Citrus Sinensis ID: 008198

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
MKCHSVAILFFFSFSLLFLCCLSQNSTQTQSPSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSRFSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLRRNKKRSKRSKNWFLKNTNRFREPLETLIKDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCGGLVVSGGN
ccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHcHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHccccccccccEEEEEEEccEEEEEEEEccccccEEEEEcccccEEEEEcccccccccccccEEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEEcccEEEcccEEEEcccEEEEEccccccccEEEEcccccccccEEEEEEccEEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEEccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEcccccccccHHHHHHHccccccccccEEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEcEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHccHHHHHccccccccccccccccEEEcccc
MKCHSVAILFFFSFSLLFLCClsqnstqtqspsiackstpypKLCRSILSafksspsspynygkfsvKQCTKQAQKLSKTIRHYLThekqrsrfshaeagaltdcgeLMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLrrnkkrskrSKNWFLKNTNRFREPLETLIKdirkapchdchkgernlgevesngilvnqsvivsphgtdnfttigdaiafspnnskpedgyfVIYAREAVYEEYVVVpkhkknllligdginrtvitgnhsvidgwttfnsstfavsgerFVAVDvtfkntagpakHQAVALRnnadlssfyrcsfegyqDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNcniyarkpmpnqknavtaqgrtdpnqntgiaiqncsivaapdfakdlnsTATTLnylgrpwkefsRTVYMQSYIgdlispvgwlewngtvgldtlyygefrnygpganttmrvkwpgyslmnasQALNFTVYnftmgdtwlpdtdipfcgglvvsggn
MKCHSVAILFFFSFSLLFLCCLSQNstqtqspsiacKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLthekqrsrfshaEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGlvthaldrnlrrnkkrskrsknwflkntnrfreplETLIKDIRKAPCHDCHKGErnlgevesngILVNQSVIVSPHGTDNFTTIGDAIafspnnskpeDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCGGLVVSGGN
MKCHSVAIlfffsfsllflcclsQNSTQTQSPSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSRFSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLrrnkkrskrsknWFLKNTNRFREPLETLIKDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFviyareavyeeyvvvPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCGGLVVSGGN
***HSVAILFFFSFSLLFLCCLSQ***********C**TPYPKLCRSILSA*********NYGKFSVKQCTK****LSKTIRHYLTH********HAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRN************NWFLKNTNRFREPLETLIKDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPN***PEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYAR*********************TGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCGGLVV****
****SVA*LFFFSFSLLFLC**************ACKSTPYPKLCR*****************KFSVKQCTKQAQKL**********************GALTDCGELMELNVDYLRSIS*************VDRVTSLLSGIVTNQQTCFDELVDS************SNVTRLYSVSLGLVTH***********************************KDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCGGLVVS***
MKCHSVAILFFFSFSLLFLCCLSQ**********ACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSRFSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLRRNKKRSKRSKNWFLKNTNRFREPLETLIKDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCGGLVVSGGN
MKCHSVAILFFFSFSLLFLCCLSQNSTQTQSPSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSRFSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDR************************************APC**CHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCGGLVV****
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKCHSVAILFFFSFSLLFLCCLSQNSTQTQSPSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSRFSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLRRNKKRSKRSKNWFLKNTNRFREPLETLIKDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCGGLVVSGGN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query574 2.2.26 [Sep-21-2011]
Q94CB1619 Probable pectinesterase/p yes no 0.918 0.851 0.685 0.0
Q9FF77624 Probable pectinesterase/p no no 0.923 0.849 0.678 0.0
Q8RXK7573 Probable pectinesterase/p no no 0.956 0.958 0.476 1e-148
Q9SRX4579 Probable pectinesterase/p no no 0.949 0.941 0.460 1e-140
O22256560 Probable pectinesterase/p no no 0.939 0.962 0.452 1e-133
O48711547 Probable pectinesterase/p no no 0.886 0.930 0.413 1e-111
Q9LXK7527 Probable pectinesterase/p no no 0.890 0.969 0.413 1e-111
Q43062522 Pectinesterase/pectineste N/A no 0.790 0.869 0.435 1e-108
P85076321 Pectinesterase OS=Actinid N/A no 0.531 0.950 0.602 1e-105
O04887510 Pectinesterase 2 OS=Citru no no 0.827 0.931 0.432 1e-105
>sp|Q94CB1|PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 Back     alignment and function desciption
 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/543 (68%), Positives = 442/543 (81%), Gaps = 16/543 (2%)

Query: 35  ACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTH-EKQRSR 93
           ACKSTPYPKLCR+IL+A KSSPS PY YGKF++KQC KQA +LSK I  Y    E +   
Sbjct: 82  ACKSTPYPKLCRTILNAVKSSPSDPYRYGKFTIKQCLKQASRLSKVITSYARRVESKPGS 141

Query: 94  FSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFD 153
            +  E GA+ DCGEL EL+V+YL +++ ELK A+ MT   V+ V SLLSG+VTNQQTC D
Sbjct: 142 ATAEEIGAVADCGELSELSVNYLETVTTELKTAQVMTAALVEHVNSLLSGVVTNQQTCLD 201

Query: 154 ELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLRRNKKRSKRSKNWFLKNTNR- 212
            LV++KSG AA +  P+ N+TRLYS+SLGLV+HAL+RNL    KR K SK   L   N  
Sbjct: 202 GLVEAKSGFAAAIGSPMGNLTRLYSISLGLVSHALNRNL----KRFKASKGKILGGGNST 257

Query: 213 FREPLETLIKDIRKAPC---HDCHKGERNLGEV-ESNG--ILVNQSVIVSPHGTDNFTTI 266
           +REPLETLIK +RK  C    DC K  RNLGE+ E++G  ILV+++VIV P  +DNFTTI
Sbjct: 258 YREPLETLIKGLRKT-CDNDKDCRKTSRNLGELGETSGGSILVSKAVIVGPFKSDNFTTI 316

Query: 267 GDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVID 326
            DAIA +PNN++PEDGYFVIYARE VYEEY+VVP +KKNL+L+GDGIN+T+ITGNH+V+D
Sbjct: 317 TDAIAAAPNNTRPEDGYFVIYAREGVYEEYIVVPINKKNLMLMGDGINKTIITGNHNVVD 376

Query: 327 GWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLY 386
           GWTT+N S+FAV GERF+AVDVTF+NTAGP KHQAVALRNNA+ SSFYRCSFEGYQDTLY
Sbjct: 377 GWTTYNCSSFAVVGERFMAVDVTFRNTAGPEKHQAVALRNNAEGSSFYRCSFEGYQDTLY 436

Query: 387 VHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGI 446
           VHSLRQFYRECDIYGTVDFIFGNAAA+FQNCNIYARKPM  QKNA+TA GR DPNQNTGI
Sbjct: 437 VHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIYARKPMAKQKNAITAHGRLDPNQNTGI 496

Query: 447 AIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTV 506
           +I NC+I AAPD A +  S  T   +LGRPWK +SRTV+MQSYI D++ PVGWLEWNGT+
Sbjct: 497 SIINCTIKAAPDLAAEPKSAMT---FLGRPWKPYSRTVFMQSYISDIVQPVGWLEWNGTI 553

Query: 507 GLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCG 566
           GLDT+YYGE+ N+GPGANT  RV+W GY+L+N ++A+NFTVYNFTMGDTWLP TDIPF G
Sbjct: 554 GLDTIYYGEYSNFGPGANTNQRVQWLGYNLLNLAEAMNFTVYNFTMGDTWLPQTDIPFYG 613

Query: 567 GLV 569
           GL+
Sbjct: 614 GLL 616
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9FF77|PME47_ARATH Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1 Back     alignment and function description
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function description
>sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 Back     alignment and function description
>sp|O22256|PME20_ARATH Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2 Back     alignment and function description
>sp|O48711|PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXK7|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
255549442571 Pectinesterase-2 precursor, putative [Ri 0.928 0.933 0.776 0.0
224110056574 predicted protein [Populus trichocarpa] 0.925 0.925 0.747 0.0
224097498543 predicted protein [Populus trichocarpa] 0.935 0.988 0.735 0.0
359487099567 PREDICTED: probable pectinesterase/pecti 0.930 0.941 0.708 0.0
30681457619 pectinesterase 25 [Arabidopsis thaliana] 0.918 0.851 0.685 0.0
6630558617 putative pectinesterase [Arabidopsis tha 0.918 0.854 0.685 0.0
449435184565 PREDICTED: probable pectinesterase/pecti 0.963 0.978 0.668 0.0
297833854625 hypothetical protein ARALYDRAFT_478407 [ 0.918 0.843 0.685 0.0
356517724576 PREDICTED: probable pectinesterase/pecti 0.966 0.963 0.664 0.0
449506385565 PREDICTED: LOW QUALITY PROTEIN: probable 0.963 0.978 0.666 0.0
>gi|255549442|ref|XP_002515774.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223545102|gb|EEF46613.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/538 (77%), Positives = 470/538 (87%), Gaps = 5/538 (0%)

Query: 34  IACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSR 93
           +ACKS+ YPKLCRSILS ++SSPS  Y+Y KFSVKQC KQA +LSK I +YLTH+K RS+
Sbjct: 34  LACKSSLYPKLCRSILSTYRSSPSDLYDYSKFSVKQCIKQANRLSKAINYYLTHDKHRSK 93

Query: 94  FSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQTCFD 153
            +  E GAL DC EL +LNVDYL +IS ELK AESM DE V+RVTSLLSGIVTNQQTC+D
Sbjct: 94  INSKEIGALEDCHELTQLNVDYLGTISSELKSAESMNDELVERVTSLLSGIVTNQQTCYD 153

Query: 154 ELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLRRNKKRSKRSKNWFLKNTNRF 213
            LV+SKS I AVL  PL+NVTRLYSVSLGLVTHALDRNL++NK+  K S    +   NR 
Sbjct: 154 GLVESKSSIVAVLQAPLTNVTRLYSVSLGLVTHALDRNLKKNKRNKKGSHGKGILTKNRI 213

Query: 214 REPLETLIKDIRKAPCHDC--HKGERNLGEVESNGILVNQSVIVSPHGTDNFTTIGDAIA 271
           REPL TLIK +RK+ CH     +  RNL ++E +GIL+N +VIVSP+GTDNFT+IGDAIA
Sbjct: 214 REPLNTLIKALRKSSCHTSGGSRCRRNLADMEEDGILINDTVIVSPYGTDNFTSIGDAIA 273

Query: 272 FSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGWTTF 331
            +PNNSKPEDGYFVIYARE  YEEYV+VPK+KKN+LLIGDGINRTVITGNHSV+DGWTTF
Sbjct: 274 IAPNNSKPEDGYFVIYAREGYYEEYVIVPKYKKNILLIGDGINRTVITGNHSVVDGWTTF 333

Query: 332 NSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLR 391
           NSST AVSGERFVAVDVTF+NTAGP KHQAVALRNNADLS+FYRCSFEGYQDTLYVHSLR
Sbjct: 334 NSSTVAVSGERFVAVDVTFRNTAGPQKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLR 393

Query: 392 QFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNC 451
           QFYRECDIYGTVDFIFGN+AAVFQ+CN+YARKP+PNQKNA TAQGRTDPNQNTGI+I NC
Sbjct: 394 QFYRECDIYGTVDFIFGNSAAVFQSCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNC 453

Query: 452 SIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTL 511
           +I AAPD A DLNS   TLN+LGRPWK++SRTV+MQSYIGDLISPVGWLEWNGTVGLDTL
Sbjct: 454 TIEAAPDLAMDLNS---TLNFLGRPWKQYSRTVFMQSYIGDLISPVGWLEWNGTVGLDTL 510

Query: 512 YYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCGGLV 569
           YYGEF NYGPGANT+MRV+WPGY+LMN SQA NFTVYNFTMGDTWLP+TDIPF GGL+
Sbjct: 511 YYGEFENYGPGANTSMRVQWPGYNLMNVSQAANFTVYNFTMGDTWLPETDIPFSGGLL 568

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224110056|ref|XP_002315399.1| predicted protein [Populus trichocarpa] gi|222864439|gb|EEF01570.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224097498|ref|XP_002310960.1| predicted protein [Populus trichocarpa] gi|222850780|gb|EEE88327.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359487099|ref|XP_002273427.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 25-like [Vitis vinifera] gi|296085424|emb|CBI29156.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30681457|ref|NP_187683.2| pectinesterase 25 [Arabidopsis thaliana] gi|75306364|sp|Q94CB1.1|PME25_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 25; Includes: RecName: Full=Pectinesterase inhibitor 25; AltName: Full=Pectin methylesterase inhibitor 25; Includes: RecName: Full=Pectinesterase 25; Short=PE 25; AltName: Full=Pectin methylesterase 25; Short=AtPME25; Flags: Precursor gi|14334646|gb|AAK59501.1| putative pectinesterase [Arabidopsis thaliana] gi|332641426|gb|AEE74947.1| pectinesterase 25 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6630558|gb|AAF19577.1|AC011708_20 putative pectinesterase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449435184|ref|XP_004135375.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 25-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297833854|ref|XP_002884809.1| hypothetical protein ARALYDRAFT_478407 [Arabidopsis lyrata subsp. lyrata] gi|297330649|gb|EFH61068.1| hypothetical protein ARALYDRAFT_478407 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356517724|ref|XP_003527536.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 47-like [Glycine max] Back     alignment and taxonomy information
>gi|449506385|ref|XP_004162735.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 25-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
TAIR|locus:2103212619 AT3G10720 [Arabidopsis thalian 0.933 0.865 0.649 3.5e-194
TAIR|locus:2175334624 AT5G04970 [Arabidopsis thalian 0.925 0.850 0.651 2e-189
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.939 0.940 0.464 7.6e-128
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 0.928 0.920 0.463 1.9e-124
TAIR|locus:2062013560 AT2G47550 [Arabidopsis thalian 0.574 0.589 0.576 2.8e-122
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.567 0.618 0.556 2.2e-101
TAIR|locus:2066195547 AT2G26440 [Arabidopsis thalian 0.545 0.572 0.536 2e-100
TAIR|locus:2125949525 PME44 "pectin methylesterase 4 0.559 0.611 0.542 1.6e-96
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.552 0.530 0.532 6.9e-94
TAIR|locus:2133219518 AT4G02320 [Arabidopsis thalian 0.559 0.619 0.512 7.9e-93
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1881 (667.2 bits), Expect = 3.5e-194, P = 3.5e-194
 Identities = 357/550 (64%), Positives = 431/550 (78%)

Query:    27 TQTQSPSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLT 86
             +Q+QSPS+ACKSTPYPKLCR+IL+A KSSPS PY YGKF++KQC KQA +LSK I  Y  
Sbjct:    74 SQSQSPSLACKSTPYPKLCRTILNAVKSSPSDPYRYGKFTIKQCLKQASRLSKVITSYAR 133

Query:    87 HEKQRSRFSHAEA-GALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIV 145
               + +   + AE  GA+ DCGEL EL+V+YL +++ ELK A+ MT   V+ V SLLSG+V
Sbjct:   134 RVESKPGSATAEEIGAVADCGELSELSVNYLETVTTELKTAQVMTAALVEHVNSLLSGVV 193

Query:   146 TNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLXXXXXXXXXXXXW 205
             TNQQTC D LV++KSG AA +  P+ N+TRLYS+SLGLV+HAL+RNL             
Sbjct:   194 TNQQTCLDGLVEAKSGFAAAIGSPMGNLTRLYSISLGLVSHALNRNLKRFKASKGKILGG 253

Query:   206 FLKNTNRFREPLETLIKDIRKAPCH---DCHKGERNLGEV-ESNG--ILVNQSVIVSPHG 259
                  + +REPLETLIK +RK  C    DC K  RNLGE+ E++G  ILV+++VIV P  
Sbjct:   254 ---GNSTYREPLETLIKGLRKT-CDNDKDCRKTSRNLGELGETSGGSILVSKAVIVGPFK 309

Query:   260 TDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLLIGDGINRTVIT 319
             +DNFTTI DAIA +PNN++PEDGYF               P +KKNL+L+GDGIN+T+IT
Sbjct:   310 SDNFTTITDAIAAAPNNTRPEDGYFVIYAREGVYEEYIVVPINKKNLMLMGDGINKTIIT 369

Query:   320 GNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFE 379
             GNH+V+DGWTT+N S+FAV GERF+AVDVTF+NTAGP KHQAVALRNNA+ SSFYRCSFE
Sbjct:   370 GNHNVVDGWTTYNCSSFAVVGERFMAVDVTFRNTAGPEKHQAVALRNNAEGSSFYRCSFE 429

Query:   380 GYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTD 439
             GYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAA+FQNCNIYARKPM  QKNA+TA GR D
Sbjct:   430 GYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIYARKPMAKQKNAITAHGRLD 489

Query:   440 PNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGW 499
             PNQNTGI+I NC+I AAPD A +  S  T   +LGRPWK +SRTV+MQSYI D++ PVGW
Sbjct:   490 PNQNTGISIINCTIKAAPDLAAEPKSAMT---FLGRPWKPYSRTVFMQSYISDIVQPVGW 546

Query:   500 LEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPD 559
             LEWNGT+GLDT+YYGE+ N+GPGANT  RV+W GY+L+N ++A+NFTVYNFTMGDTWLP 
Sbjct:   547 LEWNGTIGLDTIYYGEYSNFGPGANTNQRVQWLGYNLLNLAEAMNFTVYNFTMGDTWLPQ 606

Query:   560 TDIPFCGGLV 569
             TDIPF GGL+
Sbjct:   607 TDIPFYGGLL 616
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA;ISS
GO:0016126 "sterol biosynthetic process" evidence=RCA
TAIR|locus:2175334 AT5G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066195 AT2G26440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125949 PME44 "pectin methylesterase 44" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133219 AT4G02320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94CB1PME25_ARATH3, ., 1, ., 1, ., 1, 10.68500.91810.8513yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.3259.1
pectinesterase family protein (EC-3.1.1.11) (555 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_VIII1759
SubName- Full=Putative uncharacterized protein; (327 aa)
  •  •  0.929
estExt_fgenesh4_pm.C_LG_VI0607
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.926
fgenesh4_pg.C_LG_XVI000684
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.926
gw1.X.2863.1
hypothetical protein (378 aa)
  •  •  0.924
eugene3.00081702
SubName- Full=Putative uncharacterized protein; (402 aa)
  •  •  0.924
gw1.II.376.1
hypothetical protein (392 aa)
  •  •  0.920
estExt_fgenesh4_pg.C_LG_I2215
hypothetical protein (403 aa)
  •  •  0.919
gw1.28.798.1
hypothetical protein (346 aa)
  •  •  0.918
gw1.XI.2918.1
hypothetical protein (368 aa)
  •  •  0.918
eugene3.00150667
SubName- Full=Putative uncharacterized protein; (404 aa)
  •  •  0.918

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 0.0
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-159
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-159
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-152
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-151
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-148
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-141
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-141
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-138
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-137
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-137
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-131
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-129
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-119
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-116
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-114
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-113
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-107
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-107
PLN02197588 PLN02197, PLN02197, pectinesterase 7e-79
PLN02432293 PLN02432, PLN02432, putative pectinesterase 4e-61
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 5e-61
PLN02304379 PLN02304, PLN02304, probable pectinesterase 8e-59
PLN02773317 PLN02773, PLN02773, pectinesterase 2e-55
PLN02497331 PLN02497, PLN02497, probable pectinesterase 5e-55
PLN02671359 PLN02671, PLN02671, pectinesterase 2e-48
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 2e-48
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-46
PLN02634359 PLN02634, PLN02634, probable pectinesterase 3e-45
PLN02176340 PLN02176, PLN02176, putative pectinesterase 2e-43
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 8e-34
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 5e-24
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 1e-22
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-15
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 6e-09
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information 
 Score = 1010 bits (2612), Expect = 0.0
 Identities = 417/544 (76%), Positives = 463/544 (85%), Gaps = 11/544 (2%)

Query: 31  SPSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQ 90
           SPS+ACKST YPKLCRSILS  KSSPS PY YGKFSVKQC KQA++LSK I +YLTHE Q
Sbjct: 1   SPSLACKSTLYPKLCRSILSTVKSSPSDPYEYGKFSVKQCLKQARRLSKVINYYLTHENQ 60

Query: 91  RSRFSHAEAGALTDCGELMELNVDYLRSISGELKEAESMTDEFVDRVTSLLSGIVTNQQT 150
             + +H E GAL DCGEL ELNVDYL +IS ELK AE MTD  V+RVTSLLSG+VTNQQT
Sbjct: 61  PGKMTHEEIGALADCGELSELNVDYLETISSELKSAELMTDALVERVTSLLSGVVTNQQT 120

Query: 151 CFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHALDRNLRRNKKRSKRSKNWFLKNT 210
           C+D LVDSKS  AA L  PL N+TRLYSVSLGLV+HAL+RNL++ K R  +      K  
Sbjct: 121 CYDGLVDSKSSFAAALGAPLGNLTRLYSVSLGLVSHALNRNLKKYKGRKGKIHGGGNK-- 178

Query: 211 NRFREPLETLIKDIRKAPCH--DCHKGERNLGEVESNG---ILVNQSVIVSPHGTDNFTT 265
              REPLETLIK +RK+     DC +GERNLGE+       ILV+ +VIV P+GTDNFTT
Sbjct: 179 -TVREPLETLIKVLRKSCDKSKDCRRGERNLGELGETSGGSILVSDAVIVGPYGTDNFTT 237

Query: 266 IGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVI 325
           I DAIA +PNNSKPEDGYFVIYARE  YEEYVVVPK+KKN++LIGDGIN+T+ITGNHSV+
Sbjct: 238 ITDAIAAAPNNSKPEDGYFVIYAREGYYEEYVVVPKNKKNIMLIGDGINKTIITGNHSVV 297

Query: 326 DGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTL 385
           DGWTTFNSSTFAVSGERFVAVDVTF+NTAGP KHQAVALRNNADLS+FYRCSFEGYQDTL
Sbjct: 298 DGWTTFNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTL 357

Query: 386 YVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTG 445
           YVHSLRQFYRECDIYGTVDFIFGNAAA+FQNCN+YARKPM NQKNA TAQGRTDPNQNTG
Sbjct: 358 YVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTG 417

Query: 446 IAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGT 505
           I+I NC+I AAPD A D NS   T+N+LGRPWK +SRTVYMQSYIGDLI PVGWLEWNGT
Sbjct: 418 ISIINCTIEAAPDLAMDPNS---TMNFLGRPWKPYSRTVYMQSYIGDLIQPVGWLEWNGT 474

Query: 506 VGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFC 565
           VGLDT+YYGEF NYGPGANT+MRV+WPGY+LMN +QA+NFTVYNFTMGDTWLP TDIPF 
Sbjct: 475 VGLDTIYYGEFDNYGPGANTSMRVQWPGYNLMNLAQAMNFTVYNFTMGDTWLPQTDIPFY 534

Query: 566 GGLV 569
           GGL+
Sbjct: 535 GGLL 538

Length = 538
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 574
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.95
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.95
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.91
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.33
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.65
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.54
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.39
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.86
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.25
KOG1777 625 consensus Putative Zn-finger protein [General func 96.72
PLN02682369 pectinesterase family protein 96.5
PLN02480343 Probable pectinesterase 96.27
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.27
PRK10531422 acyl-CoA thioesterase; Provisional 96.25
PLN02773317 pectinesterase 96.18
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.05
PLN02793443 Probable polygalacturonase 95.91
PLN02634359 probable pectinesterase 95.91
PLN02218431 polygalacturonase ADPG 95.9
PLN02304379 probable pectinesterase 95.77
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.56
PLN02497331 probable pectinesterase 95.43
PLN02176340 putative pectinesterase 95.42
PLN02197588 pectinesterase 95.42
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.31
PLN02432293 putative pectinesterase 95.24
PLN02671359 pectinesterase 95.21
PLN03003456 Probable polygalacturonase At3g15720 95.2
PLN02665366 pectinesterase family protein 95.14
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.11
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.04
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.98
PLN02916502 pectinesterase family protein 94.88
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.88
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 94.76
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.73
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.64
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.58
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.44
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.26
PLN02314586 pectinesterase 94.16
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.16
PLN03010409 polygalacturonase 94.1
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.93
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.92
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.8
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 93.7
PLN02301548 pectinesterase/pectinesterase inhibitor 93.65
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.37
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.3
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.33
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.16
smart00656190 Amb_all Amb_all domain. 91.99
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 91.94
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 91.65
PLN02155394 polygalacturonase 90.74
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 89.28
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 88.26
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 84.27
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 84.1
PLN02188404 polygalacturonase/glycoside hydrolase family prote 80.93
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=1.3e-140  Score=1165.70  Aligned_cols=505  Identities=37%  Similarity=0.686  Sum_probs=463.5

Q ss_pred             CchhcccCCCCChhchHHhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCChhhhhHHHHHHHHH
Q 008198           30 QSPSIACKSTPYPKLCRSILSAFKSSPSSPYNYGKFSVKQCTKQAQKLSKTIRHYLTHEKQRSRFSHAEAGALTDCGELM  109 (574)
Q Consensus        30 ~~i~~~C~~T~yp~lC~ssLss~p~s~~dp~~L~~iai~~a~~~a~~a~~~i~~ll~~~~~~~~~d~~~k~AL~DC~el~  109 (574)
                      +.|+.+|+.|+||++|+++|++.+....+|++|++++|+++++++.++...++++...     ..+++++.||+||+|+|
T Consensus        54 ~~Ikt~C~sT~YP~lC~sSLs~~~~~~~~p~dLi~aaL~vTl~a~~~a~~~~s~L~~~-----~~~~r~k~AL~DClELl  128 (670)
T PLN02217         54 KAIKDVCAPTDYKETCEDTLRKDAKNTSDPLELVKTAFNATMKQISDVAKKSQTMIEL-----QKDPRTKMALDQCKELM  128 (670)
T ss_pred             HHHHHHhcCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCChHHHHHHHHHHHHH
Confidence            4899999999999999999999873367999999999999999999999988887432     46789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc-CcchhhHhHHHHHHHhhhcchhhhHhhhccCCCccccccccchhhHHHHHHHHHHhhhhhh
Q 008198          110 ELNVDYLRSISGELKEAE-SMTDEFVDRVTSLLSGIVTNQQTCFDELVDSKSGIAAVLYEPLSNVTRLYSVSLGLVTHAL  188 (574)
Q Consensus       110 ~dAid~L~~a~~~l~~~~-~~~~~~~~Dv~TwLSAAlT~q~TC~DgF~~~~~~~~~~l~~~~~~v~~L~SNaLAiv~~ls  188 (574)
                      ++++|+|++++.+|...+ ..+....+|+|||||||||||+||+|||++.+..+++.|...+.++.+|+||+|||++.+.
T Consensus       129 ddAvDeL~~Sl~~L~~~~~~~~~~~~dDvqTWLSAALTnQdTClDGF~~~~~~vk~~m~~~l~nvseLtSNALAmv~~ls  208 (670)
T PLN02217        129 DYAIGELSKSFEELGKFEFHKVDEALIKLRIWLSATISHEQTCLDGFQGTQGNAGETIKKALKTAVQLTHNGLAMVSEMS  208 (670)
T ss_pred             HHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhchhHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999998433 2234567999999999999999999999866556888899999999999999999999876


Q ss_pred             hhhhhc---ccccCcccccccccCCCCCCCCcchhhcccccCCCcccCcCCcccccccCCCccccceEEEcCCCCCCCcc
Q 008198          189 DRNLRR---NKKRSKRSKNWFLKNTNRFREPLETLIKDIRKAPCHDCHKGERNLGEVESNGILVNQSVIVSPHGTDNFTT  265 (574)
Q Consensus       189 ~~~~~~---~~~~~~~l~~~~~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~V~~dg~g~f~T  265 (574)
                      .. +..   ....+|+|   +   .  ++|| +|++.            +|||||+.+...  ++++++|++||+|+|+|
T Consensus       209 s~-~~~~~~~~~~~r~l---~---~--~~~P-~W~~~------------~dRrlL~~~~~~--~~~~~vVa~dGsG~f~T  264 (670)
T PLN02217        209 NY-LGQMQIPEMNSRRL---L---S--QEFP-SWMDQ------------RARRLLNAPMSE--VKPDIVVAQDGSGQYKT  264 (670)
T ss_pred             cc-ccccccCCcccccc---c---c--cCCC-CCCCh------------hhhhhhcCCccc--CCccEEECCCCCCCccC
Confidence            42 111   11135666   2   1  4899 99998            999999886433  78999999999999999


Q ss_pred             HHHHHhhCcCCCCCCCceEEEEEecceEeEEEEEeccCcceEEEecCCCceEEeccccccCCCCcccceeEEEEcCcEEE
Q 008198          266 IGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVA  345 (574)
Q Consensus       266 Iq~Ai~aa~~~~~~~~~~~~I~I~~G~Y~E~V~I~~~~~~itl~G~g~~~tiI~~~~~~~~g~~t~~sat~~v~~~~f~~  345 (574)
                      ||+||+++|++++   +|++||||+|+|+|+|+|+++|+||+|+|+|+++|||+|+++..+|++|+++|||.|.|++|++
T Consensus       265 Iq~Av~a~P~~~~---~r~vI~Ik~GvY~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v~g~~F~a  341 (670)
T PLN02217        265 INEALNFVPKKKN---TTFVVHIKAGIYKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIA  341 (670)
T ss_pred             HHHHHHhccccCC---ceEEEEEeCCceEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEEECCCeEE
Confidence            9999999999887   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeEEEeCCCCCccceeeeeccCCceEEEeceeecccceeeecccceeeeccEEEeccceeecccceEEEeeEEEEccCC
Q 008198          346 VDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPM  425 (574)
Q Consensus       346 ~~it~~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~~~avf~~c~i~~~~~~  425 (574)
                      +||||+|++|+.+|||||||+.+|+++||||+|+|||||||+|.+|||||+|+|+|+||||||+|++|||+|+|++|+|.
T Consensus       342 ~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~I~~r~~~  421 (670)
T PLN02217        342 KNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPL  421 (670)
T ss_pred             EeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEEccEEEEccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcceEEecCCCCCCCCeeEEEEcCEEeeCCCcccccCCcCccceEeeccCcCCCeEEEEecCCCCcccCCCCcCCCCC
Q 008198          426 PNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGDLISPVGWLEWNGT  505 (574)
Q Consensus       426 ~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~i~~~I~p~GW~~w~~~  505 (574)
                      +++.++||||||++++|++||||+||+|++++++.+....   .++||||||++|+|||||+|+|+++|+|+||.+|++.
T Consensus       422 ~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~---~~~yLGRPW~~ysrvVf~~t~l~~~I~P~GW~~W~~~  498 (670)
T PLN02217        422 LNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKET---SKAYLGRPWKEYSRTIIMNTFIPDFVPPEGWQPWLGD  498 (670)
T ss_pred             CCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccc---cceeeccCCCCCceEEEEecccCCeEcCcccCccCCC
Confidence            8889999999999999999999999999999887655444   6899999999999999999999999999999999999


Q ss_pred             CCCCccEEEEecccCCCCCCCCcccCCCCCCCCHHHHhcccccccccCCCCCCCCCCccccCcc
Q 008198          506 VGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNASQALNFTVYNFTMGDTWLPDTDIPFCGGLV  569 (574)
Q Consensus       506 ~~~~~~~f~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~a~~~t~~~f~~g~~W~p~~~~~~~~~~~  569 (574)
                      +.++++||+||+|+||||++++||+|+|+++|+.+||.+||+++||+|++|+|.++|||.+||.
T Consensus       499 ~~~~t~~yaEY~n~GpGa~~s~Rv~W~g~~~lt~~eA~~ft~~~fi~g~~Wlp~~~~p~~~gl~  562 (670)
T PLN02217        499 FGLNTLFYSEVQNTGPGAAITKRVTWPGIKKLSDEEILKFTPAQYIQGDAWIPGKGVPYIPGLF  562 (670)
T ss_pred             CCCCceEEEEeccccCCCCcCCCccccCcccCCHHHHHHhhHHhccCCCCCCCCCCCccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999994

>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 2e-88
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 2e-88
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 8e-18
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 9e-18
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 7e-17
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 3e-14
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  323 bits (828), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 165/321 (51%), Positives = 211/321 (65%), Gaps = 7/321 (2%)
Query: 249 VNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFXXXXXXXXXXXXXXXPKHKKNLLL 308
           V  +V+V+  G+ ++ T+ +A+A +P +SK     +               PK KKN++ 
Sbjct: 5   VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTR---YVIRIKAGVYRENVDVPKKKKNIMF 61
Query: 309 IGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNA 368
           +GDG   T+IT + +V DG TTFNS+T A  G  F+A D+TF+NTAG AKHQAVALR  +
Sbjct: 62  LGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGS 121
Query: 369 DLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQ 428
           DLS+FYRC    YQD+LYVHS RQF+  C I GTVDFIFGNAA V Q+C+I+AR+P   Q
Sbjct: 122 DLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQ 181
Query: 429 KNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQS 488
           KN VTAQGRTDPNQNTGI IQ   I A  D     +S  T   YLGRPWKE+SRTV MQS
Sbjct: 182 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPT---YLGRPWKEYSRTVVMQS 238
Query: 489 YIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLMNAS-QALNFTV 547
            I ++I+P GW  W+G   LDTLYYGE++N G GA T+ RV W G+ ++ +S +A  FT 
Sbjct: 239 SITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTP 298
Query: 548 YNFTMGDTWLPDTDIPFCGGL 568
            +F  G +WL  T  PF  GL
Sbjct: 299 GSFIAGGSWLKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-165
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-165
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-127
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-120
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-102
1x91_A153 Invertase/pectin methylesterase inhibitor family p 4e-22
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 3e-20
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  472 bits (1217), Expect = e-165
 Identities = 166/317 (52%), Positives = 215/317 (67%), Gaps = 7/317 (2%)

Query: 253 VIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDG 312
            +V+  GT ++ T+ +A+A +P+ SK     +VIY +   Y+E V V  +K NL+++GDG
Sbjct: 5   AVVAQDGTGDYQTLAEAVAAAPDKSK---TRYVIYVKRGTYKENVEVASNKMNLMIVGDG 61

Query: 313 INRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSS 372
           +  T ITG+ +V+DG TTF S+T A  G+ F+  D+  +NTAGPAK QAVALR  AD+S 
Sbjct: 62  MYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSV 121

Query: 373 FYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQKNAV 432
             RC  + YQDTLY HS RQFYR+  + GTVDFIFGNAA VFQ C + ARKP   Q+N V
Sbjct: 122 INRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMV 181

Query: 433 TAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSYIGD 492
           TAQGRTDPNQ TG +IQ C+I+A+ D    L    T   YLGRPWKE+SRTV M+SY+G 
Sbjct: 182 TAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPT---YLGRPWKEYSRTVVMESYLGG 238

Query: 493 LISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGY-SLMNASQALNFTVYNFT 551
           LI+P GW EW+G   L TLYYGEF N GPGA T+ RVKWPGY  + + ++A+ FTV    
Sbjct: 239 LINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLI 298

Query: 552 MGDTWLPDTDIPFCGGL 568
            G +WL  T + +  GL
Sbjct: 299 QGGSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.96
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.62
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.39
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.49
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.11
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.82
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.53
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.35
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.1
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.1
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.06
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 96.93
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.88
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.86
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 96.83
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.73
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.7
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.67
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.63
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.59
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.53
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.38
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.27
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.24
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.08
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.99
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.78
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.6
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.41
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.19
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 94.87
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 94.77
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 94.72
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.49
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 92.68
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 90.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 86.77
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 85.39
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 84.85
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 83.01
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 82.38
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 81.51
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 80.9
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=4e-95  Score=752.78  Aligned_cols=314  Identities=53%  Similarity=0.930  Sum_probs=300.5

Q ss_pred             cceEEEcCCCCCCCccHHHHHhhCcCCCCCCCceEEEEEecceEeEEEEEeccCcceEEEecCCCceEEeccccccCCCC
Q 008198          250 NQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGWT  329 (574)
Q Consensus       250 ~~~~~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~~~~I~I~~G~Y~E~V~I~~~~~~itl~G~g~~~tiI~~~~~~~~g~~  329 (574)
                      +++++|++||+|+|+|||+||+++|++++   +|++|+|+||+|+|+|.|++.|++|||+|+|+++|+|+++.+..+|.+
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~---~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~   78 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSK---TRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGST   78 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCS---SCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCC
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCC---ceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCc
Confidence            57899999999999999999999999986   899999999999999999999999999999999999999998888999


Q ss_pred             cccceeEEEEcCcEEEEEeEEEeCCCCCccceeeeeccCCceEEEeceeecccceeeecccceeeeccEEEeccceeecc
Q 008198          330 TFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGN  409 (574)
Q Consensus       330 t~~sat~~v~~~~f~~~~it~~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~  409 (574)
                      |++++||.|.+++|+++||||+|++|+.++|||||++.+|+++|+||+|+|||||||++++||||++|+|+|+||||||+
T Consensus        79 t~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~  158 (317)
T 1xg2_A           79 TFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGN  158 (317)
T ss_dssp             SGGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEEC
T ss_pred             ccceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCC
Confidence            99999999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEeeEEEEccCCCCCcceEEecCCCCCCCCeeEEEEcCEEeeCCCcccccCCcCccceEeeccCcCCCeEEEEecC
Q 008198          410 AAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQSY  489 (574)
Q Consensus       410 ~~avf~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~  489 (574)
                      ++++||+|+|+++++.+++.++||||||+++++++||||+||+|++++++.++..+   .++||||||++|+|+|||+|+
T Consensus       159 ~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~---~~~yLGRpW~~~sr~v~~~t~  235 (317)
T 1xg2_A          159 AAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKE---FPTYLGRPWKEYSRTVVMESY  235 (317)
T ss_dssp             CEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTT---SCEEEECCSSTTCEEEEESCE
T ss_pred             ceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccc---eeEEeecccCCCceEEEEecc
Confidence            99999999999999877889999999999999999999999999999877554433   579999999999999999999


Q ss_pred             CCCcccCCCCcCCCCCCCCCccEEEEecccCCCCCCCCcccCCCCCCC-CHHHHhcccccccccCCCCCCCCCCccccCc
Q 008198          490 IGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYSLM-NASQALNFTVYNFTMGDTWLPDTDIPFCGGL  568 (574)
Q Consensus       490 i~~~I~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~~~Rv~w~~~~~l-~~~~a~~~t~~~f~~g~~W~p~~~~~~~~~~  568 (574)
                      |+++|+|+||.+|++.++++++||+||+|+|||+++++||+|+++|+| +++||.+|++.+||+|++|+|.+++||..||
T Consensus       236 ~~~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          236 LGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             ECTTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             cCCcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            999999999999999989999999999999999999999999998877 5799999999999999889999999999998


Q ss_pred             c
Q 008198          569 V  569 (574)
Q Consensus       569 ~  569 (574)
                      .
T Consensus       316 ~  316 (317)
T 1xg2_A          316 Y  316 (317)
T ss_dssp             C
T ss_pred             c
Confidence            5
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 574
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-140
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 4e-93
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 2e-20
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 2e-17
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  406 bits (1045), Expect = e-140
 Identities = 169/321 (52%), Positives = 218/321 (67%), Gaps = 7/321 (2%)

Query: 249 VNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLL 308
           V  +V+V+  G+ ++ T+ +A+A +P +SK     +VI  +  VY E V VPK KKN++ 
Sbjct: 5   VGPNVVVAADGSGDYKTVSEAVAAAPEDSK---TRYVIRIKAGVYRENVDVPKKKKNIMF 61

Query: 309 IGDGINRTVITGNHSVIDGWTTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNA 368
           +GDG   T+IT + +V DG TTFNS+T A  G  F+A D+TF+NTAG AKHQAVALR  +
Sbjct: 62  LGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGS 121

Query: 369 DLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMPNQ 428
           DLS+FYRC    YQD+LYVHS RQF+  C I GTVDFIFGNAA V Q+C+I+AR+P   Q
Sbjct: 122 DLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQ 181

Query: 429 KNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQS 488
           KN VTAQGRTDPNQNTGI IQ   I A  D        ++   YLGRPWKE+SRTV MQS
Sbjct: 182 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPV---QSSFPTYLGRPWKEYSRTVVMQS 238

Query: 489 YIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYS-LMNASQALNFTV 547
            I ++I+P GW  W+G   LDTLYYGE++N G GA T+ RV W G+  + ++++A  FT 
Sbjct: 239 SITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTP 298

Query: 548 YNFTMGDTWLPDTDIPFCGGL 568
            +F  G +WL  T  PF  GL
Sbjct: 299 GSFIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.94
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.94
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.71
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.71
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.18
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.13
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.93
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.89
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 95.82
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.5
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.31
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.13
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.12
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.06
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.46
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 93.79
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 92.04
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 86.93
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=5.6e-98  Score=768.98  Aligned_cols=314  Identities=54%  Similarity=0.907  Sum_probs=301.7

Q ss_pred             ccceEEEcCCCCCCCccHHHHHhhCcCCCCCCCceEEEEEecceEeEEEEEeccCcceEEEecCCCceEEeccccccCCC
Q 008198          249 VNQSVIVSPHGTDNFTTIGDAIAFSPNNSKPEDGYFVIYAREAVYEEYVVVPKHKKNLLLIGDGINRTVITGNHSVIDGW  328 (574)
Q Consensus       249 ~~~~~~V~~dg~g~f~TIq~Ai~aa~~~~~~~~~~~~I~I~~G~Y~E~V~I~~~~~~itl~G~g~~~tiI~~~~~~~~g~  328 (574)
                      ++++++|++||+|+|+|||+||+++|.+++   .|++|+|+||+|+|+|+|+++|++|+|+|+|++.|+|+++.+..++.
T Consensus         5 ~~p~i~V~~dGsGdf~TIq~AIda~p~~~~---~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~   81 (319)
T d1gq8a_           5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSK---TRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGS   81 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCS---SCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTC
T ss_pred             CCCCEEECCCCCCCccCHHHHHhhCccCCC---CcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCC
Confidence            679999999999999999999999999887   89999999999999999999999999999999999999999998999


Q ss_pred             CcccceeEEEEcCcEEEEEeEEEeCCCCCccceeeeeccCCceEEEeceeecccceeeecccceeeeccEEEeccceeec
Q 008198          329 TTFNSSTFAVSGERFVAVDVTFKNTAGPAKHQAVALRNNADLSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFG  408 (574)
Q Consensus       329 ~t~~sat~~v~~~~f~~~~it~~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG  408 (574)
                      +|+.++||.|.+++|+++||||+|++|+.++|||||++.+||++||+|+|+|||||||++.+||||++|+|+|+||||||
T Consensus        82 ~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG  161 (319)
T d1gq8a_          82 TTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFG  161 (319)
T ss_dssp             CTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEE
T ss_pred             ccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEeeEEEEccCCCCCcceEEecCCCCCCCCeeEEEEcCEEeeCCCcccccCCcCccceEeeccCcCCCeEEEEec
Q 008198          409 NAAAVFQNCNIYARKPMPNQKNAVTAQGRTDPNQNTGIAIQNCSIVAAPDFAKDLNSTATTLNYLGRPWKEFSRTVYMQS  488 (574)
Q Consensus       409 ~~~avf~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s  488 (574)
                      +++++||+|+|+++++..++.++||||+|+++.+++||||++|+|++++++.+....   .++||||||++|+|+||++|
T Consensus       162 ~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~---~~~yLGRpW~~~s~vvf~~t  238 (319)
T d1gq8a_         162 NAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSS---FPTYLGRPWKEYSRTVVMQS  238 (319)
T ss_dssp             SCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGG---SCEEEECCSSTTCEEEEESC
T ss_pred             CceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccc---cceeccCCCCCcceEEEEec
Confidence            999999999999998877888999999999999999999999999999987655444   67999999999999999999


Q ss_pred             CCCCcccCCCCcCCCCCCCCCccEEEEecccCCCCCCCCcccCCCCC-CCCHHHHhcccccccccCCCCCCCCCCccccC
Q 008198          489 YIGDLISPVGWLEWNGTVGLDTLYYGEFRNYGPGANTTMRVKWPGYS-LMNASQALNFTVYNFTMGDTWLPDTDIPFCGG  567 (574)
Q Consensus       489 ~i~~~I~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~~~Rv~w~~~~-~l~~~~a~~~t~~~f~~g~~W~p~~~~~~~~~  567 (574)
                      +|+++|.|+||.+|++.+++++++|+||+|+|||+++++||+|++++ +|+++||.+|++++||+|++|+|.++|||..|
T Consensus       239 ~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~  318 (319)
T d1gq8a_         239 SITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLG  318 (319)
T ss_dssp             EECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCC
T ss_pred             ccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCC
Confidence            99999999999999998899999999999999999999999999875 57999999999999999988999999999999


Q ss_pred             c
Q 008198          568 L  568 (574)
Q Consensus       568 ~  568 (574)
                      |
T Consensus       319 l  319 (319)
T d1gq8a_         319 L  319 (319)
T ss_dssp             C
T ss_pred             C
Confidence            7
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure