Query 008199
Match_columns 574
No_of_seqs 157 out of 177
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 20:45:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03468 XS: XS domain; Inter 100.0 8.9E-46 1.9E-50 333.9 5.7 115 114-231 1-116 (116)
2 PF03469 XH: XH domain; Inter 99.9 1.2E-27 2.6E-32 219.7 5.5 66 504-569 1-66 (132)
3 PF03470 zf-XS: XS zinc finger 99.7 5.5E-18 1.2E-22 127.8 2.9 43 43-86 1-43 (43)
4 TIGR02169 SMC_prok_A chromosom 96.7 2.1 4.6E-05 51.4 32.3 22 136-159 113-134 (1164)
5 PF07888 CALCOCO1: Calcium bin 96.7 1.7 3.8E-05 49.4 29.8 67 237-303 151-217 (546)
6 KOG4643 Uncharacterized coiled 96.6 1.4 3E-05 53.0 27.4 186 244-429 279-519 (1195)
7 PF10174 Cast: RIM-binding pro 96.6 0.92 2E-05 53.7 26.3 216 258-487 400-635 (775)
8 KOG0161 Myosin class II heavy 96.3 5.7 0.00012 51.4 32.1 247 214-466 782-1084(1930)
9 COG1196 Smc Chromosome segrega 96.3 4.5 9.7E-05 50.0 31.9 48 442-489 444-491 (1163)
10 KOG0579 Ste20-like serine/thre 96.0 4 8.7E-05 47.7 26.1 216 233-471 789-1022(1187)
11 KOG0161 Myosin class II heavy 96.0 5.5 0.00012 51.5 29.8 206 256-484 837-1053(1930)
12 PF12128 DUF3584: Protein of u 95.9 4.7 0.0001 50.0 28.6 225 260-490 284-522 (1201)
13 KOG0996 Structural maintenance 95.9 6.4 0.00014 48.3 28.2 35 394-431 471-505 (1293)
14 TIGR02168 SMC_prok_B chromosom 95.9 5.8 0.00012 47.5 28.9 7 181-187 606-612 (1179)
15 TIGR02169 SMC_prok_A chromosom 95.7 6.7 0.00014 47.2 32.6 32 457-488 454-485 (1164)
16 PRK11637 AmiB activator; Provi 95.6 4.2 9E-05 44.6 24.0 48 317-364 169-216 (428)
17 COG1196 Smc Chromosome segrega 95.6 8.9 0.00019 47.4 31.2 27 528-554 551-578 (1163)
18 PF15619 Lebercilin: Ciliary p 95.2 3.8 8.3E-05 40.9 22.4 159 269-476 34-193 (194)
19 PF15066 CAGE1: Cancer-associa 95.2 1.9 4.2E-05 48.0 19.2 77 337-424 444-522 (527)
20 PRK11637 AmiB activator; Provi 95.0 6.8 0.00015 42.9 27.4 48 386-433 168-215 (428)
21 KOG0976 Rho/Rac1-interacting s 94.8 12 0.00026 44.6 28.1 133 318-461 256-399 (1265)
22 KOG0996 Structural maintenance 94.7 15 0.00032 45.4 30.4 168 255-429 375-552 (1293)
23 PF07888 CALCOCO1: Calcium bin 94.3 12 0.00027 42.8 25.3 32 400-431 264-295 (546)
24 KOG0250 DNA repair protein RAD 94.2 18 0.00039 44.3 28.1 107 440-553 867-1017(1074)
25 KOG0612 Rho-associated, coiled 94.0 21 0.00047 44.2 27.9 189 276-470 492-693 (1317)
26 TIGR02168 SMC_prok_B chromosom 94.0 18 0.0004 43.4 32.6 16 143-158 120-135 (1179)
27 PF09726 Macoilin: Transmembra 93.9 12 0.00025 44.3 23.0 43 262-304 458-500 (697)
28 PF08317 Spc7: Spc7 kinetochor 93.6 5.2 0.00011 42.5 18.1 40 394-433 250-290 (325)
29 PF10174 Cast: RIM-binding pro 93.5 21 0.00046 42.6 25.7 68 401-471 237-314 (775)
30 KOG0250 DNA repair protein RAD 92.7 31 0.00068 42.3 29.8 69 252-320 223-305 (1074)
31 PHA02562 46 endonuclease subun 92.6 20 0.00044 40.0 27.4 25 249-273 173-197 (562)
32 COG1382 GimC Prefoldin, chaper 92.4 2.8 6E-05 39.0 12.0 93 398-495 9-114 (119)
33 TIGR00606 rad50 rad50. This fa 91.5 48 0.001 41.8 30.7 38 447-484 987-1024(1311)
34 PRK02224 chromosome segregatio 91.4 37 0.0008 40.4 30.6 11 41-51 25-35 (880)
35 KOG0964 Structural maintenance 91.3 43 0.00093 41.0 24.2 41 445-489 433-473 (1200)
36 KOG0933 Structural maintenance 91.3 44 0.00094 41.0 24.4 105 255-359 242-346 (1174)
37 KOG1853 LIS1-interacting prote 91.2 22 0.00047 37.3 20.6 146 294-464 18-167 (333)
38 PF05483 SCP-1: Synaptonemal c 90.4 43 0.00093 39.5 26.9 151 277-427 484-651 (786)
39 KOG4674 Uncharacterized conser 89.8 77 0.0017 41.3 28.1 210 231-479 1154-1381(1822)
40 PRK09039 hypothetical protein; 89.6 33 0.00072 37.0 20.4 27 478-504 189-216 (343)
41 PF09726 Macoilin: Transmembra 89.3 24 0.00052 41.7 18.8 47 312-358 444-490 (697)
42 KOG0239 Kinesin (KAR3 subfamil 89.1 24 0.00052 41.5 18.6 200 259-504 116-319 (670)
43 KOG1937 Uncharacterized conser 89.1 41 0.00088 37.9 19.0 87 402-495 307-394 (521)
44 KOG4674 Uncharacterized conser 89.0 86 0.0019 40.9 30.5 167 258-428 1244-1424(1822)
45 KOG0971 Microtubule-associated 88.6 67 0.0014 39.2 26.6 100 344-472 387-486 (1243)
46 TIGR00606 rad50 rad50. This fa 88.5 80 0.0017 39.9 29.3 57 400-460 869-925 (1311)
47 KOG1029 Endocytic adaptor prot 88.4 64 0.0014 38.7 28.7 35 395-432 486-520 (1118)
48 PF05605 zf-Di19: Drought indu 88.4 0.28 6.2E-06 38.7 1.7 24 39-66 1-24 (54)
49 PRK02224 chromosome segregatio 88.3 63 0.0014 38.5 29.6 12 400-411 347-358 (880)
50 KOG4572 Predicted DNA-binding 87.9 60 0.0013 39.1 20.2 105 262-366 920-1047(1424)
51 KOG0994 Extracellular matrix g 86.5 99 0.0022 38.8 24.1 38 231-269 1497-1534(1758)
52 KOG0933 Structural maintenance 86.1 96 0.0021 38.3 25.3 34 400-433 887-920 (1174)
53 PF05010 TACC: Transforming ac 85.7 44 0.00094 33.9 20.1 128 243-374 52-182 (207)
54 PF00076 RRM_1: RNA recognitio 85.2 1.9 4E-05 33.6 4.9 55 124-190 1-57 (70)
55 KOG0982 Centrosomal protein Nu 85.1 71 0.0015 35.9 22.6 159 261-422 219-394 (502)
56 PRK04863 mukB cell division pr 84.7 1.3E+02 0.0029 38.7 34.2 28 438-465 436-463 (1486)
57 KOG0612 Rho-associated, coiled 84.7 1.2E+02 0.0026 38.1 26.6 22 23-44 281-303 (1317)
58 KOG0994 Extracellular matrix g 84.2 1.3E+02 0.0027 38.0 27.3 61 230-290 1479-1544(1758)
59 COG1340 Uncharacterized archae 83.8 66 0.0014 34.4 21.4 94 398-495 134-240 (294)
60 KOG0979 Structural maintenance 83.7 1.2E+02 0.0026 37.4 23.0 65 229-298 150-215 (1072)
61 PF13851 GAS: Growth-arrest sp 83.6 26 0.00056 35.1 13.2 87 254-347 83-169 (201)
62 PF05911 DUF869: Plant protein 83.4 1.1E+02 0.0024 36.8 29.2 94 253-356 20-113 (769)
63 KOG0577 Serine/threonine prote 83.0 1.1E+02 0.0023 36.3 24.0 67 240-306 465-537 (948)
64 KOG0962 DNA repair protein RAD 82.8 1.5E+02 0.0032 37.7 24.1 71 354-431 827-897 (1294)
65 PF05701 WEMBL: Weak chloropla 82.5 96 0.0021 35.4 31.6 95 254-349 169-263 (522)
66 KOG0978 E3 ubiquitin ligase in 82.5 1.1E+02 0.0025 36.2 26.8 101 329-436 514-625 (698)
67 PF05701 WEMBL: Weak chloropla 81.5 1E+02 0.0022 35.1 30.2 27 394-420 217-243 (522)
68 TIGR03319 YmdA_YtgF conserved 81.3 67 0.0014 36.7 16.9 12 483-494 183-194 (514)
69 PF14259 RRM_6: RNA recognitio 81.2 3 6.5E-05 33.1 4.6 58 124-193 1-60 (70)
70 PF12128 DUF3584: Protein of u 80.4 1.7E+02 0.0036 36.8 30.3 10 532-541 935-944 (1201)
71 KOG1029 Endocytic adaptor prot 80.0 1.5E+02 0.0032 35.9 23.9 27 513-539 581-612 (1118)
72 KOG0239 Kinesin (KAR3 subfamil 79.4 74 0.0016 37.6 16.8 26 409-434 297-322 (670)
73 KOG0977 Nuclear envelope prote 79.3 1.3E+02 0.0028 34.9 20.6 174 284-471 203-376 (546)
74 KOG0249 LAR-interacting protei 77.4 1.7E+02 0.0036 35.1 19.0 115 219-339 62-181 (916)
75 smart00787 Spc7 Spc7 kinetocho 77.4 1.1E+02 0.0023 32.9 18.1 23 413-435 247-269 (312)
76 PRK00409 recombination and DNA 76.8 57 0.0012 39.1 15.2 26 382-407 571-596 (782)
77 PF05010 TACC: Transforming ac 76.6 92 0.002 31.6 25.5 84 255-338 7-93 (207)
78 PF10186 Atg14: UV radiation r 76.1 94 0.002 31.5 16.5 25 391-415 122-146 (302)
79 KOG0946 ER-Golgi vesicle-tethe 75.9 1.9E+02 0.0042 35.1 24.1 49 230-278 630-678 (970)
80 KOG0971 Microtubule-associated 75.7 2.1E+02 0.0045 35.3 29.8 186 295-504 370-562 (1243)
81 PRK04778 septation ring format 75.5 1.6E+02 0.0034 33.9 27.6 84 410-495 446-533 (569)
82 COG1579 Zn-ribbon protein, pos 75.4 1.1E+02 0.0023 31.9 21.3 72 348-426 84-156 (239)
83 PF00038 Filament: Intermediat 75.4 1.1E+02 0.0023 31.8 22.0 62 394-462 215-280 (312)
84 PF00261 Tropomyosin: Tropomyo 75.3 99 0.0021 31.4 23.8 36 256-291 35-70 (237)
85 PF15272 BBP1_C: Spindle pole 74.9 1E+02 0.0022 31.3 18.9 133 251-412 13-149 (196)
86 PF04065 Not3: Not1 N-terminal 74.8 1.1E+02 0.0024 31.7 17.4 179 262-470 6-189 (233)
87 smart00362 RRM_2 RNA recogniti 74.3 6.8 0.00015 29.5 4.6 47 124-181 2-49 (72)
88 PF15070 GOLGA2L5: Putative go 73.8 1.9E+02 0.0041 34.0 23.6 34 249-282 28-61 (617)
89 PHA02540 61 DNA primase; Provi 73.8 0.86 1.9E-05 49.0 -0.7 124 40-190 27-161 (337)
90 KOG0804 Cytoplasmic Zn-finger 73.7 36 0.00078 38.3 11.5 22 221-242 278-299 (493)
91 KOG1853 LIS1-interacting prote 70.6 1.5E+02 0.0032 31.4 20.0 39 388-426 133-171 (333)
92 KOG0163 Myosin class VI heavy 69.7 1.6E+02 0.0034 35.6 15.8 10 214-223 822-831 (1259)
93 PRK12704 phosphodiesterase; Pr 69.3 2.2E+02 0.0047 32.7 20.5 12 542-553 274-285 (520)
94 KOG0018 Structural maintenance 69.0 3E+02 0.0066 34.4 25.1 116 215-340 629-754 (1141)
95 TIGR01069 mutS2 MutS2 family p 68.6 1.1E+02 0.0024 36.6 15.0 42 317-358 514-555 (771)
96 PRK04778 septation ring format 68.3 2.3E+02 0.0049 32.6 28.5 104 386-489 315-428 (569)
97 KOG0804 Cytoplasmic Zn-finger 67.6 2.2E+02 0.0048 32.3 15.9 20 328-347 347-366 (493)
98 PF13894 zf-C2H2_4: C2H2-type 67.5 3.8 8.2E-05 25.7 1.6 20 41-63 1-20 (24)
99 PRK00106 hypothetical protein; 65.9 2.6E+02 0.0056 32.4 23.4 53 374-426 162-218 (535)
100 PRK00409 recombination and DNA 65.5 1.6E+02 0.0035 35.4 15.5 71 249-323 512-582 (782)
101 TIGR03319 YmdA_YtgF conserved 65.3 2.5E+02 0.0055 32.1 23.5 54 374-427 141-198 (514)
102 PRK12704 phosphodiesterase; Pr 64.9 2.6E+02 0.0057 32.1 23.2 53 374-426 147-203 (520)
103 PRK09039 hypothetical protein; 64.2 2.2E+02 0.0047 30.9 18.4 49 254-302 57-105 (343)
104 KOG2412 Nuclear-export-signal 64.0 2.8E+02 0.0061 32.2 16.1 46 315-362 198-245 (591)
105 PF04880 NUDE_C: NUDE protein, 63.5 12 0.00025 36.8 4.8 28 399-426 11-38 (166)
106 PF10498 IFT57: Intra-flagella 62.9 2.4E+02 0.0052 30.9 15.9 35 56-94 23-57 (359)
107 PF08702 Fib_alpha: Fibrinogen 62.6 1.5E+02 0.0032 28.4 12.4 59 251-309 30-91 (146)
108 PF07106 TBPIP: Tat binding pr 62.5 44 0.00095 32.0 8.5 79 399-488 76-154 (169)
109 PF06637 PV-1: PV-1 protein (P 62.3 2.4E+02 0.0053 31.4 14.7 108 253-360 281-388 (442)
110 KOG0963 Transcription factor/C 60.6 3.4E+02 0.0074 32.0 26.0 33 394-429 309-341 (629)
111 KOG4807 F-actin binding protei 60.6 2.9E+02 0.0062 31.1 20.4 79 394-486 462-540 (593)
112 PHA02562 46 endonuclease subun 60.0 2.9E+02 0.0063 31.0 29.3 36 253-288 184-219 (562)
113 COG0419 SbcC ATPase involved i 60.0 3.9E+02 0.0085 32.5 29.7 23 406-428 682-704 (908)
114 PF05622 HOOK: HOOK protein; 60.0 2.9 6.4E-05 48.8 0.0 65 401-468 536-600 (713)
115 cd07651 F-BAR_PombeCdc15_like 59.8 2E+02 0.0043 29.0 18.8 104 313-429 106-214 (236)
116 PF15254 CCDC14: Coiled-coil d 59.0 4E+02 0.0088 32.3 16.8 95 380-493 454-549 (861)
117 PF05557 MAD: Mitotic checkpoi 58.8 3.2 6.9E-05 48.6 0.0 93 395-487 288-393 (722)
118 PF10168 Nup88: Nuclear pore c 57.5 4.1E+02 0.0088 31.9 17.8 69 271-339 551-625 (717)
119 smart00030 CLb CLUSTERIN Beta 56.6 54 0.0012 33.2 8.1 37 382-418 44-80 (206)
120 PTZ00121 MAEBL; Provisional 56.0 6E+02 0.013 33.4 26.5 44 290-333 1571-1614(2084)
121 KOG2129 Uncharacterized conser 55.7 3E+02 0.0065 31.2 14.1 93 243-335 166-274 (552)
122 PTZ00332 paraflagellar rod pro 55.7 3.8E+02 0.0082 31.0 20.8 131 289-455 264-416 (589)
123 KOG0946 ER-Golgi vesicle-tethe 55.5 4.7E+02 0.01 32.0 19.7 173 290-484 651-839 (970)
124 KOG0995 Centromere-associated 55.4 4E+02 0.0087 31.2 27.7 50 231-283 205-254 (581)
125 PF11559 ADIP: Afadin- and alp 54.9 1.9E+02 0.004 27.2 14.1 99 300-429 52-150 (151)
126 PF00096 zf-C2H2: Zinc finger, 54.3 7.3 0.00016 24.9 1.2 20 41-63 1-20 (23)
127 KOG0163 Myosin class VI heavy 53.8 5E+02 0.011 31.8 19.8 39 309-347 891-929 (1259)
128 PF09731 Mitofilin: Mitochondr 53.8 3.9E+02 0.0084 30.5 21.4 24 395-418 378-401 (582)
129 PF13863 DUF4200: Domain of un 53.6 1.7E+02 0.0037 26.3 14.1 26 408-433 70-95 (126)
130 PF05262 Borrelia_P83: Borreli 53.5 4E+02 0.0087 30.6 16.5 21 190-210 108-128 (489)
131 KOG0964 Structural maintenance 53.4 5.5E+02 0.012 32.1 25.0 117 217-349 631-755 (1200)
132 TIGR01069 mutS2 MutS2 family p 53.3 2.8E+02 0.006 33.4 14.7 30 306-338 560-589 (771)
133 COG2433 Uncharacterized conser 53.2 97 0.0021 36.2 10.4 37 395-434 474-510 (652)
134 KOG4673 Transcription factor T 53.1 4.8E+02 0.01 31.4 26.9 33 246-278 342-374 (961)
135 PRK04863 mukB cell division pr 51.9 6.7E+02 0.015 32.7 27.4 23 442-464 447-469 (1486)
136 KOG1265 Phospholipase C [Lipid 51.7 5.6E+02 0.012 31.8 19.1 23 25-47 792-819 (1189)
137 PLN03120 nucleic acid binding 51.6 32 0.00069 36.1 5.9 58 123-193 6-64 (260)
138 TIGR01649 hnRNP-L_PTB hnRNP-L/ 50.9 27 0.00057 39.0 5.6 72 118-199 389-463 (481)
139 PF05769 DUF837: Protein of un 50.6 2.7E+02 0.0057 27.7 19.3 40 300-339 45-95 (181)
140 PLN03229 acetyl-coenzyme A car 50.4 5.4E+02 0.012 31.2 21.3 58 401-458 648-709 (762)
141 PF00261 Tropomyosin: Tropomyo 50.3 2.9E+02 0.0063 28.0 21.1 45 442-486 174-218 (237)
142 KOG4643 Uncharacterized coiled 49.9 6.2E+02 0.013 31.8 29.3 12 213-224 285-296 (1195)
143 PF10168 Nup88: Nuclear pore c 49.7 5.3E+02 0.012 30.9 18.0 27 333-359 637-663 (717)
144 PF10234 Cluap1: Clusterin-ass 48.8 3.5E+02 0.0077 28.6 13.8 159 193-364 72-236 (267)
145 COG1340 Uncharacterized archae 48.5 3.8E+02 0.0082 28.9 27.0 101 389-493 166-275 (294)
146 PF12325 TMF_TATA_bd: TATA ele 48.5 1.5E+02 0.0032 27.7 9.2 46 415-471 71-116 (120)
147 PF15236 CCDC66: Coiled-coil d 48.1 2.8E+02 0.006 27.2 16.3 97 218-314 15-116 (157)
148 PLN03121 nucleic acid binding 47.9 30 0.00065 36.0 4.9 61 121-193 5-65 (243)
149 PF04012 PspA_IM30: PspA/IM30 47.9 2.9E+02 0.0063 27.4 24.5 161 294-467 24-188 (221)
150 KOG4212 RNA-binding protein hn 47.7 34 0.00073 38.5 5.5 66 124-199 47-113 (608)
151 PRK00106 hypothetical protein; 47.6 5.1E+02 0.011 30.1 19.1 8 337-344 113-120 (535)
152 PF05667 DUF812: Protein of un 47.3 5.3E+02 0.012 30.2 22.9 40 254-293 332-371 (594)
153 PF00769 ERM: Ezrin/radixin/mo 47.1 3.4E+02 0.0075 28.0 15.6 67 298-364 14-86 (246)
154 KOG2817 Predicted E3 ubiquitin 46.9 8.4 0.00018 42.3 0.9 10 40-49 374-383 (394)
155 COG2433 Uncharacterized conser 46.4 2.7E+02 0.0058 32.8 12.4 60 386-463 441-500 (652)
156 PF11068 YlqD: YlqD protein; 46.3 97 0.0021 29.3 7.7 85 324-431 19-103 (131)
157 KOG0976 Rho/Rac1-interacting s 46.1 6.6E+02 0.014 30.9 23.8 29 332-360 173-201 (1265)
158 PF13912 zf-C2H2_6: C2H2-type 46.0 11 0.00025 25.0 1.1 21 40-63 1-21 (27)
159 PF10481 CENP-F_N: Cenp-F N-te 45.9 3.1E+02 0.0067 29.4 11.9 23 442-464 107-129 (307)
160 KOG0977 Nuclear envelope prote 45.7 5.5E+02 0.012 29.9 27.3 67 394-460 175-254 (546)
161 PRK12705 hypothetical protein; 44.8 5.4E+02 0.012 29.6 21.1 73 330-404 93-166 (508)
162 TIGR01661 ELAV_HUD_SF ELAV/HuD 44.2 36 0.00079 35.4 5.1 52 123-185 271-325 (352)
163 PF04111 APG6: Autophagy prote 43.4 3.6E+02 0.0079 28.8 12.4 30 529-559 176-205 (314)
164 PRK10884 SH3 domain-containing 43.3 3E+02 0.0065 27.9 11.2 24 316-339 134-157 (206)
165 PRK00398 rpoP DNA-directed RNA 42.6 16 0.00035 27.9 1.6 11 39-49 20-30 (46)
166 PRK06569 F0F1 ATP synthase sub 42.6 3.3E+02 0.0072 26.5 15.2 20 383-402 112-131 (155)
167 PF03962 Mnd1: Mnd1 family; I 42.5 2.4E+02 0.0053 27.9 10.3 60 413-472 77-138 (188)
168 COG4942 Membrane-bound metallo 42.4 5.5E+02 0.012 29.0 22.3 16 439-454 233-248 (420)
169 PF04508 Pox_A_type_inc: Viral 42.2 25 0.00055 24.0 2.3 19 395-413 1-19 (23)
170 PF07989 Microtub_assoc: Micro 41.9 56 0.0012 28.0 5.0 43 308-350 30-72 (75)
171 COG0419 SbcC ATPase involved i 41.8 7.3E+02 0.016 30.2 30.9 36 391-426 420-455 (908)
172 PF13465 zf-H2C2_2: Zinc-finge 41.7 14 0.0003 25.1 1.0 13 36-48 10-22 (26)
173 smart00360 RRM RNA recognition 40.8 36 0.00078 25.2 3.3 46 141-189 7-55 (71)
174 PF04810 zf-Sec23_Sec24: Sec23 40.4 18 0.00039 27.1 1.5 16 33-48 17-32 (40)
175 PF08702 Fib_alpha: Fibrinogen 40.2 3.4E+02 0.0074 26.0 15.4 67 253-319 53-120 (146)
176 PF04849 HAP1_N: HAP1 N-termin 40.2 5.1E+02 0.011 28.0 23.6 59 392-461 231-289 (306)
177 PF10481 CENP-F_N: Cenp-F N-te 40.2 5E+02 0.011 27.9 15.7 105 326-441 23-138 (307)
178 PF15619 Lebercilin: Ciliary p 40.2 4E+02 0.0086 26.7 17.6 83 256-345 60-142 (194)
179 PRK13182 racA polar chromosome 40.0 1.6E+02 0.0034 29.2 8.4 34 380-413 110-143 (175)
180 PRK00732 fliE flagellar hook-b 39.9 1.4E+02 0.003 27.2 7.3 69 230-309 33-101 (102)
181 PRK10803 tol-pal system protei 39.9 71 0.0015 33.2 6.3 44 404-461 56-99 (263)
182 PRK10698 phage shock protein P 39.8 4.2E+02 0.0091 26.9 23.8 59 256-314 16-77 (222)
183 PHA00616 hypothetical protein 39.6 10 0.00022 29.5 0.1 22 40-64 1-22 (44)
184 PRK09343 prefoldin subunit bet 39.3 3.1E+02 0.0068 25.2 12.6 80 411-495 27-115 (121)
185 COG5109 Uncharacterized conser 38.7 13 0.00028 40.0 0.7 13 38-50 374-386 (396)
186 PLN03134 glycine-rich RNA-bind 37.5 55 0.0012 30.8 4.7 56 123-190 36-94 (144)
187 smart00400 ZnF_CHCC zinc finge 36.5 49 0.0011 26.0 3.6 36 27-66 10-45 (55)
188 COG1842 PspA Phage shock prote 36.4 4.9E+02 0.011 26.7 23.9 47 291-337 22-68 (225)
189 PF08317 Spc7: Spc7 kinetochor 36.2 5.6E+02 0.012 27.3 21.8 7 147-153 16-22 (325)
190 PF04059 RRM_2: RNA recognitio 35.9 1.1E+02 0.0025 27.4 6.2 59 123-196 3-66 (97)
191 PF15070 GOLGA2L5: Putative go 35.6 8.1E+02 0.017 29.0 26.0 31 284-314 3-33 (617)
192 PF06637 PV-1: PV-1 protein (P 35.6 6.8E+02 0.015 28.1 14.4 29 399-430 353-381 (442)
193 PRK12728 fliE flagellar hook-b 35.3 1.3E+02 0.0029 27.2 6.6 38 271-309 64-101 (102)
194 cd00350 rubredoxin_like Rubred 35.1 17 0.00037 26.1 0.7 16 37-52 14-29 (33)
195 KOG0247 Kinesin-like protein [ 34.5 9.2E+02 0.02 29.3 15.2 33 239-271 479-511 (809)
196 TIGR03655 anti_R_Lar restricti 34.3 18 0.00039 28.5 0.7 10 42-51 3-12 (53)
197 PF11932 DUF3450: Protein of u 34.3 5.2E+02 0.011 26.3 13.4 27 445-471 78-104 (251)
198 smart00531 TFIIE Transcription 34.0 21 0.00047 33.7 1.4 13 37-49 120-132 (147)
199 TIGR01005 eps_transp_fam exopo 34.0 8.5E+02 0.018 28.8 15.5 58 257-314 288-345 (754)
200 PRK03907 fliE flagellar hook-b 33.8 1.5E+02 0.0033 26.7 6.6 37 272-309 60-96 (97)
201 KOG1937 Uncharacterized conser 33.6 7.9E+02 0.017 28.2 20.9 51 313-363 358-413 (521)
202 KOG4360 Uncharacterized coiled 33.4 8.3E+02 0.018 28.5 14.7 50 404-461 235-288 (596)
203 TIGR00205 fliE flagellar hook- 33.2 2E+02 0.0043 26.4 7.4 39 270-309 70-108 (108)
204 KOG0533 RRM motif-containing p 33.2 63 0.0014 33.6 4.6 66 122-199 84-151 (243)
205 PF00301 Rubredoxin: Rubredoxi 33.0 19 0.00042 28.3 0.7 14 38-51 32-45 (47)
206 PF03670 UPF0184: Uncharacteri 33.0 1.6E+02 0.0036 26.0 6.4 48 259-306 28-75 (83)
207 PF10058 DUF2296: Predicted in 33.0 23 0.00049 28.6 1.1 19 29-47 32-51 (54)
208 PF05667 DUF812: Protein of un 32.9 8.7E+02 0.019 28.5 26.2 213 254-487 325-555 (594)
209 KOG4593 Mitotic checkpoint pro 32.8 9.5E+02 0.021 28.9 22.0 160 248-429 156-316 (716)
210 PF01576 Myosin_tail_1: Myosin 32.7 15 0.00032 44.3 0.0 196 286-488 106-308 (859)
211 PF14354 Lar_restr_allev: Rest 32.7 20 0.00043 28.5 0.7 11 40-51 3-13 (61)
212 TIGR00219 mreC rod shape-deter 32.5 1.1E+02 0.0025 32.1 6.5 42 393-434 71-113 (283)
213 PF11577 NEMO: NF-kappa-B esse 32.5 3.1E+02 0.0068 23.3 8.7 51 313-363 5-55 (68)
214 TIGR03185 DNA_S_dndD DNA sulfu 32.1 8.7E+02 0.019 28.3 26.0 19 411-429 397-415 (650)
215 PF14817 HAUS5: HAUS augmin-li 32.1 5.7E+02 0.012 30.3 12.5 80 245-324 74-159 (632)
216 PF02994 Transposase_22: L1 tr 32.0 1E+02 0.0022 33.7 6.3 30 440-469 140-169 (370)
217 COG1579 Zn-ribbon protein, pos 31.9 6.1E+02 0.013 26.5 19.2 12 533-544 175-186 (239)
218 COG5533 UBP5 Ubiquitin C-termi 31.7 30 0.00065 37.5 2.1 28 16-49 266-293 (415)
219 PF07111 HCR: Alpha helical co 31.5 1E+03 0.022 28.8 22.1 99 342-463 118-216 (739)
220 PF12072 DUF3552: Domain of un 31.4 5.3E+02 0.012 25.6 18.3 19 375-393 144-162 (201)
221 PF10458 Val_tRNA-synt_C: Valy 31.3 2.3E+02 0.0049 23.3 6.8 25 402-429 4-28 (66)
222 PRK01156 chromosome segregatio 31.3 1E+03 0.022 28.8 32.1 16 136-151 102-117 (895)
223 KOG1103 Predicted coiled-coil 31.1 7.8E+02 0.017 27.4 21.7 57 306-362 99-155 (561)
224 KOG0980 Actin-binding protein 30.9 1.1E+03 0.024 29.2 29.7 60 479-546 588-649 (980)
225 PF05129 Elf1: Transcription e 30.5 21 0.00045 31.0 0.6 14 36-49 18-31 (81)
226 KOG1655 Protein involved in va 29.9 6.3E+02 0.014 25.9 15.4 7 478-484 142-148 (218)
227 KOG1150 Predicted molecular ch 29.9 3E+02 0.0064 28.4 8.5 46 315-367 162-210 (250)
228 KOG2072 Translation initiation 29.9 1.1E+03 0.025 29.0 21.7 27 386-412 668-694 (988)
229 PF05622 HOOK: HOOK protein; 29.9 17 0.00038 42.6 0.0 103 322-429 292-401 (713)
230 COG4985 ABC-type phosphate tra 29.8 5.9E+02 0.013 26.9 10.7 103 114-226 43-154 (289)
231 PF02049 FliE: Flagellar hook- 29.7 1.8E+02 0.0039 25.6 6.3 38 271-309 58-95 (96)
232 PRK00790 fliE flagellar hook-b 29.0 1.7E+02 0.0036 27.0 6.1 37 272-309 72-108 (109)
233 PF13094 CENP-Q: CENP-Q, a CEN 29.0 4.1E+02 0.0088 25.2 9.1 45 315-359 21-65 (160)
234 PRK01699 fliE flagellar hook-b 28.9 84 0.0018 28.4 4.2 37 272-309 62-98 (99)
235 PF06428 Sec2p: GDP/GTP exchan 28.5 2.5E+02 0.0055 25.4 7.1 84 320-440 3-90 (100)
236 COG0724 RNA-binding proteins ( 28.5 1E+02 0.0022 29.0 4.9 61 121-192 115-178 (306)
237 PF07111 HCR: Alpha helical co 28.4 1.1E+03 0.024 28.4 24.8 143 281-433 118-277 (739)
238 PF12072 DUF3552: Domain of un 28.3 6E+02 0.013 25.2 18.1 34 325-358 82-115 (201)
239 KOG1151 Tousled-like protein k 28.0 1E+03 0.022 27.8 12.9 98 319-425 331-445 (775)
240 cd00590 RRM RRM (RNA recogniti 27.9 1.3E+02 0.0028 22.4 4.6 54 124-189 2-57 (74)
241 PF14197 Cep57_CLD_2: Centroso 27.8 3.7E+02 0.0081 22.7 8.9 29 312-340 38-66 (69)
242 KOG4364 Chromatin assembly fac 27.8 9E+02 0.019 29.1 12.8 14 285-298 250-263 (811)
243 PF09787 Golgin_A5: Golgin sub 27.7 9.5E+02 0.021 27.3 26.4 64 417-482 367-430 (511)
244 PTZ00491 major vault protein; 27.6 9.6E+02 0.021 29.5 13.5 23 411-433 757-779 (850)
245 PF13909 zf-H2C2_5: C2H2-type 27.6 30 0.00065 22.5 0.8 19 41-63 1-19 (24)
246 PTZ00464 SNF-7-like protein; P 27.6 6.7E+02 0.014 25.5 14.8 21 330-350 16-36 (211)
247 KOG0127 Nucleolar protein fibr 27.3 77 0.0017 36.7 4.4 51 121-180 117-167 (678)
248 PRK00253 fliE flagellar hook-b 27.2 4E+02 0.0087 24.3 8.3 37 272-309 71-107 (108)
249 COG5185 HEC1 Protein involved 26.9 1E+03 0.023 27.5 26.5 99 245-348 252-357 (622)
250 cd07647 F-BAR_PSTPIP The F-BAR 26.7 6.8E+02 0.015 25.3 17.9 123 303-431 95-219 (239)
251 PLN03188 kinesin-12 family pro 26.7 1.4E+03 0.03 29.6 14.9 111 271-382 1114-1253(1320)
252 PLN02678 seryl-tRNA synthetase 26.6 3.9E+02 0.0085 30.2 9.8 54 437-508 71-133 (448)
253 PF07464 ApoLp-III: Apolipopho 26.6 1.1E+02 0.0024 29.7 4.8 60 276-335 61-120 (155)
254 PF10473 CENP-F_leu_zip: Leuci 26.2 5.9E+02 0.013 24.4 18.1 62 313-374 37-101 (140)
255 TIGR02894 DNA_bind_RsfA transc 26.2 6.5E+02 0.014 24.9 11.7 29 443-471 117-145 (161)
256 PF12344 UvrB: Ultra-violet re 26.1 92 0.002 24.4 3.3 24 281-304 4-30 (44)
257 PF10805 DUF2730: Protein of u 25.7 2.6E+02 0.0056 25.2 6.7 44 430-473 57-101 (106)
258 PF13913 zf-C2HC_2: zinc-finge 25.7 44 0.00095 22.7 1.4 20 40-63 2-21 (25)
259 PF07899 Frigida: Frigida-like 25.3 1.7E+02 0.0036 31.1 6.3 44 370-413 234-281 (290)
260 PF10146 zf-C4H2: Zinc finger- 25.3 7.7E+02 0.017 25.5 14.2 21 296-316 32-52 (230)
261 cd07623 BAR_SNX1_2 The Bin/Amp 25.2 4.1E+02 0.009 26.7 8.9 61 213-277 83-143 (224)
262 PRK10884 SH3 domain-containing 25.2 7.3E+02 0.016 25.1 13.1 17 204-221 66-82 (206)
263 KOG0962 DNA repair protein RAD 25.1 1.6E+03 0.035 29.1 25.0 62 267-328 888-952 (1294)
264 TIGR01661 ELAV_HUD_SF ELAV/HuD 25.1 1.1E+02 0.0024 31.9 4.9 48 123-181 5-55 (352)
265 PF05483 SCP-1: Synaptonemal c 24.7 1.3E+03 0.028 27.9 30.7 36 256-291 239-274 (786)
266 PF00038 Filament: Intermediat 24.7 7.9E+02 0.017 25.4 27.0 166 294-490 45-220 (312)
267 COG4026 Uncharacterized protei 24.7 3.3E+02 0.0072 28.5 7.9 59 391-453 145-207 (290)
268 PF06705 SF-assemblin: SF-asse 24.4 7.6E+02 0.017 25.1 24.5 26 418-443 174-199 (247)
269 KOG4005 Transcription factor X 24.2 8.7E+02 0.019 25.7 10.9 86 340-474 72-157 (292)
270 KOG2264 Exostosin EXT1L [Signa 24.0 5.1E+02 0.011 30.6 9.9 44 385-431 76-119 (907)
271 PF05266 DUF724: Protein of un 23.9 6.6E+02 0.014 25.1 9.8 16 417-432 136-151 (190)
272 COG0576 GrpE Molecular chapero 23.5 6E+02 0.013 25.4 9.5 55 460-520 93-156 (193)
273 cd00730 rubredoxin Rubredoxin; 23.5 26 0.00057 27.8 -0.0 13 39-51 33-45 (50)
274 PF04111 APG6: Autophagy prote 23.4 9.3E+02 0.02 25.8 12.5 14 545-558 263-278 (314)
275 PF04012 PspA_IM30: PspA/IM30 23.2 7.4E+02 0.016 24.5 19.0 91 255-345 14-104 (221)
276 TIGR00165 S18 ribosomal protei 23.1 94 0.002 26.5 3.2 50 42-92 7-59 (70)
277 COG5019 CDC3 Septin family pro 22.9 4.5E+02 0.0098 29.2 9.0 55 292-346 313-367 (373)
278 PF14988 DUF4515: Domain of un 22.9 8E+02 0.017 24.8 24.6 55 258-312 23-77 (206)
279 PF01093 Clusterin: Clusterin; 22.5 3.2E+02 0.007 30.9 8.0 36 382-417 38-73 (436)
280 PF11608 Limkain-b1: Limkain b 22.4 86 0.0019 28.0 2.9 46 123-181 4-49 (90)
281 PRK00846 hypothetical protein; 22.4 3.8E+02 0.0082 23.3 6.8 52 440-495 9-60 (77)
282 KOG1854 Mitochondrial inner me 22.3 1.4E+03 0.03 27.3 20.2 202 242-454 150-391 (657)
283 PRK03824 hypA hydrogenase nick 22.2 99 0.0022 29.1 3.5 30 18-47 42-77 (135)
284 PF04880 NUDE_C: NUDE protein, 22.2 97 0.0021 30.5 3.5 11 273-283 2-12 (166)
285 PF06054 CoiA: Competence prot 22.2 1.5E+02 0.0034 32.3 5.5 104 38-165 28-143 (375)
286 PRK01156 chromosome segregatio 22.0 1.4E+03 0.031 27.4 31.7 35 255-289 467-501 (895)
287 PF03804 DUF325: Viral domain 22.0 60 0.0013 27.5 1.7 25 496-520 31-55 (71)
288 PF12718 Tropomyosin_1: Tropom 21.9 6.9E+02 0.015 23.7 15.8 25 391-415 69-93 (143)
289 smart00787 Spc7 Spc7 kinetocho 21.8 1E+03 0.022 25.6 22.0 39 443-488 224-262 (312)
290 PF07246 Phlebovirus_NSM: Phle 21.8 4.8E+02 0.01 27.7 8.6 16 475-490 219-234 (264)
291 PF15023 DUF4523: Protein of u 21.7 1.2E+02 0.0025 29.7 3.9 62 121-191 84-145 (166)
292 TIGR01622 SF-CC1 splicing fact 21.6 1.4E+02 0.003 32.5 5.1 48 123-180 91-140 (457)
293 KOG4722 Zn-finger protein [Gen 21.6 1.2E+03 0.027 26.5 16.4 63 295-357 299-363 (672)
294 PRK13922 rod shape-determining 21.5 2.4E+02 0.0051 29.0 6.4 44 392-435 73-116 (276)
295 KOG0130 RNA-binding protein RB 21.5 1E+02 0.0022 29.9 3.4 51 119-180 70-123 (170)
296 PRK00464 nrdR transcriptional 21.4 39 0.00085 32.7 0.7 9 41-49 1-9 (154)
297 PF07926 TPR_MLP1_2: TPR/MLP1/ 21.4 6.5E+02 0.014 23.2 16.0 40 325-364 70-109 (132)
298 KOG0963 Transcription factor/C 21.4 1.4E+03 0.031 27.1 24.5 47 440-495 313-359 (629)
299 TIGR01628 PABP-1234 polyadenyl 21.2 1.3E+02 0.0027 34.1 4.7 50 123-183 90-141 (562)
300 TIGR03545 conserved hypothetic 21.0 8.6E+02 0.019 28.3 11.3 28 413-440 238-265 (555)
301 PF10186 Atg14: UV radiation r 20.8 8.7E+02 0.019 24.5 18.7 22 392-413 116-137 (302)
302 PF10805 DUF2730: Protein of u 20.8 2.1E+02 0.0045 25.8 5.2 33 400-432 47-85 (106)
303 PF03114 BAR: BAR domain; Int 20.7 7.2E+02 0.016 23.5 17.7 63 286-348 96-158 (229)
304 KOG3214 Uncharacterized Zn rib 20.6 41 0.00089 30.7 0.6 16 36-51 19-34 (109)
305 KOG2150 CCR4-NOT transcription 20.5 1.4E+03 0.031 26.8 17.9 26 400-425 127-152 (575)
306 TIGR01642 U2AF_lg U2 snRNP aux 20.4 1.5E+02 0.0033 32.7 5.0 47 123-180 297-346 (509)
307 TIGR03185 DNA_S_dndD DNA sulfu 20.2 1.4E+03 0.03 26.6 28.7 23 147-171 135-157 (650)
308 KOG2606 OTU (ovarian tumor)-li 20.2 4.5E+02 0.0098 28.4 8.1 29 396-424 46-74 (302)
309 TIGR03017 EpsF chain length de 20.2 1.1E+03 0.024 25.5 15.2 57 256-312 253-309 (444)
310 PF09727 CortBP2: Cortactin-bi 20.2 9.2E+02 0.02 24.5 14.9 45 313-357 133-177 (192)
311 PF07246 Phlebovirus_NSM: Phle 20.1 7.4E+02 0.016 26.3 9.6 44 136-181 67-112 (264)
312 PRK10778 dksA RNA polymerase-b 20.1 1.5E+02 0.0033 28.5 4.4 57 466-522 84-142 (151)
No 1
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=100.00 E-value=8.9e-46 Score=333.86 Aligned_cols=115 Identities=53% Similarity=0.990 Sum_probs=88.2
Q ss_pred CCceeeecceEEEeecccccc-CCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHHHH
Q 008199 114 HDEKFVWPWTGIVVNIPTRRA-EDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFE 192 (574)
Q Consensus 114 ~de~iVWPwmgIi~N~~t~e~-~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~fe 192 (574)
+|++|||||||||+||+| ++ ++|+++|+|+++|+++|+. |+|.+|+||||+.||+|+|||+|++||+||+||++||
T Consensus 1 qdd~~VWPwmgIi~N~~~-~~~~~g~~~g~~~~~l~~~l~~--f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 1 QDDLIVWPWMGIIVNIPT-EKDDDGRWVGMSNEELLDKLAE--FNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp ---EEEES-EEEEE-----EE-TTS-EE---SHHHHHHHHH-----SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEcCcc-ccCCCCceeccCHHHHHHHHHh--cCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence 589999999999999999 65 6899999999999999999 9999999999999999999999999999999999999
Q ss_pred HHhhhcCCChhhhhhhccCCCcceeeeeccCCCCCCCcc
Q 008199 193 KAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNII 231 (574)
Q Consensus 193 ~~Fe~~~~GKkdW~~~~~~~~~LYGwvAradD~~~~~~i 231 (574)
+||+.+||||+||.+++..+++||||||++|||++.|||
T Consensus 78 ~~F~~~~~Gr~dW~~~~~~~~~lYGw~A~~dD~~~~~~i 116 (116)
T PF03468_consen 78 KHFEAQGHGRKDWERRRGGGSQLYGWVARADDYNSPGPI 116 (116)
T ss_dssp HHHHHTT-SHHHHT-SSS---S-EEEE-BHHHHHSSSHH
T ss_pred HHHHHcCCCHHHHhhccCCCCceeeeeCchhhccCCCCC
Confidence 999999999999999887899999999999999999986
No 2
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=99.94 E-value=1.2e-27 Score=219.68 Aligned_cols=66 Identities=62% Similarity=1.066 Sum_probs=65.0
Q ss_pred eecCCCCchHHHHHHHhhcChhhHHHHHHHHHHHHHHhhcCCCCCccEEEEeCCceeEeeccCCcc
Q 008199 504 KRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKVCISLISKF 569 (574)
Q Consensus 504 KrmGeLd~kpF~~ack~k~~~~~~~~~a~~lcS~Wq~~l~dp~WhPFkvv~~~g~~kevi~e~~~~ 569 (574)
||||+||.+||+.||++||++++|+++|++|||+||++|+||+|||||||+++|+.++|||++|++
T Consensus 1 KrMGeLd~kpF~~Ack~k~~~eeae~~A~~LcS~Wqe~ikdp~WhPFkvv~~~g~~~evi~edDek 66 (132)
T PF03469_consen 1 KRMGELDEKPFLNACKRKYPEEEAEVKAAELCSLWQEEIKDPEWHPFKVVTVDGKEKEVIDEDDEK 66 (132)
T ss_pred CcccccChHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhhCCCccceEEeccCCcccccccCchHH
Confidence 899999999999999999999999999999999999999999999999999999999999999986
No 3
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=99.70 E-value=5.5e-18 Score=127.82 Aligned_cols=43 Identities=67% Similarity=1.175 Sum_probs=39.9
Q ss_pred ccCCCCCCccccChHHHHhhhhcCCCCCCcccchHHHHhHHHHH
Q 008199 43 CPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALA 86 (574)
Q Consensus 43 CP~C~gkkk~~y~~~~LLqHA~gvg~~ss~R~a~k~ka~H~aLa 86 (574)
||||++++|++|.|++|||||+|||++++.|.+ +++|+|||||
T Consensus 1 CP~C~~kkk~~Y~~~~LlqHA~gvg~~~~~r~~-k~ka~HrALa 43 (43)
T PF03470_consen 1 CPFCPGKKKQDYKYRELLQHASGVGASSSRRSA-KEKANHRALA 43 (43)
T ss_pred CCCCCCCCCcceehhHHHHHHHhhCcCcccchH-HHHHhhhhhC
Confidence 999999999999999999999999976667777 9999999996
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.74 E-value=2.1 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=15.3
Q ss_pred CCcccccCchhHHHHHHhcCCCCc
Q 008199 136 DGRSVGESGSKLRDELIRRGFNPT 159 (574)
Q Consensus 136 dg~~~G~s~~~L~~~l~~~GF~p~ 159 (574)
||..+ +...+.+.|...||.|.
T Consensus 113 n~~~~--~~~~~~~~l~~~~~~~~ 134 (1164)
T TIGR02169 113 NGQRV--RLSEIHDFLAAAGIYPE 134 (1164)
T ss_pred CCccc--cHHHHHHHHHHcCCCcC
Confidence 55543 56788888888787664
No 5
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.67 E-value=1.7 Score=49.41 Aligned_cols=67 Identities=27% Similarity=0.379 Sum_probs=42.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 008199 237 KIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNE 303 (574)
Q Consensus 237 K~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yne 303 (574)
.+.+|.........+.......|..|...+....+....|+..+..++.+...+-+|++.|...+.+
T Consensus 151 E~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 151 EKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455666666777777777777777777777777777777777666655443
No 6
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.61 E-value=1.4 Score=52.99 Aligned_cols=186 Identities=22% Similarity=0.236 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHH-------------------------
Q 008199 244 ISEMMEEEARKQNLLV--SNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDR------------------------- 296 (574)
Q Consensus 244 i~ei~~E~~rk~~~lv--~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~------------------------- 296 (574)
-.+|..++.++....- +.|..+|-.-++.+..|+.-....--.+..+|+|+-.
T Consensus 279 ekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~e 358 (1195)
T KOG4643|consen 279 EKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELE 358 (1195)
T ss_pred HHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhh
Confidence 3456666665554444 5666777777777777777666666666666666411
Q ss_pred ----------HHH--HHHHHHHH---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHH
Q 008199 297 ----------LLQ--SYNEEIKK---------IQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDR 355 (574)
Q Consensus 297 ----------l~~--~yneEi~k---------mQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er 355 (574)
|-. +|.-+|.. .|....+....=.-+-++...-|+-+-+.|+-|-.++.++-++-+..-
T Consensus 359 n~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~ 438 (1195)
T KOG4643|consen 359 NESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLE 438 (1195)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23222222 111111111222222233333344455556666666667788888888
Q ss_pred HHHHHHHHHHhhhhchhHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHhhhhh
Q 008199 356 KILAEEIEKNAMRNNSLQLASLVQQK---ADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA----LALEIERLKGSL 428 (574)
Q Consensus 356 ~kl~~e~~kn~~~~~~l~lA~~Eq~k---ade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~----LELEi~qLkg~L 428 (574)
++|..|.++--..++++..+.-+|++ ++..++.+...+..+-++++++|..|-+-|+..+. |.-.+..|+.++
T Consensus 439 K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~ 518 (1195)
T KOG4643|consen 439 KKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQY 518 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998988888888888888888844 56667888888888999999998888877766542 333444444444
Q ss_pred h
Q 008199 429 N 429 (574)
Q Consensus 429 ~ 429 (574)
+
T Consensus 519 k 519 (1195)
T KOG4643|consen 519 K 519 (1195)
T ss_pred H
Confidence 4
No 7
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.61 E-value=0.92 Score=53.66 Aligned_cols=216 Identities=26% Similarity=0.382 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhh---------hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 008199 258 LVSNLTNMIEVKDKHLEEMKERFT---------ETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKL 328 (574)
Q Consensus 258 lv~~L~n~i~~kn~~l~elE~k~~---------e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~ 328 (574)
-+.+|..++..+.+.+..+..++. ....+|.....+++++....++....-.+...+ +.+.++.
T Consensus 400 kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~E-------ele~~~~ 472 (775)
T PF10174_consen 400 KIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQE-------ELETYQK 472 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 356677777777777777777776 444666677777777777766443222211122 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcHHHHH---HHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHH
Q 008199 329 QLESQKKELELRGEELEKRETQNENDRK---ILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKK--QKEDLHNR 403 (574)
Q Consensus 329 eLe~k~~eL~~r~k~L~k~~~~~~~er~---kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkr--Eke~~~~k 403 (574)
++..-+.++++=.++|..++.+-+.-|. +|..-..| +.+.+.-+.++=.+..+.+-+|....++ ...++..+
T Consensus 473 e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K---~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r 549 (775)
T PF10174_consen 473 ELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEK---KDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDR 549 (775)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccch---hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcch
Confidence 3333333333333334333333222111 22111112 2344555555555666777777777665 23466778
Q ss_pred HHHHHHHHhHHH----HHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--Hhhc
Q 008199 404 IIQLEKQLDAKQ----ALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIR--ERKS 477 (574)
Q Consensus 404 i~~LekqL~~kQ----~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~k--er~s 477 (574)
|..||+.....- +-..||.+|.+-|.-+-- +-...-++|..|..+|++--..+......++++-+. +|++
T Consensus 550 ~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~----EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~ 625 (775)
T PF10174_consen 550 IQQLEQEVTRYREESEKAQAEVERLLDILREAEN----EKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKR 625 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhh
Confidence 888888654432 225677777774443311 111223678888888877666666666666665555 8889
Q ss_pred chHHHHHHHH
Q 008199 478 NDELQDARKE 487 (574)
Q Consensus 478 NdELqeARk~ 487 (574)
..+|.+|+++
T Consensus 626 ~elleea~Re 635 (775)
T PF10174_consen 626 AELLEEALRE 635 (775)
T ss_pred hHHHHHHHhh
Confidence 9999999883
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.32 E-value=5.7 Score=51.37 Aligned_cols=247 Identities=20% Similarity=0.298 Sum_probs=125.5
Q ss_pred cceeeeeccC------CCCCCCcchhhhhcccCCCCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008199 214 GLYAWVARSD------DYNLKNIIGDHLRKIGDLKTISEM--------------MEEEARKQNLLVSNLTNMIEVKDKHL 273 (574)
Q Consensus 214 ~LYGwvArad------D~~~~~~iG~~LrK~gdLKTi~ei--------------~~E~~rk~~~lv~~L~n~i~~kn~~l 273 (574)
..=||+|+.+ +..+.-+|.+..|.+..||+-+=. ..+..++....+..|..++++.....
T Consensus 782 ~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~ 861 (1930)
T KOG0161|consen 782 AIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKR 861 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4456777654 333334788999999888865432 13444555555555555555555555
Q ss_pred HHHHHHhhhchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHH
Q 008199 274 EEMKERFTETSNSVEKLMEE----KDRLLQSYNEEIKKIQLSARDHFQRIFT-------DHEKLKLQLESQKKELELRGE 342 (574)
Q Consensus 274 ~elE~k~~e~s~sL~~~meE----k~~l~~~yneEi~kmQ~~a~~~~~rI~~-------e~ekl~~eLe~k~~eL~~r~k 342 (574)
.++|.+.-.+.....-+..+ ++..-. .+|+..--..-+..+++++. +.+.....|+.++++++..+.
T Consensus 862 ~ele~~~~~~~~e~~~l~~~l~~e~~~~~~--aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~ 939 (1930)
T KOG0161|consen 862 KELEEKLVKLLEEKNDLQEQLQAEKENLAE--AEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQ 939 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444443333332222211 111111 22222222222333333332 334455667777788887777
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Q 008199 343 ELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQK--------------KQKEDLHNRIIQLE 408 (574)
Q Consensus 343 ~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hk--------------rEke~~~~ki~~Le 408 (574)
.|.+.-..-+..+.+++.|+.....+...|.-+...+...-..+.+...... .+-..+-+...+||
T Consensus 940 ~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle 1019 (1930)
T KOG0161|consen 940 ELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLE 1019 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666667777787777776666666665554443333333222211111 11111222233333
Q ss_pred HHHh-------HHHH----HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 008199 409 KQLD-------AKQA----LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEAL 466 (574)
Q Consensus 409 kqL~-------~kQ~----LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~l 466 (574)
.+|+ ..+. +|-.+..|.|.|..+. +...+++.++++|...|..++.++..|.+-
T Consensus 1020 ~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~----e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1020 QQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQ----ESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 2222 2333334555553321 234446778888888888888888776543
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.30 E-value=4.5 Score=49.98 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 008199 442 VLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELI 489 (574)
Q Consensus 442 ~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI 489 (574)
....+..+.+.+++-.+.+..++.--..+-...+..+++++.++..+.
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 491 (1163)
T COG1196 444 LNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLD 491 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666777777888888876543
No 10
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.02 E-value=4 Score=47.67 Aligned_cols=216 Identities=20% Similarity=0.301 Sum_probs=107.0
Q ss_pred hhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 008199 233 DHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM-EEKDRLLQSYNEEIKKIQLS 311 (574)
Q Consensus 233 ~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~m-eEk~~l~~~yneEi~kmQ~~ 311 (574)
+|||+. .|+-.--+..++.|...+|-+-+-.+++..-+.. ..--+++.|.- -|-+.|...-..+|.+|.+
T Consensus 789 rflRrQ-eLreLR~LQkeE~R~qqqL~~k~~~q~Eq~~rrF-------eqE~~~kkr~~d~EmenlErqQkq~iE~~Eq- 859 (1187)
T KOG0579|consen 789 RFLRRQ-ELRELRRLQKEEARQQQQLQAKGIKQVEQQARRF-------EQEQTNKKRTSDLEMENLERQQKQEIEDTEQ- 859 (1187)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 677776 7777777888888877777666555444332221 11111222211 1233444444444444443
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----HhhhcHHHHH-HHHHHHHHHhhhh--chhHHHHHHHHhhh
Q 008199 312 ARDHFQRIFTDHEKLKLQLESQKKELELRGEELEK-----RETQNENDRK-ILAEEIEKNAMRN--NSLQLASLVQQKAD 383 (574)
Q Consensus 312 a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k-----~~~~~~~er~-kl~~e~~kn~~~~--~~l~lA~~Eq~kad 383 (574)
.|..+.-++..++|.|-+--|+....+-++--| +.-.+...|+ -|.+-+++...+. ..-..-+.-||-++
T Consensus 860 --~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~le 937 (1187)
T KOG0579|consen 860 --AHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQNLE 937 (1187)
T ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 233333344444444444444433333222111 1111111111 1111111111110 01122344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHH
Q 008199 384 ENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQAL---------ALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLR 454 (574)
Q Consensus 384 e~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~L---------ELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ 454 (574)
-.+.+++++||.|+-.+...- |.+||.| |||-.||+.+-+..|..--|. -.. --+.-|.
T Consensus 938 ~~lkrm~~~~k~ema~iErec------Lm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlKDq--Yfl----qRhqlL~ 1005 (1187)
T KOG0579|consen 938 AMLKRMAEKHKEEMASIEREC------LMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQ--YFL----QRHQLLA 1005 (1187)
T ss_pred HHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH--HHH----HHHHHHH
Confidence 777888888887776665554 3444443 888888888888777632211 111 1123455
Q ss_pred HHHhhhhhHHHHHHHHH
Q 008199 455 EKEGELDDLEALNQTLI 471 (574)
Q Consensus 455 ek~~el~~~e~lnq~Li 471 (574)
--+.+|+.|+-.||.+|
T Consensus 1006 rHekE~eQmqrynQr~i 1022 (1187)
T KOG0579|consen 1006 RHEKEMEQMQRYNQREI 1022 (1187)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677888888888887
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.99 E-value=5.5 Score=51.46 Aligned_cols=206 Identities=21% Similarity=0.278 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 008199 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKK 335 (574)
Q Consensus 256 ~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~ 335 (574)
...+.....+|..-...++..|.+.++......++..++-.|......|...... ..-+..--..-+.+|+..++
T Consensus 837 ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~-----aee~~~~~~~~k~~le~~l~ 911 (1930)
T KOG0161|consen 837 EEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAE-----AEELLERLRAEKQELEKELK 911 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666777777777777777777776666665555544333 33333344455677888888
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--
Q 008199 336 ELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDA-- 413 (574)
Q Consensus 336 eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~-- 413 (574)
+++.+-.+.+++.+..+..+++++++.+.....-.-+.. =..+-.+||..+..+|..|+.++..
T Consensus 912 ~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~--------------~~~k~~~Ek~~~e~~~~~l~~e~~~~~ 977 (1930)
T KOG0161|consen 912 ELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELEL--------------TLQKLELEKNAAENKLKNLEEEINSLD 977 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777888777666654333222222 2223334555555555555544433
Q ss_pred ---------HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHH
Q 008199 414 ---------KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDA 484 (574)
Q Consensus 414 ---------kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeA 484 (574)
|-.||.-+.+|...|+..+-. -....+....+...|.+.+..|+.....++.+-..-|+--.+|+.+
T Consensus 978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek----~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~ 1053 (1930)
T KOG0161|consen 978 ENISKLSKEKKELEERIRELQDDLQAEEEK----AKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDL 1053 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334666666776666654321 1233455677777777777777777777777776666666666333
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.93 E-value=4.7 Score=50.00 Aligned_cols=225 Identities=19% Similarity=0.241 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008199 260 SNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELEL 339 (574)
Q Consensus 260 ~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~ 339 (574)
..+...+..-+..+..++..+++....++.-...-+.-+...+.++..+++.-..+...=+.+-...-..|.+-..+++.
T Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~ 363 (1201)
T PF12128_consen 284 PELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELEN 363 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHH
Confidence 33333333334444444444444444444444333444445555555555555444433334444444444445555555
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----H
Q 008199 340 RGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDA-----K 414 (574)
Q Consensus 340 r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~-----k 414 (574)
...+++-+......-..+....+++-....+. ....... . .-.+-+...+.++...+.+..|+.++.+ .
T Consensus 364 l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~-~~~~~~~---~--~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 437 (1201)
T PF12128_consen 364 LQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR-QQERLQA---Q--QDEIREEKAERREQIEEEYQALEQELRQQSQEQL 437 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444333333333333321111111 0111111 0 1122222233344444555555555541 2
Q ss_pred HHHHHHHHHhhhhhhhhhccCCC--CchHHHHH-------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHH
Q 008199 415 QALALEIERLKGSLNVMKHMGDD--GDIEVLQK-------METVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDAR 485 (574)
Q Consensus 415 Q~LELEi~qLkg~L~VmKhm~~~--~d~~~~~k-------~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeAR 485 (574)
+.+.-+-.+++..|..+++.-.. -.++.... ++...+.+......+..++.--+.+-..-.+.+++|+.+|
T Consensus 438 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 517 (1201)
T PF12128_consen 438 EELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQAR 517 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333334333332221 22333333 3444444444444444444444445445555666777766
Q ss_pred HHHHH
Q 008199 486 KELIN 490 (574)
Q Consensus 486 k~LI~ 490 (574)
.++-.
T Consensus 518 ~~~~~ 522 (1201)
T PF12128_consen 518 RELEE 522 (1201)
T ss_pred HHHHH
Confidence 65433
No 13
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=6.4 Score=48.34 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 008199 394 KKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVM 431 (574)
Q Consensus 394 krEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vm 431 (574)
+++.+.+.++|..+|+.|.. +.+.+.+.+|.++|-
T Consensus 471 ~~~t~~~~~e~~~~ekel~~---~~~~~n~~~~e~~va 505 (1293)
T KOG0996|consen 471 KQETEGIREEIEKLEKELMP---LLKQVNEARSELDVA 505 (1293)
T ss_pred hhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45666677777777777753 344455555555543
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.89 E-value=5.8 Score=47.53 Aligned_cols=7 Identities=14% Similarity=0.126 Sum_probs=2.6
Q ss_pred ChhhhHh
Q 008199 181 DWPGLHN 187 (574)
Q Consensus 181 dw~Gf~n 187 (574)
|..-|..
T Consensus 606 dl~~~~~ 612 (1179)
T TIGR02168 606 DLVKFDP 612 (1179)
T ss_pred HHhcccH
Confidence 3333333
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.75 E-value=6.7 Score=47.23 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=13.0
Q ss_pred HhhhhhHHHHHHHHHHHHhhcchHHHHHHHHH
Q 008199 457 EGELDDLEALNQTLIIRERKSNDELQDARKEL 488 (574)
Q Consensus 457 ~~el~~~e~lnq~Li~ker~sNdELqeARk~L 488 (574)
..+++.++.....+-..-.....+|+..+..+
T Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l 485 (1164)
T TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444555554443
No 16
>PRK11637 AmiB activator; Provisional
Probab=95.61 E-value=4.2 Score=44.57 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=31.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 008199 317 QRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEK 364 (574)
Q Consensus 317 ~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~k 364 (574)
..+++.....+.+|++++.+|+..-.+|..+.+.....+..|+.++.+
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667777777777777777766666666666666555544
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.57 E-value=8.9 Score=47.45 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHH-hhcCCCCCccEEEE
Q 008199 528 EERASELCSLWEE-YLKDPDWHPFKVIT 554 (574)
Q Consensus 528 ~~~a~~lcS~Wq~-~l~dp~WhPFkvv~ 554 (574)
+..|......|-. .+.-.+.-|-..|.
T Consensus 551 ~~~a~~~i~~lk~~~~gr~tflpl~~i~ 578 (1163)
T COG1196 551 EEVAKKAIEFLKENKAGRATFLPLDRIK 578 (1163)
T ss_pred hHHHHHHHHHHhhcCCCccccCchhhhc
Confidence 3456666777765 55555555554444
No 18
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.18 E-value=3.8 Score=40.86 Aligned_cols=159 Identities=23% Similarity=0.310 Sum_probs=89.8
Q ss_pred HHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008199 269 KDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRE 348 (574)
Q Consensus 269 kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~ 348 (574)
.|+.|+.+...-...-......-.+--++++.|++|++-++...|....++-.-..+++ +.+..+..+....+.|.++.
T Consensus 34 ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk-~~~~el~k~~~~l~~L~~L~ 112 (194)
T PF15619_consen 34 ENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK-DKDEELLKTKDELKHLKKLS 112 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34444444433222222333333455788999999999999999888776655555443 35555555666666666654
Q ss_pred h-hcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 008199 349 T-QNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGS 427 (574)
Q Consensus 349 ~-~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~ 427 (574)
. .+=.+|.+|.... .......++.-.+|..|+++| +|.-.-.+-.
T Consensus 113 ~dknL~eReeL~~kL----------------------------~~~~~~l~~~~~ki~~Lek~l------eL~~k~~~rq 158 (194)
T PF15619_consen 113 EDKNLAEREELQRKL----------------------------SQLEQKLQEKEKKIQELEKQL------ELENKSFRRQ 158 (194)
T ss_pred HcCCchhHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHH
Confidence 4 3444455553222 222344555566777777754 4444444444
Q ss_pred hhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 008199 428 LNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERK 476 (574)
Q Consensus 428 L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~ 476 (574)
|.+. .+|+.++..++..-..++ +.|+|.|-.|+|.
T Consensus 159 l~~e-----------~kK~~~~~~~~~~l~~ei---~~L~~klkEKer~ 193 (194)
T PF15619_consen 159 LASE-----------KKKHKEAQEEVKSLQEEI---QRLNQKLKEKERE 193 (194)
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhc
Confidence 4432 445555555555444443 4677777777764
No 19
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.16 E-value=1.9 Score=47.98 Aligned_cols=77 Identities=22% Similarity=0.278 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHh-hhhchhHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Q 008199 337 LELRGEELEKRETQNENDRKILAEEIEKNA-MRNNSLQLASLVQQKADENVRKLA-EDQKKQKEDLHNRIIQLEKQLDAK 414 (574)
Q Consensus 337 L~~r~k~L~k~~~~~~~er~kl~~e~~kn~-~~~~~l~lA~~Eq~kade~vlkLv-e~hkrEke~~~~ki~~LekqL~~k 414 (574)
--+.|-++++.=-+.+.+-..|++.+-+-. .-.+.|++...|....+-..|-|- |.||+||+. |.++
T Consensus 444 svsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eken-----------l~ER 512 (527)
T PF15066_consen 444 SVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKEN-----------LEER 512 (527)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------HHHH
Confidence 344566666666666666666666553322 234778887777777777777774 456666664 4455
Q ss_pred HHHHHHHHHh
Q 008199 415 QALALEIERL 424 (574)
Q Consensus 415 Q~LELEi~qL 424 (574)
|+|-...+.|
T Consensus 513 qkLKs~leKL 522 (527)
T PF15066_consen 513 QKLKSRLEKL 522 (527)
T ss_pred HHHHHHHHHH
Confidence 5655544443
No 20
>PRK11637 AmiB activator; Provisional
Probab=95.03 E-value=6.8 Score=42.94 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhc
Q 008199 386 VRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKH 433 (574)
Q Consensus 386 vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKh 433 (574)
-..+++..+..+..+.....+|+.++...+.+.-+.++-+..|+..+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~ 215 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN 215 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888888888888888888888887776553
No 21
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.80 E-value=12 Score=44.58 Aligned_cols=133 Identities=16% Similarity=0.228 Sum_probs=70.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHH----HHHHHHHHHHh-------hhhchhHHHHHHHHhhhHHH
Q 008199 318 RIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDR----KILAEEIEKNA-------MRNNSLQLASLVQQKADENV 386 (574)
Q Consensus 318 rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er----~kl~~e~~kn~-------~~~~~l~lA~~Eq~kade~v 386 (574)
.-..+++-+..+|+.+|+.|++|..-|.+--.+-+.-= +-|+.+++--+ .-...|+++.++-.+.--++
T Consensus 256 E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadi 335 (1265)
T KOG0976|consen 256 EQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADI 335 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888999999999999877754222222111 11222222111 11344555555443322223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 008199 387 RKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELD 461 (574)
Q Consensus 387 lkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~ 461 (574)
---.-++++--|-+-++..+|||+-|. +++.+..++.+++-. .+.+..+-++..++++.++++.
T Consensus 336 rc~LlEarrk~egfddk~~eLEKkrd~---al~dvr~i~e~k~nv--------e~elqsL~~l~aerqeQidelK 399 (1265)
T KOG0976|consen 336 RCALLEARRKAEGFDDKLNELEKKRDM---ALMDVRSIQEKKENV--------EEELQSLLELQAERQEQIDELK 399 (1265)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHH---HHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556666667777778877663 445555554444321 1234556666667776666653
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.74 E-value=15 Score=45.39 Aligned_cols=168 Identities=19% Similarity=0.219 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 008199 255 QNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQS------YNEEIKKIQLSARDHFQRIFTDHEKLKL 328 (574)
Q Consensus 255 ~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~------yneEi~kmQ~~a~~~~~rI~~e~ekl~~ 328 (574)
-....+.++|....-.+..+++|...-..-..|.++.....++-.. -..|+++|=..++..+++.-.+..+|..
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~ 454 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE 454 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH
Confidence 4555666666677777777777776666666666655444333322 2345777777778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 329 QLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLE 408 (574)
Q Consensus 329 eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~Le 408 (574)
.++.-.++|+---..|++...---.+..+++.++..-. ..+.-|.-+-+-|....--|. .-.+.+.++...|.
T Consensus 455 ~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~---~~~n~~~~e~~vaesel~~L~----~~~~~~~~~~e~lk 527 (1293)
T KOG0996|consen 455 LLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLL---KQVNEARSELDVAESELDILL----SRHETGLKKVEELK 527 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 88877777776655555544444445555554444321 112222223232322222222 22345566666666
Q ss_pred HHHhH----HHHHHHHHHHhhhhhh
Q 008199 409 KQLDA----KQALALEIERLKGSLN 429 (574)
Q Consensus 409 kqL~~----kQ~LELEi~qLkg~L~ 429 (574)
.+|.+ .++.--++-.+++.|+
T Consensus 528 ~~L~~~~~~~~e~~~~l~~~k~~l~ 552 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKTELDDLKEELP 552 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66665 3333344444444333
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.32 E-value=12 Score=42.76 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 008199 400 LHNRIIQLEKQLDAKQALALEIERLKGSLNVM 431 (574)
Q Consensus 400 ~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vm 431 (574)
+-..+.+++..+...+.++.+...|+.+|..+
T Consensus 264 Lk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~ 295 (546)
T PF07888_consen 264 LKETVVQLKQEETQAQQLQQENEALKEQLRSA 295 (546)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 33445555555555566666666666665554
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.23 E-value=18 Score=44.28 Aligned_cols=107 Identities=26% Similarity=0.353 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHhhcchHHHHHHHHHHHHHHh-----------------------
Q 008199 440 IEVLQKMETVLKDLREKEGELDDLEALNQT--LIIRERKSNDELQDARKELINALKE----------------------- 494 (574)
Q Consensus 440 ~~~~~k~~~l~~~L~ek~~el~~~e~lnq~--Li~ker~sNdELqeARk~LI~~l~~----------------------- 494 (574)
+++++.|+.|+...+.-++.+.+++.+... +--++.+--+++..+=+++|+.+.+
T Consensus 867 ~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~ 946 (1074)
T KOG0250|consen 867 AEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDELKVTLDELLKALGEALESREQKYQKFRKLLTRRATEE 946 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999888 4456666667777665555554311
Q ss_pred ---------c---------cCCcccceeecCCCCchHHHHHHHhhcCh-hhHHHHHHHHHHHHHHhhcCCCCCccEEE
Q 008199 495 ---------L---------SGRAHIGLKRMGELDNKPFLEVMNRKYNE-EEAEERASELCSLWEEYLKDPDWHPFKVI 553 (574)
Q Consensus 495 ---------~---------~~~~~IgiKrmGeLd~kpF~~ack~k~~~-~~~~~~a~~lcS~Wq~~l~dp~WhPFkvv 553 (574)
+ ...-.|+||+-+.=+.+|+.+. +-++. |--=.+++.|-|+|. +.=+||+..
T Consensus 947 F~~~l~~R~~sg~l~~~~e~ktl~i~v~~~~~~~~~~v~d~--~gLSGGERSFsTv~lllsLW~-----~me~Pfr~L 1017 (1074)
T KOG0250|consen 947 FDALLGKRGFSGKLEFDHEEKTLSISVKLPTSGNEKAVRDT--RGLSGGERSFSTVCLLLSLWE-----VMECPFRAL 1017 (1074)
T ss_pred HHHHhhccccCcceeecccccccchhhccCCCCcccccccc--cccCcccchHHHHHHHHHHhH-----hhcCchhhh
Confidence 1 1234588877777666544433 22332 333456667889996 567888754
No 25
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.97 E-value=21 Score=44.20 Aligned_cols=189 Identities=20% Similarity=0.254 Sum_probs=106.7
Q ss_pred HHHHhhhchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcH
Q 008199 276 MKERFTETSNSVEKLMEEK---DRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNE 352 (574)
Q Consensus 276 lE~k~~e~s~sL~~~meEk---~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~ 352 (574)
+...+++....+...-+++ ..+...+.+|+... +.-.++.+-..+.-.+++.+|+.....+-.......++.....
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~ 570 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSK 570 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhh
Confidence 3355566665555555554 34457788888888 4556667777777778888888777766666666666665555
Q ss_pred HHHHHHHHHHHHHhh---hhchhHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 008199 353 NDRKILAEEIEKNAM---RNNSLQLASLVQQKADENVRKLAED-------QKKQKEDLHNRIIQLEKQLDAKQALALEIE 422 (574)
Q Consensus 353 ~er~kl~~e~~kn~~---~~~~l~lA~~Eq~kade~vlkLve~-------hkrEke~~~~ki~~LekqL~~kQ~LELEi~ 422 (574)
.--+.++++.+.+.. +.+.|+.+...--+....+.-.++. +..+..++-+.|.-|+.-+.+++..++-++
T Consensus 571 e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred hhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 555556666553332 2333333322221222223333333 345667778888888888888888877777
Q ss_pred HhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 008199 423 RLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTL 470 (574)
Q Consensus 423 qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~L 470 (574)
+|+-... .+..+ ++-...=..+.-+|+....+++.+.+-|+.|
T Consensus 651 el~r~~~--e~~~~---~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 651 ELKRENQ--ERISD---SEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654433 12111 1100111234445555555555555656555
No 26
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.97 E-value=18 Score=43.37 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=9.5
Q ss_pred CchhHHHHHHhcCCCC
Q 008199 143 SGSKLRDELIRRGFNP 158 (574)
Q Consensus 143 s~~~L~~~l~~~GF~p 158 (574)
+...+.+.|...|+.|
T Consensus 120 ~~~~~~~~l~~~~i~~ 135 (1179)
T TIGR02168 120 RLKDIQDLFLDTGLGK 135 (1179)
T ss_pred cHHHHHHHHhccCCCc
Confidence 3355667777755544
No 27
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.91 E-value=12 Score=44.25 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 008199 262 LTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEE 304 (574)
Q Consensus 262 L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneE 304 (574)
++..|....+.-++|+.+++..+.+.+.-++-...|...+.+|
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666777777666666555544444444444444
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.60 E-value=5.2 Score=42.50 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhhhhhhhhhc
Q 008199 394 KKQKEDLHNRIIQLEKQLDA-KQALALEIERLKGSLNVMKH 433 (574)
Q Consensus 394 krEke~~~~ki~~LekqL~~-kQ~LELEi~qLkg~L~VmKh 433 (574)
..++.++...|.++++.++. +..=.-||.+|+.++..+.+
T Consensus 250 ~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 250 EEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34455556666666666552 22345555566555555544
No 29
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.51 E-value=21 Score=42.62 Aligned_cols=68 Identities=29% Similarity=0.333 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCch----------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 008199 401 HNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDI----------EVLQKMETVLKDLREKEGELDDLEALNQTL 470 (574)
Q Consensus 401 ~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~----------~~~~k~~~l~~~L~ek~~el~~~e~lnq~L 470 (574)
-.+|..||+-|.. ||.||..|+..+.+...--+..+. ..|.+||.+.-+|..+..++..+.+-..|+
T Consensus 237 d~ki~~lEr~l~~---le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~ 313 (775)
T PF10174_consen 237 DTKIASLERMLRD---LEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETL 313 (775)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888876 999999999877766552221211 124579999999999998887666655555
Q ss_pred H
Q 008199 471 I 471 (574)
Q Consensus 471 i 471 (574)
.
T Consensus 314 ~ 314 (775)
T PF10174_consen 314 E 314 (775)
T ss_pred H
Confidence 4
No 30
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.70 E-value=31 Score=42.34 Aligned_cols=69 Identities=23% Similarity=0.229 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhh---hchHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 252 ARKQNLLVSNLTNMIEVKDKHLEEMKERFT---ETSNSVEKLMEE-----------KDRLLQSYNEEIKKIQLSARDHFQ 317 (574)
Q Consensus 252 ~rk~~~lv~~L~n~i~~kn~~l~elE~k~~---e~s~sL~~~meE-----------k~~l~~~yneEi~kmQ~~a~~~~~ 317 (574)
...+..+|+.+...|..-.+++++.+.+.. .+.....+.+.= +++-...-.++|.+.|...-...+
T Consensus 223 ~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ 302 (1074)
T KOG0250|consen 223 LDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQE 302 (1074)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888888888777765 233334443322 344445555666666666655444
Q ss_pred HHH
Q 008199 318 RIF 320 (574)
Q Consensus 318 rI~ 320 (574)
+|-
T Consensus 303 ki~ 305 (1074)
T KOG0250|consen 303 KIE 305 (1074)
T ss_pred HHH
Confidence 443
No 31
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.62 E-value=20 Score=39.99 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q 008199 249 EEEARKQNLLVSNLTNMIEVKDKHL 273 (574)
Q Consensus 249 ~E~~rk~~~lv~~L~n~i~~kn~~l 273 (574)
.+..+...+.+..|..++...+..+
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i 197 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQI 197 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333
No 32
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=2.8 Score=39.00 Aligned_cols=93 Identities=25% Similarity=0.380 Sum_probs=69.5
Q ss_pred HHHHHHHHH----HHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHH---------HHHHHHHHHHHhhhhhHH
Q 008199 398 EDLHNRIIQ----LEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKM---------ETVLKDLREKEGELDDLE 464 (574)
Q Consensus 398 e~~~~ki~~----LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~---------~~l~~~L~ek~~el~~~e 464 (574)
++.+++..+ |+..+.+||.||.++...+-.|+-..-++ +|..+.+++ +++..+|+++.+.| +
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~--eD~~vYk~VG~llvk~~k~~~~~eL~er~E~L---e 83 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLD--EDAPVYKKVGNLLVKVSKEEAVDELEERKETL---E 83 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cccHHHHHhhhHHhhhhHHHHHHHHHHHHHHH---H
Confidence 334444444 44555689999999999998888776664 566777764 56666676666544 6
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHhc
Q 008199 465 ALNQTLIIRERKSNDELQDARKELINALKEL 495 (574)
Q Consensus 465 ~lnq~Li~ker~sNdELqeARk~LI~~l~~~ 495 (574)
---.||-..|+....+|++-+.+|++-|..-
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6778999999999999999999999988753
No 33
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.47 E-value=48 Score=41.78 Aligned_cols=38 Identities=21% Similarity=0.119 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHH
Q 008199 447 ETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDA 484 (574)
Q Consensus 447 ~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeA 484 (574)
+.++.++.....++..+..--..+-..+|.-.|.|.-.
T Consensus 987 e~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 987 EECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333333333444444444433
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=91.43 E-value=37 Score=40.41 Aligned_cols=11 Identities=9% Similarity=-0.227 Sum_probs=4.5
Q ss_pred eeccCCCCCCc
Q 008199 41 FTCPYCPKKRK 51 (574)
Q Consensus 41 ~~CP~C~gkkk 51 (574)
+.|-+=+++.|
T Consensus 25 ~~~i~G~Ng~G 35 (880)
T PRK02224 25 VTVIHGVNGSG 35 (880)
T ss_pred eEEEECCCCCC
Confidence 44444344433
No 35
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.34 E-value=43 Score=40.99 Aligned_cols=41 Identities=34% Similarity=0.612 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 008199 445 KMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELI 489 (574)
Q Consensus 445 k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI 489 (574)
.|.+|...+.+-...|+...+.+-.| -.--||||++||+|-
T Consensus 433 ~i~~l~~si~e~~~r~~~~~~~~~~~----k~~~del~~~Rk~lW 473 (1200)
T KOG0964|consen 433 EIKELESSINETKGRMEEFDAENTEL----KRELDELQDKRKELW 473 (1200)
T ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34444444444444454444444333 233589999999864
No 36
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.30 E-value=44 Score=41.01 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008199 255 QNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQK 334 (574)
Q Consensus 255 ~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~ 334 (574)
....+.+++..|+....++..+.+.++.+...+...-++...|.++--.+|-.--..-.....-.-.+.-+...-|..+.
T Consensus 242 ~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~ 321 (1174)
T KOG0933|consen 242 AEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKK 321 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777777777666666665555555555555444433333444444455555566666677
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHH
Q 008199 335 KELELRGEELEKRETQNENDRKILA 359 (574)
Q Consensus 335 ~eL~~r~k~L~k~~~~~~~er~kl~ 359 (574)
..|+--.+.++++.-.-..+|++|.
T Consensus 322 ~tl~~e~~k~e~i~~~i~e~~~~l~ 346 (1174)
T KOG0933|consen 322 ETLNGEEEKLEEIRKNIEEDRKKLK 346 (1174)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHH
Confidence 7777777777777777777777775
No 37
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.19 E-value=22 Score=37.33 Aligned_cols=146 Identities=23% Similarity=0.325 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhH
Q 008199 294 KDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQ 373 (574)
Q Consensus 294 k~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~ 373 (574)
...+|..|..-...|+.-.++ .-.....+-.+|+++...|+.|-+.| ++++.|-+.+++.-|....-.+.+
T Consensus 18 wk~l~~~ykq~f~~~reEl~E----FQegSrE~EaelesqL~q~etrnrdl-----~t~nqrl~~E~e~~Kek~e~q~~q 88 (333)
T KOG1853|consen 18 WKLLHHEYKQHFLQMREELNE----FQEGSREIEAELESQLDQLETRNRDL-----ETRNQRLTTEQERNKEKQEDQRVQ 88 (333)
T ss_pred HhhhHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666676555544443332 22344445678888888888877765 345566666666666666666677
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHH
Q 008199 374 LASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDA----KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETV 449 (574)
Q Consensus 374 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~----kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l 449 (574)
-+..+-+-.|++. . -+-.||.+++.|-+||+--|. |.+-+.-.+-+..+|+ ....++.=|
T Consensus 89 ~y~q~s~Leddls----q-t~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLn-----------qAIErnAfL 152 (333)
T KOG1853|consen 89 FYQQESQLEDDLS----Q-THAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLN-----------QAIERNAFL 152 (333)
T ss_pred HHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHH-----------HHHHHHHHH
Confidence 7666555444331 1 123567778888887765442 2222222222222222 124566777
Q ss_pred HHHHHHHHhhhhhHH
Q 008199 450 LKDLREKEGELDDLE 464 (574)
Q Consensus 450 ~~~L~ek~~el~~~e 464 (574)
.-+|.||+--|+.+.
T Consensus 153 ESELdEke~llesvq 167 (333)
T KOG1853|consen 153 ESELDEKEVLLESVQ 167 (333)
T ss_pred HHHhhHHHHHHHHHH
Confidence 778888777665543
No 38
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=90.44 E-value=43 Score=39.48 Aligned_cols=151 Identities=27% Similarity=0.309 Sum_probs=96.1
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHH---HHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008199 277 KERFTETSNSVEKLMEEKDRLLQSYNE---EIKKI----------QLSARDHFQRIFTDHEKLKLQLESQKKELELRGEE 343 (574)
Q Consensus 277 E~k~~e~s~sL~~~meEk~~l~~~yne---Ei~km----------Q~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~ 343 (574)
..++.+.+.+...+--|++.+.+.... |+.++ -......++.....+..||.+|++-+.+|.....+
T Consensus 484 kLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~E 563 (786)
T PF05483_consen 484 KLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEE 563 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666555544432 22222 23445677788888889999999999999999888
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHH
Q 008199 344 LEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAK----QALAL 419 (574)
Q Consensus 344 L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~k----Q~LEL 419 (574)
+.-.--.++.-+|..+-++-+...+...|.=-.---+|.-+|-.+.++.-..+...+-++|..--+|+..= -+|++
T Consensus 564 v~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~ 643 (786)
T PF05483_consen 564 VKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQE 643 (786)
T ss_pred HHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766666667777776766665554444333333345666777888887777777777776666665542 24455
Q ss_pred HHHHhhhh
Q 008199 420 EIERLKGS 427 (574)
Q Consensus 420 Ei~qLkg~ 427 (574)
|++.++-+
T Consensus 644 E~e~~kk~ 651 (786)
T PF05483_consen 644 ELENLKKK 651 (786)
T ss_pred HHHHHHhH
Confidence 55555443
No 39
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.75 E-value=77 Score=41.33 Aligned_cols=210 Identities=23% Similarity=0.310 Sum_probs=107.1
Q ss_pred chhhhhcccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHH-------------HHHHHHH
Q 008199 231 IGDHLRKIGD-LKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEK-------------LMEEKDR 296 (574)
Q Consensus 231 iG~~LrK~gd-LKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~-------------~meEk~~ 296 (574)
|=.|||+--+ +-|--++..-+...-.+.|+.+-..|..-+..|...+.++..+..+++. +++-|..
T Consensus 1154 iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~ 1233 (1822)
T KOG4674|consen 1154 IVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKV 1233 (1822)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHH
Confidence 4566666522 2233444455555666777777777777777777777777555554433 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHH
Q 008199 297 LLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLAS 376 (574)
Q Consensus 297 l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~ 376 (574)
|...-.....++| --++.+.++-.+-..|+..|..-.-++.....+|.+++-.++.=++..
T Consensus 1234 LRee~~~~~~k~q-El~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~------------------ 1294 (1822)
T KOG4674|consen 1234 LREENEANLEKIQ-ELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRN------------------ 1294 (1822)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 2222222222221 112222222222222222222222223333333333222222222221
Q ss_pred HHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHH
Q 008199 377 LVQQKADENVRKLAEDQK----KQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKD 452 (574)
Q Consensus 377 ~Eq~kade~vlkLve~hk----rEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~ 452 (574)
-.|++.|+ -+-+.+...|-.|+.+|..++.+--|+...-+.++ ..++++++++..+
T Consensus 1295 ----------q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q----------~~~k~qld~l~~e 1354 (1822)
T KOG4674|consen 1295 ----------QDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ----------EKIKKQLDELNNE 1354 (1822)
T ss_pred ----------HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 12333332 24455556777888888777666555555444444 4667888888888
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhcch
Q 008199 453 LREKEGELDDLEALNQTLIIRERKSND 479 (574)
Q Consensus 453 L~ek~~el~~~e~lnq~Li~ker~sNd 479 (574)
-+.+...+..++++++.|-...+.-|-
T Consensus 1355 ~~~lt~~~~ql~~~~~rL~~~~~e~~~ 1381 (1822)
T KOG4674|consen 1355 KANLTKELEQLEDLKTRLAAALSEKNA 1381 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887766555443
No 40
>PRK09039 hypothetical protein; Validated
Probab=89.60 E-value=33 Score=36.96 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHhc-cCCccccee
Q 008199 478 NDELQDARKELINALKEL-SGRAHIGLK 504 (574)
Q Consensus 478 NdELqeARk~LI~~l~~~-~~~~~IgiK 504 (574)
+.||...|.+++..|.++ +++..|.|.
T Consensus 189 ~~~l~~~~~~~~~~l~~~~~~~~~iri~ 216 (343)
T PRK09039 189 VQELNRYRSEFFGRLREILGDREGIRIV 216 (343)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCCCcEEE
Confidence 468999999999999877 767667766
No 41
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.35 E-value=24 Score=41.72 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 008199 312 ARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKIL 358 (574)
Q Consensus 312 a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl 358 (574)
.|.++.-+......++.+|...+.+-|.=...|..+...-..||..+
T Consensus 444 LRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l 490 (697)
T PF09726_consen 444 LRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSL 490 (697)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666666666666655555555555555555444
No 42
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.14 E-value=24 Score=41.51 Aligned_cols=200 Identities=21% Similarity=0.234 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008199 259 VSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSY----NEEIKKIQLSARDHFQRIFTDHEKLKLQLESQK 334 (574)
Q Consensus 259 v~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~y----neEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~ 334 (574)
...+.-.+...+..+...+..+.-...++..+-.+........ .+...+++..+.+...+...+...+..+|+..+
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~v~ 195 (670)
T KOG0239|consen 116 LSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKESLKLESDLGDLVTELEHVT 195 (670)
T ss_pred hhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555543322111 222223555778888888888888888888877
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008199 335 KELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAK 414 (574)
Q Consensus 335 ~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~k 414 (574)
...+.-..+|.. +..+++.|+.... ....+..++..|+.-....
T Consensus 196 ~~~~~~~~~l~~----~~~~~~~l~~~~~--------------------------------~~~~~~~~~~~l~~~~~~~ 239 (670)
T KOG0239|consen 196 NSISELESVLKS----AQEERRVLADSLG--------------------------------NYADLRRNIKPLEGLESTI 239 (670)
T ss_pred HHHHHHHHHhhh----hHHHHHHHHHHhh--------------------------------hhhhHHHhhhhhhhhhhHH
Confidence 777777766665 2223344432211 1111111222222211111
Q ss_pred HHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHh
Q 008199 415 QALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKE 494 (574)
Q Consensus 415 Q~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI~~l~~ 494 (574)
.+- |..|+..|+.++.-..+-...+.....++++-+..-..-...+.+++..|+.++ .-+++|++|=+-+.+
T Consensus 240 ~~~---i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-----~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 240 KKK---IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-----KEKEERRKLHNEILE 311 (670)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 111 344444444433322222223444455555555555555677778888887655 335778888777777
Q ss_pred ccCCccccee
Q 008199 495 LSGRAHIGLK 504 (574)
Q Consensus 495 ~~~~~~IgiK 504 (574)
+ ..||.|.
T Consensus 312 L--kGnIRV~ 319 (670)
T KOG0239|consen 312 L--KGNIRVF 319 (670)
T ss_pred h--hcCceEE
Confidence 6 3357764
No 43
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.06 E-value=41 Score=37.92 Aligned_cols=87 Identities=25% Similarity=0.402 Sum_probs=69.8
Q ss_pred HHHHHHHHHH-hHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchH
Q 008199 402 NRIIQLEKQL-DAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDE 480 (574)
Q Consensus 402 ~ki~~LekqL-~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdE 480 (574)
.+++.|-+|- |-+|.|.-+..+|+..|.+. +-++++ ..+|.+|+.+|+..-++.+..+.++-+|...--+-.+.
T Consensus 307 ~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~----e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~d 381 (521)
T KOG1937|consen 307 KQMEELTQQWEDTRQPLLQKKLQLREELKNL----ETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDD 381 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc----cchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCch
Confidence 3456666665 45788888888888877664 345666 78999999999999999999999999999877777777
Q ss_pred HHHHHHHHHHHHHhc
Q 008199 481 LQDARKELINALKEL 495 (574)
Q Consensus 481 LqeARk~LI~~l~~~ 495 (574)
.| ||..+.++.++
T Consensus 382 v~--rk~ytqrikEi 394 (521)
T KOG1937|consen 382 VQ--RKVYTQRIKEI 394 (521)
T ss_pred hH--HHHHHHHHHHH
Confidence 77 99999988776
No 44
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.01 E-value=86 Score=40.91 Aligned_cols=167 Identities=18% Similarity=0.299 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHH
Q 008199 258 LVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQ------SYNEEIKKIQLSA-RDHFQRIFTDHEKLKLQL 330 (574)
Q Consensus 258 lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~------~yneEi~kmQ~~a-~~~~~rI~~e~ekl~~eL 330 (574)
-+..|..+|.+-+..+.-|++...++...+...+.+..+|-. ..+.++..-+..+ -..+.+.-.+..+|..+|
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 347777788888888888888888887777777766554432 2223333222211 234455555667777777
Q ss_pred HHHHHHHHHHHHHHHHHh-------hhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008199 331 ESQKKELELRGEELEKRE-------TQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNR 403 (574)
Q Consensus 331 e~k~~eL~~r~k~L~k~~-------~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~k 403 (574)
+++-+.+..=.+.++.+. -....+++.|..+.+.-...+..|.-|--|+.++-..+...-..|.-..+....+
T Consensus 1324 ~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~rk 1403 (1822)
T KOG4674|consen 1324 EEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKAHELMQEDTSRK 1403 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665555555555443 2223344455444444434444444433344444344444445555555555555
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhh
Q 008199 404 IIQLEKQLDAKQALALEIERLKGSL 428 (574)
Q Consensus 404 i~~LekqL~~kQ~LELEi~qLkg~L 428 (574)
.-.+...+. |.-||+.|+.+|
T Consensus 1404 ~e~~~~k~~----~~~e~~sl~eeL 1424 (1822)
T KOG4674|consen 1404 LEKLKEKLE----LSEELESLKEEL 1424 (1822)
T ss_pred HHHHHHHHh----HHHHHHHHHHHH
Confidence 555444444 555555555555
No 45
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.65 E-value=67 Score=39.17 Aligned_cols=100 Identities=25% Similarity=0.388 Sum_probs=58.6
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008199 344 LEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIER 423 (574)
Q Consensus 344 L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~q 423 (574)
|..+-|+--.|+.|+..|.++...+++. +.+-.|.-+|+-+.+...|..|..|.|+-=--|-=++|
T Consensus 387 LRDlsA~ek~d~qK~~kelE~k~sE~~e--------------L~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~q 452 (1243)
T KOG0971|consen 387 LRDLSASEKQDHQKLQKELEKKNSELEE--------------LRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQ 452 (1243)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 3444555556666776666664433322 23344555677777777777777777776666666666
Q ss_pred hhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 008199 424 LKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLII 472 (574)
Q Consensus 424 Lkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ 472 (574)
|-.+ .|+ +++--..|+|.+.+|+.|+.+|-.|+-
T Consensus 453 Ltdk-----nln----------lEekVklLeetv~dlEalee~~EQL~E 486 (1243)
T KOG0971|consen 453 LTDK-----NLN----------LEEKVKLLEETVGDLEALEEMNEQLQE 486 (1243)
T ss_pred HHhh-----ccC----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6532 111 223334556666777777777766663
No 46
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.46 E-value=80 Score=39.85 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhh
Q 008199 400 LHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGEL 460 (574)
Q Consensus 400 ~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el 460 (574)
+...-++|..++..++.|+-++..|+..++-..- +-.++...|..+..++.....++
T Consensus 869 l~~~klkl~~~l~~r~~le~~L~el~~el~~l~~----~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR----EIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHH
Confidence 4555566666788888888888888876653321 12233334444444444444433
No 47
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.43 E-value=64 Score=38.72 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 008199 395 KQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMK 432 (574)
Q Consensus 395 rEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmK 432 (574)
.|...+..+|.++...| |+|--|.+.|..+|.-+.
T Consensus 486 sei~qlqarikE~q~kl---~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 486 SEIDQLQARIKELQEKL---QKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred HHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHhh
Confidence 34444455555444443 344445555555554443
No 48
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=88.38 E-value=0.28 Score=38.66 Aligned_cols=24 Identities=38% Similarity=0.913 Sum_probs=18.5
Q ss_pred CeeeccCCCCCCccccChHHHHhhhhcC
Q 008199 39 EAFTCPYCPKKRKQEYLYKDLLQHASGV 66 (574)
Q Consensus 39 ~~~~CP~C~gkkk~~y~~~~LLqHA~gv 66 (574)
.+|.||||.. .++...|+.|-...
T Consensus 1 ~~f~CP~C~~----~~~~~~L~~H~~~~ 24 (54)
T PF05605_consen 1 DSFTCPYCGK----GFSESSLVEHCEDE 24 (54)
T ss_pred CCcCCCCCCC----ccCHHHHHHHHHhH
Confidence 3799999973 37788999996553
No 49
>PRK02224 chromosome segregation protein; Provisional
Probab=88.28 E-value=63 Score=38.46 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 008199 400 LHNRIIQLEKQL 411 (574)
Q Consensus 400 ~~~ki~~LekqL 411 (574)
+...+..|+..+
T Consensus 347 ~~~~~~~le~~~ 358 (880)
T PRK02224 347 LREDADDLEERA 358 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333344333
No 50
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=87.90 E-value=60 Score=39.15 Aligned_cols=105 Identities=25% Similarity=0.278 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhHHHHHHHhhhchHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHH---------HHHHHHH
Q 008199 262 LTNMIEVKDKHLEEMKERFTETSNSVEKL-------MEEKDRLLQSYNEEIKK-------IQLS---------ARDHFQR 318 (574)
Q Consensus 262 L~n~i~~kn~~l~elE~k~~e~s~sL~~~-------meEk~~l~~~yneEi~k-------mQ~~---------a~~~~~r 318 (574)
-..+|+.|.+.+.+||.+....+--...+ .|.+.+||-...+++.+ +.+. +-+|.+.
T Consensus 920 sicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~ke 999 (1424)
T KOG4572|consen 920 SICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKE 999 (1424)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34567778888888877766554444333 24456666555444333 2222 2355566
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 008199 319 IFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNA 366 (574)
Q Consensus 319 I~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~ 366 (574)
.--++.-++++||+++++|+.--.+++++++.--++..+--.+-+=|+
T Consensus 1000 fE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka 1047 (1424)
T KOG4572|consen 1000 FEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKA 1047 (1424)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhh
Confidence 666777789999999999999999999998887666655333333333
No 51
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.48 E-value=99 Score=38.80 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=22.3
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 231 IGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVK 269 (574)
Q Consensus 231 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~k 269 (574)
+..-..+. +|.+-++-++...-+-+..|+.|.|.-..-
T Consensus 1497 vA~~vL~l-~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL 1534 (1758)
T KOG0994|consen 1497 VAEEVLAL-ELPLTPEQIQQLTGEIQERVASLPNVDAIL 1534 (1758)
T ss_pred HHHHHHhc-cCCCCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44444444 677777666666666666666666654433
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.14 E-value=96 Score=38.28 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhc
Q 008199 400 LHNRIIQLEKQLDAKQALALEIERLKGSLNVMKH 433 (574)
Q Consensus 400 ~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKh 433 (574)
+-.-+...|+-+.+++..+|+++.|.+-+.-|+.
T Consensus 887 i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~ 920 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGELERKKLEHEVTKLES 920 (1174)
T ss_pred HhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhh
Confidence 3333455677788899999999999987776654
No 53
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.68 E-value=44 Score=33.92 Aligned_cols=128 Identities=16% Similarity=0.363 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 243 TISEMMEEEARKQNLLVSNLTNMIEVK---DKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRI 319 (574)
Q Consensus 243 Ti~ei~~E~~rk~~~lv~~L~n~i~~k---n~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI 319 (574)
||+.++.+..+.....-..+...+..+ ..+|.-||..|+.......+ -...+..|...-..+...+.++..+|
T Consensus 52 ~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek----~K~vi~~~k~NEE~Lkk~~~ey~~~l 127 (207)
T PF05010_consen 52 TIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEK----QKEVIEGYKKNEETLKKCIEEYEERL 127 (207)
T ss_pred HHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 677777665554333333333333333 33444555555443333322 23344455444444455566666666
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHH
Q 008199 320 FTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQL 374 (574)
Q Consensus 320 ~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~l 374 (574)
-.+.++...=-..-...|+.=..+++........+-..|+...++..++..||.-
T Consensus 128 ~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 128 KKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555544444556677777778777777777777777777776666555554
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=85.19 E-value=1.9 Score=33.58 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=41.3
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-cccccc-CCCCCceeEEEeeCCChhhhHhHHH
Q 008199 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLW-NFRGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 124 gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~-~~~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
+.|-|+|. ..+..+|++.|+. |.+. .+.... ....+.|+++|.|.+ +..-..|+.
T Consensus 1 l~v~nlp~---------~~t~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPP---------DVTEEELRDFFSQ--FGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALE 57 (70)
T ss_dssp EEEESETT---------TSSHHHHHHHHHT--TSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred cEEcCCCC---------cCCHHHHHHHHHH--hhhcccccccccccccccceEEEEEcC-HHHHHHHHH
Confidence 35778886 5688999999999 8876 444455 345688999999987 666666665
No 55
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.12 E-value=71 Score=35.88 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHH---------
Q 008199 261 NLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYN--EEIKKIQLSARDHFQRIFTDHEKLKLQ--------- 329 (574)
Q Consensus 261 ~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yn--eEi~kmQ~~a~~~~~rI~~e~ekl~~e--------- 329 (574)
.+.-++..-.+.+++|+---+.+-.--.+++.|+-+|.+.|+ ||+++=|..-... +|. +-++...|
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE--~l~-Ee~rrhrEil~k~eRea 295 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEE--SLS-EEERRHREILIKKEREA 295 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHH-HHHHHHHHHHHHHHHHH
Confidence 355666677777888888777777777888889888888776 5555544432211 111 11222222
Q ss_pred ------HHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008199 330 ------LESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNR 403 (574)
Q Consensus 330 ------Le~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~k 403 (574)
|+.+.+-|+.-..+|..+.|....--.+|..+.++-...-..+.+-..+.|+-...+.--.-.+.++|++...=
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqEL 375 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQEL 375 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 23344445555555566666666666777777777666666666666666666666665666688899999998
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 008199 404 IIQLEKQLDAKQALALEIE 422 (574)
Q Consensus 404 i~~LekqL~~kQ~LELEi~ 422 (574)
|..|-++|.--|.+-+..+
T Consensus 376 ieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 376 IEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9888888876665544444
No 56
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.73 E-value=1.3e+02 Score=38.73 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=18.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhHHH
Q 008199 438 GDIEVLQKMETVLKDLREKEGELDDLEA 465 (574)
Q Consensus 438 ~d~~~~~k~~~l~~~L~ek~~el~~~e~ 465 (574)
.++++...++.....+.++...+.+++.
T Consensus 436 SdEeLe~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777776665543
No 57
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=84.69 E-value=1.2e+02 Score=38.14 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=13.1
Q ss_pred HHHhhhCCCc-eEeecCCeeecc
Q 008199 23 SYKKLKSGNH-SVKISDEAFTCP 44 (574)
Q Consensus 23 ~y~~Lk~g~~-kVk~~~~~~~CP 44 (574)
||++=--+|| ||.+....|.-|
T Consensus 281 FYadslveTY~KIm~hk~~l~FP 303 (1317)
T KOG0612|consen 281 FYADSLVETYGKIMNHKESLSFP 303 (1317)
T ss_pred chHHHHHHHHHHHhchhhhcCCC
Confidence 4444444555 666666666666
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.17 E-value=1.3e+02 Score=37.97 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=48.2
Q ss_pred cchhhhhccc-CCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHH
Q 008199 230 IIGDHLRKIG-DLKTISEMMEEEAR----KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKL 290 (574)
Q Consensus 230 ~iG~~LrK~g-dLKTi~ei~~E~~r----k~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~ 290 (574)
.|++||-..+ |.-||.++.++-.. -+-.+|.+|+++|..--..|..++..++.|---++|+
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH
Confidence 4788887665 77777777666553 4578899999999999999999999999887666654
No 59
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.78 E-value=66 Score=34.40 Aligned_cols=94 Identities=24% Similarity=0.338 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhh---hhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhh----------hHH
Q 008199 398 EDLHNRIIQLEKQLDAKQALALEIERLK---GSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELD----------DLE 464 (574)
Q Consensus 398 e~~~~ki~~LekqL~~kQ~LELEi~qLk---g~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~----------~~e 464 (574)
..+..+|-+|+++|...++-.-.-.+++ ....-.+- .-.++..+|.+|..+.++.-.+|- .--
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~----~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKK----KAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999988775444333333 33332222 234666777777777666555442 111
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHhc
Q 008199 465 ALNQTLIIRERKSNDELQDARKELINALKEL 495 (574)
Q Consensus 465 ~lnq~Li~ker~sNdELqeARk~LI~~l~~~ 495 (574)
+.-+.-+++-+..-|++-++...+-+-|.++
T Consensus 210 de~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 210 DELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2223445566666777777777777777665
No 60
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.70 E-value=1.2e+02 Score=37.39 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=47.6
Q ss_pred CcchhhhhcccCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHH
Q 008199 229 NIIGDHLRKIGDLKTISEMMEEEARKQN-LLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLL 298 (574)
Q Consensus 229 ~~iG~~LrK~gdLKTi~ei~~E~~rk~~-~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~ 298 (574)
+-|++| ..|.+|+=++..+.--.. .|+.++. .+.......+.||..|+..+..|.++-.+.+++-
T Consensus 150 DkV~EF----a~L~pi~LL~eTekAig~~~ll~~h~-eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~ 215 (1072)
T KOG0979|consen 150 DKVKEF----ARLSPIELLVETEKAIGAEELLQYHI-ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLE 215 (1072)
T ss_pred HHHHHH----HcCChHHHHHHHHHhcCchhhHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 347777 578888888876665333 3555554 5777888899999999999999998876665554
No 61
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.59 E-value=26 Score=35.07 Aligned_cols=87 Identities=22% Similarity=0.331 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008199 254 KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQ 333 (574)
Q Consensus 254 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k 333 (574)
++...+.+++..+....+.+..|+..+......+.++-.||+.|...|+.=|...||.+--- |-=|..-|.+.
T Consensus 83 kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~k-------n~lLEkKl~~l 155 (201)
T PF13851_consen 83 KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLK-------NLLLEKKLQAL 155 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 56677888999999999999999999999999999999999999999998888777766432 33344455555
Q ss_pred HHHHHHHHHHHHHH
Q 008199 334 KKELELRGEELEKR 347 (574)
Q Consensus 334 ~~eL~~r~k~L~k~ 347 (574)
...|+.+..||...
T Consensus 156 ~~~lE~keaqL~ev 169 (201)
T PF13851_consen 156 SEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666543
No 62
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.38 E-value=1.1e+02 Score=36.77 Aligned_cols=94 Identities=21% Similarity=0.307 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008199 253 RKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLES 332 (574)
Q Consensus 253 rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~ 332 (574)
.|...=|..|+.+++.--..--.+|.+..-.---|..-|. +|..+-.|.-++|| +-+-++-.+.++.+.+||.
T Consensus 20 ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~---qlr~~ree~eq~i~----~~~~~~s~e~e~~~~~le~ 92 (769)
T PF05911_consen 20 EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMR---QLRQVREEQEQKIH----EAVAKKSKEWEKIKSELEA 92 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHH---HHHHhhHHHHHHHH----HHHHHHhHHHHHHHHHHHH
Confidence 5788888999999998888877888888777777777773 44444444444444 4445667789999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHH
Q 008199 333 QKKELELRGEELEKRETQNENDRK 356 (574)
Q Consensus 333 k~~eL~~r~k~L~k~~~~~~~er~ 356 (574)
+.-++.. +|.+..+.|..=.+
T Consensus 93 ~l~e~~~---~l~~~~~e~~~l~~ 113 (769)
T PF05911_consen 93 KLAELSK---RLAESAAENSALSK 113 (769)
T ss_pred HHHHHHH---HHHHHHhhhHHHHH
Confidence 8888754 67777777664333
No 63
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.96 E-value=1.1e+02 Score=36.30 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=39.1
Q ss_pred CCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH-HHHHHHHHHHHHHHH
Q 008199 240 DLKTISEMMEE-----EARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM-EEKDRLLQSYNEEIK 306 (574)
Q Consensus 240 dLKTi~ei~~E-----~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~m-eEk~~l~~~yneEi~ 306 (574)
-+||.+=|... +......+++-++..-..-.++|..||++|...-.-++-.| .|-+.+...|..|+.
T Consensus 465 TiRtaslvtrq~~Eheqe~~l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~e 537 (948)
T KOG0577|consen 465 TIRTASLVTRQIQEHEQESELREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDRELETLRANFSAELE 537 (948)
T ss_pred HHhHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 45665544422 22355667788888888899999999999965533332222 122344444444433
No 64
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=82.81 E-value=1.5e+02 Score=37.69 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 008199 354 DRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVM 431 (574)
Q Consensus 354 er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vm 431 (574)
+++++..+..+-...-..+++...++.+.--+...|-.. +.....+++.+|...|.||-+|..|...+.-.
T Consensus 827 Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e-------~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~ 897 (1294)
T KOG0962|consen 827 EKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNE-------LKEEKQKIERSLARLQQLEEDIEELSEEITRL 897 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444444555666677777766555554444333 34555667778888888888888887765544
No 65
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.50 E-value=96 Score=35.36 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008199 254 KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQ 333 (574)
Q Consensus 254 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k 333 (574)
...+.|..|...|...+.-+.-......+.......++.+++.....|..++..-+..-..--..+ .-...|...|..-
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a 247 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEA 247 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 445667777777777777777666666666555556666777777777776654433333333322 3344455555555
Q ss_pred HHHHHHHHHHHHHHhh
Q 008199 334 KKELELRGEELEKRET 349 (574)
Q Consensus 334 ~~eL~~r~k~L~k~~~ 349 (574)
..++..-..+|.....
T Consensus 248 ~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 248 SAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566555555554443
No 66
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=82.48 E-value=1.1e+02 Score=36.24 Aligned_cols=101 Identities=24% Similarity=0.318 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 329 QLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLE 408 (574)
Q Consensus 329 eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~Le 408 (574)
.|-+.-+.+..+...|++.....-....++..+.. .+..+....++.--++.+.+++-+-+.+..++++-+++
T Consensus 514 ~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~-------~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~ 586 (698)
T KOG0978|consen 514 TLKASVDKLELKIGKLEEQERGLTSNESKLIKELT-------TLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQ 586 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666555555555554444 34566666777777888888888999999999998888
Q ss_pred HHHhHH-----------HHHHHHHHHhhhhhhhhhccCC
Q 008199 409 KQLDAK-----------QALALEIERLKGSLNVMKHMGD 436 (574)
Q Consensus 409 kqL~~k-----------Q~LELEi~qLkg~L~VmKhm~~ 436 (574)
.++.+. +.||-|+.+|+++|.-++-+..
T Consensus 587 ~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 587 EQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 887643 5688888889999988887655
No 67
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.53 E-value=1e+02 Score=35.09 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008199 394 KKQKEDLHNRIIQLEKQLDAKQALALE 420 (574)
Q Consensus 394 krEke~~~~ki~~LekqL~~kQ~LELE 420 (574)
+.+.+.+..++..|..++...+.|+-.
T Consensus 217 ~~~leeae~~l~~L~~e~~~~k~Le~k 243 (522)
T PF05701_consen 217 EKELEEAEEELEELKEELEAAKDLESK 243 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888887777653
No 68
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.29 E-value=67 Score=36.69 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHh
Q 008199 483 DARKELINALKE 494 (574)
Q Consensus 483 eARk~LI~~l~~ 494 (574)
.||+-|+..+..
T Consensus 183 ~a~~i~~~aiqr 194 (514)
T TIGR03319 183 KAKEILATAIQR 194 (514)
T ss_pred HHHHHHHHHHHh
Confidence 456666666543
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=81.15 E-value=3 Score=33.09 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=41.9
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCC-CcccccccCCCC-CceeEEEeeCCChhhhHhHHHHHH
Q 008199 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFN-PTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSFEK 193 (574)
Q Consensus 124 gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~-p~kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~fe~ 193 (574)
+.|-|+|. +.+...|.+.|+. |. +.++....++.| .+|+|.|.|. +-.....|+.+.+
T Consensus 1 v~i~nlp~---------~~~~~~l~~~f~~--~g~v~~v~~~~~~~~~~~~~a~v~f~-~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPP---------STTEEDLRNFFSR--FGPVEKVRLIKNKDGQSRGFAFVEFS-SEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTT---------T--HHHHHHHCTT--SSBEEEEEEEESTTSSEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred CEEeCCCC---------CCCHHHHHHHHHh--cCCcceEEEEeeeccccCCEEEEEeC-CHHHHHHHHHHCC
Confidence 45788886 5577899999988 54 467777777654 4799999996 6667777777654
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=80.43 E-value=1.7e+02 Score=36.82 Aligned_cols=10 Identities=60% Similarity=0.963 Sum_probs=6.2
Q ss_pred HHHHHHHHHh
Q 008199 532 SELCSLWEEY 541 (574)
Q Consensus 532 ~~lcS~Wq~~ 541 (574)
+.+.-.|+..
T Consensus 935 ~~~~~~~~~~ 944 (1201)
T PF12128_consen 935 SELAENWEEL 944 (1201)
T ss_pred cchHHHHHHH
Confidence 3456667776
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.03 E-value=1.5e+02 Score=35.91 Aligned_cols=27 Identities=33% Similarity=0.262 Sum_probs=16.1
Q ss_pred HHHHHHHhhcChh-----hHHHHHHHHHHHHH
Q 008199 513 PFLEVMNRKYNEE-----EAEERASELCSLWE 539 (574)
Q Consensus 513 pF~~ack~k~~~~-----~~~~~a~~lcS~Wq 539 (574)
.-+.||..-|..+ +++.++.+|.-.-+
T Consensus 581 ~q~lake~~yk~e~d~~ke~et~~lel~~~ke 612 (1118)
T KOG1029|consen 581 SQQLAKEELYKNERDKLKEAETKALELIGEKE 612 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456776666532 66677777765433
No 72
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=79.38 E-value=74 Score=37.62 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhhhcc
Q 008199 409 KQLDAKQALALEIERLKGSLNVMKHM 434 (574)
Q Consensus 409 kqL~~kQ~LELEi~qLkg~L~VmKhm 434 (574)
++..+..+|=-+|++|||...|-...
T Consensus 297 ~e~~~r~kL~N~i~eLkGnIRV~CRv 322 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELKGNIRVFCRV 322 (670)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEe
Confidence 34455668888999999999997763
No 73
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.32 E-value=1.3e+02 Score=34.85 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 008199 284 SNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIE 363 (574)
Q Consensus 284 s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~ 363 (574)
..+.+-++++-.-+.+.|..||+..+..++...- -+..+-.+.+|...+++|-+.-. .....|..|-......+=
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~~F~~eL~~Ai~eiRaqye---~~~~~nR~diE~~Y~~kI 277 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNREYFKNELALAIREIRAQYE---AISRQNRKDIESWYKRKI 277 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHH
Confidence 4455566777788888888998888877765542 23344456677777776655322 223333333332222111
Q ss_pred HHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHH
Q 008199 364 KNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVL 443 (574)
Q Consensus 364 kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~ 443 (574)
.+ -+.+-..+..++..+.|+|+++-. .--.+..++-+||.. -+.|+-.|+.|+-+|.=-.-+-...=.+--
T Consensus 278 ~~--i~~~~~~~~~~~~~~rEEl~~~R~----~i~~Lr~klselE~~---n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd 348 (546)
T KOG0977|consen 278 QE--IRTSAERANVEQNYAREELRRIRS----RISGLRAKLSELESR---NSALEKRIEDLEYQLDEDQRSFEQALNDKD 348 (546)
T ss_pred HH--HHhhhccccchhHHHHHHHHHHHh----cccchhhhhcccccc---ChhHHHHHHHHHhhhhhhhhhhhhhhhhHH
Confidence 11 122334566777778887776633 234456666666654 356788888888766532222111000101
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 008199 444 QKMETVLKDLREKEGELDDLEALNQTLI 471 (574)
Q Consensus 444 ~k~~~l~~~L~ek~~el~~~e~lnq~Li 471 (574)
..|.+|.++-.....||+.|=+..++|-
T Consensus 349 ~~i~~mReec~~l~~Elq~LlD~ki~Ld 376 (546)
T KOG0977|consen 349 AEIAKMREECQQLSVELQKLLDTKISLD 376 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHhHHH
Confidence 2244444444444444444444444443
No 74
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.40 E-value=1.7e+02 Score=35.11 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=58.4
Q ss_pred eeccCCCCCC-Ccch-hhhhcccCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH
Q 008199 219 VARSDDYNLK-NIIG-DHLRKIGDLKTISEMMEEEA---RKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE 293 (574)
Q Consensus 219 vAradD~~~~-~~iG-~~LrK~gdLKTi~ei~~E~~---rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meE 293 (574)
+|+..|.+-. ..+| .|+-..+.=-|+.+++.+-. ...+..|--+-++...-+..|...|.++..+ .. .....+
T Consensus 62 ~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs-~r-ae~lpe 139 (916)
T KOG0249|consen 62 MAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQS-LR-AETLPE 139 (916)
T ss_pred HhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhH-Hh-hhhhhh
Confidence 4555666432 2222 34444555556665543222 1222223233334444455555555555333 22 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008199 294 KDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELEL 339 (574)
Q Consensus 294 k~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~ 339 (574)
-+.-++.-+++.. +|++|...|..-.+||..+++..-.||..
T Consensus 140 veael~qr~~al~----~aee~~~~~eer~~kl~~~~qe~naeL~r 181 (916)
T KOG0249|consen 140 VEAELAQRNAALT----KAEEHSGNIEERTRKLEEQLEELNAELQR 181 (916)
T ss_pred hHHHHHHHHHHHH----HHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444443 46778888888888888888877777654
No 75
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.36 E-value=1.1e+02 Score=32.87 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhccC
Q 008199 413 AKQALALEIERLKGSLNVMKHMG 435 (574)
Q Consensus 413 ~kQ~LELEi~qLkg~L~VmKhm~ 435 (574)
.++++.-+|+.+...++--++..
T Consensus 247 ~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 247 KKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666666666555555543
No 76
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=76.81 E-value=57 Score=39.08 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 382 ADENVRKLAEDQKKQKEDLHNRIIQL 407 (574)
Q Consensus 382 ade~vlkLve~hkrEke~~~~ki~~L 407 (574)
+.+.+-.++++-++|-+.+++++-++
T Consensus 571 ~~~~a~~~l~~a~~~~~~~i~~lk~~ 596 (782)
T PRK00409 571 AEKEAQQAIKEAKKEADEIIKELRQL 596 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334455555555666666555443
No 77
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=76.57 E-value=92 Score=31.65 Aligned_cols=84 Identities=18% Similarity=0.355 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhh---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008199 255 QNLLVSNLTNMIEVKDKHLEEMKERFTE---TSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLE 331 (574)
Q Consensus 255 ~~~lv~~L~n~i~~kn~~l~elE~k~~e---~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe 331 (574)
.+..+..+.+.+..+.....++-.+|.+ ....+..+|++-++.+...-+|-.+-...+...+++|+.+...+..+|.
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~ 86 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLN 86 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHH
Confidence 3444555555544444444455444443 3567778888888888777777777777778888899999988888887
Q ss_pred HHHHHHH
Q 008199 332 SQKKELE 338 (574)
Q Consensus 332 ~k~~eL~ 338 (574)
|.-+..-
T Consensus 87 s~E~sfs 93 (207)
T PF05010_consen 87 SLEKSFS 93 (207)
T ss_pred HHHhhHH
Confidence 7655444
No 78
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.08 E-value=94 Score=31.53 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 008199 391 EDQKKQKEDLHNRIIQLEKQLDAKQ 415 (574)
Q Consensus 391 e~hkrEke~~~~ki~~LekqL~~kQ 415 (574)
++...+......++..++.++..++
T Consensus 122 ~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 122 EELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433
No 79
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.90 E-value=1.9e+02 Score=35.06 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=32.4
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 008199 230 IIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKE 278 (574)
Q Consensus 230 ~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~ 278 (574)
.|-+.+..+++.--...++.+.-.+-+.++..|++.|....-.++.+..
T Consensus 630 ~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ 678 (970)
T KOG0946|consen 630 LIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQ 678 (970)
T ss_pred HHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3556666677776677777776677777777777777666555555543
No 80
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.71 E-value=2.1e+02 Score=35.30 Aligned_cols=186 Identities=21% Similarity=0.263 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHH
Q 008199 295 DRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQL 374 (574)
Q Consensus 295 ~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~l 374 (574)
=+.++.||.-++.---+-|+-+-.-=.+++|+..+||-+..|++.-...-+.+..+.+.--.++..-+++-+
T Consensus 370 fkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD-------- 441 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD-------- 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 345667777766666666777766677888899988888887765554444444433332222222222211
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHH----H
Q 008199 375 ASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETV----L 450 (574)
Q Consensus 375 A~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l----~ 450 (574)
|++- |.+-|--|+++ +-++..||.+||.....=.+||-=-+||.. -.| +-.-++.+.||-+ +
T Consensus 442 AAlG---AE~MV~qLtdk----nlnlEekVklLeetv~dlEalee~~EQL~E----sn~---ele~DLreEld~~~g~~k 507 (1243)
T KOG0971|consen 442 AALG---AEEMVEQLTDK----NLNLEEKVKLLEETVGDLEALEEMNEQLQE----SNR---ELELDLREELDMAKGARK 507 (1243)
T ss_pred Hhhc---HHHHHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHhhHHH
Confidence 1111 22233333332 334556666666655554444433333322 111 0011223333332 3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH-HH--hhcchHHHHHHHHHHHHHHhccCCccccee
Q 008199 451 KDLREKEGELDDLEALNQTLII-RE--RKSNDELQDARKELINALKELSGRAHIGLK 504 (574)
Q Consensus 451 ~~L~ek~~el~~~e~lnq~Li~-ke--r~sNdELqeARk~LI~~l~~~~~~~~IgiK 504 (574)
+=...+.+.++..=++.||++. +| +.-||.||+-+..-...-.+ ...+|||+
T Consensus 508 el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseee--s~q~~s~~ 562 (1243)
T KOG0971|consen 508 ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEE--SQQPPSVD 562 (1243)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--hcCCCCCc
Confidence 3445667777777788888764 33 34577777777644333222 35568887
No 81
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.55 E-value=1.6e+02 Score=33.88 Aligned_cols=84 Identities=25% Similarity=0.206 Sum_probs=43.0
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhccCCCC----chHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHH
Q 008199 410 QLDAKQALALEIERLKGSLNVMKHMGDDG----DIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDAR 485 (574)
Q Consensus 410 qL~~kQ~LELEi~qLkg~L~VmKhm~~~~----d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeAR 485 (574)
-++.-..+.-+|++|...|+- .-+.-+. -.++...++.|.++..+-.+....++.+-|- --+=|.+++++..+-
T Consensus 446 y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-~nRfr~~~~~V~~~f 523 (569)
T PRK04778 446 YLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-ANRYRSDNEEVAEAL 523 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCHHHHHHH
Confidence 345555666677777766654 2211110 1122233444444444444444444444443 334556788888877
Q ss_pred HHHHHHHHhc
Q 008199 486 KELINALKEL 495 (574)
Q Consensus 486 k~LI~~l~~~ 495 (574)
++.-.-|+++
T Consensus 524 ~~Ae~lF~~~ 533 (569)
T PRK04778 524 NEAERLFREY 533 (569)
T ss_pred HHHHHHHHhC
Confidence 7776666544
No 82
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.43 E-value=1.1e+02 Score=31.89 Aligned_cols=72 Identities=29% Similarity=0.379 Sum_probs=39.2
Q ss_pred hhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhhh
Q 008199 348 ETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQL-DAKQALALEIERLKG 426 (574)
Q Consensus 348 ~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL-~~kQ~LELEi~qLkg 426 (574)
.+.+..+...|..|+..-..+..+| +- .=.+++...+.-..+.+.+..+|..+|+.+ +.++.++.++..+..
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~l-----e~--el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSL-----ED--ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666655433222222 22 112344444555556666777777777776 356667777766654
No 83
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.38 E-value=1.1e+02 Score=31.83 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 008199 394 KKQKEDLHNRIIQLEKQLDA----KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDD 462 (574)
Q Consensus 394 krEke~~~~ki~~LekqL~~----kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~ 462 (574)
+.|--.+...|..|+.+|+. +..||-.|..|...+.... ......|..+..+|.+-..+|..
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~-------~~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER-------EEYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH-------HHHHHhhhccchhHHHHHHHHHH
Confidence 34444555555555555443 3445555555554444322 22233444444444444444433
No 84
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=75.33 E-value=99 Score=31.41 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH
Q 008199 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM 291 (574)
Q Consensus 256 ~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~m 291 (574)
..-|+.|...|.--...|...+.++..++.+|..+-
T Consensus 35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554443
No 85
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=74.87 E-value=1e+02 Score=31.26 Aligned_cols=133 Identities=21% Similarity=0.377 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008199 251 EARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQL 330 (574)
Q Consensus 251 ~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eL 330 (574)
..-..++.+..|...|...+++.+..|..|......|+ +.|..|++.++... +..-+.+.-...|+. +
T Consensus 13 ~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR----------~ElI~ELkqsKkly-dnYYkL~~KY~~LK~-~ 80 (196)
T PF15272_consen 13 QLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLR----------QELINELKQSKKLY-DNYYKLYSKYQELKK-S 80 (196)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHH----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-H
Confidence 44567888999999999999999999888877766655 46666666665543 334445555555555 3
Q ss_pred HHHHHHHHHHHHHHHH----HhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 331 ESQKKELELRGEELEK----RETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQ 406 (574)
Q Consensus 331 e~k~~eL~~r~k~L~k----~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~ 406 (574)
-.+...|..++..|++ +.+..+.....+.++.-. ++ -....|...+++++-+...+|.+
T Consensus 81 ~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~---------~~--------~r~~el~~~r~~e~~~YesRI~d 143 (196)
T PF15272_consen 81 SKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLS---------LE--------LRNKELQNERERERIAYESRIAD 143 (196)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HH--------HHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333332 223333333333322211 11 11224666677777788888888
Q ss_pred HHHHHh
Q 008199 407 LEKQLD 412 (574)
Q Consensus 407 LekqL~ 412 (574)
||.||.
T Consensus 144 LE~~L~ 149 (196)
T PF15272_consen 144 LERQLN 149 (196)
T ss_pred HHHHHH
Confidence 888876
No 86
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.81 E-value=1.1e+02 Score=31.68 Aligned_cols=179 Identities=27% Similarity=0.357 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhhchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHH
Q 008199 262 LTNMIEVKDKHLEEMKERFTETSNSVEKLM--EEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHE-KLKLQLESQKKELE 338 (574)
Q Consensus 262 L~n~i~~kn~~l~elE~k~~e~s~sL~~~m--eEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~e-kl~~eLe~k~~eL~ 338 (574)
|-..|+..-+.+.+-=..|+.+..++...- .+|+++-.--..||+|+|+ .|+.+.--+..++ |=+..|..-++-++
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR-~RdQIK~W~~~~diKdk~~L~e~Rk~IE 84 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQR-LRDQIKTWLSSNDIKDKKKLLENRKLIE 84 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHH-HHHHHHHHccCcccccHHHHHHHHHHHH
Confidence 344566666666666666666666666533 4589999999999999995 5777766665443 12233555555555
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008199 339 LRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASL--VQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA 416 (574)
Q Consensus 339 ~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~--Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~ 416 (574)
.+.. .++-++.+.+-++--+..|..|+. .+.++..++... +-.-|-+|..|.+ .
T Consensus 85 ~~ME-----------rFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~w----------l~~~Id~L~~QiE---~ 140 (233)
T PF04065_consen 85 EQME-----------RFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDW----------LKDSIDELNRQIE---Q 140 (233)
T ss_pred HHHH-----------HHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHH----------HHHHHHHHHHHHH---H
Confidence 5444 344455555555555666665551 122222222222 3456778888876 6
Q ss_pred HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 008199 417 LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTL 470 (574)
Q Consensus 417 LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~L 470 (574)
+|.|++.|.++..=-| .++..-.++++|..-++--..-+..||.+-..|
T Consensus 141 ~E~E~E~L~~~~kKkk-----~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L 189 (233)
T PF04065_consen 141 LEAEIESLSSQKKKKK-----KDSTKQERIEELESRIERHKFHIEKLELLLRLL 189 (233)
T ss_pred HHHHHHHHHHhhccCc-----cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899998876432111 223344556666655555555555444444333
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=74.26 E-value=6.8 Score=29.50 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=34.0
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCC
Q 008199 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 124 gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
++|-|+|. +.+..+|++.|.. |.+. .+....++..++|++.|.|...
T Consensus 2 v~i~~l~~---------~~~~~~l~~~~~~--~g~v~~~~~~~~~~~~~~~~~v~f~~~ 49 (72)
T smart00362 2 LFVGNLPP---------DVTEEDLKELFSK--FGPIESVKIPKDTGKSKGFAFVEFESE 49 (72)
T ss_pred EEEcCCCC---------cCCHHHHHHHHHh--cCCEEEEEEecCCCCCCceEEEEeCCH
Confidence 56778875 4567889999998 7654 4444445556789999999864
No 88
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=73.77 E-value=1.9e+02 Score=33.98 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 008199 249 EEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTE 282 (574)
Q Consensus 249 ~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e 282 (574)
++..+.....|..|++....-..++++||.+..+
T Consensus 28 qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 28 QQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666666544
No 89
>PHA02540 61 DNA primase; Provisional
Probab=73.76 E-value=0.86 Score=49.02 Aligned_cols=124 Identities=14% Similarity=0.226 Sum_probs=64.0
Q ss_pred eeeccCCCCCCcc----ccChHH----HHhhhhcCCCCCCcccchHHHHhHHHHHHHHHHhcccCCCCCCCCCCCCCCCC
Q 008199 40 AFTCPYCPKKRKQ----EYLYKD----LLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTG 111 (574)
Q Consensus 40 ~~~CP~C~gkkk~----~y~~~~----LLqHA~gvg~~ss~R~a~k~ka~H~aLak~L~~dl~~~~~~~~~~~~~~~~~~ 111 (574)
.++||||..+.++ ..++.+ ++=|-.|-|.++.-=.- --...|+.+-.||+......+...+.+ ...+ .+
T Consensus 27 ~~~CPf~~ds~~~~~kpsF~V~p~k~~~~yhCFgCGa~Gd~i~F-lme~e~lsf~Eav~~la~~~g~~~~~~-~~~~-~~ 103 (337)
T PHA02540 27 NFRCPICGDSQKDKNKARGWIYEKKDGGVFKCHNCGYHRPFGNF-LKDYEPDLYREYIMERFKERGTGKGRP-VPKP-KF 103 (337)
T ss_pred EecCCCCCCccccCcCCcEEEeccCCceEEEecCCCCCCCHHHH-HHHhcCCChHHHHHHHHHHhCCccccC-CCCC-Ch
Confidence 5899999975432 333333 34488887733321111 123456666777777666555322221 0011 01
Q ss_pred CC-CCc--eeeecceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhH
Q 008199 112 CS-HDE--KFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNA 188 (574)
Q Consensus 112 ~~-~de--~iVWPwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA 188 (574)
.. ... .=.|+++-.+.+++ .+...+++|..+|+.+..+..+ -|..+|.++.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~l~------------~~~~a~~YL~~RGi~~~~~~~~------------~~~~~~~~l~~~ 159 (337)
T PHA02540 104 EFKKEKKVIEKLPFCERLDTLP------------EDHPIIKYVENRCIPKDKWKLL------------YFTREWQKLVNS 159 (337)
T ss_pred hHHHHHHHHHHHHHHHHHHhCc------------ccHHHHHHHHHcCCCHHHHHhc------------CCCccHHHHHHH
Confidence 00 000 11134433333332 3445689999999988865432 256788887775
Q ss_pred HH
Q 008199 189 MS 190 (574)
Q Consensus 189 ~~ 190 (574)
+.
T Consensus 160 l~ 161 (337)
T PHA02540 160 IK 161 (337)
T ss_pred Hh
Confidence 53
No 90
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.68 E-value=36 Score=38.28 Aligned_cols=22 Identities=27% Similarity=0.139 Sum_probs=13.9
Q ss_pred ccCCCCCCCcchhhhhcccCCC
Q 008199 221 RSDDYNLKNIIGDHLRKIGDLK 242 (574)
Q Consensus 221 radD~~~~~~iG~~LrK~gdLK 242 (574)
|-+||-+.+.|-+...+..|=|
T Consensus 278 rVWDYAGDnYVhRl~~~~~dGk 299 (493)
T KOG0804|consen 278 RVWDYAGDNYVHRLPQSKTDGK 299 (493)
T ss_pred eeeecccchhhhhccccCCCCc
Confidence 5677777766666666554444
No 91
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.55 E-value=1.5e+02 Score=31.40 Aligned_cols=39 Identities=31% Similarity=0.346 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 008199 388 KLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKG 426 (574)
Q Consensus 388 kLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg 426 (574)
.++++-..---.+..++.-||-+||+||-|=-++|+||.
T Consensus 133 ~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkd 171 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKD 171 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555555566777888899999999999989998885
No 92
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=69.71 E-value=1.6e+02 Score=35.63 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=6.0
Q ss_pred cceeeeeccC
Q 008199 214 GLYAWVARSD 223 (574)
Q Consensus 214 ~LYGwvArad 223 (574)
..-||++|.-
T Consensus 822 ~~Rg~L~rkr 831 (1259)
T KOG0163|consen 822 IARGYLARKR 831 (1259)
T ss_pred HHHHHHHHhh
Confidence 4457777654
No 93
>PRK12704 phosphodiesterase; Provisional
Probab=69.30 E-value=2.2e+02 Score=32.73 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=7.6
Q ss_pred hcCCCCCccEEE
Q 008199 542 LKDPDWHPFKVI 553 (574)
Q Consensus 542 l~dp~WhPFkvv 553 (574)
+.|--=|||++-
T Consensus 274 ~~dg~i~P~~ie 285 (520)
T PRK12704 274 VQDGRIHPARIE 285 (520)
T ss_pred HhcCCcCCCCHH
Confidence 456667777653
No 94
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.03 E-value=3e+02 Score=34.37 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=70.3
Q ss_pred ceeeeeccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH---
Q 008199 215 LYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM--- 291 (574)
Q Consensus 215 LYGwvAradD~~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~m--- 291 (574)
|=|=+-..--+=+.|+.| ++ .|=+-+..+. .+.++|..-|.+... ....+..++.+.+-..+.|..++
T Consensus 629 ldGtl~~ksGlmsGG~s~---~~-wdek~~~~L~----~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~ 699 (1141)
T KOG0018|consen 629 LDGTLIHKSGLMSGGSSG---AK-WDEKEVDQLK----EKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDL 699 (1141)
T ss_pred eeeeEEeccceecCCccC---CC-cCHHHHHHHH----HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455667777 33 4544444443 244455555555444 33366666666666655555554
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008199 292 -------EEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELR 340 (574)
Q Consensus 292 -------eEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r 340 (574)
+++++-++.++.+|...+-... .+.|.++..+.-..+|+.+|++++.+
T Consensus 700 ~~~k~~l~~~~~El~~~~~~i~~~~p~i~-~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 700 EQLKRSLEQNELELQRTESEIDEFGPEIS-EIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777776666666 77778888887778888888777765
No 95
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=68.64 E-value=1.1e+02 Score=36.63 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=16.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 008199 317 QRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKIL 358 (574)
Q Consensus 317 ~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl 358 (574)
.+++.+-+..+.+++.++.+++....++++....-+.+...|
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444333333333333333
No 96
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=68.27 E-value=2.3e+02 Score=32.62 Aligned_cols=104 Identities=23% Similarity=0.380 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHhhhhhh-hhhccCC--CCchHHHHHHHHHHHHHHH
Q 008199 386 VRKLAEDQKKQKEDLHNRIIQLEKQ-------LDAKQALALEIERLKGSLN-VMKHMGD--DGDIEVLQKMETVLKDLRE 455 (574)
Q Consensus 386 vlkLve~hkrEke~~~~ki~~Lekq-------L~~kQ~LELEi~qLkg~L~-VmKhm~~--~~d~~~~~k~~~l~~~L~e 455 (574)
+...+..-+.+...+...|..|.+. +..-+.++-+++.|...+. +...+.. ..-+++...++++.++|.+
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3344444455666666666666554 5667788888888888877 4444443 2357778889999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 008199 456 KEGELDDLEALNQTLIIRERKSNDELQDARKELI 489 (574)
Q Consensus 456 k~~el~~~e~lnq~Li~ker~sNdELqeARk~LI 489 (574)
-..+...+...-+.|-..|..+.+.|+..++.|-
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888999999888888888888653
No 97
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.60 E-value=2.2e+02 Score=32.30 Aligned_cols=20 Identities=40% Similarity=0.295 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008199 328 LQLESQKKELELRGEELEKR 347 (574)
Q Consensus 328 ~eLe~k~~eL~~r~k~L~k~ 347 (574)
.||++++..++.+..+.+.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l 366 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSL 366 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhh
Confidence 57777777777776666553
No 98
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=67.53 E-value=3.8 Score=25.71 Aligned_cols=20 Identities=40% Similarity=0.688 Sum_probs=13.4
Q ss_pred eeccCCCCCCccccChHHHHhhh
Q 008199 41 FTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 41 ~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
|.||+|+.. +....+|.+|-
T Consensus 1 ~~C~~C~~~---~~~~~~l~~H~ 20 (24)
T PF13894_consen 1 FQCPICGKS---FRSKSELRQHM 20 (24)
T ss_dssp EE-SSTS-E---ESSHHHHHHHH
T ss_pred CCCcCCCCc---CCcHHHHHHHH
Confidence 789999744 55677777774
No 99
>PRK00106 hypothetical protein; Provisional
Probab=65.92 E-value=2.6e+02 Score=32.39 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=27.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHhhh
Q 008199 374 LASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA----LALEIERLKG 426 (574)
Q Consensus 374 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~----LELEi~qLkg 426 (574)
.|.+-+..|-+.+++-+++.-+.--..+-+-.+-|-+..+.++ +-.-||+.-+
T Consensus 162 ~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii~~aiqr~a~ 218 (535)
T PRK00106 162 VAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAG 218 (535)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555577777777776544332222222233333344444 6666776654
No 100
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.53 E-value=1.6e+02 Score=35.36 Aligned_cols=71 Identities=25% Similarity=0.333 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008199 249 EEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDH 323 (574)
Q Consensus 249 ~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ 323 (574)
.++....+.++..|..+...-.+...+++....+.....+++.++.+.+ .++-+++.+.|++.+++++.+-
T Consensus 512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l----~~~~~~~~~~~~~~a~~~l~~a 582 (782)
T PRK00409 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL----QEEEDKLLEEAEKEAQQAIKEA 582 (782)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666555555555555444444443333333333333 3333444444444444444443
No 101
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=65.35 E-value=2.5e+02 Score=32.11 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=27.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHhhhh
Q 008199 374 LASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA----LALEIERLKGS 427 (574)
Q Consensus 374 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~----LELEi~qLkg~ 427 (574)
.|.+-+..|-+.+++-+++.-+.--...-+-++-+.+..+..+ |-.-||++-+-
T Consensus 141 ~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~aiqr~a~~ 198 (514)
T TIGR03319 141 ISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYAGD 198 (514)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4555555577777777776644322222222222333333333 66677776643
No 102
>PRK12704 phosphodiesterase; Provisional
Probab=64.88 E-value=2.6e+02 Score=32.07 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=27.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHhhh
Q 008199 374 LASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA----LALEIERLKG 426 (574)
Q Consensus 374 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~----LELEi~qLkg 426 (574)
.|.+-+..|-+.+++-+++.-+.--..+-+-++-+.+..+.++ |-.-||+.-+
T Consensus 147 ~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~qr~a~ 203 (520)
T PRK12704 147 ISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAA 203 (520)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555556677777777776644322222222233333333333 6666776654
No 103
>PRK09039 hypothetical protein; Validated
Probab=64.19 E-value=2.2e+02 Score=30.87 Aligned_cols=49 Identities=12% Similarity=0.285 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 008199 254 KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYN 302 (574)
Q Consensus 254 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yn 302 (574)
..+..++.|...+...+.....++.........|+-+..++..|...|.
T Consensus 57 ~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 57 RLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444567788888888888888988888888888877777777777776
No 104
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=64.02 E-value=2.8e+02 Score=32.23 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=23.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHhhhcHHHHHHHHHHH
Q 008199 315 HFQRIFTDHEKLKLQLESQKKELELRGEEL--EKRETQNENDRKILAEEI 362 (574)
Q Consensus 315 ~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L--~k~~~~~~~er~kl~~e~ 362 (574)
+++.|..+++ +.+.....+++..+.+.= .++.++-+..|++...++
T Consensus 198 el~~i~~~~q--~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~ 245 (591)
T KOG2412|consen 198 ELQAIQREKQ--RKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEA 245 (591)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888887 344444444444433322 233344444455544333
No 105
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=63.46 E-value=12 Score=36.79 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 008199 399 DLHNRIIQLEKQLDAKQALALEIERLKG 426 (574)
Q Consensus 399 ~~~~ki~~LekqL~~kQ~LELEi~qLkg 426 (574)
.+..+..-||-+||+|..|.-++|+||.
T Consensus 11 ~AIERnalLE~ELdEKE~L~~~~QRLkD 38 (166)
T PF04880_consen 11 QAIERNALLESELDEKENLREEVQRLKD 38 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH-----
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556688899999999999999975
No 106
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.85 E-value=2.4e+02 Score=30.94 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=21.2
Q ss_pred hHHHHhhhhcCCCCCCcccchHHHHhHHHHHHHHHHhcc
Q 008199 56 YKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLR 94 (574)
Q Consensus 56 ~~~LLqHA~gvg~~ss~R~a~k~ka~H~aLak~L~~dl~ 94 (574)
+++|-.|-+.+- +.+.+ .+.-.-..||.+|-...+
T Consensus 23 ~kpl~r~yFa~~--~~Np~--eQF~~F~~L~~WL~~~~g 57 (359)
T PF10498_consen 23 MKPLSRHYFAVP--STNPG--EQFYYFTSLCAWLISKAG 57 (359)
T ss_pred CCCCCHHHhcCC--CCCch--HHHHHHHHHHHHHHHhcC
Confidence 667777766621 22332 455666778888887655
No 107
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=62.59 E-value=1.5e+02 Score=28.43 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 008199 251 EARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLME---EKDRLLQSYNEEIKKIQ 309 (574)
Q Consensus 251 ~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~me---Ek~~l~~~yneEi~kmQ 309 (574)
..+..++-|..|.+.+..-.+...........+..+++.... .++....+|.+++++|.
T Consensus 30 ~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~ 91 (146)
T PF08702_consen 30 YERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI 91 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH
Confidence 334444444444444444444444443333344444443332 23445555555555555
No 108
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.52 E-value=44 Score=32.02 Aligned_cols=79 Identities=23% Similarity=0.380 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcc
Q 008199 399 DLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSN 478 (574)
Q Consensus 399 ~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sN 478 (574)
++-..|.+|..||. .|.-++..|+..|..+...+. .+++...|.+|..++....+.|+.+.+ +...| +-
T Consensus 76 ~ld~ei~~L~~el~---~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~v-----s~ 144 (169)
T PF07106_consen 76 ELDAEIKELREELA---ELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLRS-GSKPV-----SP 144 (169)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----CH
Confidence 34445667776664 577788888888888888775 457888999999999888888887776 44442 34
Q ss_pred hHHHHHHHHH
Q 008199 479 DELQDARKEL 488 (574)
Q Consensus 479 dELqeARk~L 488 (574)
+|.+.+.+..
T Consensus 145 ee~~~~~~~~ 154 (169)
T PF07106_consen 145 EEKEKLEKEY 154 (169)
T ss_pred HHHHHHHHHH
Confidence 4555444443
No 109
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=62.34 E-value=2.4e+02 Score=31.42 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008199 253 RKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLES 332 (574)
Q Consensus 253 rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~ 332 (574)
-|-..+...|.--|+..-+.-.+|+-..-+....|+-.-|.+++....-..---+.|--..+..+..++|.-.||.+-++
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~ 360 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDS 360 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667766666777777777888888888888888887777667789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 008199 333 QKKELELRGEELEKRETQNENDRKILAE 360 (574)
Q Consensus 333 k~~eL~~r~k~L~k~~~~~~~er~kl~~ 360 (574)
-.++|+.+.++|+.+..+.+-.-.-|+-
T Consensus 361 L~keLeekkreleql~~q~~v~~saLdt 388 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQLAVKTSALDT 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999998877665544444443
No 110
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=60.65 E-value=3.4e+02 Score=31.99 Aligned_cols=33 Identities=42% Similarity=0.570 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 008199 394 KKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLN 429 (574)
Q Consensus 394 krEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~ 429 (574)
..+.|..-+.|-.||++|.++-. +|++|+.+|+
T Consensus 309 ~~e~e~~~~qI~~le~~l~~~~~---~leel~~kL~ 341 (629)
T KOG0963|consen 309 VEEREKHKAQISALEKELKAKIS---ELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 34667777888999999987643 4444444443
No 111
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=60.60 E-value=2.9e+02 Score=31.09 Aligned_cols=79 Identities=28% Similarity=0.295 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 008199 394 KKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIR 473 (574)
Q Consensus 394 krEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~k 473 (574)
+||..++.+--.+|-.. |-.||.+|+|-|--- -|+....-..-+--=+|.-=|.=|+.++.++..-.+.|-
T Consensus 462 QrEnQELnaHNQELnnR------LaaEItrLRtlltgd-GgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLk-- 532 (593)
T KOG4807|consen 462 QRENQELNAHNQELNNR------LAAEITRLRTLLTGD-GGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLK-- 532 (593)
T ss_pred HHhhHHHHHHHHHHhhH------HHHHHHHHHHHhccC-CCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHH--
Confidence 35555555555554443 456899999876421 111111111112234566667778888887777666665
Q ss_pred HhhcchHHHHHHH
Q 008199 474 ERKSNDELQDARK 486 (574)
Q Consensus 474 er~sNdELqeARk 486 (574)
||||-|-+
T Consensus 533 -----DELQtalr 540 (593)
T KOG4807|consen 533 -----DELQTALR 540 (593)
T ss_pred -----HHHHHHHh
Confidence 77777654
No 112
>PHA02562 46 endonuclease subunit; Provisional
Probab=60.05 E-value=2.9e+02 Score=30.97 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHH
Q 008199 253 RKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVE 288 (574)
Q Consensus 253 rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~ 288 (574)
..-...+..+..+++..+.++..++.........++
T Consensus 184 ~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~ 219 (562)
T PHA02562 184 QTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQ 219 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666555543333333
No 113
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=60.04 E-value=3.9e+02 Score=32.48 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=13.4
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhh
Q 008199 406 QLEKQLDAKQALALEIERLKGSL 428 (574)
Q Consensus 406 ~LekqL~~kQ~LELEi~qLkg~L 428 (574)
+++..++.-+.++-++++++.+|
T Consensus 682 ~~~~~~~~~~~~~~el~~~~~~l 704 (908)
T COG0419 682 QLEEKLEELEQLEEELEQLREEL 704 (908)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666666665
No 114
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=59.96 E-value=2.9 Score=48.84 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 008199 401 HNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQ 468 (574)
Q Consensus 401 ~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq 468 (574)
.....+|+.++..-+++..+++.++..|+-+ ..+-...+..+|++|...|..+..+|..+++...
T Consensus 536 ~~lk~~le~~~~~l~e~~~e~~~~~~~le~l---~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k 600 (713)
T PF05622_consen 536 SELKQKLEEHLEKLRELKDELQKKREQLEEL---EQELNQSLSQKIEELEEALQKKEEEMRAMEERYK 600 (713)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Confidence 3333455555555555555555555544432 1122333467899999999999999988876443
No 115
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=59.85 E-value=2e+02 Score=29.00 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcH----HHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHH
Q 008199 313 RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNE----NDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRK 388 (574)
Q Consensus 313 ~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~----~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlk 388 (574)
..++.++..........|+.-++..+..|.+++....++. .+-.|++. .+.-|..+-.+++.++..
T Consensus 106 ~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~----------k~~k~~~~~~~~~~~Y~~ 175 (236)
T cd07651 106 QSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNA----------KLNKAQSSINSSRRDYQN 175 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 3344455555555667777788888888888886655422 22233322 244456666677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhhhhhh
Q 008199 389 LAEDQKKQKEDLHNRIIQLEKQLDAKQALALE-IERLKGSLN 429 (574)
Q Consensus 389 Lve~hkrEke~~~~ki~~LekqL~~kQ~LELE-i~qLkg~L~ 429 (574)
.++...+=+......+ ..-++.=|.||-+ |+.|+..|.
T Consensus 176 ~v~~~~~~~~~~~~~~---~~~~~~~Q~lEe~Ri~~lk~~l~ 214 (236)
T cd07651 176 AVKALRELNEIWNREW---KAALDDFQDLEEERIQFLKSNCW 214 (236)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765444433333 2334444555443 555665444
No 116
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=58.96 E-value=4e+02 Score=32.31 Aligned_cols=95 Identities=28% Similarity=0.410 Sum_probs=64.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHh
Q 008199 380 QKADENVRKLAEDQKKQKEDLHNRIIQLEKQL-DAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEG 458 (574)
Q Consensus 380 ~kade~vlkLve~hkrEke~~~~ki~~LekqL-~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~ 458 (574)
|..+|+++|.++.|+.|...+.+-|.+-+++| ..||.-++|+.++|--++ +..-+++.++=+|+.
T Consensus 454 q~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~-----------eal~~~k~~q~kLe~--- 519 (861)
T PF15254_consen 454 QSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVE-----------EALVNVKSLQFKLEA--- 519 (861)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhHHH---
Confidence 34678999999999999999999999888875 678999999988874332 223344444444433
Q ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 008199 459 ELDDLEALNQTLIIRERKSNDELQDARKELINALK 493 (574)
Q Consensus 459 el~~~e~lnq~Li~ker~sNdELqeARk~LI~~l~ 493 (574)
-|.-|+.|-|--|+-.-|+.--| +|+.+|.
T Consensus 520 ----sekEN~iL~itlrQrDaEi~RL~-eLtR~LQ 549 (861)
T PF15254_consen 520 ----SEKENQILGITLRQRDAEIERLR-ELTRTLQ 549 (861)
T ss_pred ----HHhhhhHhhhHHHHHHHHHHHHH-HHHHHHH
Confidence 33447777776666666654433 4555553
No 117
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=58.81 E-value=3.2 Score=48.62 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCC------chHHHHHHH-------HHHHHHHHHHhhhh
Q 008199 395 KQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDG------DIEVLQKME-------TVLKDLREKEGELD 461 (574)
Q Consensus 395 rEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~------d~~~~~k~~-------~l~~~L~ek~~el~ 461 (574)
-|+..+-.|+..+|.-..+=..|++++++|...+.-..-+..+. .+++.+.|. .|.+++.....++.
T Consensus 288 Ee~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~ 367 (722)
T PF05557_consen 288 EEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELR 367 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 46677778888787777777789999999999998887765542 234444443 34455555666666
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHH
Q 008199 462 DLEALNQTLIIRERKSNDELQDARKE 487 (574)
Q Consensus 462 ~~e~lnq~Li~ker~sNdELqeARk~ 487 (574)
.++..|++|-..-....+++++++..
T Consensus 368 ~l~~~~~~Le~e~~~l~~~~~~l~~~ 393 (722)
T PF05557_consen 368 ELEEEIQELEQEKEQLLKEIEELEAS 393 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777765444455555555544
No 118
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=57.51 E-value=4.1e+02 Score=31.88 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=35.9
Q ss_pred hhHHHHHHHhhhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008199 271 KHLEEMKERFTETSNSVEKLMEEKDRLL---QSYNEEIKKIQLSA---RDHFQRIFTDHEKLKLQLESQKKELEL 339 (574)
Q Consensus 271 ~~l~elE~k~~e~s~sL~~~meEk~~l~---~~yneEi~kmQ~~a---~~~~~rI~~e~ekl~~eLe~k~~eL~~ 339 (574)
.|+...+--..+....+.....++++.+ ....+++..++..| .+-+.+|.+-+++|..-++.-++.+..
T Consensus 551 eYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 551 EYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555544332 34445566665555 444555556666555555555554433
No 119
>smart00030 CLb CLUSTERIN Beta chain.
Probab=56.55 E-value=54 Score=33.25 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008199 382 ADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALA 418 (574)
Q Consensus 382 ade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LE 418 (574)
...++|+-.++-|++||+|++...+.|++|.+.|.+=
T Consensus 44 eh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vC 80 (206)
T smart00030 44 ERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888999999999999999999999999854
No 120
>PTZ00121 MAEBL; Provisional
Probab=55.99 E-value=6e+02 Score=33.35 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008199 290 LMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQ 333 (574)
Q Consensus 290 ~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k 333 (574)
..+|...|-..-.+|.+..|..--+.+.+++.+..+.+.+-.-+
T Consensus 1571 ~aeE~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~kk 1614 (2084)
T PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614 (2084)
T ss_pred HHhhhhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 33444445555566666666655566666666666555544333
No 121
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=55.66 E-value=3e+02 Score=31.16 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH------HHHHH-------
Q 008199 243 TISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEE------IKKIQ------- 309 (574)
Q Consensus 243 Ti~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneE------i~kmQ------- 309 (574)
+|.-++++..-|.+.|-.-=...|+..|.-=|+-|.-.|..--.++++-.|++-|...|.++ ++++-
T Consensus 166 ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~g 245 (552)
T KOG2129|consen 166 KIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHG 245 (552)
T ss_pred HHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccC
Confidence 33344444444444333333344555555555666666666666677777777777777654 23322
Q ss_pred ---HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 008199 310 ---LSARDHFQRIFTDHEKLKLQLESQKK 335 (574)
Q Consensus 310 ---~~a~~~~~rI~~e~ekl~~eLe~k~~ 335 (574)
-.-..|++.+-.|.++||..|-+--+
T Consensus 246 D~a~~~~~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 246 DEAAAEKLHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11245666666667777766654433
No 122
>PTZ00332 paraflagellar rod protein; Provisional
Probab=55.65 E-value=3.8e+02 Score=30.98 Aligned_cols=131 Identities=16% Similarity=0.233 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008199 289 KLMEEKDRLLQSYNEEIKKIQLSA-----------------RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQN 351 (574)
Q Consensus 289 ~~meEk~~l~~~yneEi~kmQ~~a-----------------~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~ 351 (574)
-|.+-|..+.+++.+.+.++|... +..+.+.|++|+.-+.+-=+++.+|+.+-..|.
T Consensus 264 a~~daK~R~~~~CE~Dl~~i~d~iq~~~~eDa~~~KRy~a~k~~Se~f~~~N~e~Qe~~wnrI~eLer~Lq~l~------ 337 (589)
T PTZ00332 264 QMKDAKRRLKQRCETDLKHIHDAIQKADLEDAEAMKRYATNKEKSERFIRENEDRQEEAWNKIQDLERQLQRLG------ 337 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------
Confidence 344445666666666666655432 566788899998877777778888887666555
Q ss_pred HHHHHHHHHHHHHHhhhhchhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 008199 352 ENDRKILAEEIEKNAMRNNSLQLASLVQQK--ADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLN 429 (574)
Q Consensus 352 ~~er~kl~~e~~kn~~~~~~l~lA~~Eq~k--ade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~ 429 (574)
.+|...-+. -+++..-|.++ +-+..+..+..|+ |.|++-|.-.-+-+.
T Consensus 338 -~eR~~eV~r---------RIe~~~rEekRr~~yeqFl~~asQHk--------------------qrL~~tv~Ncd~a~~ 387 (589)
T PTZ00332 338 -TERFEEVKR---------RIEENDREEKRRVEYQQFLEVAGQHK--------------------KLLELTVYNCDLALR 387 (589)
T ss_pred -HHHHHHHHH---------HHHHHHHHHHhHhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Confidence 233322111 11222333332 3445566666655 577777777777666
Q ss_pred hhhccCC---CCchHHHHHHHHHHHHHHH
Q 008199 430 VMKHMGD---DGDIEVLQKMETVLKDLRE 455 (574)
Q Consensus 430 VmKhm~~---~~d~~~~~k~~~l~~~L~e 455 (574)
+.--|++ ++=..|+.+.+.+..+|.+
T Consensus 388 ~~~~lee~V~egc~~i~~r~DK~~q~L~e 416 (589)
T PTZ00332 388 CTGLVEELVSEGCAAVKARHDKTNQDLAA 416 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 6555543 3334556666666655544
No 123
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.46 E-value=4.7e+02 Score=32.01 Aligned_cols=173 Identities=25% Similarity=0.284 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH---HHHHH
Q 008199 290 LMEEKDRLLQSYNEEIKKIQLSA---RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKIL---AEEIE 363 (574)
Q Consensus 290 ~meEk~~l~~~yneEi~kmQ~~a---~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl---~~e~~ 363 (574)
..|+.+...+.|...|+.|+-.- +....+.-.+|+.|..++.....+.-.-.+|++-+.++-...+.++ -+..+
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e 730 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAE 730 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHH
Confidence 33555666677777777665322 2233334445555555555554444444555555555544333332 24455
Q ss_pred HHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------hhhhhhhhc
Q 008199 364 KNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERL----------KGSLNVMKH 433 (574)
Q Consensus 364 kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qL----------kg~L~VmKh 433 (574)
.+..+++.|..|..|-++ |.-+ ..-|.++|..|-. -|+++ +|.+.++-.
T Consensus 731 ~~~t~~eel~a~~~e~k~-------l~~~-----------q~~l~~~L~k~~~---~~es~k~~~~~a~~~~~~~~~~~~ 789 (970)
T KOG0946|consen 731 ASKTQNEELNAALSENKK-------LEND-----------QELLTKELNKKNA---DIESFKATQRSAELSQGSLNDNLG 789 (970)
T ss_pred hccCChHHHHHHHHHHHH-------HHHH-----------HHHHHHHHHhhhH---HHHHHHHHHhhhhcccchhhhhhh
Confidence 666667777766655432 2111 1222222221111 11111 233333322
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHH
Q 008199 434 MGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDA 484 (574)
Q Consensus 434 m~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeA 484 (574)
-.. .-.+.++++.+....|++-..++..++.--|||+.+--..++.+..+
T Consensus 790 ~qe-qv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m 839 (970)
T KOG0946|consen 790 DQE-QVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESM 839 (970)
T ss_pred hHH-HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 110 11233445777777788888888888888888887776677766554
No 124
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.35 E-value=4e+02 Score=31.15 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=42.0
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhc
Q 008199 231 IGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTET 283 (574)
Q Consensus 231 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~ 283 (574)
.+.|++---+ ++++..|-..+-.++...++++|+...+...+|++++++.
T Consensus 205 Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 205 YTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655433 8889999999999999999999999999999999999843
No 125
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.89 E-value=1.9e+02 Score=27.16 Aligned_cols=99 Identities=30% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHH
Q 008199 300 SYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQ 379 (574)
Q Consensus 300 ~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq 379 (574)
.+.+.+..-....+-...+.-..+++|+.+++...+++..-......+..........+..+++. ++.+.-
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee---------~~klk~ 122 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE---------LQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 008199 380 QKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLN 429 (574)
Q Consensus 380 ~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~ 429 (574)
.-++-...--+|-.++ |.||..|+.+|.
T Consensus 123 ~~~~~~tq~~~e~rkk----------------------e~E~~kLk~rL~ 150 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKK----------------------EREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhc
No 126
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=54.28 E-value=7.3 Score=24.90 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=14.5
Q ss_pred eeccCCCCCCccccChHHHHhhh
Q 008199 41 FTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 41 ~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
|.||.|+.. +..-..|.+|-
T Consensus 1 y~C~~C~~~---f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGKS---FSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTEE---ESSHHHHHHHH
T ss_pred CCCCCCCCc---cCCHHHHHHHH
Confidence 789999743 55667777774
No 127
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=53.81 E-value=5e+02 Score=31.77 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 309 QLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKR 347 (574)
Q Consensus 309 Q~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~ 347 (574)
|..+..++.+.+...++|-..|++|.+....--+.|.+.
T Consensus 891 q~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~ 929 (1259)
T KOG0163|consen 891 QREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKI 929 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556666777777777777777777544443333333333
No 128
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=53.77 E-value=3.9e+02 Score=30.53 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 008199 395 KQKEDLHNRIIQLEKQLDAKQALA 418 (574)
Q Consensus 395 rEke~~~~ki~~LekqL~~kQ~LE 418 (574)
..-+.+..+|-.||+-++.....+
T Consensus 378 ~~l~~~~~~~~~le~~~~~~~~~~ 401 (582)
T PF09731_consen 378 AKLAELNSRLKALEEALDARSEAE 401 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666665555544333
No 129
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=53.60 E-value=1.7e+02 Score=26.31 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=17.2
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhc
Q 008199 408 EKQLDAKQALALEIERLKGSLNVMKH 433 (574)
Q Consensus 408 ekqL~~kQ~LELEi~qLkg~L~VmKh 433 (574)
+.+-..++..+.||.+|+..|..|+.
T Consensus 70 ~~e~k~~~~k~~ei~~l~~~l~~l~~ 95 (126)
T PF13863_consen 70 EEEKKKKEEKEAEIKKLKAELEELKS 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777778888877776644
No 130
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=53.46 E-value=4e+02 Score=30.59 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=16.1
Q ss_pred HHHHHhhhcCCChhhhhhhcc
Q 008199 190 SFEKAYEADHYGKKDWYASNQ 210 (574)
Q Consensus 190 ~fe~~Fe~~~~GKkdW~~~~~ 210 (574)
.|-..|.+-++|-.++...+.
T Consensus 108 ~fit~YNAv~R~~~~~~~~~Y 128 (489)
T PF05262_consen 108 TFITIYNAVYRGDLDYFKKKY 128 (489)
T ss_pred HHHHHHHHHHcCCHHHHHHHh
Confidence 356678888999888887655
No 131
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.36 E-value=5.5e+02 Score=32.15 Aligned_cols=117 Identities=27% Similarity=0.430 Sum_probs=72.5
Q ss_pred eeeeccCCCCCCCcchhhhhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHH
Q 008199 217 AWVARSDDYNLKNIIGDHLRKIGDLK-TISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKD 295 (574)
Q Consensus 217 GwvAradD~~~~~~iG~~LrK~gdLK-Ti~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~ 295 (574)
-++|+..++|+-..=|+...+.|-|. -|-|- .+.-+..++| +..-...+.+|+.++++ +++++++.+
T Consensus 631 ~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~-------krsrLe~~k~-~~~~~~~~~~l~~~L~~----~r~~i~~~~ 698 (1200)
T KOG0964|consen 631 LRLAKKHELNCITLSGDQVSKKGVLTGGYEDQ-------KRSRLELLKN-VNESRSELKELQESLDE----VRNEIEDID 698 (1200)
T ss_pred HHHHHhcCCCeEEeccceecccCCccccchhh-------hhhHHHHHhh-hHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 36899999998888899999998876 33321 1122333333 34445566777777766 677777877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Q 008199 296 RLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKK-------ELELRGEELEKRET 349 (574)
Q Consensus 296 ~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~-------eL~~r~k~L~k~~~ 349 (574)
+-+.+.+-+|++.+ -....++.++++|+.++-.... .|+-..++|..+.+
T Consensus 699 ~~i~q~~~~~qk~e----~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 699 QKIDQLNNNMQKVE----NDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 77777776665543 2334455666666666655443 34555555555444
No 132
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=53.29 E-value=2.8e+02 Score=33.42 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 008199 306 KKIQLSARDHFQRIFTDHEKLKLQLESQKKELE 338 (574)
Q Consensus 306 ~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~ 338 (574)
+++...|++.+++++.+- +.+++.-.++|.
T Consensus 560 ~~~~~~a~~ea~~~~~~a---~~~~~~~i~~lk 589 (771)
T TIGR01069 560 RNKKLELEKEAQEALKAL---KKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344444455555554443 344444444443
No 133
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.23 E-value=97 Score=36.24 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcc
Q 008199 395 KQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHM 434 (574)
Q Consensus 395 rEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm 434 (574)
+|-+....+|-.|++.|..+- .+|++|+++|.-.+.|
T Consensus 474 rei~~~~~~I~~L~~~L~e~~---~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 474 REIRARDRRIERLEKELEEKK---KRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 555666778888888887663 4677777776655543
No 134
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=53.06 E-value=4.8e+02 Score=31.41 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 008199 246 EMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKE 278 (574)
Q Consensus 246 ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~ 278 (574)
|+++-..-|+.+.|.-|.+.|+.....|..+|.
T Consensus 342 d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~ 374 (961)
T KOG4673|consen 342 DDVQLELDKTKKEIKMLNNALEAREAQLLADEI 374 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777788888888877776666543
No 135
>PRK04863 mukB cell division protein MukB; Provisional
Probab=51.89 E-value=6.7e+02 Score=32.74 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Q 008199 442 VLQKMETVLKDLREKEGELDDLE 464 (574)
Q Consensus 442 ~~~k~~~l~~~L~ek~~el~~~e 464 (574)
...++.++..+|.+.+.+|..++
T Consensus 447 F~aklee~e~qL~elE~kL~~le 469 (1486)
T PRK04863 447 FQAKEQEATEELLSLEQKLSVAQ 469 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554443
No 136
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=51.68 E-value=5.6e+02 Score=31.80 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=12.5
Q ss_pred HhhhCCCceEe--ecCC---eeeccCCC
Q 008199 25 KKLKSGNHSVK--ISDE---AFTCPYCP 47 (574)
Q Consensus 25 ~~Lk~g~~kVk--~~~~---~~~CP~C~ 47 (574)
..|.+|+.-|. +..+ ++.|.||.
T Consensus 792 d~l~~GYrhv~LRse~Nqpl~lp~Lfv~ 819 (1189)
T KOG1265|consen 792 DGLNAGYRHVCLRSESNQPLTLPALFVY 819 (1189)
T ss_pred hcccCcceeEEecCCCCCccccceeEEE
Confidence 46788876554 2222 34555654
No 137
>PLN03120 nucleic acid binding protein; Provisional
Probab=51.58 E-value=32 Score=36.09 Aligned_cols=58 Identities=17% Similarity=0.120 Sum_probs=40.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCChhhhHhHHHHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEK 193 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~fe~ 193 (574)
++.|-|++. ..+..+|++.|+. |.+. .+... ....++|++.|.|... .+...|+.|..
T Consensus 6 tVfVgNLs~---------~tTE~dLrefFS~--~G~I~~V~I~-~d~~~~GfAFVtF~d~-eaAe~AllLnG 64 (260)
T PLN03120 6 TVKVSNVSL---------KATERDIKEFFSF--SGDIEYVEMQ-SENERSQIAYVTFKDP-QGAETALLLSG 64 (260)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEe-ecCCCCCEEEEEeCcH-HHHHHHHHhcC
Confidence 467889886 4577899999998 6553 44433 3334689999999654 77788886543
No 138
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=50.95 E-value=27 Score=38.99 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=47.6
Q ss_pred eeecce--EEEeeccccccCCCcccccCchhHHHHHHhcCC-CCcccccccCCCCCceeEEEeeCCChhhhHhHHHHHHH
Q 008199 118 FVWPWT--GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGF-NPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKA 194 (574)
Q Consensus 118 iVWPwm--gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF-~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~fe~~ 194 (574)
.++||. ..|-|+|. -.+...|++.|+..|. .+..++.+-...+.+|+++|+|.+--.- ..|+..=++
T Consensus 389 ~~~~ps~~L~v~NLp~---------~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A-~~Al~~ln~ 458 (481)
T TIGR01649 389 NIQPPSATLHLSNIPL---------SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDA-VEALIALNH 458 (481)
T ss_pred ccCCCCcEEEEecCCC---------CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHH-HHHHHHhcC
Confidence 457885 45668885 3467899999999554 3555666545556689999999984443 355554444
Q ss_pred hhhcC
Q 008199 195 YEADH 199 (574)
Q Consensus 195 Fe~~~ 199 (574)
+...+
T Consensus 459 ~~l~~ 463 (481)
T TIGR01649 459 HQLNE 463 (481)
T ss_pred CccCC
Confidence 44443
No 139
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=50.61 E-value=2.7e+02 Score=27.69 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008199 300 SYNEEIKKIQLSAR-----------DHFQRIFTDHEKLKLQLESQKKELEL 339 (574)
Q Consensus 300 ~yneEi~kmQ~~a~-----------~~~~rI~~e~ekl~~eLe~k~~eL~~ 339 (574)
.|++++..+...+. .+++.+..||.-|+.-|+.--..|+.
T Consensus 45 ~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~leEhq~alel 95 (181)
T PF05769_consen 45 QYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQSLEEHQSALEL 95 (181)
T ss_pred HHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666655555554 44555666777777766665555554
No 140
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=50.38 E-value=5.4e+02 Score=31.16 Aligned_cols=58 Identities=17% Similarity=0.343 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhc---cCC-CCchHHHHHHHHHHHHHHHHHh
Q 008199 401 HNRIIQLEKQLDAKQALALEIERLKGSLNVMKH---MGD-DGDIEVLQKMETVLKDLREKEG 458 (574)
Q Consensus 401 ~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKh---m~~-~~d~~~~~k~~~l~~~L~ek~~ 458 (574)
-.||-.|++|..++=.=-+-.-.||++.+-+|- ..+ --|.+.+.||+.|..+.+.+..
T Consensus 648 k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~ 709 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIA 709 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 346666666655443322333334444433333 222 3466667777777777776665
No 141
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=50.32 E-value=2.9e+02 Score=28.05 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHH
Q 008199 442 VLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARK 486 (574)
Q Consensus 442 ~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk 486 (574)
+..+|..|...|.+-+...+..+.-.+.|-..--.-.++|...+.
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888777777777777776666544444555554443
No 142
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=49.93 E-value=6.2e+02 Score=31.77 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=8.2
Q ss_pred CcceeeeeccCC
Q 008199 213 SGLYAWVARSDD 224 (574)
Q Consensus 213 ~~LYGwvAradD 224 (574)
.+|-|+=|+.|-
T Consensus 285 eQLq~lrarse~ 296 (1195)
T KOG4643|consen 285 EQLQKLRARSEG 296 (1195)
T ss_pred HHHHHHHhcccc
Confidence 467777777765
No 143
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.68 E-value=5.3e+02 Score=30.92 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 008199 333 QKKELELRGEELEKRETQNENDRKILA 359 (574)
Q Consensus 333 k~~eL~~r~k~L~k~~~~~~~er~kl~ 359 (574)
.++||+.=..+|..+++.-+.-+.+++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555444455543
No 144
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=48.83 E-value=3.5e+02 Score=28.62 Aligned_cols=159 Identities=19% Similarity=0.301 Sum_probs=94.2
Q ss_pred HHhhhcCCChhhhhhhccCCCcceeeeeccCCC---CCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 193 KAYEADHYGKKDWYASNQEKSGLYAWVARSDDY---NLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVK 269 (574)
Q Consensus 193 ~~Fe~~~~GKkdW~~~~~~~~~LYGwvAradD~---~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~k 269 (574)
+.|.++|+.=++-... .+.||.-+..++.- ++...+. .-.|.+|||.+..+..+-...--.|.+-|...++-+
T Consensus 72 kLY~ADGyAVkELLKi---a~lLy~A~~~~~~~e~~~~~~~~~-l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr 147 (267)
T PF10234_consen 72 KLYQADGYAVKELLKI---ASLLYSAMKSAPSDEEDDSLFKFD-LSSKIQDLKAARQLASEITQRGASLYDLLGKEVELR 147 (267)
T ss_pred HHHHhhHHHHHHHHHH---HHHHHHHHhCCCccccccchhhcc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHH
Confidence 4455555544444432 23566655555221 1111121 124567999999999888888888888898888777
Q ss_pred HhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008199 270 DKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRET 349 (574)
Q Consensus 270 n~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~ 349 (574)
......+-.-. .+.. -++.+++--..+..--+..+.....+-.+...|...++-++.|||+-.|.|.-++.
T Consensus 148 ~~R~~a~~r~~-----e~~~----iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 148 EERQRALARPL-----ELNE----IEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHcCCc-----CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76666663211 1111 12222222222222223334455566677778888899999999999999988887
Q ss_pred hcHH---HHHHHHHHHHH
Q 008199 350 QNEN---DRKILAEEIEK 364 (574)
Q Consensus 350 ~~~~---er~kl~~e~~k 364 (574)
-.+. |..+|+.|.++
T Consensus 219 vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 219 VRPAFMDEYEKLEEELQK 236 (267)
T ss_pred cChHHHHHHHHHHHHHHH
Confidence 6653 45556655554
No 145
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=48.51 E-value=3.8e+02 Score=28.86 Aligned_cols=101 Identities=22% Similarity=0.403 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHH
Q 008199 389 LAEDQKKQKEDLHNRIIQLEKQLDAKQA----LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLE 464 (574)
Q Consensus 389 Lve~hkrEke~~~~ki~~LekqL~~kQ~----LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e 464 (574)
=+..-+.+-.++|++|.+|=.|.++-.. +=-++..++-.-.-|.- +-.+...+++++++++.....++.+++
T Consensus 166 ei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he----~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHE----EFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344455666778888888777744332 11233333333333321 223445678888888888888888887
Q ss_pred HHHHHHHHHH-----hhcchHHHHHHHHHHHHHH
Q 008199 465 ALNQTLIIRE-----RKSNDELQDARKELINALK 493 (574)
Q Consensus 465 ~lnq~Li~ke-----r~sNdELqeARk~LI~~l~ 493 (574)
..-.+|..++ |..-++|++-.+++-.-|.
T Consensus 242 k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 242 KKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777544 4445667766666655554
No 146
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.51 E-value=1.5e+02 Score=27.68 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 008199 415 QALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLI 471 (574)
Q Consensus 415 Q~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li 471 (574)
..|+-+++.|+.+.+.+=-|-| +-.++.+|-..++.||..|..+.|
T Consensus 71 ~~L~~el~~l~~ry~t~LellG-----------EK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLG-----------EKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554433433 334445555555666666666555
No 147
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=48.10 E-value=2.8e+02 Score=27.21 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=64.9
Q ss_pred eeeccCCCCCCCcch--hhhhcccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHh-hHHHHHHHhhhchHHHHHHHH
Q 008199 218 WVARSDDYNLKNIIG--DHLRKIGDLKTISEMMEEEAR--KQNLLVSNLTNMIEVKDK-HLEEMKERFTETSNSVEKLME 292 (574)
Q Consensus 218 wvAradD~~~~~~iG--~~LrK~gdLKTi~ei~~E~~r--k~~~lv~~L~n~i~~kn~-~l~elE~k~~e~s~sL~~~me 292 (574)
|++.+++..+.+..+ .|||-.+-|-+...|..-+.+ +...+=..+..+|+.+.. .-.+.+...-+--.--.++-.
T Consensus 15 ~~~~~~~~~~~~~~~~~s~LR~~tallDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~r 94 (157)
T PF15236_consen 15 NLGKASRVTSMQSSSKTSFLRGMTALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAR 94 (157)
T ss_pred hhcccccccccccccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 556666666655555 899999888888887766654 333444455666665543 344455555555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008199 293 EKDRLLQSYNEEIKKIQLSARD 314 (574)
Q Consensus 293 Ek~~l~~~yneEi~kmQ~~a~~ 314 (574)
++..|...|-+|..++.++--.
T Consensus 95 ere~~q~~~E~E~~~~~~KEe~ 116 (157)
T PF15236_consen 95 EREELQRQFEEEQRKQREKEEE 116 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998877755433
No 148
>PLN03121 nucleic acid binding protein; Provisional
Probab=47.88 E-value=30 Score=35.97 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=43.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHHHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEK 193 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~fe~ 193 (574)
.|++.|-|++. ..+...|++.|+. |.+..-..+..+.+..|++.|.|.. -.+...|+.|..
T Consensus 5 g~TV~V~NLS~---------~tTE~dLrefFS~--~G~I~~V~I~~D~et~gfAfVtF~d-~~aaetAllLnG 65 (243)
T PLN03121 5 GYTAEVTNLSP---------KATEKDVYDFFSH--CGAIEHVEIIRSGEYACTAYVTFKD-AYALETAVLLSG 65 (243)
T ss_pred ceEEEEecCCC---------CCCHHHHHHHHHh--cCCeEEEEEecCCCcceEEEEEECC-HHHHHHHHhcCC
Confidence 37899999986 4467899999998 6665555555556677899999964 344466665543
No 149
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=47.87 E-value=2.9e+02 Score=27.36 Aligned_cols=161 Identities=16% Similarity=0.217 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhH
Q 008199 294 KDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQ 373 (574)
Q Consensus 294 k~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~ 373 (574)
-..++..|-.+|..--..++..+.+++.....+..+++.-..++..|..+...--...+.+--+.....+.. ..-+
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~----~e~~ 99 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKAD----LEEQ 99 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHH
Confidence 345555566666666666666666666666666666666666666666655433222221211111110000 0001
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HH---HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHH
Q 008199 374 LASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAK-QA---LALEIERLKGSLNVMKHMGDDGDIEVLQKMETV 449 (574)
Q Consensus 374 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~k-Q~---LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l 449 (574)
++.+ ...+......-+.+...|.+|+.+|..- ++ |-.--..-+-+..|-..+.+-+-.+....++.+
T Consensus 100 ~~~l---------~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~ 170 (221)
T PF04012_consen 100 AERL---------EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERM 170 (221)
T ss_pred HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 1222 2233334444444444455554444321 11 112222223333444455554445556667777
Q ss_pred HHHHHHHHhhhhhHHHHH
Q 008199 450 LKDLREKEGELDDLEALN 467 (574)
Q Consensus 450 ~~~L~ek~~el~~~e~ln 467 (574)
.+...+.+...+.+..+.
T Consensus 171 e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 171 EEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 777666666665555555
No 150
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=47.67 E-value=34 Score=38.45 Aligned_cols=66 Identities=32% Similarity=0.423 Sum_probs=46.6
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCChhhhHhHHHHHHHhhhcC
Q 008199 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSFEKAYEADH 199 (574)
Q Consensus 124 gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~fe~~Fe~~~ 199 (574)
+.|.|||. |=+| +.|++-+++++=...-|..|....| .+|+|||+|. +-.+.+-|+.--+-|+..+
T Consensus 47 vfItNIpy----d~rW-----qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk-~~E~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 47 VFITNIPY----DYRW-----QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFK-DPENVQKALEKLNKYEVNG 113 (608)
T ss_pred EEEecCcc----hhhh-----HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEee-CHHHHHHHHHHhhhccccC
Confidence 67999997 3344 5688888886655666777887777 6899999995 4555666655555666544
No 151
>PRK00106 hypothetical protein; Provisional
Probab=47.61 E-value=5.1e+02 Score=30.08 Aligned_cols=8 Identities=38% Similarity=0.659 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 008199 337 LELRGEEL 344 (574)
Q Consensus 337 L~~r~k~L 344 (574)
|+.|..+|
T Consensus 113 LekRee~L 120 (535)
T PRK00106 113 LDRKDENL 120 (535)
T ss_pred HHHHHHHH
Confidence 33333333
No 152
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=47.28 E-value=5.3e+02 Score=30.25 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH
Q 008199 254 KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE 293 (574)
Q Consensus 254 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meE 293 (574)
.....|..|..+|+.....++.+...+.++...+..+..+
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~ 371 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAE 371 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655555555544444443
No 153
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.10 E-value=3.4e+02 Score=27.98 Aligned_cols=67 Identities=25% Similarity=0.376 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 008199 298 LQSYNEEIKKIQLSARDHFQRIFTDHEKLK------LQLESQKKELELRGEELEKRETQNENDRKILAEEIEK 364 (574)
Q Consensus 298 ~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~------~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~k 364 (574)
+..|.++++..+..-.+...+|-.=.++++ ..|+.+..+++.-...|......+..+|..|+.+...
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655555544443333332 3455566666666666666666666666666555544
No 154
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.94 E-value=8.4 Score=42.33 Aligned_cols=10 Identities=60% Similarity=1.786 Sum_probs=8.4
Q ss_pred eeeccCCCCC
Q 008199 40 AFTCPYCPKK 49 (574)
Q Consensus 40 ~~~CP~C~gk 49 (574)
+|.|||||.-
T Consensus 374 sfKCPYCP~e 383 (394)
T KOG2817|consen 374 SFKCPYCPVE 383 (394)
T ss_pred eeeCCCCCcc
Confidence 5999999954
No 155
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.36 E-value=2.7e+02 Score=32.83 Aligned_cols=60 Identities=22% Similarity=0.406 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhH
Q 008199 386 VRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDL 463 (574)
Q Consensus 386 vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~ 463 (574)
+...+++.+++.+.+.+++-++-..+..+-....||+++. ..|+.|+.+|.++....+.|
T Consensus 441 L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~------------------~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 441 LKRELEELKREIEKLESELERFRREVRDKVRKDREIRARD------------------RRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777777777777777777777776654 34555566665555555444
No 156
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=46.31 E-value=97 Score=29.31 Aligned_cols=85 Identities=28% Similarity=0.374 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008199 324 EKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNR 403 (574)
Q Consensus 324 ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~k 403 (574)
+++..+|.++...+|.-|.+|+- +-+++..|..+. +.-+.+.+. ..=..|+...+.+
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLef-------q~kr~~~e~~~~----~~~~~~~i~------------~q~~~e~~~r~e~ 75 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEF-------QGKRMIKEIKKQ----NAQQIQSIQ------------QQFEQEKQERLEQ 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTT----SSHHHHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhc----chhhHHHHH------------HHHHHHHHHHHHH
Confidence 45667788888888888877754 333333333321 112222222 2224567777888
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 008199 404 IIQLEKQLDAKQALALEIERLKGSLNVM 431 (574)
Q Consensus 404 i~~LekqL~~kQ~LELEi~qLkg~L~Vm 431 (574)
+-+|..||.+=+.|+|.-+=..|+++-+
T Consensus 76 k~~l~~ql~qv~~L~lgsEv~qg~vE~~ 103 (131)
T PF11068_consen 76 KNQLLQQLEQVQKLELGSEVVQGQVESF 103 (131)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEeeeeeEEE
Confidence 8899999999999999877667766543
No 157
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=46.05 E-value=6.6e+02 Score=30.94 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 008199 332 SQKKELELRGEELEKRETQNENDRKILAE 360 (574)
Q Consensus 332 ~k~~eL~~r~k~L~k~~~~~~~er~kl~~ 360 (574)
++--+|.....|+...-+.+..+.+.|+.
T Consensus 173 nk~~~lt~~~~q~~tkl~e~~~en~~le~ 201 (1265)
T KOG0976|consen 173 DKNEELNEFNMEFQTKLAEANREKKALEE 201 (1265)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555544555555554443
No 158
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=46.01 E-value=11 Score=24.96 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.0
Q ss_pred eeeccCCCCCCccccChHHHHhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
+|.|+.|.. .+..+..|+.|-
T Consensus 1 ~~~C~~C~~---~F~~~~~l~~H~ 21 (27)
T PF13912_consen 1 PFECDECGK---TFSSLSALREHK 21 (27)
T ss_dssp SEEETTTTE---EESSHHHHHHHH
T ss_pred CCCCCccCC---ccCChhHHHHHh
Confidence 589999973 366789999995
No 159
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=45.92 E-value=3.1e+02 Score=29.39 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Q 008199 442 VLQKMETVLKDLREKEGELDDLE 464 (574)
Q Consensus 442 ~~~k~~~l~~~L~ek~~el~~~e 464 (574)
.++.|+.|..+|.-...+|+...
T Consensus 107 ~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 107 CKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788877777777776544
No 160
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=45.74 E-value=5.5e+02 Score=29.95 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHH---------HHHHHHHHHHHhhh
Q 008199 394 KKQKEDLHNRIIQLEKQLDA----KQALALEIERLKGSLNVMKHMGDDGDIEVLQKM---------ETVLKDLREKEGEL 460 (574)
Q Consensus 394 krEke~~~~ki~~LekqL~~----kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~---------~~l~~~L~ek~~el 460 (574)
++|...+...|..+-++||+ +..++..++-|...|+.|+.+...+-.+...+. +..+.+|..-+.||
T Consensus 175 k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~ei 254 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREI 254 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHH
Confidence 34555555555555555554 678999999999999999987665444444331 34455555555555
No 161
>PRK12705 hypothetical protein; Provisional
Probab=44.82 E-value=5.4e+02 Score=29.64 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHH
Q 008199 330 LESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQK-KQKEDLHNRI 404 (574)
Q Consensus 330 Le~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hk-rEke~~~~ki 404 (574)
|+.+...|+.+..+|++.+..-......|+...+ .....--..|.+-+..|.+.+++-+++.- .|.-.+.+++
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~--~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~ 166 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSARELELEELEK--QLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKI 166 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544443333333332211 11122223455666667888888887654 3333333333
No 162
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=44.18 E-value=36 Score=35.40 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=38.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGL 185 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf 185 (574)
.++|-|+|. . .+...|.+.|+. |.++ .|+.++++ ....|+++|.|.+--.-.
T Consensus 271 ~lfV~NL~~-~--------~~e~~L~~~F~~--fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 271 CIFVYNLSP-D--------TDETVLWQLFGP--FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred EEEEeCCCC-C--------CCHHHHHHHHHh--CCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 377889886 2 366889999999 8764 66766664 457899999997754443
No 163
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.36 E-value=3.6e+02 Score=28.82 Aligned_cols=30 Identities=7% Similarity=0.146 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCccEEEEeCCce
Q 008199 529 ERASELCSLWEEYLKDPDWHPFKVITAEGKH 559 (574)
Q Consensus 529 ~~a~~lcS~Wq~~l~dp~WhPFkvv~~~g~~ 559 (574)
..++-|...=-..|+ ...+-|+.|..|..+
T Consensus 176 Gq~~LLL~~la~~l~-~~f~~y~l~P~Gs~S 205 (314)
T PF04111_consen 176 GQTALLLQTLAKKLN-FKFQRYRLVPMGSFS 205 (314)
T ss_dssp HHHHHHHHHHHHHCT----SSEEEE--GGG-
T ss_pred HHHHHHHHHHHHHhC-CCcccceeEecCCCC
Confidence 344444444444443 555566666554433
No 164
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.30 E-value=3e+02 Score=27.87 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=13.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 008199 316 FQRIFTDHEKLKLQLESQKKELEL 339 (574)
Q Consensus 316 ~~rI~~e~ekl~~eLe~k~~eL~~ 339 (574)
+..+-.+|.+|+.+|+.-..+++.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677776666655444433
No 165
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=42.63 E-value=16 Score=27.87 Aligned_cols=11 Identities=36% Similarity=1.141 Sum_probs=8.7
Q ss_pred CeeeccCCCCC
Q 008199 39 EAFTCPYCPKK 49 (574)
Q Consensus 39 ~~~~CP~C~gk 49 (574)
..++||+|++.
T Consensus 20 ~~~~Cp~CG~~ 30 (46)
T PRK00398 20 TGVRCPYCGYR 30 (46)
T ss_pred CceECCCCCCe
Confidence 37999999754
No 166
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=42.62 E-value=3.3e+02 Score=26.54 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 008199 383 DENVRKLAEDQKKQKEDLHN 402 (574)
Q Consensus 383 de~vlkLve~hkrEke~~~~ 402 (574)
+.++.+.++.-|+++++.+-
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i 131 (155)
T PRK06569 112 IEDINLAAKQFRTNKSEAII 131 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 44456666666666665543
No 167
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.49 E-value=2.4e+02 Score=27.93 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCC--chHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 008199 413 AKQALALEIERLKGSLNVMKHMGDDG--DIEVLQKMETVLKDLREKEGELDDLEALNQTLII 472 (574)
Q Consensus 413 ~kQ~LELEi~qLkg~L~VmKhm~~~~--d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ 472 (574)
..+.++.+|..|+..|+..+--..+. -.....++.+|..++.....+|......+...|.
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 33466777888888888775533322 2334566777888888777777766666655553
No 168
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=42.44 E-value=5.5e+02 Score=29.00 Aligned_cols=16 Identities=0% Similarity=0.038 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHHHH
Q 008199 439 DIEVLQKMETVLKDLR 454 (574)
Q Consensus 439 d~~~~~k~~~l~~~L~ 454 (574)
...+++.|..+.....
T Consensus 233 ~~~L~~~Ias~e~~aA 248 (420)
T COG4942 233 ESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666664443
No 169
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=42.21 E-value=25 Score=23.97 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 008199 395 KQKEDLHNRIIQLEKQLDA 413 (574)
Q Consensus 395 rEke~~~~ki~~LekqL~~ 413 (574)
+|.+.+.++|..||+||..
T Consensus 1 ~E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSE 19 (23)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 3677888999999999974
No 170
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=41.95 E-value=56 Score=27.97 Aligned_cols=43 Identities=23% Similarity=0.406 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008199 308 IQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQ 350 (574)
Q Consensus 308 mQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~ 350 (574)
+++.+-.....++.+|-.|+.++++-.++|....+.|.+.+..
T Consensus 30 l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 30 LQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677888899999999999999999999999998876543
No 171
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.84 E-value=7.3e+02 Score=30.23 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 008199 391 EDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKG 426 (574)
Q Consensus 391 e~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg 426 (574)
++-.++-+.+...+..++.++......++.+.+|.|
T Consensus 420 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 455 (908)
T COG0419 420 EELERELEELEEEIKKLEEQINQLESKELMIAELAG 455 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666666666665555666777765
No 172
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=41.69 E-value=14 Score=25.07 Aligned_cols=13 Identities=38% Similarity=1.260 Sum_probs=10.6
Q ss_pred ecCCeeeccCCCC
Q 008199 36 ISDEAFTCPYCPK 48 (574)
Q Consensus 36 ~~~~~~~CP~C~g 48 (574)
.++.+|.||+|+.
T Consensus 10 ~~~k~~~C~~C~k 22 (26)
T PF13465_consen 10 TGEKPYKCPYCGK 22 (26)
T ss_dssp SSSSSEEESSSSE
T ss_pred CCCCCCCCCCCcC
Confidence 4678899999973
No 173
>smart00360 RRM RNA recognition motif.
Probab=40.77 E-value=36 Score=25.25 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=30.2
Q ss_pred ccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHH
Q 008199 141 GESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAM 189 (574)
Q Consensus 141 G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~ 189 (574)
+.+...|++.|.. |.+. .+.....+ ..++|++.|.|.. -..-..|+
T Consensus 7 ~~~~~~l~~~f~~--~g~v~~~~i~~~~~~~~~~~~a~v~f~~-~~~a~~a~ 55 (71)
T smart00360 7 DVTEEELRELFSK--FGKIESVRLVRDKDTGKSKGFAFVEFES-EEDAEKAL 55 (71)
T ss_pred ccCHHHHHHHHHh--hCCEeEEEEEeCCCCCCCCceEEEEeCC-HHHHHHHH
Confidence 4577889999998 7643 44444443 3578899999965 34444443
No 174
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=40.37 E-value=18 Score=27.11 Aligned_cols=16 Identities=13% Similarity=0.584 Sum_probs=11.9
Q ss_pred eEeecCCeeeccCCCC
Q 008199 33 SVKISDEAFTCPYCPK 48 (574)
Q Consensus 33 kVk~~~~~~~CP~C~g 48 (574)
+|...+++|.||||..
T Consensus 17 ~~~~~~~~w~C~~C~~ 32 (40)
T PF04810_consen 17 QFDDGGKTWICNFCGT 32 (40)
T ss_dssp EEETTTTEEEETTT--
T ss_pred eEcCCCCEEECcCCCC
Confidence 6666678999999974
No 175
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=40.23 E-value=3.4e+02 Score=25.98 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 253 RKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM-EEKDRLLQSYNEEIKKIQLSARDHFQRI 319 (574)
Q Consensus 253 rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~m-eEk~~l~~~yneEi~kmQ~~a~~~~~rI 319 (574)
..+..+|.++...........+.-+..|++++.+|++++ .-.+...-++-.-|+-+|..-+...++|
T Consensus 53 ~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki 120 (146)
T PF08702_consen 53 SEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKI 120 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Confidence 356677777777777777777788889999999999999 7788888888888888877666666555
No 176
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.22 E-value=5.1e+02 Score=28.02 Aligned_cols=59 Identities=25% Similarity=0.380 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 008199 392 DQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELD 461 (574)
Q Consensus 392 ~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~ 461 (574)
.|..|--.++.+|..|++.+ +.+=.|.+.|...|...|-. ...+..--.+|++|..+.-
T Consensus 231 rQQEEIt~LlsqivdlQ~r~---k~~~~EnEeL~q~L~~ske~--------Q~~L~aEL~elqdkY~E~~ 289 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRC---KQLAAENEELQQHLQASKES--------QRQLQAELQELQDKYAECM 289 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 45566667788888888766 45678899999999988643 3333333445566665543
No 177
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=40.21 E-value=5e+02 Score=27.89 Aligned_cols=105 Identities=26% Similarity=0.385 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---
Q 008199 326 LKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHN--- 402 (574)
Q Consensus 326 l~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~--- 402 (574)
|-.+|+--++|=.-|-=+|+-++|--.-.++|.+.++-+- |++.- -.-.++..++.-.+-++.+..
T Consensus 23 lE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~---------s~LkR--Enq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 23 LEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY---------SALKR--ENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh---------hhhhh--hhhhHHHHHHHHHHHHHHhhHHHh
Confidence 3444444444445555666777776666666666555442 22211 222333444443333333322
Q ss_pred ----HHHHHHHHHhH----HHHHHHHHHHhhhhhhhhhccCCCCchH
Q 008199 403 ----RIIQLEKQLDA----KQALALEIERLKGSLNVMKHMGDDGDIE 441 (574)
Q Consensus 403 ----ki~~LekqL~~----kQ~LELEi~qLkg~L~VmKhm~~~~d~~ 441 (574)
.+-=||-||.. -..||-||.+++..|+=.-.-....|+.
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~s 138 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVS 138 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 23345666653 4578999999999888655544444443
No 178
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=40.15 E-value=4e+02 Score=26.72 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 008199 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKK 335 (574)
Q Consensus 256 ~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~ 335 (574)
.++++...+.|..-...+......+..++.+|+. .+.-+..-+.++..+++.+-+ +-+.+.++|...|+.-..
T Consensus 60 pqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~----~~~el~k~~~~l~~L~~L~~d---knL~eReeL~~kL~~~~~ 132 (194)
T PF15619_consen 60 PQLLQRHNEEVRVLRERLRKSQEQERELERKLKD----KDEELLKTKDELKHLKKLSED---KNLAEREELQRKLSQLEQ 132 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHc---CCchhHHHHHHHHHHHHH
Confidence 4445555555555555555554444444333333 222233334444444444321 223344555555555555
Q ss_pred HHHHHHHHHH
Q 008199 336 ELELRGEELE 345 (574)
Q Consensus 336 eL~~r~k~L~ 345 (574)
+|+...+.+.
T Consensus 133 ~l~~~~~ki~ 142 (194)
T PF15619_consen 133 KLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 179
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=39.98 E-value=1.6e+02 Score=29.15 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=27.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008199 380 QKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDA 413 (574)
Q Consensus 380 ~kade~vlkLve~hkrEke~~~~ki~~LekqL~~ 413 (574)
++||+=|.-=.=.|.||.|++..+|..||..+..
T Consensus 110 ~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 110 QKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666678999999999999998887765
No 180
>PRK00732 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=39.92 E-value=1.4e+02 Score=27.18 Aligned_cols=69 Identities=20% Similarity=0.366 Sum_probs=43.2
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 230 IIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (574)
Q Consensus 230 ~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ 309 (574)
..|+.|.+- |..+++...+..+....+ +... -.+.++=....+.+.+|+-+++=|.+++++|+| |.+||
T Consensus 33 sF~~~L~~a--l~~vn~~q~~a~~~~~~~---~~G~-----~~l~~vmiA~~kA~lslq~~vqVRNKlveAYqE-IMrMq 101 (102)
T PRK00732 33 SFGALLKDA--MGSVLEAGRKSDAQTAAM---ASGK-----ANLMDVVTAVAETDVAVSTLVSVRDRVIQAYEE-IMRMP 101 (102)
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHHHH---HcCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 466666653 444444444433333222 2221 135666666678899999999999999999985 65554
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.87 E-value=71 Score=33.17 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=30.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 008199 404 IIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELD 461 (574)
Q Consensus 404 i~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~ 461 (574)
+++|..||+ .|..||.+|+|+++++-| .|+.+.+.-.+-..+|+
T Consensus 56 ~~~l~~ql~---~lq~ev~~LrG~~E~~~~-----------~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 56 LTQLQQQLS---DNQSDIDSLRGQIQENQY-----------QLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHH---HHHHHHHHHhhHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 467777776 577899999999999877 34445555444444444
No 182
>PRK10698 phage shock protein PspA; Provisional
Probab=39.84 E-value=4.2e+02 Score=26.92 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 008199 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSY---NEEIKKIQLSARD 314 (574)
Q Consensus 256 ~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~y---neEi~kmQ~~a~~ 314 (574)
+.++....+=+..-+..+.+|+.-+.+.-..+.++|-....+...| ...+.+.+..|.-
T Consensus 16 n~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~ 77 (222)
T PRK10698 16 NALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAEL 77 (222)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666667788888999999999899999998876665544 4455555555543
No 183
>PHA00616 hypothetical protein
Probab=39.60 E-value=10 Score=29.52 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=17.3
Q ss_pred eeeccCCCCCCccccChHHHHhhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHAS 64 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA~ 64 (574)
+|.||-|+.. +-..++|..|-.
T Consensus 1 pYqC~~CG~~---F~~~s~l~~H~r 22 (44)
T PHA00616 1 MYQCLRCGGI---FRKKKEVIEHLL 22 (44)
T ss_pred CCccchhhHH---HhhHHHHHHHHH
Confidence 4899999855 667888988854
No 184
>PRK09343 prefoldin subunit beta; Provisional
Probab=39.25 E-value=3.1e+02 Score=25.24 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHH---------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHH
Q 008199 411 LDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQK---------METVLKDLREKEGELDDLEALNQTLIIRERKSNDEL 481 (574)
Q Consensus 411 L~~kQ~LELEi~qLkg~L~VmKhm~~~~d~~~~~k---------~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdEL 481 (574)
..++|.|+.++..+...+.=+.-++ +|..+.+- .+++..+|.++.+-+ +.--.+|-.++..-...+
T Consensus 27 ~~q~~~le~q~~e~~~~~~EL~~L~--~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i---e~~ik~lekq~~~l~~~l 101 (121)
T PRK09343 27 LQQKSQIDLELREINKALEELEKLP--DDTPIYKIVGNLLVKVDKTKVEKELKERKELL---ELRSRTLEKQEKKLREKL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--CcchhHHHhhHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3467788888888877777777665 45666653 355555555544433 344455555555555666
Q ss_pred HHHHHHHHHHHHhc
Q 008199 482 QDARKELINALKEL 495 (574)
Q Consensus 482 qeARk~LI~~l~~~ 495 (574)
.+.+..|-.-+...
T Consensus 102 ~e~q~~l~~ll~~~ 115 (121)
T PRK09343 102 KELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666555543
No 185
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.69 E-value=13 Score=39.99 Aligned_cols=13 Identities=46% Similarity=1.231 Sum_probs=10.1
Q ss_pred CCeeeccCCCCCC
Q 008199 38 DEAFTCPYCPKKR 50 (574)
Q Consensus 38 ~~~~~CP~C~gkk 50 (574)
--+|.|||||.-.
T Consensus 374 ~~~FKCPYCP~~~ 386 (396)
T COG5109 374 VLSFKCPYCPEMS 386 (396)
T ss_pred cEEeeCCCCCcch
Confidence 3489999999653
No 186
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=37.50 E-value=55 Score=30.82 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=39.7
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCChhhhHhHHH
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~ 190 (574)
.+.|-|++. ..+...|++.|.. |.+ ..+....++ .-+.|++.|.|.+. ..-..|+.
T Consensus 36 ~lfVgnL~~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kGfaFV~F~~~-e~A~~Al~ 94 (144)
T PLN03134 36 KLFIGGLSW---------GTDDASLRDAFAH--FGDVVDAKVIVDRETGRSRGFGFVNFNDE-GAATAAIS 94 (144)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhc--CCCeEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 356889986 4578899999999 766 444444443 34789999999855 55566654
No 187
>smart00400 ZnF_CHCC zinc finger.
Probab=36.49 E-value=49 Score=25.99 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.5
Q ss_pred hhCCCceEeecCCeeeccCCCCCCccccChHHHHhhhhcC
Q 008199 27 LKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGV 66 (574)
Q Consensus 27 Lk~g~~kVk~~~~~~~CP~C~gkkk~~y~~~~LLqHA~gv 66 (574)
=++.++.|+...+.|+|=.|..+ .+.=+|+++-.++
T Consensus 10 d~~pSf~v~~~kn~~~Cf~cg~g----Gd~i~fv~~~~~~ 45 (55)
T smart00400 10 EKTPSFSVSPDKQFFHCFGCGAG----GNVISFLMKYDKL 45 (55)
T ss_pred CCCCCEEEECCCCEEEEeCCCCC----CCHHHHHHHHHCc
Confidence 35677899888899999999633 4678889988775
No 188
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.37 E-value=4.9e+02 Score=26.72 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 008199 291 MEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKEL 337 (574)
Q Consensus 291 meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL 337 (574)
+++-.+|++.|-++|..-...++..+-+++..+..+..+|+......
T Consensus 22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~ 68 (225)
T COG1842 22 AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARA 68 (225)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888888899999999999999999988876666555444333
No 189
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.25 E-value=5.6e+02 Score=27.31 Aligned_cols=7 Identities=43% Similarity=0.278 Sum_probs=3.3
Q ss_pred HHHHHHh
Q 008199 147 LRDELIR 153 (574)
Q Consensus 147 L~~~l~~ 153 (574)
|.+.|..
T Consensus 16 L~~FL~~ 22 (325)
T PF08317_consen 16 LQDFLNM 22 (325)
T ss_pred HHHHHHH
Confidence 4554444
No 190
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=35.94 E-value=1.1e+02 Score=27.36 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=44.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccC-----CCCCceeEEEeeCCChhhhHhHHHHHHHhh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWN-----FRGHSGCAVVEFHKDWPGLHNAMSFEKAYE 196 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~-----~~Gh~g~aIV~F~~dw~Gf~nA~~fe~~Fe 196 (574)
|+.|-|||. -.+-..|.+.+.. ..++...-+|- .....|+|.|-|.+ -..|.+|.+.|.
T Consensus 3 TvMirNIPn---------~~t~~~L~~~l~~--~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~----~~~~~~F~~~f~ 66 (97)
T PF04059_consen 3 TVMIRNIPN---------KYTQEMLIQILDE--HFKGKYDFFYLPIDFKNKCNLGYAFVNFTS----PQAAIRFYKAFN 66 (97)
T ss_pred eEEEecCCC---------CCCHHHHHHHHHH--hccCcceEEEeeeeccCCCceEEEEEEcCC----HHHHHHHHHHHc
Confidence 678999997 3466778887776 45666666763 34578999999976 467889999998
No 191
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=35.64 E-value=8.1e+02 Score=28.96 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 284 SNSVEKLMEEKDRLLQSYNEEIKKIQLSARD 314 (574)
Q Consensus 284 s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~ 314 (574)
+.||..+--|||...+.|+.|....|+..+.
T Consensus 3 ~e~l~qlq~Erd~ya~~lk~e~a~~qqr~~q 33 (617)
T PF15070_consen 3 MESLKQLQAERDQYAQQLKEESAQWQQRMQQ 33 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777666666666665555543
No 192
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=35.63 E-value=6.8e+02 Score=28.11 Aligned_cols=29 Identities=38% Similarity=0.462 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 008199 399 DLHNRIIQLEKQLDAKQALALEIERLKGSLNV 430 (574)
Q Consensus 399 ~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~V 430 (574)
++.++---|+|+|++|+ -|.+||++++.|
T Consensus 353 aLrkerd~L~keLeekk---releql~~q~~v 381 (442)
T PF06637_consen 353 ALRKERDSLAKELEEKK---RELEQLKMQLAV 381 (442)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 33333344555555443 355566665554
No 193
>PRK12728 fliE flagellar hook-basal body protein FliE; Provisional
Probab=35.33 E-value=1.3e+02 Score=27.16 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 271 KHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (574)
Q Consensus 271 ~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ 309 (574)
..+.++=....+.+.+|+-+++=|+++.++|+| |.+||
T Consensus 64 ~~lhevmiA~~kA~lslq~~vqVRNKlv~AYqE-IMrMq 101 (102)
T PRK12728 64 VDLHDVMIAAQKASISLQLTVQIRNKVVEAYQE-IMRMQ 101 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 466667677788899999999999999999995 55554
No 194
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.15 E-value=17 Score=26.08 Aligned_cols=16 Identities=19% Similarity=0.800 Sum_probs=11.5
Q ss_pred cCCeeeccCCCCCCcc
Q 008199 37 SDEAFTCPYCPKKRKQ 52 (574)
Q Consensus 37 ~~~~~~CP~C~gkkk~ 52 (574)
....|.||.|...+..
T Consensus 14 ~~~~~~CP~Cg~~~~~ 29 (33)
T cd00350 14 EEAPWVCPVCGAPKDK 29 (33)
T ss_pred CcCCCcCcCCCCcHHH
Confidence 3478999999765443
No 195
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=34.51 E-value=9.2e+02 Score=29.31 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=20.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008199 239 GDLKTISEMMEEEARKQNLLVSNLTNMIEVKDK 271 (574)
Q Consensus 239 gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~ 271 (574)
.++.|..+...+..+...+++.++...+...++
T Consensus 479 ~~~~~~~~~~~~~~~~l~~llee~~~~~~~~~~ 511 (809)
T KOG0247|consen 479 PDLPTFEEQDKNDKETLDQLLEELEKRILLRTK 511 (809)
T ss_pred CCchhHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666655444433
No 196
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=34.27 E-value=18 Score=28.51 Aligned_cols=10 Identities=30% Similarity=1.022 Sum_probs=8.1
Q ss_pred eccCCCCCCc
Q 008199 42 TCPYCPKKRK 51 (574)
Q Consensus 42 ~CP~C~gkkk 51 (574)
.||||++...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 6999987755
No 197
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.27 E-value=5.2e+02 Score=26.34 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 008199 445 KMETVLKDLREKEGELDDLEALNQTLI 471 (574)
Q Consensus 445 k~~~l~~~L~ek~~el~~~e~lnq~Li 471 (574)
.++..+.++.+....++.++...+.|.
T Consensus 78 ~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 78 QVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 198
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=34.04 E-value=21 Score=33.67 Aligned_cols=13 Identities=46% Similarity=1.081 Sum_probs=10.3
Q ss_pred cCCeeeccCCCCC
Q 008199 37 SDEAFTCPYCPKK 49 (574)
Q Consensus 37 ~~~~~~CP~C~gk 49 (574)
+++.|.||.|++.
T Consensus 120 ~~~~f~Cp~Cg~~ 132 (147)
T smart00531 120 MDGTFTCPRCGEE 132 (147)
T ss_pred CCCcEECCCCCCE
Confidence 3677999999855
No 199
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.97 E-value=8.5e+02 Score=28.75 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 257 LLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARD 314 (574)
Q Consensus 257 ~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~ 314 (574)
.+++.|..++......+.++...|....-.+..+-.+.+.+.....+|+.++......
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~ 345 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLM 345 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777888888888888888888888888888888877665543
No 200
>PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=33.81 E-value=1.5e+02 Score=26.72 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=29.1
Q ss_pred hHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 272 HLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (574)
Q Consensus 272 ~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ 309 (574)
.+.++=....+...+++-+++=|.+++++|+| |..||
T Consensus 60 dlhevmIA~~kA~ls~q~~vqVRNKlveAYqE-IMrMQ 96 (97)
T PRK03907 60 DLHQAAIAIGKAETSMKLMLEVRNKAISAYKE-ILRTQ 96 (97)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 45555566677889999999999999999995 55554
No 201
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.56 E-value=7.9e+02 Score=28.22 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhHHHHHHHHH-----HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 008199 313 RDHFQRIFTDHEKLKLQLES-----QKKELELRGEELEKRETQNENDRKILAEEIE 363 (574)
Q Consensus 313 ~~~~~rI~~e~ekl~~eLe~-----k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~ 363 (574)
.+.+++-.+.+.+|+++|+. .+..+..|.+++..--.+-+.|-.|...|-.
T Consensus 358 ~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etr 413 (521)
T KOG1937|consen 358 DEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETR 413 (521)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444455889999999986 4889999999998766666666555544433
No 202
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=33.37 E-value=8.3e+02 Score=28.46 Aligned_cols=50 Identities=28% Similarity=0.254 Sum_probs=24.6
Q ss_pred HHHHHHHHhHHHH----HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 008199 404 IIQLEKQLDAKQA----LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELD 461 (574)
Q Consensus 404 i~~LekqL~~kQ~----LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~ 461 (574)
+-.|.-||-.+|+ +-.|.+.|..-|+.||-- ...+..-.++|+||+.|..
T Consensus 235 ~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da--------~~ql~aE~~EleDkyAE~m 288 (596)
T KOG4360|consen 235 NSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDA--------QRQLTAELEELEDKYAECM 288 (596)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHH
Confidence 3344444444443 344556666666666532 2233333445555555543
No 203
>TIGR00205 fliE flagellar hook-basal body complex protein FliE. fliE is a component of the flagellar hook-basal body complex located possibly at (MS-ring)-rod junction.
Probab=33.20 E-value=2e+02 Score=26.38 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=31.0
Q ss_pred HhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 270 DKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (574)
Q Consensus 270 n~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ 309 (574)
...+.++=....+...+|+-+++=|.++.++|+| |.+||
T Consensus 70 ~~dlhevmia~~kA~lslq~~vqVRNKlveAYqE-IMrMQ 108 (108)
T TIGR00205 70 SVDLHDVMIAMQKASMSMSILKEVRNKAVKAYQE-IMRMQ 108 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 3466677777788899999999999999999985 54443
No 204
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=33.15 E-value=63 Score=33.60 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=53.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCC-CCcccccccCCCC-CceeEEEeeCCChhhhHhHHHHHHHhhhcC
Q 008199 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGF-NPTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSFEKAYEADH 199 (574)
Q Consensus 122 wmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF-~p~kv~~l~~~~G-h~g~aIV~F~~dw~Gf~nA~~fe~~Fe~~~ 199 (574)
=.++|-|.++ |.....|++-|.. | .+.+|-.-|++.| -.|++-|.|...-.++.--..|+. |..+|
T Consensus 84 ~~v~v~NL~~---------~V~~~Dl~eLF~~--~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG 151 (243)
T KOG0533|consen 84 TKVNVSNLPY---------GVIDADLKELFAE--FGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALDG 151 (243)
T ss_pred ceeeeecCCc---------CcchHHHHHHHHH--hccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccCC
Confidence 3467888887 7788899999999 7 8888888888888 559999999998877777777777 66554
No 205
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=33.04 E-value=19 Score=28.27 Aligned_cols=14 Identities=21% Similarity=0.833 Sum_probs=8.1
Q ss_pred CCeeeccCCCCCCc
Q 008199 38 DEAFTCPYCPKKRK 51 (574)
Q Consensus 38 ~~~~~CP~C~gkkk 51 (574)
...|+||.|...|.
T Consensus 32 p~~w~CP~C~a~K~ 45 (47)
T PF00301_consen 32 PDDWVCPVCGAPKS 45 (47)
T ss_dssp -TT-B-TTTSSBGG
T ss_pred CCCCcCcCCCCccc
Confidence 34599999986654
No 206
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=33.02 E-value=1.6e+02 Score=25.96 Aligned_cols=48 Identities=13% Similarity=0.382 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 008199 259 VSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIK 306 (574)
Q Consensus 259 v~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~ 306 (574)
.+.+..++..-|-.|..||.+..-....|+.+++.+.+....|.++..
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777788888899999999999999999999998888888876643
No 207
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=32.96 E-value=23 Score=28.57 Aligned_cols=19 Identities=26% Similarity=0.803 Sum_probs=12.7
Q ss_pred CCCc-eEeecCCeeeccCCC
Q 008199 29 SGNH-SVKISDEAFTCPYCP 47 (574)
Q Consensus 29 ~g~~-kVk~~~~~~~CP~C~ 47 (574)
+|-+ +.....-+|+||+|.
T Consensus 32 NGla~~~~~~~i~y~C~~Cg 51 (54)
T PF10058_consen 32 NGLAPKEEFEEIQYRCPYCG 51 (54)
T ss_pred hcccccccCCceEEEcCCCC
Confidence 3434 444455689999997
No 208
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.88 E-value=8.7e+02 Score=28.54 Aligned_cols=213 Identities=21% Similarity=0.299 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008199 254 KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYN--EEIKKIQLSARDHFQRIFTDHEKLKLQLE 331 (574)
Q Consensus 254 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yn--eEi~kmQ~~a~~~~~rI~~e~ekl~~eLe 331 (574)
+..+-+..|..+|..-...+.+++........++..+.++.......-. ++-.++...+. .++.+-+.--..|+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~----~lL~d~e~ni~kL~ 400 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTV----ELLPDAEENIAKLQ 400 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcHHHHHHHH
Confidence 5566778888888888888888888888888888888777654433222 11222222222 22222211112222
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 332 SQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQL 411 (574)
Q Consensus 332 ~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL 411 (574)
.. +++....|..++.+=+.-|.-|.++.+......+.-..-+.. . -.+-+.++.+|.+++..+
T Consensus 401 ~~---v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~----------~----~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 401 AL---VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQ----------K----LQEIKELREEIKEIEEEI 463 (594)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHH----------H----HHHHHHHHHHHHHHHHHH
Confidence 22 233344455555555556666655555432221111111100 0 122333444444444444
Q ss_pred hHHHH----HHHHHHHhhhh----------hhhhhccCC--CCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 008199 412 DAKQA----LALEIERLKGS----------LNVMKHMGD--DGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRER 475 (574)
Q Consensus 412 ~~kQ~----LELEi~qLkg~----------L~VmKhm~~--~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker 475 (574)
..|.. |+-+.+.|... |++.|-+.- +|-..|..-+..|+.++..-.+-|+.--...-.||-+.=
T Consensus 464 ~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdA 543 (594)
T PF05667_consen 464 RQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDA 543 (594)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 44432 33344444322 333332221 111222223456666666666666666666666777776
Q ss_pred hcchHHHHHHHH
Q 008199 476 KSNDELQDARKE 487 (574)
Q Consensus 476 ~sNdELqeARk~ 487 (574)
+.++-.+.|=|-
T Consensus 544 KkDe~~rkaYK~ 555 (594)
T PF05667_consen 544 KKDEAARKAYKL 555 (594)
T ss_pred hcCHHHHHHHHH
Confidence 655444444443
No 209
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.76 E-value=9.5e+02 Score=28.92 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008199 248 MEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLK 327 (574)
Q Consensus 248 ~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~ 327 (574)
......+.+.-++-+.+++-.-+..++.+....+..---+++--.+-+...+.-.+.+...++.+--..+.---+..=+.
T Consensus 156 ~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~ 235 (716)
T KOG4593|consen 156 LGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSL 235 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 328 L-QLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQ 406 (574)
Q Consensus 328 ~-eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~ 406 (574)
. ||+........+-.+|.++......-+..+.--++.++ .|..=+-|.|.+.+++-+
T Consensus 236 ~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~----------------------tv~~LqeE~e~Lqskl~~ 293 (716)
T KOG4593|consen 236 SEELEAINKNMKDQLQELEELERALSQLREELATLRENRE----------------------TVGLLQEELEGLQSKLGR 293 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhh
Q 008199 407 LEKQLDAKQALALEIERLKGSLN 429 (574)
Q Consensus 407 LekqL~~kQ~LELEi~qLkg~L~ 429 (574)
|++=-+..--||||...|+.+|+
T Consensus 294 ~~~l~~~~~~LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 294 LEKLQSTLLGLELENEDLLTKLQ 316 (716)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
No 210
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=32.72 E-value=15 Score=44.34 Aligned_cols=196 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 008199 286 SVEKLMEEKDRLLQSYNEEIKKIQLSA-------RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKIL 358 (574)
Q Consensus 286 sL~~~meEk~~l~~~yneEi~kmQ~~a-------~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl 358 (574)
+|++.+++-..-|++--.+|++=+..+ -+..++.-..-+|-+..|+....+|......+.+--+.++.-+++|
T Consensus 106 ~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~l 185 (859)
T PF01576_consen 106 KLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQL 185 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhH
Q ss_pred HHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCC
Q 008199 359 AEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDG 438 (574)
Q Consensus 359 ~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~~~~ 438 (574)
+.+...-..+.....-..-+-...-..+-.=+.+-.++-+.+..++..|.+ .+..|+..++.++..|+.....-.
T Consensus 186 E~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r---~k~~L~~qLeelk~~leeEtr~k~-- 260 (859)
T PF01576_consen 186 EAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQR---EKSSLESQLEELKRQLEEETRAKQ-- 260 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHhHhhhhh--
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHH
Q 008199 439 DIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKEL 488 (574)
Q Consensus 439 d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~L 488 (574)
.+...+..+..++..-.+.+++-..--..|-..-.+.|.||..+|+.+
T Consensus 261 --~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~ 308 (859)
T PF01576_consen 261 --ALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKY 308 (859)
T ss_dssp --------------------------------------------------
T ss_pred --hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH
No 211
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=32.72 E-value=20 Score=28.54 Aligned_cols=11 Identities=27% Similarity=0.914 Sum_probs=7.8
Q ss_pred eeeccCCCCCCc
Q 008199 40 AFTCPYCPKKRK 51 (574)
Q Consensus 40 ~~~CP~C~gkkk 51 (574)
...|||| |.+.
T Consensus 3 LkPCPFC-G~~~ 13 (61)
T PF14354_consen 3 LKPCPFC-GSAD 13 (61)
T ss_pred CcCCCCC-CCcc
Confidence 3579999 6654
No 212
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=32.55 E-value=1.1e+02 Score=32.07 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHhhhhhhhhhcc
Q 008199 393 QKKQKEDLHNRIIQLEKQLDAKQA-LALEIERLKGSLNVMKHM 434 (574)
Q Consensus 393 hkrEke~~~~ki~~LekqL~~kQ~-LELEi~qLkg~L~VmKhm 434 (574)
=+.|.++|..++.+|..++..... |+.|.++|+..|......
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~ 113 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSS 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 357888899999999777776655 999999999999887654
No 213
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=32.49 E-value=3.1e+02 Score=23.27 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 008199 313 RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIE 363 (574)
Q Consensus 313 ~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~ 363 (574)
.+.+++++.+|..|+.-|.----.+-.|+..|..-+...-.+|..+....+
T Consensus 5 ~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~ 55 (68)
T PF11577_consen 5 QQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQ 55 (68)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999888888889999888877776666666544433
No 214
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.15 E-value=8.7e+02 Score=28.33 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=10.0
Q ss_pred HhHHHHHHHHHHHhhhhhh
Q 008199 411 LDAKQALALEIERLKGSLN 429 (574)
Q Consensus 411 L~~kQ~LELEi~qLkg~L~ 429 (574)
++.-+.|+.|+.+|..+|.
T Consensus 397 ~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 397 LKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555554
No 215
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=32.10 E-value=5.7e+02 Score=30.33 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 245 SEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE------KDRLLQSYNEEIKKIQLSARDHFQR 318 (574)
Q Consensus 245 ~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meE------k~~l~~~yneEi~kmQ~~a~~~~~r 318 (574)
.+......++..+-|+-|...|....+.++.+|.......+++.++..+ |..|+++|+.-.+.-+...+++.+|
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~r 153 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKR 153 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456778889999999999999999999999999999998766 5788899999888888888877776
Q ss_pred HHhhhH
Q 008199 319 IFTDHE 324 (574)
Q Consensus 319 I~~e~e 324 (574)
|=.--+
T Consensus 154 l~~~~~ 159 (632)
T PF14817_consen 154 LQGQVE 159 (632)
T ss_pred HHHHHH
Confidence 644433
No 216
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=31.98 E-value=1e+02 Score=33.65 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 008199 440 IEVLQKMETVLKDLREKEGELDDLEALNQT 469 (574)
Q Consensus 440 ~~~~~k~~~l~~~L~ek~~el~~~e~lnq~ 469 (574)
..+..+|+++.+.+.+-++.++.++.-.+.
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 345677888887777777776655544433
No 217
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.87 E-value=6.1e+02 Score=26.46 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=6.0
Q ss_pred HHHHHHHHhhcC
Q 008199 533 ELCSLWEEYLKD 544 (574)
Q Consensus 533 ~lcS~Wq~~l~d 544 (574)
+|.|..+..+++
T Consensus 175 ell~~yeri~~~ 186 (239)
T COG1579 175 ELLSEYERIRKN 186 (239)
T ss_pred HHHHHHHHHHhc
Confidence 345555555543
No 218
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=31.74 E-value=30 Score=37.46 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=21.3
Q ss_pred HhHhHHHHHHhhhCCCceEeecCCeeeccCCCCC
Q 008199 16 MLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKK 49 (574)
Q Consensus 16 i~~y~~k~y~~Lk~g~~kVk~~~~~~~CP~C~gk 49 (574)
|-+..+++|+.-+=+ .+..||||.|..+
T Consensus 266 l~eC~~~f~~~e~L~------g~d~W~CpkC~~k 293 (415)
T COG5533 266 LQECIDRFYEEEKLE------GKDAWRCPKCGRK 293 (415)
T ss_pred HHHHHHHhhhHHhhc------CcccccCchhccc
Confidence 557888888876544 5678999999744
No 219
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=31.48 E-value=1e+03 Score=28.80 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=63.6
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 008199 342 EELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEI 421 (574)
Q Consensus 342 k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi 421 (574)
.+|.-.-|..+.-|++|++..+.. | .--|..-.+.+..|-..|+++-..+-+++..||+.| +.||...
T Consensus 118 e~Lraala~ae~~R~~lEE~~q~E--------L-ee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L---~~le~~r 185 (739)
T PF07111_consen 118 EELRAALAGAEVVRKNLEEGSQRE--------L-EEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSL---ESLETRR 185 (739)
T ss_pred HHHHHHHhhHHHHHHhhHHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 345445567777888887665442 1 111233456677888999999999999999999999 5566666
Q ss_pred HHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhH
Q 008199 422 ERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDL 463 (574)
Q Consensus 422 ~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~ 463 (574)
.+....|.+. .+.-|.|.+.|.-.-++|+.-
T Consensus 186 ~~e~~~La~~-----------q~e~d~L~~qLsk~~~~le~q 216 (739)
T PF07111_consen 186 AGEAKELAEA-----------QREADLLREQLSKTQEELEAQ 216 (739)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHH
Confidence 5555555433 334455666665555555443
No 220
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=31.43 E-value=5.3e+02 Score=25.60 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=9.9
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 008199 375 ASLVQQKADENVRKLAEDQ 393 (574)
Q Consensus 375 A~~Eq~kade~vlkLve~h 393 (574)
|.|-+..|.+-+|+-++..
T Consensus 144 AglT~eEAk~~Ll~~le~e 162 (201)
T PF12072_consen 144 AGLTAEEAKEILLEKLEEE 162 (201)
T ss_pred hCCCHHHHHHHHHHHHHHH
Confidence 4444444555666555553
No 221
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.34 E-value=2.3e+02 Score=23.26 Aligned_cols=25 Identities=48% Similarity=0.648 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 008199 402 NRIIQLEKQLDAKQALALEIERLKGSLN 429 (574)
Q Consensus 402 ~ki~~LekqL~~kQ~LELEi~qLkg~L~ 429 (574)
+.|..|+++|. +|+-+|+.+.++|.
T Consensus 4 ~E~~rL~Kel~---kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 4 AEIERLEKELE---KLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHc
Confidence 45667777775 78888999999987
No 222
>PRK01156 chromosome segregation protein; Provisional
Probab=31.31 E-value=1e+03 Score=28.75 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=6.8
Q ss_pred CCcccccCchhHHHHH
Q 008199 136 DGRSVGESGSKLRDEL 151 (574)
Q Consensus 136 dg~~~G~s~~~L~~~l 151 (574)
||.++..+...+.+.+
T Consensus 102 ~g~~~~~~~~~~~~~i 117 (895)
T PRK01156 102 DGSIIAEGFDDTTKYI 117 (895)
T ss_pred CCeeccccHHHHHHHH
Confidence 4554433333444433
No 223
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.10 E-value=7.8e+02 Score=27.42 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 008199 306 KKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEI 362 (574)
Q Consensus 306 ~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~ 362 (574)
+.||..|--.....-..|.||-..||+-+..--.-..+=+.+.+.-+-+|..|++.+
T Consensus 99 KnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQi 155 (561)
T KOG1103|consen 99 KNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQI 155 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHH
Confidence 345555555555555555666666665554444444455566666666666665443
No 224
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=30.87 E-value=1.1e+03 Score=29.19 Aligned_cols=60 Identities=23% Similarity=0.250 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHhc--cCCcccceeecCCCCchHHHHHHHhhcChhhHHHHHHHHHHHHHHhhcCCC
Q 008199 479 DELQDARKELINALKEL--SGRAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPD 546 (574)
Q Consensus 479 dELqeARk~LI~~l~~~--~~~~~IgiKrmGeLd~kpF~~ack~k~~~~~~~~~a~~lcS~Wq~~l~dp~ 546 (574)
+.|-.++..-|+.|.+- .-.++.++ |-+++-.|+.-- .+.+-.-+..+-..|-.+|-|+.
T Consensus 588 ~il~~~~~~~~q~lq~al~~ld~P~~~---~~~~~p~~Llst-----~~~~s~n~~~~e~~~~~yla~~~ 649 (980)
T KOG0980|consen 588 PILDGSLASGIQALQNALYQLDSPLHW---RCLTSPDFLLST-----AENASVNATQFETSFNNYLADGD 649 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccc---CcCCCHHHHHHH-----HHHHHHHHHHHHHHHhhhcCCch
Confidence 33333333344444332 23445555 555555565543 23455556666666777777664
No 225
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=30.48 E-value=21 Score=30.95 Aligned_cols=14 Identities=29% Similarity=0.952 Sum_probs=4.8
Q ss_pred ecCCeeeccCCCCC
Q 008199 36 ISDEAFTCPYCPKK 49 (574)
Q Consensus 36 ~~~~~~~CP~C~gk 49 (574)
.....|.||||...
T Consensus 18 ~l~~~F~CPfC~~~ 31 (81)
T PF05129_consen 18 KLPKVFDCPFCNHE 31 (81)
T ss_dssp --SS----TTT--S
T ss_pred CCCceEcCCcCCCC
Confidence 35689999999733
No 226
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.91 E-value=6.3e+02 Score=25.95 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=4.9
Q ss_pred chHHHHH
Q 008199 478 NDELQDA 484 (574)
Q Consensus 478 NdELqeA 484 (574)
++|||||
T Consensus 142 a~EiQE~ 148 (218)
T KOG1655|consen 142 ADEIQEV 148 (218)
T ss_pred HHHHHHH
Confidence 4677776
No 227
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.91 E-value=3e+02 Score=28.42 Aligned_cols=46 Identities=26% Similarity=0.445 Sum_probs=23.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHhh
Q 008199 315 HFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNE---NDRKILAEEIEKNAM 367 (574)
Q Consensus 315 ~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~---~er~kl~~e~~kn~~ 367 (574)
...+||.+.++-|.+| +.|..+=.+++.+.+ .+++|.+.|-++|=.
T Consensus 162 ~~mklfae~erkRk~~-------e~r~~~eRkr~re~eIeaeek~Kr~~E~qKnfE 210 (250)
T KOG1150|consen 162 QVMKLFAELERKRKEL-------EARANEERKRQREEEIEAEEKRKREREWQKNFE 210 (250)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444 444444444333332 256677777777643
No 228
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=29.90 E-value=1.1e+03 Score=29.00 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008199 386 VRKLAEDQKKQKEDLHNRIIQLEKQLD 412 (574)
Q Consensus 386 vlkLve~hkrEke~~~~ki~~LekqL~ 412 (574)
.-+-+++..+|+.++-.++..++|.+|
T Consensus 668 ~~~q~eel~Ke~kElq~rL~~q~KkiD 694 (988)
T KOG2072|consen 668 KARQIEELEKERKELQSRLQYQEKKID 694 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334556666777777777777776665
No 229
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.87 E-value=17 Score=42.57 Aligned_cols=103 Identities=25% Similarity=0.323 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHH---HHHHHHhhhHHHHHHHHHHHHHHH
Q 008199 322 DHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQL---ASLVQQKADENVRKLAEDQKKQKE 398 (574)
Q Consensus 322 e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~l---A~~Eq~kade~vlkLve~hkrEke 398 (574)
+...|+.||+ .|..+..+++++++.-+.-|+||++ ..-=..+...|.- .-+++...-|+-++-+..-+.+-+
T Consensus 292 ~a~~LrDElD----~lR~~a~r~~klE~~ve~YKkKLed-~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle 366 (713)
T PF05622_consen 292 EARALRDELD----ELREKADRADKLENEVEKYKKKLED-LEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLE 366 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444443 4445566677777777777777742 1111111111111 111222222333333333444555
Q ss_pred HHHHHHHHHHHHHhHH----HHHHHHHHHhhhhhh
Q 008199 399 DLHNRIIQLEKQLDAK----QALALEIERLKGSLN 429 (574)
Q Consensus 399 ~~~~ki~~LekqL~~k----Q~LELEi~qLkg~L~ 429 (574)
.+-..|.+|+.+|+.. ..|+.|+.+|+.++.
T Consensus 367 ~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~ 401 (713)
T PF05622_consen 367 EYKKQIQELEQKLSEESRRADKLEFENKQLEEKLE 401 (713)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666665543 235555555555544
No 230
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=29.79 E-value=5.9e+02 Score=26.86 Aligned_cols=103 Identities=22% Similarity=0.325 Sum_probs=49.4
Q ss_pred CCceeeecceEEEeeccccccCC-CcccccCc---hhHHHHHHhcCCC-Ccccccc----cCCCCCceeEEEeeCCChhh
Q 008199 114 HDEKFVWPWTGIVVNIPTRRAED-GRSVGESG---SKLRDELIRRGFN-PTRVHPL----WNFRGHSGCAVVEFHKDWPG 184 (574)
Q Consensus 114 ~de~iVWPwmgIi~N~~t~e~~d-g~~~G~s~---~~L~~~l~~~GF~-p~kv~~l----~~~~Gh~g~aIV~F~~dw~G 184 (574)
+.=.+.||=-||=..++. .... ...||+=- +-=+.+|...|.. |.++..+ --+-|++-. +++|++-
T Consensus 43 rGl~yFWPapv~q~~~~~-pgegaktvvGe~y~~esvPr~~L~~agmplPe~~~~~~TRlliK~gNRel----yGsDF~~ 117 (289)
T COG4985 43 RGLTYFWPAPVLQWQTPD-PGEGAKTVVGELYARESVPRSHLKEAGMPLPEKVQAAATRLLIKVGNREL----YGSDFIA 117 (289)
T ss_pred cccccccCchheeeeccC-CCccchhhHHHHHHhhcccHHHHHHcCCCCCCchHHHHHHHHHHhcchhh----ccchHHH
Confidence 455678998888776663 1111 12233210 0113346666654 3332221 112222211 3445444
Q ss_pred hHhHHHHHHHhhhcCCChhhhhhhccCCCcceeeeeccCCCC
Q 008199 185 LHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYN 226 (574)
Q Consensus 185 f~nA~~fe~~Fe~~~~GKkdW~~~~~~~~~LYGwvAradD~~ 226 (574)
+ +.|+-.|..--.|-..-. |.+++.+||++++-+|-.
T Consensus 118 l---le~~~q~~~~P~gl~vle--R~~~G~~yG~ll~~~~ng 154 (289)
T COG4985 118 L---LEFETQFKGAPQGLAVLE--RSRGGQLYGKLLRFDSNG 154 (289)
T ss_pred H---HHHHHHhhcCcchheeee--eccCcchhhheeeeccCC
Confidence 3 335555554333322222 344789999999987753
No 231
>PF02049 FliE: Flagellar hook-basal body complex protein FliE; InterPro: IPR001624 Four genes from the major Bacillus subtilis chemotaxis locus have been shown to encode proteins that are similar to the Salmonella typhimurium FlgB, FlgC, FlgG and FliF proteins; a further gene product is similar to the Escherichia coli FliE protein []. All of these proteins are thought to form part of the hook-basal body complex of the bacterial flagella []. The FlgB, FlgC and FlgG proteins are components of the proximal and distal rods; FliF forms the M-ring that anchors the rod assembly to the membrane; but the role of FliE has not yet been determined []. The similarity between the proteins in these two organisms suggests that the structures of the M-ring and the rod may be similar []. Nevertheless, some differences in size and amino acid composition between some of the homologues suggest the basal body proteins may be organised slightly differently within B. subtilis []. From gel electrophoresis and autoradiography of 35S-labelled S. typhimurium hook-basal body complexes and the deduced number of sulphur-containing residues in FliE, the stoichiometry of the protein in the hook-basal body complex has been estimated to be about nine subunits []. FliE does not undergo cleavage of a signal peptide, nor does it show any similarity to the axial components like the rod or hook proteins, which are thought to be exported by the flagellum-specific export pathway []. On this evidence, it has been suggested that FliE may be in the vicinity of the MS ring, perhaps acting as an adaptor protein between ring and rod substructures [].; GO: 0003774 motor activity, 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum
Probab=29.69 E-value=1.8e+02 Score=25.64 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 271 KHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (574)
Q Consensus 271 ~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ 309 (574)
..+-++=....+...+|+-+++=|+++.++|+| |.+||
T Consensus 58 ~dl~~vmia~~kA~lslq~~vqVRnK~v~AYqE-ImrMq 95 (96)
T PF02049_consen 58 VDLHEVMIAMQKASLSLQLAVQVRNKAVEAYQE-IMRMQ 95 (96)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 555566666677889999999999999999985 55554
No 232
>PRK00790 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=29.01 E-value=1.7e+02 Score=27.01 Aligned_cols=37 Identities=14% Similarity=0.380 Sum_probs=30.3
Q ss_pred hHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 272 HLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (574)
Q Consensus 272 ~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ 309 (574)
.+.++=....+...+|+-+++=|+++.++|+| |.+||
T Consensus 72 dlhevmiA~~kA~lslq~~vqVRNKlVeAYqE-IMrMq 108 (109)
T PRK00790 72 DTREVVDAVMQAEQALQTAVAIRDKVVEAYLE-ILRMP 108 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 46677777778889999999999999999995 55554
No 233
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=28.97 E-value=4.1e+02 Score=25.21 Aligned_cols=45 Identities=31% Similarity=0.469 Sum_probs=35.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 008199 315 HFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILA 359 (574)
Q Consensus 315 ~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~ 359 (574)
.+..+++.+..|..+|..-.+-|+.-.+++++.++..+.+-..|+
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~ 65 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQ 65 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778888888888888888888888888888888877775
No 234
>PRK01699 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=28.88 E-value=84 Score=28.41 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=30.0
Q ss_pred hHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 272 HLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (574)
Q Consensus 272 ~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ 309 (574)
.+-++=....+...+|+-+++=|.+++++|+| |..||
T Consensus 62 ~lhevmiA~~kA~lslq~~vqVRNK~veAYqE-ImrMq 98 (99)
T PRK01699 62 ETHDVLIQQKKAESQMKTAALVRDNLIENYKS-LINMQ 98 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 56666666778899999999999999999985 55554
No 235
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=28.53 E-value=2.5e+02 Score=25.41 Aligned_cols=84 Identities=31% Similarity=0.459 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008199 320 FTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKED 399 (574)
Q Consensus 320 ~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~ 399 (574)
+.+-...+..++..+..++.-..+|-. .|.+|--+ .|..-+++...
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTa----------sLFeEAN~------------------------MVa~ar~e~~~ 48 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTA----------SLFEEANK------------------------MVADARRERAA 48 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH------------------------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHH----HHHHHHHHhhhhhhhhhccCCCCch
Q 008199 400 LHNRIIQLEKQLDAKQ----ALALEIERLKGSLNVMKHMGDDGDI 440 (574)
Q Consensus 400 ~~~ki~~LekqL~~kQ----~LELEi~qLkg~L~VmKhm~~~~d~ 440 (574)
+..+..+|+++|..+. .|..++..||- ||.+|..+.+.
T Consensus 49 ~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~---v~~~~~~~~~~ 90 (100)
T PF06428_consen 49 LEEKNEQLEKQLKEKEALLESLQAQLKELKT---VMESMESESDD 90 (100)
T ss_dssp HHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH---CTTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHccccccc
No 236
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=28.51 E-value=1e+02 Score=29.03 Aligned_cols=61 Identities=25% Similarity=0.307 Sum_probs=44.8
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhhhHhHHHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMSFE 192 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~--~Gh~g~aIV~F~~dw~Gf~nA~~fe 192 (574)
+.++.|-|++. ..+...|.+.|.. |.+. .++..+.. .-.+|++.|.|...-....--..+.
T Consensus 115 ~~~l~v~nL~~---------~~~~~~l~~~F~~--~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~ 178 (306)
T COG0724 115 NNTLFVGNLPY---------DVTEEDLRELFKK--FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN 178 (306)
T ss_pred CceEEEeCCCC---------CCCHHHHHHHHHh--cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC
Confidence 67888999996 4477899999999 8776 55665653 4688999999998765544333333
No 237
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=28.35 E-value=1.1e+03 Score=28.40 Aligned_cols=143 Identities=21% Similarity=0.301 Sum_probs=85.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------HH
Q 008199 281 TETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQN-------EN 353 (574)
Q Consensus 281 ~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~-------~~ 353 (574)
.+....|.+.+.-+..+-++-..|+...|+.-.......-..|..--..|.++..+|+-.-+.|+-+.+.- -.
T Consensus 118 e~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~ 197 (739)
T PF07111_consen 118 EELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQR 197 (739)
T ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777778888888888888888888888888888888777777777777766444443222111 11
Q ss_pred HHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 008199 354 DRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQ----------KKQKEDLHNRIIQLEKQLDAKQALALEIER 423 (574)
Q Consensus 354 er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~h----------krEke~~~~ki~~LekqL~~kQ~LELEi~q 423 (574)
++.-|.++.-+. ..--..+.+.+++ +-+.|-++ ..|++.+.+.+..|++.-+ .|-..++=
T Consensus 198 e~d~L~~qLsk~-~~~le~q~tlv~~------LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~---~L~~T~EL 267 (739)
T PF07111_consen 198 EADLLREQLSKT-QEELEAQVTLVEQ------LRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRD---ALQATAEL 267 (739)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHH------HHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 222233222221 1111122333333 33344333 4899999999999997655 55566665
Q ss_pred hhhhhhhhhc
Q 008199 424 LKGSLNVMKH 433 (574)
Q Consensus 424 Lkg~L~VmKh 433 (574)
|.=.++-+.|
T Consensus 268 LqVRvqSLt~ 277 (739)
T PF07111_consen 268 LQVRVQSLTD 277 (739)
T ss_pred HHHHHHHHHH
Confidence 6655555444
No 238
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=28.29 E-value=6e+02 Score=25.22 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 008199 325 KLKLQLESQKKELELRGEELEKRETQNENDRKIL 358 (574)
Q Consensus 325 kl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl 358 (574)
.+...|..+...|+.+...|++++..-+..+..|
T Consensus 82 ~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l 115 (201)
T PF12072_consen 82 RLEKRLQQREEQLDRRLEQLEKREEELEKKEEEL 115 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444344443
No 239
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=27.99 E-value=1e+03 Score=27.77 Aligned_cols=98 Identities=26% Similarity=0.373 Sum_probs=55.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHhhhh--------chhHHHHHHHHhh
Q 008199 319 IFTDHEKLKLQLESQKKELELRGEELEKRE--------TQNENDRKILAEEIEKNAMRN--------NSLQLASLVQQKA 382 (574)
Q Consensus 319 I~~e~ekl~~eLe~k~~eL~~r~k~L~k~~--------~~~~~er~kl~~e~~kn~~~~--------~~l~lA~~Eq~ka 382 (574)
.|.+.-|-...+-+++.|+++-.+-|.|+. +.+++--.+-..-+--|-..| ..|++|.--.
T Consensus 331 AFqnl~KqqE~iN~qReeIerqrklLaKRKPp~~gkvqap~~~ne~kqrkskntNGaenifrrpeep~~ltlaEYhE--- 407 (775)
T KOG1151|consen 331 AFQNLIKQQERINSQREEIERQRKLLAKRKPPAMGKVQAPPATNEQKQRKSKNTNGAENIFRRPEEPETLTLAEYHE--- 407 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCCCCCccccccccccCCCcccccccCCCCcccccHHHHHh---
Confidence 356666777788899999999999888763 332221111100111122333 5677776532
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 008199 383 DENVRKLAEDQ-KKQKEDLHNRIIQLEKQLDAKQALALEIERLK 425 (574)
Q Consensus 383 de~vlkLve~h-krEke~~~~ki~~LekqL~~kQ~LELEi~qLk 425 (574)
.|++.||--.| ++|--++...+..||+.- .|-|.+||
T Consensus 408 qeEIfKLRlgHLkKEEaeiqaElERLErvr------nlHiRELK 445 (775)
T KOG1151|consen 408 QEEIFKLRLGHLKKEEAEIQAELERLERVR------NLHIRELK 445 (775)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 36788887777 444445556666665532 34455555
No 240
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=27.86 E-value=1.3e+02 Score=22.41 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=34.7
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC-CCceeEEEeeCCChhhhHhHH
Q 008199 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR-GHSGCAVVEFHKDWPGLHNAM 189 (574)
Q Consensus 124 gIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-Gh~g~aIV~F~~dw~Gf~nA~ 189 (574)
+.|-|.|. ..+..++++.|+. |.+ ..+...+.+. ...|++.|.|.+. ..-..|.
T Consensus 2 i~i~~l~~---------~~~~~~i~~~~~~--~g~i~~~~~~~~~~~~~~~~~~v~f~s~-~~a~~a~ 57 (74)
T cd00590 2 LFVGNLPP---------DVTEEDLRELFSK--FGKVESVRIVRDKDTKSKGFAFVEFEDE-EDAEKAL 57 (74)
T ss_pred EEEeCCCC---------ccCHHHHHHHHHh--cCCEEEEEEeeCCCCCcceEEEEEECCH-HHHHHHH
Confidence 45667764 3567899999988 643 4444444433 3588999999865 3444443
No 241
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.83 E-value=3.7e+02 Score=22.68 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 008199 312 ARDHFQRIFTDHEKLKLQLESQKKELELR 340 (574)
Q Consensus 312 a~~~~~rI~~e~ekl~~eLe~k~~eL~~r 340 (574)
|-.....-+.++.+|+.++++-.++|+..
T Consensus 38 ~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 38 AERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445566677777777777766543
No 242
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=27.76 E-value=9e+02 Score=29.13 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 008199 285 NSVEKLMEEKDRLL 298 (574)
Q Consensus 285 ~sL~~~meEk~~l~ 298 (574)
-.+++.|+|+.++-
T Consensus 250 KQ~rk~meEreK~R 263 (811)
T KOG4364|consen 250 KQLRKNMEEREKER 263 (811)
T ss_pred HHHHHhHHHHHHHH
Confidence 34455666655443
No 243
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=27.66 E-value=9.5e+02 Score=27.33 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHH
Q 008199 417 LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQ 482 (574)
Q Consensus 417 LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELq 482 (574)
-+-||++|+-.|.+--+.. .-.++-+.+..|.+-|-.|-..|+.+-.-+++|.+.--+.-..|+
T Consensus 367 ke~E~q~lr~~l~~~~~~s--~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 367 KESEIQKLRNQLSARASSS--SWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHHHHHHHHhccC--CcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 3788899988777754333 345778899999999999999999998888888875444444443
No 244
>PTZ00491 major vault protein; Provisional
Probab=27.64 E-value=9.6e+02 Score=29.53 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=15.3
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhc
Q 008199 411 LDAKQALALEIERLKGSLNVMKH 433 (574)
Q Consensus 411 L~~kQ~LELEi~qLkg~L~VmKh 433 (574)
|.++|.+||+-.+-+-.|+|.|.
T Consensus 757 ~~~~~~~e~~~~~~~~~le~~k~ 779 (850)
T PTZ00491 757 LRKRQELELEYEQAQNELEIAKA 779 (850)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34566777777776677776654
No 245
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=27.62 E-value=30 Score=22.48 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=10.3
Q ss_pred eeccCCCCCCccccChHHHHhhh
Q 008199 41 FTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 41 ~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
|+||+|+=.. ....|..|-
T Consensus 1 y~C~~C~y~t----~~~~l~~H~ 19 (24)
T PF13909_consen 1 YKCPHCSYST----SKSNLKRHL 19 (24)
T ss_dssp EE-SSSS-EE----SHHHHHHHH
T ss_pred CCCCCCCCcC----CHHHHHHHH
Confidence 7899998221 244566663
No 246
>PTZ00464 SNF-7-like protein; Provisional
Probab=27.57 E-value=6.7e+02 Score=25.52 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008199 330 LESQKKELELRGEELEKRETQ 350 (574)
Q Consensus 330 Le~k~~eL~~r~k~L~k~~~~ 350 (574)
+......|+.|...|+++...
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ 36 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINK 36 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666665543
No 247
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=27.35 E-value=77 Score=36.68 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=40.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCC
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~ 180 (574)
-|-.||-|.|- .. ....|+-.|+..|+-..-+.|--...+-+||+.|.|-.
T Consensus 117 k~rLIIRNLPf-~~--------k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~ 167 (678)
T KOG0127|consen 117 KWRLIIRNLPF-KC--------KKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKE 167 (678)
T ss_pred cceEEeecCCc-cc--------CcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEee
Confidence 79999999996 22 23478999999888777778866666788999999975
No 248
>PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=27.20 E-value=4e+02 Score=24.34 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=29.6
Q ss_pred hHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 272 HLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (574)
Q Consensus 272 ~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ 309 (574)
.+-++=....+...+|+-+++=|.++.++|+| |.+||
T Consensus 71 ~lhevmia~~kA~lslq~~~qVRNKlv~AYqE-IMrMq 107 (108)
T PRK00253 71 SLNDVMIALQKASVSFQAGIQVRNKLVAAYQE-IMNMQ 107 (108)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 55566666778889999999999999999995 55554
No 249
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=26.94 E-value=1e+03 Score=27.54 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHH---HHHHHH-HHHH---HHHHHHHHHHHHHHHHHHH
Q 008199 245 SEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVE---KLMEEK-DRLL---QSYNEEIKKIQLSARDHFQ 317 (574)
Q Consensus 245 ~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~---~~meEk-~~l~---~~yneEi~kmQ~~a~~~~~ 317 (574)
+..++|-.+--++++..+.++|+.+......|+.++.+. +++. +++++| +.|. ..|..=+..|.++.++..-
T Consensus 252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g 330 (622)
T COG5185 252 EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG 330 (622)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch
Confidence 345567777889999999999999999999998888664 2222 222333 1121 1233334555566555443
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008199 318 RIFTDHEKLKLQLESQKKELELRGEELEKRE 348 (574)
Q Consensus 318 rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~ 348 (574)
-.++|+.+++-+-.+|.+-..+.+.+-
T Consensus 331 ----~l~kl~~eie~kEeei~~L~~~~d~L~ 357 (622)
T COG5185 331 ----KLEKLKSEIELKEEEIKALQSNIDELH 357 (622)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345677777766666665554444443
No 250
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.72 E-value=6.8e+02 Score=25.33 Aligned_cols=123 Identities=19% Similarity=0.155 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH-HHHHHHHhhhhchhHHHHHHHHh
Q 008199 303 EEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKIL-AEEIEKNAMRNNSLQLASLVQQK 381 (574)
Q Consensus 303 eEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl-~~e~~kn~~~~~~l~lA~~Eq~k 381 (574)
++..+....+..++.++-.....+-..|+.-++..+.+|++++........-+... ..+.+|. ..-+..|...-.+
T Consensus 95 ~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~---~~K~~k~~~~~~~ 171 (239)
T cd07647 95 EKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKL---KKKAAQCKTSAEE 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH---HHHHHHHHHHHHH
Confidence 33333344444555555555566667777788888888888876432211100000 0111111 1234455556666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhhhhhhhh
Q 008199 382 ADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALE-IERLKGSLNVM 431 (574)
Q Consensus 382 ade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELE-i~qLkg~L~Vm 431 (574)
++.+....|+...+=.......+... ++.=|.||-+ |..|+..|.+=
T Consensus 172 a~~~Y~~~v~~l~~~~~~~~~~~~~~---~~~~Q~lEe~Ri~~lk~~l~~y 219 (239)
T cd07647 172 ADSAYKSSIGCLEDARVEWESEHATA---CQVFQNMEEERIKFLRNALWVH 219 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666655444443333332 2223555543 56666666543
No 251
>PLN03188 kinesin-12 family protein; Provisional
Probab=26.70 E-value=1.4e+03 Score=29.60 Aligned_cols=111 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhchHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--
Q 008199 271 KHLEEMKERFTETSNSVEKLMEEK----------------DRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLES-- 332 (574)
Q Consensus 271 ~~l~elE~k~~e~s~sL~~~meEk----------------~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~-- 332 (574)
.|-.+||++|+..-..-+++||=. -+-+.+...||.-+.--=.+.-+-.-++|..|+.||-.
T Consensus 1114 e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdta 1193 (1320)
T PLN03188 1114 EQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTA 1193 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Q ss_pred -----------HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhh
Q 008199 333 -----------QKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKA 382 (574)
Q Consensus 333 -----------k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~ka 382 (574)
+.+|-+.-.---+++....++|-.++..+++| -++.....+-++.|.-|
T Consensus 1194 eav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~k-lkrkh~~e~~t~~q~~a 1253 (1320)
T PLN03188 1194 EAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDK-LKRKHENEISTLNQLVA 1253 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
No 252
>PLN02678 seryl-tRNA synthetase
Probab=26.65 E-value=3.9e+02 Score=30.18 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=33.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHhc-cCCcccc--------eeecC
Q 008199 437 DGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL-SGRAHIG--------LKRMG 507 (574)
Q Consensus 437 ~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI~~l~~~-~~~~~Ig--------iKrmG 507 (574)
++-++++.++.+|.+++...+.++ +++++...++...|.++ ....+|| |++-|
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~------------------~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g 132 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEV------------------QEAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWG 132 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEc
Confidence 344566777777777777666665 35555556666677666 3333333 67777
Q ss_pred C
Q 008199 508 E 508 (574)
Q Consensus 508 e 508 (574)
.
T Consensus 133 ~ 133 (448)
T PLN02678 133 E 133 (448)
T ss_pred C
Confidence 4
No 253
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=26.61 E-value=1.1e+02 Score=29.73 Aligned_cols=60 Identities=12% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 008199 276 MKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKK 335 (574)
Q Consensus 276 lE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~ 335 (574)
++........+|.++.++-.+-|..-.+...+++.....-++-++.+.+|+-.+|...+.
T Consensus 61 ~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~ 120 (155)
T PF07464_consen 61 AEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSE 120 (155)
T ss_dssp HHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666655444455555556666666666777777777777666665543
No 254
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.21 E-value=5.9e+02 Score=24.45 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHhhhhchhHH
Q 008199 313 RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQ---NENDRKILAEEIEKNAMRNNSLQL 374 (574)
Q Consensus 313 ~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~---~~~er~kl~~e~~kn~~~~~~l~l 374 (574)
......++-+++..+.+++.-..+|..=...|..+... --.++..|..+.++...+.+.|..
T Consensus 37 q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 37 QENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443333333333333322221 124666776666666555555554
No 255
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.16 E-value=6.5e+02 Score=24.90 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 008199 443 LQKMETVLKDLREKEGELDDLEALNQTLI 471 (574)
Q Consensus 443 ~~k~~~l~~~L~ek~~el~~~e~lnq~Li 471 (574)
..+++.|..++.....++..++.=.++|+
T Consensus 117 ~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 117 QKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555556665
No 256
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=26.05 E-value=92 Score=24.41 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=18.6
Q ss_pred hhchHHHHHHHHH---HHHHHHHHHHH
Q 008199 281 TETSNSVEKLMEE---KDRLLQSYNEE 304 (574)
Q Consensus 281 ~e~s~sL~~~meE---k~~l~~~yneE 304 (574)
+.+|.|++++|+| |..+..+||++
T Consensus 4 D~iT~SM~~ai~eT~rRR~~Q~~yN~~ 30 (44)
T PF12344_consen 4 DKITDSMQKAIDETNRRREIQIAYNKE 30 (44)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999988 68899999986
No 257
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.71 E-value=2.6e+02 Score=25.23 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=31.4
Q ss_pred hhhccCCCCc-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 008199 430 VMKHMGDDGD-IEVLQKMETVLKDLREKEGELDDLEALNQTLIIR 473 (574)
Q Consensus 430 VmKhm~~~~d-~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~k 473 (574)
.++|||+.+| ..+.-.|.+++.++..-...++.++....-|+-+
T Consensus 57 ~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 57 KLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888555 5666678888888888888887777777666643
No 258
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=25.67 E-value=44 Score=22.67 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=15.2
Q ss_pred eeeccCCCCCCccccChHHHHhhh
Q 008199 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (574)
Q Consensus 40 ~~~CP~C~gkkk~~y~~~~LLqHA 63 (574)
...||.|+++ +....|..|.
T Consensus 2 l~~C~~CgR~----F~~~~l~~H~ 21 (25)
T PF13913_consen 2 LVPCPICGRK----FNPDRLEKHE 21 (25)
T ss_pred CCcCCCCCCE----ECHHHHHHHH
Confidence 4679999866 6777787774
No 259
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=25.28 E-value=1.7e+02 Score=31.13 Aligned_cols=44 Identities=34% Similarity=0.290 Sum_probs=32.9
Q ss_pred chhHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhH
Q 008199 370 NSLQLASLVQQKADENVRKLAEDQKKQK----EDLHNRIIQLEKQLDA 413 (574)
Q Consensus 370 ~~l~lA~~Eq~kade~vlkLve~hkrEk----e~~~~ki~~LekqL~~ 413 (574)
.+..-|+-.+.-+--.|++.+|+||-|- +.+.++|.+||++--.
T Consensus 234 ~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~l~kri~~Lek~~~~ 281 (290)
T PF07899_consen 234 EAQNEANEKELAALKSVIKCIEEHKLESEFPLEPLQKRIEQLEKQKAD 281 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHH
Confidence 3444555666667778999999999554 5588899999998733
No 260
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.25 E-value=7.7e+02 Score=25.45 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008199 296 RLLQSYNEEIKKIQLSARDHF 316 (574)
Q Consensus 296 ~l~~~yneEi~kmQ~~a~~~~ 316 (574)
+.+..|..||..+.+-=..|+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~ 52 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHV 52 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333
No 261
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=25.22 E-value=4.1e+02 Score=26.73 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=36.4
Q ss_pred CcceeeeeccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008199 213 SGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMK 277 (574)
Q Consensus 213 ~~LYGwvAradD~~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE 277 (574)
+.+|+-.|..|.+.-..++.+|+|--| ||.++... ..+.-....++...+.++...+..|+
T Consensus 83 ~~~~~~qa~~d~~~l~e~L~eY~r~i~---svk~~f~~-R~~a~~~~q~a~~~l~kkr~~~~Kl~ 143 (224)
T cd07623 83 EQLHGEQADTDFYILAELLKDYIGLIG---AIKDVFHE-RVKVWQNWQNAQQTLTKKREAKAKLE 143 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888877788888887554 44444433 22333344455555555555544443
No 262
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.19 E-value=7.3e+02 Score=25.14 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=8.9
Q ss_pred hhhhhccCCCcceeeeec
Q 008199 204 DWYASNQEKSGLYAWVAR 221 (574)
Q Consensus 204 dW~~~~~~~~~LYGwvAr 221 (574)
+|...+..+ .-=|||+.
T Consensus 66 ~w~~Vr~~~-G~~GWV~~ 82 (206)
T PRK10884 66 NYAQIRDSK-GRTAWIPL 82 (206)
T ss_pred CEEEEEeCC-CCEEeEEH
Confidence 566554322 22399854
No 263
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=25.10 E-value=1.6e+03 Score=29.09 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=35.5
Q ss_pred HHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHH
Q 008199 267 EVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKK---IQLSARDHFQRIFTDHEKLKL 328 (574)
Q Consensus 267 ~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~k---mQ~~a~~~~~rI~~e~ekl~~ 328 (574)
...+..+..+-.+..+....+...-.+.+...++|.+++.+ -+..|.+....|..-+..|+.
T Consensus 888 ~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~ 952 (1294)
T KOG0962|consen 888 EELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQ 952 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444567778888888877 577777777777666655543
No 264
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=25.08 E-value=1.1e+02 Score=31.86 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=35.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC-C-CceeEEEeeCCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR-G-HSGCAVVEFHKD 181 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~-G-h~g~aIV~F~~d 181 (574)
.+.|-|+|. ..+..+|++.|+. |.| ..|+.+.++. | +.|++.|.|...
T Consensus 5 ~l~V~nLp~---------~~~e~~l~~~F~~--~G~i~~v~i~~d~~~g~s~g~afV~f~~~ 55 (352)
T TIGR01661 5 NLIVNYLPQ---------TMTQEEIRSLFTS--IGEIESCKLVRDKVTGQSLGYGFVNYVRP 55 (352)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHc--cCCEEEEEEEEcCCCCccceEEEEEECcH
Confidence 356788886 4577899999999 776 4566666543 3 779999999764
No 265
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=24.71 E-value=1.3e+03 Score=27.92 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH
Q 008199 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM 291 (574)
Q Consensus 256 ~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~m 291 (574)
.+.|+-|-.++..|...++.|-..+.++.-..+.+-
T Consensus 239 Ekqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLe 274 (786)
T PF05483_consen 239 EKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLE 274 (786)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555555555555544444433
No 266
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.69 E-value=7.9e+02 Score=25.40 Aligned_cols=166 Identities=25% Similarity=0.402 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhH
Q 008199 294 KDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQ 373 (574)
Q Consensus 294 k~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~ 373 (574)
...+...|..||..++ ..+..+..++-++..++++-..+++.-..+++.. -..+..++.+...
T Consensus 45 ~~~~~~~ye~el~~lr----~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e----~~~~~~le~el~~--------- 107 (312)
T PF00038_consen 45 VSRIKEMYEEELRELR----RQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE----LAERKDLEEELES--------- 107 (312)
T ss_dssp -HHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---------
T ss_pred CcccccchhhHHHHhH----HhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhh---------
Confidence 3557788888887654 3444455556666666665555555444433332 1123333332222
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHhhhhhhhhhccCCC----CchHHHHHHHH
Q 008199 374 LASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQ-ALALEIERLKGSLNVMKHMGDD----GDIEVLQKMET 448 (574)
Q Consensus 374 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ-~LELEi~qLkg~L~VmKhm~~~----~d~~~~~k~~~ 448 (574)
+ -+-++......-.+.++|..|+.+|+-.. --+-||..|+.++. .+...+ -.+++-..|.+
T Consensus 108 ---l---------rk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~--~~~~~e~~~~~~~dL~~~L~e 173 (312)
T PF00038_consen 108 ---L---------RKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ--SSVTVEVDQFRSSDLSAALRE 173 (312)
T ss_dssp ---H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHH
T ss_pred ---h---------hhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc--cccceeecccccccchhhhhh
Confidence 1 13444555556667788888888887654 46778999999886 222222 12444555555
Q ss_pred HHHHHHHHHhhh-hhHHHHHH----HHHHHHhhcchHHHHHHHHHHH
Q 008199 449 VLKDLREKEGEL-DDLEALNQ----TLIIRERKSNDELQDARKELIN 490 (574)
Q Consensus 449 l~~~L~ek~~el-~~~e~lnq----~Li~ker~sNdELqeARk~LI~ 490 (574)
+..+........ .++++..+ .|...-..++.++..+|-++..
T Consensus 174 iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~ 220 (312)
T PF00038_consen 174 IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKE 220 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHH
Confidence 554443322211 23333333 2333344556666666666543
No 267
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.68 E-value=3.3e+02 Score=28.46 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHH
Q 008199 391 EDQKKQKEDLHNRIIQLEKQLDAKQA----LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDL 453 (574)
Q Consensus 391 e~hkrEke~~~~ki~~LekqL~~kQ~----LELEi~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L 453 (574)
++-..||+++++.+-+||-++.+-|. ||-|..+|...+ +.++ ++-.+++++.++|...+
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~---~~l~-~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML---KKLP-GEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhch-hHHHHHHHHHHHhcccc
Confidence 34456889999999999988887765 344444443322 2333 34456666666665544
No 268
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=24.38 E-value=7.6e+02 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=11.2
Q ss_pred HHHHHHhhhhhhhhhccCCCCchHHH
Q 008199 418 ALEIERLKGSLNVMKHMGDDGDIEVL 443 (574)
Q Consensus 418 ELEi~qLkg~L~VmKhm~~~~d~~~~ 443 (574)
|..+..|+.-|+=+++....++..++
T Consensus 174 e~~~~~l~~~le~~~~~~~~~~e~f~ 199 (247)
T PF06705_consen 174 ESKLSELRSELEEVKRRREKGDEQFQ 199 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34444444444444444333344443
No 269
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=24.21 E-value=8.7e+02 Score=25.69 Aligned_cols=86 Identities=26% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 008199 340 RGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALAL 419 (574)
Q Consensus 340 r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LEL 419 (574)
|.|--+.-+|+|..||+|-. |+.+|++..| |+|+ ++|+++|-++-..+
T Consensus 72 RrKLKNRVAAQtaRDrKKaR--------------m~eme~~i~d-----L~ee---------n~~L~~en~~Lr~~---- 119 (292)
T KOG4005|consen 72 RRKLKNRVAAQTARDRKKAR--------------MEEMEYEIKD-----LTEE---------NEILQNENDSLRAI---- 119 (292)
T ss_pred HHHHHHHHHHhhhhhHHHHH--------------HHHHHHHHHH-----HHHH---------HHHHHHHHHHHHHH----
Q ss_pred HHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 008199 420 EIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRE 474 (574)
Q Consensus 420 Ei~qLkg~L~VmKhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ke 474 (574)
...|-+-.| ++...|+.+.++|.+..+ .-..+++++-|
T Consensus 120 -----n~~L~~~n~-------el~~~le~~~~~l~~~~~-----~~~~~~~v~ee 157 (292)
T KOG4005|consen 120 -----NESLLAKNH-------ELDSELELLRQELAELKQ-----QQQHNTRVIEE 157 (292)
T ss_pred -----HHHHHhhhH-------HHHHHHHHHHHHHHhhHH-----HHHHhhHHHhh
No 270
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.04 E-value=5.1e+02 Score=30.62 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 008199 385 NVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVM 431 (574)
Q Consensus 385 ~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vm 431 (574)
...+.+++++|=++-+.-.+.+||- .+|+|.-||++++-+.+-.
T Consensus 76 s~~r~~~e~~RI~~sVs~EL~ele~---krqel~seI~~~n~kiEel 119 (907)
T KOG2264|consen 76 SIGRILREQKRILASVSLELTELEV---KRQELNSEIEEINTKIEEL 119 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHH
Confidence 4567788999989888888888775 3699999999887655533
No 271
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.92 E-value=6.6e+02 Score=25.14 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=7.1
Q ss_pred HHHHHHHhhhhhhhhh
Q 008199 417 LALEIERLKGSLNVMK 432 (574)
Q Consensus 417 LELEi~qLkg~L~VmK 432 (574)
||..|.+|+.+.++|+
T Consensus 136 Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 136 LEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 272
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=23.53 E-value=6e+02 Score=25.38 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHhhcchH------HHHHHHHHHHHHHhccCCcccceeecCC---CCchHHHHHHHh
Q 008199 460 LDDLEALNQTLIIRERKSNDE------LQDARKELINALKELSGRAHIGLKRMGE---LDNKPFLEVMNR 520 (574)
Q Consensus 460 l~~~e~lnq~Li~ker~sNdE------LqeARk~LI~~l~~~~~~~~IgiKrmGe---Ld~kpF~~ack~ 520 (574)
|.-+++|..+|..-.-.++.+ ++-.++.|++.|.. -||+.+|. .=.=-||.|+..
T Consensus 93 LpviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~k------~Gv~~i~~~Ge~FDP~~HeAv~~ 156 (193)
T COG0576 93 LPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEK------LGVEEIGPEGEKFDPNLHEAVQR 156 (193)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH------CCCEEeCCCCCCCCHHHhhheee
Confidence 566778888877655555544 66677777777764 45555554 222235666543
No 273
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=23.51 E-value=26 Score=27.83 Aligned_cols=13 Identities=23% Similarity=0.912 Sum_probs=9.8
Q ss_pred CeeeccCCCCCCc
Q 008199 39 EAFTCPYCPKKRK 51 (574)
Q Consensus 39 ~~~~CP~C~gkkk 51 (574)
..|+||.|...|.
T Consensus 33 ~~w~CP~C~a~K~ 45 (50)
T cd00730 33 DDWVCPVCGAGKD 45 (50)
T ss_pred CCCCCCCCCCcHH
Confidence 4699999975543
No 274
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.36 E-value=9.3e+02 Score=25.76 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=5.1
Q ss_pred CCCCccEEE--EeCCc
Q 008199 545 PDWHPFKVI--TAEGK 558 (574)
Q Consensus 545 p~WhPFkvv--~~~g~ 558 (574)
+-=-||++. +|+|.
T Consensus 263 ~~~lPy~i~~~~I~~~ 278 (314)
T PF04111_consen 263 SFELPYKIDKDKIGGV 278 (314)
T ss_dssp ----SS-ECTTEECTC
T ss_pred ccccceeccCCccCCe
Confidence 345688874 44443
No 275
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.17 E-value=7.4e+02 Score=24.49 Aligned_cols=91 Identities=18% Similarity=0.284 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008199 255 QNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQK 334 (574)
Q Consensus 255 ~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~ 334 (574)
.+.+|..+.+-...-++++.+++..+.....++..+|-...++-..|.+-...+...-..--.-+-.+++-|-.+.=.++
T Consensus 14 ~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k 93 (221)
T PF04012_consen 14 INELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRK 93 (221)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555667778888888888888888888888876666555443333333333333333345555555555555
Q ss_pred HHHHHHHHHHH
Q 008199 335 KELELRGEELE 345 (574)
Q Consensus 335 ~eL~~r~k~L~ 345 (574)
..++.....|.
T Consensus 94 ~~~e~~~~~l~ 104 (221)
T PF04012_consen 94 ADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 276
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=23.12 E-value=94 Score=26.49 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=26.4
Q ss_pred eccCCCCCCccccChH--HHHhhhhc-CCCCCCcccchHHHHhHHHHHHHHHHh
Q 008199 42 TCPYCPKKRKQEYLYK--DLLQHASG-VGNSTSNKRSAKEKANHLALAKYLEKD 92 (574)
Q Consensus 42 ~CP~C~gkkk~~y~~~--~LLqHA~g-vg~~ss~R~a~k~ka~H~aLak~L~~d 92 (574)
.||+|..+. ...+|+ +||.+=.+ .|+--+.|.+=--...|+.|+++++.-
T Consensus 7 ~c~~~~~~~-~~iDYKnv~lL~~Fis~~GkIlpRriTgl~~k~Qr~l~~aIKrA 59 (70)
T TIGR00165 7 YCRFTAEGI-QFIDYKDLDLLKKFISERGKILPRRITGTSAKYQRRLARAIKRA 59 (70)
T ss_pred CCCccCCCC-CcCCccCHHHHHHhcCCCCeEcCCccCCcCHHHHHHHHHHHHHH
Confidence 599997443 234444 35555332 232222233301257788888888763
No 277
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=22.91 E-value=4.5e+02 Score=29.18 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 292 EEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEK 346 (574)
Q Consensus 292 eEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k 346 (574)
+++..+-..|.+.++.-++..+.--++++.++..+...|+...++|+...++|.+
T Consensus 313 ~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~ 367 (373)
T COG5019 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367 (373)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666666666666666666667777766666666666666665555544
No 278
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=22.85 E-value=8e+02 Score=24.79 Aligned_cols=55 Identities=11% Similarity=0.259 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 258 LVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSA 312 (574)
Q Consensus 258 lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a 312 (574)
|=..+..+...-...-++|.+.|...+.-|...+-++.+....-+.++..|....
T Consensus 23 L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~ 77 (206)
T PF14988_consen 23 LWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFR 77 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3334444444444555566666666666666666666666655555555544433
No 279
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=22.53 E-value=3.2e+02 Score=30.88 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 008199 382 ADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQAL 417 (574)
Q Consensus 382 ade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~L 417 (574)
...++|+-.++-+++||+|++-..+.|++|.+.+.+
T Consensus 38 eh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~ 73 (436)
T PF01093_consen 38 EHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEV 73 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888899999999999999999888763
No 280
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=22.42 E-value=86 Score=28.04 Aligned_cols=46 Identities=28% Similarity=0.379 Sum_probs=25.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
+.+|.|.|+ .. |...| -..|+. |++ =|+++|-.+-+ |.|||.|.+-
T Consensus 4 ~L~V~NLP~-~~-d~~~I---~~RL~q-Lsd--NCGGkVl~v~~-----~tAilrF~~~ 49 (90)
T PF11608_consen 4 LLYVSNLPT-NK-DPSSI---KNRLRQ-LSD--NCGGKVLSVSG-----GTAILRFPNQ 49 (90)
T ss_dssp EEEEES--T-TS--HHHH---HHHHHH-HHH--TTT--EEE--T-----T-EEEEESSH
T ss_pred EEEEecCCC-CC-CHHHH---HHHHHH-Hhh--ccCCEEEEEeC-----CEEEEEeCCH
Confidence 467899996 22 32221 245555 888 88999998842 7899999874
No 281
>PRK00846 hypothetical protein; Provisional
Probab=22.39 E-value=3.8e+02 Score=23.32 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHhc
Q 008199 440 IEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL 495 (574)
Q Consensus 440 ~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI~~l~~~ 495 (574)
..+-.+|++|+..|.-.++-+ +.||++++. ..+.-|.|+..=+.|..-|.++
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tI---e~LN~~v~~-qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 9 QALEARLVELETRLSFQEQAL---TELSEALAD-ARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777777776666543 688988775 6777889999989999989887
No 282
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=22.26 E-value=1.4e+03 Score=27.34 Aligned_cols=202 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhc----------hHHHHHHHHHH----HHHHHHHHHHHHH
Q 008199 242 KTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTET----------SNSVEKLMEEK----DRLLQSYNEEIKK 307 (574)
Q Consensus 242 KTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~----------s~sL~~~meEk----~~l~~~yneEi~k 307 (574)
++......--...+...+....-.|.+.|.|...+-...+.- +.++..-+-++ ++.-..|.+.|..
T Consensus 150 ~sl~~~l~~te~~T~~A~sa~n~~I~alndh~~~~kes~d~s~~~~w~sv~~aL~~~~~~ad~da~AEk~aRn~~e~L~~ 229 (657)
T KOG1854|consen 150 ESLKKLLQSTENITKLATSAKNVAIGALNDHVNILKESLDDSKEAGWNSVTTALKLPESAADKDATAEKSARNAQEKLVT 229 (657)
T ss_pred hhHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHH--------HHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhhchhHHHH
Q 008199 308 IQLSA--------RDHFQRIFTDHEKLKLQLESQKKE---LELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLAS 376 (574)
Q Consensus 308 mQ~~a--------~~~~~rI~~e~ekl~~eLe~k~~e---L~~r~k~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~ 376 (574)
+-... --++...-+--.||..+|++-.++ ..+-..=+.+.--.-+.-|..++.|++..-- -|.++.
T Consensus 230 i~n~g~~~eTaq~nPlI~~t~~ta~kLs~qldnv~~ev~~~~se~~vv~ky~~~ve~ar~~F~~EL~si~p---~l~~~d 306 (657)
T KOG1854|consen 230 IANLGETGETAQANPLITATKDTAHKLSNQLDNVKREVSSSNSEAEVVGKYSELVEKARHQFEQELESILP---GLSLAD 306 (657)
T ss_pred HHHhcccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCchhh
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHhhhhhhh-hhccCCCCchH
Q 008199 377 LVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDA--------------KQALALEIERLKGSLNV-MKHMGDDGDIE 441 (574)
Q Consensus 377 ~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~--------------kQ~LELEi~qLkg~L~V-mKhm~~~~d~~ 441 (574)
.+-.-.-++.=.|+-- +|.+|.||.++|.. ||.|+ ++.-++.+|.. |.|.+.+--.+
T Consensus 307 ~~~~L~~~dln~liah-------ah~rvdql~~~l~d~k~~~~~~~~~aiEk~Rl~-~~~a~~~~~~~~~~~h~~~~~~E 378 (657)
T KOG1854|consen 307 KEENLSEDDLNKLIAH-------AHTRVDQLQKELEDQKADEELHIKRAIEKQRLQ-DSRALRAQLEYELEAHRRELQQE 378 (657)
T ss_pred hhhhccHhHHHHHHHH-------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-hHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 008199 442 VLQKMETVLKDLR 454 (574)
Q Consensus 442 ~~~k~~~l~~~L~ 454 (574)
+-+++.+....++
T Consensus 379 ~~~~~~~~~~~~~ 391 (657)
T KOG1854|consen 379 LFKLIEEIRSSSK 391 (657)
T ss_pred HHHHHHHHHHHHH
No 283
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.24 E-value=99 Score=29.06 Aligned_cols=30 Identities=13% Similarity=0.324 Sum_probs=24.9
Q ss_pred HhHHHHHHhhhCCC------ceEeecCCeeeccCCC
Q 008199 18 KYEDKSYKKLKSGN------HSVKISDEAFTCPYCP 47 (574)
Q Consensus 18 ~y~~k~y~~Lk~g~------~kVk~~~~~~~CP~C~ 47 (574)
+.....|..+..|+ +.|......|+|+-|+
T Consensus 42 e~L~fafe~l~~gt~~ega~L~i~~~p~~~~C~~CG 77 (135)
T PRK03824 42 EIVEFALNELLKGTILEGAEIIFEEEEAVLKCRNCG 77 (135)
T ss_pred HHHHHHHHHHHcCCcccCCEEEEEecceEEECCCCC
Confidence 57778888999998 3666777999999997
No 284
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.20 E-value=97 Score=30.52 Aligned_cols=11 Identities=18% Similarity=0.631 Sum_probs=8.6
Q ss_pred HHHHHHHhhhc
Q 008199 273 LEEMKERFTET 283 (574)
Q Consensus 273 l~elE~k~~e~ 283 (574)
|+++|.+||..
T Consensus 2 LeD~EsklN~A 12 (166)
T PF04880_consen 2 LEDFESKLNQA 12 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888888765
No 285
>PF06054 CoiA: Competence protein CoiA-like family; InterPro: IPR010330 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Many of the members of this family are described as transcription factors. CoiA falls within a competence-specific operon in Streptococcus. CoiA is an uncharacterised protein.
Probab=22.19 E-value=1.5e+02 Score=32.32 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCeeeccCCCCC-------CccccChHHHHhhhhcCCCCCCcccchHHHHhHHHHHHHHHHhcccCCCCCCCCCCCCCCC
Q 008199 38 DEAFTCPYCPKK-------RKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLT 110 (574)
Q Consensus 38 ~~~~~CP~C~gk-------kk~~y~~~~LLqHA~gvg~~ss~R~a~k~ka~H~aLak~L~~dl~~~~~~~~~~~~~~~~~ 110 (574)
.+.|.||.|++. .+..+ -.|-++..-.. -.. .+-+.|+..-..|-.-+...+-++. ....+.
T Consensus 28 ~~~~~CP~C~~~v~lk~G~~k~~H-----FAH~~~~~c~~--~~~-~ES~~Hl~~K~~l~~~l~~~~~~v~---lE~~l~ 96 (375)
T PF06054_consen 28 KGKYFCPGCGEPVILKKGKKKIPH-----FAHKSKSDCPF--FSE-GESEEHLQGKELLYQWLKRQGFPVE---LEVYLP 96 (375)
T ss_pred CCcEECCCCCCeeEEEEcCcccce-----eeecCCCCCCc--ccC-CchHHHHHHHHHHHHHHHhcCCceE---EeeecC
Confidence 779999999743 22222 34443322110 111 4558888887777776665432211 111111
Q ss_pred C-CCCCceeeecc---eEE-EeeccccccCCCcccccCchhHHHHHHhcCCCCccccccc
Q 008199 111 G-CSHDEKFVWPW---TGI-VVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLW 165 (574)
Q Consensus 111 ~-~~~de~iVWPw---mgI-i~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~ 165 (574)
. ...-|.+|.=. .+| |.-.|. |..++.+.=.. |.-.-+.++|
T Consensus 97 ~~~qraDv~v~~~~~~~aiEiQ~S~i-----------s~~~l~~Rt~~--Y~~~G~~viW 143 (375)
T PF06054_consen 97 EIQQRADVLVNNKGQRLAIEIQCSPI-----------SIEELKERTQG--YKSAGIQVIW 143 (375)
T ss_pred CCceeccEEEEcCCcEEEEEEEeCCC-----------CHHHHHHHHHH--HHHCCCeEEE
Confidence 1 23345555333 333 333332 56667765443 6666666666
No 286
>PRK01156 chromosome segregation protein; Provisional
Probab=22.01 E-value=1.4e+03 Score=27.44 Aligned_cols=35 Identities=6% Similarity=0.214 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHH
Q 008199 255 QNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEK 289 (574)
Q Consensus 255 ~~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~ 289 (574)
.+.++.++...|......+.+++.........+.+
T Consensus 467 ~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~ 501 (895)
T PRK01156 467 SNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD 501 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666766666666666666655544444443
No 287
>PF03804 DUF325: Viral domain of unknown function; InterPro: IPR003225 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.96 E-value=60 Score=27.47 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.8
Q ss_pred cCCcccceeecCCCCchHHHHHHHh
Q 008199 496 SGRAHIGLKRMGELDNKPFLEVMNR 520 (574)
Q Consensus 496 ~~~~~IgiKrmGeLd~kpF~~ack~ 520 (574)
+.-++--|.|.|-+|-.+|+.||+.
T Consensus 31 gkvt~~dV~RFgf~dRnalv~ACM~ 55 (71)
T PF03804_consen 31 GKVTHADVRRFGFLDRNALVSACMA 55 (71)
T ss_pred CCccHhHHHHhCCCcHHHHHHHHHh
Confidence 4466788999999999999999975
No 288
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.94 E-value=6.9e+02 Score=23.72 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 008199 391 EDQKKQKEDLHNRIIQLEKQLDAKQ 415 (574)
Q Consensus 391 e~hkrEke~~~~ki~~LekqL~~kQ 415 (574)
+++....+.+-.+|..||.+|+.-.
T Consensus 69 ~~~~~~~E~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 69 EKRKSNAEQLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 4444556688888988888887654
No 289
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.83 E-value=1e+03 Score=25.61 Aligned_cols=39 Identities=31% Similarity=0.585 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHH
Q 008199 443 LQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKEL 488 (574)
Q Consensus 443 ~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~L 488 (574)
++++.+++.+|++....++...+ +=-+.+.++++|++.+
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~-------~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTN-------KKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34455555555555544443333 3333346777776643
No 290
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=21.80 E-value=4.8e+02 Score=27.66 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=10.9
Q ss_pred hhcchHHHHHHHHHHH
Q 008199 475 RKSNDELQDARKELIN 490 (574)
Q Consensus 475 r~sNdELqeARk~LI~ 490 (574)
+.-.+||++|....+.
T Consensus 219 ~~l~~el~~aK~~~~~ 234 (264)
T PF07246_consen 219 KWLEHELSDAKEDMIR 234 (264)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344888888877665
No 291
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=21.71 E-value=1.2e+02 Score=29.72 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=36.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHHH
Q 008199 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSF 191 (574)
Q Consensus 121 PwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~f 191 (574)
|||+-|+=.=+ . ++=+- -+.-..+-..|+. |.|.....+-|++ .|||-|...-+.-+...+|
T Consensus 84 pPMsTIVVRWl-k-knm~~-~edl~sV~~~Ls~--fGpI~SVT~cGrq----savVvF~d~~SAC~Av~Af 145 (166)
T PF15023_consen 84 PPMSTIVVRWL-K-KNMQP-TEDLKSVIQRLSV--FGPIQSVTLCGRQ----SAVVVFKDITSACKAVSAF 145 (166)
T ss_pred CCceeEEeehh-h-hcCCh-HHHHHHHHHHHHh--cCCcceeeecCCc----eEEEEehhhHHHHHHHHhh
Confidence 99987772221 0 11000 0111333456899 9998887776654 5899998776665444433
No 292
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=21.65 E-value=1.4e+02 Score=32.47 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCC--ceeEEEeeCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGH--SGCAVVEFHK 180 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh--~g~aIV~F~~ 180 (574)
++.|.|+|. ..+...|++.|+.-| ....|+.+.+.... .|+|.|+|..
T Consensus 91 ~l~V~nlp~---------~~~~~~l~~~F~~~G-~v~~v~i~~d~~~~~skg~afVeF~~ 140 (457)
T TIGR01622 91 TVFVLQLAL---------KARERDLYEFFSKVG-KVRDVQCIKDRNSRRSKGVAYVEFYD 140 (457)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEECC
No 293
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=21.57 E-value=1.2e+03 Score=26.55 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=42.3
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHH
Q 008199 295 DRLLQSYNEE--IKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKI 357 (574)
Q Consensus 295 ~~l~~~yneE--i~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~k 357 (574)
..||-.++.+ |..+-..|.+.-+++..-.==..++-++|+.+|=++-.+.+++......+|.+
T Consensus 299 kllhAe~kRd~ni~aiikkAkdddakV~EiaFI~TLea~NKRhdlLaK~~e~Eekl~E~nee~~~ 363 (672)
T KOG4722|consen 299 KLLHAEDKRDKNIMAIIKKAKDDDAKVMEIAFIATLEADNKRHDLLAKDAEVEEKLLEKNEEFLN 363 (672)
T ss_pred HHhhhhhcchhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566666665 66777888888888877665556677777777777766666555544445544
No 294
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.50 E-value=2.4e+02 Score=29.05 Aligned_cols=44 Identities=27% Similarity=0.505 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccC
Q 008199 392 DQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMG 435 (574)
Q Consensus 392 ~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~VmKhm~ 435 (574)
+-..|.+.+.+++.+|+.++.+-+.|..|.++|+..|....+.+
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~~ 116 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLD 116 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 34567788889999999999999999999999999998776643
No 295
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=21.47 E-value=1e+02 Score=29.89 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=37.1
Q ss_pred eecceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC--C-CceeEEEeeCC
Q 008199 119 VWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR--G-HSGCAVVEFHK 180 (574)
Q Consensus 119 VWPwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~--G-h~g~aIV~F~~ 180 (574)
|=-|+++|.++-- +. ....+.+.|+. |.+.+-.+|--++ | --|||+|++..
T Consensus 70 VEGwIi~VtgvHe-Ea--------tEedi~d~F~d--yGeiKNihLNLDRRtGy~KGYaLvEYet 123 (170)
T KOG0130|consen 70 VEGWIIFVTGVHE-EA--------TEEDIHDKFAD--YGEIKNIHLNLDRRTGYVKGYALVEYET 123 (170)
T ss_pred eeeEEEEEeccCc-ch--------hHHHHHHHHhh--cccccceeeccccccccccceeeeehHh
Confidence 4468899988864 32 44667899999 9999998885332 3 34788999864
No 296
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=21.44 E-value=39 Score=32.70 Aligned_cols=9 Identities=33% Similarity=1.313 Sum_probs=7.2
Q ss_pred eeccCCCCC
Q 008199 41 FTCPYCPKK 49 (574)
Q Consensus 41 ~~CP~C~gk 49 (574)
.+||||+++
T Consensus 1 m~cp~c~~~ 9 (154)
T PRK00464 1 MRCPFCGHP 9 (154)
T ss_pred CcCCCCCCC
Confidence 479999865
No 297
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=21.42 E-value=6.5e+02 Score=23.24 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 008199 325 KLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEK 364 (574)
Q Consensus 325 kl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kl~~e~~k 364 (574)
.++.++..-..+++.-...|+..++.-+..+..|+.++..
T Consensus 70 ~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334444444444444444444555555555555544443
No 298
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.39 E-value=1.4e+03 Score=27.14 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHhc
Q 008199 440 IEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL 495 (574)
Q Consensus 440 ~~~~~k~~~l~~~L~ek~~el~~~e~lnq~Li~ker~sNdELqeARk~LI~~l~~~ 495 (574)
...+..|..|..+|..+..+++.|...=| +-....+.+++| +.|+.|
T Consensus 313 e~~~~qI~~le~~l~~~~~~leel~~kL~--------~~sDYeeIK~EL-siLk~i 359 (629)
T KOG0963|consen 313 EKHKAQISALEKELKAKISELEELKEKLN--------SRSDYEEIKKEL-SILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhccHHHHHHHH-HHHHHh
Confidence 34456677777777777777766543211 113455666665 455555
No 299
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=21.25 E-value=1.3e+02 Score=34.05 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=37.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCChh
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDWP 183 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p-~kv~~l~~~~G-h~g~aIV~F~~dw~ 183 (574)
.+.|.|++. ..+...|.+.|+. |.. ..++...+..| +.|++.|.|.+.-+
T Consensus 90 ~vfV~nLp~---------~~~~~~L~~~F~~--~G~i~~~~i~~~~~g~skg~afV~F~~~e~ 141 (562)
T TIGR01628 90 NIFVKNLDK---------SVDNKALFDTFSK--FGNILSCKVATDENGKSRGYGFVHFEKEES 141 (562)
T ss_pred ceEEcCCCc---------cCCHHHHHHHHHh--cCCcceeEeeecCCCCcccEEEEEECCHHH
Confidence 467888885 3467889999999 754 45556666666 78999999998654
No 300
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.97 E-value=8.6e+02 Score=28.29 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCCch
Q 008199 413 AKQALALEIERLKGSLNVMKHMGDDGDI 440 (574)
Q Consensus 413 ~kQ~LELEi~qLkg~L~VmKhm~~~~d~ 440 (574)
.++.|+-..++++..+.-+|.++.+|-.
T Consensus 238 ~~~~l~~~~~~~~~~~~~lk~ap~~D~~ 265 (555)
T TIGR03545 238 AKNDLQNDKKQLKADLAELKKAPQNDLK 265 (555)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccHhHHH
Confidence 5678889999999999999999976533
No 301
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.85 E-value=8.7e+02 Score=24.48 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 008199 392 DQKKQKEDLHNRIIQLEKQLDA 413 (574)
Q Consensus 392 ~hkrEke~~~~ki~~LekqL~~ 413 (574)
......+.+...+...+..|..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 116 SRQEQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 302
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.79 E-value=2.1e+02 Score=25.81 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhH------HHHHHHHHHHhhhhhhhhh
Q 008199 400 LHNRIIQLEKQLDA------KQALALEIERLKGSLNVMK 432 (574)
Q Consensus 400 ~~~ki~~LekqL~~------kQ~LELEi~qLkg~L~VmK 432 (574)
.-.++.++|.+++. =+.|+++|.+++|.+..|.
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 45778888888764 4889999999999998774
No 303
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=20.71 E-value=7.2e+02 Score=23.46 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008199 286 SVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRE 348 (574)
Q Consensus 286 sL~~~meEk~~l~~~yneEi~kmQ~~a~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~ 348 (574)
.+..++++-......++..+...--.--..+...+.+-.++...++.++-++|+-...+.+..
T Consensus 96 ~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~ 158 (229)
T PF03114_consen 96 KFGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEKLR 158 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555444322222222225555666666666666667776666666554
No 304
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=20.55 E-value=41 Score=30.71 Aligned_cols=16 Identities=25% Similarity=0.764 Sum_probs=12.0
Q ss_pred ecCCeeeccCCCCCCc
Q 008199 36 ISDEAFTCPYCPKKRK 51 (574)
Q Consensus 36 ~~~~~~~CP~C~gkkk 51 (574)
.-+-+|.||||---+.
T Consensus 19 ~ldt~FnClfcnHek~ 34 (109)
T KOG3214|consen 19 PLDTQFNCLFCNHEKS 34 (109)
T ss_pred chheeeccCccccccc
Confidence 3467899999986554
No 305
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=20.46 E-value=1.4e+03 Score=26.83 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhh
Q 008199 400 LHNRIIQLEKQLDAKQALALEIERLK 425 (574)
Q Consensus 400 ~~~ki~~LekqL~~kQ~LELEi~qLk 425 (574)
+++-|-+||+|+|.-+.=+||-...+
T Consensus 127 i~~~ideLe~q~d~~ea~~~e~~~er 152 (575)
T KOG2150|consen 127 ISNQIDELERQVDSFEAEELERFIER 152 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999888666655554
No 306
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=20.39 E-value=1.5e+02 Score=32.68 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=33.5
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCccc-ccccCC--CCCceeEEEeeCC
Q 008199 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRV-HPLWNF--RGHSGCAVVEFHK 180 (574)
Q Consensus 123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv-~~l~~~--~Gh~g~aIV~F~~ 180 (574)
.+.|-|+|. ..+...|.+.|.. |.++.. ..+... ..+.|+|.|.|..
T Consensus 297 ~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~ 346 (509)
T TIGR01642 297 RIYIGNLPL---------YLGEDQIKELLES--FGDLKAFNLIKDIATGLSKGYAFCEYKD 346 (509)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEecCCCCCcCeEEEEEECC
Confidence 566778886 4577899999999 777554 333332 3378999999964
No 307
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.22 E-value=1.4e+03 Score=26.65 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=15.2
Q ss_pred HHHHHHhcCCCCcccccccCCCCCc
Q 008199 147 LRDELIRRGFNPTRVHPLWNFRGHS 171 (574)
Q Consensus 147 L~~~l~~~GF~p~kv~~l~~~~Gh~ 171 (574)
..+.+.. +-|..+..++.++|..
T Consensus 135 ~~~~i~~--ilp~~~~~~FfFDGE~ 157 (650)
T TIGR03185 135 WDEFINE--LLPLELADLFFFDGEK 157 (650)
T ss_pred HHHHHHH--hCCHhHHHHhcccHHH
Confidence 3445555 7788888887777654
No 308
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=4.5e+02 Score=28.37 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 008199 396 QKEDLHNRIIQLEKQLDAKQALALEIERL 424 (574)
Q Consensus 396 Eke~~~~ki~~LekqL~~kQ~LELEi~qL 424 (574)
.+.++..+|.+||+.|.+||+=||+-..+
T Consensus 46 ~rK~~~~~~~~le~el~qkH~kEL~~~~~ 74 (302)
T KOG2606|consen 46 KRKELTEDIAKLEKELSQKHKKELEKLKL 74 (302)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Confidence 34567788999999999999999998887
No 309
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.18 E-value=1.1e+03 Score=25.52 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008199 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSA 312 (574)
Q Consensus 256 ~~lv~~L~n~i~~kn~~l~elE~k~~e~s~sL~~~meEk~~l~~~yneEi~kmQ~~a 312 (574)
+..+..|..++...+..+.++-..|....-.+..+-.+...+....++|+.++-...
T Consensus 253 ~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~ 309 (444)
T TIGR03017 253 NPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSV 309 (444)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888887777777666666666666666554443
No 310
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=20.17 E-value=9.2e+02 Score=24.46 Aligned_cols=45 Identities=29% Similarity=0.300 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHH
Q 008199 313 RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKI 357 (574)
Q Consensus 313 ~~~~~rI~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~k 357 (574)
.+-+.-.-.+.++|+.+||-.+...+...++..++......++.+
T Consensus 133 DD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k 177 (192)
T PF09727_consen 133 DDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTK 177 (192)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667888899999999988888888888877765555554
No 311
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=20.14 E-value=7.4e+02 Score=26.31 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=19.3
Q ss_pred CCcccccCchhHHHHHHhcCC--CCcccccccCCCCCceeEEEeeCCC
Q 008199 136 DGRSVGESGSKLRDELIRRGF--NPTRVHPLWNFRGHSGCAVVEFHKD 181 (574)
Q Consensus 136 dg~~~G~s~~~L~~~l~~~GF--~p~kv~~l~~~~Gh~g~aIV~F~~d 181 (574)
+|..--|++..+-..+...=- .|.++ .+.+..|-.|. .|.|++.
T Consensus 67 ~g~~k~mtn~t~mk~IeeVq~S~~~Lrl-TC~~~~~s~Gv-~l~fnGl 112 (264)
T PF07246_consen 67 SGDLKEMTNKTMMKIIEEVQLSISNLRL-TCIGSLGSEGV-SLDFNGL 112 (264)
T ss_pred CcchhhcchhhHHHHHHHHhccccccee-eecCCCCccee-EEecCCC
Confidence 455555566555443322001 11221 23355555553 5677654
No 312
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=20.13 E-value=1.5e+02 Score=28.54 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHhc--cCCcccceeecCCCCchHHHHHHHhhc
Q 008199 466 LNQTLIIRERKSNDELQDARKELINALKEL--SGRAHIGLKRMGELDNKPFLEVMNRKY 522 (574)
Q Consensus 466 lnq~Li~ker~sNdELqeARk~LI~~l~~~--~~~~~IgiKrmGeLd~kpF~~ack~k~ 522 (574)
++-.+.-++|+-=..++.|...|-.|=-.+ .....||++|.=-+-.-.+-..|+.++
T Consensus 84 ~~l~~~~r~~~~L~~I~~AL~Ri~~gtYG~Ce~CGe~I~~~RL~A~P~A~~CI~CQe~~ 142 (151)
T PRK10778 84 LELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCceeccCCCcccHHHHhcCCCccccHHHHHHH
Confidence 334455555555566666766655544444 456789999987777777777776644
Done!