVLRVLDYSRNSRHLLVTAGDDG---TLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~-~Vvs~LafSPdGr~LLaSgS~DG---tVrLWDl~~~~~ll~tl~gH~~ 82 (574)
+.||+++.+|.+.|||++..+.+-.+..+.+ .-+.+|+|+|++-.-|++++.|. .|.+||++.....++.+.+|..
T Consensus 175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~ 254 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR 254 (1049)
T ss_pred HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc
Confidence 4789999999999999988877777776655 33588999998755566665543 4999999654455667899999
Q ss_pred CeEEEEEcCCC-CEEEEEEecCCcCEEEec
Q 008196 83 PTAGISFSSDD-KAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 83 ~VtSVaFSPDG-~~LaS~sWD~sg~viv~e 111 (574)
.|.+|.|++.+ ++|++++ +++.+++|.
T Consensus 255 GilslsWc~~D~~lllSsg--kD~~ii~wN 282 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSG--KDNRIICWN 282 (1049)
T ss_pred ceeeeccCCCCchhhhccc--CCCCeeEec
Confidence 99999999876 6777754 344544444
No 187
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.85 E-value=0.00013 Score=79.77 Aligned_cols=90 Identities=17% Similarity=0.252 Sum_probs=59.5
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce-eEEeccCCCCeEE
Q 008196 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHSAPTAG 86 (574)
Q Consensus 8 ~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l-l~tl~gH~~~VtS 86 (574)
.+|.|...|.-.|.|.++...+ ++... +..+.+|+|+|+| .+||.|+.|+.|+||.+.....+ ...-+.|..+|+.
T Consensus 420 ~va~Gt~~G~w~V~d~e~~~lv-~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ith 496 (626)
T KOG2106|consen 420 VVAVGTATGRWFVLDTETQDLV-TIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITH 496 (626)
T ss_pred eEEEeeccceEEEEecccceeE-EEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEE
Confidence 4444444444444444332222 22223 3444999999999 67999999999999999543333 3333445588999
Q ss_pred EEEcCCCCEEEEEE
Q 008196 87 ISFSSDDKAVSSLC 100 (574)
Q Consensus 87 VaFSPDG~~LaS~s 100 (574)
+.|++|+++|.+-+
T Consensus 497 LDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 497 LDWSSDSQFLVSNS 510 (626)
T ss_pred eeecCCCceEEecc
Confidence 99999999999955
No 188
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.85 E-value=4e-05 Score=85.59 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=80.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCce------eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCc-eeEEec
Q 008196 6 DEHLASISLSGDLILHNLASGAK------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLK 78 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~------l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~-ll~tl~ 78 (574)
.++||.+..||.|.++|...... +..+..|.+.| ..+.|.| |+..|++++.|.++++||+.+..+ -...+.
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAi-fDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAI-FDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhccccccccee-EeeccCC-CceeEEEccCCceeeeeeeccceeecceeec
Confidence 45899999999999999965322 24445677777 6669999 668899999999999999965322 233488
Q ss_pred cCCCCeEEEEEcCCCCEEE-EEEecCCcCEEEeccCCCc
Q 008196 79 QHSAPTAGISFSSDDKAVS-SLCWQRAKPVFIDETTCKA 116 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~La-S~sWD~sg~viv~e~~~s~ 116 (574)
+|...|.++||.|++..++ +++ +++.+.+|+..+..
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGg--RDg~illWD~R~n~ 178 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGG--RDGEILLWDCRCNG 178 (720)
T ss_pred ccccccchhhhccCCCcceeecc--CCCcEEEEEEeccc
Confidence 9999999999999876554 444 66777777655543
No 189
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.00015 Score=75.28 Aligned_cols=89 Identities=16% Similarity=0.312 Sum_probs=65.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
|...+++|+.||.|+++|+.++.. ..+..|...+ +||.+++.. ..+++||+|++|++||..... ....+.. ...|
T Consensus 64 d~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i-~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~-~~~~~d~-~kkV 138 (323)
T KOG1036|consen 64 DESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGI-RCIEYSYEV-GCVISGSWDKTIKFWDPRNKV-VVGTFDQ-GKKV 138 (323)
T ss_pred CCceEEEeccCceEEEEEecCCcc-eeeccCCCce-EEEEeeccC-CeEEEcccCccEEEEeccccc-ccccccc-CceE
Confidence 356899999999999999987765 3555566566 999999864 459999999999999997632 2223332 2378
Q ss_pred EEEEEcCCCCEEEEEE
Q 008196 85 AGISFSSDDKAVSSLC 100 (574)
Q Consensus 85 tSVaFSPDG~~LaS~s 100 (574)
.|+.. .|..|+.++
T Consensus 139 y~~~v--~g~~LvVg~ 152 (323)
T KOG1036|consen 139 YCMDV--SGNRLVVGT 152 (323)
T ss_pred EEEec--cCCEEEEee
Confidence 88876 466777765
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=0.0003 Score=71.53 Aligned_cols=66 Identities=18% Similarity=0.351 Sum_probs=54.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEE-ccCCCeEEEEEeCCCcEEEEeCCCCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTTGRS 71 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~Laf-SPdGr~LLaSgS~DGtVrLWDl~~~~ 71 (574)
.|..+-|+.++.|+.++-||+++|+....+++|.+.+ .+|.- +..+ + +++|+.||+|+|||+++..
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYv-H~vv~R~~~~-q-ilsG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYV-HSVVGRNANG-Q-ILSGAEDGTVRVWDTKTQK 189 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCccee-eeeeecccCc-c-eeecCCCccEEEEeccccc
Confidence 3455666666699999999999999999999999888 67665 4444 5 8999999999999997743
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=0.00011 Score=84.24 Aligned_cols=99 Identities=19% Similarity=0.293 Sum_probs=80.0
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCC--C--ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEe
Q 008196 2 YNCKDEHLASISLSGDLILHNLAS--G--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~T--g--~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl 77 (574)
|+|+++++|+|..||+|.||.-.. + .....+.-|+..| .+++|+++| .+|++||..|.+-+|.+.+... +.+
T Consensus 213 ~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V-~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k--qfL 288 (792)
T KOG1963|consen 213 LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV-NSLSFSSDG-AYLLSGGREGVLVLWQLETGKK--QFL 288 (792)
T ss_pred eccccceEEEeccCCcEEEEeccccccccccceEEEeccccc-ceeEEecCC-ceEeecccceEEEEEeecCCCc--ccc
Confidence 689999999999999999997633 1 2245666777777 899999999 5599999999999999976542 245
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEEecCC
Q 008196 78 KQHSAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 78 ~gH~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
.--.++|..+.++||+...+..+-|..
T Consensus 289 PRLgs~I~~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 289 PRLGSPILHIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred cccCCeeEEEEEcCCCCeEEEEecCce
Confidence 666778999999999998888775543
No 192
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.78 E-value=0.00048 Score=75.10 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=64.6
Q ss_pred CccCCCCEEEEE-eCCC--cEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEE--eCCCCCceeE
Q 008196 1 MYNCKDEHLASI-SLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LASG-S~DG--tVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLW--Dl~~~~~ll~ 75 (574)
.|+|||++|+.. +.+| .|.+||+.+++.. .+..+...+ ...+|+|||+.++++...++...|| |+.+... .
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~-~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~ 324 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNN-TEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--Q 324 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCc-CceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--E
Confidence 389999988765 4444 5889999887654 344333344 4559999997766666556666666 5554322 2
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
.+..+...+.+++|+|||++|+....+
T Consensus 325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 325 RITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred EeecCCCCccCEEECCCCCEEEEEEcc
Confidence 333344446678999999999876533
No 193
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0002 Score=79.38 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=75.9
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~ 82 (574)
+.+-.+|.+++.|+.|.+|+...+..++.++..+..+ ..++++||| .++++|+ +.|++||+... ..+.++.+|..
T Consensus 111 ~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~-~sl~is~D~-~~l~~as--~~ik~~~~~~k-evv~~ftgh~s 185 (541)
T KOG4547|consen 111 AQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV-SSLCISPDG-KILLTAS--RQIKVLDIETK-EVVITFTGHGS 185 (541)
T ss_pred ccccCceEecCCceeEEEEecccceeeeeeccCCCcc-ceEEEcCCC-CEEEecc--ceEEEEEccCc-eEEEEecCCCc
Confidence 4455689999999999999999999888888776666 677999998 5577775 68999999884 46678999999
Q ss_pred CeEEEEEcCC-----CCEEEE
Q 008196 83 PTAGISFSSD-----DKAVSS 98 (574)
Q Consensus 83 ~VtSVaFSPD-----G~~LaS 98 (574)
+|+++.|--+ |.++++
T Consensus 186 ~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 186 PVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred ceEEEEEEEeccccccceeee
Confidence 9999999766 667766
No 194
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.77 E-value=0.00051 Score=73.06 Aligned_cols=97 Identities=19% Similarity=0.298 Sum_probs=68.6
Q ss_pred CccCCCCEEEEEeCC---CcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCC--cEEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LASGS~D---GtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DG--tVrLWDl~~~~~ll~ 75 (574)
.|+|||++||.++.+ ..|++||+.+++... +..+.+.+ .+++|+|||+.++++.+.++ .|++||+.+.. ..
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~-~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~ 271 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMN-GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LT 271 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCc-cceEECCCCCEEEEEECCCCCccEEEEECCCCC--EE
Confidence 389999999987754 479999998876533 33343344 45699999988777776655 48888886642 23
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEEe
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLCW 101 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~sW 101 (574)
.+..|.......+|+|||+.|+..+.
T Consensus 272 ~l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred ECCCCCCCCCCEEECCCCCEEEEEEC
Confidence 45555555667899999999887653
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.77 E-value=0.00011 Score=76.93 Aligned_cols=107 Identities=15% Similarity=0.218 Sum_probs=85.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCc---eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC-CC-CCceeEE
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TG-RSPKVSW 76 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~---~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl-~~-~~~ll~t 76 (574)
|+.|+..+|.+.....|.||...... ..+++..|...+ .+|+|+|..++ |++|+.|..-++|.. .+ .......
T Consensus 18 wn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~v-tgvdWap~snr-Ivtcs~drnayVw~~~~~~~Wkptlv 95 (361)
T KOG1523|consen 18 WNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIV-TGVDWAPKSNR-IVTCSHDRNAYVWTQPSGGTWKPTLV 95 (361)
T ss_pred ecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcce-eEEeecCCCCc-eeEccCCCCccccccCCCCeecccee
Confidence 88999999999999999999986554 467888777666 88999999866 999999999999998 33 2233345
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEe
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFID 110 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~ 110 (574)
+..|+..++||.|+|....|++++..+...+++.
T Consensus 96 LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~ 129 (361)
T KOG1523|consen 96 LLRINRAATCVKWSPKENKFAVGSGARLISVCYY 129 (361)
T ss_pred EEEeccceeeEeecCcCceEEeccCccEEEEEEE
Confidence 6778889999999999999999874443334333
No 196
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.00036 Score=78.50 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=76.5
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEE-eccC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW-LKQH 80 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~t-l~gH 80 (574)
|. ++..|++.+.+|.|.-||+.+++.+..+....+.+ ..++.+|.+ ..++.||+||.+.+++...+...... +.-.
T Consensus 77 W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~I-Wsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq 153 (691)
T KOG2048|consen 77 WA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAI-WSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQ 153 (691)
T ss_pred Ec-cCCeEEeecCCceEEEEecccCceeEEecCCCcce-eEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccc
Confidence 44 56788899999999999999999998888665566 666999998 55889999997777777554333322 3334
Q ss_pred CCCeEEEEEcCCCCEEEEEEec
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD 102 (574)
++.|.+++|++++..|+.++-|
T Consensus 154 ~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 154 KSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cceEEEEEecCCccEEEecccC
Confidence 5789999999999999997733
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.00019 Score=76.72 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=78.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCC------CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeE
Q 008196 2 YNCKDEHLASISLSGDLILHNLAS------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~T------g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~ 75 (574)
|+.+|++|++|+.|-.++||++.. .+.+..+..||..-+.||+|.-.. .+|++|+.+++|.+.|+.+.+.+
T Consensus 64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~qsi-- 140 (609)
T KOG4227|consen 64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQSI-- 140 (609)
T ss_pred eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecccceee--
Confidence 889999999999999999999853 344555555554445899998876 67999999999999999775433
Q ss_pred EeccCCC---CeEEEEEcCCCCEEEEEEecCCcCEEEe
Q 008196 76 WLKQHSA---PTAGISFSSDDKAVSSLCWQRAKPVFID 110 (574)
Q Consensus 76 tl~gH~~---~VtSVaFSPDG~~LaS~sWD~sg~viv~ 110 (574)
....|.. .|..+.-+|....|++.+ +.+.+.++
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t--~~~~V~~~ 176 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVT--RAKLVSFI 176 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEe--cCceEEEE
Confidence 2334444 799999999988888876 33444433
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.75 E-value=0.00027 Score=79.46 Aligned_cols=123 Identities=16% Similarity=0.254 Sum_probs=80.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCe---------------------------------------EEE
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQV---------------------------------------LRV 42 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~V---------------------------------------vs~ 42 (574)
|+.||+.+|+|+.|..|+||+-.- ...++..|+.+ +.+
T Consensus 61 ys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~ 137 (1081)
T KOG1538|consen 61 YAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIIC 137 (1081)
T ss_pred EccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEE
Confidence 789999999999999999998632 11222112222 233
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEeCCCCC-ceeEEeccCCCCeEEEEEcCC-----CCEEEEEEecCC-------cCEEE
Q 008196 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWLKQHSAPTAGISFSSD-----DKAVSSLCWQRA-------KPVFI 109 (574)
Q Consensus 43 LafSPdGr~LLaSgS~DGtVrLWDl~~~~-~ll~tl~gH~~~VtSVaFSPD-----G~~LaS~sWD~s-------g~viv 109 (574)
++|..|| .+++-|-.||+|.|-+-.+.. ..+....+.+.+|++|+|+|. ...++..-|... +..+-
T Consensus 138 CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig 216 (1081)
T KOG1538|consen 138 CSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG 216 (1081)
T ss_pred eeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeec
Confidence 4677787 668888999999998765532 233444567889999999985 356777777543 22222
Q ss_pred eccC-----------CCcceeEecccCCCe
Q 008196 110 DETT-----------CKAETALLGGAVGDS 128 (574)
Q Consensus 110 ~e~~-----------~s~e~aLlg~~~~ds 128 (574)
.+++ ..+|..++|+.....
T Consensus 217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred ccccCCCCchhheeccCCcEEEEccCCCce
Confidence 1221 256788888776653
No 199
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.74 E-value=8.5e-05 Score=86.56 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=79.6
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeE-EecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAA-ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~-t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g 79 (574)
+|+.||+++++.++|..+++|++++.+... ..-+|...++.| .|.|. .|++++.|.++++|+..+. .+..+.+
T Consensus 182 ~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~-~~~~n---~i~t~gedctcrvW~~~~~--~l~~y~~ 255 (967)
T KOG0974|consen 182 VTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC-CFLPN---RIITVGEDCTCRVWGVNGT--QLEVYDE 255 (967)
T ss_pred EEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE-Eeccc---eeEEeccceEEEEEecccc--eehhhhh
Confidence 367899999999999999999999988766 666788888777 78886 4999999999999988664 2336777
Q ss_pred CCCC-eEEEEEcCCCCEEEEEEecC
Q 008196 80 HSAP-TAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 80 H~~~-VtSVaFSPDG~~LaS~sWD~ 103 (574)
|... |+.++..++...++|++.|.
T Consensus 256 h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 256 HSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred hhhcceeEEEEcCCceEEEeeccCc
Confidence 7654 99999988888888865443
No 200
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.00061 Score=74.77 Aligned_cols=96 Identities=14% Similarity=0.264 Sum_probs=66.4
Q ss_pred CccCCCCEEEEEeC-C--CcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCc--EEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLASISL-S--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LASGS~-D--GtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGt--VrLWDl~~~~~ll~ 75 (574)
.|+|||++|+..+. + ..|.+||+.+++... +....+.. ...+|+|||++++++.+.++. |.+||+.+.. ..
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~-~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~ 299 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGIN-GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LT 299 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCc-CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eE
Confidence 48999999887654 2 358899998876532 22222222 344899999887777888886 6666776543 33
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.+..|...+...+|+|||+.|+..+
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s 324 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTS 324 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEE
Confidence 4555655677889999999888765
No 201
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.74 E-value=0.00017 Score=84.22 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=75.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
++.+.-++++|+.-+.|++|+..-.+.-..+.+|.+.++ .+.|+-|| ++++++++|.++++|++.+.........+|.
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF-~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIF-SIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceE-EEEEccCC-cEEEEEecCcceeeeecccccccCccccccc
Confidence 345566899999999999999973333234889999884 55999999 5699999999999999977554444678999
Q ss_pred CCeEEEEEcCCCCEEEEE
Q 008196 82 APTAGISFSSDDKAVSSL 99 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~ 99 (574)
..|+.++|.|+ .|+++
T Consensus 219 aRvw~~~~~~n--~i~t~ 234 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITV 234 (967)
T ss_pred ceeEEEEeccc--eeEEe
Confidence 99999999988 66663
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.72 E-value=0.00078 Score=70.53 Aligned_cols=66 Identities=24% Similarity=0.410 Sum_probs=56.8
Q ss_pred cCCCCEEEEEeCCCc-EEEEECCCCceeEEecCC-CCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC
Q 008196 3 NCKDEHLASISLSGD-LILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 3 SpDG~~LASGS~DGt-VrIWDl~Tg~~l~t~~gh-~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~ 69 (574)
+.+|.++||+|..|+ |+|||..+|..+..++.. ...-+.||+|+|++ .+|+.+++.|+|+||.+..
T Consensus 190 n~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 190 NLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeec
Confidence 578999999999998 679999999999998843 33455999999998 7799999999999999843
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.71 E-value=0.00052 Score=71.07 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=67.3
Q ss_pred ccCCCCEEEEEe-CCCcEEEEECCC-Cc---eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee--
Q 008196 2 YNCKDEHLASIS-LSGDLILHNLAS-GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-- 74 (574)
Q Consensus 2 FSpDG~~LASGS-~DGtVrIWDl~T-g~---~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll-- 74 (574)
|+++|++|++++ .++.|.+|++.+ +. .+..+.+ ...+ .+++|+|++++++++...++.|.+||+.....+.
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~-~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGC-HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcc-cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 789999888877 488999999964 32 2333322 2233 4568999998877777788999999996522211
Q ss_pred ----EEeccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 75 ----SWLKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 75 ----~tl~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
.... .......+.|+|+|+++++....
T Consensus 165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~ 195 (330)
T PRK11028 165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNEL 195 (330)
T ss_pred CCCceecC-CCCCCceEEECCCCCEEEEEecC
Confidence 0111 12346789999999999887643
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.69 E-value=0.0007 Score=72.83 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=69.6
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc-
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ- 79 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g- 79 (574)
+|++||++++.++.||.|.++|+.+++.+..++...+ . ..+++++||+++++++..++.|.++|..+.+.. ..+..
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~-~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v-~~I~~~ 119 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-P-RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV-KTIPTG 119 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-E-EEEEE--TTTEEEEEEEETTEEEEEETTT--EE-EEEE--
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-c-ceEEEcCCCCEEEEEecCCCceeEeccccccce-eecccc
Confidence 3789999999999999999999999999999985443 3 667999999887778888999999999775433 22221
Q ss_pred ------CCCCeEEEEEcCCCCEEEEEEecC
Q 008196 80 ------HSAPTAGISFSSDDKAVSSLCWQR 103 (574)
Q Consensus 80 ------H~~~VtSVaFSPDG~~LaS~sWD~ 103 (574)
....+..|..++....++....+.
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~ 149 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDT 149 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccC
Confidence 234577888888888666655443
No 205
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.00012 Score=77.11 Aligned_cols=90 Identities=22% Similarity=0.380 Sum_probs=70.3
Q ss_pred cCCCCEEEEEe----CCCcEEEEECCCCce-eEEec-CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC--cee
Q 008196 3 NCKDEHLASIS----LSGDLILHNLASGAK-AAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKV 74 (574)
Q Consensus 3 SpDG~~LASGS----~DGtVrIWDl~Tg~~-l~t~~-gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~--~ll 74 (574)
+++++.+++|. .|-.|.+||++..+. ++.+. .|++.| ++|+|+|....+|++|+.||-|.|||+.... -.+
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV-T~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL 204 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDV-TQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL 204 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcc-eeEEecCCCCCeEEeecccceEEeeecCCCcchhhH
Confidence 34677888887 577899999988766 66665 455666 8889999999999999999999999995431 123
Q ss_pred EEeccCCCCeEEEEEcCCC
Q 008196 75 SWLKQHSAPTAGISFSSDD 93 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPDG 93 (574)
.....|...|.++.|..++
T Consensus 205 ~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred HHhhcccceeeeeeeecCC
Confidence 3445677789999998776
No 206
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.65 E-value=0.00082 Score=73.45 Aligned_cols=97 Identities=10% Similarity=0.113 Sum_probs=62.3
Q ss_pred CccCCCCEEEEEe-CCCcEEEE--ECCC-CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCC--CcEEEEeCCCCCcee
Q 008196 1 MYNCKDEHLASIS-LSGDLILH--NLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKV 74 (574)
Q Consensus 1 ~FSpDG~~LASGS-~DGtVrIW--Dl~T-g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~D--GtVrLWDl~~~~~ll 74 (574)
.|+|||++|+..+ .+|...|| ++.. +.....+..+...+ ...+|+|||+++++++..+ ..|.+||+.+....
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~-~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~- 364 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNS-SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY- 364 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCc-cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-
Confidence 3899999888766 46655555 4432 23344454444444 4558999997766665444 36899999765332
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 75 SWLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.+......+.++.|+|||+.|+...
T Consensus 365 -~Lt~~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 365 -QLTTSPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred -EccCCCCCccceEECCCCCEEEEEE
Confidence 3433334567899999999887543
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.64 E-value=0.00034 Score=73.18 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=69.5
Q ss_pred EEEE-EeCCCcEEEEECCCCce--eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCc-EEEEeCCCCCceeEEecc-CCC
Q 008196 8 HLAS-ISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-LHLWDTTGRSPKVSWLKQ-HSA 82 (574)
Q Consensus 8 ~LAS-GS~DGtVrIWDl~Tg~~--l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGt-VrLWDl~~~~~ll~tl~g-H~~ 82 (574)
+||. |-.-|+|+|-|+...+. -..+..|...+ .||+.+-+| .++||+|..|+ |||||...+..+.+.-.| ...
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~I-acv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A 227 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDI-ACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRA 227 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCce-eEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchh
Confidence 4443 44679999999965444 35677788777 999999999 78999999998 899999775444333333 234
Q ss_pred CeEEEEEcCCCCEEEEEE
Q 008196 83 PTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 83 ~VtSVaFSPDG~~LaS~s 100 (574)
.|.||+|||+..+|+..+
T Consensus 228 ~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred eEEEEEeCCCccEEEEEc
Confidence 599999999999999887
No 208
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.63 E-value=0.001 Score=72.38 Aligned_cols=97 Identities=15% Similarity=0.261 Sum_probs=64.5
Q ss_pred CccCCCCEEE-EEeCCCc--EEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCC--cEEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLA-SISLSGD--LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LA-SGS~DGt--VrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DG--tVrLWDl~~~~~ll~ 75 (574)
.|+|||+.|+ +.+.++. |.+||+.++.. ..+..+.... ...+|+|||++++++...++ .|++||+.+....
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~-~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-- 327 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAID-TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-- 327 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCcc-CceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--
Confidence 3899999775 5555555 77789977665 4455444333 55699999977665554444 5777787664322
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEEe
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLCW 101 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~sW 101 (574)
.+..+...+....|+|||+.|+....
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEc
Confidence 33333445677899999999987653
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.62 E-value=0.0012 Score=71.93 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=62.5
Q ss_pred CccCCCCEEE-EEeCCC--cEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCc--EEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLA-SISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LA-SGS~DG--tVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGt--VrLWDl~~~~~ll~ 75 (574)
.|+|||+.|+ +.+.++ .|.+||+.+++. ..+..+.... ..++|+|||++++++...++. |.++|+.+....
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~-~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-- 329 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGID-TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-- 329 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCc-cceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--
Confidence 3899999775 445555 599999987765 4454443333 445999999776666656666 555565443322
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.+..+......++|+|||++|+...
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEE
Confidence 2222333455789999999998765
No 210
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.57 E-value=0.00092 Score=72.69 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=61.9
Q ss_pred CccCCCCEEE-EEeCCCcEEEEE--CCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC--CCCCceeE
Q 008196 1 MYNCKDEHLA-SISLSGDLILHN--LASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LA-SGS~DGtVrIWD--l~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl--~~~~~ll~ 75 (574)
.|+|||+.|+ +.+.++...||. +..+ .+..+..+.... ....|+|||+++++++..++...||.+ .+......
T Consensus 246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~-~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 246 AWSPDGRTLAVALSRDGNSQIYTVNADGS-GLRRLTQSSGID-TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCC-CcEECCCCCCCC-cCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 3899999876 567788766665 4333 345555444333 445899999886666656677788876 33222221
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEEe
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLCW 101 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~sW 101 (574)
... .......+|+|||++|+..+.
T Consensus 324 t~~--g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 324 TFT--GSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ecC--CCCcCceEECCCCCEEEEEEc
Confidence 222 223456789999999987653
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.57 E-value=0.0012 Score=68.53 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=65.6
Q ss_pred ccCCCCEEEEEe-CCCcEEEEECC-CCce--eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCc---ee
Q 008196 2 YNCKDEHLASIS-LSGDLILHNLA-SGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KV 74 (574)
Q Consensus 2 FSpDG~~LASGS-~DGtVrIWDl~-Tg~~--l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~---ll 74 (574)
|+|++++|+.++ .++.|.+|++. ++.. +.... ..+.+ ..|+|+|+++.++++.-.++.|.+||+..... .+
T Consensus 42 ~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p-~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~ 119 (330)
T PRK11028 42 ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP-THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI 119 (330)
T ss_pred ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc-eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce
Confidence 789999887765 58889999996 3432 22222 22334 56799999977666655699999999953221 12
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 75 SWLKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
..+. +.....+++|+|+++++++..+.
T Consensus 120 ~~~~-~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 120 QIIE-GLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred eecc-CCCcccEeEeCCCCCEEEEeeCC
Confidence 2222 33346788999999999876644
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.57 E-value=0.00049 Score=73.09 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=68.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccC--CCeEEEEEeC-CCcEEEEeCCCCCceeEEeccCCC
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGD-DGTLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPd--Gr~LLaSgS~-DGtVrLWDl~~~~~ll~tl~gH~~ 82 (574)
.+.|+.+-.+. |.|||+.+.+.++++..-.......+++++. +.++..-++. -|.|.|||+.+. ..+..+.+|.+
T Consensus 97 r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~ 174 (391)
T KOG2110|consen 97 RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKG 174 (391)
T ss_pred cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc-eeeeEEEecCC
Confidence 45666665554 9999999999999888652222123366654 3354444444 588999999773 34567889999
Q ss_pred CeEEEEEcCCCCEEEEEEe
Q 008196 83 PTAGISFSSDDKAVSSLCW 101 (574)
Q Consensus 83 ~VtSVaFSPDG~~LaS~sW 101 (574)
.+.|++|+++|.+|+|++-
T Consensus 175 ~lAalafs~~G~llATASe 193 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASE 193 (391)
T ss_pred ceeEEEECCCCCEEEEecc
Confidence 9999999999999999883
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.56 E-value=7.8e-05 Score=80.91 Aligned_cols=100 Identities=17% Similarity=0.301 Sum_probs=85.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|-|.-=+|++++..|-++..|+.+|+.+..+....+.+ .+++.+|-+ -++-.|..+|+|.+|......+++ .+..|.
T Consensus 217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~-~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLv-KiLcH~ 293 (545)
T KOG1272|consen 217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRT-DVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLV-KILCHR 293 (545)
T ss_pred ccchhheeeecccCCceEEEeechhhhhHHHHccCCcc-chhhcCCcc-ceEEEcCCCceEEecCCCCcchHH-HHHhcC
Confidence 44555578999999999999999999999999777777 888999986 678899999999999998866554 577899
Q ss_pred CCeEEEEEcCCCCEEEEEEecCC
Q 008196 82 APTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
++|.+|++.++|++++|.+-|+.
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred CCcceEEECCCCcEEeecccccc
Confidence 99999999999999999876653
No 214
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.51 E-value=0.00091 Score=73.47 Aligned_cols=104 Identities=13% Similarity=0.275 Sum_probs=78.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCce---eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEec
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~---l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~ 78 (574)
|+|.+.-|..-+..+.+..|+...+.. ...|..+....+.||+|.++| . +++|..+|+|.||+..+.... ++..
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-d-viTgDS~G~i~Iw~~~~~~~~-k~~~ 284 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-D-VITGDSGGNILIWSKGTNRIS-KQVH 284 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-C-EEeecCCceEEEEeCCCceEE-eEee
Confidence 778776555555678899999988754 445666666777999999998 5 799999999999999774433 3444
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 79 QHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
+|...|.+++.-.+|..|- +. ++.+++.|+
T Consensus 285 aH~ggv~~L~~lr~GtllS-Gg--KDRki~~Wd 314 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GG--KDRKIILWD 314 (626)
T ss_pred ecCCceEEEEEecCccEee-cC--ccceEEecc
Confidence 9999999999999988664 43 444444444
No 215
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.50 E-value=0.0022 Score=69.15 Aligned_cols=96 Identities=16% Similarity=0.267 Sum_probs=67.1
Q ss_pred CccCCCCEEEEEeCC---CcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCC--cEEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LASGS~D---GtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DG--tVrLWDl~~~~~ll~ 75 (574)
.|+|||++|+..+.+ ..|.+||+.+++... +....+.. ...+|+|||++++++...++ .|.+||+.+.. ..
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~-~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 280 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLN-GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ--LS 280 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCc-CCeEECCCCCEEEEEEccCCCceEEEEECCCCC--eE
Confidence 389999999877643 468999998886533 33222222 34599999988777776666 57777887643 23
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.+..+...+....|+|||+.|+..+
T Consensus 281 ~lt~~~~~~~~~~~spDg~~i~f~s 305 (430)
T PRK00178 281 RVTNHPAIDTEPFWGKDGRTLYFTS 305 (430)
T ss_pred EcccCCCCcCCeEECCCCCEEEEEE
Confidence 4555665667789999999887765
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.46 E-value=0.00094 Score=70.36 Aligned_cols=94 Identities=14% Similarity=0.275 Sum_probs=71.4
Q ss_pred ccCCCCEEEE-EeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKDEHLAS-ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~~LAS-GS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|..|..++.+ ...|+.|.+|++..-+....+......+ ..++|+|||+++|.+...|-.|.+|.+.+....+ +.-.
T Consensus 56 W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agl-s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~p 132 (447)
T KOG4497|consen 56 WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGL-SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHP 132 (447)
T ss_pred eeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcc-eeeeECCCcceEeeeecceeEEEEEEeccceeEE--eccc
Confidence 4445554444 4579999999998888878887666666 5569999999999999999999999997643332 3333
Q ss_pred CCCeEEEEEcCCCCEEEE
Q 008196 81 SAPTAGISFSSDDKAVSS 98 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS 98 (574)
+..+..++|+|||++.+.
T Consensus 133 K~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 133 KTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred ccCceeEEECCCCceeee
Confidence 445788999999987765
No 217
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.46 E-value=0.00063 Score=70.63 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=66.9
Q ss_pred ccCCC-CEEEEEeCCCcEEEEECCCCc------------------------------------------------eeEEe
Q 008196 2 YNCKD-EHLASISLSGDLILHNLASGA------------------------------------------------KAAEL 32 (574)
Q Consensus 2 FSpDG-~~LASGS~DGtVrIWDl~Tg~------------------------------------------------~l~t~ 32 (574)
|..++ +.||+.+.||.|+++|++.-+ .+..+
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 44433 488999999999999986411 12344
Q ss_pred cCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC------ceeEEeccCCCCeEEEEEcC-CCCEEEEEE
Q 008196 33 KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSS-DDKAVSSLC 100 (574)
Q Consensus 33 ~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~------~ll~tl~gH~~~VtSVaFSP-DG~~LaS~s 100 (574)
++|.+.| ..|+|.|....-|++||+|..+.|||+.... +.+ .+. ..+.|.-+.|++ .+.+|+.+.
T Consensus 284 ~~H~a~V-NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil-ay~-a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 284 RNHQASV-NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL-AYT-AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred hcCcccc-cceEecCCCCceeeecCCcceEEEEecccccccCCCCchh-hhh-ccceeeeeeecccCCCEEEEEe
Confidence 4777777 8889999988889999999999999994321 122 122 345699999984 455555443
No 218
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00047 Score=71.94 Aligned_cols=77 Identities=17% Similarity=0.367 Sum_probs=60.2
Q ss_pred EEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC---CCCceeEEeccCCCCeEEEEEc-C-CCCEEEEEEecCC
Q 008196 30 AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---GRSPKVSWLKQHSAPTAGISFS-S-DDKAVSSLCWQRA 104 (574)
Q Consensus 30 ~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~---~~~~ll~tl~gH~~~VtSVaFS-P-DG~~LaS~sWD~s 104 (574)
..|...+..++.|+.|.+.|++ +++|+.|++|+|||.. +...+....+.|.+.|+.|.|- | -|+.++++++|+.
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred cccccCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 4455445577799999999977 9999999999999963 2233445578899999999995 4 4899999998876
Q ss_pred cCE
Q 008196 105 KPV 107 (574)
Q Consensus 105 g~v 107 (574)
..+
T Consensus 85 v~i 87 (361)
T KOG2445|consen 85 VSI 87 (361)
T ss_pred eee
Confidence 443
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.44 E-value=0.0002 Score=77.83 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=69.5
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~ 82 (574)
||-.-.+..|..+|+|-+|.....+.+..+-.|.+.| +.|++.++| +|++|.|.|..|+|||++....+. ++.. ..
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V-~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql~-t~~t-p~ 335 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV-SSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQLH-TYRT-PH 335 (545)
T ss_pred CCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCc-ceEEECCCC-cEEeecccccceeEeeeccccccc-eeec-CC
Confidence 4556688899999999999998888888888899888 888999999 669999999999999997754332 2222 23
Q ss_pred CeEEEEEcCCC
Q 008196 83 PTAGISFSSDD 93 (574)
Q Consensus 83 ~VtSVaFSPDG 93 (574)
++..++||..|
T Consensus 336 ~a~~ls~Sqkg 346 (545)
T KOG1272|consen 336 PASNLSLSQKG 346 (545)
T ss_pred Ccccccccccc
Confidence 46778887654
No 220
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.40 E-value=0.0027 Score=69.45 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=60.8
Q ss_pred CccCCCCEEEEEeC-CC--c--EEEEECCCC---ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC--CCC
Q 008196 1 MYNCKDEHLASISL-SG--D--LILHNLASG---AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGR 70 (574)
Q Consensus 1 ~FSpDG~~LASGS~-DG--t--VrIWDl~Tg---~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl--~~~ 70 (574)
.|+|||++||..+. +| . +.+|++..+ ........+.... ...+|+|||++++++...+|...||.+ ...
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~-~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQ-GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCc-CCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence 38999998886553 22 3 444777653 2222222222222 344899999877766666777666654 321
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCEEEEEEe
Q 008196 71 SPKVSWLKQHSAPTAGISFSSDDKAVSSLCW 101 (574)
Q Consensus 71 ~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sW 101 (574)
......+..+...+.+.+|+|||+.|+...-
T Consensus 316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred ccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 1122334445556788999999999987653
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.36 E-value=0.0025 Score=68.62 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=71.0
Q ss_pred CCEE-EEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 6 DEHL-ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 6 G~~L-ASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
++++ ++-..++.|.|.|..+.+.+..+....... ..+.|+|||++ ++.++.||.|.+||+.+.+ .+..+..-. ..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h-~~~~~s~Dgr~-~yv~~rdg~vsviD~~~~~-~v~~i~~G~-~~ 80 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPH-AGLKFSPDGRY-LYVANRDGTVSVIDLATGK-VVATIKVGG-NP 80 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEE-EEEE-TT-SSE-EEEEETTSEEEEEETTSSS-EEEEEE-SS-EE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCce-eEEEecCCCCE-EEEEcCCCeEEEEECCccc-EEEEEecCC-Cc
Confidence 3455 455679999999999999999998654433 44589999966 6666789999999997754 444444433 46
Q ss_pred EEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 85 AGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 85 tSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.++++++||+++++++|......+++.
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred ceEEEcCCCCEEEEEecCCCceeEecc
Confidence 889999999999999887666666664
No 222
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.00068 Score=75.11 Aligned_cols=66 Identities=26% Similarity=0.400 Sum_probs=53.2
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCC------C----ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLAS------G----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~T------g----~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~ 69 (574)
+..+++++++|+.||+|+.|++.. . .....+.||.+.+ ..++||... +.|++|+.||+|++|+...
T Consensus 352 v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdav-w~l~~s~~~-~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 352 VPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAV-WLLALSSTK-DRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred ecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccce-eeeeecccc-cceeeecCCceEEeeccCC
Confidence 467899999999999999996531 1 2345777898888 667999886 5599999999999999844
No 223
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.0041 Score=63.50 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=68.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCC---------C-ceeEEecCCCCCeEEEEEEc-------------------------
Q 008196 2 YNCKDEHLASISLSGDLILHNLAS---------G-AKAAELKDPNEQVLRVLDYS------------------------- 46 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~T---------g-~~l~t~~gh~~~Vvs~LafS------------------------- 46 (574)
++|.+++|+.|..+|+|-++.+.. | ..+..+++|.+.+ +.|+|.
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpi-y~~~f~d~~Lls~gdG~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPI-YYLAFHDDFLLSGGDGLVYGWEWNEEEESLA 96 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCe-eeeeeehhheeeccCceEEEeeehhhhhhcc
Confidence 578888999999999998888753 1 2244555666666 444554
Q ss_pred ---------------------------cCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE
Q 008196 47 ---------------------------RNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSL 99 (574)
Q Consensus 47 ---------------------------PdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~ 99 (574)
|.... |+.++.|+.++.||+... .....+++|.+.|.|+.--.....|+++
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG 174 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSG 174 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeec
Confidence 22222 344446666666776553 2345789999999999983333445565
Q ss_pred EecCCcCEEEeccCCCcceeEe
Q 008196 100 CWQRAKPVFIDETTCKAETALL 121 (574)
Q Consensus 100 sWD~sg~viv~e~~~s~e~aLl 121 (574)
+ .++.+.+|+.....++..+
T Consensus 175 ~--EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 175 A--EDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred C--CCccEEEEeccccceeEEe
Confidence 4 3344444443333333333
No 224
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.29 E-value=0.00085 Score=74.18 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=50.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC
Q 008196 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~ 69 (574)
..|+.++.||.+.|.+- .++..+.+..|.+.+ .|-+|+||| .-|+++|.||.|++|.-.+
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~-~~gRW~~dG-tgLlt~GEDG~iKiWSrsG 135 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHAAAI-SSGRWSPDG-AGLLTAGEDGVIKIWSRSG 135 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhhhhh-hhcccCCCC-ceeeeecCCceEEEEeccc
Confidence 47888899999999987 677778888888888 555999999 5599999999999998643
No 225
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.28 E-value=0.0012 Score=71.77 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=64.1
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCCCce-----eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC----CCCc
Q 008196 3 NCK-DEHLASISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT----GRSP 72 (574)
Q Consensus 3 SpD-G~~LASGS~DGtVrIWDl~Tg~~-----l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~----~~~~ 72 (574)
+|. -.+|||++.|++++|||++.-.. +..+ .|...| ....|||.+.. |+|-|.|..|+|||.. ..++
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV-~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSV-NSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecc-ccccee-eeeEEcCCCCc-eEeeccCCceEEeecccccccCCc
Confidence 443 35899999999999999975322 2232 366566 66699999877 8999999999999983 2222
Q ss_pred eeEEeccCCC----C--eEEEEEcCCCCEEEEEEec
Q 008196 73 KVSWLKQHSA----P--TAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 73 ll~tl~gH~~----~--VtSVaFSPDG~~LaS~sWD 102 (574)
.. ...|.. + ..-..|.|+..+|+.+-+-
T Consensus 408 ~~--~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~ 441 (498)
T KOG4328|consen 408 LG--TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP 441 (498)
T ss_pred cc--eeeccCcccccccchhheeCCCccEEEEeccC
Confidence 21 112221 1 3456788888888776543
No 226
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.0017 Score=74.99 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=70.1
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCcee---EEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC---CCceeE
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG---RSPKVS 75 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l---~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~---~~~ll~ 75 (574)
+++.|++.+.. .+..+.+|+..++... +...-||...+.|.++||++ .++++|..||.|.+|.--+ ......
T Consensus 168 ~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 168 DNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccce
Confidence 45566655555 5667889998775421 12223344446888999998 5599999999999996522 112233
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
.+.=|.+.|.+++|+.+|.+|++++|.
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred EEEecccccceeEEecCCceEeecccc
Confidence 455588899999999999999998765
No 227
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.15 E-value=0.0083 Score=63.84 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=63.8
Q ss_pred ccCCCCEEEE-EeCC--CcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCC--cEEEEeCCCCCceeEE
Q 008196 2 YNCKDEHLAS-ISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSW 76 (574)
Q Consensus 2 FSpDG~~LAS-GS~D--GtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DG--tVrLWDl~~~~~ll~t 76 (574)
|+|||+.|+. .+.+ ..|.+||+.++.. ..+..+.... ...+|+|||++++++...++ .|.+||+.+.. ...
T Consensus 241 ~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~-~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~ 316 (417)
T TIGR02800 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGID-TEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRR 316 (417)
T ss_pred ECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCC-CCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEE
Confidence 8999997764 4444 4588999977654 3444343333 34489999977666655555 46667776543 223
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
+..+...+..++|+|+|++|+....+
T Consensus 317 l~~~~~~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 317 LTFRGGYNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred eecCCCCccCeEECCCCCEEEEEEcc
Confidence 44455567788999999998887644
No 228
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=97.15 E-value=0.001 Score=59.91 Aligned_cols=45 Identities=31% Similarity=0.393 Sum_probs=39.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 530 EILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 530 e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
+.|.+|..+-.+|..-|.++...+.+|.+||.+||-||+.||.+|
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777888888899999999999999999999999875
No 229
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.11 E-value=0.0017 Score=73.51 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=75.1
Q ss_pred ccCCCCEEEEEeCCCcEEEEECC-CCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC--CCCceeEEec
Q 008196 2 YNCKDEHLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT--GRSPKVSWLK 78 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~-Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~--~~~~ll~tl~ 78 (574)
|+|=+..++..+.|.+|+||.-. ....+..+..+...+ .+++|||--..+++++..||.|.|||+. ...+. ....
T Consensus 406 ~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v-~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv-~s~~ 483 (555)
T KOG1587|consen 406 RNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYV-TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV-LSQK 483 (555)
T ss_pred cCCCccceeeeeccceeEeccccCCCCcchhhhhcccee-eeeEEcCcCceEEEEEcCCCceehhhhhccccCCc-cccc
Confidence 45555544444449999999987 555677777666556 7789999877889999999999999993 22222 2333
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 79 QHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
-+....+.+.|+++|+.|+.+. ..|.+.+.+
T Consensus 484 ~~~~~l~~~~~s~~g~~lavGd--~~G~~~~~~ 514 (555)
T KOG1587|consen 484 VCSPALTRVRWSPNGKLLAVGD--ANGTTHILK 514 (555)
T ss_pred ccccccceeecCCCCcEEEEec--CCCcEEEEE
Confidence 3456678888899999998774 556555554
No 230
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.10 E-value=0.0083 Score=65.94 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=62.4
Q ss_pred CccCCCCEEEE-EeCCCc--EEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEE--EeCCCCCceeE
Q 008196 1 MYNCKDEHLAS-ISLSGD--LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL--WDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LAS-GS~DGt--VrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrL--WDl~~~~~ll~ 75 (574)
.|+|||+.|+. .+.++. |.+||+.+++. ..+..+.... ...+|+|||+.++++...++...| +|+.+......
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~-~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAID-TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCc-cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 38999997765 556664 77889877654 4444443333 445899999887777666665444 56654332221
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
+..++ .....+|+|||++|+....+
T Consensus 346 t~~g~--~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 346 TFEGE--QNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred ecCCC--CCcCeeECCCCCEEEEEEec
Confidence 22232 23457999999998876543
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0012 Score=68.65 Aligned_cols=86 Identities=12% Similarity=0.034 Sum_probs=63.1
Q ss_pred CEEEEEeCCCcEEEEECC-CCceeEE-ecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 7 EHLASISLSGDLILHNLA-SGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~-Tg~~l~t-~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
+++++|+.|+.+.-||++ .++.++. .+-|+..|+ +|.-+|...++|++|+.|-.|++||.+.-...+ .-..-.+.|
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~-SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-~~~~v~GGV 256 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV-SIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-FKAKVGGGV 256 (339)
T ss_pred ceEEecCCCceEEEEEecCCcceeeecceeeecceE-EEecCCCCCceEEEeccccceeeeehhcccCcc-ccCccccce
Confidence 689999999999999998 4555554 556777784 446666555889999999999999996433222 112234679
Q ss_pred EEEEEcCCCC
Q 008196 85 AGISFSSDDK 94 (574)
Q Consensus 85 tSVaFSPDG~ 94 (574)
|.+.++|.-.
T Consensus 257 WRi~~~p~~~ 266 (339)
T KOG0280|consen 257 WRIKHHPEIF 266 (339)
T ss_pred EEEEecchhh
Confidence 9999998643
No 232
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.05 E-value=0.016 Score=63.50 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=64.2
Q ss_pred CccCCCCE-EEEEeC---CCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCC--cEEEEeCCCCCcee
Q 008196 1 MYNCKDEH-LASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKV 74 (574)
Q Consensus 1 ~FSpDG~~-LASGS~---DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DG--tVrLWDl~~~~~ll 74 (574)
.|+|||+. ++..+. +..|.++|+.+|+...... ..+.. .+.+|+|||++++++.+.++ .|.++|+.+.. .
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~-~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~--~ 269 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGML-VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT--L 269 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcE-EeeEECCCCCEEEEEEccCCCcEEEEEECCCCc--E
Confidence 38999984 664443 4679999998887644333 33333 44589999988888776665 46666775543 2
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEEe
Q 008196 75 SWLKQHSAPTAGISFSSDDKAVSSLCW 101 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPDG~~LaS~sW 101 (574)
..+..+........|+|||+.|+-.+.
T Consensus 270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 270 TQITNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred EEcccCCCccCccEECCCCCEEEEEEC
Confidence 334444433445689999998887763
No 233
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.04 E-value=0.0012 Score=69.60 Aligned_cols=94 Identities=16% Similarity=0.224 Sum_probs=68.9
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|+|+|+|+|+.++- .+.|-|..+-+.+.-|. .-+.| ..|-|..|..++|..+..|+.|.+|++...+ ....+..-
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki-~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w~ckIdeg 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKI-VYIEWKADSCHILCVAYKDPKVQVWSLVQPE-WYCKIDEG 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHh-hheeeeccceeeeeeeeccceEEEEEeecce-eEEEeccC
Confidence 389999999999755 88899987665543333 22345 4458999987777777889999999996532 22245556
Q ss_pred CCCeEEEEEcCCCCEEEE
Q 008196 81 SAPTAGISFSSDDKAVSS 98 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS 98 (574)
.+++.+++|||||+.|+.
T Consensus 91 ~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILL 108 (447)
T ss_pred CCcceeeeECCCcceEee
Confidence 678999999999976665
No 234
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0019 Score=72.64 Aligned_cols=87 Identities=24% Similarity=0.305 Sum_probs=70.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
|+|.-.+||.+..+|.|.++.+. .+.++++..|...+..+++|.||| ++|+.|-.||+|++.|+.....+........
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l~~~~~s~e 105 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRLVSFLFSVE 105 (665)
T ss_pred EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCceeccccccc
Confidence 88999999999999999999996 889999998877776799999998 7899999999999999976544433233334
Q ss_pred CCeEEEEEc
Q 008196 82 APTAGISFS 90 (574)
Q Consensus 82 ~~VtSVaFS 90 (574)
..|.++.|.
T Consensus 106 ~~is~~~w~ 114 (665)
T KOG4640|consen 106 TDISKGIWD 114 (665)
T ss_pred cchheeecc
Confidence 456666654
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0039 Score=66.81 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=81.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCce-eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 6 DEHLASISLSGDLILHNLASGAK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~-l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
...||++..-++|++||...+.. +.+|......+ .++...|.+ ++|++|..-+.+..||+++.......+.+..+.|
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~i-s~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPI-SSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI 293 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcc-eeeeecCCC-cEEEEecccchhheecccCceeeccccCCccCCc
Confidence 56899999999999999987754 67777555555 888999998 6799999999999999988655555578888899
Q ss_pred EEEEEcCCCCEEEEEEecCC
Q 008196 85 AGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 85 tSVaFSPDG~~LaS~sWD~s 104 (574)
++|..+|.+.+|++++-|+-
T Consensus 294 rsih~hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGLDRY 313 (412)
T ss_pred ceEEEcCCCceEEeecccee
Confidence 99999999999999986653
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.01 E-value=0.013 Score=63.36 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=61.5
Q ss_pred CccCCCCEEE-EEeCCC--cEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCc--EEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLA-SISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LA-SGS~DG--tVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGt--VrLWDl~~~~~ll~ 75 (574)
.|+|||++|+ +...++ .|.+||+.++.. ..+..+.... ....|+|||+.++++...++. |++||+.+......
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~-~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAID-TEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCc-CCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 3899999877 444454 688889987765 3444444333 444899999887777655554 66667755432221
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
...+ ......+|+|||+.|+...
T Consensus 327 t~~~--~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 327 TFVG--NYNARPRLSADGKTLVMVH 349 (430)
T ss_pred ecCC--CCccceEECCCCCEEEEEE
Confidence 2222 2334578999999988765
No 237
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.95 E-value=0.0021 Score=58.30 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=37.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 530 EILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 530 e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
+-|-++..|-++|..-|.++...+.+|++||.+||-||+.||++|
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777788888999999999999999999999875
No 238
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.93 E-value=0.0013 Score=72.94 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=59.8
Q ss_pred eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEEecC
Q 008196 29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKAVSSLCWQR 103 (574)
Q Consensus 29 l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSP--DG~~LaS~sWD~ 103 (574)
...+.+|.+-| .||.|+.+| .+|++|++|-.+.|||.-..+.+...-.+|.+-|+|+.|-| +++.++++..|.
T Consensus 43 E~eL~GH~GCV-N~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 43 EAELTGHTGCV-NCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhhcccccee-cceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 34667888777 999999999 77999999999999999765556666789999999999987 456777776553
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.0052 Score=68.62 Aligned_cols=95 Identities=14% Similarity=0.223 Sum_probs=71.3
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCC------C----CeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCc
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPN------E----QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~------~----~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ 72 (574)
++...+||+|+.||.|..||......+..+.... + .-++.|.|+-+|-+ +++|..+|.|.|||++...+
T Consensus 184 n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 184 NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred cCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEEcccCCc
Confidence 3445689999999999999998877666555221 1 12488899998855 99999999999999988777
Q ss_pred eeEEeccCCCCeEEEEEcCC--CCEEEE
Q 008196 73 KVSWLKQHSAPTAGISFSSD--DKAVSS 98 (574)
Q Consensus 73 ll~tl~gH~~~VtSVaFSPD--G~~LaS 98 (574)
++..-.+..-+|..+.|.+. ...|++
T Consensus 263 l~~kdh~~e~pi~~l~~~~~~~q~~v~S 290 (703)
T KOG2321|consen 263 LLVKDHGYELPIKKLDWQDTDQQNKVVS 290 (703)
T ss_pred eeecccCCccceeeecccccCCCceEEe
Confidence 76444555567999999765 455665
No 240
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.91 E-value=0.0046 Score=69.17 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=54.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEe
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl 77 (574)
++|+.+.|+.||.||.|++||...+... +.... -+...++|+|+| .+++.|+..|.+.+||+.-.....+.+
T Consensus 267 ~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~-~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 267 RSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAE-FIPTLIAWHPDG-AIFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred cCcccceEEEEecCCeEEEEEcCCCeee--eeeec-ccceEEEEcCCC-cEEEEEcCCceEEEEEeecCccceeec
Confidence 6899999999999999999999766433 22222 333777999998 779999999999999995433333333
No 241
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.0042 Score=73.25 Aligned_cols=97 Identities=11% Similarity=0.136 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC--ceeEEeccCCCC-
Q 008196 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAP- 83 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~--~ll~tl~gH~~~- 83 (574)
.+|++++.-..|+|||+....++..+-...+..++.+.-+-....+|+.|..||.|++||.+... ..+...+.|.+.
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 35555555778999999888888777766555545554333333679999999999999995432 356677889888
Q ss_pred -eEEEEEcCCCCE-EEEEEecC
Q 008196 84 -TAGISFSSDDKA-VSSLCWQR 103 (574)
Q Consensus 84 -VtSVaFSPDG~~-LaS~sWD~ 103 (574)
|..+.+.+.|-. |++++-++
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred cceeEEeecCCCcceeeeccCC
Confidence 999999987765 88877443
No 242
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.00092 Score=74.64 Aligned_cols=101 Identities=12% Similarity=0.108 Sum_probs=81.9
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
.|+|...+|+.+... .|+|||+..+..+..+...- ..+..++++|.|.+ |+.|+.|+.+..||+.-....++.+.-|
T Consensus 573 ~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~-kwiS~msihp~GDn-li~gs~d~k~~WfDldlsskPyk~lr~H 649 (733)
T KOG0650|consen 573 KFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGS-KWISSMSIHPNGDN-LILGSYDKKMCWFDLDLSSKPYKTLRLH 649 (733)
T ss_pred EecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCC-eeeeeeeecCCCCe-EEEecCCCeeEEEEcccCcchhHHhhhh
Confidence 478888888888654 69999998877777766444 34488899999877 8889999999999996545566778899
Q ss_pred CCCeEEEEEcCCCCEEEEEEecCC
Q 008196 81 SAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
...|++|+|++.-..+++++-|..
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCc
Confidence 999999999998888888885544
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0065 Score=63.36 Aligned_cols=105 Identities=16% Similarity=0.144 Sum_probs=79.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCce--eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC-CceeEEec
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLK 78 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~--l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~-~~ll~tl~ 78 (574)
|+.-+..++++..+|.+.+-+...... +..++.|.-..+.+ .|+.....++.+||+|+.+..||++-. .......+
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta-~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k 207 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTA-KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK 207 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeee-ecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence 556677889999999999777655544 34777887777555 898877789999999999999999732 22333356
Q ss_pred cCCCCeEEEEEc-CCCCEEEEEEecCCcCE
Q 008196 79 QHSAPTAGISFS-SDDKAVSSLCWQRAKPV 107 (574)
Q Consensus 79 gH~~~VtSVaFS-PDG~~LaS~sWD~sg~v 107 (574)
-|...|.+|.-+ |.+.+|+++++|....+
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRV 237 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceee
Confidence 789999998877 56789999998865443
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0087 Score=66.62 Aligned_cols=92 Identities=15% Similarity=0.271 Sum_probs=65.2
Q ss_pred CccCCCCEEEE--EeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCC---CcEEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLAS--ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD---GTLHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LAS--GS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~D---GtVrLWDl~~~~~ll~ 75 (574)
.|+++|+.++. |=+-..|-|+|+ .|..+..|. .+.- .++-|+|.|+. |+-+|.+ |.|-|||+... .++.
T Consensus 277 ~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~--egpR-N~~~fnp~g~i-i~lAGFGNL~G~mEvwDv~n~-K~i~ 350 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP--EGPR-NTAFFNPHGNI-ILLAGFGNLPGDMEVWDVPNR-KLIA 350 (566)
T ss_pred EECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC--CCCc-cceEECCCCCE-EEEeecCCCCCceEEEeccch-hhcc
Confidence 38899986554 447888999999 577776665 3333 45589999954 5555554 88999999774 3443
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.+..-. .+-+.|+|||++|+|+.
T Consensus 351 ~~~a~~--tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 351 KFKAAN--TTVFEWSPDGEYFLTAT 373 (566)
T ss_pred ccccCC--ceEEEEcCCCcEEEEEe
Confidence 444433 35579999999999965
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0025 Score=70.71 Aligned_cols=85 Identities=18% Similarity=0.325 Sum_probs=60.1
Q ss_pred CccCCCCEEEEEe---CCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEe-----CCCcEEEEeCCCCCc
Q 008196 1 MYNCKDEHLASIS---LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----DDGTLHLWDTTGRSP 72 (574)
Q Consensus 1 ~FSpDG~~LASGS---~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS-----~DGtVrLWDl~~~~~ 72 (574)
.|||.|++|+-++ .-|.|-|||+.+.+++..+..... ..+.|+|||.+++.+.. .|+-++||++.+. .
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t---t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~-~ 393 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT---TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS-L 393 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc---eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc-e
Confidence 3899999999887 578899999999888888885543 23499999977444333 3789999999884 2
Q ss_pred eeEEeccCCCCeEEEEEcC
Q 008196 73 KVSWLKQHSAPTAGISFSS 91 (574)
Q Consensus 73 ll~tl~gH~~~VtSVaFSP 91 (574)
+. ........+.++|-|
T Consensus 394 l~--~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 394 LH--EKMFKSELLQVEWRP 410 (566)
T ss_pred ee--hhhhhHhHhheeeee
Confidence 21 111222466677765
No 246
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.011 Score=63.63 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=71.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCC--CCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC-ce-eEEe
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PK-VSWL 77 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~--~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~-~l-l~tl 77 (574)
|+....++++|..+++|++.|+.+.+.+..+.... +.| +.+..+|.. .++++.+.++.|.+||.+... +. ..-+
T Consensus 113 F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~V-Y~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 113 FDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDV-YHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred EccCCeeEecCCCcceeEeeecccceeeeeecccCcccce-eecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeee
Confidence 66677899999999999999999998888877332 356 788999985 679999999999999995432 21 2123
Q ss_pred ccCCCCeEEEEEcCCCCEEEE
Q 008196 78 KQHSAPTAGISFSSDDKAVSS 98 (574)
Q Consensus 78 ~gH~~~VtSVaFSPDG~~LaS 98 (574)
.........+-|+|..-.|+.
T Consensus 191 AN~~~~F~t~~F~P~~P~Li~ 211 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPETPALIL 211 (609)
T ss_pred cCCCccceeeeecCCCceeEE
Confidence 334445788999987655544
No 247
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.62 E-value=0.02 Score=68.60 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=44.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc-------eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC
Q 008196 4 CKDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (574)
Q Consensus 4 pDG~~LASGS~DGtVrIWDl~Tg~-------~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~ 68 (574)
+++.++++|+.||+|+|||+..-. +..++.. .+..+.++...+.+.. +|.++.||.|++.++.
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~-~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQ-FAVSTKDGSVRVLRID 1128 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCe-EEEEcCCCeEEEEEcc
Confidence 445799999999999999986421 1122222 2333377778888755 7888999999999884
No 248
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.60 E-value=0.02 Score=61.19 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=63.7
Q ss_pred ccCCC-CEEEEEeCCCcEEEEECCCC----ce--------eEEecCCCCCeEEEEEEccCCCeEEEEEeC-CCcEEEEeC
Q 008196 2 YNCKD-EHLASISLSGDLILHNLASG----AK--------AAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDT 67 (574)
Q Consensus 2 FSpDG-~~LASGS~DGtVrIWDl~Tg----~~--------l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~-DGtVrLWDl 67 (574)
|-|.+ .-|+.|+..| |+||....- .. ...+++.....+..|+|.+||.. +++++. |..|.|||+
T Consensus 148 wRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~-l~tAS~gsssi~iWdp 225 (445)
T KOG2139|consen 148 WRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTI-LVTASFGSSSIMIWDP 225 (445)
T ss_pred eccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCE-EeecccCcceEEEEcC
Confidence 34443 3567776554 999987531 11 11223323345588999999955 666654 678999999
Q ss_pred CCCC-ceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcC
Q 008196 68 TGRS-PKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 68 ~~~~-~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
.+.. ..+. ..+ ...+.-+.|||||.+|+.+..|..-.
T Consensus 226 dtg~~~pL~-~~g-lgg~slLkwSPdgd~lfaAt~davfr 263 (445)
T KOG2139|consen 226 DTGQKIPLI-PKG-LGGFSLLKWSPDGDVLFAATCDAVFR 263 (445)
T ss_pred CCCCccccc-ccC-CCceeeEEEcCCCCEEEEecccceee
Confidence 6532 2221 122 34588899999999999977665433
No 249
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.59 E-value=0.004 Score=66.81 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=53.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~-gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~ 70 (574)
|++|+++|+++..|..|+|-.+.....+..|- ||+..| ..++.-++ +.|+++|.|++|++||+...
T Consensus 159 vS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFV-S~isl~~~--~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 159 VSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFV-STISLTDN--YLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred ecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhe-eeeeeccC--ceeeecCCCCcEEEEecccC
Confidence 78999999999999999998886655566665 466555 77787765 56999999999999999664
No 250
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.58 E-value=0.013 Score=69.35 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=70.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc---eeEEecCCCCC--eEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC-CceeEEec
Q 008196 5 KDEHLASISLSGDLILHNLASGA---KAAELKDPNEQ--VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLK 78 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~---~l~t~~gh~~~--Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~-~~ll~tl~ 78 (574)
.|+.|+.|..||.|++||.+... .+...+.|... | ..+.+.+.|-.-|++|+.||.|++||++.. ........
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~I-v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPI-VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccc-eeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence 47899999999999999997543 46777777755 5 455888866444999999999999999762 11122223
Q ss_pred cCC---CCeEEEEEcCCCCEEEEEE
Q 008196 79 QHS---APTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 79 gH~---~~VtSVaFSPDG~~LaS~s 100 (574)
.|- ..++++..+++...|++++
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecC
Confidence 332 2489999999999999876
No 251
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.54 E-value=0.007 Score=39.31 Aligned_cols=38 Identities=34% Similarity=0.601 Sum_probs=30.7
Q ss_pred ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEe
Q 008196 27 AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (574)
Q Consensus 27 ~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWD 66 (574)
+.+..+..|...+ .+++|.+.+ .++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i-~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPV-TSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCce-eEEEECCCC-CEEEEecCCCeEEEcC
Confidence 4456666666666 888999987 6799999999999996
No 252
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=96.52 E-value=0.0047 Score=71.35 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=77.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEE
Q 008196 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (574)
Q Consensus 8 ~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSV 87 (574)
+.+++-.+..+++|++.+|..++.+.+|-..+ .+|.++|.+..+..+++.||...|||+....+...+..+|.. +..-
T Consensus 367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~-yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k-l~d~ 444 (1113)
T KOG0644|consen 367 IVVTARNDHRLCVWNLYTGQLLHNLMGHSDEV-YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK-LVDG 444 (1113)
T ss_pred cceeeeeeeEeeeeecccchhhhhhcccccce-eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce-eecc
Confidence 44445567789999999999999999888777 888999998888889999999999999654455445677764 5566
Q ss_pred EEcCCCCEEEEEEecCCcCEEEec
Q 008196 88 SFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 88 aFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.||+||..++.. |..+.+++..
T Consensus 445 kFSqdgts~~ls--d~hgql~i~g 466 (1113)
T KOG0644|consen 445 KFSQDGTSIALS--DDHGQLYILG 466 (1113)
T ss_pred ccCCCCceEecC--CCCCceEEec
Confidence 899999887543 5556666554
No 253
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.51 E-value=0.0025 Score=65.44 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=57.5
Q ss_pred EEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEEecCCcCEEEec
Q 008196 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 40 vs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSP-DG~~LaS~sWD~sg~viv~e 111 (574)
+.+++-+|...+++++|+.||.|-+||.+...-....+..|+.+|+-|-|+| ++..|++++ .++.++.|+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s--edGslw~wd 252 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS--EDGSLWHWD 252 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec--CCCcEEEEc
Confidence 4788889987799999999999999999765555667899999999999996 567888887 446666665
No 254
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.51 E-value=0.0078 Score=63.35 Aligned_cols=103 Identities=8% Similarity=0.056 Sum_probs=77.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCC-Cce--eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce---eE
Q 008196 2 YNCKDEHLASISLSGDLILHNLAS-GAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---VS 75 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~T-g~~--l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l---l~ 75 (574)
|++..+.|++|+.|..-+||.... ++. .-.+..++... .||.|+|.. +.+++|+..+.|.||=+.....- ..
T Consensus 63 Wap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAA-t~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKh 140 (361)
T KOG1523|consen 63 WAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAA-TCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKH 140 (361)
T ss_pred ecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccce-eeEeecCcC-ceEEeccCccEEEEEEEecccceehhhh
Confidence 788999999999999999999943 333 33444466666 888999997 55999999999999988543211 11
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEEecCCcC
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
.-+.+...|.+++|+|++-.|+.++-|..-+
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCccee
Confidence 2345677899999999999998888665433
No 255
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=96.51 E-value=0.012 Score=66.61 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEECC---CCc-----eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEec
Q 008196 7 EHLASISLSGDLILHNLA---SGA-----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~---Tg~-----~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~ 78 (574)
+.++.|..+|.|..-+.. .+. .+..+..|.+.+ +++.++|.+..++.++| |.+|+||........+.++.
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v-~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV-YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce-EeeecCCCccceeeeec-cceeEeccccCCCCcchhhh
Confidence 478889999998874432 222 122444556666 88899999977777777 99999999863334455778
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 79 QHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.+.+.|++++|||--..++... |.+|.+.+|+
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~-d~~G~l~iWD 470 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATV-DGDGNLDIWD 470 (555)
T ss_pred hccceeeeeEEcCcCceEEEEE-cCCCceehhh
Confidence 8888899999999876665544 5566666665
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.47 E-value=0.059 Score=56.98 Aligned_cols=105 Identities=11% Similarity=0.142 Sum_probs=68.9
Q ss_pred CccCCCCEEEEEe-CCCcEEEEECC--CCce--eEEecC----CCCC-eEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC
Q 008196 1 MYNCKDEHLASIS-LSGDLILHNLA--SGAK--AAELKD----PNEQ-VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (574)
Q Consensus 1 ~FSpDG~~LASGS-~DGtVrIWDl~--Tg~~--l~t~~g----h~~~-Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~ 70 (574)
+|++||++++..+ .+++|.++++. ++.. +..+.. ..+. ....|+++|||+++.++.-.++.|.+|++...
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 4899999887665 58889999997 4432 222221 1221 33777999999888888888999999999322
Q ss_pred --Cc-eeEEeccCCCCeEEEEEcCCCCEEEEEEecCCc
Q 008196 71 --SP-KVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAK 105 (574)
Q Consensus 71 --~~-ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg 105 (574)
.. .+..+.......+.+.|+|+|++|+++..+...
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 22 222333334457999999999999998754433
No 257
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=0.027 Score=63.19 Aligned_cols=107 Identities=18% Similarity=0.294 Sum_probs=76.9
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce--e---EEeccCCCC
Q 008196 9 LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--V---SWLKQHSAP 83 (574)
Q Consensus 9 LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l--l---~tl~gH~~~ 83 (574)
|+.++....|.-.|++.|..+..|....+.+ .+|..++.. .||++|+.||.|.+||.+....+ + .....|...
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~l-N~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGEL-NVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccc-eeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence 5555566679999999999999988666666 777999986 88999999999999999653322 1 112233333
Q ss_pred -----eEEEEEcCCCCEEEEEEecCCcCEEEeccCCCccee
Q 008196 84 -----TAGISFSSDDKAVSSLCWQRAKPVFIDETTCKAETA 119 (574)
Q Consensus 84 -----VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~a 119 (574)
|+++.|+-+|-.++.+. ..|.+++++.....+..
T Consensus 226 ~~~~svTal~F~d~gL~~aVGt--s~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGT--STGSVLIYDLRASKPLL 264 (703)
T ss_pred cccCcceEEEecCCceeEEeec--cCCcEEEEEcccCCcee
Confidence 99999998888887765 56777776654444443
No 258
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.46 E-value=0.01 Score=67.68 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=75.6
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeE-EecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce----eEE
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAA-ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK----VSW 76 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~-t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l----l~t 76 (574)
++..++||+-|+.-|.|.+|+...++... ...+.++.+ .++..+++. +++|.|+..|.|.++.+....+. +..
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~-~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGIT-CVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceE-EEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 45678899999999999999997665432 222333333 454788885 88999999999999998543222 111
Q ss_pred e-ccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 77 L-KQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 77 l-~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
+ +.|...|+|++|++|+..++++ |..|++....
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysG--D~~Gkv~~~~ 152 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSG--DSQGKVVLTE 152 (726)
T ss_pred ccccCCceEEEEEecccccEEeec--CCCceEEEEE
Confidence 1 2367889999999999999887 5666655443
No 259
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.0063 Score=65.27 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=67.4
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t-~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
-|+|++|++|..-+.+..+|++.++.... +++..+.+ +.|..+|.+ .+|++||.|..|+|+|+.++..+...+. .
T Consensus 256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi-rsih~hp~~-~~las~GLDRyvRIhD~ktrkll~kvYv--K 331 (412)
T KOG3881|consen 256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI-RSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHKVYV--K 331 (412)
T ss_pred cCCCcEEEEecccchhheecccCceeeccccCCccCCc-ceEEEcCCC-ceEEeeccceeEEEeecccchhhhhhhh--h
Confidence 36899999999999999999999988766 77888888 788999987 7799999999999999987544332221 2
Q ss_pred CCeEEEEEcCC
Q 008196 82 APTAGISFSSD 92 (574)
Q Consensus 82 ~~VtSVaFSPD 92 (574)
..+++|-+.++
T Consensus 332 s~lt~il~~~~ 342 (412)
T KOG3881|consen 332 SRLTFILLRDD 342 (412)
T ss_pred ccccEEEecCC
Confidence 34566666543
No 260
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=0.0014 Score=71.71 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=59.3
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~ 69 (574)
|.|..+|+++|+.-|.|.||+-.+++.+.-+.+-+. |+.||.=+|.- .+||++|-|.-||||-..+
T Consensus 402 fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~-PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 402 FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHL-PVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCC-chhhccCCccceeeecCCc
Confidence 778899999999999999999999999988887766 77999989986 6799999999999998844
No 261
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=96.25 E-value=0.012 Score=52.78 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=36.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 532 LRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 532 lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
|-+|.+|-+++..-+..+...+.+|++||-+||-||+.||.+|
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 4456667777777788889999999999999999999999986
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.22 E-value=0.018 Score=65.78 Aligned_cols=96 Identities=18% Similarity=0.280 Sum_probs=72.5
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCce---------------eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEe
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAK---------------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~---------------l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWD 66 (574)
|+.+..|||+|+.||.++|..+.+... -.++.+|...| ..+.|+....+ |.+...+|-|.+|-
T Consensus 22 WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV-~vvTWNe~~QK-LTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 22 WNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASV-MVVTWNENNQK-LTTSDTSGLIIVWM 99 (1189)
T ss_pred EcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceE-EEEEecccccc-ccccCCCceEEEEe
Confidence 778889999999999999998865321 13556888777 78899988744 89999999999999
Q ss_pred C-CCCCceeEEeccCCCCeEEEEEcCCCCEEEEE
Q 008196 67 T-TGRSPKVSWLKQHSAPTAGISFSSDDKAVSSL 99 (574)
Q Consensus 67 l-~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~ 99 (574)
+ .+.......-...+..|.+++|+-||..|+..
T Consensus 100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIv 133 (1189)
T KOG2041|consen 100 LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIV 133 (1189)
T ss_pred eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEE
Confidence 8 44322221223355679999999999888763
No 263
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.18 E-value=0.039 Score=60.76 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=67.1
Q ss_pred CccCCCCEEEEEe---CC-CcEEEEECCCCcee--EEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC--CCCCc
Q 008196 1 MYNCKDEHLASIS---LS-GDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGRSP 72 (574)
Q Consensus 1 ~FSpDG~~LASGS---~D-GtVrIWDl~Tg~~l--~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl--~~~~~ 72 (574)
.|++++..++.-. .. ..|.++|+.+++.. ..+.++.... +|+|||++++++...|+...||-+ .+..
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P----~fspDG~~l~f~~~rdg~~~iy~~dl~~~~- 273 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAP----AFSPDGSKLAFSSSRDGSPDIYLMDLDGKN- 273 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCc----cCCCCCCEEEEEECCCCCccEEEEcCCCCc-
Confidence 4788888655543 23 56999999988654 4445555555 899999999999999998777644 4432
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcC
Q 008196 73 KVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 73 ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
...+..-.+.-..-.|+|||++|+-.+ |+.+.
T Consensus 274 -~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~ 305 (425)
T COG0823 274 -LPRLTNGFGINTSPSWSPDGSKIVFTS-DRGGR 305 (425)
T ss_pred -ceecccCCccccCccCCCCCCEEEEEe-CCCCC
Confidence 222333222233667899999999876 55444
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.05 E-value=0.11 Score=56.85 Aligned_cols=93 Identities=8% Similarity=0.041 Sum_probs=58.3
Q ss_pred ccCCCCEEEEE-eC--CCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCc--EEEEeCCCCCceeEE
Q 008196 2 YNCKDEHLASI-SL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVSW 76 (574)
Q Consensus 2 FSpDG~~LASG-S~--DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGt--VrLWDl~~~~~ll~t 76 (574)
|+|||+.|+.. +. +..|.++|+..+.. ..+..+.... ....|+|||++++++....+. |.++|+.+......+
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d-~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGID-VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCcc-CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 89999866643 33 45688889877764 4454343322 223899999888888766665 555666554332112
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEE
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
..+. ....|+|||+.|+...
T Consensus 318 ~~g~----~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 318 FHGK----NNSSVSTYKNYIVYSS 337 (419)
T ss_pred cCCC----cCceECCCCCEEEEEE
Confidence 2222 1248999999998765
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.89 E-value=0.11 Score=58.23 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=73.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCC
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~-gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~ 83 (574)
|-..|+-|...|.|.+|+...|+.-+.+. +.+...+.++.++.+- ..|.+++.|+.|.+|+.... .......+-...
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEK-VIIRIWKEQKPL 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccc-eeeeeeccCCCc
Confidence 44578888899999999999999888777 3343444777777776 44999999999999999773 334445555667
Q ss_pred eEEEEEcCCCCEEEEEE
Q 008196 84 TAGISFSSDDKAVSSLC 100 (574)
Q Consensus 84 VtSVaFSPDG~~LaS~s 100 (574)
+.++|++|||..+++++
T Consensus 147 ~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS 163 (541)
T ss_pred cceEEEcCCCCEEEecc
Confidence 99999999999999743
No 266
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.71 E-value=0.072 Score=55.33 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=65.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCC-ce-eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee----E
Q 008196 2 YNCKDEHLASISLSGDLILHNLASG-AK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV----S 75 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg-~~-l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll----~ 75 (574)
+++|++++++.+....|..|.+... +. +.+....+..--.+..|+... ..+|++.+||++.|||++...... .
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccccchhhhcc
Confidence 6789999999999999999999653 22 332333333322455899886 569999999999999996543322 2
Q ss_pred EeccCCCCeEEEEEcCCC
Q 008196 76 WLKQHSAPTAGISFSSDD 93 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG 93 (574)
+...|.+.|+.+.|++-|
T Consensus 245 trp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred cCCCCCCceEEEEecCCC
Confidence 234588899999999744
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.70 E-value=0.024 Score=60.43 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=63.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCC----ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC--CceeE
Q 008196 2 YNCKDEHLASISLSGDLILHNLASG----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPKVS 75 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg----~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~--~~ll~ 75 (574)
|.-.++++..|+.+|.|.+.|++.+ ....+.-.|...+ .+|..-....++|...+.+|+|++||++-. ..-+.
T Consensus 260 f~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv-tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~ 338 (425)
T KOG2695|consen 260 FAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV-TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM 338 (425)
T ss_pred hcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch-hhhhhhccccceEeeccCcCceeEeeehhhhccccee
Confidence 5556889999999999999999764 1122222355455 565544422355778889999999999432 22367
Q ss_pred EeccCCCCeEEEEEc--CCCCEEEEEE
Q 008196 76 WLKQHSAPTAGISFS--SDDKAVSSLC 100 (574)
Q Consensus 76 tl~gH~~~VtSVaFS--PDG~~LaS~s 100 (574)
++.||...-.-+-++ +....|++++
T Consensus 339 qYeGHvN~~a~l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 339 QYEGHVNLSAYLPAHVKEEEGSIFSVG 365 (425)
T ss_pred eeecccccccccccccccccceEEEcc
Confidence 788987665444443 4445555543
No 268
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.63 E-value=0.069 Score=60.05 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=51.7
Q ss_pred CCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 35 h~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
....+ .|++++|+.++ ++.||.||.|.+||.... +..+..+.-..+.++|+|+|.++++++ ..|.+.+.+
T Consensus 258 L~s~v-~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s--~qGelQ~FD 327 (545)
T PF11768_consen 258 LPSQV-ICCARSPSEDK-LVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGS--EQGELQCFD 327 (545)
T ss_pred cCCcc-eEEecCcccce-EEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEc--CCceEEEEE
Confidence 34455 56699999755 899999999999999664 222334455688999999999999886 446655555
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.045 Score=61.26 Aligned_cols=94 Identities=11% Similarity=0.171 Sum_probs=66.3
Q ss_pred ccCCCCEEEEEeC-----------CCcEEEEECCCCceeEEecCC--CCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC
Q 008196 2 YNCKDEHLASISL-----------SGDLILHNLASGAKAAELKDP--NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (574)
Q Consensus 2 FSpDG~~LASGS~-----------DGtVrIWDl~Tg~~l~t~~gh--~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~ 68 (574)
|||+.+||+|-+- ...|+|||+.+|...+.|... ...++....||.|+ +++|.-.. ..|.||+..
T Consensus 257 fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 257 FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETP 334 (698)
T ss_pred cCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecC
Confidence 8999999999762 256999999999998888763 33445667999998 54766544 689999986
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCEEEE
Q 008196 69 GRSPKVSWLKQHSAPTAGISFSSDDKAVSS 98 (574)
Q Consensus 69 ~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS 98 (574)
... ++..-.-.-..|....|+|.+..|+-
T Consensus 335 sf~-lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 335 SFM-LLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred cee-eecccccCCccccCcccCCCcceEEE
Confidence 522 11111123346888999999777753
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.52 E-value=0.19 Score=53.72 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=67.1
Q ss_pred CccCCCCEEEEEeC-CCcEEEEECCCCceeE----EecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeE
Q 008196 1 MYNCKDEHLASISL-SGDLILHNLASGAKAA----ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LASGS~-DGtVrIWDl~Tg~~l~----t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~ 75 (574)
.|.|++++|++.+. --.|.+|++..|.... .++ ..... +.|.|+|+++...+.+-.+++|-+|++......+.
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GP-RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGP-RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCc-ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 37899999998873 3369999998776522 222 23344 77899999977666777899999999965322222
Q ss_pred EeccC---------CCCeEEEEEcCCCCEEEEE
Q 008196 76 WLKQH---------SAPTAGISFSSDDKAVSSL 99 (574)
Q Consensus 76 tl~gH---------~~~VtSVaFSPDG~~LaS~ 99 (574)
.++.+ ..+...|..++||++|..+
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas 261 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS 261 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence 22221 2346788889999999874
No 271
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=95.52 E-value=0.042 Score=60.65 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=74.1
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEEccCC-CeEEEEEeCCCcEEEEeCC--CCCceeEEe
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTT--GRSPKVSWL 77 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~-gh~~~Vvs~LafSPdG-r~LLaSgS~DGtVrLWDl~--~~~~ll~tl 77 (574)
|+..|..|++|+.|.+|.+||-..++.+..|. +|...++.. .|.|.. ..=|++++.||.|++=.+. +.......+
T Consensus 150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQa-KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 150 FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQA-KFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred ecccCceeeccCccceEEeehhhccCcccccccccccchhhh-hccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 88899999999999999999998887766665 566667555 677742 3448999999999998772 222224456
Q ss_pred ccCCCCeEEEEEcCCCC-EEEEEEec
Q 008196 78 KQHSAPTAGISFSSDDK-AVSSLCWQ 102 (574)
Q Consensus 78 ~gH~~~VtSVaFSPDG~-~LaS~sWD 102 (574)
..|.++|.-++.-|+.. .|.+++-|
T Consensus 229 ~~h~g~vhklav~p~sp~~f~S~geD 254 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSPKPFLSCGED 254 (559)
T ss_pred ccccCccceeeecCCCCCcccccccc
Confidence 78999999999887754 44455433
No 272
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.47 E-value=0.028 Score=59.89 Aligned_cols=84 Identities=11% Similarity=0.224 Sum_probs=57.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce---eEEecCCCCCeEEE-EEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEec--
Q 008196 5 KDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRV-LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-- 78 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~---l~t~~gh~~~Vvs~-LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~-- 78 (574)
++.+|++.+.+|.|++||++--++ +.++.+|-+..... +-..+. +.+++++|+|+..+||.++... ++.++.
T Consensus 310 s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~gh-Ll~tipf~ 387 (425)
T KOG2695|consen 310 SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGH-LLCTIPFP 387 (425)
T ss_pred ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc-cceEEEccCeeEEEEEecccCc-eeeccCCC
Confidence 577899999999999999986666 88888886554111 123444 3568899999999999997643 332322
Q ss_pred --cCCCCeEEEEEc
Q 008196 79 --QHSAPTAGISFS 90 (574)
Q Consensus 79 --gH~~~VtSVaFS 90 (574)
.-...+.+++|.
T Consensus 388 ~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 388 YSASEVDIPSVAFD 401 (425)
T ss_pred Cccccccccceehh
Confidence 122246677774
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.42 E-value=0.44 Score=51.43 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=65.1
Q ss_pred ccC-CCCEEEEEeCCCcEEEEECCC-----CceeEEecCC-------CCCeEEEEEEccCCCeEEEEEe---------CC
Q 008196 2 YNC-KDEHLASISLSGDLILHNLAS-----GAKAAELKDP-------NEQVLRVLDYSRNSRHLLVTAG---------DD 59 (574)
Q Consensus 2 FSp-DG~~LASGS~DGtVrIWDl~T-----g~~l~t~~gh-------~~~Vvs~LafSPdGr~LLaSgS---------~D 59 (574)
|.+ ||+++..... |.|.+.|+.. ...+..+... .+.+ ..++++++++++++... ..
T Consensus 201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~-q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW-QQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc-eeEEEcCCCCEEEEEecCCccccccCCC
Confidence 344 7777776655 9999999633 2222222211 1122 34799999977666442 12
Q ss_pred CcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCC-EEEEEEecCCcCEEEe
Q 008196 60 GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-AVSSLCWQRAKPVFID 110 (574)
Q Consensus 60 GtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~-~LaS~sWD~sg~viv~ 110 (574)
+.|.++|..+.........++ .++.|+|+||++ +|++..+......+++
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred CEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 579999997754443333443 689999999999 8887765433333444
No 274
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.047 Score=59.14 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=66.0
Q ss_pred ccCCCC-EEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEecc-
Q 008196 2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ- 79 (574)
Q Consensus 2 FSpDG~-~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~g- 79 (574)
|+|..+ ++..++.+..|+|.|+++..++..+..+ ..++.| +|.-|..++|..|-..|.|.|||++...-.+..+.+
T Consensus 201 fSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC-~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~ 278 (463)
T KOG1645|consen 201 FSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSC-CWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVAN 278 (463)
T ss_pred cCccccceeeeeccCceEEEEecccceeeeheecc-CCceee-eeccCCcceeEEeccCceEEEEEccCCCchHhhhhhh
Confidence 677777 7889999999999999999888888877 567577 999999999999999999999999543322222332
Q ss_pred -CCCCeEEEEE
Q 008196 80 -HSAPTAGISF 89 (574)
Q Consensus 80 -H~~~VtSVaF 89 (574)
...+|..|+.
T Consensus 279 ~t~~pv~~i~~ 289 (463)
T KOG1645|consen 279 VTINPVHKIAP 289 (463)
T ss_pred hccCcceeecc
Confidence 2334655554
No 275
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=95.34 E-value=0.032 Score=39.56 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.9
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEEecCC
Q 008196 73 KVSWLKQHSAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 73 ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
.+..+.+|...|++|+|+|++..|++++.|..
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~ 34 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGT 34 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCE
Confidence 35678999999999999999999999996653
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=95.32 E-value=0.065 Score=57.16 Aligned_cols=100 Identities=16% Similarity=0.273 Sum_probs=72.3
Q ss_pred EEEEEeCCCcEEEEECCCC--ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeE
Q 008196 8 HLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (574)
Q Consensus 8 ~LASGS~DGtVrIWDl~Tg--~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~Vt 85 (574)
+...|...|.|.+..+... ..+.++.+|.+.+ .+++|.+.. .+|.+|..|..|.+||+.++.-....+.+|...|.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~-~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEV-TCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccce-EEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 3344555555555554332 3467888888888 888999985 77999999999999999765555667899999999
Q ss_pred EEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 86 GISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 86 SVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.+++-.--+.++++. .++.+.+|+
T Consensus 245 ~l~~~~~t~~l~S~~--edg~i~~w~ 268 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCG--EDGGIVVWN 268 (404)
T ss_pred hhhhhhhheeeeecc--CCCeEEEEe
Confidence 998877777777754 334444444
No 277
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=94.81 E-value=0.063 Score=57.87 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=64.7
Q ss_pred eCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCC
Q 008196 13 SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD 92 (574)
Q Consensus 13 S~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPD 92 (574)
+....+.+|....+.+. -+-+|-..+ ..|+|+||+ ++|+++..|..|++-.+........++.||..-|..++.-++
T Consensus 129 gD~~~~di~s~~~~~~~-~~lGhvSml-~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCE-PILGHVSML-LDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred CCceeeeeecccccCcc-hhhhhhhhh-heeeecCCC-CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 34455556665444433 334566555 777999998 669999999999998876544445567899999999998654
Q ss_pred CCEEEEEEecCCcCEEEec
Q 008196 93 DKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 93 G~~LaS~sWD~sg~viv~e 111 (574)
..|++++.| +.+.+|+
T Consensus 206 -~~LlS~sGD--~tlr~Wd 221 (390)
T KOG3914|consen 206 -YLLLSGSGD--KTLRLWD 221 (390)
T ss_pred -ceeeecCCC--CcEEEEe
Confidence 557887745 4555554
No 278
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.75 E-value=0.63 Score=49.25 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=63.8
Q ss_pred ccCCCCEEEEEeC----CCcEEEEECCCC--ce--eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce
Q 008196 2 YNCKDEHLASISL----SGDLILHNLASG--AK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (574)
Q Consensus 2 FSpDG~~LASGS~----DGtVrIWDl~Tg--~~--l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l 73 (574)
|++++++|++... ++.|..|++... .. +.......... ..|+++|+++.++++.-.+|.|.+|++.....+
T Consensus 44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p-~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l 122 (345)
T PF10282_consen 44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP-CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSL 122 (345)
T ss_dssp E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCE-EEEEECTTSSEEEEEETTTTEEEEEEECTTSEE
T ss_pred EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCc-EEEEEecCCCEEEEEEccCCeEEEEEccCCccc
Confidence 6789999998876 578999988653 32 33333223344 455899999775555556999999999653222
Q ss_pred eEE--ec-----------cCCCCeEEEEEcCCCCEEEEEE
Q 008196 74 VSW--LK-----------QHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 74 l~t--l~-----------gH~~~VtSVaFSPDG~~LaS~s 100 (574)
... .. ......+++.|+||++++++..
T Consensus 123 ~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 123 GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 111 11 1223478999999999998854
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.75 E-value=0.74 Score=49.74 Aligned_cols=88 Identities=8% Similarity=0.015 Sum_probs=64.0
Q ss_pred CcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEe---------CCCcEEEEeCCCCCceeEEecc----C--
Q 008196 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTGRSPKVSWLKQ----H-- 80 (574)
Q Consensus 16 GtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS---------~DGtVrLWDl~~~~~ll~tl~g----H-- 80 (574)
++|.|.|..+++.+.++....... .+ ++|||+.+.++.. .+..|.+||+.+..... .+.- +
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EEccCCCchhh
Confidence 899999999999998888554333 33 8999988777878 79999999997754332 2221 1
Q ss_pred -CCCeEEEEEcCCCCEEEEEEecCCcCE
Q 008196 81 -SAPTAGISFSSDDKAVSSLCWQRAKPV 107 (574)
Q Consensus 81 -~~~VtSVaFSPDG~~LaS~sWD~sg~v 107 (574)
......++++|||++|+...++....+
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEE
Confidence 112347889999999998777644443
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.74 E-value=0.29 Score=59.79 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=62.3
Q ss_pred ccCCCCE-EEEEeCCCcEEEEECCCCceeEEe-------------cCC--------CCCeEEEEEEccCCCeEEEEEeCC
Q 008196 2 YNCKDEH-LASISLSGDLILHNLASGAKAAEL-------------KDP--------NEQVLRVLDYSRNSRHLLVTAGDD 59 (574)
Q Consensus 2 FSpDG~~-LASGS~DGtVrIWDl~Tg~~l~t~-------------~gh--------~~~Vvs~LafSPdGr~LLaSgS~D 59 (574)
|+++|++ +++-..++.|++||+.++...... ..+ .... ..|+|+++| .++++-..+
T Consensus 747 vspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P-~Gvavd~dG-~LYVADs~N 824 (1057)
T PLN02919 747 LSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP-LGVLCAKDG-QIYVADSYN 824 (1057)
T ss_pred EeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC-ceeeEeCCC-cEEEEECCC
Confidence 6788884 445557899999999876532111 000 0122 466899998 578888899
Q ss_pred CcEEEEeCCCCCceeEEecc--------------CCCCeEEEEEcCCCCEEEEEE
Q 008196 60 GTLHLWDTTGRSPKVSWLKQ--------------HSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 60 GtVrLWDl~~~~~ll~tl~g--------------H~~~VtSVaFSPDG~~LaS~s 100 (574)
+.|++||..+.... .+.+ +-.....|+++++|+.+++-.
T Consensus 825 ~rIrviD~~tg~v~--tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 825 HKIKKLDPATKRVT--TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred CEEEEEECCCCeEE--EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 99999999664222 2222 122467899999998776654
No 281
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=94.69 E-value=0.28 Score=48.28 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 008196 505 FQRTLEETLDSFQKSIHEDMRNLHIE--------------ILRQFHMQETQMSNVMSSIL----ENQAELMKEIKSLRKE 566 (574)
Q Consensus 505 ~~~~~~e~l~~~~~~~~~d~~nlh~e--------------~lrqf~~~~~e~~~~~~~~~----~~~~~l~~E~~~lr~e 566 (574)
.|..|+-.|..||+.+...|++-+.+ .++.....=.||..||..-. +.-.+..+.|.+|..|
T Consensus 89 hq~alelIM~KyReq~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~kI~EM~~vM~~ai~~de~~~~~~qe~i~qL~~E 168 (181)
T PF05769_consen 89 HQSALELIMSKYREQMSQLMMASKFDDTEPYLEANEQLSKEVQSQAEKICEMAAVMRKAIELDEENSQEEQEIIAQLETE 168 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhHhHHHHHHHHHHH
Confidence 45666667888888888776544322 34444444458888885432 3345777899999999
Q ss_pred HHHHHhhC
Q 008196 567 NHQLRQLL 574 (574)
Q Consensus 567 n~~lr~~~ 574 (574)
|+.||.+|
T Consensus 169 N~~LRelL 176 (181)
T PF05769_consen 169 NKGLRELL 176 (181)
T ss_pred HHHHHHHH
Confidence 99999986
No 282
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.58 E-value=0.35 Score=53.36 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=60.8
Q ss_pred ccCCCCEEEE-EeCCCc--EEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC--CCCCceeEE
Q 008196 2 YNCKDEHLAS-ISLSGD--LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGRSPKVSW 76 (574)
Q Consensus 2 FSpDG~~LAS-GS~DGt--VrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl--~~~~~ll~t 76 (574)
|+|||++|+- ...||. |.+.|+..+. +..+....+.-..- .|+|||++++++.+..|.-.||-. .+......+
T Consensus 245 fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~P-s~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 245 FSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSP-SWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred CCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCc-cCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 8999997664 445665 5566775554 34444322222122 799999998999888888666655 443332222
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEEe
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLCW 101 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~sW 101 (574)
..+-. -.+-.|+|||++|+....
T Consensus 323 ~~~~~--~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 323 FSGGG--NSNPVWSPDGDKIVFESS 345 (425)
T ss_pred ccCCC--CcCccCCCCCCEEEEEec
Confidence 32222 237789999999998773
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=94.40 E-value=0.3 Score=54.21 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=67.5
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCC----CcEEEEeCCCCCceeEEec
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD----GTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~D----GtVrLWDl~~~~~ll~tl~ 78 (574)
++||++++.+....+|-+.|+.+|... .+.......+...+|+|+++ ++|-+--+ ..|+|||+.+.... ...
T Consensus 410 s~dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy--~vT 485 (668)
T COG4946 410 SPDGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIY--DVT 485 (668)
T ss_pred cCCCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEE--Eec
Confidence 689999999999999999999998764 34434445557779999984 47655444 46999999875433 222
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE
Q 008196 79 QHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~s 100 (574)
...+--.+-+|.||+++|.-.+
T Consensus 486 T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 486 TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCcccccCcccCCCCcEEEEEe
Confidence 2222336679999999988744
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.12 Score=57.99 Aligned_cols=105 Identities=15% Similarity=0.255 Sum_probs=63.9
Q ss_pred CCCEEEEEeCCCcEEEEECCC-------CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEe
Q 008196 5 KDEHLASISLSGDLILHNLAS-------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~T-------g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl 77 (574)
+.+-+++++.|++|++|.++. ..|.+++..|+..+ ..+.|-.+-++ ++ +.||-|++||.--...+.+..
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i-~~igfL~~lr~-i~--ScD~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPI-HDIGFLADLRS-IA--SCDGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcc-cceeeeeccce-ee--eccCcceeecccccchhHhhh
Confidence 456789999999999999863 34677888888777 77788887633 55 458999999983222222111
Q ss_pred --ccCCC--CeEEEEEcCCCCEEEEEEecCCcCEEEeccCC
Q 008196 78 --KQHSA--PTAGISFSSDDKAVSSLCWQRAKPVFIDETTC 114 (574)
Q Consensus 78 --~gH~~--~VtSVaFSPDG~~LaS~sWD~sg~viv~e~~~ 114 (574)
..|.. .|.|+. +.+...+..+|--.....+++.+.|
T Consensus 822 dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc 861 (1034)
T KOG4190|consen 822 DAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC 861 (1034)
T ss_pred cCcccCCCceeEecc-cCcchheeeeccchhhheeeecccc
Confidence 22322 244443 3344555555433334444444333
No 285
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=0.3 Score=56.85 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=62.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccC-----CCeEEEEEeCCCcEEEEeCC--CCCceeEEe
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-----SRHLLVTAGDDGTLHLWDTT--GRSPKVSWL 77 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPd-----Gr~LLaSgS~DGtVrLWDl~--~~~~ll~tl 77 (574)
+|+|+++|+.||.|.|-.+.+.+...++.-+ ..+ ..|+++|+ .++ +++||.-| +.++.-. +....+ .+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpi-ksial~Pd~~~~~sk~-fv~GG~ag-lvL~er~wlgnk~~v-~l 156 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPI-KSIALHPDFSRQQSKQ-FVSGGMAG-LVLSERNWLGNKDSV-VL 156 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecC-Ccc-eeEEeccchhhhhhhh-eeecCcce-EEEehhhhhcCccce-ee
Confidence 6999999999999999999888877766633 344 67799997 334 88898888 7777641 211111 35
Q ss_pred ccCCCCeEEEEEcCCCCEEE
Q 008196 78 KQHSAPTAGISFSSDDKAVS 97 (574)
Q Consensus 78 ~gH~~~VtSVaFSPDG~~La 97 (574)
..-.++|.+++| .|.+|+
T Consensus 157 ~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 157 SEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred ecCccceEEEEe--cCcEEE
Confidence 556778999999 456664
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.28 E-value=0.3 Score=58.92 Aligned_cols=98 Identities=11% Similarity=0.179 Sum_probs=66.9
Q ss_pred ccCCCCEEEEEeC---C---CcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeC---CCcEEEEeCCCCCc
Q 008196 2 YNCKDEHLASISL---S---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---DGTLHLWDTTGRSP 72 (574)
Q Consensus 2 FSpDG~~LASGS~---D---GtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~---DGtVrLWDl~~~~~ 72 (574)
|-.||+|+|+.+. . ..|+||+.+ |....+-. .....-.+|+|.|.| .+||+... ...|.+|.-++...
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrh 293 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRH 293 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEe
Confidence 6789999998874 3 468999995 76554444 333333667999999 66777643 45677777655332
Q ss_pred eeEEec--cCCCCeEEEEEcCCCCEEEEEEec
Q 008196 73 KVSWLK--QHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 73 ll~tl~--gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
....+. .....|..+.|+.|+..|+....|
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 222332 345579999999999999986643
No 287
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=94.26 E-value=0.45 Score=41.57 Aligned_cols=65 Identities=22% Similarity=0.337 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 510 EETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVM-----SSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 510 ~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~-----~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
++++.+-++++...|.-|--||==||..--..=-.+| ..|..++++|..|++.|.+||++||..|
T Consensus 3 ~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 3 KKKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444444432111112222 4588889999999999999999998753
No 288
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.20 E-value=0.55 Score=49.74 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=72.9
Q ss_pred ccC-CCCEEEEEeCCCc-EEEEECCCCceeEEecCCCCCe-EEEEEEccCCCeEEEE----EeCCCcEEEEeCCCCCcee
Q 008196 2 YNC-KDEHLASISLSGD-LILHNLASGAKAAELKDPNEQV-LRVLDYSRNSRHLLVT----AGDDGTLHLWDTTGRSPKV 74 (574)
Q Consensus 2 FSp-DG~~LASGS~DGt-VrIWDl~Tg~~l~t~~gh~~~V-vs~LafSPdGr~LLaS----gS~DGtVrLWDl~~~~~ll 74 (574)
.+| .+..++.+-..|+ ..+||..+++....+....+.. +-..+|++||+.|++| ....|.|-|||......++
T Consensus 12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri 91 (305)
T PF07433_consen 12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRI 91 (305)
T ss_pred eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence 356 4567777888887 6699999999887777544332 2334799999765555 2345889999998545667
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 75 SWLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
..+..|.-.-..+.+.|||+.|+.+.
T Consensus 92 ~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 92 GEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred eEecCCCcChhhEEEcCCCCEEEEEc
Confidence 77788877788899999998888854
No 289
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=94.20 E-value=0.38 Score=49.59 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 502 LQLFQRTLEETLDSFQKSIHEDMRNLH--IEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 502 ~~~~~~~~~e~l~~~~~~~~~d~~nlh--~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
+..+++++.+.+.-++..++.=...++ .+-++.+..++.|-..+-++ ..+++....+.++|++||+|||++|
T Consensus 36 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e-~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 36 LSPVRQVVGDVVSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKE-LLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888888888777665444443 34444444555555555444 2223333444458899999999875
No 290
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=94.05 E-value=0.13 Score=64.17 Aligned_cols=102 Identities=20% Similarity=0.273 Sum_probs=75.3
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEE---eCCCcEEEEeCC--CCCceeE
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA---GDDGTLHLWDTT--GRSPKVS 75 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSg---S~DGtVrLWDl~--~~~~ll~ 75 (574)
.|+.+|+.+..+..||.+.+|.+. .+.....+.|.... ...+|-. .+++++ ++++.|.+||.. ...-++
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~-~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v- 2331 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKAL-SDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLV- 2331 (2439)
T ss_pred hhcccCCceeeeccCCceeecccC-CcceeccccCCccc-cceeeee---hhhhccccCCCCCcccchhcccCccccee-
Confidence 389999999999999999999995 45555666565444 4445544 346665 467899999983 222233
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 76 WLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 76 tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
-..|...+++++|-|..+.|++++ +.|.+++++
T Consensus 2332 -~~~H~~gaT~l~~~P~~qllisgg--r~G~v~l~D 2364 (2439)
T KOG1064|consen 2332 -HTCHDGGATVLAYAPKHQLLISGG--RKGEVCLFD 2364 (2439)
T ss_pred -eeecCCCceEEEEcCcceEEEecC--CcCcEEEee
Confidence 388999999999999999999976 556666655
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=93.97 E-value=0.26 Score=57.29 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=66.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccC-----------CCeEEEEEeCCCcEEEEeCCCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-----------SRHLLVTAGDDGTLHLWDTTGR 70 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPd-----------Gr~LLaSgS~DGtVrLWDl~~~ 70 (574)
|++.| +||-|+. ..|.|-|..+-+.+..+..|...| ..|.|.|. ..-+|+++...|.|.+||....
T Consensus 23 w~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V-~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~ 99 (1062)
T KOG1912|consen 23 WSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAV-TSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA 99 (1062)
T ss_pred cCccc-eEEEecC-ceEEEEehhhhhhhhccccCccce-eEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence 44444 7888864 468888998999999999888777 66699883 2346888899999999999763
Q ss_pred CceeEEeccCCCCeEEEEEcC
Q 008196 71 SPKVSWLKQHSAPTAGISFSS 91 (574)
Q Consensus 71 ~~ll~tl~gH~~~VtSVaFSP 91 (574)
..+.++..|.++|..++|-+
T Consensus 100 -s~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 100 -SVINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred -hhhhhhcCCCcchhheeeee
Confidence 34457889999999999963
No 292
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.91 E-value=1.1 Score=47.95 Aligned_cols=110 Identities=9% Similarity=0.119 Sum_probs=70.6
Q ss_pred CccCCCCEEEEEe-CCCcEEEEECCCC-ceeEEecC-------C-CCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC
Q 008196 1 MYNCKDEHLASIS-LSGDLILHNLASG-AKAAELKD-------P-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (574)
Q Consensus 1 ~FSpDG~~LASGS-~DGtVrIWDl~Tg-~~l~t~~g-------h-~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~ 70 (574)
+|+|++++....+ .+++|.+|..... ..+..++. . .......|..++||+.|.+|--....|-+|-+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 4999999888777 5999999999763 23333331 1 12233667899999765555444457777777322
Q ss_pred Cce---eEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 71 SPK---VSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 71 ~~l---l~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
.-. +.....+...-+...|++.|++|+.+.-+.+. +.+..
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~-i~vf~ 319 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN-ITVFE 319 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc-EEEEE
Confidence 211 22333445556889999999999998755544 43433
No 293
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=93.75 E-value=0.083 Score=43.00 Aligned_cols=27 Identities=41% Similarity=0.664 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 548 SILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 548 ~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
.++.+.+.|..|+++|++||.+||.+|
T Consensus 30 ~vL~~R~~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 30 KVLLDRAALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667899999999999999999875
No 294
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=93.62 E-value=0.33 Score=57.29 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=51.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEe---------CCCcEEEEeCCC
Q 008196 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTG 69 (574)
Q Consensus 4 pDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS---------~DGtVrLWDl~~ 69 (574)
.+++++++|...|+|.+-|..+.+.++++..|.+.+ . +|.-.| .+|++|| .|..|+|||++.
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si-S--DfDv~G-NlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI-S--DFDVQG-NLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccce-e--eeeccC-CeEEEeecccccccccccchhhhhhhhh
Confidence 467899999999999999999999999999999877 3 566677 5577776 356799999954
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.19 Score=54.64 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=55.0
Q ss_pred CCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 37 ~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
+..++.|+|+|..+-|+..++.+.+|+|.|+.+. ..+..+..| ..+|+++|.-|...++-++ +..|.+++.+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaG-l~nG~VlvyD 264 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAG-LQNGMVLVYD 264 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEe-ccCceEEEEE
Confidence 3445899999998668999999999999999874 345566777 5899999998877776665 4455555544
No 296
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.46 E-value=0.62 Score=56.98 Aligned_cols=67 Identities=9% Similarity=0.165 Sum_probs=47.5
Q ss_pred ccC-CCCEEEEEeCCCcEEEEECCCCceeEEecCC---------------CCCeEEEEEEccCCCeEEEEEeCCCcEEEE
Q 008196 2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDP---------------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLW 65 (574)
Q Consensus 2 FSp-DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh---------------~~~Vvs~LafSPdGr~LLaSgS~DGtVrLW 65 (574)
|++ ++.++++...++.|++||..++... .+.+. -... ..|+|+|+++.++++-..++.|++|
T Consensus 690 ~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P-~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 690 FEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQP-SGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCc-cEEEEeCCCCEEEEEECCCCeEEEE
Confidence 456 5566777778999999999776542 22211 0122 4579999997778888889999999
Q ss_pred eCCCC
Q 008196 66 DTTGR 70 (574)
Q Consensus 66 Dl~~~ 70 (574)
|+.+.
T Consensus 768 D~~tg 772 (1057)
T PLN02919 768 DLKTG 772 (1057)
T ss_pred ECCCC
Confidence 98653
No 297
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.02 E-value=0.45 Score=40.12 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 536 HMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 536 ~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
..+|+|+. ++.++..+|.+|++.|++||+|||+
T Consensus 21 ~~Lq~e~e----eLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 21 ALLQMENE----ELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455544 3455567777888899999999885
No 298
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.01 E-value=1.1 Score=49.98 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=68.4
Q ss_pred cCCCCEEEEEeCCC-cEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 3 NCKDEHLASISLSG-DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 3 SpDG~~LASGS~DG-tVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
.-+++-++.|..|| .|-|+|..+++. ..+...-+.+ ..|..+++|+. ++.+.....+-+.|+.+....+ .-+...
T Consensus 368 ~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I-~av~vs~dGK~-~vvaNdr~el~vididngnv~~-idkS~~ 443 (668)
T COG4946 368 QVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNI-EAVKVSPDGKK-VVVANDRFELWVIDIDNGNVRL-IDKSEY 443 (668)
T ss_pred ccCCcceEEeccCCceEEEEecCCceE-EEeeCCccce-EEEEEcCCCcE-EEEEcCceEEEEEEecCCCeeE-eccccc
Confidence 34566788898999 788999977765 4445455667 66799999955 7777777888888987654332 234455
Q ss_pred CCeEEEEEcCCCCEEEE
Q 008196 82 APTAGISFSSDDKAVSS 98 (574)
Q Consensus 82 ~~VtSVaFSPDG~~LaS 98 (574)
+.|+.+.|+|++++|+-
T Consensus 444 ~lItdf~~~~nsr~iAY 460 (668)
T COG4946 444 GLITDFDWHPNSRWIAY 460 (668)
T ss_pred ceeEEEEEcCCceeEEE
Confidence 67999999999999987
No 299
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.80 E-value=0.66 Score=54.90 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=66.0
Q ss_pred CEEEEEeCCCcEEEEECCCC-ceeEEecC---CCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCC
Q 008196 7 EHLASISLSGDLILHNLASG-AKAAELKD---PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg-~~l~t~~g---h~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~ 82 (574)
+..+.|-.+..|..||.+-. ..+..-.. ..+.-+.|++-..+| + ||.|+.+|.|||||-.+.. ....+.+-..
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~-iavgs~~G~IRLyd~~g~~-AKT~lp~lG~ 619 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-Y-IAVGSNKGDIRLYDRLGKR-AKTALPGLGD 619 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-e-EEEEeCCCcEEeecccchh-hhhcCCCCCC
Confidence 35677778899999999753 22221111 123344887877777 5 9999999999999965422 2234667789
Q ss_pred CeEEEEEcCCCCEEEEEE
Q 008196 83 PTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 83 ~VtSVaFSPDG~~LaS~s 100 (574)
+|.+|+.+.||++|+..|
T Consensus 620 pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 620 PIIGIDVTADGKWILATC 637 (794)
T ss_pred CeeEEEecCCCcEEEEee
Confidence 999999999999999876
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=92.68 E-value=0.1 Score=54.07 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=50.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCce-eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC
Q 008196 6 DEHLASISLSGDLILHNLASGAK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~-l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~ 69 (574)
.+++++|+.||.|-|||.+.... +..++.|+..+ .-|-|+|....-|++++.||.+-.||..+
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i-~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI-WEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh-hheeccCCCchheeEecCCCcEEEEcCCC
Confidence 45788999999999999987644 34556777777 55599996545599999999999999875
No 301
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=92.59 E-value=0.59 Score=50.19 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=64.4
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCc-----eeEEecCCCCC-----------eEEEEEEccCCC-eEEEEEeCCCcEEE
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPNEQ-----------VLRVLDYSRNSR-HLLVTAGDDGTLHL 64 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~-----~l~t~~gh~~~-----------Vvs~LafSPdGr-~LLaSgS~DGtVrL 64 (574)
|+..|++||+|+.+|.|.++.-.... ....++.|... -+..+.|.+++. ..++....|.+|++
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl 112 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL 112 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence 77899999999999999999775432 12333333211 124558877653 23444568999999
Q ss_pred EeCCCCCce-----------------------------------eEEeccCCCCeEEEEEcCCCCEEEEE
Q 008196 65 WDTTGRSPK-----------------------------------VSWLKQHSAPTAGISFSSDDKAVSSL 99 (574)
Q Consensus 65 WDl~~~~~l-----------------------------------l~tl~gH~~~VtSVaFSPDG~~LaS~ 99 (574)
|-+..+... ...-.+|..-|.+|+++.|++.++++
T Consensus 113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 998321100 01123577779999999999999884
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.58 E-value=0.62 Score=54.37 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=61.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEcc---CCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 8 ~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSP---dGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
+||++...|.|.|||...+..+..+..|.+.+ ..++|-+ +.+++|+.-..-.+|.+|+..+++.....--+|. ..
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~-qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iL 158 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSV-QDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-IL 158 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcch-hheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ce
Confidence 68899999999999999998888888666655 6677755 5567788888889999999977544432223333 56
Q ss_pred EEEEEcC
Q 008196 85 AGISFSS 91 (574)
Q Consensus 85 tSVaFSP 91 (574)
.|+.+.|
T Consensus 159 s~f~~DP 165 (1062)
T KOG1912|consen 159 SCFRVDP 165 (1062)
T ss_pred eeeeeCC
Confidence 6777776
No 303
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=92.46 E-value=2.5 Score=38.64 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=56.5
Q ss_pred cCCC-CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCC
Q 008196 3 NCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (574)
Q Consensus 3 SpDG-~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~ 81 (574)
.-|| +.|+.|+.|..|+||+- .+.+..+... ..+ ..|+-...+ + ++-+-.+|+|-+|+-..+ +...+...
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v-~~L~~~~~~-~-F~Y~l~NGTVGvY~~~~R---lWRiKSK~ 81 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKV-TSLCSLGGG-R-FAYALANGTVGVYDRSQR---LWRIKSKN 81 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cce-EEEEEcCCC-E-EEEEecCCEEEEEeCcce---eeeeccCC
Confidence 3444 48999999999999976 3667777744 344 444444443 4 788889999999987443 21223322
Q ss_pred CCeEEEEEc---CCCCEEEEEEecC
Q 008196 82 APTAGISFS---SDDKAVSSLCWQR 103 (574)
Q Consensus 82 ~~VtSVaFS---PDG~~LaS~sWD~ 103 (574)
.+.++++. .||..-+..+|..
T Consensus 82 -~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 82 -QVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred -CeEEEEEEcCCCCCceEEEEEecC
Confidence 35666543 3444444455653
No 304
>smart00340 HALZ homeobox associated leucin zipper.
Probab=92.43 E-value=0.14 Score=38.80 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008196 553 QAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 553 ~~~l~~E~~~lr~en~~lr~~ 573 (574)
-+.|.+||++|++|.++||.+
T Consensus 14 ce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 14 CESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999975
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.21 E-value=2.8 Score=41.69 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=60.7
Q ss_pred ccCCCCEEE-EEeCCCcEEEEECCCCce----eEEe-cCCCC-CeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee
Q 008196 2 YNCKDEHLA-SISLSGDLILHNLASGAK----AAEL-KDPNE-QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (574)
Q Consensus 2 FSpDG~~LA-SGS~DGtVrIWDl~Tg~~----l~t~-~gh~~-~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll 74 (574)
|++|++.|+ +-+..+.|..+++..... ...+ ..... .....+++..+| ++.++....+.|.++|..+. ++
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~G~--~~ 217 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPDGK--LL 217 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSC--EE
T ss_pred ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCCcc--EE
Confidence 789998665 566788899999853221 1222 11122 223778999998 66777778999999999864 33
Q ss_pred EEeccCCCCeEEEEEc-CCCCEEEE
Q 008196 75 SWLKQHSAPTAGISFS-SDDKAVSS 98 (574)
Q Consensus 75 ~tl~gH~~~VtSVaFS-PDG~~LaS 98 (574)
..+.-....+++++|. ++...|+.
T Consensus 218 ~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 218 REIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred EEEcCCCCCEEEEEEECCCCCEEEE
Confidence 3333333478999994 66665554
No 306
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=92.20 E-value=1.1 Score=46.97 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=46.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCcee----EEec-CCCCCeEEEEEEccCCC-eEEEEEeCCCcEEEEeCCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKA----AELK-DPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l----~t~~-gh~~~Vvs~LafSPdGr-~LLaSgS~DGtVrLWDl~~ 69 (574)
|+.....+|++..||.+.|||++..... ..-+ .|++.+ +.+.|++.|. .||+-.-.-+.+++.|++.
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~-R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF-RVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce-EEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 6777889999999999999999764331 2222 344555 7779998552 3444444557899999965
No 307
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=92.18 E-value=0.89 Score=42.18 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 507 RTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKEN 567 (574)
Q Consensus 507 ~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en 567 (574)
.-|...+.++.++||..|..=|.+||.|+...+ ++..+++.+...++.|..-+++||+|.
T Consensus 36 ~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~-~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 36 KKLNFDIQELDKRIRSQVTSNHEDLLSQASSIE-ELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778899999999999999999998755 456699999999999999999999874
No 308
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=92.02 E-value=0.26 Score=52.83 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=68.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCce---eEEecCCC----CCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAK---AAELKDPN----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~---l~t~~gh~----~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll 74 (574)
++.|++.++++ .|=.|.+|+++--.. +..++.++ ..|++.-.|+|....+++-.+..|+|+|.|++....+-
T Consensus 172 ~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 172 VNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred ecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 56788888887 788899999974332 44445443 23556668999776777778889999999996321110
Q ss_pred --E-Eecc------------CCCCeEEEEEcCCCCEEEE------EEecC
Q 008196 75 --S-WLKQ------------HSAPTAGISFSSDDKAVSS------LCWQR 103 (574)
Q Consensus 75 --~-tl~g------------H~~~VtSVaFSPDG~~LaS------~sWD~ 103 (574)
. .+.. --..|..|.|+.+|+++++ ..||.
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~ 300 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDL 300 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEec
Confidence 0 0111 1124888999999999998 56776
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.93 E-value=0.22 Score=58.61 Aligned_cols=108 Identities=21% Similarity=0.324 Sum_probs=67.2
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEe------------------------
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG------------------------ 57 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS------------------------ 57 (574)
|+-+.++|+.|+..|.|+++++.+|........|...+ +.|.=+-||.-+|.+++
T Consensus 1109 fs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sav-T~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed 1187 (1516)
T KOG1832|consen 1109 FSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAV-TLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDED 1187 (1516)
T ss_pred eecCCceEEeeeccceEEEEEccCcccccccccccccc-ccccccCCcceeeeeccccCchHHHhccccccCcccccccc
Confidence 67788999999999999999999998877777776655 33344444433232222
Q ss_pred ----------------CCCcEEEEeCCCCCceeEEecc---CCCCeEEEEEcCCCCEEEE--EEecCCcCEEEe
Q 008196 58 ----------------DDGTLHLWDTTGRSPKVSWLKQ---HSAPTAGISFSSDDKAVSS--LCWQRAKPVFID 110 (574)
Q Consensus 58 ----------------~DGtVrLWDl~~~~~ll~tl~g---H~~~VtSVaFSPDG~~LaS--~sWD~sg~viv~ 110 (574)
....+.|||+.+..++...+.+ ....=+++.|+|+...|+= ..||...+..++
T Consensus 1188 ~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1188 KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWDVRIPEAIH 1261 (1516)
T ss_pred ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeeeeccHHHHh
Confidence 2233555555443322221221 1222367889999888775 668876664433
No 310
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=0.073 Score=59.57 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=50.2
Q ss_pred eEEecCCCCCeEEEEE-EccCCCeEEEEEeCCCcEEEEeCCC--CC----ceeEEeccCCCCeEEEEEcCCCCEEEEE
Q 008196 29 AAELKDPNEQVLRVLD-YSRNSRHLLVTAGDDGTLHLWDTTG--RS----PKVSWLKQHSAPTAGISFSSDDKAVSSL 99 (574)
Q Consensus 29 l~t~~gh~~~Vvs~La-fSPdGr~LLaSgS~DGtVrLWDl~~--~~----~ll~tl~gH~~~VtSVaFSPDG~~LaS~ 99 (574)
+..|.+|+..+ +.++ ++. ..-+++++.|++|++|.++. .+ .+..+++.|+.+|.++.|-.+.++++++
T Consensus 728 L~nf~GH~~~i-Rai~AidN--ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKI-RAIAAIDN--ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eecccCcHHHh-HHHHhccc--ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence 45667887776 4432 333 33489999999999999832 11 2345789999999999999999999884
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.73 E-value=2.8 Score=41.67 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=60.2
Q ss_pred ccCCCCEEEEEeCC--------CcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCc-
Q 008196 2 YNCKDEHLASISLS--------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP- 72 (574)
Q Consensus 2 FSpDG~~LASGS~D--------GtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~- 72 (574)
+.++|++.++.... |.|..++.. ++...... .-... ..|+|+|+++.|+++-+..+.|..||+.....
T Consensus 93 vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~p-NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 93 VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFP-NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSE-EEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred EcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Ccccc-cceEECCcchheeecccccceeEEEeccccccc
Confidence 57889977776644 557777775 44433332 22333 77899999988778888899999999843222
Q ss_pred e-----eEEeccCCCCeEEEEEcCCCCEEEEEEecCC
Q 008196 73 K-----VSWLKQHSAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 73 l-----l~tl~gH~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
. +..+.......-.+++..+|.+.+ +.|...
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v-a~~~~~ 205 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSDGNLWV-ADWGGG 205 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTTS-EEE-EEETTT
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCCCCEEE-EEcCCC
Confidence 1 111222222367899999887554 555443
No 312
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.66 E-value=0.89 Score=39.19 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=31.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 528 HIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 528 h~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+-+|+++.-.+|.-|..+++ ++++..+|++.|+.||+-|.++
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~----Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSD----RVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777776655555555 4678899999999999999875
No 313
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.60 E-value=2.1 Score=35.07 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=32.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 533 RQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 533 rqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
+.++.-.-.+..-+.+-...+.+|..||++|++|.+.||.
T Consensus 21 ~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 21 TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4466666667777777788899999999999999999985
No 314
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.57 E-value=1.4 Score=53.84 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=73.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEecC--CCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeE
Q 008196 8 HLASISLSGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (574)
Q Consensus 8 ~LASGS~DGtVrIWDl~Tg~~l~t~~g--h~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~Vt 85 (574)
.|+.+...+.|.+||+......+.++. .++.+ +.++.+|.+ .+++.|...|.+.+||++=+.+...|...|..+|.
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v-TSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~ 1242 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV-TSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIR 1242 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhhcCccccce-eEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCcccCCcc
Confidence 678888899999999987766666653 34555 777999998 56999999999999999765556666666677888
Q ss_pred EEEEcC---CCCEEEEEEecCCcCEEEe
Q 008196 86 GISFSS---DDKAVSSLCWQRAKPVFID 110 (574)
Q Consensus 86 SVaFSP---DG~~LaS~sWD~sg~viv~ 110 (574)
.|+.+| .....++++....+.+-+|
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeee
Confidence 877764 3456666654333444333
No 315
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.56 E-value=0.66 Score=49.27 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=59.5
Q ss_pred cCCCCEEEEE---------eCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce
Q 008196 3 NCKDEHLASI---------SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (574)
Q Consensus 3 SpDG~~LASG---------S~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l 73 (574)
|||+++++.. +..+.+.|||+.+++.. .+......+ ....|+|+|+.+++. .++.|.+++..+....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~-~l~~~~~~~-~~~~~sP~g~~~~~v--~~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT-PLTPPPPKL-QDAKWSPDGKYIAFV--RDNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE-ESS-EETTB-SEEEE-SSSTEEEEE--ETTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE-ECcCCcccc-ccceeecCCCeeEEE--ecCceEEEECCCCCeE
Confidence 6888877763 23567889999886553 333223344 445999999664443 4688999988543222
Q ss_pred eEEecc-------C---------CCCeEEEEEcCCCCEEEEEEecCCcC
Q 008196 74 VSWLKQ-------H---------SAPTAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 74 l~tl~g-------H---------~~~VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
..+..+ - -+.-..+-|||||++|+..-.|....
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v 125 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREV 125 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCC
Confidence 111222 0 11235688999999999988776554
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.39 E-value=0.43 Score=56.10 Aligned_cols=93 Identities=17% Similarity=0.278 Sum_probs=69.0
Q ss_pred ccCCCCEEEEEe----CCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEe
Q 008196 2 YNCKDEHLASIS----LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (574)
Q Consensus 2 FSpDG~~LASGS----~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl 77 (574)
|+|..-++|.++ ..|.|.|+-= +|+.......+- .+..++|+|.. .+|+.|-.-|.+.+|.....+ .....
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt~P~--hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e-~htv~ 97 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDVTYPV--HATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE-THTVV 97 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEec-CCCCCcccccce--ehhhhccChHH-HHHhhccccceeEEEecCCce-eeeec
Confidence 677777888776 5778888743 676544333221 12456999984 778999999999999986532 33346
Q ss_pred ccCCCCeEEEEEcCCCCEEEEE
Q 008196 78 KQHSAPTAGISFSSDDKAVSSL 99 (574)
Q Consensus 78 ~gH~~~VtSVaFSPDG~~LaS~ 99 (574)
..|..+|..+.||++|..++++
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~ 119 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTL 119 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEc
Confidence 7899999999999999999984
No 317
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=91.25 E-value=3.5 Score=43.25 Aligned_cols=103 Identities=9% Similarity=0.056 Sum_probs=66.0
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCC------CCeEEEEEEccCC-----CeEEEEEeCCCcEEEEeCC-
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPN------EQVLRVLDYSRNS-----RHLLVTAGDDGTLHLWDTT- 68 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~------~~Vvs~LafSPdG-----r~LLaSgS~DGtVrLWDl~- 68 (574)
.|+||+.+||.+...|+|+|+|+ .|..+..+.... ...+..|.|-.-. ...|+.-..+|.++=|-+.
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl-~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~ 128 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDL-MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV 128 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEec-ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence 48999999999999999999999 455555555322 2233555554421 1235555677777776651
Q ss_pred --C-CCce--eEEec-cCCCCeEEEEEcCCCCEEEEEEecCC
Q 008196 69 --G-RSPK--VSWLK-QHSAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 69 --~-~~~l--l~tl~-gH~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
. .... ...+. .+...|.++.|+|..+.|+.+++...
T Consensus 129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~ 170 (282)
T PF15492_consen 129 GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN 170 (282)
T ss_pred ccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC
Confidence 1 1111 11222 34667999999999888888765543
No 318
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=91.18 E-value=0.39 Score=53.55 Aligned_cols=92 Identities=27% Similarity=0.283 Sum_probs=64.7
Q ss_pred CccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCC---------------CcEEEE
Q 008196 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD---------------GTLHLW 65 (574)
Q Consensus 1 ~FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~D---------------GtVrLW 65 (574)
.|||.|.+|++....| |.+|+-..+..+..+. +..+ ..+.|+|.+ .+|.+=+.. +.+.+|
T Consensus 39 ~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V-~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vw 113 (561)
T COG5354 39 SESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDV-KYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVW 113 (561)
T ss_pred eecCcchheehhhccc-eEEccccchhheeeee--cCCc-eecccCccc-ceeeeeccCCccChhhccCCccccCceeEE
Confidence 4899999999986554 9999988777666666 4456 666999998 557775433 349999
Q ss_pred eCCCCCceeEEeccCCCC--eE-EEEEcCCCCEEEE
Q 008196 66 DTTGRSPKVSWLKQHSAP--TA-GISFSSDDKAVSS 98 (574)
Q Consensus 66 Dl~~~~~ll~tl~gH~~~--Vt-SVaFSPDG~~LaS 98 (574)
|+.+. .++..+.+-..+ .+ -+.|+.++.+++=
T Consensus 114 d~~sg-~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 114 DIASG-MIVFSFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred eccCc-eeEeeccccCCcccccceeeeeecchhhhh
Confidence 99774 344455554444 55 6788887766553
No 319
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=91.00 E-value=0.64 Score=45.93 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 550 LENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 550 ~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+.++..|.+.|++|.+|||.||.+
T Consensus 54 l~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 54 LNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888888999999986
No 320
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=90.99 E-value=1.1 Score=50.02 Aligned_cols=92 Identities=18% Similarity=0.285 Sum_probs=62.9
Q ss_pred ccCCCCEEEEEe--CCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCC---CcEEEEeCCCCCceeEE
Q 008196 2 YNCKDEHLASIS--LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD---GTLHLWDTTGRSPKVSW 76 (574)
Q Consensus 2 FSpDG~~LASGS--~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~D---GtVrLWDl~~~~~ll~t 76 (574)
|+|.++.+++++ ++..+-++|+. +.....+.. ..- ..+-|+|.+++ ++.++.| |.|-+||..++..++..
T Consensus 282 W~p~S~~F~vi~g~~pa~~s~~~lr-~Nl~~~~Pe--~~r-NT~~fsp~~r~-il~agF~nl~gni~i~~~~~rf~~~~~ 356 (561)
T COG5354 282 WEPLSSRFAVISGYMPASVSVFDLR-GNLRFYFPE--QKR-NTIFFSPHERY-ILFAGFDNLQGNIEIFDPAGRFKVAGA 356 (561)
T ss_pred ecccCCceeEEecccccceeecccc-cceEEecCC--ccc-ccccccCcccE-EEEecCCccccceEEeccCCceEEEEE
Confidence 778888777655 78889999995 444444332 222 23379999866 5555554 77999999886665545
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEE
Q 008196 77 LKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 77 l~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
+.+-. ..-+.|+||++++.+..
T Consensus 357 ~~~~n--~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 357 FNGLN--TSYCDWSPDGQFYDTDT 378 (561)
T ss_pred eecCC--ceEeeccCCceEEEecC
Confidence 55544 34567999999988743
No 321
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=90.81 E-value=2 Score=45.01 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=56.6
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCc--eeEEecCCC--CCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEec
Q 008196 3 NCKDEHLASISLSGDLILHNLASGA--KAAELKDPN--EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~--~l~t~~gh~--~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~ 78 (574)
+.||++||.- .|..|.|-..+..- .+....-++ ..-.+-|+||||+ .+||.+...|+|++||+.+.... .+.
T Consensus 6 ~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf--~I~ 81 (282)
T PF15492_consen 6 SSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF--VIP 81 (282)
T ss_pred cCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeE--EcC
Confidence 5788888877 78888888876532 233333222 2233778999998 88999999999999999763222 221
Q ss_pred -c------CCCCeEEEEEcC
Q 008196 79 -Q------HSAPTAGISFSS 91 (574)
Q Consensus 79 -g------H~~~VtSVaFSP 91 (574)
+ -...|..+.|-.
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~ 101 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLE 101 (282)
T ss_pred cccccCCccccceeeeEeec
Confidence 1 234577777753
No 322
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.70 E-value=0.24 Score=57.38 Aligned_cols=96 Identities=19% Similarity=0.323 Sum_probs=63.1
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCc-eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~-~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|+...-.+...+....|+|||+..|. .+..+++|...+ ..++|...-...+.+++.|++|++||..............
T Consensus 166 wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v-n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 166 WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV-NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred ecccCcchhhhccCCceEEEeccCCCcceEEecccceee-ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 34433334444466779999998774 578888876655 6668876544568899999999999994322222223445
Q ss_pred CCCeEEEEEcCCCCEEEE
Q 008196 81 SAPTAGISFSSDDKAVSS 98 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS 98 (574)
..+|+.-+|-|-|+..+.
T Consensus 245 ~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred cCcceeccccccCceeEe
Confidence 567777777776554444
No 323
>PRK14127 cell division protein GpsB; Provisional
Probab=90.60 E-value=0.49 Score=43.00 Aligned_cols=35 Identities=20% Similarity=0.487 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 539 ETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 539 ~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+.|+...|+.+..+.+.|.+||++|++||++|+..
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~ 59 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQ 59 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777777777777654
No 324
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.53 E-value=4.8 Score=43.26 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=62.1
Q ss_pred ccCCCCEEEEE-eCC----CcEEEEECCCCceeEEe-cCCCCCeEEEEEEccCCCeEEEEEeCC----------CcEEEE
Q 008196 2 YNCKDEHLASI-SLS----GDLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDD----------GTLHLW 65 (574)
Q Consensus 2 FSpDG~~LASG-S~D----GtVrIWDl~Tg~~l~t~-~gh~~~Vvs~LafSPdGr~LLaSgS~D----------GtVrLW 65 (574)
++|||++||-+ +.. .+|+|+|+.+|+.+... ..... ..+.|.++++.++.+...+ ..|++|
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~---~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF---SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES---EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc---ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 68999988855 333 44999999999776533 22111 2269999987767766443 237888
Q ss_pred eCCCCCce-eEEeccCCCC--eEEEEEcCCCCEEEEEEecCCc
Q 008196 66 DTTGRSPK-VSWLKQHSAP--TAGISFSSDDKAVSSLCWQRAK 105 (574)
Q Consensus 66 Dl~~~~~l-l~tl~gH~~~--VtSVaFSPDG~~LaS~sWD~sg 105 (574)
++.+.... ...+.+.... ...+..++|+++|+..+.....
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~ 250 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS 250 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc
Confidence 88543221 1223333322 5678889999998876655443
No 325
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.47 E-value=2.5 Score=41.17 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 497 GSNFTLQLFQRTLEETLDSFQ--KSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 497 ~~~~~~~~~~~~~~e~l~~~~--~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+-.+ +..+..++.+.++.+. -..++|+.|+-..+=..|...+.||..+- ....++|+.|+++|+.|.++||+.
T Consensus 21 Ae~i-~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~---k~~~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 21 AEAI-MKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSR---KSEFAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 5777777777776543 34578888866555555555555554321 344567777777777777777764
No 326
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.36 E-value=0.8 Score=55.09 Aligned_cols=90 Identities=16% Similarity=0.370 Sum_probs=59.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEE
Q 008196 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG 86 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtS 86 (574)
.+++.|+..|.|...|....-+......+....+.+++|+.+| .+++.|-.+|.|.+||+... ..++.+..|..++.+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVTG 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCC-cceeeeeecCCccce
Confidence 4688888899999888843212112223334444889999998 66888999999999999774 344456666666555
Q ss_pred EEE---cCCCCEEEE
Q 008196 87 ISF---SSDDKAVSS 98 (574)
Q Consensus 87 VaF---SPDG~~LaS 98 (574)
+-+ ..++..+++
T Consensus 178 vi~v~~t~~nS~llt 192 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLT 192 (1206)
T ss_pred EEEEEEeCCCcEEEE
Confidence 444 344454444
No 327
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=90.07 E-value=0.37 Score=49.06 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 545 VMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 545 ~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
-|+++.-.+.+|.+|++.|+.||+.||+.
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666778888888888888888863
No 328
>PF15294 Leu_zip: Leucine zipper
Probab=89.97 E-value=1.6 Score=45.70 Aligned_cols=19 Identities=47% Similarity=0.686 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 008196 556 LMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 556 l~~E~~~lr~en~~lr~~~ 574 (574)
|.+||.+|++||+.||.+|
T Consensus 130 l~kEi~rLq~EN~kLk~rl 148 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERL 148 (278)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999764
No 329
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=89.82 E-value=0.32 Score=31.12 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.8
Q ss_pred ccCCCCEEEEEeCCCcEEEEE
Q 008196 2 YNCKDEHLASISLSGDLILHN 22 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWD 22 (574)
|+++++++++++.|+.|++||
T Consensus 20 ~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 20 FSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ECCCCCEEEEecCCCeEEEcC
Confidence 667788999999999999996
No 330
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=89.63 E-value=0.38 Score=51.55 Aligned_cols=66 Identities=24% Similarity=0.504 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCce-eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~-l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~ 69 (574)
|.+....|++|..|..|.+||+--..- ...+.+|.+.+ ..+.+.+.-++ +++++.||.|.+||.+.
T Consensus 205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV-~~l~~~~~t~~-l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV-QALSYAQHTRQ-LISCGEDGGIVVWNMNV 271 (404)
T ss_pred EcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh-hhhhhhhhhee-eeeccCCCeEEEEeccc
Confidence 566778999999999999999954332 45666777777 66677666544 89999999999999954
No 331
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.41 E-value=6 Score=33.15 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 504 LFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 504 ~~~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
-.-..|++.|+...+.+ ++.--++.+|++=+ .....-+..--.+..+|+.||++||+||+.+|.
T Consensus 5 a~~~~Lr~rLd~~~rk~--~~~~~~~k~L~~ER---d~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKN--SVHEIENKRLRRER---DSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445666665544322 23334444455422 111111222234478899999999999998874
No 332
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.12 E-value=0.54 Score=52.33 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 549 ILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 549 ~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+.....+|.+|.++|++|-+||+.+
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~ 131 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGL 131 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777888888887777654
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.97 E-value=3.4 Score=47.89 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=63.6
Q ss_pred ccCCCCEEEEEe-CCCcEEEEECCCCce------------eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC
Q 008196 2 YNCKDEHLASIS-LSGDLILHNLASGAK------------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (574)
Q Consensus 2 FSpDG~~LASGS-~DGtVrIWDl~Tg~~------------l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~ 68 (574)
++|||++++.++ .+.+|-|.|+.+.+. +.+..-..+.. .. +|.++| +...|...|..|..||+.
T Consensus 328 vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HT-aFDg~G-~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 328 TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HT-AFDGRG-NAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eE-EECCCC-CEEEeEeecceeEEEehH
Confidence 689999877665 599999999987552 34444333333 44 899998 568889999999999984
Q ss_pred CC---------CceeEEeccCCCCeEE-----EEEcCCCCEEEEEE
Q 008196 69 GR---------SPKVSWLKQHSAPTAG-----ISFSSDDKAVSSLC 100 (574)
Q Consensus 69 ~~---------~~ll~tl~gH~~~VtS-----VaFSPDG~~LaS~s 100 (574)
.. ...+..+.-|-.+..- -.-.+||++|++.+
T Consensus 405 ~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 405 AAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred HHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 31 1233333334433222 22358999999854
No 334
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.81 E-value=1.3 Score=51.66 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 497 GSNFTLQLFQRTLEETLDSFQKSIHEDMR----NLHIEILR----QFHMQETQMSNVMSSILENQAELMKEIKSLRKENH 568 (574)
Q Consensus 497 ~~~~~~~~~~~~~~e~l~~~~~~~~~d~~----nlh~e~lr----qf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~ 568 (574)
+-..||+-==|||..+|.+ |+.+.++-+ ||-|.-|+ .++.|-.|...-.+.+..+++||.|.|+.+|+||+
T Consensus 394 sENaqLrRrLrilnqqlre-qe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk 472 (861)
T PF15254_consen 394 SENAQLRRRLRILNQQLRE-QEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENK 472 (861)
T ss_pred hhhHHHHHHHHHHHHHHHH-HHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445554444677777777 444444333 55554443 56778888888899999999999999999999999
Q ss_pred HHHhh
Q 008196 569 QLRQL 573 (574)
Q Consensus 569 ~lr~~ 573 (574)
+||..
T Consensus 473 ~~~~~ 477 (861)
T PF15254_consen 473 RLRKM 477 (861)
T ss_pred HHHHH
Confidence 99975
No 335
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.79 E-value=4.2 Score=43.24 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=65.4
Q ss_pred CccCCCCEEEEEe-----CCCcEEEEECC-CCceeEEecCCCCCeEEEEEEccCCCeEEEEE-e-----CCCcEEE----
Q 008196 1 MYNCKDEHLASIS-----LSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA-G-----DDGTLHL---- 64 (574)
Q Consensus 1 ~FSpDG~~LASGS-----~DGtVrIWDl~-Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSg-S-----~DGtVrL---- 64 (574)
+|++||++|++.- ..|.|-|||.. .-..+..|..+.-.. ..|.+.|||+.|++.- + +.|..++
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGP-Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGP-HELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcCh-hhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 5999999988864 46789999998 456677887665444 4457999996644432 1 1123333
Q ss_pred -------EeCCCCCceeE-Ee--ccCCCCeEEEEEcCCCCEEEEEEecCC
Q 008196 65 -------WDTTGRSPKVS-WL--KQHSAPTAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 65 -------WDl~~~~~ll~-tl--~gH~~~VtSVaFSPDG~~LaS~sWD~s 104 (574)
-|..+...+-+ .+ ..|.-.|+.+++..+|..++..=|+..
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~ 185 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD 185 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCC
Confidence 23322222211 23 336667999999999888877666543
No 336
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.66 E-value=1.7 Score=50.72 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=60.7
Q ss_pred EEEEEeCCCcEEEEECCCC---ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 8 HLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 8 ~LASGS~DGtVrIWDl~Tg---~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
+-+........+||++... .....+.+|...+ ..+-|+|+.+.++++|+.|..|+.||++.....+.....-....
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghsrai-td~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAI-TDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA 161 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccceEEEEecCccce-eccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence 4444445666789998542 2233445666666 77799999888999999999999999976544443333333355
Q ss_pred EEEEEc-CCCCEEEE
Q 008196 85 AGISFS-SDDKAVSS 98 (574)
Q Consensus 85 tSVaFS-PDG~~LaS 98 (574)
..|.|+ .++..+++
T Consensus 162 sqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLAS 176 (1081)
T ss_pred ceeeecccCcchhhh
Confidence 778887 45555554
No 337
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=88.51 E-value=0.57 Score=37.94 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 544 NVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 544 ~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
.-++-+.+.+++|++.|.+|..||+.||+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666788899999999999999999985
No 338
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.46 E-value=2.2 Score=48.10 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=33.4
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 518 KSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKEN 567 (574)
Q Consensus 518 ~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en 567 (574)
+.+.+.+..||+|+-+-=+..++|+..++--|...+++.++++|.+++||
T Consensus 456 r~l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~~n 505 (588)
T KOG3612|consen 456 RSLVAATEKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHAEN 505 (588)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 44567788999988766666666666666666666666666666665555
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.42 E-value=6 Score=45.90 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=53.3
Q ss_pred CCcEEEEECCC----C-ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCc-----------eeEEec
Q 008196 15 SGDLILHNLAS----G-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-----------KVSWLK 78 (574)
Q Consensus 15 DGtVrIWDl~T----g-~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~-----------ll~tl~ 78 (574)
++.|.|.|..+ + +.+..+.-.+ .+ ..|.++|||+++++++..+.+|.|.|+..... ++....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sP-HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK-NP-HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC-Cc-cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 46688888877 2 3444444333 23 45599999999899999999999999955221 122222
Q ss_pred cCCCCeEEEEEcCCCCEEEEEE
Q 008196 79 QHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~s 100 (574)
--. .-...+|.++|....+.-
T Consensus 373 vGl-GPLHTaFDg~G~aytslf 393 (635)
T PRK02888 373 LGL-GPLHTAFDGRGNAYTTLF 393 (635)
T ss_pred cCC-CcceEEECCCCCEEEeEe
Confidence 212 234668988887665543
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.31 E-value=2.4 Score=49.78 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=63.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeE
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~Vt 85 (574)
+++|+-|..+|.|++++. .|.. .+...|... ..+| .++++|+.||+|.|.-+-+..... ......++.
T Consensus 49 ~~~~~~GtH~g~v~~~~~-~~~~-~~~~~~s~~-------~~~G-ey~asCS~DGkv~I~sl~~~~~~~--~~df~rpik 116 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTC-QGNP-KTNFDHSSS-------ILEG-EYVASCSDDGKVVIGSLFTDDEIT--QYDFKRPIK 116 (846)
T ss_pred cceeeeccccceEEEEec-CCcc-ccccccccc-------ccCC-ceEEEecCCCcEEEeeccCCccce--eEecCCcce
Confidence 678999999999999988 3444 333334322 4567 459999999999998874432221 123345899
Q ss_pred EEEEcCC-----CCEEEEEEecCCcCEEEeccCCC
Q 008196 86 GISFSSD-----DKAVSSLCWQRAKPVFIDETTCK 115 (574)
Q Consensus 86 SVaFSPD-----G~~LaS~sWD~sg~viv~e~~~s 115 (574)
+|+++|+ .+.+++++ ..+ +++.++++-
T Consensus 117 sial~Pd~~~~~sk~fv~GG--~ag-lvL~er~wl 148 (846)
T KOG2066|consen 117 SIALHPDFSRQQSKQFVSGG--MAG-LVLSERNWL 148 (846)
T ss_pred eEEeccchhhhhhhheeecC--cce-EEEehhhhh
Confidence 9999998 56666654 333 666665553
No 341
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=88.14 E-value=1.3 Score=46.37 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 008196 554 AELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 554 ~~l~~E~~~lr~en~~lr~~~ 574 (574)
++|....+.|++||+|||++|
T Consensus 87 ~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 87 QQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444445888888888875
No 342
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.07 E-value=5.9 Score=41.22 Aligned_cols=42 Identities=31% Similarity=0.338 Sum_probs=32.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 531 ILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 531 ~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
-|+|-...-.-|..-|..+.+..++|.+||..||+|.++||.
T Consensus 180 ~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 180 ALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444567777788888899999999999999999985
No 343
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.73 E-value=2.9 Score=44.23 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=33.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~ 70 (574)
+.+++.++.||.|..+|..+|+.++......+........ .+ ..|+.++.||.|++||..+.
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCC
Confidence 4556666667777777777676665543211111111111 12 23666677777777777543
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.73 E-value=7.6 Score=40.81 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=60.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeE
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~Vt 85 (574)
|++++.|+..|.+.+.+..+|...+.+.....--++. ...+++ .+|.+|+.|++.+.-|..+.+... ..+--.....
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~-glIycgshd~~~yalD~~~~~cVy-kskcgG~~f~ 139 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA-QCDFDG-GLIYCGSHDGNFYALDPKTYGCVY-KSKCGGGTFV 139 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccce-EEcCCC-ceEEEecCCCcEEEecccccceEE-ecccCCceec
Confidence 6789999999999999999998888877543322233 456776 789999999999999997754332 3332222233
Q ss_pred EEEEcC-CCCEEEE
Q 008196 86 GISFSS-DDKAVSS 98 (574)
Q Consensus 86 SVaFSP-DG~~LaS 98 (574)
+-++.+ ++...++
T Consensus 140 sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAA 153 (354)
T ss_pred cceecCCCceEEEE
Confidence 444555 4444333
No 345
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.22 E-value=6.5 Score=40.09 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 500 FTLQLFQRTLEETLDSFQKSIHE------DMRNLHIEILRQFHMQET---QMSNVMSSILENQAELMKEIKSLRKENHQL 570 (574)
Q Consensus 500 ~~~~~~~~~~~e~l~~~~~~~~~------d~~nlh~e~lrqf~~~~~---e~~~~~~~~~~~~~~l~~E~~~lr~en~~l 570 (574)
+-.+|++.-|+.+|-----.+-+ ||+-.-.|+=-.|...+. |+..-+++..++.+++++++++|+.||.||
T Consensus 103 iD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 103 IDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666654322222222 555555555444554443 455555666677777777888888887776
Q ss_pred H
Q 008196 571 R 571 (574)
Q Consensus 571 r 571 (574)
-
T Consensus 183 e 183 (290)
T COG4026 183 E 183 (290)
T ss_pred H
Confidence 3
No 346
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=86.82 E-value=1.5 Score=45.91 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=26.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 534 QFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 534 qf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
.|.-.+.|-+.+=++ +.++..+..|++.|++||+|||.+|
T Consensus 67 ~~~~~~~en~~Lk~~-l~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 67 SLKDLALENEELKKE-LAELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HhHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334443333333 5557788889999999999999875
No 347
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=86.78 E-value=2.6 Score=47.77 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=61.2
Q ss_pred ccCCCCEEEEEeC---CCcEEEEECCC-Cc---eeEEecCCCCCeEEEEEEccCCCeEEEE--EeCCCcEEEEeCCCCCc
Q 008196 2 YNCKDEHLASISL---SGDLILHNLAS-GA---KAAELKDPNEQVLRVLDYSRNSRHLLVT--AGDDGTLHLWDTTGRSP 72 (574)
Q Consensus 2 FSpDG~~LASGS~---DGtVrIWDl~T-g~---~l~t~~gh~~~Vvs~LafSPdGr~LLaS--gS~DGtVrLWDl~~~~~ 72 (574)
|-|.|+.+++-+. ..+|.+|-+++ .. .+..+. ...+..|.|+|.|+.+++. +|..|.+.++|+.-...
T Consensus 453 WEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~ 529 (698)
T KOG2314|consen 453 WEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL 529 (698)
T ss_pred eccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecchhhh
Confidence 6788887776553 45677887763 22 223333 2333666999999553333 25689999999964222
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 73 KVSWLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 73 ll~tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
.......|. ..+.+.|.|.|+++++++
T Consensus 530 k~~~~~eh~-~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 530 KDTASPEHF-AATEVEWDPTGRYVVTSS 556 (698)
T ss_pred hhccCcccc-ccccceECCCCCEEEEee
Confidence 222334455 468899999999999855
No 348
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.53 E-value=4.4 Score=49.61 Aligned_cols=102 Identities=11% Similarity=0.176 Sum_probs=63.7
Q ss_pred ccCCCCEEEEEe----CC-CcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEE---eCCCcEEEEeCCCCCce
Q 008196 2 YNCKDEHLASIS----LS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA---GDDGTLHLWDTTGRSPK 73 (574)
Q Consensus 2 FSpDG~~LASGS----~D-GtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSg---S~DGtVrLWDl~~~~~l 73 (574)
|--||+|+|+.. .+ ..|+|||.+ |.. ..........-.+++|-|.| .++++- ..|+.|.+|.-++...-
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCcccc
Confidence 567899999833 33 789999996 443 33332333333677999988 546553 34567999887653222
Q ss_pred eEE--eccCCCCeEEEEEcCCCCEEEEEEecCCcC
Q 008196 74 VSW--LKQHSAPTAGISFSSDDKAVSSLCWQRAKP 106 (574)
Q Consensus 74 l~t--l~gH~~~VtSVaFSPDG~~LaS~sWD~sg~ 106 (574)
... +......|..++|+.++..|+.......+.
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~ 314 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENS 314 (1265)
T ss_pred ccccCCcccccchheeeecCCCCceeeeecccccc
Confidence 111 112222389999999999998854444433
No 349
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=86.50 E-value=1 Score=50.54 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 545 VMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 545 ~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
.|..+..++.+|.+|++.||+||--|||+|
T Consensus 303 y~~~Le~rLq~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 303 YMLGLEARLQALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 455556678899999999999999999875
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=86.46 E-value=1.5 Score=51.99 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=43.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCce-eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC
Q 008196 6 DEHLASISLSGDLILHNLASGAK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT 67 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~-l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl 67 (574)
..+||.|+.+|.||+||- .|.. ...|.+-. ..+..|+.+.||+++|+|| +..+.|+|.
T Consensus 588 ~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG-~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 588 DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLG-DPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred CceEEEEeCCCcEEeecc-cchhhhhcCCCCC-CCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 348999999999999996 4443 33333334 4447889999999988887 567888886
No 351
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.44 E-value=4.5 Score=34.77 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHh
Q 008196 547 SSILENQAELMKEIKS-------LRKENHQLRQ 572 (574)
Q Consensus 547 ~~~~~~~~~l~~E~~~-------lr~en~~lr~ 572 (574)
+++.++...|.+|++. |++||+|||+
T Consensus 28 eELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 28 EELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4455556666666555 6666666664
No 352
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=86.39 E-value=2.1 Score=45.59 Aligned_cols=100 Identities=21% Similarity=0.315 Sum_probs=63.1
Q ss_pred ccCCC-CEEEEEeCCCcEEEEECCCCce-eE-------Eec--------CCCCCeEEEEEEccCCCeEEEEEeCCCcEEE
Q 008196 2 YNCKD-EHLASISLSGDLILHNLASGAK-AA-------ELK--------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL 64 (574)
Q Consensus 2 FSpDG-~~LASGS~DGtVrIWDl~Tg~~-l~-------t~~--------gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrL 64 (574)
|+|.. +.+...+..|.|+|-|++.... .. ++. +....+ ..+.|++.|+ +|++.+. -+|+|
T Consensus 229 Fhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSI-SD~kFs~ngr-yIlsRdy-ltvki 305 (460)
T COG5170 229 FHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSI-SDFKFSDNGR-YILSRDY-LTVKI 305 (460)
T ss_pred cCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhh-cceEEcCCCc-EEEEecc-ceEEE
Confidence 55543 3666777899999999974321 11 111 111223 6679999994 4766544 58999
Q ss_pred EeCCCCCceeEEeccCCC------------C---eEEEEEcCCCCEEEEEEecCC
Q 008196 65 WDTTGRSPKVSWLKQHSA------------P---TAGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 65 WDl~~~~~ll~tl~gH~~------------~---VtSVaFSPDG~~LaS~sWD~s 104 (574)
||+......+.+..-|+. . -..+.|+.|...++++++...
T Consensus 306 wDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NN 360 (460)
T COG5170 306 WDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNN 360 (460)
T ss_pred EecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccc
Confidence 999654444555544432 2 245788888899988887643
No 353
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=85.60 E-value=1.2 Score=37.01 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008196 550 LENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 550 ~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
..+++.|..-.++||+||..||+
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~ 28 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRA 28 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 354
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=85.27 E-value=0.9 Score=48.32 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=64.5
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCc---eeEEecCCCC----CeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCce-
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNE----QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK- 73 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~---~l~t~~gh~~----~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~l- 73 (574)
|+.|.+.++++ .|=.|.+|++..-. .+..++.|+. .|+....|+|....++.-.+..|+|++-|++....+
T Consensus 180 ~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 180 FNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred ecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 56677777776 68889999996532 2445555542 355666899976565666678899999999532111
Q ss_pred ----e--EE--------eccCCCCeEEEEEcCCCCEEEEE
Q 008196 74 ----V--SW--------LKQHSAPTAGISFSSDDKAVSSL 99 (574)
Q Consensus 74 ----l--~t--------l~gH~~~VtSVaFSPDG~~LaS~ 99 (574)
+ .+ +.+-...|..+.|+++|++|++.
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 1 01 11223358889999999999983
No 355
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.25 E-value=3.9 Score=41.62 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHH---------h-hhHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 503 QLFQRTLEETLDSFQKS---IHEDMRNLHIEILRQ---------F-HMQE-----TQMSNVMSSILENQAELMKEIKSLR 564 (574)
Q Consensus 503 ~~~~~~~~e~l~~~~~~---~~~d~~nlh~e~lrq---------f-~~~~-----~e~~~~~~~~~~~~~~l~~E~~~lr 564 (574)
+-|+.-|+.+.+-+.+. |--||.-+.+||+|. + ..++ |+|....+++.++++++.+|++.|+
T Consensus 76 ~kf~eeLrg~VGhiERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~ 155 (290)
T COG4026 76 EKFFEELRGMVGHIERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELL 155 (290)
T ss_pred HHHHHHHHHhhhhhheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666655544322 233444444555442 2 2233 5888889999999999999999999
Q ss_pred HHHHHHH
Q 008196 565 KENHQLR 571 (574)
Q Consensus 565 ~en~~lr 571 (574)
+||++|-
T Consensus 156 ~eleele 162 (290)
T COG4026 156 KELEELE 162 (290)
T ss_pred HHHHHHH
Confidence 9998874
No 356
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.20 E-value=6.4 Score=40.26 Aligned_cols=49 Identities=31% Similarity=0.435 Sum_probs=35.3
Q ss_pred HHhHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 525 RNLHIEILRQFHMQETQMSNVMSS-------ILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 525 ~nlh~e~lrqf~~~~~e~~~~~~~-------~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+.-|+|.|||-|.-.+.|..++.. ..+....|++|+..|+.|.+++|+-
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455999999999988888888744 3444555666777777777777653
No 357
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=85.15 E-value=2.9 Score=53.12 Aligned_cols=90 Identities=12% Similarity=0.254 Sum_probs=67.4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCC
Q 008196 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (574)
Q Consensus 4 pDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~ 83 (574)
|-.-+.+||+.||.|++|.-..++.+..++.....-+..+.|+.+|.. ...+..||.+.+|.+... .+...+.|...
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk-~~i~d~dg~l~l~q~~pk--~~~s~qchnk~ 2294 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK-FGIVDGDGDLSLWQASPK--PYTSWQCHNKA 2294 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc-eeeeccCCceeecccCCc--ceeccccCCcc
Confidence 445588999999999999998888888887544343355599999966 777889999999999742 23345678777
Q ss_pred eEEEEEcCCCCEEEE
Q 008196 84 TAGISFSSDDKAVSS 98 (574)
Q Consensus 84 VtSVaFSPDG~~LaS 98 (574)
...+.|-- ..+++
T Consensus 2295 ~~Df~Fi~--s~~~t 2307 (2439)
T KOG1064|consen 2295 LSDFRFIG--SLLAT 2307 (2439)
T ss_pred ccceeeee--hhhhc
Confidence 88888843 44555
No 358
>PRK13616 lipoprotein LpqB; Provisional
Probab=84.53 E-value=7 Score=45.13 Aligned_cols=90 Identities=10% Similarity=0.161 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEe------CCCc--EEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCC-CcEEEE-------
Q 008196 2 YNCKDEHLASIS------LSGD--LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-GTLHLW------- 65 (574)
Q Consensus 2 FSpDG~~LASGS------~DGt--VrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~D-GtVrLW------- 65 (574)
.++||+.+|..- .|+. |.+++. .+.. ..+.... .. ..-.|+|||+. |++.... ..+++.
T Consensus 357 iSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~-~~-t~PsWspDG~~-lw~v~dg~~~~~v~~~~~~gq 431 (591)
T PRK13616 357 LSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGH-SL-TRPSWSLDADA-VWVVVDGNTVVRVIRDPATGQ 431 (591)
T ss_pred ECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCC-CC-CCceECCCCCc-eEEEecCcceEEEeccCCCce
Confidence 578999877665 2444 444454 2333 3332222 12 33389999855 4444322 222222
Q ss_pred ----eCCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 66 ----DTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 66 ----Dl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
++.+..... .....|..+.|||||..|+...
T Consensus 432 l~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 432 LARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred EEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE
Confidence 333321111 2345799999999999998865
No 359
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.38 E-value=6.3 Score=46.80 Aligned_cols=97 Identities=18% Similarity=0.335 Sum_probs=63.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCc-----EEEEeCCC---CC-c
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-----LHLWDTTG---RS-P 72 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGt-----VrLWDl~~---~~-~ 72 (574)
|++.+..++.|+.||.|-++|- .-+.+..|+.+...++..+ |.-++..+|++-+.|.. |+|||+.. .. +
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 6788899999999999988877 3344577777765543443 44455567888777654 99999932 11 2
Q ss_pred eeE---Eecc-----CCCCeEEEEEcCCCCEEEEEE
Q 008196 73 KVS---WLKQ-----HSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 73 ll~---tl~g-----H~~~VtSVaFSPDG~~LaS~s 100 (574)
... .+.. ...++.+++.+-+-..++.|-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf 144 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF 144 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe
Confidence 211 2222 245688888888866666543
No 360
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=84.37 E-value=0.3 Score=49.16 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 540 TQMSNVMSSILENQAELMKEIKSLRKENHQL 570 (574)
Q Consensus 540 ~e~~~~~~~~~~~~~~l~~E~~~lr~en~~l 570 (574)
..++.+++-++++++.|++||++|+.||.||
T Consensus 132 ~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 132 ADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666666666555
No 361
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=84.25 E-value=6.9 Score=39.31 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHH---HHHH--HHHHH------------HHHHHHHHHHHHHHHHHHHH
Q 008196 509 LEETLDSFQKSIHEDMRNLHIEILRQFHMQETQM---SNVM--SSILE------------NQAELMKEIKSLRKENHQLR 571 (574)
Q Consensus 509 ~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~---~~~~--~~~~~------------~~~~l~~E~~~lr~en~~lr 571 (574)
|++.+...+.+..+-++-+|...|+.-.-++.|+ .-++ +.... -...+.+--..+.+||+|||
T Consensus 90 Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~ 169 (206)
T PF14988_consen 90 LEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLR 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666777777777777777777766 2222 11111 12235555566777777777
Q ss_pred hh
Q 008196 572 QL 573 (574)
Q Consensus 572 ~~ 573 (574)
..
T Consensus 170 k~ 171 (206)
T PF14988_consen 170 KE 171 (206)
T ss_pred HH
Confidence 64
No 362
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=84.01 E-value=1.4 Score=37.59 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 545 VMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 545 ~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
++.++.+++++|.+|++.|..|.|++++-
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36788889999999999999999998863
No 363
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=83.74 E-value=5.1 Score=33.85 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=38.9
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 519 SIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 519 ~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
..-++|++++-.|.++=+..+.||+.++-.=-.++=+-.+||..|+++..+|+.+
T Consensus 19 ~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~ 73 (87)
T PF08700_consen 19 SSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNL 73 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888888887433334556667777777777777654
No 364
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=83.73 E-value=10 Score=37.29 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 499 NFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 499 ~~~~~~~~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
-.-|+.|-.-.|+++.+|++.|--++-.--|+-+ |...+.||..||.++. .+..|..+|..+....++-||+|
T Consensus 103 ItELDVvL~~FEk~~~eYkq~ieS~~cr~AI~~F--~~~~keqL~~~i~evq-~lK~lkrkNakv~~~i~kkrqrL 175 (175)
T PF13097_consen 103 ITELDVVLSAFEKTALEYKQSIESKICRKAINKF--YSNFKEQLIEMIKEVQ-ELKNLKRKNAKVISDINKKRQRL 175 (175)
T ss_pred chHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcC
Confidence 3468999999999999999999877765554432 3456788999999954 48888888888888888888876
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.32 E-value=10 Score=40.39 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=59.3
Q ss_pred CccCCCCEEEEEe-----CCCcEEEEECCCC-ceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEE-e-------
Q 008196 1 MYNCKDEHLASIS-----LSGDLILHNLASG-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW-D------- 66 (574)
Q Consensus 1 ~FSpDG~~LASGS-----~DGtVrIWDl~Tg-~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLW-D------- 66 (574)
+|++||.+|+.-- ..|.|=|||...+ +.+..+..|.-.. ..|.|.+||+.+++.. |-|..- |
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGp-Hev~lm~DGrtlvvan---GGIethpdfgR~~lN 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGP-HEVTLMADGRTLVVAN---GGIETHPDFGRTELN 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCc-ceeEEecCCcEEEEeC---CceecccccCccccc
Confidence 6999999888654 3467889999755 3466777665444 4558999996544433 223322 1
Q ss_pred CCCCCcee-------------EEec--cCCCCeEEEEEcCCCCEEEEEEec
Q 008196 67 TTGRSPKV-------------SWLK--QHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 67 l~~~~~ll-------------~tl~--gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
+...++.+ .++. .+.-.|+.++..+||..++-+=+.
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 11111111 1122 234458889999998877765443
No 366
>smart00338 BRLZ basic region leucin zipper.
Probab=82.93 E-value=3.1 Score=33.78 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 542 MSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 542 ~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
|..-++.+.....+|..++..|+.||+.|+..|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555567788888888888888888753
No 367
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.75 E-value=3.2 Score=44.10 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=18.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 533 RQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 533 rqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+|....+.|...-|..|. .|.+.+|+||.+||+.
T Consensus 243 ~qL~~sq~e~~~k~~~~~-------~eek~ireEN~rLqr~ 276 (310)
T PF09755_consen 243 QQLAASQQEHSEKMAQYL-------QEEKEIREENRRLQRK 276 (310)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344455555554444444 4455566666666554
No 368
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.65 E-value=14 Score=37.67 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 542 MSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 542 ~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
.-.++++=.+.|..+..||+.++.|.+.||+.
T Consensus 77 ~neL~~ek~~~q~~ieqeik~~q~elEvl~~n 108 (246)
T KOG4657|consen 77 VNELKTEKEARQMGIEQEIKATQSELEVLRRN 108 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555667778888999999999999875
No 369
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=82.23 E-value=4.2 Score=41.92 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008196 553 QAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 553 ~~~l~~E~~~lr~en~~lr~ 572 (574)
..+|.+||++||+||.+|+.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~ 90 (276)
T PRK13922 71 LFDLREENEELKKELLELES 90 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.23 E-value=5.1 Score=45.47 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=61.3
Q ss_pred EEEeCCCcEEEEECCCC-c-eeEEecCC---CCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 10 ASISLSGDLILHNLASG-A-KAAELKDP---NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 10 ASGS~DGtVrIWDl~Tg-~-~l~t~~gh---~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
+.|-.|..|+-||.+-. . .+...+.| .+.-+.|.+-..+| + |+.||.+|.|+|||-.+.. ....+.+-..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~-IvvgS~~GdIRLYdri~~~-AKTAlPgLG~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-Y-IVVGSLKGDIRLYDRIGRR-AKTALPGLGDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-e-EEEeecCCcEEeehhhhhh-hhhcccccCCce
Confidence 45668889999998632 2 22222222 23333665555565 4 9999999999999974322 223477888899
Q ss_pred EEEEEcCCCCEEEEEE
Q 008196 85 AGISFSSDDKAVSSLC 100 (574)
Q Consensus 85 tSVaFSPDG~~LaS~s 100 (574)
..|.-+.||++|+..|
T Consensus 475 ~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 475 KHVDVTADGKWILATC 490 (644)
T ss_pred eeEEeeccCcEEEEec
Confidence 9999999999998866
No 371
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=81.88 E-value=4.8 Score=43.09 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 518 KSIHEDMRNLHIEILRQFHMQETQMSN--------VMSSILENQAELMKEIKSLRKENHQL 570 (574)
Q Consensus 518 ~~~~~d~~nlh~e~lrqf~~~~~e~~~--------~~~~~~~~~~~l~~E~~~lr~en~~l 570 (574)
..+|-++-|-++++=+++..+-++... -|+++.+.+.+|.+||++|++|..+|
T Consensus 255 ak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l 315 (320)
T TIGR01834 255 AKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDL 315 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888999999999988887776644 35777777788888888888877665
No 372
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=81.72 E-value=1.9 Score=33.38 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=24.9
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeE
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAA 30 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~ 30 (574)
|+|...+||.|..||.|.|+.+ +++.++
T Consensus 19 w~P~mdLiA~~t~~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 19 WCPTMDLIALGTEDGEVLVYRL-NWQRIW 46 (47)
T ss_pred ECCCCCEEEEEECCCeEEEEEC-CCcCcc
Confidence 8999999999999999999999 666543
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=81.58 E-value=3.9 Score=31.63 Aligned_cols=29 Identities=10% Similarity=0.315 Sum_probs=25.9
Q ss_pred EEEEEEccCCCeEEEEEeCCCcEEEEeCCC
Q 008196 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 40 vs~LafSPdGr~LLaSgS~DGtVrLWDl~~ 69 (574)
+.+++|+|.. .|||.+..||.|.+|.+..
T Consensus 14 v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 14 VSCMSWCPTM-DLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred EEEEEECCCC-CEEEEEECCCeEEEEECCC
Confidence 4788999997 7899999999999999854
No 374
>PRK11546 zraP zinc resistance protein; Provisional
Probab=81.50 E-value=4.7 Score=38.42 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 008196 536 HMQETQMSNVMSSI---LENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 536 ~~~~~e~~~~~~~~---~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
...+.||..+|..= .+++.+|.+||..||.+..++|-
T Consensus 71 ~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 71 VSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778887321 35678999999999998888774
No 375
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=81.39 E-value=9.6 Score=45.73 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=68.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCe
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~V 84 (574)
++..+.-|+-...+..+|+.+.+......-....+ ..|+. ++ +++.+|...|+|.+-|.++. ..+.++.+|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v-~imR~--Nn-r~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGV-TIMRY--NN-RNLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCce-EEEEe--cC-cEEEeecccceEEeecCCcC-ceeeeeeccccce
Confidence 45567777777788889998777655554333334 55554 33 66999999999999999884 4567899999988
Q ss_pred EEEEEcCCCCEEEEEEecCC
Q 008196 85 AGISFSSDDKAVSSLCWQRA 104 (574)
Q Consensus 85 tSVaFSPDG~~LaS~sWD~s 104 (574)
.. |.-.|..|+++++..+
T Consensus 221 SD--fDv~GNlLitCG~S~R 238 (1118)
T KOG1275|consen 221 SD--FDVQGNLLITCGYSMR 238 (1118)
T ss_pred ee--eeccCCeEEEeecccc
Confidence 55 5568899999887654
No 376
>PRK04654 sec-independent translocase; Provisional
Probab=81.28 E-value=10 Score=38.30 Aligned_cols=54 Identities=6% Similarity=0.187 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 513 LDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENH 568 (574)
Q Consensus 513 l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~ 568 (574)
++.+-+.+|+.++++--|+-|.... .||+..|+.+...+.++..|++...+|.+
T Consensus 32 lGk~irk~R~~~~~vk~El~~El~~--~ELrk~l~~~~~~i~~~~~~lk~~~~el~ 85 (214)
T PRK04654 32 AGLWVRRARMQWDSVKQELERELEA--EELKRSLQDVQASLREAEDQLRNTQQQVE 85 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666666554 36666666666666666666555555544
No 377
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.04 E-value=2.4 Score=32.61 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 546 MSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 546 ~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
.+.+..+.+.|.+|++.||.|.+.|+..
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566666666666666666543
No 378
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=80.77 E-value=3 Score=35.95 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008196 556 LMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 556 l~~E~~~lr~en~~lr~~ 573 (574)
|.++++.|++|+++||+.
T Consensus 70 l~~~~~~l~~~l~~l~~~ 87 (91)
T cd04766 70 LEEELAELRAELDELRAR 87 (91)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666654
No 379
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=80.71 E-value=5 Score=42.45 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=43.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEE
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW 65 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLW 65 (574)
.+.+|+.++.||.|+++|..+|+.+..+..+...+...-.+. ++ + |+.++.||.|..|
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-G-LLVQTRDGDLYAF 376 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-E-EEEEeCCceEEEe
Confidence 466889999999999999999999998886654442332232 33 5 7778889998865
No 380
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=80.25 E-value=21 Score=34.65 Aligned_cols=63 Identities=16% Similarity=0.360 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 008196 509 LEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILEN----QAELMKEIKSLRKENHQLR 571 (574)
Q Consensus 509 ~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~----~~~l~~E~~~lr~en~~lr 571 (574)
|+.-++.++.++++||..|.-|+==.|...+.+++.......-+ ..++..||..||.|.+++|
T Consensus 85 L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 85 LQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666776666666555665555555555433333 3445566667777777665
No 381
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.86 E-value=11 Score=37.92 Aligned_cols=7 Identities=0% Similarity=-0.173 Sum_probs=4.6
Q ss_pred CCCCCCC
Q 008196 481 GGMSQSL 487 (574)
Q Consensus 481 ~~~~~~~ 487 (574)
||++...
T Consensus 78 GWV~~~~ 84 (206)
T PRK10884 78 AWIPLKQ 84 (206)
T ss_pred EeEEHHH
Confidence 8886643
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=79.83 E-value=3 Score=42.71 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=43.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCC-CCeEEEEEEccCCCeEEEEE--eCCCcEEEEeCC
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTA--GDDGTLHLWDTT 68 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~-~~Vvs~LafSPdGr~LLaSg--S~DGtVrLWDl~ 68 (574)
+.+.++++.||.|+.|++.-++.+....+|. ... ..+..+..+ .+|+.+ |.|..++.|++.
T Consensus 114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~-e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 114 SSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG-EELIVVGSD-EFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEeccCCceeeeccccCceeeeeccccCCCc-ceeEEecCC-ceEEeeccccchhhhhcchh
Confidence 4588899999999999998888887777676 333 222333333 446666 777788888773
No 383
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=79.41 E-value=25 Score=33.27 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=34.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 532 LRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 532 lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
.+.-...|..++...+........=.++|++|..||+.||+
T Consensus 56 a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 56 AKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 34455677788888888888888889999999999999997
No 384
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=79.21 E-value=31 Score=35.59 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=58.9
Q ss_pred ccCCCC-EEEEEeCCCcEEEEECCCCceeEEecCCC-CCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC--Ccee---
Q 008196 2 YNCKDE-HLASISLSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPKV--- 74 (574)
Q Consensus 2 FSpDG~-~LASGS~DGtVrIWDl~Tg~~l~t~~gh~-~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~--~~ll--- 74 (574)
|+|+.+ ++|....++.|..++. +|+.++.+.-.. +.. ..|++.-++ .++++--.++.+.++++... ....
T Consensus 29 y~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~-EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 29 YNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDY-EGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSE-EEEEE-STT-EEEEEETTTTEEEEEEE----TT--EEEE
T ss_pred EcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCc-eeEEEECCC-EEEEEEcCCCcEEEEEEeccccccchhhc
Confidence 778755 6666777888888887 688888776433 344 777898877 66776667899999988321 1111
Q ss_pred EEe-----ccCCCCeEEEEEcCCCCEEEEEE
Q 008196 75 SWL-----KQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 75 ~tl-----~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
..+ ..++..+-.+||.+.+..|+.+.
T Consensus 106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp EEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred eEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 111 12455688999999887777764
No 385
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=78.62 E-value=15 Score=37.14 Aligned_cols=74 Identities=14% Similarity=0.252 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 497 GSNFTLQLFQRTLEETLDSFQKSI--HEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 497 ~~~~~~~~~~~~~~e~l~~~~~~~--~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
|-.+ ..++..++.+.++.+-+.+ ++++.-+---.-+-|.-.+.||.++- ..+.+.|+.|++.|+.|.+|||+.|
T Consensus 64 AETI-t~aiT~v~ndsl~~vsk~~vtkaqq~~v~~QQ~~~f~kiRsel~S~e---~sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 64 AETI-TSAITTVLNDSLETVSKELVTKAQQEKVSYQQKVDFAKIRSELVSIE---RSEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHH-HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 3666666666666655543 34444443333444555555555443 2357889999999999999998753
No 386
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.58 E-value=9.9 Score=43.41 Aligned_cols=61 Identities=20% Similarity=0.373 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 512 TLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 512 ~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
.|.+....++.|++-+. ..+-|...-...|-.+|+.+.+++++-.+|+++|++||..|+..
T Consensus 263 slre~~~~L~~D~nK~~-~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 263 SLREKKARLQDDVNKFQ-AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHHHhHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666765443 34455555566677788888888888888899999999988864
No 387
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.49 E-value=4.4 Score=47.70 Aligned_cols=53 Identities=30% Similarity=0.498 Sum_probs=42.8
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 520 IHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 520 ~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+.+||+-|--| |+..+-.+.|++.-+..+...-..|..|+.+||+||++|...
T Consensus 423 LE~dvkkLrae-Lq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~K 475 (697)
T PF09726_consen 423 LEADVKKLRAE-LQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNK 475 (697)
T ss_pred HHHHHHHHHHH-HHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 45555555555 367788999999999888877789999999999999999753
No 388
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=78.44 E-value=19 Score=33.09 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHH--------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 008196 512 TLDSFQKSIHEDMRNLHIEILRQFHMQETQM--------SNVMSSIL----ENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 512 ~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~--------~~~~~~~~----~~~~~l~~E~~~lr~en~~lr~ 572 (574)
.++++...++++++..-=+...+...+..++ ..+|+.+. ++++.|.+.|.+|.++.++|..
T Consensus 45 ~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 45 RFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555566655554444444444444444 44444442 5566677777777776666653
No 389
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.39 E-value=13 Score=41.46 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=65.2
Q ss_pred cCCCCEEEEEeC-CCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCC--eEEEEEeCCCcEEEEeCCCCC-ceeEEec
Q 008196 3 NCKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRS-PKVSWLK 78 (574)
Q Consensus 3 SpDG~~LASGS~-DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr--~LLaSgS~DGtVrLWDl~~~~-~ll~tl~ 78 (574)
+.+|-+++|++. |..++++|+.+-..+..++...-.-..++..++... .+.++.-.++.|.++|-.+.. .....-.
T Consensus 62 S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 62 SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 457778889888 999999999876666555533211111212333211 334455678999999985433 4444556
Q ss_pred cCCCCeEEEEEcCCCCEEEEE
Q 008196 79 QHSAPTAGISFSSDDKAVSSL 99 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~ 99 (574)
-|..+|.++.+++-+..+++.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred cccCceEEEEeeccccceeec
Confidence 799999999999999888774
No 390
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=77.89 E-value=18 Score=31.81 Aligned_cols=62 Identities=18% Similarity=0.351 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 508 TLEETLDSFQKSIHEDMRNLHIEILRQF---HMQETQMSNVMSSILENQAELMKEIKSLRKENHQL 570 (574)
Q Consensus 508 ~~~e~l~~~~~~~~~d~~nlh~e~lrqf---~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~l 570 (574)
-|+..|..++..+ ..|+.||-.++--- ...+.+|..+++++.....++...+++|.++|++.
T Consensus 12 ~I~~~I~~i~~~v-~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~ 76 (117)
T smart00503 12 EIRANIQKISQNV-AELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLEN 76 (117)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 3455666777665 78888998888331 34566777777777777777777778888777643
No 391
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=77.71 E-value=18 Score=37.10 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHH--HHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Q 008196 511 ETLDSFQKSIHEDM--RNLHIEILRQFHMQETQMSNVMSSILENQAEL-------MKEIKSLRKENHQLRQL 573 (574)
Q Consensus 511 e~l~~~~~~~~~d~--~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l-------~~E~~~lr~en~~lr~~ 573 (574)
+.|.||++++--=+ +-=|||=|||||-.-|||..-.....+.+..+ -+|-..||..-+.|||.
T Consensus 50 ~~leey~~em~~lL~ekm~Hveelr~iHadiN~men~ikq~k~~~~~~~~~~~r~~eey~~lk~h~d~lR~~ 121 (286)
T KOG4451|consen 50 ENLEEYELEMGVLLLEKMGHVEELREIHADINEMENDIKQVKALEQHITSCNGRKGEEYMELKSHADELRQI 121 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 45666665542111 12399999999999999999888877666544 35666777777777763
No 392
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=77.70 E-value=26 Score=37.21 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=57.2
Q ss_pred ccCCCCEEEEEe-CCCcEEEEECCC--C----ce-eEEecCCCCCeEEEEEEccCCCeEEEEEeCCC-cEEEEeCCCCCc
Q 008196 2 YNCKDEHLASIS-LSGDLILHNLAS--G----AK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSP 72 (574)
Q Consensus 2 FSpDG~~LASGS-~DGtVrIWDl~T--g----~~-l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DG-tVrLWDl~~~~~ 72 (574)
|+||++.|+.+. ..+.|.-|++.. + .. ...+....+.. ..++...+| +|.+++..+| .|.+|+..+.
T Consensus 170 ~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P-DG~~vDadG-~lw~~a~~~g~~v~~~~pdG~-- 245 (307)
T COG3386 170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP-DGMAVDADG-NLWVAAVWGGGRVVRFNPDGK-- 245 (307)
T ss_pred ECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC-CceEEeCCC-CEEEecccCCceEEEECCCCc--
Confidence 899998766665 457888887752 2 11 12222223333 455677787 4344555554 8999999853
Q ss_pred eeEEeccCCCCeEEEEEc-CCCCEEEEE
Q 008196 73 KVSWLKQHSAPTAGISFS-SDDKAVSSL 99 (574)
Q Consensus 73 ll~tl~gH~~~VtSVaFS-PDG~~LaS~ 99 (574)
++..+.-....+++++|- ++.+.|+..
T Consensus 246 l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 246 LLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred EEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 344455554678999995 655655543
No 393
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.68 E-value=3.1 Score=37.44 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 542 MSNVMSSILENQAELMKEIKSLRKENHQLR 571 (574)
Q Consensus 542 ~~~~~~~~~~~~~~l~~E~~~lr~en~~lr 571 (574)
+..-+++...++++|.+||++|++|.++|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444445555555555555555554
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.67 E-value=4 Score=46.26 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=43.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC
Q 008196 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT 67 (574)
Q Consensus 7 ~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl 67 (574)
-+|+.|+.+|.|++||. .+....+.-..-+..+..|..+.+|+++|+|| +.++.|-|+
T Consensus 442 G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence 49999999999999999 66554433333344447779999998877766 667777776
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=77.64 E-value=29 Score=40.55 Aligned_cols=89 Identities=18% Similarity=0.269 Sum_probs=54.6
Q ss_pred EEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEE--ccCCCeEEEEEeCCCcEEEEeC-----CCCCc---eeE--Ee
Q 008196 10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDY--SRNSRHLLVTAGDDGTLHLWDT-----TGRSP---KVS--WL 77 (574)
Q Consensus 10 ASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~Laf--SPdGr~LLaSgS~DGtVrLWDl-----~~~~~---ll~--tl 77 (574)
+.-+...++.|||...+.......-.....+..++| .|+| +.+++.|..+.|.+|-- ....+ .+. .+
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i 123 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDI 123 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEe
Confidence 333445568899998877544433222334488888 4677 55777788999998853 11111 111 13
Q ss_pred ccCC-CCeEEEEEcCCCCEEEEE
Q 008196 78 KQHS-APTAGISFSSDDKAVSSL 99 (574)
Q Consensus 78 ~gH~-~~VtSVaFSPDG~~LaS~ 99 (574)
..|+ .+|.+.+|.++|..++..
T Consensus 124 ~~~T~h~Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 124 SSHTPHPIGDSIWLKDGTLVVGS 146 (631)
T ss_pred ecCCCCCccceeEecCCeEEEEe
Confidence 3444 468888888888777655
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=77.58 E-value=47 Score=33.89 Aligned_cols=95 Identities=11% Similarity=0.144 Sum_probs=53.2
Q ss_pred ccCCCCEEEEEe---CCCcEEEEECCCCceeEEe-cCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEe-C-CCCCceeE
Q 008196 2 YNCKDEHLASIS---LSGDLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD-T-TGRSPKVS 75 (574)
Q Consensus 2 FSpDG~~LASGS---~DGtVrIWDl~Tg~~l~t~-~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWD-l-~~~~~ll~ 75 (574)
.++||+.+|... ....+.++.. +.....+ .+. .+ ..-.|++++ .+.+....+..++++. . .+....+.
T Consensus 31 vS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~--~l-~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 31 VSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGG--SL-TRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred ECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCC--cc-ccccccCCC-CEEEEEcCCCceEEEEecCCCcceeEE
Confidence 467888777655 3334555544 3333332 222 33 334899997 6555555566666663 2 22111111
Q ss_pred E-eccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 76 W-LKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 76 t-l~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
. ...-...|..+.+||||..++...-+
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~ 132 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVED 132 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEec
Confidence 1 11111279999999999999987643
No 397
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=77.50 E-value=3.7 Score=35.23 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=26.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 534 QFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 534 qf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
..+-++.+|.-=++. .+-.-.|.++|++||+|+++|||
T Consensus 47 ~~~rL~~Dl~in~~g-i~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 47 RIRRLHRDLGINLEG-IALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHhhC
Confidence 333444445444555 34467899999999999999986
No 398
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.47 E-value=3.5 Score=33.18 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008196 548 SILENQAELMKEIKSLRKENHQL 570 (574)
Q Consensus 548 ~~~~~~~~l~~E~~~lr~en~~l 570 (574)
.+...++.+.+||+.||++.+.|
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 399
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=77.44 E-value=35 Score=36.94 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=67.1
Q ss_pred ccCCCCEEEEEeC---CCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeE---
Q 008196 2 YNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS--- 75 (574)
Q Consensus 2 FSpDG~~LASGS~---DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~--- 75 (574)
|+++++.+..+.. ++.|.+.|..+++.+......... ..+++.|+|..++++-..++.|.+.|..+......
T Consensus 123 ~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P--~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~ 200 (381)
T COG3391 123 VDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP--TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVG 200 (381)
T ss_pred ECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc--ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccc
Confidence 6788876666554 688889998888877664433223 45599999987777777899999999866422200
Q ss_pred -EeccCCCCeEEEEEcCCCCEEEEEEec
Q 008196 76 -WLKQHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 76 -tl~gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
....+. .-+.+.++++|..+......
T Consensus 201 ~~~~~~~-~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 201 SLVGVGT-GPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred cccccCC-CCceEEECCCCCEEEEEecc
Confidence 012222 34678899999987776544
No 400
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=77.31 E-value=14 Score=35.78 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=45.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCcee
Q 008196 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll 74 (574)
++.++++++.++.|..||..+|+.++.+.... .+... ....++ . ++.+..|+.|..+|..+.....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~-~~~~~~-~-v~v~~~~~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGA-PVVDGG-R-VYVGTSDGSLYALDAKTGKVLW 100 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSG-EEEETT-E-EEEEETTSEEEEEETTTSCEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccce-eeeccc-c-cccccceeeeEecccCCcceee
Confidence 56778888999999999999999998888532 22111 122233 4 5666688899999986654443
No 401
>PRK13616 lipoprotein LpqB; Provisional
Probab=77.11 E-value=14 Score=42.68 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=47.4
Q ss_pred ccCCCCEEEEEeCC------------CcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeC--
Q 008196 2 YNCKDEHLASISLS------------GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-- 67 (574)
Q Consensus 2 FSpDG~~LASGS~D------------GtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl-- 67 (574)
|++||++|++.... +.+.+.++..+.... ...+.+ ..++|+|||.++++.. ++.|.+--+
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~I-ssl~wSpDG~RiA~i~--~g~v~Va~Vvr 477 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPI-SELQLSRDGVRAAMII--GGKVYLAVVEQ 477 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCc-CeEEECCCCCEEEEEE--CCEEEEEEEEe
Confidence 88998877777532 223223333322211 123345 7779999998866655 467766333
Q ss_pred -CCCCcee---EEe-ccCCCCeEEEEEcCCCCEE
Q 008196 68 -TGRSPKV---SWL-KQHSAPTAGISFSSDDKAV 96 (574)
Q Consensus 68 -~~~~~ll---~tl-~gH~~~VtSVaFSPDG~~L 96 (574)
......+ ..+ .+-...+.++.|..++..+
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~ 511 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV 511 (591)
T ss_pred CCCCceeecccEEeecccCCccccceEecCCEEE
Confidence 2221111 111 1223335778888877744
No 402
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.81 E-value=8.3 Score=29.70 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 547 SSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 547 ~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+.+...-+.|..|+++|.+||+.||..
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888888888888888864
No 403
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=76.74 E-value=2.4 Score=50.28 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=50.5
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~ 68 (574)
|+|..-.||.|=.-|.+.+|...+.+.-.....|...+ ..+.|+++|. .++++..-|.|.+|.+.
T Consensus 67 WHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i-~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 67 WHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPI-QGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cChHHHHHhhccccceeEEEecCCceeeeeccCCCCCc-eeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 66666678888889999999996655433334455555 8889999994 59999999999999885
No 404
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=76.56 E-value=3.2 Score=38.80 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 550 LENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 550 ~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
..+..+|..||++|++||.++|+.
T Consensus 80 E~~k~~L~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEENSRLRRE 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777777777654
No 405
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=76.56 E-value=2.3 Score=49.55 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=65.7
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccC
Q 008196 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~-gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH 80 (574)
|+-+.+.|-+...+|.|+||=+-.|.....+. ..+..++..++|.-||.+ |.-.-.||.|.+=.+.+..+--..+++.
T Consensus 79 WNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~ 157 (1189)
T KOG2041|consen 79 WNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQ 157 (1189)
T ss_pred eccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchh
Confidence 66677788899999999999998888755444 344567788899999966 7777789998887776643222223332
Q ss_pred CCCeEEEEEcCCCCEEEE
Q 008196 81 SAPTAGISFSSDDKAVSS 98 (574)
Q Consensus 81 ~~~VtSVaFSPDG~~LaS 98 (574)
....+.|++|.+.++.
T Consensus 158 --~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 158 --LLAHVLWSEDLEQALF 173 (1189)
T ss_pred --eccceeecccHHHHHh
Confidence 2346778887554443
No 406
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=76.51 E-value=14 Score=36.29 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 506 QRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 506 ~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
||-+=+.|+.|.-.+=.-||-| +.|-|..+.++-.+...=..|..=|.+--.|+++||+++++||..|
T Consensus 79 RR~~~~~l~~y~~~~P~~vRPL-~QlWRe~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL 146 (179)
T PF13942_consen 79 RRQMVDRLNSYSLQFPASVRPL-LQLWREQQVLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQL 146 (179)
T ss_pred HHHHHHHHHHhhhhcCHHHhHH-HHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5555678888888888888876 5677777777767766666777777777789999999999998754
No 407
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=76.09 E-value=8.6 Score=31.10 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 541 QMSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 541 e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
+|..-++.+......|.+|+..|++|+++|+.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666667777777777777777764
No 408
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.47 E-value=10 Score=31.77 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=34.6
Q ss_pred HHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 531 ILRQFHMQETQMSNVM---SSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 531 ~lrqf~~~~~e~~~~~---~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+-|+-...+.++..+. +.+...+.....|+..|+.||+.||+-
T Consensus 17 ~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 17 LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777776 566777888999999999999999975
No 409
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.40 E-value=20 Score=32.54 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=26.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 531 ILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLR 571 (574)
Q Consensus 531 ~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr 571 (574)
|+.++..++.+| .+++++++.|+-||+.||+-.+++.
T Consensus 20 l~~~~~~LK~~~----~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 20 LLEELEELKKQL----QELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555545444 4455558999999999999888764
No 410
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=75.30 E-value=12 Score=38.99 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 540 TQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 540 ~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
.||..=...+..+++.|+.+|++|++|+..||++
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666667778888888888888888876
No 411
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.19 E-value=12 Score=37.66 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.6
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcee
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKA 29 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l 29 (574)
.+++++|++...+|.+++||+.+++++
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 467899999999999999999887764
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=75.12 E-value=10 Score=29.05 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=25.2
Q ss_pred EEEEEEccCCC--eEEEEEeCCCcEEEEeCCC
Q 008196 40 LRVLDYSRNSR--HLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 40 vs~LafSPdGr--~LLaSgS~DGtVrLWDl~~ 69 (574)
+++|.|+|... .||+-+-.-+.|+|+|++.
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 38889998653 5899888999999999974
No 413
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=74.76 E-value=32 Score=41.94 Aligned_cols=90 Identities=16% Similarity=0.245 Sum_probs=57.6
Q ss_pred ccCCCCEEEEEeC---CCcEEEEECCCCceeEEecC---CCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeE
Q 008196 2 YNCKDEHLASISL---SGDLILHNLASGAKAAELKD---PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (574)
Q Consensus 2 FSpDG~~LASGS~---DGtVrIWDl~Tg~~l~t~~g---h~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~ 75 (574)
|.|.|++||+.-. ...|.+|.. +|..-..|.- +....+..|.|+.|+ .+|+..-.|. |.+|-..+..-++.
T Consensus 264 WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 264 WRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred CCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEE
Confidence 8899999999875 445666665 5665555553 234445888999998 5566655554 99998866433322
Q ss_pred Ee--ccCCCCeEEEEEcCCCC
Q 008196 76 WL--KQHSAPTAGISFSSDDK 94 (574)
Q Consensus 76 tl--~gH~~~VtSVaFSPDG~ 94 (574)
.. ......+..+.|+|...
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EEEEccCCCCCCceEECCCCC
Confidence 21 12233455699998543
No 414
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=74.54 E-value=45 Score=32.98 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 008196 554 AELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 554 ~~l~~E~~~lr~en~~lr~~~ 574 (574)
+...+||+.|+++|+||+..|
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346778888999999998754
No 415
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=73.99 E-value=28 Score=32.13 Aligned_cols=61 Identities=18% Similarity=0.382 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 508 TLEETLDSFQKSIHEDMRNLHIEILRQF---HMQETQMSNVMSSILENQAELMKEIKSLRKENHQ 569 (574)
Q Consensus 508 ~~~e~l~~~~~~~~~d~~nlh~e~lrqf---~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~ 569 (574)
-|+..|..++..+ ..|++||-.++--- ...+.+|..+++++.....++...|+.|+++|..
T Consensus 10 ~I~~~i~~i~~~v-~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~ 73 (151)
T cd00179 10 EIRGNIDKISEDV-EELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQ 73 (151)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777776 78899998887442 3466777777778777778888888888877654
No 416
>PRK03100 sec-independent translocase; Provisional
Probab=73.84 E-value=10 Score=35.84 Aligned_cols=37 Identities=24% Similarity=0.132 Sum_probs=15.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 008196 532 LRQFHMQETQMSNVMSSILENQA-ELMKEIKSLRKENH 568 (574)
Q Consensus 532 lrqf~~~~~e~~~~~~~~~~~~~-~l~~E~~~lr~en~ 568 (574)
+|++-.+-.|++.+++.+.+.++ +|-.|++.||++.+
T Consensus 30 ~r~lG~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~ 67 (136)
T PRK03100 30 IRWTARALRQARDYASGATSQLREELGPEFDDLRKPLG 67 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333344444444443332 23345555555333
No 417
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=73.77 E-value=45 Score=40.16 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=39.5
Q ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 525 RNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 525 ~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
...--.++-||.+|-.+|...+++-.-...+-++|.++||.|..|||+
T Consensus 353 ~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a 400 (980)
T KOG0980|consen 353 KEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLA 400 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456888999998899888888777778888999999999988875
No 418
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=73.46 E-value=8.4 Score=37.21 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=54.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 496 QGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 496 ~~~~~~~~~~~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+|--=|+|||=.+|++.=.+-.....+.+++-|..--+.||..+.---.+++.=...+.++.++--.. +-|+||++
T Consensus 56 ~arrRQ~qyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~~~~al~e~~~~~p~~--D~Q~LRqL 131 (157)
T PF04751_consen 56 EARRRQLQYIGKLMREEDPEAIRAALDALKNKSQQETARFHRLERWRDRLIADDDSALTEFLAEYPDA--DRQQLRQL 131 (157)
T ss_dssp HHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHSTTS---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHCChh--hHHHHHHH
Confidence 45566899999999998777777778888899999999999888877777765445556666655443 45666665
No 419
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.30 E-value=12 Score=43.33 Aligned_cols=66 Identities=9% Similarity=0.184 Sum_probs=51.3
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeE-EEEEcCCCCEEEEEEecCCcCEEEec
Q 008196 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA-GISFSSDDKAVSSLCWQRAKPVFIDE 111 (574)
Q Consensus 41 s~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~Vt-SVaFSPDG~~LaS~sWD~sg~viv~e 111 (574)
..+.|+|.- .++|.+-.+|.|.++.+.- .++.++.-|...|+ ++||.|||+.|+.+--| |.+.+.+
T Consensus 24 ~~~ewnP~~-dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd--G~I~L~D 90 (665)
T KOG4640|consen 24 KRIEWNPKM-DLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKD--GTIRLHD 90 (665)
T ss_pred EEEEEcCcc-chhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCCEEEEEecC--CeEEEEE
Confidence 556899984 7899999999999988863 34555665666666 99999999999998755 6665555
No 420
>PRK05255 hypothetical protein; Provisional
Probab=72.77 E-value=11 Score=36.94 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=52.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 495 PQGSNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 495 ~~~~~~~~~~~~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
-+|--=|+|||=.+|++.=.+-..+..+.++|-|..-...||..+.--..++++=-..+.+++++--.+ .-|+||++
T Consensus 66 ~eA~RRqlqyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~~d~al~e~~~~~P~~--DrQ~LRqL 142 (171)
T PRK05255 66 HEARRRQLQYIGKLMRNEDVEPIRAALDKLKNKHNQETARFHKLERWRDRLLAEGDDALTEFLEEYPDA--DRQQLRQL 142 (171)
T ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHCchh--hHHHHHHH
Confidence 456777999999999996446667777888888888888888877766666653233444555444322 33556554
No 421
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=72.37 E-value=21 Score=40.83 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 542 MSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 542 ~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+..-.+-+....+.|.+|+++||+||.|||..
T Consensus 153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~ 184 (546)
T KOG0977|consen 153 LEAEINTLKRRIKALEDELKRLKAENSRLREE 184 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33334445566677788888888888888754
No 422
>PF14645 Chibby: Chibby family
Probab=72.23 E-value=4 Score=37.53 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008196 550 LENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 550 ~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
..+...|.+|+++|++||+.||-
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lkl 92 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKL 92 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888888888888874
No 423
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=72.20 E-value=45 Score=28.82 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhC
Q 008196 535 FHMQETQMSNVMSSILENQAELMKEIKSLRKEN----HQLRQLL 574 (574)
Q Consensus 535 f~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en----~~lr~~~ 574 (574)
.......+..-++.+.+...+|..||+.||+|- +|||.+|
T Consensus 30 LKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 30 LKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777778889999999999994 5777764
No 424
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=72.15 E-value=26 Score=29.71 Aligned_cols=58 Identities=22% Similarity=0.421 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 510 EETLDSFQKSIHEDMRNLHIEILRQFH---MQETQMSNVMSSILENQAELMKEIKSLRKENH 568 (574)
Q Consensus 510 ~e~l~~~~~~~~~d~~nlh~e~lrqf~---~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~ 568 (574)
++.|..++..+ ++|+.||-.+|.-.- ..+.||..++.++.....++..-|+.|+++++
T Consensus 13 ~~~i~~i~~~~-~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 13 REDIDKIKEKL-NELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444 578888888876655 57888889999999889999999999998864
No 425
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.08 E-value=27 Score=36.32 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 509 LEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 509 ~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
|..+|.++|.+.-+.+....-|+=..|+.+-.++..........+..+.+|+..+|...+.|+.
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~ 230 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQA 230 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhh
Confidence 6677777788877788888888888888888888777766666666666676666666666653
No 426
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=72.01 E-value=12 Score=39.02 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 516 FQKSIHEDMRNLHIEILRQFHMQETQMSNVMSS---ILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 516 ~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~---~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+|++.-+|++.-.-||-.-...+-+++..|=+- +..++++-++||++|.++|+|+-++
T Consensus 247 mQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa 307 (330)
T KOG2991|consen 247 MQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA 307 (330)
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544433333333333333322222 2456777889999999999999775
No 427
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.98 E-value=10 Score=34.60 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=26.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 531 ILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLR 571 (574)
Q Consensus 531 ~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr 571 (574)
|+++...++.++. ++.++++.|.-||+-||+..+++.
T Consensus 20 l~~el~~LK~~~~----el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 20 LLKELGALKKQLA----ELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555454444 455558999999999999988873
No 428
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.81 E-value=4.6 Score=46.93 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=50.3
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCce-----eEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG 69 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~-----l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~ 69 (574)
+++..++|.|+..|.|.|+-+..+.. +..+...++..++||+|++++.+ +++|...|+|.+-.+..
T Consensus 85 s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 85 SSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVVLTELDS 155 (726)
T ss_pred cchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccE-EeecCCCceEEEEEech
Confidence 56777889999999999998865322 22222223555699999999977 99999999999987755
No 429
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.72 E-value=58 Score=34.59 Aligned_cols=62 Identities=21% Similarity=0.346 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 512 TLDSFQKSIHEDMRNLHIEILR---QFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 512 ~l~~~~~~~~~d~~nlh~e~lr---qf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
+|++.=..+|.=+.+|--|+.+ +--.||.|+...+.++.+.+..|-.-++.|+.|...+-++
T Consensus 126 ~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~l 190 (300)
T KOG2629|consen 126 QLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQL 190 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5666666666666666555432 3346777888888888888777777777777777666554
No 430
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=71.67 E-value=5.8 Score=41.61 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008196 548 SILENQAELMKEIKSLRKENH 568 (574)
Q Consensus 548 ~~~~~~~~l~~E~~~lr~en~ 568 (574)
++...+++|.+||++||+.++
T Consensus 88 ~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 88 QLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333345569999999998653
No 431
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=71.63 E-value=8 Score=30.38 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008196 550 LENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 550 ~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
...+.+|..||..|+.++.+|++
T Consensus 31 e~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 31 EQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567888888888888888875
No 432
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.59 E-value=18 Score=39.08 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 507 RTLEETLDSFQKSIHEDMRNLHIEI--LRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQL 570 (574)
Q Consensus 507 ~~~~e~l~~~~~~~~~d~~nlh~e~--lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~l 570 (574)
.|+....+.+|+...+||.++..|+ ||+|| +++.+-.++|.+|+++|.+|.+-|
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~slkRt~----------EeL~~G~~kL~~~~etLEqq~~~L 265 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESLKRTE----------EELNIGKQKLVAMKETLEQQLQSL 265 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4455555666777777777776554 45554 344455555556666655555443
No 433
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=71.33 E-value=41 Score=35.74 Aligned_cols=84 Identities=15% Similarity=0.240 Sum_probs=47.5
Q ss_pred EEEECC-CCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCC------CceeEEeccCCCCeEEEEEcC
Q 008196 19 ILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR------SPKVSWLKQHSAPTAGISFSS 91 (574)
Q Consensus 19 rIWDl~-Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~------~~ll~tl~gH~~~VtSVaFSP 91 (574)
.||-+. .+..+..+..+-. +-+.|+||||++.++++=+..+.|+-|++... ......+..+....-.++...
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~-~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLT-IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred eEEEEcCCCCEEEeecCcEE-ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 355554 4555555554332 33677999999877777666788888887421 111112222233344555566
Q ss_pred CCCEEEEEEecC
Q 008196 92 DDKAVSSLCWQR 103 (574)
Q Consensus 92 DG~~LaS~sWD~ 103 (574)
+|.+.+.+.|+.
T Consensus 223 dG~lw~~a~~~g 234 (307)
T COG3386 223 DGNLWVAAVWGG 234 (307)
T ss_pred CCCEEEecccCC
Confidence 666665555554
No 434
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.26 E-value=12 Score=31.57 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008196 550 LENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 550 ~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
..++++|.+++.+|.+||+.|++
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444444444444555543
No 435
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=71.22 E-value=7 Score=42.18 Aligned_cols=16 Identities=25% Similarity=0.059 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 008196 555 ELMKEIKSLRKENHQL 570 (574)
Q Consensus 555 ~l~~E~~~lr~en~~l 570 (574)
.|.+||++||+||.+|
T Consensus 61 ~L~~EN~~Lk~Ena~L 76 (337)
T PRK14872 61 VLETENFLLKERIALL 76 (337)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 436
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=71.17 E-value=8.4 Score=31.60 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008196 551 ENQAELMKEIKSLRKENHQLR 571 (574)
Q Consensus 551 ~~~~~l~~E~~~lr~en~~lr 571 (574)
.-+.+|.+||++|+++|..|-
T Consensus 21 ~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 21 QTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 336789999999999998763
No 437
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.99 E-value=30 Score=41.39 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=59.5
Q ss_pred CCC-CEEEEEeCCCc-----EEEEECCCC------ceeE--EecCC----CCCeEEEEEEccCCCeEEEEEeCCCcEEEE
Q 008196 4 CKD-EHLASISLSGD-----LILHNLASG------AKAA--ELKDP----NEQVLRVLDYSRNSRHLLVTAGDDGTLHLW 65 (574)
Q Consensus 4 pDG-~~LASGS~DGt-----VrIWDl~Tg------~~l~--t~~gh----~~~Vvs~LafSPdGr~LLaSgS~DGtVrLW 65 (574)
-++ ++|++.+.|++ |+|||++.- .+++ .+..+ ...++.+|+.+.+- ..+|+|-.||.|.++
T Consensus 74 ~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~ 152 (933)
T KOG2114|consen 74 LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICY 152 (933)
T ss_pred ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEE
Confidence 344 58888776655 899999643 2331 12222 23466888888885 679999999999998
Q ss_pred eC---CCCCceeEEeccCCCCeEEEEEcCCCCE
Q 008196 66 DT---TGRSPKVSWLKQHSAPTAGISFSSDDKA 95 (574)
Q Consensus 66 Dl---~~~~~ll~tl~gH~~~VtSVaFSPDG~~ 95 (574)
.- +.+..+......-..+|+.++|.-++..
T Consensus 153 ~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 153 KGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred cCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 54 2222233333344568999999888776
No 438
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=70.82 E-value=28 Score=36.94 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 512 TLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVM-SSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 512 ~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~-~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
+|+..|..+.+.||.==-.|+..-+-|+.||...+ ..|..+..+|..|+.+|..=+||+|-
T Consensus 28 qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~ 89 (324)
T PF12126_consen 28 QLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRT 89 (324)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 34444555555555555567777778888888777 67889999999999999999999984
No 439
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=70.76 E-value=4.4 Score=32.77 Aligned_cols=22 Identities=45% Similarity=0.480 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008196 550 LENQAELMKEIKSLRKENHQLR 571 (574)
Q Consensus 550 ~~~~~~l~~E~~~lr~en~~lr 571 (574)
..+..++.+|++.|++|+++||
T Consensus 47 r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4556788889999999999887
No 440
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=70.67 E-value=61 Score=34.41 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=57.1
Q ss_pred CCCC-EEEEEeCCCcEEEEECC-CCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCC--cEEEEeCCCC-CceeEEec
Q 008196 4 CKDE-HLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGR-SPKVSWLK 78 (574)
Q Consensus 4 pDG~-~LASGS~DGtVrIWDl~-Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DG--tVrLWDl~~~-~~ll~tl~ 78 (574)
+++. +|.....||--+|+-+. .+.....+......|...+.|+++++.+.++|..++ .-+||-+... ......+.
T Consensus 245 ~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT 324 (353)
T PF00930_consen 245 PDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT 324 (353)
T ss_dssp TTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS
T ss_pred CCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc
Confidence 4554 44444477765544443 233345666555566677889999888788887643 5566655322 22333343
Q ss_pred cCCCCeEEEEEcCCCCEEEEEEec
Q 008196 79 QHSAPTAGISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 79 gH~~~VtSVaFSPDG~~LaS~sWD 102 (574)
........+.|||++++++-.+..
T Consensus 325 ~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 325 CEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp TTSSTTEEEEE-TTSSEEEEEEES
T ss_pred CCCCCceEEEECCCCCEEEEEEcC
Confidence 333222589999999999876543
No 441
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.65 E-value=8.1 Score=46.31 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=55.9
Q ss_pred eeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCCceeEEeccCCCCeEEEEEcCCCCEEEE-EEecC
Q 008196 28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKAVSS-LCWQR 103 (574)
Q Consensus 28 ~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS-~sWD~ 103 (574)
.+..|..|+... +|++|+-+.++ |+.|...|.|++|++.++ .......+|...|+-|.=+.||..+++ .+|..
T Consensus 1093 ~w~~frd~~~~f-Tc~afs~~~~h-L~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1093 SWRSFRDETALF-TCIAFSGGTNH-LAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred cchhhhccccce-eeEEeecCCce-EEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccC
Confidence 355667666444 88899998744 999999999999999663 234457889999999999999987776 44443
No 442
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=70.61 E-value=80 Score=32.23 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=57.0
Q ss_pred ccCCCCEEEEEeCCCcEEEEE-CCCCcee-EEecCCCCC-eEEEEEEccCCCeEEEEE--eCCCcEEEEeCC--CCC-c-
Q 008196 2 YNCKDEHLASISLSGDLILHN-LASGAKA-AELKDPNEQ-VLRVLDYSRNSRHLLVTA--GDDGTLHLWDTT--GRS-P- 72 (574)
Q Consensus 2 FSpDG~~LASGS~DGtVrIWD-l~Tg~~l-~t~~gh~~~-Vvs~LafSPdGr~LLaSg--S~DGtVrLWDl~--~~~-~- 72 (574)
|+++|...+....+...+++. ...+... ..+...... .+..++++|||.++.+.. ..++.|.+--+. ... .
T Consensus 73 ~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~ 152 (253)
T PF10647_consen 73 WDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR 152 (253)
T ss_pred ccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence 778887777776677777663 3334332 222222111 448889999998866655 335667666551 111 1
Q ss_pred e----eEEeccCCCCeEEEEEcCCCCEEEEEE
Q 008196 73 K----VSWLKQHSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 73 l----l~tl~gH~~~VtSVaFSPDG~~LaS~s 100 (574)
. +.........+..++|..++.+++...
T Consensus 153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred eeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 1 111223345688999988887666553
No 443
>TIGR02268 Myxococcus xanthus paralogous family TIGR02268. This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=70.44 E-value=3.6 Score=43.50 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 548 SILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 548 ~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
.|..++.+++.|+++||+||+|||+.
T Consensus 135 s~~~E~~~~r~~~~~~~~e~~~lr~~ 160 (295)
T TIGR02268 135 SYQQEVVELRARNQLLEEENARLRRQ 160 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555678888888999999998863
No 444
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=70.12 E-value=35 Score=29.34 Aligned_cols=59 Identities=14% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 512 TLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQL 570 (574)
Q Consensus 512 ~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~l 570 (574)
...+++..+...+.++.+..++.+.....-+...+......++.+.+|++.+|++..+-
T Consensus 27 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 27 ERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555666666666555566666666666666666666666655443
No 445
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=69.73 E-value=50 Score=27.73 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 502 LQLFQRTLEETLDSFQKSIHE---DMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKEN 567 (574)
Q Consensus 502 ~~~~~~~~~e~l~~~~~~~~~---d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en 567 (574)
++.|+.+|.|- .+++.++++ .|+--+-+ +-.|+.++....+.+..++++-++=|.+|+.||
T Consensus 5 ~~~l~~LL~EN-~~LKealrQ~N~~Mker~e~----l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~EN 68 (68)
T PF11577_consen 5 QQQLQELLQEN-QDLKEALRQNNQAMKERFEE----LLAWQEKQKEEREFLERKFQEARELVERLKEEN 68 (68)
T ss_dssp --HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 46677777774 233444433 33333323 457899999999999999999999999999998
No 446
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=69.72 E-value=1.5 Score=44.39 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 540 TQMSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 540 ~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
.|+..-+..+..-++-|+.||++||+||+||+.
T Consensus 125 EEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~a 157 (243)
T PF08961_consen 125 EEQATKIADLRRLVEFLLAENERLRRENKQLKA 157 (243)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777788888999999999999999974
No 447
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=69.72 E-value=21 Score=32.45 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=27.1
Q ss_pred HHHHhHHHHHHHhhhHHH--------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 008196 523 DMRNLHIEILRQFHMQET--------QMSNVMSSIL----ENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 523 d~~nlh~e~lrqf~~~~~--------e~~~~~~~~~----~~~~~l~~E~~~lr~en~~lr~ 572 (574)
|-+-+--||+||.+..+. .|+.|++.+. .+.++|.++|++||++...|-.
T Consensus 43 Eak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 43 EAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555444333 3445555433 2346777778888777666643
No 448
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=69.64 E-value=19 Score=25.65 Aligned_cols=25 Identities=12% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEccCCCeEEEEEeCC--CcEEEE
Q 008196 41 RVLDYSRNSRHLLVTAGDD--GTLHLW 65 (574)
Q Consensus 41 s~LafSPdGr~LLaSgS~D--GtVrLW 65 (574)
....|+|||++++.++..+ |.-.||
T Consensus 12 ~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4458999999999998888 887777
No 449
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=69.60 E-value=8.7 Score=33.66 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008196 553 QAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 553 ~~~l~~E~~~lr~en~~lr~ 572 (574)
+....-||.+||+||.|||.
T Consensus 46 vtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455677778888877775
No 450
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.50 E-value=9.3 Score=34.39 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 547 SSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 547 ~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
..+..+++++.+||++|++||++|++.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~e 56 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAE 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666677777777777777777653
No 451
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=69.42 E-value=9.6 Score=34.72 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 544 NVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 544 ~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
.-++-+.+.+.+|.+-|.+|++||.=||.+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455667778888888888888877764
No 452
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=69.25 E-value=7.4 Score=34.63 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 543 SNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 543 ~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
..++=.+++++++|++|+++|++ |||+.
T Consensus 70 ialvl~LLd~i~~Lr~el~~L~~---~l~~~ 97 (101)
T PRK10265 70 IAVALTLLDEIAHLKQENRLLRQ---RLSRF 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 33444445555566666666655 55443
No 453
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=69.24 E-value=30 Score=33.45 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=37.1
Q ss_pred CCCcEEEEECCCCceeEEecCCC--CCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC
Q 008196 14 LSGDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS 71 (574)
Q Consensus 14 ~DGtVrIWDl~Tg~~l~t~~gh~--~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~ 71 (574)
.+|+|..||..+|+.++...-.. ... .+ ...+++.+ ++.++.++.|..||..+..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~-~~-~~~~~~~~-v~~~~~~~~l~~~d~~tG~ 57 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGP-VA-TAVPDGGR-VYVASGDGNLYALDAKTGK 57 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSE-EE-TEEEETTE-EEEEETTSEEEEEETTTSE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCc-cc-eEEEeCCE-EEEEcCCCEEEEEECCCCC
Confidence 37899999999999998886421 222 11 12223335 6666899999999995543
No 454
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=69.22 E-value=8.5 Score=44.06 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 538 QETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 538 ~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
.+..+..+-+|++.-|-+-.+|+++|.+||..||++|
T Consensus 231 ~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr~ll 267 (980)
T KOG0447|consen 231 DKEKIDQLQEELLHTQLKYQRILERLEKENKELRKLV 267 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444555556666667788889999999999999874
No 455
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=69.22 E-value=21 Score=32.49 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=22.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 529 IEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQ 569 (574)
Q Consensus 529 ~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~ 569 (574)
||+.||-..|=-+-+-+| +...--.-|.+||..||.|.+|
T Consensus 14 lD~aRq~e~~FlqKr~~L-S~~kpe~~lkEEi~eLK~ElqR 53 (106)
T PF11594_consen 14 LDVARQMEAFFLQKRFEL-SAYKPEQVLKEEINELKEELQR 53 (106)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHH
Confidence 677777555544444444 2233334566667777766655
No 456
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=68.10 E-value=18 Score=40.08 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 538 QETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 538 ~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
++.+++.+--+|.+++..+++|-+..|+||+||-+.|
T Consensus 265 lrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL 301 (552)
T KOG2129|consen 265 LRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKL 301 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556777777788888888888888888888887654
No 457
>PHA02557 22 prohead core protein; Provisional
Probab=68.07 E-value=43 Score=35.08 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh----hhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 503 QLFQRTLEETLDSFQKSIHEDMRNLHIEILRQF----HMQ--------ETQMSNVMSSILENQAELMKEIKSLRKENHQL 570 (574)
Q Consensus 503 ~~~~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf----~~~--------~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~l 570 (574)
+||+-.+++-|.+=+..+-+.|++ ||.--| +.+ -.|.-.++++..+++++..+|+++|..||++|
T Consensus 91 ~~l~~~~~eW~~ENk~Av~~~IKa---em~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l 167 (271)
T PHA02557 91 KYLDHLAKEWLAENKLAVDRGIKA---ELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVAL 167 (271)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777766666665554 333322 221 23666788899999999999999999999999
Q ss_pred Hhh
Q 008196 571 RQL 573 (574)
Q Consensus 571 r~~ 573 (574)
+.+
T Consensus 168 ~e~ 170 (271)
T PHA02557 168 EEY 170 (271)
T ss_pred HHH
Confidence 865
No 458
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=67.43 E-value=17 Score=33.93 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=36.1
Q ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 526 NLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQ 569 (574)
Q Consensus 526 nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~ 569 (574)
-.|.+.|+.+...+.+++.-+.++..+++.|.+|+++||+|-=.
T Consensus 42 ~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~ 85 (126)
T PF07028_consen 42 KKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLE 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888887543
No 459
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.39 E-value=25 Score=41.06 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 514 DSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 514 ~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
.+.-++.|++|.-=|-++|-|--...- ....+++..+++++|+.||+++|..|..+++.
T Consensus 85 r~ldrqLh~qv~~Rh~allaQat~~~~-~d~~l~sl~~~v~~lqs~i~riknd~~epyk~ 143 (797)
T KOG2211|consen 85 RELDRQLHAQVLKRHMALLAQATEELF-EDLELRSLLVKVAELQSEIKRIKNDNKEPYKI 143 (797)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 334677788888888888877544322 34556777888999999999999999887753
No 460
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=67.16 E-value=34 Score=36.17 Aligned_cols=69 Identities=20% Similarity=0.337 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHh
Q 008196 502 LQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSIL--------ENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 502 ~~~~~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~--------~~~~~l~~E~~~lr~en~~lr~ 572 (574)
+++--.+.+|+..++-.+ +|-..+|-.+|..--..+.++..+++.++ .++++|.++|..||+|+.+|+|
T Consensus 217 ~d~Wi~~ae~~~~~~~~S--~ef~~~~g~~~~a~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~Lkr 293 (293)
T PF09712_consen 217 YDIWIDAAEEAYEELFRS--EEFAQAYGQLVNALMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRREVRALKR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555555555544321 22233333333333333444555555554 5689999999999999999986
No 461
>PRK00708 sec-independent translocase; Provisional
Probab=67.12 E-value=15 Score=37.08 Aligned_cols=21 Identities=14% Similarity=0.466 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 008196 510 EETLDSFQKSIHEDMRNLHIE 530 (574)
Q Consensus 510 ~e~l~~~~~~~~~d~~nlh~e 530 (574)
+....+||.++.++++..-++
T Consensus 40 R~~a~e~r~~~~e~~~~~eld 60 (209)
T PRK00708 40 RKMAGEFRRQFDEALREAELD 60 (209)
T ss_pred HHHHHHHHHHHHHHhhhhhHH
Confidence 344556666666666554333
No 462
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.04 E-value=43 Score=33.33 Aligned_cols=66 Identities=15% Similarity=0.311 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 498 SNFTLQLFQRTLEE--TLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLR 564 (574)
Q Consensus 498 ~~~~~~~~~~~~~e--~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr 564 (574)
.+|-.+.+|.-|.+ .+-+-+....++++.++..|.+. +....++...|.++..++-+|.++.+.|+
T Consensus 84 ~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 84 HGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-EAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred cCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777 34566778889999999998887 44555666666666666666665543333
No 463
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=67.03 E-value=45 Score=35.80 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=15.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEe
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAEL 32 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~ 32 (574)
+..++.++.+|.+..+|..+|+.++..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 334445555666666666666655443
No 464
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=66.99 E-value=43 Score=38.82 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred ccCCCC----EEEEEeCCCcEEEEECCC---------CceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC
Q 008196 2 YNCKDE----HLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (574)
Q Consensus 2 FSpDG~----~LASGS~DGtVrIWDl~T---------g~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~ 68 (574)
|.|-+. -|...-....|.||.+-. ......+...-.-.-..+.|+|.. .+|+.--.+..-.++++.
T Consensus 64 W~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~ 142 (671)
T PF15390_consen 64 WAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVH 142 (671)
T ss_pred ecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeee
Q ss_pred CCCceeEEeccCCCCeEEEEEcCCCCEEEE--------EEecCCcCEEEeccCCC
Q 008196 69 GRSPKVSWLKQHSAPTAGISFSSDDKAVSS--------LCWQRAKPVFIDETTCK 115 (574)
Q Consensus 69 ~~~~ll~tl~gH~~~VtSVaFSPDG~~LaS--------~sWD~sg~viv~e~~~s 115 (574)
.....+..-....+.|.|.||.+||.+|+. -.||...+.......|.
T Consensus 143 ~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcP 197 (671)
T PF15390_consen 143 CDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCP 197 (671)
T ss_pred eCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcce
No 465
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=66.98 E-value=33 Score=36.25 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 501 TLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRK 565 (574)
Q Consensus 501 ~~~~~~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~ 565 (574)
+|+-+..-|+|+|..|++.++ .+|-+..++|..++.++..+.+. .+++.+|.+|+..|.+
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~----~~~~~~~~~~~~L~~~l~~l~~~-~~~~~~l~~~~~~L~~ 62 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLE----ESFEQRSEEFGSLKEQLKQLSEA-NGEIQQLSQEASNLTS 62 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
No 466
>smart00338 BRLZ basic region leucin zipper.
Probab=66.85 E-value=10 Score=30.65 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 546 MSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 546 ~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
+..+..++..|.+||..|+.++++|++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666654
No 467
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=66.83 E-value=1.4e+02 Score=32.30 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=63.1
Q ss_pred cCCCC-EEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEe--CCCcEEEEeCCCCCceeEEecc
Q 008196 3 NCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQ 79 (574)
Q Consensus 3 SpDG~-~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS--~DGtVrLWDl~~~~~ll~tl~g 79 (574)
++.+. .++....++.|.+.|..+...+....-.. .. ..++|+++++.+.++-. .+++|.+.|..+.........+
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P-~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG 159 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GP-VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG 159 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CC-ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC
Confidence 45566 44445457889999987777666555333 33 45699999977666666 4788888888665444332333
Q ss_pred CCCCeEEEEEcCCCCEEEEEE
Q 008196 80 HSAPTAGISFSSDDKAVSSLC 100 (574)
Q Consensus 80 H~~~VtSVaFSPDG~~LaS~s 100 (574)
. .+ ..+++.|+|..++..-
T Consensus 160 ~-~P-~~~a~~p~g~~vyv~~ 178 (381)
T COG3391 160 N-TP-TGVAVDPDGNKVYVTN 178 (381)
T ss_pred C-Cc-ceEEECCCCCeEEEEe
Confidence 2 34 8899999999777754
No 468
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.73 E-value=14 Score=41.18 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=36.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCC
Q 008196 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~ 68 (574)
|.+|+..+.+ .|.+||..+++.++.+... .+ ..|.|+++|.. ++-.+ +..+.|++..
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~v-k~V~Ws~~g~~-val~t-~~~i~il~~~ 173 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AV-KYVIWSDDGEL-VALVT-KDSIYILKYN 173 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E--EEEEE-TTSSE-EEEE--S-SEEEEEE-
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CC-cEEEEECCCCE-EEEEe-CCeEEEEEec
Confidence 6777776555 7999999999999998843 24 67799999855 55544 4577777763
No 469
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.69 E-value=56 Score=27.72 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 008196 557 MKEIKSLRKENHQLRQ 572 (574)
Q Consensus 557 ~~E~~~lr~en~~lr~ 572 (574)
..-+++|++||+||.+
T Consensus 45 q~~reaL~~eneqlk~ 60 (79)
T COG3074 45 QHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334466777776643
No 470
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=66.64 E-value=26 Score=36.59 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 512 TLDSFQKSIHEDMRNLHIEILRQFHMQETQ-MSNVMSSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 512 ~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e-~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
.|.=|.++|.++|...|.+...++..+... ...-+..+..+.++|.+|++.++++.+++++
T Consensus 102 ~l~iF~~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 102 ELKIFEKEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578899999999888888777665443 4445555555566666666666666666554
No 471
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=66.56 E-value=30 Score=38.86 Aligned_cols=74 Identities=7% Similarity=0.128 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008196 498 SNFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQL 573 (574)
Q Consensus 498 ~~~~~~~~~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~ 573 (574)
.-++++++-..|+|.|.+.|.++-. .|.--|.++.++..-.|.+..+.++..+...-..+...+-+|.+.++|.
T Consensus 361 ~~IA~dll~~yL~~~l~~~~~al~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~eqq 434 (451)
T PRK13723 361 DYIGYDILLQYIQELIQQARAMLAT--GNYPEAVMDHLRENLNQAQRQIAAFQSQVQVQQDALLVVDRQMSYMRQQ 434 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888889988888888743 3344455555555555555555444443333233444444445555543
No 472
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=66.11 E-value=40 Score=37.05 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=39.3
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCCCcEEEEeCCCCC
Q 008196 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS 71 (574)
Q Consensus 17 tVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~DGtVrLWDl~~~~ 71 (574)
.|+||+. .|+.+..+.-..+.+ -++.|..+. . |++-..||.|++||+.+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~i-v~~~wt~~e-~-LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRI-VGMGWTDDE-E-LVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCE-EEEEECCCC-e-EEEEEcCCEEEEEeCCCce
Confidence 5899998 788888877555566 566998864 6 6667799999999997643
No 473
>PRK10115 protease 2; Provisional
Probab=66.02 E-value=78 Score=37.29 Aligned_cols=98 Identities=9% Similarity=-0.009 Sum_probs=55.2
Q ss_pred ccCCCCEEEEEe-----CCCcEEEEECCCCceeEEecCCCCCeEEEEEEccCCCeEEEEEeCC-----CcEEEEeCCCCC
Q 008196 2 YNCKDEHLASIS-----LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRS 71 (574)
Q Consensus 2 FSpDG~~LASGS-----~DGtVrIWDl~Tg~~l~t~~gh~~~Vvs~LafSPdGr~LLaSgS~D-----GtVrLWDl~~~~ 71 (574)
|+|||++||.+- ...+|+|.|+.+|..+...-... . ..++|.+|++.++++...+ ..|.+|++.+..
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 689999888654 34458899998876432221111 1 3369999998777776543 357777875431
Q ss_pred -ceeEEeccCCCCeE-EEEEcCCCCEEEEEEec
Q 008196 72 -PKVSWLKQHSAPTA-GISFSSDDKAVSSLCWQ 102 (574)
Q Consensus 72 -~ll~tl~gH~~~Vt-SVaFSPDG~~LaS~sWD 102 (574)
.....+........ .+..+.|+++++..+..
T Consensus 211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~ 243 (686)
T PRK10115 211 SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS 243 (686)
T ss_pred hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC
Confidence 11112333222333 23334578877664433
No 474
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=65.84 E-value=14 Score=38.45 Aligned_cols=28 Identities=36% Similarity=0.433 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 547 SSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 547 ~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
+++..+..+|.+||++||.+++||++.|
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999999998764
No 475
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=65.46 E-value=23 Score=36.40 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=48.4
Q ss_pred CCEEEEEeCCCcEEEEECCC-CceeEEecCCCCCeEEEEEEccCCCe--EEEEEeCCCcEEEEeCCCCCceeEEeccCC-
Q 008196 6 DEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRH--LLVTAGDDGTLHLWDTTGRSPKVSWLKQHS- 81 (574)
Q Consensus 6 G~~LASGS~DGtVrIWDl~T-g~~l~t~~gh~~~Vvs~LafSPdGr~--LLaSgS~DGtVrLWDl~~~~~ll~tl~gH~- 81 (574)
+.-|++|..||.|.+|+..- |.....+......+ .| --|.++. +..+++.||.|+.|.+.-. ..+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i-~~--~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI-DL--GIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccc-ee--ccccccccceeEEeccCCceeeeccccC-ceeeeeccccC
Confidence 34688999999999998841 11111111112223 22 2343333 7889999999999998542 2333455566
Q ss_pred CCeEEEEEcCCCCEE
Q 008196 82 APTAGISFSSDDKAV 96 (574)
Q Consensus 82 ~~VtSVaFSPDG~~L 96 (574)
..+.....+-.++.|
T Consensus 146 ~~~e~~ivv~sd~~i 160 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFL 160 (238)
T ss_pred CCcceeEEecCCceE
Confidence 333333333333333
No 476
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=65.46 E-value=9.5 Score=31.39 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 541 QMSNVMSSILENQAELMKEIKSLRKENHQL 570 (574)
Q Consensus 541 e~~~~~~~~~~~~~~l~~E~~~lr~en~~l 570 (574)
++..-++.+..++++|.+|++.|++|.++|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555666677777777777777776
No 477
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=65.26 E-value=29 Score=29.53 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 546 MSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 546 ~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
++.+...+-+|.-|++.|++|+++++++|
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l 66 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLL 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566778999999999999888764
No 478
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=65.25 E-value=10 Score=30.21 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 547 SSILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 547 ~~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
++....+++|..||+.||.|.+++|-
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456678888999999998888874
No 479
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=64.94 E-value=90 Score=28.69 Aligned_cols=20 Identities=0% Similarity=0.054 Sum_probs=9.4
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q 008196 530 EILRQFHMQETQMSNVMSSI 549 (574)
Q Consensus 530 e~lrqf~~~~~e~~~~~~~~ 549 (574)
+++++|+.-+.++-.+.+.+
T Consensus 98 ~~~k~~~~~~~~yd~~~~k~ 117 (194)
T cd07307 98 KRRKKLDKARLDYDAAREKL 117 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555444444444443
No 480
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=64.71 E-value=25 Score=39.57 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=39.3
Q ss_pred CCCEEEEEeCCCcEEEEECCC----CceeEEec-CC--------------------CCCeEEEEEEcc---CCCeEEEEE
Q 008196 5 KDEHLASISLSGDLILHNLAS----GAKAAELK-DP--------------------NEQVLRVLDYSR---NSRHLLVTA 56 (574)
Q Consensus 5 DG~~LASGS~DGtVrIWDl~T----g~~l~t~~-gh--------------------~~~Vvs~LafSP---dGr~LLaSg 56 (574)
+...++.+..||.+....... +....... .. ...+...++++. +++.+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566788888999988887764 22221111 00 112334445555 234679999
Q ss_pred eCCCcEEEEeCCCCCc
Q 008196 57 GDDGTLHLWDTTGRSP 72 (574)
Q Consensus 57 S~DGtVrLWDl~~~~~ 72 (574)
+.|+++|+||+.+.+.
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999977544
No 481
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.26 E-value=33 Score=36.69 Aligned_cols=91 Identities=13% Similarity=0.204 Sum_probs=58.3
Q ss_pred EEEeCCCc-EEEEECCCCceeEEecCCCCC-eEEEEEEccCCCeEEEEEe----CCCcEEEEeCCCCCceeEEeccCCCC
Q 008196 10 ASISLSGD-LILHNLASGAKAAELKDPNEQ-VLRVLDYSRNSRHLLVTAG----DDGTLHLWDTTGRSPKVSWLKQHSAP 83 (574)
Q Consensus 10 ASGS~DGt-VrIWDl~Tg~~l~t~~gh~~~-Vvs~LafSPdGr~LLaSgS----~DGtVrLWDl~~~~~ll~tl~gH~~~ 83 (574)
+-+-.-|+ ..|+|.........+...++. .+-.-.|||||+.|.+|-. .-|.|-|||.......+..+..|.-.
T Consensus 84 afARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiG 163 (366)
T COG3490 84 AFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIG 163 (366)
T ss_pred EEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcC
Confidence 33334444 235666555544444322222 1122279999976555532 23779999997655666678888888
Q ss_pred eEEEEEcCCCCEEEEEE
Q 008196 84 TAGISFSSDDKAVSSLC 100 (574)
Q Consensus 84 VtSVaFSPDG~~LaS~s 100 (574)
-..|.|.+||+.++.+.
T Consensus 164 pHev~lm~DGrtlvvan 180 (366)
T COG3490 164 PHEVTLMADGRTLVVAN 180 (366)
T ss_pred cceeEEecCCcEEEEeC
Confidence 89999999999998864
No 482
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=64.20 E-value=38 Score=29.25 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 531 ILRQFHMQETQMSNVMSS---ILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 531 ~lrqf~~~~~e~~~~~~~---~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
+-++.+..+.||..+|.. =.++++.+.+|+..++.|..+.|.
T Consensus 64 ~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~ 108 (125)
T PF13801_consen 64 LRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQERL 108 (125)
T ss_dssp HHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555511 124566777777777777766653
No 483
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.15 E-value=13 Score=41.82 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 547 SSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 547 ~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
.++..++++|.+|+++|+...++|-++|
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777775543
No 484
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=64.07 E-value=32 Score=31.79 Aligned_cols=62 Identities=11% Similarity=0.260 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 008196 501 TLQLFQRTLEETLDSFQKSIHEDM----RNLHIEILRQFHMQETQMSNVMSSILENQAE-LMKEIKSLR 564 (574)
Q Consensus 501 ~~~~~~~~~~e~l~~~~~~~~~d~----~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~-l~~E~~~lr 564 (574)
++..|++.++++++-+|.|+++-+ .-++|||+..+|. .+-+..++.+...+++ =.++|+.|+
T Consensus 7 ~y~~l~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~--~~A~~F~~~f~~~~~~~~~~~i~~L~ 73 (133)
T cd08044 7 AYSKLRKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHL--EEAKSFFERFSGDFEDSHSEDIKKLS 73 (133)
T ss_pred HHHHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence 468899999999999999999875 4568999999984 5567788888877755 344466654
No 485
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=64.06 E-value=83 Score=35.49 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008196 481 GGMSQSLKSPQPDPPQGSNFTLQLFQRTLEETLDSFQ---KSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELM 557 (574)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~---~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~ 557 (574)
|+.+-|+- -++.--....-|.=||.+|+-+||-.| ++|..|-.-|-+|+|| +.|+++-++..+..-.+|+
T Consensus 486 gG~~gp~i--~ada~SS~eTll~niq~llkva~dnar~qekQiq~Ek~ELkmd~lr-----erelreslekql~~ErklR 558 (641)
T KOG3915|consen 486 GGFPGPFI--FADALSSIETLLTNIQGLLKVAIDNARAQEKQIQLEKTELKMDFLR-----ERELRESLEKQLAMERKLR 558 (641)
T ss_pred CCCCCccc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 44444441 234433344456778899999888765 4566677777777776 5667776666665545554
Q ss_pred HHH-HHHHHHH
Q 008196 558 KEI-KSLRKEN 567 (574)
Q Consensus 558 ~E~-~~lr~en 567 (574)
.-+ +|||+|-
T Consensus 559 ~~~qkr~kkEk 569 (641)
T KOG3915|consen 559 AIVQKRLKKEK 569 (641)
T ss_pred HHHHHHHHHHH
Confidence 433 3555554
No 486
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=63.69 E-value=24 Score=27.41 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 538 QETQMSNVMSSILENQAELMKEIKSLRKE 566 (574)
Q Consensus 538 ~~~e~~~~~~~~~~~~~~l~~E~~~lr~e 566 (574)
|-.|+..+|.++.+.+++-++|+.-||+=
T Consensus 9 ql~~l~~~l~elk~~l~~Q~kE~~~LRnt 37 (45)
T PF11598_consen 9 QLSELNQMLQELKELLRQQIKETRFLRNT 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666666666653
No 487
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=63.67 E-value=63 Score=32.92 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 501 TLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 501 ~~~~~~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
..+.++.=+++.|..-....+..++.+-.++.+. +..-..++..++.....+++++++++.+|++|++.|..|
T Consensus 35 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 35 ENEELRRRIEEILESDSNGQLLEIQQLKREIEEL-RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=63.54 E-value=23 Score=30.97 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 538 QETQMSNVMSSILENQAELMKEIKSLRKENHQ 569 (574)
Q Consensus 538 ~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~ 569 (574)
.+.++..-++++.+.+...-+|++.||+||..
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 44455556666677788889999999999974
No 489
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=63.44 E-value=14 Score=29.86 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008196 550 LENQAELMKEIKSLRKEN 567 (574)
Q Consensus 550 ~~~~~~l~~E~~~lr~en 567 (574)
...+..|.+|+.+|+.||
T Consensus 46 ~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 46 KKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 334555666666666665
No 490
>PHA02713 hypothetical protein; Provisional
Probab=63.33 E-value=40 Score=38.51 Aligned_cols=113 Identities=11% Similarity=0.053 Sum_probs=54.1
Q ss_pred cEEEEECCCCcee--EEecCCCCCeEEEEEEccCCCeEEEEEeCC------CcEEEEeCCC--CCceeEEeccCCCCeEE
Q 008196 17 DLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTG--RSPKVSWLKQHSAPTAG 86 (574)
Q Consensus 17 tVrIWDl~Tg~~l--~t~~gh~~~Vvs~LafSPdGr~LLaSgS~D------GtVrLWDl~~--~~~ll~tl~gH~~~VtS 86 (574)
.|..||..+.+.. ..+...... .+++ .-++ ++.+.||.+ ..|..||... ....+..+......+..
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~--~~~~-~~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIR--PGVV-SHKD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred eEEEECCCCCeEeecCCCCccccc--CcEE-EECC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 4667887665432 222111111 1111 2234 666667654 2467899865 33333333333333333
Q ss_pred EEEcCCCCEEEEEEecCCcCEEEeccCCCcceeEecccCCCeEeccCCCC
Q 008196 87 ISFSSDDKAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 136 (574)
Q Consensus 87 VaFSPDG~~LaS~sWD~sg~viv~e~~~s~e~aLlg~~~~dsVi~PDPlp 136 (574)
+.+ +|++.+.++++....+-..+ ....+...+...+....+|.+-+|
T Consensus 509 ~~~--~~~iyv~Gg~~~~~~~e~yd-~~~~~W~~~~~~~~~~~~~~~~~~ 555 (557)
T PHA02713 509 ILH--DNTIMMLHCYESYMLQDTFN-VYTYEWNHICHQHSNSYIMHNILP 555 (557)
T ss_pred EEE--CCEEEEEeeecceeehhhcC-cccccccchhhhcCCceEeecccc
Confidence 444 78888888887632211111 122333344555555666655544
No 491
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=63.33 E-value=17 Score=33.02 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 008196 548 SILENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 548 ~~~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
....++++|.+|+++|+.||+=|..
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777766654
No 492
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=63.17 E-value=25 Score=28.90 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008196 550 LENQAELMKEIKSLRKENHQLRQ 572 (574)
Q Consensus 550 ~~~~~~l~~E~~~lr~en~~lr~ 572 (574)
..++++|.++++.|++||++|.+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555543
No 493
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=63.15 E-value=18 Score=31.28 Aligned_cols=13 Identities=0% Similarity=0.197 Sum_probs=4.7
Q ss_pred HHhhhHHHHHHHH
Q 008196 533 RQFHMQETQMSNV 545 (574)
Q Consensus 533 rqf~~~~~e~~~~ 545 (574)
+..+..+.|+..+
T Consensus 59 ~~~~~~r~~~~~~ 71 (125)
T PF13801_consen 59 QEMRALRQELRAA 71 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 494
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=63.13 E-value=39 Score=37.60 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=32.0
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEecCCCCC
Q 008196 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQ 38 (574)
Q Consensus 3 SpDG~~LASGS~DGtVrIWDl~Tg~~l~t~~gh~~~ 38 (574)
+|++++.|+...=|.|.|+|+.++..++.+++..+.
T Consensus 316 sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 316 SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 688999999888999999999999999999987654
No 495
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.00 E-value=17 Score=41.91 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008196 542 MSNVMSSILENQAELMKEIKSLRKENHQLR 571 (574)
Q Consensus 542 ~~~~~~~~~~~~~~l~~E~~~lr~en~~lr 571 (574)
+...++.+.+.+.+|..||++|++|++.|+
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~ 456 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLE 456 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 496
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=62.89 E-value=11 Score=27.15 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008196 554 AELMKEIKSLRKENHQLR 571 (574)
Q Consensus 554 ~~l~~E~~~lr~en~~lr 571 (574)
..|..|.+.||+.+|||.
T Consensus 4 qkL~sekeqLrrr~eqLK 21 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLK 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555554
No 497
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=62.54 E-value=1.7e+02 Score=31.46 Aligned_cols=68 Identities=13% Similarity=0.279 Sum_probs=41.8
Q ss_pred ccCCCCEEEEEeCC-----------CcEEEEECCCCce--eEEecCCCCCe-EEEEEEccCCCeEEEEEeCCCc---EEE
Q 008196 2 YNCKDEHLASISLS-----------GDLILHNLASGAK--AAELKDPNEQV-LRVLDYSRNSRHLLVTAGDDGT---LHL 64 (574)
Q Consensus 2 FSpDG~~LASGS~D-----------GtVrIWDl~Tg~~--l~t~~gh~~~V-vs~LafSPdGr~LLaSgS~DGt---VrL 64 (574)
|.+|++.|+....| ..|++|.+.+... ...+....... ...+.++.|++++++....... |.+
T Consensus 177 W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 177 WSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp ECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred EeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 77888866655432 3388899877643 24555444443 4556899999887776665554 666
Q ss_pred EeCCC
Q 008196 65 WDTTG 69 (574)
Q Consensus 65 WDl~~ 69 (574)
.|+..
T Consensus 257 ~d~~~ 261 (414)
T PF02897_consen 257 LDLDD 261 (414)
T ss_dssp EECCC
T ss_pred Eeccc
Confidence 67754
No 498
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=62.53 E-value=23 Score=34.48 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008196 551 ENQAELMKEIKSLRKENHQLR 571 (574)
Q Consensus 551 ~~~~~l~~E~~~lr~en~~lr 571 (574)
.++++|.++|+.|.+||+.|.
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555554
No 499
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=62.45 E-value=6.7 Score=34.34 Aligned_cols=6 Identities=67% Similarity=0.855 Sum_probs=2.6
Q ss_pred HHHHHH
Q 008196 566 ENHQLR 571 (574)
Q Consensus 566 en~~lr 571 (574)
||.|||
T Consensus 52 EN~rL~ 57 (86)
T PF12711_consen 52 ENIRLR 57 (86)
T ss_pred HHHHHH
Confidence 444444
No 500
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=62.15 E-value=74 Score=32.42 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008196 500 FTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQETQMSNVMSSILENQAELMKEIKSLRKENHQLRQLL 574 (574)
Q Consensus 500 ~~~~~~~~~~~e~l~~~~~~~~~d~~nlh~e~lrqf~~~~~e~~~~~~~~~~~~~~l~~E~~~lr~en~~lr~~~ 574 (574)
..++-++.-.+.....+.+.+..+... =..-+++-..+..++..-++.+...++++.++|+.+|++.+.||+.|
T Consensus 27 ~~l~~~~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIEEILESDSNG-QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!